AM354_RS25170 ff7055f363c8a5b802528216cdb7b49f 779 Gene3D G3DSA:3.55.50.10 96 186 2.2E-32 T 29-03-2018 AM354_RS25170 ff7055f363c8a5b802528216cdb7b49f 779 SUPERFAMILY SSF69255 361 449 1.1E-31 T 29-03-2018 AM354_RS25170 ff7055f363c8a5b802528216cdb7b49f 779 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 19 502 1.3E-140 T 29-03-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein AM354_RS25170 ff7055f363c8a5b802528216cdb7b49f 779 Pfam PF05954 Phage late control gene D protein (GPD) 25 328 1.9E-90 T 29-03-2018 AM354_RS25170 ff7055f363c8a5b802528216cdb7b49f 779 SUPERFAMILY SSF69279 186 361 2.89E-42 T 29-03-2018 AM354_RS25170 ff7055f363c8a5b802528216cdb7b49f 779 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 7 519 3.9E-181 T 29-03-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset AM354_RS25170 ff7055f363c8a5b802528216cdb7b49f 779 Gene3D G3DSA:2.40.50.230 367 449 1.3E-33 T 29-03-2018 IPR006531 Gp5 N-terminal AM354_RS25170 ff7055f363c8a5b802528216cdb7b49f 779 SUPERFAMILY SSF69349 439 624 1.26E-33 T 29-03-2018 AM354_RS25170 ff7055f363c8a5b802528216cdb7b49f 779 SUPERFAMILY SSF69279 8 181 2.51E-56 T 29-03-2018 AM354_RS25410 583457184d8e78366947b529beffb928 334 PRINTS PR00955 Flagellar motor switch protein FliM signature 113 132 9.0E-31 T 29-03-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 AM354_RS25410 583457184d8e78366947b529beffb928 334 PRINTS PR00955 Flagellar motor switch protein FliM signature 88 104 9.0E-31 T 29-03-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 AM354_RS25410 583457184d8e78366947b529beffb928 334 PRINTS PR00955 Flagellar motor switch protein FliM signature 212 230 9.0E-31 T 29-03-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 AM354_RS25410 583457184d8e78366947b529beffb928 334 PRINTS PR00955 Flagellar motor switch protein FliM signature 3 16 9.0E-31 T 29-03-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 AM354_RS25410 583457184d8e78366947b529beffb928 334 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 4 320 8.8E-111 T 29-03-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 AM354_RS25410 583457184d8e78366947b529beffb928 334 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 252 320 5.4E-15 T 29-03-2018 IPR001543 Surface presentation of antigen (SpoA) AM354_RS25410 583457184d8e78366947b529beffb928 334 Pfam PF02154 Flagellar motor switch protein FliM 37 230 8.6E-74 T 29-03-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 AM354_RS25410 583457184d8e78366947b529beffb928 334 PIRSF PIRSF002888 2 330 7.3E-95 T 29-03-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 AM354_RS25410 583457184d8e78366947b529beffb928 334 SUPERFAMILY SSF101801 249 322 4.84E-12 T 29-03-2018 IPR001543 Surface presentation of antigen (SpoA) AM354_RS25410 583457184d8e78366947b529beffb928 334 Gene3D G3DSA:3.40.1550.10 45 234 4.5E-38 T 29-03-2018 IPR028976 CheC-like domain AM354_RS25410 583457184d8e78366947b529beffb928 334 Gene3D G3DSA:2.30.330.10 238 327 2.7E-14 T 29-03-2018 IPR001543 Surface presentation of antigen (SpoA) AM354_RS25410 583457184d8e78366947b529beffb928 334 SUPERFAMILY SSF103039 48 230 1.23E-19 T 29-03-2018 IPR028976 CheC-like domain AM354_RS05680 761e11db27c8737d52d1d757c1c40870 428 Gene3D G3DSA:3.65.10.10 22 227 1.7E-64 T 29-03-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 AM354_RS05680 761e11db27c8737d52d1d757c1c40870 428 ProSitePatterns PS00104 EPSP synthase signature 1. 91 105 - T 29-03-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 AM354_RS05680 761e11db27c8737d52d1d757c1c40870 428 PIRSF PIRSF000505 4 428 8.0E-157 T 29-03-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 AM354_RS05680 761e11db27c8737d52d1d757c1c40870 428 SUPERFAMILY SSF55205 4 424 1.96E-146 T 29-03-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 AM354_RS05680 761e11db27c8737d52d1d757c1c40870 428 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 11 427 35.592 T 29-03-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 AM354_RS05680 761e11db27c8737d52d1d757c1c40870 428 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 15 424 3.3E-143 T 29-03-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 AM354_RS05680 761e11db27c8737d52d1d757c1c40870 428 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 9 421 1.6E-151 T 29-03-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 AM354_RS05680 761e11db27c8737d52d1d757c1c40870 428 ProSitePatterns PS00885 EPSP synthase signature 2. 339 357 - T 29-03-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 AM354_RS05680 761e11db27c8737d52d1d757c1c40870 428 Gene3D G3DSA:3.65.10.10 228 426 2.8E-69 T 29-03-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 AM354_RS24185 2196d669adc07d5f61187a9476aa4aa7 501 Gene3D G3DSA:3.40.1080.10 3 230 6.2E-48 T 29-03-2018 AM354_RS24185 2196d669adc07d5f61187a9476aa4aa7 501 PIRSF PIRSF009451 1 501 8.9E-256 T 29-03-2018 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 AM354_RS24185 2196d669adc07d5f61187a9476aa4aa7 501 Pfam PF04223 Citrate lyase, alpha subunit (CitF) 35 499 9.3E-256 T 29-03-2018 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 AM354_RS24185 2196d669adc07d5f61187a9476aa4aa7 501 TIGRFAM TIGR01584 citF: citrate lyase, alpha subunit 23 500 2.5E-236 T 29-03-2018 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 AM354_RS24185 2196d669adc07d5f61187a9476aa4aa7 501 SUPERFAMILY SSF100950 233 498 9.07E-60 T 29-03-2018 AM354_RS24185 2196d669adc07d5f61187a9476aa4aa7 501 SUPERFAMILY SSF100950 19 229 1.47E-73 T 29-03-2018 AM354_RS24185 2196d669adc07d5f61187a9476aa4aa7 501 Gene3D G3DSA:3.40.1080.10 232 475 2.1E-35 T 29-03-2018 AM354_RS06090 0341eec0bd7986a57aa3cd0b5f91ff59 305 Gene3D G3DSA:2.60.40.1090 172 303 1.1E-7 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS06090 0341eec0bd7986a57aa3cd0b5f91ff59 305 Pfam PF09160 FimH, mannose binding 11 159 1.3E-9 T 29-03-2018 IPR015243 FimH, mannose-binding domain AM354_RS06090 0341eec0bd7986a57aa3cd0b5f91ff59 305 Pfam PF00419 Fimbrial protein 170 302 1.6E-10 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS06090 0341eec0bd7986a57aa3cd0b5f91ff59 305 SUPERFAMILY SSF49401 172 302 6.46E-12 T 29-03-2018 IPR008966 Adhesion domain AM354_RS06090 0341eec0bd7986a57aa3cd0b5f91ff59 305 Gene3D G3DSA:2.60.40.1090 9 171 5.1E-41 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS06090 0341eec0bd7986a57aa3cd0b5f91ff59 305 SUPERFAMILY SSF49401 10 170 2.73E-5 T 29-03-2018 IPR008966 Adhesion domain AM354_RS12350 8c448ba6ef201ce2bd76f9586ffa0f05 504 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 234 503 23.132 T 29-03-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 AM354_RS12350 8c448ba6ef201ce2bd76f9586ffa0f05 504 Pfam PF03853 YjeF-related protein N-terminus 40 199 1.7E-42 T 29-03-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 AM354_RS12350 8c448ba6ef201ce2bd76f9586ffa0f05 504 PIRSF PIRSF017184 15 504 9.5E-147 T 29-03-2018 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 AM354_RS12350 8c448ba6ef201ce2bd76f9586ffa0f05 504 Pfam PF01256 Carbohydrate kinase 258 492 4.5E-71 T 29-03-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 AM354_RS12350 8c448ba6ef201ce2bd76f9586ffa0f05 504 ProSitePatterns PS01050 YjeF C-terminal domain signature 2. 438 448 - T 29-03-2018 IPR017953 Carbohydrate kinase, predicted, conserved site AM354_RS12350 8c448ba6ef201ce2bd76f9586ffa0f05 504 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 24 219 1.9E-51 T 29-03-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 AM354_RS12350 8c448ba6ef201ce2bd76f9586ffa0f05 504 SUPERFAMILY SSF64153 17 256 7.85E-62 T 29-03-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 AM354_RS12350 8c448ba6ef201ce2bd76f9586ffa0f05 504 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 19 220 22.862 T 29-03-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 AM354_RS12350 8c448ba6ef201ce2bd76f9586ffa0f05 504 Gene3D G3DSA:3.40.1190.20 228 499 2.8E-50 T 29-03-2018 IPR029056 Ribokinase-like AM354_RS12350 8c448ba6ef201ce2bd76f9586ffa0f05 504 Gene3D G3DSA:3.40.50.10260 2 227 1.7E-64 T 29-03-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 AM354_RS12350 8c448ba6ef201ce2bd76f9586ffa0f05 504 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 232 496 1.7E-81 T 29-03-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 AM354_RS12350 8c448ba6ef201ce2bd76f9586ffa0f05 504 SUPERFAMILY SSF53613 231 495 6.33E-74 T 29-03-2018 IPR029056 Ribokinase-like AM354_RS12695 9237994f794b6e7632bdf0c2a9f58be4 66 Pfam PF02597 ThiS family 4 66 8.8E-15 T 29-03-2018 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 Reactome: R-HSA-947581 AM354_RS12695 9237994f794b6e7632bdf0c2a9f58be4 66 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 3 66 6.3E-20 T 29-03-2018 IPR010035 ThiS, thiamine-biosynthesis AM354_RS12695 9237994f794b6e7632bdf0c2a9f58be4 66 Gene3D G3DSA:3.10.20.30 1 66 3.2E-22 T 29-03-2018 IPR012675 Beta-grasp domain AM354_RS12695 9237994f794b6e7632bdf0c2a9f58be4 66 SUPERFAMILY SSF54285 1 66 1.6E-17 T 29-03-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp AM354_RS14335 10174c51e6e8836799adc1d2c490eeac 271 Gene3D G3DSA:1.10.8.50 133 271 5.1E-50 T 29-03-2018 AM354_RS14335 10174c51e6e8836799adc1d2c490eeac 271 SMART SM01232 131 223 8.6E-50 T 29-03-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 AM354_RS14335 10174c51e6e8836799adc1d2c490eeac 271 SUPERFAMILY SSF57716 219 270 5.99E-17 T 29-03-2018 AM354_RS14335 10174c51e6e8836799adc1d2c490eeac 271 Gene3D G3DSA:3.20.190.10 1 132 1.7E-36 T 29-03-2018 AM354_RS14335 10174c51e6e8836799adc1d2c490eeac 271 SUPERFAMILY SSF81624 2 140 2.49E-41 T 29-03-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AM354_RS14335 10174c51e6e8836799adc1d2c490eeac 271 SMART SM00898 2 117 6.9E-51 T 29-03-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AM354_RS14335 10174c51e6e8836799adc1d2c490eeac 271 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 131 220 5.4E-28 T 29-03-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 AM354_RS14335 10174c51e6e8836799adc1d2c490eeac 271 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 270 2.1E-101 T 29-03-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 AM354_RS14335 10174c51e6e8836799adc1d2c490eeac 271 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 271 43.857 T 29-03-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 AM354_RS14335 10174c51e6e8836799adc1d2c490eeac 271 Pfam PF06827 Zinc finger found in FPG and IleRS 243 270 6.7E-11 T 29-03-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 AM354_RS14335 10174c51e6e8836799adc1d2c490eeac 271 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 116 8.1E-31 T 29-03-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AM354_RS14335 10174c51e6e8836799adc1d2c490eeac 271 SUPERFAMILY SSF46946 132 224 8.24E-30 T 29-03-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 AM354_RS14335 10174c51e6e8836799adc1d2c490eeac 271 ProSitePatterns PS01242 Zinc finger FPG-type signature. 246 270 - T 29-03-2018 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 AM354_RS25855 65cf20f850c960d4b28fcc12090393e5 148 SMART SM00749 28 91 1.7E-6 T 29-03-2018 IPR014004 Transport-associated and nodulation domain, bacteria AM354_RS25855 65cf20f850c960d4b28fcc12090393e5 148 SUPERFAMILY SSF54106 97 147 2.22E-8 T 29-03-2018 IPR018392 LysM domain AM354_RS25855 65cf20f850c960d4b28fcc12090393e5 148 Gene3D G3DSA:3.10.350.10 93 148 3.8E-16 T 29-03-2018 AM354_RS25855 65cf20f850c960d4b28fcc12090393e5 148 Pfam PF01476 LysM domain 99 147 1.8E-14 T 29-03-2018 IPR018392 LysM domain AM354_RS25855 65cf20f850c960d4b28fcc12090393e5 148 SMART SM00257 98 147 7.1E-14 T 29-03-2018 IPR018392 LysM domain AM354_RS25855 65cf20f850c960d4b28fcc12090393e5 148 Pfam PF04972 BON domain 29 90 3.7E-11 T 29-03-2018 IPR007055 BON domain AM354_RS23035 7e1a59c8300f3dbf04c6846fc5e498c2 181 Gene3D G3DSA:3.90.79.10 2 179 1.4E-37 T 29-03-2018 AM354_RS23035 7e1a59c8300f3dbf04c6846fc5e498c2 181 Pfam PF00293 NUDIX domain 37 151 3.7E-19 T 29-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AM354_RS23035 7e1a59c8300f3dbf04c6846fc5e498c2 181 SUPERFAMILY SSF55811 11 167 2.84E-34 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 AM354_RS23035 7e1a59c8300f3dbf04c6846fc5e498c2 181 PIRSF PIRSF017340 2 171 1.2E-69 T 29-03-2018 IPR024195 NUDIX hydrolase, YfcD, predicted GO:0016817 AM354_RS01655 8f7a7556dfe682e22a39a59f8c2e2671 701 Gene3D G3DSA:3.30.230.10 499 614 2.7E-40 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AM354_RS01655 8f7a7556dfe682e22a39a59f8c2e2671 701 SUPERFAMILY SSF54980 407 485 1.51E-24 T 29-03-2018 IPR035647 EF-G domain III/V-like AM354_RS01655 8f7a7556dfe682e22a39a59f8c2e2671 701 Pfam PF03144 Elongation factor Tu domain 2 329 396 8.3E-17 T 29-03-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AM354_RS01655 8f7a7556dfe682e22a39a59f8c2e2671 701 SUPERFAMILY SSF50447 272 409 2.42E-35 T 29-03-2018 IPR009000 Translation protein, beta-barrel domain AM354_RS01655 8f7a7556dfe682e22a39a59f8c2e2671 701 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 700 0.0 T 29-03-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AM354_RS01655 8f7a7556dfe682e22a39a59f8c2e2671 701 PRINTS PR00315 GTP-binding elongation factor signature 137 146 4.2E-16 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS01655 8f7a7556dfe682e22a39a59f8c2e2671 701 PRINTS PR00315 GTP-binding elongation factor signature 85 95 4.2E-16 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS01655 8f7a7556dfe682e22a39a59f8c2e2671 701 PRINTS PR00315 GTP-binding elongation factor signature 12 25 4.2E-16 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS01655 8f7a7556dfe682e22a39a59f8c2e2671 701 PRINTS PR00315 GTP-binding elongation factor signature 58 66 4.2E-16 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS01655 8f7a7556dfe682e22a39a59f8c2e2671 701 PRINTS PR00315 GTP-binding elongation factor signature 101 112 4.2E-16 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS01655 8f7a7556dfe682e22a39a59f8c2e2671 701 Gene3D G3DSA:3.40.50.300 1 293 3.3E-55 T 29-03-2018 AM354_RS01655 8f7a7556dfe682e22a39a59f8c2e2671 701 Gene3D G3DSA:3.30.70.240 615 694 7.3E-31 T 29-03-2018 AM354_RS01655 8f7a7556dfe682e22a39a59f8c2e2671 701 Pfam PF14492 Elongation Factor G, domain II 409 483 1.2E-33 T 29-03-2018 AM354_RS01655 8f7a7556dfe682e22a39a59f8c2e2671 701 Pfam PF00679 Elongation factor G C-terminus 606 694 2.4E-31 T 29-03-2018 IPR000640 Elongation factor EFG, domain V-like AM354_RS01655 8f7a7556dfe682e22a39a59f8c2e2671 701 Gene3D G3DSA:3.30.70.870 407 498 5.4E-37 T 29-03-2018 AM354_RS01655 8f7a7556dfe682e22a39a59f8c2e2671 701 SUPERFAMILY SSF54980 609 697 6.83E-31 T 29-03-2018 IPR035647 EF-G domain III/V-like AM354_RS01655 8f7a7556dfe682e22a39a59f8c2e2671 701 Pfam PF00009 Elongation factor Tu GTP binding domain 9 288 1.8E-64 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS01655 8f7a7556dfe682e22a39a59f8c2e2671 701 SMART SM00838 606 695 1.9E-54 T 29-03-2018 IPR000640 Elongation factor EFG, domain V-like AM354_RS01655 8f7a7556dfe682e22a39a59f8c2e2671 701 Hamap MF_00054_B Elongation factor G [fusA]. 6 699 108.46 T 29-03-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AM354_RS01655 8f7a7556dfe682e22a39a59f8c2e2671 701 SMART SM00889 485 604 1.7E-69 T 29-03-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 AM354_RS01655 8f7a7556dfe682e22a39a59f8c2e2671 701 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 29-03-2018 IPR031157 Tr-type G domain, conserved site AM354_RS01655 8f7a7556dfe682e22a39a59f8c2e2671 701 Gene3D G3DSA:2.40.30.10 295 406 7.0E-33 T 29-03-2018 AM354_RS01655 8f7a7556dfe682e22a39a59f8c2e2671 701 Pfam PF03764 Elongation factor G, domain IV 484 603 4.4E-45 T 29-03-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 AM354_RS01655 8f7a7556dfe682e22a39a59f8c2e2671 701 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 187 7.0E-31 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AM354_RS01655 8f7a7556dfe682e22a39a59f8c2e2671 701 SUPERFAMILY SSF52540 6 288 1.97E-105 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS01655 8f7a7556dfe682e22a39a59f8c2e2671 701 SUPERFAMILY SSF54211 484 605 3.54E-42 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM354_RS25610 8a98625237ae88e0af6e0f4ee567f52f 289 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 29 64 5.0E-5 T 29-03-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AM354_RS25610 8a98625237ae88e0af6e0f4ee567f52f 289 Gene3D G3DSA:1.10.3720.10 26 289 3.2E-42 T 29-03-2018 AM354_RS25610 8a98625237ae88e0af6e0f4ee567f52f 289 SUPERFAMILY SSF161098 82 267 3.92E-25 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS25610 8a98625237ae88e0af6e0f4ee567f52f 289 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 105 286 5.6E-29 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS13210 1d2b35044b8aa4f343d64cc2be7d9fa4 316 Gene3D G3DSA:3.30.460.20 1 125 1.8E-8 T 29-03-2018 AM354_RS13210 1d2b35044b8aa4f343d64cc2be7d9fa4 316 SUPERFAMILY SSF144083 251 314 1.83E-20 T 29-03-2018 AM354_RS13210 1d2b35044b8aa4f343d64cc2be7d9fa4 316 Pfam PF01544 CorA-like Mg2+ transporter protein 26 312 2.0E-54 T 29-03-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 AM354_RS13210 1d2b35044b8aa4f343d64cc2be7d9fa4 316 SUPERFAMILY SSF143865 1 255 1.44E-37 T 29-03-2018 AM354_RS13210 1d2b35044b8aa4f343d64cc2be7d9fa4 316 Gene3D G3DSA:1.20.58.340 249 316 1.3E-20 T 29-03-2018 AM354_RS13210 1d2b35044b8aa4f343d64cc2be7d9fa4 316 TIGRFAM TIGR00383 corA: magnesium and cobalt transport protein CorA 5 316 7.3E-108 T 29-03-2018 IPR004488 Magnesium/cobalt transport protein CorA GO:0006824|GO:0015087|GO:0015095|GO:0015693|GO:0016020 AM354_RS13210 1d2b35044b8aa4f343d64cc2be7d9fa4 316 Gene3D G3DSA:1.20.58.340 131 248 8.5E-9 T 29-03-2018 AM354_RS10505 b7f8e4925104fbeb18100ca03a1c951d 250 Pfam PF07072 Cell division protein 22 228 8.6E-79 T 29-03-2018 IPR009777 Cell division protein ZapD AM354_RS10505 b7f8e4925104fbeb18100ca03a1c951d 250 Hamap MF_01092 Cell division protein ZapD [zapD]. 7 250 32.876 T 29-03-2018 IPR009777 Cell division protein ZapD AM354_RS10505 b7f8e4925104fbeb18100ca03a1c951d 250 Gene3D G3DSA:1.10.3900.10 16 177 1.1E-62 T 29-03-2018 AM354_RS10505 b7f8e4925104fbeb18100ca03a1c951d 250 SUPERFAMILY SSF160950 7 250 8.76E-91 T 29-03-2018 IPR009777 Cell division protein ZapD AM354_RS10505 b7f8e4925104fbeb18100ca03a1c951d 250 Gene3D G3DSA:2.60.440.10 178 250 1.9E-26 T 29-03-2018 IPR027462 Z ring-associated protein D, C-terminal domain AM354_RS23120 0c840423a97b2fbd4fdae62dfa229a9f 314 SUPERFAMILY SSF53850 96 270 6.73E-32 T 29-03-2018 AM354_RS23120 0c840423a97b2fbd4fdae62dfa229a9f 314 SUPERFAMILY SSF46785 10 119 4.08E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS23120 0c840423a97b2fbd4fdae62dfa229a9f 314 Gene3D G3DSA:3.40.190.10 99 181 1.0E-15 T 29-03-2018 AM354_RS23120 0c840423a97b2fbd4fdae62dfa229a9f 314 Pfam PF03466 LysR substrate binding domain 97 275 1.5E-30 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS23120 0c840423a97b2fbd4fdae62dfa229a9f 314 Gene3D G3DSA:1.10.10.10 9 93 1.4E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS23120 0c840423a97b2fbd4fdae62dfa229a9f 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 49 5.8E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS23120 0c840423a97b2fbd4fdae62dfa229a9f 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 39 5.8E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS23120 0c840423a97b2fbd4fdae62dfa229a9f 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 49 60 5.8E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS23120 0c840423a97b2fbd4fdae62dfa229a9f 314 Gene3D G3DSA:3.40.190.10 182 262 2.0E-14 T 29-03-2018 AM354_RS23120 0c840423a97b2fbd4fdae62dfa229a9f 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 71 2.0E-17 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS17500 865499000aae3fd16390e1fcea24245c 102 Gene3D G3DSA:1.10.10.10 11 89 4.6E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS17500 865499000aae3fd16390e1fcea24245c 102 Pfam PF12840 Helix-turn-helix domain 8 79 3.0E-10 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS17500 865499000aae3fd16390e1fcea24245c 102 SMART SM00418 8 100 3.8E-10 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS17500 865499000aae3fd16390e1fcea24245c 102 SUPERFAMILY SSF46785 3 99 1.16E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS02280 32e48864739b5cd16793c67faf55e872 305 SUPERFAMILY SSF53850 53 287 8.01E-42 T 29-03-2018 AM354_RS02280 32e48864739b5cd16793c67faf55e872 305 SMART SM00062 56 290 7.4E-24 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM354_RS02280 32e48864739b5cd16793c67faf55e872 305 Gene3D G3DSA:3.40.190.10 156 243 2.2E-13 T 29-03-2018 AM354_RS02280 32e48864739b5cd16793c67faf55e872 305 Gene3D G3DSA:3.40.190.10 50 155 1.6E-19 T 29-03-2018 AM354_RS02280 32e48864739b5cd16793c67faf55e872 305 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 65 287 1.6E-37 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM354_RS24365 0fc8b4853eb50d9c73ae2b503b4e7c77 246 Gene3D G3DSA:3.40.50.300 2 220 1.0E-55 T 29-03-2018 AM354_RS24365 0fc8b4853eb50d9c73ae2b503b4e7c77 246 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS24365 0fc8b4853eb50d9c73ae2b503b4e7c77 246 SUPERFAMILY SSF52540 9 205 4.48E-53 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS24365 0fc8b4853eb50d9c73ae2b503b4e7c77 246 SMART SM00382 34 211 3.0E-13 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS24365 0fc8b4853eb50d9c73ae2b503b4e7c77 246 Pfam PF00005 ABC transporter 26 160 3.5E-26 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS08610 32a47a8ce838142a77ad12fb30189f38 421 Pfam PF06545 Protein of unknown function (DUF1116) 87 302 1.5E-98 T 29-03-2018 IPR009499 Protein of unknown function DUF1116 AM354_RS08610 32a47a8ce838142a77ad12fb30189f38 421 Gene3D G3DSA:3.90.1710.10 105 247 1.4E-60 T 29-03-2018 AM354_RS08610 32a47a8ce838142a77ad12fb30189f38 421 Gene3D G3DSA:3.90.1700.10 250 414 2.4E-72 T 29-03-2018 AM354_RS08610 32a47a8ce838142a77ad12fb30189f38 421 Gene3D G3DSA:1.10.10.660 40 104 1.5E-33 T 29-03-2018 IPR024033 Uncharacterised domain, YlbE AM354_RS20355 326557032f4b58cde65153c63a934a62 343 SUPERFAMILY SSF52540 1 240 2.6E-85 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS20355 326557032f4b58cde65153c63a934a62 343 SMART SM00930 265 340 1.3E-25 T 29-03-2018 IPR018449 NIL domain AM354_RS20355 326557032f4b58cde65153c63a934a62 343 SUPERFAMILY SSF55021 248 343 6.07E-25 T 29-03-2018 AM354_RS20355 326557032f4b58cde65153c63a934a62 343 SMART SM00382 30 217 1.6E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS20355 326557032f4b58cde65153c63a934a62 343 Pfam PF09383 NIL domain 268 339 5.5E-19 T 29-03-2018 IPR018449 NIL domain AM354_RS20355 326557032f4b58cde65153c63a934a62 343 Gene3D G3DSA:3.30.70.260 256 343 1.5E-26 T 29-03-2018 AM354_RS20355 326557032f4b58cde65153c63a934a62 343 Gene3D G3DSA:3.40.50.300 1 255 5.0E-77 T 29-03-2018 AM354_RS20355 326557032f4b58cde65153c63a934a62 343 TIGRFAM TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein 1 343 2.5E-198 T 29-03-2018 IPR012692 ABC transporter, methionine import, ATP-binding protein MetN, proteobacteria GO:0005524|GO:0009276|GO:0048473|GO:0048474 AM354_RS20355 326557032f4b58cde65153c63a934a62 343 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS20355 326557032f4b58cde65153c63a934a62 343 Pfam PF00005 ABC transporter 21 169 1.5E-35 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS19300 29ec241d109011554c8ec881dac7bbfc 359 Pfam PF01116 Fructose-bisphosphate aldolase class-II 17 355 2.3E-90 T 29-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AM354_RS19300 29ec241d109011554c8ec881dac7bbfc 359 SUPERFAMILY SSF51569 4 357 2.75E-132 T 29-03-2018 AM354_RS19300 29ec241d109011554c8ec881dac7bbfc 359 Gene3D G3DSA:3.20.20.70 4 358 1.2E-102 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS19300 29ec241d109011554c8ec881dac7bbfc 359 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 172 183 - T 29-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AM354_RS19300 29ec241d109011554c8ec881dac7bbfc 359 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 101 112 - T 29-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AM354_RS19300 29ec241d109011554c8ec881dac7bbfc 359 PIRSF PIRSF001359 13 359 1.8E-102 T 29-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AM354_RS19300 29ec241d109011554c8ec881dac7bbfc 359 TIGRFAM TIGR01520 FruBisAldo_II_A: fructose-bisphosphate aldolase, class II 4 358 1.1E-188 T 29-03-2018 IPR006411 Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 AM354_RS19300 29ec241d109011554c8ec881dac7bbfc 359 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 14 357 2.4E-115 T 29-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AM354_RS00450 d04acfef715f7dd8c0834e2bd4819749 545 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 84 465 4.9E-85 T 29-03-2018 IPR000914 Solute-binding protein family 5 domain AM354_RS00450 d04acfef715f7dd8c0834e2bd4819749 545 Gene3D G3DSA:3.10.105.10 314 514 5.7E-52 T 29-03-2018 AM354_RS00450 d04acfef715f7dd8c0834e2bd4819749 545 Gene3D G3DSA:3.90.76.10 65 177 1.3E-34 T 29-03-2018 AM354_RS00450 d04acfef715f7dd8c0834e2bd4819749 545 PIRSF PIRSF002741 1 545 2.8E-105 T 29-03-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AM354_RS00450 d04acfef715f7dd8c0834e2bd4819749 545 Gene3D G3DSA:3.40.190.10 178 313 4.4E-34 T 29-03-2018 AM354_RS00450 d04acfef715f7dd8c0834e2bd4819749 545 SUPERFAMILY SSF53850 37 527 1.23E-138 T 29-03-2018 AM354_RS19340 3582ca9e16b8b4995f347ef488f3045c 231 SUPERFAMILY SSF53639 1 223 5.1E-68 T 29-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM354_RS19340 3582ca9e16b8b4995f347ef488f3045c 231 SMART SM01007 7 198 6.8E-67 T 29-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM354_RS19340 3582ca9e16b8b4995f347ef488f3045c 231 Gene3D G3DSA:3.40.225.10 1 231 1.1E-57 T 29-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM354_RS19340 3582ca9e16b8b4995f347ef488f3045c 231 TIGRFAM TIGR00760 araD: L-ribulose-5-phosphate 4-epimerase 1 231 3.5E-129 T 29-03-2018 IPR004661 L-ribulose-5-phosphate 4-epimerase GO:0008270|GO:0008742|GO:0019572 KEGG: 00040+5.1.3.4|KEGG: 00053+5.1.3.4|MetaCyc: PWY-6961 AM354_RS19340 3582ca9e16b8b4995f347ef488f3045c 231 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 7 196 5.0E-47 T 29-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM354_RS23940 d13a9c2dc1aa9d50f32309a391a29f04 299 Gene3D G3DSA:3.40.190.10 181 270 3.7E-21 T 29-03-2018 AM354_RS23940 d13a9c2dc1aa9d50f32309a391a29f04 299 SUPERFAMILY SSF46785 4 115 1.23E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS23940 d13a9c2dc1aa9d50f32309a391a29f04 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 9.9E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS23940 d13a9c2dc1aa9d50f32309a391a29f04 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 9.9E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS23940 d13a9c2dc1aa9d50f32309a391a29f04 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 9.9E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS23940 d13a9c2dc1aa9d50f32309a391a29f04 299 Gene3D G3DSA:3.40.190.10 92 180 6.2E-23 T 29-03-2018 AM354_RS23940 d13a9c2dc1aa9d50f32309a391a29f04 299 Pfam PF03466 LysR substrate binding domain 90 294 6.1E-42 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS23940 d13a9c2dc1aa9d50f32309a391a29f04 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 9.0E-20 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS23940 d13a9c2dc1aa9d50f32309a391a29f04 299 Gene3D G3DSA:1.10.10.10 2 87 2.9E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS23940 d13a9c2dc1aa9d50f32309a391a29f04 299 SUPERFAMILY SSF53850 92 297 1.36E-42 T 29-03-2018 AM354_RS24830 a4e73e1f7318f7e0ca24dc061419a305 899 Pfam PF00689 Cation transporting ATPase, C-terminus 722 890 1.8E-17 T 29-03-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 AM354_RS24830 a4e73e1f7318f7e0ca24dc061419a305 899 SUPERFAMILY SSF81665 270 363 1.31E-102 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 AM354_RS24830 a4e73e1f7318f7e0ca24dc061419a305 899 SUPERFAMILY SSF81665 688 896 1.31E-102 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 AM354_RS24830 a4e73e1f7318f7e0ca24dc061419a305 899 SUPERFAMILY SSF81665 24 144 1.31E-102 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 AM354_RS24830 a4e73e1f7318f7e0ca24dc061419a305 899 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 371 377 - T 29-03-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 AM354_RS24830 a4e73e1f7318f7e0ca24dc061419a305 899 Pfam PF00690 Cation transporter/ATPase, N-terminus 25 90 6.4E-16 T 29-03-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 AM354_RS24830 a4e73e1f7318f7e0ca24dc061419a305 899 Pfam PF00122 E1-E2 ATPase 142 349 5.8E-39 T 29-03-2018 AM354_RS24830 a4e73e1f7318f7e0ca24dc061419a305 899 Gene3D G3DSA:3.40.1110.10 313 546 3.8E-36 T 29-03-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AM354_RS24830 a4e73e1f7318f7e0ca24dc061419a305 899 SMART SM00831 22 95 2.9E-21 T 29-03-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 AM354_RS24830 a4e73e1f7318f7e0ca24dc061419a305 899 PRINTS PR01836 Magnesium-transporting ATPase signature 747 760 2.1E-89 T 29-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 AM354_RS24830 a4e73e1f7318f7e0ca24dc061419a305 899 PRINTS PR01836 Magnesium-transporting ATPase signature 697 712 2.1E-89 T 29-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 AM354_RS24830 a4e73e1f7318f7e0ca24dc061419a305 899 PRINTS PR01836 Magnesium-transporting ATPase signature 802 823 2.1E-89 T 29-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 AM354_RS24830 a4e73e1f7318f7e0ca24dc061419a305 899 PRINTS PR01836 Magnesium-transporting ATPase signature 403 416 2.1E-89 T 29-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 AM354_RS24830 a4e73e1f7318f7e0ca24dc061419a305 899 PRINTS PR01836 Magnesium-transporting ATPase signature 282 298 2.1E-89 T 29-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 AM354_RS24830 a4e73e1f7318f7e0ca24dc061419a305 899 PRINTS PR01836 Magnesium-transporting ATPase signature 299 318 2.1E-89 T 29-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 AM354_RS24830 a4e73e1f7318f7e0ca24dc061419a305 899 PRINTS PR01836 Magnesium-transporting ATPase signature 767 783 2.1E-89 T 29-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 AM354_RS24830 a4e73e1f7318f7e0ca24dc061419a305 899 PRINTS PR01836 Magnesium-transporting ATPase signature 715 726 2.1E-89 T 29-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 AM354_RS24830 a4e73e1f7318f7e0ca24dc061419a305 899 PRINTS PR01836 Magnesium-transporting ATPase signature 852 873 2.1E-89 T 29-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 AM354_RS24830 a4e73e1f7318f7e0ca24dc061419a305 899 TIGRFAM TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase 23 898 0.0 T 29-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 AM354_RS24830 a4e73e1f7318f7e0ca24dc061419a305 899 Gene3D G3DSA:1.20.1110.10 563 894 2.5E-54 T 29-03-2018 AM354_RS24830 a4e73e1f7318f7e0ca24dc061419a305 899 SUPERFAMILY SSF81653 160 269 4.84E-24 T 29-03-2018 IPR008250 P-type ATPase, A domain Reactome: R-HSA-936837 AM354_RS24830 a4e73e1f7318f7e0ca24dc061419a305 899 SUPERFAMILY SSF56784 367 387 2.12E-36 T 29-03-2018 IPR023214 HAD-like domain AM354_RS24830 a4e73e1f7318f7e0ca24dc061419a305 899 SUPERFAMILY SSF56784 492 738 2.12E-36 T 29-03-2018 IPR023214 HAD-like domain AM354_RS24830 a4e73e1f7318f7e0ca24dc061419a305 899 Gene3D G3DSA:2.70.150.10 31 271 2.9E-41 T 29-03-2018 AM354_RS24830 a4e73e1f7318f7e0ca24dc061419a305 899 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 605 728 2.2E-28 T 29-03-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AM354_RS24830 a4e73e1f7318f7e0ca24dc061419a305 899 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 264 407 8.4E-20 T 29-03-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AM354_RS24830 a4e73e1f7318f7e0ca24dc061419a305 899 Pfam PF00702 haloacid dehalogenase-like hydrolase 365 653 3.1E-19 T 29-03-2018 AM354_RS09075 f32e31d04f8c208a8f823c09e35bb0ef 784 SUPERFAMILY SSF52540 314 586 1.15E-49 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS09075 f32e31d04f8c208a8f823c09e35bb0ef 784 SMART SM00464 10 202 1.3E-85 T 29-03-2018 IPR003111 Lon, substrate-binding domain AM354_RS09075 f32e31d04f8c208a8f823c09e35bb0ef 784 SUPERFAMILY SSF54211 595 771 1.4E-59 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM354_RS09075 f32e31d04f8c208a8f823c09e35bb0ef 784 PIRSF PIRSF001174 1 775 0.0 T 29-03-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 AM354_RS09075 f32e31d04f8c208a8f823c09e35bb0ef 784 Gene3D G3DSA:1.10.8.60 491 584 1.7E-31 T 29-03-2018 AM354_RS09075 f32e31d04f8c208a8f823c09e35bb0ef 784 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 10 201 7.8E-44 T 29-03-2018 IPR003111 Lon, substrate-binding domain AM354_RS09075 f32e31d04f8c208a8f823c09e35bb0ef 784 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 352 489 1.7E-17 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AM354_RS09075 f32e31d04f8c208a8f823c09e35bb0ef 784 SMART SM00382 348 492 9.4E-11 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS09075 f32e31d04f8c208a8f823c09e35bb0ef 784 Gene3D G3DSA:2.30.130.40 1 118 6.6E-32 T 29-03-2018 AM354_RS09075 f32e31d04f8c208a8f823c09e35bb0ef 784 Gene3D G3DSA:3.40.50.300 313 490 4.0E-30 T 29-03-2018 AM354_RS09075 f32e31d04f8c208a8f823c09e35bb0ef 784 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 676 684 - T 29-03-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 AM354_RS09075 f32e31d04f8c208a8f823c09e35bb0ef 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 356 375 6.0E-57 T 29-03-2018 AM354_RS09075 f32e31d04f8c208a8f823c09e35bb0ef 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 595 611 6.0E-57 T 29-03-2018 AM354_RS09075 f32e31d04f8c208a8f823c09e35bb0ef 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 726 744 6.0E-57 T 29-03-2018 AM354_RS09075 f32e31d04f8c208a8f823c09e35bb0ef 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 673 692 6.0E-57 T 29-03-2018 AM354_RS09075 f32e31d04f8c208a8f823c09e35bb0ef 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 703 722 6.0E-57 T 29-03-2018 AM354_RS09075 f32e31d04f8c208a8f823c09e35bb0ef 784 SUPERFAMILY SSF88697 10 201 9.69E-52 T 29-03-2018 IPR015947 PUA-like domain AM354_RS09075 f32e31d04f8c208a8f823c09e35bb0ef 784 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 570 772 3.3E-97 T 29-03-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 AM354_RS09075 f32e31d04f8c208a8f823c09e35bb0ef 784 Gene3D G3DSA:3.30.230.10 585 772 3.5E-70 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AM354_RS09075 f32e31d04f8c208a8f823c09e35bb0ef 784 Hamap MF_01973 Lon protease [lon]. 11 772 72.053 T 29-03-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 AM354_RS09075 f32e31d04f8c208a8f823c09e35bb0ef 784 Gene3D G3DSA:1.10.4060.10 122 211 2.2E-30 T 29-03-2018 AM354_RS09075 f32e31d04f8c208a8f823c09e35bb0ef 784 TIGRFAM TIGR00763 lon: endopeptidase La 12 771 0.0 T 29-03-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 AM354_RS12520 ddcab2e023a6bf7178baad9be570f3e4 286 SUPERFAMILY SSF47336 216 283 1.13E-8 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS12520 ddcab2e023a6bf7178baad9be570f3e4 286 PRINTS PR01398 Isochorismatase signature 63 80 9.3E-52 T 29-03-2018 IPR016291 Isochorismatase GO:0008908 MetaCyc: PWY-5901 AM354_RS12520 ddcab2e023a6bf7178baad9be570f3e4 286 PRINTS PR01398 Isochorismatase signature 2 14 9.3E-52 T 29-03-2018 IPR016291 Isochorismatase GO:0008908 MetaCyc: PWY-5901 AM354_RS12520 ddcab2e023a6bf7178baad9be570f3e4 286 PRINTS PR01398 Isochorismatase signature 112 134 9.3E-52 T 29-03-2018 IPR016291 Isochorismatase GO:0008908 MetaCyc: PWY-5901 AM354_RS12520 ddcab2e023a6bf7178baad9be570f3e4 286 PRINTS PR01398 Isochorismatase signature 168 186 9.3E-52 T 29-03-2018 IPR016291 Isochorismatase GO:0008908 MetaCyc: PWY-5901 AM354_RS12520 ddcab2e023a6bf7178baad9be570f3e4 286 PRINTS PR01398 Isochorismatase signature 80 99 9.3E-52 T 29-03-2018 IPR016291 Isochorismatase GO:0008908 MetaCyc: PWY-5901 AM354_RS12520 ddcab2e023a6bf7178baad9be570f3e4 286 PRINTS PR01398 Isochorismatase signature 186 203 9.3E-52 T 29-03-2018 IPR016291 Isochorismatase GO:0008908 MetaCyc: PWY-5901 AM354_RS12520 ddcab2e023a6bf7178baad9be570f3e4 286 PIRSF PIRSF001111 1 286 1.6E-135 T 29-03-2018 IPR016291 Isochorismatase GO:0008908 MetaCyc: PWY-5901 AM354_RS12520 ddcab2e023a6bf7178baad9be570f3e4 286 Gene3D G3DSA:3.40.50.850 1 208 5.9E-50 T 29-03-2018 AM354_RS12520 ddcab2e023a6bf7178baad9be570f3e4 286 Pfam PF00857 Isochorismatase family 32 204 7.5E-39 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM354_RS12520 ddcab2e023a6bf7178baad9be570f3e4 286 Gene3D G3DSA:1.10.1200.10 209 284 1.4E-8 T 29-03-2018 AM354_RS12520 ddcab2e023a6bf7178baad9be570f3e4 286 SUPERFAMILY SSF52499 1 208 2.62E-65 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM354_RS12520 ddcab2e023a6bf7178baad9be570f3e4 286 Pfam PF00550 Phosphopantetheine attachment site 217 277 4.9E-6 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS20295 437dbede186fee21023de03579cb0eb5 443 Pfam PF09179 TilS substrate binding domain 246 313 4.6E-19 T 29-03-2018 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AM354_RS20295 437dbede186fee21023de03579cb0eb5 443 SUPERFAMILY SSF82829 232 317 7.85E-25 T 29-03-2018 AM354_RS20295 437dbede186fee21023de03579cb0eb5 443 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 19 201 1.4E-49 T 29-03-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AM354_RS20295 437dbede186fee21023de03579cb0eb5 443 SUPERFAMILY SSF56037 321 436 3.4E-31 T 29-03-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 AM354_RS20295 437dbede186fee21023de03579cb0eb5 443 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 7 305 23.404 T 29-03-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AM354_RS20295 437dbede186fee21023de03579cb0eb5 443 Pfam PF01171 PP-loop family 20 196 2.5E-55 T 29-03-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 AM354_RS20295 437dbede186fee21023de03579cb0eb5 443 TIGRFAM TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain 374 406 1.5E-13 T 29-03-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AM354_RS20295 437dbede186fee21023de03579cb0eb5 443 SUPERFAMILY SSF52402 13 231 1.28E-63 T 29-03-2018 AM354_RS20295 437dbede186fee21023de03579cb0eb5 443 Gene3D G3DSA:3.40.50.620 12 225 2.8E-38 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS20295 437dbede186fee21023de03579cb0eb5 443 Pfam PF11734 TilS substrate C-terminal domain 361 434 2.7E-27 T 29-03-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AM354_RS20295 437dbede186fee21023de03579cb0eb5 443 SMART SM00977 361 434 2.0E-25 T 29-03-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AM354_RS11020 2ce3ba872bf63637a4332e83abbd8d8b 333 SMART SM00829 15 331 4.5E-10 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AM354_RS11020 2ce3ba872bf63637a4332e83abbd8d8b 333 Gene3D G3DSA:3.40.50.720 139 298 4.6E-27 T 29-03-2018 AM354_RS11020 2ce3ba872bf63637a4332e83abbd8d8b 333 Pfam PF13602 Zinc-binding dehydrogenase 192 331 2.7E-20 T 29-03-2018 AM354_RS11020 2ce3ba872bf63637a4332e83abbd8d8b 333 TIGRFAM TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein 12 331 7.2E-116 T 29-03-2018 IPR014182 Alcohol dehydrogenase, zinc-binding type 1 GO:0008270 AM354_RS11020 2ce3ba872bf63637a4332e83abbd8d8b 333 Gene3D G3DSA:3.90.180.10 2 138 2.5E-30 T 29-03-2018 AM354_RS11020 2ce3ba872bf63637a4332e83abbd8d8b 333 SUPERFAMILY SSF51735 116 282 7.59E-33 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS11020 2ce3ba872bf63637a4332e83abbd8d8b 333 SUPERFAMILY SSF50129 11 142 4.26E-31 T 29-03-2018 IPR011032 GroES-like AM354_RS11020 2ce3ba872bf63637a4332e83abbd8d8b 333 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 30 88 2.7E-8 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AM354_RS02440 3a92a34020aa9a3a706dbf345acd922e 399 SUPERFAMILY SSF103473 209 390 9.16E-30 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS02440 3a92a34020aa9a3a706dbf345acd922e 399 Gene3D G3DSA:1.20.1250.20 3 195 2.4E-38 T 29-03-2018 AM354_RS02440 3a92a34020aa9a3a706dbf345acd922e 399 Pfam PF00083 Sugar (and other) transporter 249 380 7.1E-6 T 29-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AM354_RS02440 3a92a34020aa9a3a706dbf345acd922e 399 Pfam PF07690 Major Facilitator Superfamily 11 238 8.7E-32 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS02440 3a92a34020aa9a3a706dbf345acd922e 399 SUPERFAMILY SSF103473 6 218 1.15E-42 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS02440 3a92a34020aa9a3a706dbf345acd922e 399 Gene3D G3DSA:1.20.1250.20 196 387 1.2E-25 T 29-03-2018 AM354_RS02440 3a92a34020aa9a3a706dbf345acd922e 399 PRINTS PR01035 Tetracycline resistance protein signature 17 33 4.0E-12 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AM354_RS02440 3a92a34020aa9a3a706dbf345acd922e 399 PRINTS PR01035 Tetracycline resistance protein signature 79 103 4.0E-12 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AM354_RS02440 3a92a34020aa9a3a706dbf345acd922e 399 PRINTS PR01035 Tetracycline resistance protein signature 136 158 4.0E-12 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AM354_RS02440 3a92a34020aa9a3a706dbf345acd922e 399 PRINTS PR01035 Tetracycline resistance protein signature 340 363 4.0E-12 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AM354_RS02440 3a92a34020aa9a3a706dbf345acd922e 399 PRINTS PR01035 Tetracycline resistance protein signature 106 127 4.0E-12 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AM354_RS12740 416b9233a7fa4866710c4eb7fce56f5e 1342 Gene3D G3DSA:3.90.1100.10 647 713 2.4E-14 T 29-03-2018 AM354_RS12740 416b9233a7fa4866710c4eb7fce56f5e 1342 Gene3D G3DSA:3.90.1100.10 19 248 2.7E-50 T 29-03-2018 AM354_RS12740 416b9233a7fa4866710c4eb7fce56f5e 1342 Gene3D G3DSA:3.90.1100.10 249 646 2.3E-79 T 29-03-2018 AM354_RS12740 416b9233a7fa4866710c4eb7fce56f5e 1342 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 8 1339 0.0 T 29-03-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM354_RS12740 416b9233a7fa4866710c4eb7fce56f5e 1342 Gene3D G3DSA:2.40.50.100 715 795 4.7E-27 T 29-03-2018 AM354_RS12740 416b9233a7fa4866710c4eb7fce56f5e 1342 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 13 1342 12.319 T 29-03-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM354_RS12740 416b9233a7fa4866710c4eb7fce56f5e 1342 Gene3D G3DSA:2.40.50.150 814 949 4.1E-29 T 29-03-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM354_RS12740 416b9233a7fa4866710c4eb7fce56f5e 1342 Gene3D G3DSA:2.40.270.10 1022 1242 4.4E-80 T 29-03-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM354_RS12740 416b9233a7fa4866710c4eb7fce56f5e 1342 SUPERFAMILY SSF64484 343 939 0.0 T 29-03-2018 AM354_RS12740 416b9233a7fa4866710c4eb7fce56f5e 1342 SUPERFAMILY SSF64484 11 226 0.0 T 29-03-2018 AM354_RS12740 416b9233a7fa4866710c4eb7fce56f5e 1342 SUPERFAMILY SSF64484 1039 1341 0.0 T 29-03-2018 AM354_RS12740 416b9233a7fa4866710c4eb7fce56f5e 1342 Pfam PF04565 RNA polymerase Rpb2, domain 3 513 580 1.5E-30 T 29-03-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM354_RS12740 416b9233a7fa4866710c4eb7fce56f5e 1342 Pfam PF04560 RNA polymerase Rpb2, domain 7 1266 1340 3.3E-27 T 29-03-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM354_RS12740 416b9233a7fa4866710c4eb7fce56f5e 1342 Pfam PF10385 RNA polymerase beta subunit external 1 domain 591 656 4.3E-27 T 29-03-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM354_RS12740 416b9233a7fa4866710c4eb7fce56f5e 1342 Gene3D G3DSA:3.90.1800.10 1267 1311 7.4E-12 T 29-03-2018 AM354_RS12740 416b9233a7fa4866710c4eb7fce56f5e 1342 Pfam PF04563 RNA polymerase beta subunit 26 500 3.4E-57 T 29-03-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM354_RS12740 416b9233a7fa4866710c4eb7fce56f5e 1342 Pfam PF00562 RNA polymerase Rpb2, domain 6 717 1264 2.7E-160 T 29-03-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM354_RS12740 416b9233a7fa4866710c4eb7fce56f5e 1342 Pfam PF04561 RNA polymerase Rpb2, domain 2 151 225 1.9E-7 T 29-03-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM354_RS12740 416b9233a7fa4866710c4eb7fce56f5e 1342 Pfam PF04561 RNA polymerase Rpb2, domain 2 336 454 5.7E-15 T 29-03-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM354_RS12740 416b9233a7fa4866710c4eb7fce56f5e 1342 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1063 1075 - T 29-03-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM354_RS21220 f7a18502c06c24f768d044ed4cf20d17 244 PIRSF PIRSF004808 1 243 8.3E-78 T 29-03-2018 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 AM354_RS21220 f7a18502c06c24f768d044ed4cf20d17 244 Pfam PF00588 SpoU rRNA Methylase family 5 154 1.3E-33 T 29-03-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AM354_RS21220 f7a18502c06c24f768d044ed4cf20d17 244 Gene3D G3DSA:3.40.1280.10 1 165 3.1E-43 T 29-03-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AM354_RS21220 f7a18502c06c24f768d044ed4cf20d17 244 SUPERFAMILY SSF75217 3 165 3.53E-39 T 29-03-2018 IPR029028 Alpha/beta knot methyltransferases AM354_RS21220 f7a18502c06c24f768d044ed4cf20d17 244 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 1 238 3.9E-88 T 29-03-2018 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 AM354_RS04305 060fb275461578eafd795373304a9750 1157 SUPERFAMILY SSF143517 1000 1152 1.31E-43 T 29-03-2018 AM354_RS04305 060fb275461578eafd795373304a9750 1157 Pfam PF03461 TRCF domain 1014 1105 2.1E-28 T 29-03-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 AM354_RS04305 060fb275461578eafd795373304a9750 1157 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 39 1146 28.775 T 29-03-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 AM354_RS04305 060fb275461578eafd795373304a9750 1157 Gene3D G3DSA:3.40.50.300 140 793 6.2E-42 T 29-03-2018 AM354_RS04305 060fb275461578eafd795373304a9750 1157 SUPERFAMILY SSF52540 20 348 5.31E-101 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS04305 060fb275461578eafd795373304a9750 1157 Pfam PF00271 Helicase conserved C-terminal domain 810 914 9.0E-18 T 29-03-2018 IPR001650 Helicase, C-terminal AM354_RS04305 060fb275461578eafd795373304a9750 1157 SMART SM00982 1013 1113 2.0E-48 T 29-03-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 AM354_RS04305 060fb275461578eafd795373304a9750 1157 SUPERFAMILY SSF52540 787 995 2.38E-49 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS04305 060fb275461578eafd795373304a9750 1157 SMART SM00487 605 795 2.4E-33 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AM354_RS04305 060fb275461578eafd795373304a9750 1157 SUPERFAMILY SSF52540 528 788 6.07E-64 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS04305 060fb275461578eafd795373304a9750 1157 Gene3D G3DSA:3.40.50.300 794 961 2.0E-26 T 29-03-2018 AM354_RS04305 060fb275461578eafd795373304a9750 1157 SMART SM01058 484 581 9.4E-52 T 29-03-2018 IPR003711 CarD-like/TRCF domain AM354_RS04305 060fb275461578eafd795373304a9750 1157 Pfam PF00270 DEAD/DEAH box helicase 610 770 1.4E-20 T 29-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AM354_RS04305 060fb275461578eafd795373304a9750 1157 SUPERFAMILY SSF141259 476 553 4.58E-24 T 29-03-2018 IPR003711 CarD-like/TRCF domain AM354_RS04305 060fb275461578eafd795373304a9750 1157 SUPERFAMILY SSF52540 358 471 1.46E-26 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS04305 060fb275461578eafd795373304a9750 1157 Pfam PF02559 CarD-like/TRCF domain 485 580 2.6E-25 T 29-03-2018 IPR003711 CarD-like/TRCF domain AM354_RS04305 060fb275461578eafd795373304a9750 1157 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 153 1087 0.0 T 29-03-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 AM354_RS04305 060fb275461578eafd795373304a9750 1157 SMART SM00490 831 915 2.2E-19 T 29-03-2018 IPR001650 Helicase, C-terminal AM354_RS16350 6b0b3b633229fe4e48388763b49c0473 1608 Gene3D G3DSA:2.160.20.10 1083 1239 0.089 T 29-03-2018 IPR012334 Pectin lyase fold AM354_RS16350 6b0b3b633229fe4e48388763b49c0473 1608 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 66 159 4.7E-17 T 29-03-2018 IPR008638 Filamentous haemagglutinin, N-terminal AM354_RS16350 6b0b3b633229fe4e48388763b49c0473 1608 Pfam PF13332 Haemagluttinin repeat 1108 1204 3.7E-10 T 29-03-2018 IPR025157 Hemagglutinin repeat AM354_RS16350 6b0b3b633229fe4e48388763b49c0473 1608 Pfam PF13332 Haemagluttinin repeat 394 455 4.5E-8 T 29-03-2018 IPR025157 Hemagglutinin repeat AM354_RS16350 6b0b3b633229fe4e48388763b49c0473 1608 Pfam PF13332 Haemagluttinin repeat 805 890 9.2E-5 T 29-03-2018 IPR025157 Hemagglutinin repeat AM354_RS16350 6b0b3b633229fe4e48388763b49c0473 1608 Pfam PF13332 Haemagluttinin repeat 924 1086 8.9E-20 T 29-03-2018 IPR025157 Hemagglutinin repeat AM354_RS16350 6b0b3b633229fe4e48388763b49c0473 1608 Pfam PF13332 Haemagluttinin repeat 471 588 0.001 T 29-03-2018 IPR025157 Hemagglutinin repeat AM354_RS16350 6b0b3b633229fe4e48388763b49c0473 1608 Pfam PF13332 Haemagluttinin repeat 1212 1373 3.0E-25 T 29-03-2018 IPR025157 Hemagglutinin repeat AM354_RS16350 6b0b3b633229fe4e48388763b49c0473 1608 Pfam PF13332 Haemagluttinin repeat 623 784 7.5E-13 T 29-03-2018 IPR025157 Hemagglutinin repeat AM354_RS16350 6b0b3b633229fe4e48388763b49c0473 1608 Pfam PF05860 haemagglutination activity domain 32 166 1.3E-30 T 29-03-2018 IPR008638 Filamentous haemagglutinin, N-terminal AM354_RS16350 6b0b3b633229fe4e48388763b49c0473 1608 SMART SM00912 48 168 5.7E-44 T 29-03-2018 IPR008638 Filamentous haemagglutinin, N-terminal AM354_RS16350 6b0b3b633229fe4e48388763b49c0473 1608 SUPERFAMILY SSF51126 40 298 1.38E-52 T 29-03-2018 IPR011050 Pectin lyase fold/virulence factor AM354_RS16350 6b0b3b633229fe4e48388763b49c0473 1608 SUPERFAMILY SSF51126 360 378 1.38E-52 T 29-03-2018 IPR011050 Pectin lyase fold/virulence factor AM354_RS16350 6b0b3b633229fe4e48388763b49c0473 1608 Gene3D G3DSA:2.160.20.10 34 330 1.2E-42 T 29-03-2018 IPR012334 Pectin lyase fold AM354_RS20455 41e0b50efae1056474dc8d158c2f0ec3 333 SUPERFAMILY SSF53850 25 327 2.58E-93 T 29-03-2018 AM354_RS20455 41e0b50efae1056474dc8d158c2f0ec3 333 Gene3D G3DSA:3.40.190.10 23 156 2.1E-16 T 29-03-2018 AM354_RS20455 41e0b50efae1056474dc8d158c2f0ec3 333 Gene3D G3DSA:3.40.190.10 157 327 8.5E-37 T 29-03-2018 AM354_RS20455 41e0b50efae1056474dc8d158c2f0ec3 333 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 34 314 4.1E-55 T 29-03-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 AM354_RS10925 00e13654ebab7d59418b8de369a05a19 309 Pfam PF08544 GHMP kinases C terminal 212 281 5.5E-10 T 29-03-2018 IPR013750 GHMP kinase, C-terminal domain AM354_RS10925 00e13654ebab7d59418b8de369a05a19 309 SUPERFAMILY SSF54211 1 178 3.11E-31 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM354_RS10925 00e13654ebab7d59418b8de369a05a19 309 PRINTS PR00958 Homoserine kinase signature 254 269 6.8E-33 T 29-03-2018 AM354_RS10925 00e13654ebab7d59418b8de369a05a19 309 PRINTS PR00958 Homoserine kinase signature 175 192 6.8E-33 T 29-03-2018 AM354_RS10925 00e13654ebab7d59418b8de369a05a19 309 PRINTS PR00958 Homoserine kinase signature 137 150 6.8E-33 T 29-03-2018 AM354_RS10925 00e13654ebab7d59418b8de369a05a19 309 PRINTS PR00958 Homoserine kinase signature 9 24 6.8E-33 T 29-03-2018 AM354_RS10925 00e13654ebab7d59418b8de369a05a19 309 PRINTS PR00958 Homoserine kinase signature 97 112 6.8E-33 T 29-03-2018 AM354_RS10925 00e13654ebab7d59418b8de369a05a19 309 Gene3D G3DSA:3.30.230.10 1 165 4.9E-25 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AM354_RS10925 00e13654ebab7d59418b8de369a05a19 309 SUPERFAMILY SSF55060 173 289 9.21E-33 T 29-03-2018 IPR013750 GHMP kinase, C-terminal domain AM354_RS10925 00e13654ebab7d59418b8de369a05a19 309 Pfam PF00288 GHMP kinases N terminal domain 85 150 5.1E-14 T 29-03-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 AM354_RS10925 00e13654ebab7d59418b8de369a05a19 309 TIGRFAM TIGR00191 thrB: homoserine kinase 2 307 8.3E-113 T 29-03-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 AM354_RS10925 00e13654ebab7d59418b8de369a05a19 309 Gene3D G3DSA:3.30.70.890 167 309 4.4E-30 T 29-03-2018 IPR013750 GHMP kinase, C-terminal domain AM354_RS10925 00e13654ebab7d59418b8de369a05a19 309 PIRSF PIRSF000676 1 308 2.7E-84 T 29-03-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 AM354_RS10925 00e13654ebab7d59418b8de369a05a19 309 Hamap MF_00384 Homoserine kinase [thrB]. 2 307 30.413 T 29-03-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 AM354_RS10925 00e13654ebab7d59418b8de369a05a19 309 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 90 101 - T 29-03-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 AM354_RS18520 907d0dfdb0d250508a9ca6da29d30f3a 121 SUPERFAMILY SSF46955 4 108 3.3E-16 T 29-03-2018 IPR009061 Putative DNA-binding domain AM354_RS18520 907d0dfdb0d250508a9ca6da29d30f3a 121 Pfam PF13411 MerR HTH family regulatory protein 4 72 8.2E-11 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS18520 907d0dfdb0d250508a9ca6da29d30f3a 121 TIGRFAM TIGR02054 MerD: mercuric resistence transcriptional repressor protein MerD 1 119 9.1E-63 T 29-03-2018 IPR011797 Mercuric resistence transcriptional repressor protein MerD GO:0003677|GO:0045892|GO:0046689 AM354_RS18520 907d0dfdb0d250508a9ca6da29d30f3a 121 Gene3D G3DSA:1.10.1660.10 1 121 6.5E-18 T 29-03-2018 AM354_RS18520 907d0dfdb0d250508a9ca6da29d30f3a 121 SMART SM00422 4 73 5.0E-20 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS18520 907d0dfdb0d250508a9ca6da29d30f3a 121 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 16 29 8.0E-15 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS18520 907d0dfdb0d250508a9ca6da29d30f3a 121 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 40 60 8.0E-15 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS18520 907d0dfdb0d250508a9ca6da29d30f3a 121 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 5 16 8.0E-15 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS17805 5e7e98f2c84c323a76a61bd534f05c1d 116 Gene3D G3DSA:1.20.1260.10 10 115 3.4E-29 T 29-03-2018 IPR012347 Ferritin-related AM354_RS17805 5e7e98f2c84c323a76a61bd534f05c1d 116 Pfam PF03713 Domain of unknown function (DUF305) 24 112 8.4E-22 T 29-03-2018 IPR005183 Domain of unknown function DUF305 AM354_RS00420 4252a222f9d49fae26099b6658735077 447 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 420 1.1E-141 T 29-03-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 AM354_RS00420 4252a222f9d49fae26099b6658735077 447 Gene3D G3DSA:3.40.50.720 1 202 1.8E-62 T 29-03-2018 AM354_RS00420 4252a222f9d49fae26099b6658735077 447 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 204 295 2.3E-39 T 29-03-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AM354_RS00420 4252a222f9d49fae26099b6658735077 447 SUPERFAMILY SSF51735 1 195 1.87E-58 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS00420 4252a222f9d49fae26099b6658735077 447 Gene3D G3DSA:1.20.5.170 204 227 9.1E-15 T 29-03-2018 AM354_RS00420 4252a222f9d49fae26099b6658735077 447 SMART SM00984 320 424 6.3E-51 T 29-03-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AM354_RS00420 4252a222f9d49fae26099b6658735077 447 Gene3D G3DSA:3.40.50.720 228 436 1.8E-73 T 29-03-2018 AM354_RS00420 4252a222f9d49fae26099b6658735077 447 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 320 424 5.7E-30 T 29-03-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AM354_RS00420 4252a222f9d49fae26099b6658735077 447 PIRSF PIRSF000124 1 439 1.1E-152 T 29-03-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 AM354_RS00420 4252a222f9d49fae26099b6658735077 447 PIRSF PIRSF500134 1 442 2.5E-194 T 29-03-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 AM354_RS00420 4252a222f9d49fae26099b6658735077 447 SUPERFAMILY SSF48179 203 301 1.11E-34 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM354_RS00420 4252a222f9d49fae26099b6658735077 447 SUPERFAMILY SSF52413 310 435 4.19E-40 T 29-03-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AM354_RS00420 4252a222f9d49fae26099b6658735077 447 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 183 6.0E-66 T 29-03-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AM354_RS18640 0d7a21a4d3e250c78765324f3634fc1e 398 Gene3D G3DSA:1.20.1250.20 208 396 2.3E-19 T 29-03-2018 AM354_RS18640 0d7a21a4d3e250c78765324f3634fc1e 398 SUPERFAMILY SSF103473 16 388 2.22E-40 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS18640 0d7a21a4d3e250c78765324f3634fc1e 398 Pfam PF07690 Major Facilitator Superfamily 18 250 2.4E-17 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS18640 0d7a21a4d3e250c78765324f3634fc1e 398 Gene3D G3DSA:1.20.1250.20 1 207 2.0E-22 T 29-03-2018 AM354_RS02845 34dbae47f5282234a08f4861f44fae57 393 Pfam PF00155 Aminotransferase class I and II 30 381 2.4E-54 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM354_RS02845 34dbae47f5282234a08f4861f44fae57 393 Gene3D G3DSA:3.90.1150.10 271 384 7.6E-25 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS02845 34dbae47f5282234a08f4861f44fae57 393 SUPERFAMILY SSF53383 1 384 4.26E-88 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS02845 34dbae47f5282234a08f4861f44fae57 393 Gene3D G3DSA:3.40.640.10 42 270 6.0E-38 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS02845 34dbae47f5282234a08f4861f44fae57 393 TIGRFAM TIGR04350 C_S_lyase_PatB: putative C-S lyase 4 384 9.4E-116 T 29-03-2018 IPR027619 Putative C-S lyase KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8|MetaCyc: PWY-6936 AM354_RS00040 66551f61e6785f83b0773d3856e621f3 594 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 1 586 9.0E-274 T 29-03-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 AM354_RS00040 66551f61e6785f83b0773d3856e621f3 594 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 1 584 33.617 T 29-03-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 AM354_RS00040 66551f61e6785f83b0773d3856e621f3 594 Gene3D G3DSA:3.30.930.10 131 586 3.7E-102 T 29-03-2018 AM354_RS00040 66551f61e6785f83b0773d3856e621f3 594 SUPERFAMILY SSF50249 1 105 4.0E-33 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS00040 66551f61e6785f83b0773d3856e621f3 594 SUPERFAMILY SSF55261 288 419 7.36E-46 T 29-03-2018 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 AM354_RS00040 66551f61e6785f83b0773d3856e621f3 594 PRINTS PR01042 Aspartyl-tRNA synthetase signature 518 532 1.2E-26 T 29-03-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS00040 66551f61e6785f83b0773d3856e621f3 594 PRINTS PR01042 Aspartyl-tRNA synthetase signature 474 490 1.2E-26 T 29-03-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS00040 66551f61e6785f83b0773d3856e621f3 594 PRINTS PR01042 Aspartyl-tRNA synthetase signature 190 202 1.2E-26 T 29-03-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS00040 66551f61e6785f83b0773d3856e621f3 594 PRINTS PR01042 Aspartyl-tRNA synthetase signature 207 220 1.2E-26 T 29-03-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS00040 66551f61e6785f83b0773d3856e621f3 594 Gene3D G3DSA:2.40.50.140 1 108 1.4E-24 T 29-03-2018 AM354_RS00040 66551f61e6785f83b0773d3856e621f3 594 SUPERFAMILY SSF55681 108 287 6.13E-106 T 29-03-2018 AM354_RS00040 66551f61e6785f83b0773d3856e621f3 594 SUPERFAMILY SSF55681 420 584 6.13E-106 T 29-03-2018 AM354_RS00040 66551f61e6785f83b0773d3856e621f3 594 Pfam PF00152 tRNA synthetases class II (D, K and N) 117 558 4.4E-107 T 29-03-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS00040 66551f61e6785f83b0773d3856e621f3 594 Pfam PF02938 GAD domain 307 406 4.1E-31 T 29-03-2018 IPR029351 GAD domain Reactome: R-HSA-379726 AM354_RS00040 66551f61e6785f83b0773d3856e621f3 594 Pfam PF01336 OB-fold nucleic acid binding domain 18 102 3.4E-15 T 29-03-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 AM354_RS00075 afca0e01f3342deb8b9979a0543a4345 252 Pfam PF00005 ABC transporter 20 149 8.3E-30 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS00075 afca0e01f3342deb8b9979a0543a4345 252 SUPERFAMILY SSF52540 3 215 1.49E-53 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS00075 afca0e01f3342deb8b9979a0543a4345 252 Gene3D G3DSA:3.40.50.300 1 246 3.9E-55 T 29-03-2018 AM354_RS00075 afca0e01f3342deb8b9979a0543a4345 252 SMART SM00382 29 199 7.7E-10 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS18635 703f96c913af49203c9f85ac7443f4d7 275 PRINTS PR01438 Universal stress protein signature 158 176 7.3E-6 T 29-03-2018 IPR006015 Universal stress protein A AM354_RS18635 703f96c913af49203c9f85ac7443f4d7 275 PRINTS PR01438 Universal stress protein signature 235 247 7.3E-6 T 29-03-2018 IPR006015 Universal stress protein A AM354_RS18635 703f96c913af49203c9f85ac7443f4d7 275 PRINTS PR01438 Universal stress protein signature 253 275 7.3E-6 T 29-03-2018 IPR006015 Universal stress protein A AM354_RS18635 703f96c913af49203c9f85ac7443f4d7 275 Pfam PF00582 Universal stress protein family 1 152 6.2E-16 T 29-03-2018 IPR006016 UspA GO:0006950 AM354_RS18635 703f96c913af49203c9f85ac7443f4d7 275 Pfam PF00582 Universal stress protein family 201 275 2.1E-10 T 29-03-2018 IPR006016 UspA GO:0006950 AM354_RS18635 703f96c913af49203c9f85ac7443f4d7 275 SUPERFAMILY SSF52402 158 275 2.6E-21 T 29-03-2018 AM354_RS18635 703f96c913af49203c9f85ac7443f4d7 275 Gene3D G3DSA:3.40.50.620 1 155 8.2E-16 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS18635 703f96c913af49203c9f85ac7443f4d7 275 SUPERFAMILY SSF52402 1 152 4.35E-16 T 29-03-2018 AM354_RS18635 703f96c913af49203c9f85ac7443f4d7 275 Gene3D G3DSA:3.40.50.620 156 275 6.2E-19 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS18625 8dd1b08888512d356fcbbaf61caa55ff 117 SMART SM00418 8 86 4.1E-30 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS18625 8dd1b08888512d356fcbbaf61caa55ff 117 SUPERFAMILY SSF46785 2 105 6.68E-27 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS18625 8dd1b08888512d356fcbbaf61caa55ff 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 10 25 1.1E-24 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS18625 8dd1b08888512d356fcbbaf61caa55ff 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 58 73 1.1E-24 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS18625 8dd1b08888512d356fcbbaf61caa55ff 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 43 58 1.1E-24 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS18625 8dd1b08888512d356fcbbaf61caa55ff 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 30 41 1.1E-24 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS18625 8dd1b08888512d356fcbbaf61caa55ff 117 Gene3D G3DSA:1.10.10.10 6 113 6.5E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS18625 8dd1b08888512d356fcbbaf61caa55ff 117 Pfam PF01022 Bacterial regulatory protein, arsR family 15 61 1.8E-14 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS10030 9d136f2e11bda0fc42f4790935713aaa 243 SUPERFAMILY SSF48452 26 119 6.64E-8 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS10030 9d136f2e11bda0fc42f4790935713aaa 243 Pfam PF13525 Outer membrane lipoprotein 28 236 7.6E-83 T 29-03-2018 AM354_RS10030 9d136f2e11bda0fc42f4790935713aaa 243 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 4 242 38.177 T 29-03-2018 IPR017689 Outer membrane protein assembly factor BamD AM354_RS10030 9d136f2e11bda0fc42f4790935713aaa 243 Gene3D G3DSA:1.25.20.10 30 243 1.0E-14 T 29-03-2018 AM354_RS10030 9d136f2e11bda0fc42f4790935713aaa 243 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 5 241 2.0E-86 T 29-03-2018 IPR017689 Outer membrane protein assembly factor BamD AM354_RS05820 fac6c6a66398ee88f575d534919d3bf6 333 Gene3D G3DSA:3.10.20.30 235 333 4.7E-22 T 29-03-2018 IPR012675 Beta-grasp domain AM354_RS05820 fac6c6a66398ee88f575d534919d3bf6 333 SUPERFAMILY SSF54292 227 332 1.84E-24 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM354_RS05820 fac6c6a66398ee88f575d534919d3bf6 333 SUPERFAMILY SSF63380 11 104 2.11E-19 T 29-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AM354_RS05820 fac6c6a66398ee88f575d534919d3bf6 333 SUPERFAMILY SSF52343 104 238 6.16E-33 T 29-03-2018 AM354_RS05820 fac6c6a66398ee88f575d534919d3bf6 333 PRINTS PR00406 Cytochrome B5 reductase signature 115 134 2.8E-5 T 29-03-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 AM354_RS05820 fac6c6a66398ee88f575d534919d3bf6 333 PRINTS PR00406 Cytochrome B5 reductase signature 205 213 2.8E-5 T 29-03-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 AM354_RS05820 fac6c6a66398ee88f575d534919d3bf6 333 PRINTS PR00406 Cytochrome B5 reductase signature 55 62 2.8E-5 T 29-03-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 AM354_RS05820 fac6c6a66398ee88f575d534919d3bf6 333 Gene3D G3DSA:2.40.30.10 9 105 5.1E-16 T 29-03-2018 AM354_RS05820 fac6c6a66398ee88f575d534919d3bf6 333 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 259 325 6.4E-13 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM354_RS05820 fac6c6a66398ee88f575d534919d3bf6 333 Pfam PF00175 Oxidoreductase NAD-binding domain 116 219 3.6E-13 T 29-03-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AM354_RS05820 fac6c6a66398ee88f575d534919d3bf6 333 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 284 292 - T 29-03-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AM354_RS05820 fac6c6a66398ee88f575d534919d3bf6 333 Gene3D G3DSA:3.40.50.80 106 234 5.3E-30 T 29-03-2018 AM354_RS05820 fac6c6a66398ee88f575d534919d3bf6 333 Pfam PF00970 Oxidoreductase FAD-binding domain 37 104 2.3E-7 T 29-03-2018 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 AM354_RS03405 29db0ceaf213ce79aa98264fea92b760 183 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 91 180 7.7E-36 T 29-03-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 AM354_RS03405 29db0ceaf213ce79aa98264fea92b760 183 ProSitePatterns PS00938 Initiation factor 3 signature. 66 79 - T 29-03-2018 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 AM354_RS03405 29db0ceaf213ce79aa98264fea92b760 183 Gene3D G3DSA:3.30.110.10 87 183 1.0E-33 T 29-03-2018 AM354_RS03405 29db0ceaf213ce79aa98264fea92b760 183 SUPERFAMILY SSF55200 90 182 2.49E-32 T 29-03-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 AM354_RS03405 29db0ceaf213ce79aa98264fea92b760 183 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 9 182 30.596 T 29-03-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AM354_RS03405 29db0ceaf213ce79aa98264fea92b760 183 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 15 182 2.3E-74 T 29-03-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AM354_RS03405 29db0ceaf213ce79aa98264fea92b760 183 SUPERFAMILY SSF54364 13 86 2.48E-29 T 29-03-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AM354_RS03405 29db0ceaf213ce79aa98264fea92b760 183 Gene3D G3DSA:3.10.20.80 10 86 6.2E-32 T 29-03-2018 AM354_RS03405 29db0ceaf213ce79aa98264fea92b760 183 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 15 84 1.2E-31 T 29-03-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AM354_RS18525 16ddae70aadf05529137c31d42767e08 548 PRINTS PR00945 Mercuric reductase class II signature 132 151 6.9E-93 T 29-03-2018 AM354_RS18525 16ddae70aadf05529137c31d42767e08 548 PRINTS PR00945 Mercuric reductase class II signature 521 540 6.9E-93 T 29-03-2018 AM354_RS18525 16ddae70aadf05529137c31d42767e08 548 PRINTS PR00945 Mercuric reductase class II signature 259 276 6.9E-93 T 29-03-2018 AM354_RS18525 16ddae70aadf05529137c31d42767e08 548 PRINTS PR00945 Mercuric reductase class II signature 97 115 6.9E-93 T 29-03-2018 AM354_RS18525 16ddae70aadf05529137c31d42767e08 548 PRINTS PR00945 Mercuric reductase class II signature 13 23 6.9E-93 T 29-03-2018 AM354_RS18525 16ddae70aadf05529137c31d42767e08 548 PRINTS PR00945 Mercuric reductase class II signature 224 241 6.9E-93 T 29-03-2018 AM354_RS18525 16ddae70aadf05529137c31d42767e08 548 PRINTS PR00945 Mercuric reductase class II signature 279 294 6.9E-93 T 29-03-2018 AM354_RS18525 16ddae70aadf05529137c31d42767e08 548 PRINTS PR00945 Mercuric reductase class II signature 456 476 6.9E-93 T 29-03-2018 AM354_RS18525 16ddae70aadf05529137c31d42767e08 548 Gene3D G3DSA:3.50.50.60 243 292 9.6E-8 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS18525 16ddae70aadf05529137c31d42767e08 548 Pfam PF00403 Heavy-metal-associated domain 4 63 4.0E-13 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AM354_RS18525 16ddae70aadf05529137c31d42767e08 548 Gene3D G3DSA:3.30.70.100 1 68 5.2E-18 T 29-03-2018 AM354_RS18525 16ddae70aadf05529137c31d42767e08 548 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 120 130 - T 29-03-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 AM354_RS18525 16ddae70aadf05529137c31d42767e08 548 Gene3D G3DSA:3.50.50.60 293 417 1.2E-21 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS18525 16ddae70aadf05529137c31d42767e08 548 PIRSF PIRSF000350 1 548 1.7E-264 T 29-03-2018 AM354_RS18525 16ddae70aadf05529137c31d42767e08 548 Gene3D G3DSA:3.30.390.30 423 548 1.1E-35 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AM354_RS18525 16ddae70aadf05529137c31d42767e08 548 SUPERFAMILY SSF55008 2 64 7.85E-16 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AM354_RS18525 16ddae70aadf05529137c31d42767e08 548 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 424 532 2.0E-29 T 29-03-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AM354_RS18525 16ddae70aadf05529137c31d42767e08 548 SUPERFAMILY SSF51905 184 276 6.69E-52 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS18525 16ddae70aadf05529137c31d42767e08 548 SUPERFAMILY SSF51905 88 136 6.69E-52 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS18525 16ddae70aadf05529137c31d42767e08 548 SUPERFAMILY SSF51905 303 444 6.69E-52 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS18525 16ddae70aadf05529137c31d42767e08 548 TIGRFAM TIGR02053 MerA: mercury(II) reductase 87 548 4.7E-188 T 29-03-2018 IPR021179 Mercury(II) reductase GO:0016152|GO:0016491|GO:0045340|GO:0050660|GO:0050661|GO:0050787|GO:0055114 AM354_RS18525 16ddae70aadf05529137c31d42767e08 548 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 87 405 2.0E-63 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS18525 16ddae70aadf05529137c31d42767e08 548 Gene3D G3DSA:3.50.50.60 85 242 1.2E-30 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS18525 16ddae70aadf05529137c31d42767e08 548 ProSitePatterns PS01047 Heavy-metal-associated domain. 6 35 - T 29-03-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 AM354_RS18525 16ddae70aadf05529137c31d42767e08 548 SUPERFAMILY SSF55424 423 546 3.09E-33 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AM354_RS17815 924b1458a583968e94d4b6c21e4952cd 491 Pfam PF00512 His Kinase A (phospho-acceptor) domain 264 327 1.2E-10 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS17815 924b1458a583968e94d4b6c21e4952cd 491 SMART SM00304 208 261 8.0E-7 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM354_RS17815 924b1458a583968e94d4b6c21e4952cd 491 Gene3D G3DSA:3.30.450.20 37 143 0.0029 T 29-03-2018 AM354_RS17815 924b1458a583968e94d4b6c21e4952cd 491 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 372 480 1.7E-21 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS17815 924b1458a583968e94d4b6c21e4952cd 491 SUPERFAMILY SSF55874 317 481 5.76E-39 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS17815 924b1458a583968e94d4b6c21e4952cd 491 Gene3D G3DSA:1.10.287.130 252 324 5.3E-10 T 29-03-2018 AM354_RS17815 924b1458a583968e94d4b6c21e4952cd 491 TIGRFAM TIGR01386 cztS_silS_copS: heavy metal sensor kinase 9 480 5.5E-188 T 29-03-2018 IPR006290 Heavy metal sensor kinase GO:0000160|GO:0004673|GO:0016020 AM354_RS17815 924b1458a583968e94d4b6c21e4952cd 491 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 423 6.8E-10 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS17815 924b1458a583968e94d4b6c21e4952cd 491 PRINTS PR00344 Bacterial sensor protein C-terminal signature 427 437 6.8E-10 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS17815 924b1458a583968e94d4b6c21e4952cd 491 PRINTS PR00344 Bacterial sensor protein C-terminal signature 444 462 6.8E-10 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS17815 924b1458a583968e94d4b6c21e4952cd 491 PRINTS PR00344 Bacterial sensor protein C-terminal signature 467 480 6.8E-10 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS17815 924b1458a583968e94d4b6c21e4952cd 491 SMART SM00387 372 483 1.9E-37 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS17815 924b1458a583968e94d4b6c21e4952cd 491 SMART SM00388 262 328 1.7E-13 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS17815 924b1458a583968e94d4b6c21e4952cd 491 Gene3D G3DSA:3.30.565.10 332 489 1.9E-38 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS17815 924b1458a583968e94d4b6c21e4952cd 491 SUPERFAMILY SSF47384 245 329 5.69E-15 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS15925 bb3aa6c82682296002efcf35d2ed2a97 342 Gene3D G3DSA:1.10.260.40 16 57 2.2E-21 T 29-03-2018 AM354_RS15925 bb3aa6c82682296002efcf35d2ed2a97 342 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 29-03-2018 AM354_RS15925 bb3aa6c82682296002efcf35d2ed2a97 342 Pfam PF13377 Periplasmic binding protein-like domain 169 329 9.8E-35 T 29-03-2018 AM354_RS15925 bb3aa6c82682296002efcf35d2ed2a97 342 SUPERFAMILY SSF47413 1 56 4.29E-17 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS15925 bb3aa6c82682296002efcf35d2ed2a97 342 SUPERFAMILY SSF53822 61 331 1.71E-79 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS15925 bb3aa6c82682296002efcf35d2ed2a97 342 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 7.6E-7 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS15925 bb3aa6c82682296002efcf35d2ed2a97 342 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 7.6E-7 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS15925 bb3aa6c82682296002efcf35d2ed2a97 342 Gene3D G3DSA:3.40.50.2300 58 167 2.3E-24 T 29-03-2018 AM354_RS15925 bb3aa6c82682296002efcf35d2ed2a97 342 Gene3D G3DSA:3.40.50.2300 168 332 1.8E-45 T 29-03-2018 AM354_RS15925 bb3aa6c82682296002efcf35d2ed2a97 342 SMART SM00354 1 71 5.7E-31 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS15925 bb3aa6c82682296002efcf35d2ed2a97 342 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 1.4E-21 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS15925 bb3aa6c82682296002efcf35d2ed2a97 342 Gene3D G3DSA:1.10.10.60 1 15 0.011 T 29-03-2018 AM354_RS08045 7b32e471311a8eda5372400f095c8c77 430 Gene3D G3DSA:1.10.230.10 283 381 2.7E-37 T 29-03-2018 IPR016143 Citrate synthase-like, small alpha subdomain AM354_RS08045 7b32e471311a8eda5372400f095c8c77 430 PIRSF PIRSF001369 39 430 5.6E-173 T 29-03-2018 IPR024176 Citrate synthase, bacterial-type AM354_RS08045 7b32e471311a8eda5372400f095c8c77 430 Pfam PF00285 Citrate synthase, C-terminal domain 47 412 1.5E-132 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 AM354_RS08045 7b32e471311a8eda5372400f095c8c77 430 SUPERFAMILY SSF48256 7 424 2.49E-165 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 AM354_RS08045 7b32e471311a8eda5372400f095c8c77 430 Gene3D G3DSA:1.10.580.10 31 282 7.7E-88 T 29-03-2018 IPR016142 Citrate synthase-like, large alpha subdomain AM354_RS08045 7b32e471311a8eda5372400f095c8c77 430 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 16 423 1.7E-236 T 29-03-2018 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 AM354_RS08045 7b32e471311a8eda5372400f095c8c77 430 PRINTS PR00143 Citrate synthase signature 220 235 2.1E-56 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 AM354_RS08045 7b32e471311a8eda5372400f095c8c77 430 PRINTS PR00143 Citrate synthase signature 361 377 2.1E-56 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 AM354_RS08045 7b32e471311a8eda5372400f095c8c77 430 PRINTS PR00143 Citrate synthase signature 166 179 2.1E-56 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 AM354_RS08045 7b32e471311a8eda5372400f095c8c77 430 PRINTS PR00143 Citrate synthase signature 242 270 2.1E-56 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 AM354_RS08045 7b32e471311a8eda5372400f095c8c77 430 PRINTS PR00143 Citrate synthase signature 381 395 2.1E-56 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 AM354_RS08045 7b32e471311a8eda5372400f095c8c77 430 PRINTS PR00143 Citrate synthase signature 297 317 2.1E-56 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 AM354_RS08045 7b32e471311a8eda5372400f095c8c77 430 ProSitePatterns PS00480 Citrate synthase signature. 304 316 - T 29-03-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 AM354_RS13430 a8d88d53dbe199ad97bc51c6e78d3f23 867 PRINTS PR01439 Cellulose synthase subunit A signature 225 250 2.7E-58 T 29-03-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 AM354_RS13430 a8d88d53dbe199ad97bc51c6e78d3f23 867 PRINTS PR01439 Cellulose synthase subunit A signature 280 299 2.7E-58 T 29-03-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 AM354_RS13430 a8d88d53dbe199ad97bc51c6e78d3f23 867 PRINTS PR01439 Cellulose synthase subunit A signature 522 548 2.7E-58 T 29-03-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 AM354_RS13430 a8d88d53dbe199ad97bc51c6e78d3f23 867 PRINTS PR01439 Cellulose synthase subunit A signature 551 570 2.7E-58 T 29-03-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 AM354_RS13430 a8d88d53dbe199ad97bc51c6e78d3f23 867 PRINTS PR01439 Cellulose synthase subunit A signature 591 610 2.7E-58 T 29-03-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 AM354_RS13430 a8d88d53dbe199ad97bc51c6e78d3f23 867 PRINTS PR01439 Cellulose synthase subunit A signature 361 385 2.7E-58 T 29-03-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 AM354_RS13430 a8d88d53dbe199ad97bc51c6e78d3f23 867 PRINTS PR01439 Cellulose synthase subunit A signature 197 217 2.7E-58 T 29-03-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 AM354_RS13430 a8d88d53dbe199ad97bc51c6e78d3f23 867 PRINTS PR01439 Cellulose synthase subunit A signature 665 686 2.7E-58 T 29-03-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 AM354_RS13430 a8d88d53dbe199ad97bc51c6e78d3f23 867 Pfam PF03552 Cellulose synthase 449 569 2.0E-11 T 29-03-2018 IPR005150 Cellulose synthase GO:0016020|GO:0016760|GO:0030244 AM354_RS13430 a8d88d53dbe199ad97bc51c6e78d3f23 867 Gene3D G3DSA:2.40.10.220 688 796 6.6E-16 T 29-03-2018 AM354_RS13430 a8d88d53dbe199ad97bc51c6e78d3f23 867 SUPERFAMILY SSF141371 694 781 1.94E-7 T 29-03-2018 AM354_RS13430 a8d88d53dbe199ad97bc51c6e78d3f23 867 TIGRFAM TIGR03030 CelA: cellulose synthase catalytic subunit (UDP-forming) 145 827 7.6E-290 T 29-03-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 AM354_RS13430 a8d88d53dbe199ad97bc51c6e78d3f23 867 SUPERFAMILY SSF53448 270 548 1.38E-51 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS13430 a8d88d53dbe199ad97bc51c6e78d3f23 867 Pfam PF00535 Glycosyl transferase family 2 276 445 4.6E-34 T 29-03-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AM354_RS13430 a8d88d53dbe199ad97bc51c6e78d3f23 867 Pfam PF07238 PilZ domain 692 788 7.8E-11 T 29-03-2018 IPR009875 PilZ domain GO:0035438 AM354_RS13430 a8d88d53dbe199ad97bc51c6e78d3f23 867 Gene3D G3DSA:3.90.550.10 271 508 1.4E-49 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS09890 d20327269c7238594134ea8bc951238d 229 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 191 204 1.5E-7 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS09890 d20327269c7238594134ea8bc951238d 229 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 114 127 1.5E-7 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS09890 d20327269c7238594134ea8bc951238d 229 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 2 13 1.5E-7 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS09890 d20327269c7238594134ea8bc951238d 229 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 164 184 1.5E-7 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS09890 d20327269c7238594134ea8bc951238d 229 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 116 196 1.2E-6 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS09890 d20327269c7238594134ea8bc951238d 229 Hamap MF_01681 Enolase-phosphatase E1 [mtnC]. 1 222 42.284 T 29-03-2018 IPR023943 Enolase-phosphatase E1 GO:0000287|GO:0019509|GO:0043874 KEGG: 00270+3.1.3.77|Reactome: R-HSA-1237112 AM354_RS09890 d20327269c7238594134ea8bc951238d 229 Pfam PF00702 haloacid dehalogenase-like hydrolase 2 196 7.3E-6 T 29-03-2018 AM354_RS09890 d20327269c7238594134ea8bc951238d 229 SUPERFAMILY SSF56784 1 219 1.15E-60 T 29-03-2018 IPR023214 HAD-like domain AM354_RS09890 d20327269c7238594134ea8bc951238d 229 Gene3D G3DSA:3.40.50.1000 2 223 4.3E-16 T 29-03-2018 IPR023214 HAD-like domain AM354_RS09890 d20327269c7238594134ea8bc951238d 229 TIGRFAM TIGR01691 enolase-ppase: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 2 221 9.9E-89 T 29-03-2018 IPR023943 Enolase-phosphatase E1 GO:0000287|GO:0019509|GO:0043874 KEGG: 00270+3.1.3.77|Reactome: R-HSA-1237112 AM354_RS14650 7e89a166df4f020796689b5cd7c75543 108 Gene3D G3DSA:3.30.2390.10 5 65 5.7E-8 T 29-03-2018 IPR035069 TTHA1013/TTHA0281-like AM354_RS14650 7e89a166df4f020796689b5cd7c75543 108 SUPERFAMILY SSF143100 6 67 1.92E-8 T 29-03-2018 IPR035069 TTHA1013/TTHA0281-like AM354_RS14650 7e89a166df4f020796689b5cd7c75543 108 Gene3D G3DSA:1.10.1220.10 66 108 1.1E-8 T 29-03-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AM354_RS14650 7e89a166df4f020796689b5cd7c75543 108 Pfam PF05534 HicB family 58 102 8.4E-13 T 29-03-2018 IPR008651 Uncharacterised protein family HicB AM354_RS14650 7e89a166df4f020796689b5cd7c75543 108 SUPERFAMILY SSF47598 72 107 8.15E-5 T 29-03-2018 IPR010985 Ribbon-helix-helix GO:0006355 AM354_RS03095 75e06a160a297e8f24ba6e08d96e8991 135 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 3 123 4.2E-26 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AM354_RS03095 75e06a160a297e8f24ba6e08d96e8991 135 ProSitePatterns PS00934 Glyoxalase I signature 1. 5 26 - T 29-03-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 AM354_RS03095 75e06a160a297e8f24ba6e08d96e8991 135 Gene3D G3DSA:3.10.180.10 1 135 1.3E-37 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS03095 75e06a160a297e8f24ba6e08d96e8991 135 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 2 134 3.1E-67 T 29-03-2018 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 AM354_RS03095 75e06a160a297e8f24ba6e08d96e8991 135 SUPERFAMILY SSF54593 1 128 1.21E-35 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS23135 b9ccb61b89b2f02eba7b4748544d167a 598 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 103 158 2.0E-25 T 29-03-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23135 b9ccb61b89b2f02eba7b4748544d167a 598 Gene3D G3DSA:1.10.645.10 408 594 1.5E-30 T 29-03-2018 IPR029014 NiFe hydrogenase-like Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23135 b9ccb61b89b2f02eba7b4748544d167a 598 Gene3D G3DSA:1.10.645.10 209 407 3.4E-47 T 29-03-2018 IPR029014 NiFe hydrogenase-like Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23135 b9ccb61b89b2f02eba7b4748544d167a 598 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 209 598 42.075 T 29-03-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23135 b9ccb61b89b2f02eba7b4748544d167a 598 Hamap MF_01359 NADH-quinone oxidoreductase subunit C/D [nuoC]. 14 598 72.779 T 29-03-2018 IPR023062 NADH dehydrogenase, subunit CD GO:0030964|GO:0050136|GO:0055114 KEGG: 00190+1.6.5.11 AM354_RS23135 b9ccb61b89b2f02eba7b4748544d167a 598 SUPERFAMILY SSF143243 23 227 1.83E-60 T 29-03-2018 AM354_RS23135 b9ccb61b89b2f02eba7b4748544d167a 598 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 213 598 1.7E-175 T 29-03-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23135 b9ccb61b89b2f02eba7b4748544d167a 598 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 250 261 - T 29-03-2018 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23135 b9ccb61b89b2f02eba7b4748544d167a 598 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 47 174 1.0E-45 T 29-03-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23135 b9ccb61b89b2f02eba7b4748544d167a 598 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 23 183 25.474 T 29-03-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23135 b9ccb61b89b2f02eba7b4748544d167a 598 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 327 598 2.0E-102 T 29-03-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23135 b9ccb61b89b2f02eba7b4748544d167a 598 SUPERFAMILY SSF56762 223 598 2.62E-119 T 29-03-2018 IPR029014 NiFe hydrogenase-like Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23135 b9ccb61b89b2f02eba7b4748544d167a 598 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 48 175 1.3E-42 T 29-03-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS08130 d5632497f2c7a2704c767423f45168d5 898 Gene3D G3DSA:3.40.50.300 22 148 4.6E-23 T 29-03-2018 AM354_RS08130 d5632497f2c7a2704c767423f45168d5 898 Pfam PF00512 His Kinase A (phospho-acceptor) domain 667 733 7.7E-11 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS08130 d5632497f2c7a2704c767423f45168d5 898 Gene3D G3DSA:3.30.565.10 728 887 6.4E-37 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS08130 d5632497f2c7a2704c767423f45168d5 898 SMART SM00388 666 733 2.1E-13 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS08130 d5632497f2c7a2704c767423f45168d5 898 Gene3D G3DSA:1.20.120.620 403 501 5.7E-28 T 29-03-2018 AM354_RS08130 d5632497f2c7a2704c767423f45168d5 898 Gene3D G3DSA:3.30.450.40 502 656 4.8E-6 T 29-03-2018 IPR029016 GAF domain-like AM354_RS08130 d5632497f2c7a2704c767423f45168d5 898 SUPERFAMILY SSF52402 253 363 1.59E-8 T 29-03-2018 AM354_RS08130 d5632497f2c7a2704c767423f45168d5 898 PRINTS PR00344 Bacterial sensor protein C-terminal signature 814 828 3.6E-12 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS08130 d5632497f2c7a2704c767423f45168d5 898 PRINTS PR00344 Bacterial sensor protein C-terminal signature 832 842 3.6E-12 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS08130 d5632497f2c7a2704c767423f45168d5 898 PRINTS PR00344 Bacterial sensor protein C-terminal signature 871 884 3.6E-12 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS08130 d5632497f2c7a2704c767423f45168d5 898 PRINTS PR00344 Bacterial sensor protein C-terminal signature 847 865 3.6E-12 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS08130 d5632497f2c7a2704c767423f45168d5 898 SUPERFAMILY SSF55781 511 659 8.34E-6 T 29-03-2018 IPR029016 GAF domain-like AM354_RS08130 d5632497f2c7a2704c767423f45168d5 898 SMART SM00387 777 887 1.5E-34 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS08130 d5632497f2c7a2704c767423f45168d5 898 Pfam PF13492 GAF domain 532 647 1.0E-11 T 29-03-2018 IPR003018 GAF domain GO:0005515 AM354_RS08130 d5632497f2c7a2704c767423f45168d5 898 SUPERFAMILY SSF47384 662 734 4.9E-14 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS08130 d5632497f2c7a2704c767423f45168d5 898 Pfam PF13493 Domain of unknown function (DUF4118) 405 509 1.7E-30 T 29-03-2018 IPR025201 Sensor protein KdpD, transmembrane domain AM354_RS08130 d5632497f2c7a2704c767423f45168d5 898 Gene3D G3DSA:3.40.50.620 228 373 3.5E-14 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS08130 d5632497f2c7a2704c767423f45168d5 898 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 779 887 2.1E-23 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS08130 d5632497f2c7a2704c767423f45168d5 898 Gene3D G3DSA:1.10.287.130 657 727 1.7E-11 T 29-03-2018 AM354_RS08130 d5632497f2c7a2704c767423f45168d5 898 Pfam PF02702 Osmosensitive K+ channel His kinase sensor domain 23 231 3.2E-99 T 29-03-2018 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal GO:0000155|GO:0000160|GO:0004673|GO:0016020 AM354_RS08130 d5632497f2c7a2704c767423f45168d5 898 SUPERFAMILY SSF55874 722 889 2.36E-42 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS01215 78cf7a597a58f48eaada300721fb032c 376 Pfam PF07690 Major Facilitator Superfamily 222 368 1.1E-13 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS01215 78cf7a597a58f48eaada300721fb032c 376 Gene3D G3DSA:1.20.1250.20 1 190 2.2E-13 T 29-03-2018 AM354_RS01215 78cf7a597a58f48eaada300721fb032c 376 SUPERFAMILY SSF103473 11 367 1.31E-39 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS01215 78cf7a597a58f48eaada300721fb032c 376 Gene3D G3DSA:1.20.1250.20 191 369 6.3E-22 T 29-03-2018 AM354_RS17615 245d74d853a64cdd9325224631e9262c 232 SUPERFAMILY SSF52218 20 219 6.11E-64 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS17615 245d74d853a64cdd9325224631e9262c 232 Gene3D G3DSA:3.40.50.360 15 217 4.8E-49 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS17615 245d74d853a64cdd9325224631e9262c 232 TIGRFAM TIGR02690 resist_ArsH: arsenical resistance protein ArsH 12 218 1.6E-114 T 29-03-2018 IPR014063 Arsenate resistance ArsH AM354_RS17615 245d74d853a64cdd9325224631e9262c 232 Pfam PF03358 NADPH-dependent FMN reductase 26 171 2.0E-27 T 29-03-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AM354_RS16645 96e07938ae9191e7bd1261467b23a58b 293 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 3 286 1.5E-119 T 29-03-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 AM354_RS16645 96e07938ae9191e7bd1261467b23a58b 293 Gene3D G3DSA:3.40.50.150 99 292 1.8E-34 T 29-03-2018 AM354_RS16645 96e07938ae9191e7bd1261467b23a58b 293 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 3 293 5.6E-103 T 29-03-2018 AM354_RS16645 96e07938ae9191e7bd1261467b23a58b 293 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 3 292 33.326 T 29-03-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 AM354_RS16645 96e07938ae9191e7bd1261467b23a58b 293 SUPERFAMILY SSF53335 43 291 7.47E-45 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS16645 96e07938ae9191e7bd1261467b23a58b 293 PIRSF PIRSF000401 1 293 1.2E-93 T 29-03-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 AM354_RS23220 f280fce61d373191c492bbb73868d113 103 Gene3D G3DSA:1.20.5.1230 1 83 0.0011 T 29-03-2018 AM354_RS23220 f280fce61d373191c492bbb73868d113 103 Pfam PF05957 Bacterial protein of unknown function (DUF883) 11 103 3.4E-30 T 29-03-2018 IPR010279 Protein of unknown function DUF883, ElaB AM354_RS12355 2d7240844d0372fd49f9c9cd92306003 379 SUPERFAMILY SSF46548 139 256 7.85E-20 T 29-03-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AM354_RS12355 2d7240844d0372fd49f9c9cd92306003 379 Gene3D G3DSA:3.30.70.20 201 373 2.9E-11 T 29-03-2018 AM354_RS12355 2d7240844d0372fd49f9c9cd92306003 379 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 193 204 - T 29-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM354_RS12355 2d7240844d0372fd49f9c9cd92306003 379 Gene3D G3DSA:3.30.70.20 126 200 2.4E-4 T 29-03-2018 AM354_RS12355 2d7240844d0372fd49f9c9cd92306003 379 Pfam PF08331 Domain of unknown function (DUF1730) 62 140 1.7E-23 T 29-03-2018 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700 AM354_RS12355 2d7240844d0372fd49f9c9cd92306003 379 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 14 348 9.3E-154 T 29-03-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 AM354_RS12355 2d7240844d0372fd49f9c9cd92306003 379 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 7 315 51.898 T 29-03-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 AM354_RS12355 2d7240844d0372fd49f9c9cd92306003 379 Pfam PF13484 4Fe-4S double cluster binding domain 192 256 7.5E-19 T 29-03-2018 AM354_RS02955 4a49a32361b35db28e85b34eccc65cf4 284 SUPERFAMILY SSF56112 24 260 1.6E-33 T 29-03-2018 IPR011009 Protein kinase-like domain AM354_RS02955 4a49a32361b35db28e85b34eccc65cf4 284 Pfam PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase 11 248 2.3E-83 T 29-03-2018 IPR006748 Aminoglycoside/hydroxyurea antibiotic resistance kinase GO:0006468|GO:0016773|GO:0019748 AM354_RS02955 4a49a32361b35db28e85b34eccc65cf4 284 Gene3D G3DSA:3.90.1200.10 86 267 1.6E-10 T 29-03-2018 AM354_RS07875 e5788b30e142ea4411a432b54d93705f 350 Gene3D G3DSA:3.20.20.70 8 350 9.3E-133 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS07875 e5788b30e142ea4411a432b54d93705f 350 Pfam PF00793 DAHP synthetase I family 39 338 6.6E-107 T 29-03-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AM354_RS07875 e5788b30e142ea4411a432b54d93705f 350 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 6 349 4.2E-175 T 29-03-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 AM354_RS07875 e5788b30e142ea4411a432b54d93705f 350 SUPERFAMILY SSF51569 7 348 3.56E-137 T 29-03-2018 AM354_RS07875 e5788b30e142ea4411a432b54d93705f 350 PIRSF PIRSF001361 1 350 4.4E-163 T 29-03-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 AM354_RS10805 343b60faf38e6dd77a3d6069862b3ebd 1074 Gene3D G3DSA:1.10.1030.10 404 538 6.4E-52 T 29-03-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM354_RS10805 343b60faf38e6dd77a3d6069862b3ebd 1074 Gene3D G3DSA:3.40.50.1380 937 1073 6.0E-29 T 29-03-2018 IPR011607 Methylglyoxal synthase-like domain AM354_RS10805 343b60faf38e6dd77a3d6069862b3ebd 1074 SUPERFAMILY SSF48108 396 554 2.48E-52 T 29-03-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM354_RS10805 343b60faf38e6dd77a3d6069862b3ebd 1074 Gene3D G3DSA:3.30.1490.20 656 745 7.6E-23 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AM354_RS10805 343b60faf38e6dd77a3d6069862b3ebd 1074 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1063 13.195 T 29-03-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM354_RS10805 343b60faf38e6dd77a3d6069862b3ebd 1074 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 164 178 - T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AM354_RS10805 343b60faf38e6dd77a3d6069862b3ebd 1074 SUPERFAMILY SSF56059 674 934 4.6E-105 T 29-03-2018 AM354_RS10805 343b60faf38e6dd77a3d6069862b3ebd 1074 Pfam PF02142 MGS-like domain 957 1041 1.1E-17 T 29-03-2018 IPR011607 Methylglyoxal synthase-like domain AM354_RS10805 343b60faf38e6dd77a3d6069862b3ebd 1074 Gene3D G3DSA:3.30.470.20 119 403 7.0E-66 T 29-03-2018 AM354_RS10805 343b60faf38e6dd77a3d6069862b3ebd 1074 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 710 724 - T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AM354_RS10805 343b60faf38e6dd77a3d6069862b3ebd 1074 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 427 547 1.2E-39 T 29-03-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM354_RS10805 343b60faf38e6dd77a3d6069862b3ebd 1074 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 297 304 - T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AM354_RS10805 343b60faf38e6dd77a3d6069862b3ebd 1074 SUPERFAMILY SSF52440 1 127 5.61E-50 T 29-03-2018 IPR016185 Pre-ATP-grasp domain AM354_RS10805 343b60faf38e6dd77a3d6069862b3ebd 1074 SUPERFAMILY SSF52440 557 676 6.33E-50 T 29-03-2018 IPR016185 Pre-ATP-grasp domain AM354_RS10805 343b60faf38e6dd77a3d6069862b3ebd 1074 Gene3D G3DSA:3.40.50.20 539 655 2.0E-63 T 29-03-2018 AM354_RS10805 343b60faf38e6dd77a3d6069862b3ebd 1074 SUPERFAMILY SSF56059 128 401 3.18E-109 T 29-03-2018 AM354_RS10805 343b60faf38e6dd77a3d6069862b3ebd 1074 SMART SM01096 424 547 1.4E-74 T 29-03-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM354_RS10805 343b60faf38e6dd77a3d6069862b3ebd 1074 Gene3D G3DSA:3.30.470.20 746 936 4.2E-43 T 29-03-2018 AM354_RS10805 343b60faf38e6dd77a3d6069862b3ebd 1074 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 839 846 - T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AM354_RS10805 343b60faf38e6dd77a3d6069862b3ebd 1074 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 334 1.1E-76 T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AM354_RS10805 343b60faf38e6dd77a3d6069862b3ebd 1074 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 674 876 6.9E-38 T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AM354_RS10805 343b60faf38e6dd77a3d6069862b3ebd 1074 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1068 13.364 T 29-03-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM354_RS10805 343b60faf38e6dd77a3d6069862b3ebd 1074 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1053 0.0 T 29-03-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM354_RS10805 343b60faf38e6dd77a3d6069862b3ebd 1074 SMART SM00851 956 1042 4.9E-30 T 29-03-2018 IPR011607 Methylglyoxal synthase-like domain AM354_RS10805 343b60faf38e6dd77a3d6069862b3ebd 1074 Gene3D G3DSA:3.40.50.20 4 109 2.9E-40 T 29-03-2018 AM354_RS10805 343b60faf38e6dd77a3d6069862b3ebd 1074 SUPERFAMILY SSF52335 938 1071 1.7E-34 T 29-03-2018 IPR011607 Methylglyoxal synthase-like domain AM354_RS10805 343b60faf38e6dd77a3d6069862b3ebd 1074 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 380 398 6.4E-64 T 29-03-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM354_RS10805 343b60faf38e6dd77a3d6069862b3ebd 1074 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 297 326 6.4E-64 T 29-03-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM354_RS10805 343b60faf38e6dd77a3d6069862b3ebd 1074 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 6.4E-64 T 29-03-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM354_RS10805 343b60faf38e6dd77a3d6069862b3ebd 1074 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 6.4E-64 T 29-03-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM354_RS10805 343b60faf38e6dd77a3d6069862b3ebd 1074 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 6.4E-64 T 29-03-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM354_RS10805 343b60faf38e6dd77a3d6069862b3ebd 1074 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 6.4E-64 T 29-03-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM354_RS10805 343b60faf38e6dd77a3d6069862b3ebd 1074 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 6.4E-64 T 29-03-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM354_RS23595 9c4555d99c7c55a14c70046f291c047d 396 PIRSF PIRSF016049 1 391 2.8E-180 T 29-03-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 AM354_RS23595 9c4555d99c7c55a14c70046f291c047d 396 SUPERFAMILY SSF51658 1 383 8.84E-78 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM354_RS23595 9c4555d99c7c55a14c70046f291c047d 396 Hamap MF_00106 Mannonate dehydratase [uxuA]. 1 396 221.503 T 29-03-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 AM354_RS23595 9c4555d99c7c55a14c70046f291c047d 396 TIGRFAM TIGR00695 uxuA: mannonate dehydratase 1 392 5.7E-205 T 29-03-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 AM354_RS23595 9c4555d99c7c55a14c70046f291c047d 396 Gene3D G3DSA:3.20.20.150 1 391 2.3E-106 T 29-03-2018 AM354_RS23595 9c4555d99c7c55a14c70046f291c047d 396 Pfam PF03786 D-mannonate dehydratase (UxuA) 1 388 8.0E-153 T 29-03-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 AM354_RS12165 fda5d2c28d1d770e9b15578dc6beb101 115 Gene3D G3DSA:3.10.490.10 1 115 1.3E-25 T 29-03-2018 AM354_RS12165 fda5d2c28d1d770e9b15578dc6beb101 115 SUPERFAMILY SSF110857 1 114 3.92E-33 T 29-03-2018 IPR013024 Gamma-glutamyl cyclotransferase-like AM354_RS12165 fda5d2c28d1d770e9b15578dc6beb101 115 Pfam PF06094 Gamma-glutamyl cyclotransferase, AIG2-like 3 109 2.9E-22 T 29-03-2018 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like AM354_RS09895 acb82120067f7cf399488e8d5584d9cc 204 SMART SM01007 8 196 2.8E-50 T 29-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM354_RS09895 acb82120067f7cf399488e8d5584d9cc 204 SUPERFAMILY SSF53639 3 200 3.92E-46 T 29-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM354_RS09895 acb82120067f7cf399488e8d5584d9cc 204 Gene3D G3DSA:3.40.225.10 2 204 7.1E-45 T 29-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM354_RS09895 acb82120067f7cf399488e8d5584d9cc 204 TIGRFAM TIGR03328 salvage_mtnB: methylthioribulose-1-phosphate dehydratase 11 199 8.1E-71 T 29-03-2018 IPR017714 Methylthioribulose-1-phosphate dehydratase GO:0005737|GO:0019509|GO:0046872 KEGG: 00270+4.2.1.109|KEGG: 00400+4.2.1.10|MetaCyc: PWY-4361|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|Reactome: R-HSA-1237112 AM354_RS09895 acb82120067f7cf399488e8d5584d9cc 204 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 10 195 1.1E-41 T 29-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM354_RS09895 acb82120067f7cf399488e8d5584d9cc 204 Hamap MF_01677 Methylthioribulose-1-phosphate dehydratase [mtnB]. 1 204 120.817 T 29-03-2018 IPR017714 Methylthioribulose-1-phosphate dehydratase GO:0005737|GO:0019509|GO:0046872 KEGG: 00270+4.2.1.109|KEGG: 00400+4.2.1.10|MetaCyc: PWY-4361|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|Reactome: R-HSA-1237112 AM354_RS23710 336b77a6437f86660f863d9016a2c855 503 Gene3D G3DSA:3.40.50.300 6 241 4.2E-51 T 29-03-2018 AM354_RS23710 336b77a6437f86660f863d9016a2c855 503 Pfam PF00005 ABC transporter 24 175 3.4E-25 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS23710 336b77a6437f86660f863d9016a2c855 503 Pfam PF00005 ABC transporter 275 429 5.3E-17 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS23710 336b77a6437f86660f863d9016a2c855 503 SUPERFAMILY SSF52540 9 232 4.85E-54 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS23710 336b77a6437f86660f863d9016a2c855 503 SUPERFAMILY SSF52540 261 490 1.38E-38 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS23710 336b77a6437f86660f863d9016a2c855 503 Gene3D G3DSA:3.40.50.300 248 317 4.3E-7 T 29-03-2018 AM354_RS23710 336b77a6437f86660f863d9016a2c855 503 ProSitePatterns PS00211 ABC transporters family signature. 402 416 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS23710 336b77a6437f86660f863d9016a2c855 503 SMART SM00382 284 480 6.2E-4 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS23710 336b77a6437f86660f863d9016a2c855 503 SMART SM00382 33 231 3.2E-9 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS23710 336b77a6437f86660f863d9016a2c855 503 Gene3D G3DSA:3.40.50.300 333 496 1.4E-25 T 29-03-2018 AM354_RS10455 31ee3bde835e1650b157da537f7dfe1c 479 PRINTS PR00762 Chloride channel signature 183 202 7.0E-29 T 29-03-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AM354_RS10455 31ee3bde835e1650b157da537f7dfe1c 479 PRINTS PR00762 Chloride channel signature 405 424 7.0E-29 T 29-03-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AM354_RS10455 31ee3bde835e1650b157da537f7dfe1c 479 PRINTS PR00762 Chloride channel signature 387 403 7.0E-29 T 29-03-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AM354_RS10455 31ee3bde835e1650b157da537f7dfe1c 479 PRINTS PR00762 Chloride channel signature 102 119 7.0E-29 T 29-03-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AM354_RS10455 31ee3bde835e1650b157da537f7dfe1c 479 PRINTS PR00762 Chloride channel signature 352 372 7.0E-29 T 29-03-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AM354_RS10455 31ee3bde835e1650b157da537f7dfe1c 479 SUPERFAMILY SSF81340 23 453 5.62E-110 T 29-03-2018 IPR014743 Chloride channel, core GO:0005216|GO:0055085 Reactome: R-HSA-2672351 AM354_RS10455 31ee3bde835e1650b157da537f7dfe1c 479 Pfam PF00654 Voltage gated chloride channel 90 437 1.3E-89 T 29-03-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AM354_RS10455 31ee3bde835e1650b157da537f7dfe1c 479 Hamap MF_01128 H(+)/Cl(-) exchange transporter ClcA [clcA]. 3 469 48.629 T 29-03-2018 IPR023861 Chloride channel, ClcA GO:0005887|GO:0006821|GO:0015108 AM354_RS10455 31ee3bde835e1650b157da537f7dfe1c 479 Gene3D G3DSA:1.10.3080.10 16 461 4.1E-105 T 29-03-2018 IPR014743 Chloride channel, core GO:0005216|GO:0055085 Reactome: R-HSA-2672351 AM354_RS26200 f1154eef138da029c19309a9f15b005d 154 ProSitePatterns PS01123 Thermonuclease family signature 1. 31 56 - T 29-03-2018 IPR002071 Thermonuclease active site GO:0003676|GO:0004518 Reactome: R-HSA-6802952 AM354_RS26200 f1154eef138da029c19309a9f15b005d 154 SUPERFAMILY SSF50199 16 148 6.8E-37 T 29-03-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold AM354_RS26200 f1154eef138da029c19309a9f15b005d 154 SMART SM00318 20 141 2.9E-32 T 29-03-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold AM354_RS26200 f1154eef138da029c19309a9f15b005d 154 Pfam PF00565 Staphylococcal nuclease homologue 46 141 8.0E-22 T 29-03-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold AM354_RS26200 f1154eef138da029c19309a9f15b005d 154 Gene3D G3DSA:2.40.50.90 13 145 2.1E-32 T 29-03-2018 IPR035437 Staphylococcal nuclease (SNase-like), OB-fold/extended TUDOR domain AM354_RS07120 d84ef4f3eeebabd6b77a62a390cfda6e 87 Gene3D G3DSA:1.10.1220.10 5 45 5.5E-9 T 29-03-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AM354_RS07120 d84ef4f3eeebabd6b77a62a390cfda6e 87 SUPERFAMILY SSF47598 4 44 3.22E-8 T 29-03-2018 IPR010985 Ribbon-helix-helix GO:0006355 AM354_RS07120 d84ef4f3eeebabd6b77a62a390cfda6e 87 TIGRFAM TIGR02606 antidote_CC2985: putative addiction module antidote protein, CC2985 family 5 74 2.4E-21 T 29-03-2018 IPR022789 Antitoxin ParD AM354_RS07120 d84ef4f3eeebabd6b77a62a390cfda6e 87 Pfam PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH 1 80 1.3E-16 T 29-03-2018 IPR022789 Antitoxin ParD AM354_RS25645 51f82eb4add7da8324f9e89c13e640af 594 Gene3D G3DSA:3.30.565.10 420 587 2.8E-23 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS25645 51f82eb4add7da8324f9e89c13e640af 594 SMART SM00387 497 590 3.4E-9 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS25645 51f82eb4add7da8324f9e89c13e640af 594 Gene3D G3DSA:3.30.450.40 214 389 5.5E-6 T 29-03-2018 IPR029016 GAF domain-like AM354_RS25645 51f82eb4add7da8324f9e89c13e640af 594 PIRSF PIRSF003167 1 594 6.9E-189 T 29-03-2018 IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing GO:0000155|GO:0000160|GO:0004673|GO:0016021 AM354_RS25645 51f82eb4add7da8324f9e89c13e640af 594 SUPERFAMILY SSF55874 464 586 3.27E-17 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS25645 51f82eb4add7da8324f9e89c13e640af 594 SUPERFAMILY SSF158472 175 225 2.88E-6 T 29-03-2018 AM354_RS25645 51f82eb4add7da8324f9e89c13e640af 594 SMART SM00304 175 228 4.5E-12 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM354_RS25645 51f82eb4add7da8324f9e89c13e640af 594 Pfam PF07730 Histidine kinase 393 456 7.5E-17 T 29-03-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AM354_RS25645 51f82eb4add7da8324f9e89c13e640af 594 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 34 124 9.9E-10 T 29-03-2018 IPR029095 NarX-like, N-terminal AM354_RS25645 51f82eb4add7da8324f9e89c13e640af 594 Pfam PF00672 HAMP domain 175 224 6.9E-9 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM354_RS25645 51f82eb4add7da8324f9e89c13e640af 594 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 500 586 4.1E-7 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS12440 83b49286587674814cf63efbcf9095ed 188 Pfam PF09285 Elongation factor P, C-terminal 131 186 4.2E-25 T 29-03-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 AM354_RS12440 83b49286587674814cf63efbcf9095ed 188 Gene3D G3DSA:2.30.30.30 4 63 3.0E-24 T 29-03-2018 IPR014722 Ribosomal protein L2 domain 2 AM354_RS12440 83b49286587674814cf63efbcf9095ed 188 Gene3D G3DSA:2.40.50.140 67 126 9.4E-26 T 29-03-2018 AM354_RS12440 83b49286587674814cf63efbcf9095ed 188 SMART SM00841 131 186 4.9E-31 T 29-03-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 AM354_RS12440 83b49286587674814cf63efbcf9095ed 188 Gene3D G3DSA:2.40.50.140 127 186 1.5E-26 T 29-03-2018 AM354_RS12440 83b49286587674814cf63efbcf9095ed 188 ProSitePatterns PS01275 Elongation factor P signature. 152 171 - T 29-03-2018 IPR013852 Translation elongation factor P/YeiP, conserved site AM354_RS12440 83b49286587674814cf63efbcf9095ed 188 SMART SM01185 69 123 1.2E-26 T 29-03-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 AM354_RS12440 83b49286587674814cf63efbcf9095ed 188 TIGRFAM TIGR00038 efp: translation elongation factor P 4 187 9.7E-76 T 29-03-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 AM354_RS12440 83b49286587674814cf63efbcf9095ed 188 PIRSF PIRSF005901 2 188 9.8E-66 T 29-03-2018 IPR020599 Translation elongation factor P/YeiP AM354_RS12440 83b49286587674814cf63efbcf9095ed 188 Hamap MF_00141 Elongation factor P [efp]. 3 187 48.948 T 29-03-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 AM354_RS12440 83b49286587674814cf63efbcf9095ed 188 Pfam PF01132 Elongation factor P (EF-P) OB domain 71 123 6.7E-23 T 29-03-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 AM354_RS12440 83b49286587674814cf63efbcf9095ed 188 SUPERFAMILY SSF50249 130 187 5.82E-18 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS12440 83b49286587674814cf63efbcf9095ed 188 SUPERFAMILY SSF50104 4 63 8.42E-18 T 29-03-2018 IPR008991 Translation protein SH3-like domain AM354_RS12440 83b49286587674814cf63efbcf9095ed 188 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 5 61 7.1E-24 T 29-03-2018 IPR013185 Translation elongation factor, KOW-like AM354_RS12440 83b49286587674814cf63efbcf9095ed 188 SUPERFAMILY SSF50249 69 128 3.08E-18 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS11035 f8d00bbe58b53d33b09e536f44941a94 461 Gene3D G3DSA:3.30.230.10 288 458 2.3E-30 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AM354_RS11035 f8d00bbe58b53d33b09e536f44941a94 461 Pfam PF13481 AAA domain 88 225 1.5E-13 T 29-03-2018 AM354_RS11035 f8d00bbe58b53d33b09e536f44941a94 461 Pfam PF13541 Subunit ChlI of Mg-chelatase 348 433 3.8E-9 T 29-03-2018 AM354_RS11035 f8d00bbe58b53d33b09e536f44941a94 461 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 454 2.6E-235 T 29-03-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 AM354_RS11035 f8d00bbe58b53d33b09e536f44941a94 461 SMART SM00382 94 248 1.0E-8 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS11035 f8d00bbe58b53d33b09e536f44941a94 461 SUPERFAMILY SSF54211 258 272 1.25E-41 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM354_RS11035 f8d00bbe58b53d33b09e536f44941a94 461 SUPERFAMILY SSF54211 306 457 1.25E-41 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM354_RS11035 f8d00bbe58b53d33b09e536f44941a94 461 Gene3D G3DSA:3.40.50.300 76 286 1.0E-37 T 29-03-2018 AM354_RS11035 f8d00bbe58b53d33b09e536f44941a94 461 PRINTS PR01874 DNA repair protein radA signature 177 201 1.6E-93 T 29-03-2018 AM354_RS11035 f8d00bbe58b53d33b09e536f44941a94 461 PRINTS PR01874 DNA repair protein radA signature 216 244 1.6E-93 T 29-03-2018 AM354_RS11035 f8d00bbe58b53d33b09e536f44941a94 461 PRINTS PR01874 DNA repair protein radA signature 127 144 1.6E-93 T 29-03-2018 AM354_RS11035 f8d00bbe58b53d33b09e536f44941a94 461 PRINTS PR01874 DNA repair protein radA signature 325 348 1.6E-93 T 29-03-2018 AM354_RS11035 f8d00bbe58b53d33b09e536f44941a94 461 PRINTS PR01874 DNA repair protein radA signature 11 35 1.6E-93 T 29-03-2018 AM354_RS11035 f8d00bbe58b53d33b09e536f44941a94 461 PRINTS PR01874 DNA repair protein radA signature 86 114 1.6E-93 T 29-03-2018 AM354_RS11035 f8d00bbe58b53d33b09e536f44941a94 461 PRINTS PR01874 DNA repair protein radA signature 251 277 1.6E-93 T 29-03-2018 AM354_RS11035 f8d00bbe58b53d33b09e536f44941a94 461 SUPERFAMILY SSF52540 72 291 1.51E-47 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS11035 f8d00bbe58b53d33b09e536f44941a94 461 Hamap MF_01498 DNA repair protein RadA [radA]. 22 458 42.955 T 29-03-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 AM354_RS06445 620123dc12373475a9260d57149d72b6 330 Gene3D G3DSA:3.40.50.2300 25 135 5.1E-17 T 29-03-2018 AM354_RS06445 620123dc12373475a9260d57149d72b6 330 SUPERFAMILY SSF53822 24 329 5.69E-85 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS06445 620123dc12373475a9260d57149d72b6 330 Pfam PF13407 Periplasmic binding protein domain 27 298 2.2E-64 T 29-03-2018 IPR025997 Periplasmic binding protein AM354_RS06445 620123dc12373475a9260d57149d72b6 330 Gene3D G3DSA:3.40.50.2300 136 330 4.0E-41 T 29-03-2018 AM354_RS02890 9f097b09ff6f40045e5bacbef065f4d2 193 PIRSF PIRSF006102 1 193 5.3E-62 T 29-03-2018 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 AM354_RS02890 9f097b09ff6f40045e5bacbef065f4d2 193 TIGRFAM TIGR01943 rnfA: electron transport complex, RnfABCDGE type, A subunit 3 191 1.2E-90 T 29-03-2018 IPR011293 Electron transport complex, subunit RnfA/RsxA GO:0022900 AM354_RS02890 9f097b09ff6f40045e5bacbef065f4d2 193 Hamap MF_00459 Electron transport complex subunit RsxA [rsxA]. 2 191 26.666 T 29-03-2018 IPR011293 Electron transport complex, subunit RnfA/RsxA GO:0022900 AM354_RS02890 9f097b09ff6f40045e5bacbef065f4d2 193 Pfam PF02508 Rnf-Nqr subunit, membrane protein 5 190 2.2E-60 T 29-03-2018 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 AM354_RS19700 c83c4f55085d6362e9b3fbec79c1952b 250 Gene3D G3DSA:3.10.350.10 38 96 9.5E-16 T 29-03-2018 AM354_RS19700 c83c4f55085d6362e9b3fbec79c1952b 250 Pfam PF01476 LysM domain 49 91 3.5E-11 T 29-03-2018 IPR018392 LysM domain AM354_RS19700 c83c4f55085d6362e9b3fbec79c1952b 250 SUPERFAMILY SSF51261 48 241 5.23E-49 T 29-03-2018 IPR011055 Duplicated hybrid motif AM354_RS19700 c83c4f55085d6362e9b3fbec79c1952b 250 Pfam PF01551 Peptidase family M23 144 237 1.7E-30 T 29-03-2018 IPR016047 Peptidase M23 AM354_RS19700 c83c4f55085d6362e9b3fbec79c1952b 250 Gene3D G3DSA:2.70.70.10 97 244 4.5E-39 T 29-03-2018 AM354_RS19700 c83c4f55085d6362e9b3fbec79c1952b 250 SMART SM00257 48 92 2.9E-11 T 29-03-2018 IPR018392 LysM domain AM354_RS25600 bf78b6707320d7f05525e7d2e3b21d4d 522 SUPERFAMILY SSF53850 22 517 2.71E-97 T 29-03-2018 AM354_RS25600 bf78b6707320d7f05525e7d2e3b21d4d 522 Gene3D G3DSA:3.90.76.10 37 191 3.6E-21 T 29-03-2018 AM354_RS25600 bf78b6707320d7f05525e7d2e3b21d4d 522 Gene3D G3DSA:3.40.190.10 193 289 1.8E-15 T 29-03-2018 AM354_RS25600 bf78b6707320d7f05525e7d2e3b21d4d 522 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 72 437 6.5E-64 T 29-03-2018 IPR000914 Solute-binding protein family 5 domain AM354_RS25600 bf78b6707320d7f05525e7d2e3b21d4d 522 PIRSF PIRSF002741 2 518 1.2E-59 T 29-03-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AM354_RS25600 bf78b6707320d7f05525e7d2e3b21d4d 522 Gene3D G3DSA:3.10.105.10 290 488 8.3E-36 T 29-03-2018 AM354_RS22635 1d4ae17a4cdb5da9066e0676985649e1 146 ProDom PD460230 MEMBRANE STORAGE INNER HAEMIN SYSTEM HMSS PGA BIOFILM PGAD TRANSMEMBRANE 1 110 2.0E-12 T 29-03-2018 AM354_RS22635 1d4ae17a4cdb5da9066e0676985649e1 146 TIGRFAM TIGR03940 PGA_PgaD: poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD 11 128 3.2E-16 T 29-03-2018 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD GO:0042710 AM354_RS22635 1d4ae17a4cdb5da9066e0676985649e1 146 Pfam PF13994 PgaD-like protein 5 125 9.1E-21 T 29-03-2018 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD GO:0042710 AM354_RS23540 91e3f515cacc0f16451cc67cace9315e 536 SUPERFAMILY SSF52540 5 256 1.13E-63 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS23540 91e3f515cacc0f16451cc67cace9315e 536 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 259 3.8E-4 T 29-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AM354_RS23540 91e3f515cacc0f16451cc67cace9315e 536 SUPERFAMILY SSF52540 282 531 1.09E-65 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS23540 91e3f515cacc0f16451cc67cace9315e 536 Gene3D G3DSA:3.40.50.300 279 536 8.8E-71 T 29-03-2018 AM354_RS23540 91e3f515cacc0f16451cc67cace9315e 536 Gene3D G3DSA:3.40.50.300 2 266 6.7E-67 T 29-03-2018 AM354_RS23540 91e3f515cacc0f16451cc67cace9315e 536 ProSitePatterns PS00211 ABC transporters family signature. 432 446 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS23540 91e3f515cacc0f16451cc67cace9315e 536 Pfam PF00005 ABC transporter 309 460 5.4E-30 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS23540 91e3f515cacc0f16451cc67cace9315e 536 Pfam PF00005 ABC transporter 26 184 6.7E-27 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS23540 91e3f515cacc0f16451cc67cace9315e 536 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS23540 91e3f515cacc0f16451cc67cace9315e 536 SMART SM00382 34 234 1.4E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS23540 91e3f515cacc0f16451cc67cace9315e 536 SMART SM00382 318 508 8.2E-18 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS04815 dfd880b8851c90b3691800a020ea3bf4 413 SUPERFAMILY SSF53901 4 252 3.76E-77 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS04815 dfd880b8851c90b3691800a020ea3bf4 413 Gene3D G3DSA:3.40.47.10 263 413 1.2E-53 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS04815 dfd880b8851c90b3691800a020ea3bf4 413 SUPERFAMILY SSF53901 215 412 3.84E-74 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS04815 dfd880b8851c90b3691800a020ea3bf4 413 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 4 247 6.6E-62 T 29-03-2018 IPR014030 Beta-ketoacyl synthase, N-terminal AM354_RS04815 dfd880b8851c90b3691800a020ea3bf4 413 PIRSF PIRSF000447 1 413 6.0E-202 T 29-03-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 AM354_RS04815 dfd880b8851c90b3691800a020ea3bf4 413 Gene3D G3DSA:3.40.47.10 6 260 6.2E-81 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS04815 dfd880b8851c90b3691800a020ea3bf4 413 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 255 369 3.2E-41 T 29-03-2018 IPR014031 Beta-ketoacyl synthase, C-terminal AM354_RS04815 dfd880b8851c90b3691800a020ea3bf4 413 SMART SM00825 Beta-ketoacyl synthase 6 413 7.5E-16 T 29-03-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AM354_RS04815 dfd880b8851c90b3691800a020ea3bf4 413 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 155 171 - T 29-03-2018 IPR018201 Beta-ketoacyl synthase, active site AM354_RS04815 dfd880b8851c90b3691800a020ea3bf4 413 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 4 411 1.2E-195 T 29-03-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 AM354_RS25230 1a67f3084937eb1ae5eb8863501d558c 673 SMART SM00387 388 528 1.9E-26 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS25230 1a67f3084937eb1ae5eb8863501d558c 673 Gene3D G3DSA:2.30.30.40 614 659 3.7E-21 T 29-03-2018 AM354_RS25230 1a67f3084937eb1ae5eb8863501d558c 673 SMART SM01231 280 343 7.4E-22 T 29-03-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 AM354_RS25230 1a67f3084937eb1ae5eb8863501d558c 673 Gene3D G3DSA:3.30.565.10 346 536 3.8E-27 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS25230 1a67f3084937eb1ae5eb8863501d558c 673 Gene3D G3DSA:2.40.50.180 544 613 3.9E-12 T 29-03-2018 AM354_RS25230 1a67f3084937eb1ae5eb8863501d558c 673 Pfam PF01584 CheW-like domain 533 659 2.2E-26 T 29-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 AM354_RS25230 1a67f3084937eb1ae5eb8863501d558c 673 Gene3D G3DSA:1.10.287.560 280 344 4.4E-20 T 29-03-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 AM354_RS25230 1a67f3084937eb1ae5eb8863501d558c 673 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 391 527 7.2E-18 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS25230 1a67f3084937eb1ae5eb8863501d558c 673 SUPERFAMILY SSF47384 281 344 2.63E-15 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS25230 1a67f3084937eb1ae5eb8863501d558c 673 Pfam PF09078 CheY binding 162 224 4.4E-24 T 29-03-2018 IPR015162 CheY binding AM354_RS25230 1a67f3084937eb1ae5eb8863501d558c 673 SUPERFAMILY SSF55874 346 526 7.33E-35 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS25230 1a67f3084937eb1ae5eb8863501d558c 673 SUPERFAMILY SSF50341 527 659 2.09E-31 T 29-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 AM354_RS25230 1a67f3084937eb1ae5eb8863501d558c 673 Pfam PF01627 Hpt domain 8 104 2.3E-18 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM354_RS25230 1a67f3084937eb1ae5eb8863501d558c 673 SUPERFAMILY SSF47226 5 126 3.64E-31 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM354_RS25230 1a67f3084937eb1ae5eb8863501d558c 673 Gene3D G3DSA:1.20.120.160 1 146 3.7E-33 T 29-03-2018 AM354_RS25230 1a67f3084937eb1ae5eb8863501d558c 673 SMART SM00260 520 660 6.5E-43 T 29-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 AM354_RS25230 1a67f3084937eb1ae5eb8863501d558c 673 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 281 343 3.7E-17 T 29-03-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 AM354_RS25230 1a67f3084937eb1ae5eb8863501d558c 673 Gene3D G3DSA:3.30.70.400 160 225 2.0E-25 T 29-03-2018 IPR015162 CheY binding AM354_RS25230 1a67f3084937eb1ae5eb8863501d558c 673 PRINTS PR00344 Bacterial sensor protein C-terminal signature 488 506 4.5E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS25230 1a67f3084937eb1ae5eb8863501d558c 673 PRINTS PR00344 Bacterial sensor protein C-terminal signature 512 525 4.5E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS25230 1a67f3084937eb1ae5eb8863501d558c 673 PRINTS PR00344 Bacterial sensor protein C-terminal signature 433 447 4.5E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS25230 1a67f3084937eb1ae5eb8863501d558c 673 PRINTS PR00344 Bacterial sensor protein C-terminal signature 472 482 4.5E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS25230 1a67f3084937eb1ae5eb8863501d558c 673 SUPERFAMILY SSF55052 161 225 1.73E-19 T 29-03-2018 IPR015162 CheY binding AM354_RS25230 1a67f3084937eb1ae5eb8863501d558c 673 SMART SM00073 5 102 4.5E-28 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM354_RS06890 d7cf8041738531e410a3c74fa9aafcde 279 SMART SM00530 16 88 1.5E-6 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM354_RS06890 d7cf8041738531e410a3c74fa9aafcde 279 Pfam PF13560 Helix-turn-helix domain 12 91 4.9E-15 T 29-03-2018 AM354_RS06890 d7cf8041738531e410a3c74fa9aafcde 279 Gene3D G3DSA:1.10.260.40 4 100 5.6E-14 T 29-03-2018 AM354_RS06890 d7cf8041738531e410a3c74fa9aafcde 279 SUPERFAMILY SSF47413 36 84 6.57E-6 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS11260 2504c465c101e6a32fcd1f89d3ae4b90 484 SUPERFAMILY SSF53720 2 476 6.68E-166 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM354_RS11260 2504c465c101e6a32fcd1f89d3ae4b90 484 Gene3D G3DSA:3.40.309.10 260 456 9.5E-74 T 29-03-2018 AM354_RS11260 2504c465c101e6a32fcd1f89d3ae4b90 484 TIGRFAM TIGR02299 HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase 4 483 7.9E-218 T 29-03-2018 IPR011985 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase GO:0018480|GO:1901023 AM354_RS11260 2504c465c101e6a32fcd1f89d3ae4b90 484 Pfam PF00171 Aldehyde dehydrogenase family 16 470 6.2E-172 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM354_RS11260 2504c465c101e6a32fcd1f89d3ae4b90 484 Gene3D G3DSA:3.40.605.10 1 259 1.1E-95 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM354_RS11260 2504c465c101e6a32fcd1f89d3ae4b90 484 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 271 282 - T 29-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AM354_RS11260 2504c465c101e6a32fcd1f89d3ae4b90 484 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 243 250 - T 29-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AM354_RS09590 b122e28730362d0c0359ae157709c40d 299 Gene3D G3DSA:1.10.10.60 201 247 5.7E-9 T 29-03-2018 AM354_RS09590 b122e28730362d0c0359ae157709c40d 299 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 279 295 2.5E-6 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM354_RS09590 b122e28730362d0c0359ae157709c40d 299 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 264 279 2.5E-6 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM354_RS09590 b122e28730362d0c0359ae157709c40d 299 Pfam PF12833 Helix-turn-helix domain 217 297 4.0E-23 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS09590 b122e28730362d0c0359ae157709c40d 299 Pfam PF14525 AraC-binding-like domain 32 182 1.5E-22 T 29-03-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like AM354_RS09590 b122e28730362d0c0359ae157709c40d 299 SMART SM00342 211 295 3.1E-28 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS09590 b122e28730362d0c0359ae157709c40d 299 SUPERFAMILY SSF46689 246 298 8.06E-11 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS09590 b122e28730362d0c0359ae157709c40d 299 Gene3D G3DSA:2.60.120.10 12 200 0.0011 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS09590 b122e28730362d0c0359ae157709c40d 299 Gene3D G3DSA:1.10.10.60 248 299 7.0E-14 T 29-03-2018 AM354_RS15470 fb11a1d4aa9582683918acb51955a896 728 SUPERFAMILY SSF51445 232 621 1.02E-114 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily AM354_RS15470 fb11a1d4aa9582683918acb51955a896 728 Gene3D G3DSA:2.60.40.10 4 104 2.9E-13 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS15470 fb11a1d4aa9582683918acb51955a896 728 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 109 723 5.2E-301 T 29-03-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|Reactome: R-HSA-3322077 AM354_RS15470 fb11a1d4aa9582683918acb51955a896 728 SUPERFAMILY SSF81296 16 115 3.5E-18 T 29-03-2018 IPR014756 Immunoglobulin E-set AM354_RS15470 fb11a1d4aa9582683918acb51955a896 728 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 101 726 43.487 T 29-03-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|Reactome: R-HSA-3322077 AM354_RS15470 fb11a1d4aa9582683918acb51955a896 728 Gene3D G3DSA:2.60.40.1180 623 726 3.9E-32 T 29-03-2018 AM354_RS15470 fb11a1d4aa9582683918acb51955a896 728 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 125 207 6.3E-25 T 29-03-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077 AM354_RS15470 fb11a1d4aa9582683918acb51955a896 728 Pfam PF00128 Alpha amylase, catalytic domain 273 341 2.0E-10 T 29-03-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AM354_RS15470 fb11a1d4aa9582683918acb51955a896 728 PIRSF PIRSF000463 6 728 2.5E-282 T 29-03-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|Reactome: R-HSA-3322077 AM354_RS15470 fb11a1d4aa9582683918acb51955a896 728 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 628 724 6.5E-20 T 29-03-2018 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 AM354_RS15470 fb11a1d4aa9582683918acb51955a896 728 SMART SM00642 247 596 1.9E-7 T 29-03-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AM354_RS15470 fb11a1d4aa9582683918acb51955a896 728 Gene3D G3DSA:3.20.20.80 230 612 5.0E-77 T 29-03-2018 AM354_RS15470 fb11a1d4aa9582683918acb51955a896 728 SUPERFAMILY SSF81296 117 223 2.27E-36 T 29-03-2018 IPR014756 Immunoglobulin E-set AM354_RS15470 fb11a1d4aa9582683918acb51955a896 728 Gene3D G3DSA:2.60.40.10 112 223 9.1E-35 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS15470 fb11a1d4aa9582683918acb51955a896 728 SUPERFAMILY SSF51011 623 725 5.28E-34 T 29-03-2018 AM354_RS11445 53a5b938c71f9d358a5427598719e512 307 PIRSF PIRSF000105 2 306 9.8E-79 T 29-03-2018 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 AM354_RS11445 53a5b938c71f9d358a5427598719e512 307 SUPERFAMILY SSF51735 6 180 9.37E-47 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS11445 53a5b938c71f9d358a5427598719e512 307 SUPERFAMILY SSF48179 186 292 2.13E-21 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM354_RS11445 53a5b938c71f9d358a5427598719e512 307 Gene3D G3DSA:1.10.1040.10 186 290 1.9E-22 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM354_RS11445 53a5b938c71f9d358a5427598719e512 307 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 7 180 2.9E-51 T 29-03-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM354_RS11445 53a5b938c71f9d358a5427598719e512 307 Gene3D G3DSA:3.40.50.720 2 185 4.5E-45 T 29-03-2018 AM354_RS11445 53a5b938c71f9d358a5427598719e512 307 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 187 284 6.3E-19 T 29-03-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM354_RS03385 40460b0613e82eab878df20caebc9354 795 Pfam PF03484 tRNA synthetase B5 domain 406 471 3.6E-21 T 29-03-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 AM354_RS03385 40460b0613e82eab878df20caebc9354 795 SUPERFAMILY SSF46955 403 475 5.4E-21 T 29-03-2018 IPR009061 Putative DNA-binding domain AM354_RS03385 40460b0613e82eab878df20caebc9354 795 Gene3D G3DSA:3.30.56.10 143 184 1.0E-7 T 29-03-2018 AM354_RS03385 40460b0613e82eab878df20caebc9354 795 Pfam PF03483 B3/4 domain 212 385 1.1E-69 T 29-03-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 AM354_RS03385 40460b0613e82eab878df20caebc9354 795 SMART SM00896 701 794 3.9E-44 T 29-03-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 AM354_RS03385 40460b0613e82eab878df20caebc9354 795 Pfam PF01588 Putative tRNA binding domain 45 145 2.1E-27 T 29-03-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 AM354_RS03385 40460b0613e82eab878df20caebc9354 795 Gene3D G3DSA:2.40.50.140 54 142 3.9E-44 T 29-03-2018 AM354_RS03385 40460b0613e82eab878df20caebc9354 795 Gene3D G3DSA:3.30.56.10 1 53 2.3E-12 T 29-03-2018 AM354_RS03385 40460b0613e82eab878df20caebc9354 795 Gene3D G3DSA:3.50.40.10 195 395 1.6E-73 T 29-03-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 AM354_RS03385 40460b0613e82eab878df20caebc9354 795 SUPERFAMILY SSF55681 467 690 2.14E-55 T 29-03-2018 AM354_RS03385 40460b0613e82eab878df20caebc9354 795 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 788 48.377 T 29-03-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 AM354_RS03385 40460b0613e82eab878df20caebc9354 795 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 794 1.0E-288 T 29-03-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 AM354_RS03385 40460b0613e82eab878df20caebc9354 795 SUPERFAMILY SSF56037 195 394 4.45E-76 T 29-03-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 AM354_RS03385 40460b0613e82eab878df20caebc9354 795 Gene3D G3DSA:3.30.56.10 402 475 3.9E-26 T 29-03-2018 AM354_RS03385 40460b0613e82eab878df20caebc9354 795 SMART SM00873 212 385 2.3E-98 T 29-03-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 AM354_RS03385 40460b0613e82eab878df20caebc9354 795 Gene3D G3DSA:3.30.70.380 698 794 5.7E-24 T 29-03-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 AM354_RS03385 40460b0613e82eab878df20caebc9354 795 SUPERFAMILY SSF50249 35 197 1.69E-50 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS03385 40460b0613e82eab878df20caebc9354 795 Pfam PF03147 Ferredoxin-fold anticodon binding domain 701 794 1.1E-28 T 29-03-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 AM354_RS03385 40460b0613e82eab878df20caebc9354 795 SUPERFAMILY SSF54991 696 794 4.58E-30 T 29-03-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 AM354_RS03385 40460b0613e82eab878df20caebc9354 795 Gene3D G3DSA:3.30.930.10 489 690 1.1E-38 T 29-03-2018 AM354_RS03385 40460b0613e82eab878df20caebc9354 795 SMART SM00874 403 471 5.8E-32 T 29-03-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 AM354_RS12445 dd198d13fbadff6b96dc0781246ee356 342 TIGRFAM TIGR00238 TIGR00238: KamA family protein 3 328 2.2E-134 T 29-03-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase AM354_RS12445 dd198d13fbadff6b96dc0781246ee356 342 PIRSF PIRSF004911 1 342 4.7E-122 T 29-03-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase AM354_RS12445 dd198d13fbadff6b96dc0781246ee356 342 Gene3D G3DSA:3.20.20.70 103 325 8.7E-19 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS12445 dd198d13fbadff6b96dc0781246ee356 342 TIGRFAM TIGR03821 EFP_modif_epmB: EF-P beta-lysylation protein EpmB 15 335 2.6E-159 T 29-03-2018 IPR022462 Lysine-2,3-aminomutase-like AM354_RS12445 dd198d13fbadff6b96dc0781246ee356 342 SUPERFAMILY SSF102114 102 324 6.67E-27 T 29-03-2018 AM354_RS12445 dd198d13fbadff6b96dc0781246ee356 342 Pfam PF04055 Radical SAM superfamily 118 196 2.9E-7 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AM354_RS12445 dd198d13fbadff6b96dc0781246ee356 342 Pfam PF13353 4Fe-4S single cluster domain 111 181 1.6E-6 T 29-03-2018 AM354_RS20670 4fb21283272b5f76b0dd65dd3419cafd 311 Gene3D G3DSA:1.10.10.10 1 89 1.4E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS20670 4fb21283272b5f76b0dd65dd3419cafd 311 Pfam PF03466 LysR substrate binding domain 94 303 8.6E-27 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS20670 4fb21283272b5f76b0dd65dd3419cafd 311 Gene3D G3DSA:3.40.190.10 93 186 2.4E-8 T 29-03-2018 AM354_RS20670 4fb21283272b5f76b0dd65dd3419cafd 311 SUPERFAMILY SSF53850 94 304 3.44E-28 T 29-03-2018 AM354_RS20670 4fb21283272b5f76b0dd65dd3419cafd 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 5.1E-16 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS20670 4fb21283272b5f76b0dd65dd3419cafd 311 SUPERFAMILY SSF46785 6 111 5.79E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS20670 4fb21283272b5f76b0dd65dd3419cafd 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 2.8E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS20670 4fb21283272b5f76b0dd65dd3419cafd 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 2.8E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS20670 4fb21283272b5f76b0dd65dd3419cafd 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 2.8E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS20670 4fb21283272b5f76b0dd65dd3419cafd 311 Gene3D G3DSA:3.40.190.10 187 272 8.6E-17 T 29-03-2018 AM354_RS10955 da09bb615862b990c23f096e42a9e261 289 SUPERFAMILY SSF46689 6 55 7.39E-11 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS10955 da09bb615862b990c23f096e42a9e261 289 Pfam PF06445 GyrI-like small molecule binding domain 127 288 1.0E-22 T 29-03-2018 IPR029442 GyrI-like small molecule binding domain AM354_RS10955 da09bb615862b990c23f096e42a9e261 289 Gene3D G3DSA:3.20.80.10 122 289 1.9E-24 T 29-03-2018 IPR011256 Regulatory factor, effector binding domain AM354_RS10955 da09bb615862b990c23f096e42a9e261 289 SMART SM00871 126 288 4.5E-17 T 29-03-2018 IPR010499 Bacterial transcription activator, effector binding AM354_RS10955 da09bb615862b990c23f096e42a9e261 289 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 55 100 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM354_RS10955 da09bb615862b990c23f096e42a9e261 289 Pfam PF12833 Helix-turn-helix domain 27 105 5.3E-20 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS10955 da09bb615862b990c23f096e42a9e261 289 SUPERFAMILY SSF46689 57 107 5.82E-12 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS10955 da09bb615862b990c23f096e42a9e261 289 Gene3D G3DSA:1.10.10.60 1 57 6.9E-14 T 29-03-2018 AM354_RS10955 da09bb615862b990c23f096e42a9e261 289 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 73 88 4.3E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM354_RS10955 da09bb615862b990c23f096e42a9e261 289 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 88 104 4.3E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM354_RS10955 da09bb615862b990c23f096e42a9e261 289 SMART SM00342 21 104 1.0E-31 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS10955 da09bb615862b990c23f096e42a9e261 289 Gene3D G3DSA:1.10.10.60 58 121 1.6E-13 T 29-03-2018 AM354_RS10955 da09bb615862b990c23f096e42a9e261 289 SUPERFAMILY SSF55136 123 288 2.96E-53 T 29-03-2018 AM354_RS01580 c52225cb70be50e3039dbb305f301afa 237 SUPERFAMILY SSF52540 5 234 2.08E-57 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS01580 c52225cb70be50e3039dbb305f301afa 237 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS01580 c52225cb70be50e3039dbb305f301afa 237 SMART SM00382 30 231 1.7E-5 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS01580 c52225cb70be50e3039dbb305f301afa 237 Pfam PF00005 ABC transporter 22 165 4.1E-27 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS01580 c52225cb70be50e3039dbb305f301afa 237 PIRSF PIRSF039137 1 237 5.6E-103 T 29-03-2018 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 AM354_RS01580 c52225cb70be50e3039dbb305f301afa 237 Gene3D G3DSA:3.40.50.300 1 237 3.7E-56 T 29-03-2018 AM354_RS08465 c9bb89794a467eea48f3d8e9de8c16f9 159 Pfam PF00313 'Cold-shock' DNA-binding domain 1 61 3.4E-11 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM354_RS08465 c9bb89794a467eea48f3d8e9de8c16f9 159 SUPERFAMILY SSF50249 2 62 1.0E-10 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS08465 c9bb89794a467eea48f3d8e9de8c16f9 159 SMART SM00357 2 63 0.0024 T 29-03-2018 IPR011129 Cold shock domain GO:0003676 AM354_RS08465 c9bb89794a467eea48f3d8e9de8c16f9 159 Gene3D G3DSA:2.40.50.140 1 69 7.7E-14 T 29-03-2018 AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 SUPERFAMILY SSF51735 1612 1777 9.47E-24 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 Gene3D G3DSA:3.40.50.720 1607 1857 8.4E-26 T 29-03-2018 AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2056 2071 - T 29-03-2018 IPR006162 Phosphopantetheine attachment site AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 SMART SM00825 Beta-ketoacyl synthase 614 1035 2.2E-128 T 29-03-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 Pfam PF00501 AMP-binding enzyme 30 420 1.6E-79 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 SMART SM00823 Phosphopantetheine attachment site 1951 2020 0.035 T 29-03-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 SMART SM00823 Phosphopantetheine attachment site 1868 1937 0.47 T 29-03-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 SMART SM00823 Phosphopantetheine attachment site 2032 2101 0.33 T 29-03-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 612 858 3.9E-59 T 29-03-2018 IPR014030 Beta-ketoacyl synthase, N-terminal AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 Gene3D G3DSA:3.40.47.10 873 1033 3.4E-47 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 Pfam PF08659 KR domain 1616 1775 1.3E-23 T 29-03-2018 IPR013968 Polyketide synthase, ketoreductase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 Gene3D G3DSA:1.10.1200.10 524 607 2.0E-7 T 29-03-2018 AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 991 1097 5.8E-12 T 29-03-2018 IPR032821 Ketoacyl-synthetase, C-terminal extension Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 Gene3D G3DSA:3.40.50.980 173 328 1.5E-25 T 29-03-2018 AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 ProSitePatterns PS00455 Putative AMP-binding domain signature. 167 178 - T 29-03-2018 IPR020845 AMP-binding, conserved site AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 Gene3D G3DSA:1.10.1200.10 1858 1940 2.5E-14 T 29-03-2018 AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 Gene3D G3DSA:1.10.1200.10 2024 2103 3.2E-10 T 29-03-2018 AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 SUPERFAMILY SSF56801 23 512 2.49E-120 T 29-03-2018 AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 ProSitePatterns PS00012 Phosphopantetheine attachment site. 553 568 - T 29-03-2018 IPR006162 Phosphopantetheine attachment site AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 SUPERFAMILY SSF52777 2294 2533 2.67E-28 T 29-03-2018 AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 SUPERFAMILY SSF47336 1950 2016 3.27E-9 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 SUPERFAMILY SSF52777 2116 2267 4.45E-20 T 29-03-2018 AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 1615 1792 6.3E-9 T 29-03-2018 AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 Gene3D G3DSA:3.40.50.980 23 172 1.6E-37 T 29-03-2018 AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 SUPERFAMILY SSF47336 526 626 6.67E-8 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1892 1907 - T 29-03-2018 IPR006162 Phosphopantetheine attachment site AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 SUPERFAMILY SSF47336 1865 1940 1.15E-9 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 SUPERFAMILY SSF52151 1126 1248 3.35E-7 T 29-03-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 Gene3D G3DSA:3.40.366.10 1114 1444 2.0E-15 T 29-03-2018 AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 Gene3D G3DSA:3.40.47.10 608 870 1.9E-66 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 Gene3D G3DSA:3.30.300.30 414 516 2.7E-21 T 29-03-2018 AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 51 443 8.4E-96 T 29-03-2018 IPR010071 Amino acid adenylation domain AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 Pfam PF13193 AMP-binding enzyme C-terminal domain 428 500 1.1E-7 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 Gene3D G3DSA:1.10.1200.10 1941 2023 9.4E-12 T 29-03-2018 AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 866 983 1.4E-35 T 29-03-2018 IPR014031 Beta-ketoacyl synthase, C-terminal AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 771 787 - T 29-03-2018 IPR018201 Beta-ketoacyl synthase, active site AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 Pfam PF00550 Phosphopantetheine attachment site 2033 2091 5.8E-9 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 Pfam PF00550 Phosphopantetheine attachment site 1954 2016 4.3E-10 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 Pfam PF00550 Phosphopantetheine attachment site 1870 1931 4.5E-9 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 SUPERFAMILY SSF47336 2031 2119 1.09E-7 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 Gene3D G3DSA:2.30.38.10 336 413 5.9E-20 T 29-03-2018 AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 Pfam PF00668 Condensation domain 2116 2531 4.8E-38 T 29-03-2018 IPR001242 Condensation domain AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 SUPERFAMILY SSF53901 754 976 4.22E-76 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 SUPERFAMILY SSF53901 1010 1027 4.22E-76 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 SUPERFAMILY SSF53901 608 727 4.22E-76 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS04395 0f9e4d75b24a7c0a412a80b65291f509 2536 Gene3D G3DSA:3.30.559.10 2104 2312 1.8E-19 T 29-03-2018 AM354_RS18955 c631ace9b89a587245344e9876602852 627 Gene3D G3DSA:3.90.1170.30 44 145 3.1E-24 T 29-03-2018 AM354_RS18955 c631ace9b89a587245344e9876602852 627 Gene3D G3DSA:3.90.1170.30 146 246 1.8E-21 T 29-03-2018 AM354_RS18955 c631ace9b89a587245344e9876602852 627 Gene3D G3DSA:3.90.1170.30 1 43 3.2E-9 T 29-03-2018 AM354_RS18955 c631ace9b89a587245344e9876602852 627 SUPERFAMILY SSF52777 385 626 9.78E-81 T 29-03-2018 AM354_RS18955 c631ace9b89a587245344e9876602852 627 Pfam PF02817 e3 binding domain 324 359 5.3E-15 T 29-03-2018 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 AM354_RS18955 c631ace9b89a587245344e9876602852 627 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 396 626 5.1E-80 T 29-03-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 AM354_RS18955 c631ace9b89a587245344e9876602852 627 Gene3D G3DSA:2.40.50.100 247 320 7.1E-9 T 29-03-2018 AM354_RS18955 c631ace9b89a587245344e9876602852 627 TIGRFAM TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase 195 627 2.7E-226 T 29-03-2018 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex GO:0004742|GO:0006096|GO:0045254 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12 AM354_RS18955 c631ace9b89a587245344e9876602852 627 Gene3D G3DSA:4.10.320.10 321 378 4.3E-20 T 29-03-2018 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 AM354_RS18955 c631ace9b89a587245344e9876602852 627 SUPERFAMILY SSF51230 1 93 7.98E-23 T 29-03-2018 IPR011053 Single hybrid motif AM354_RS18955 c631ace9b89a587245344e9876602852 627 SUPERFAMILY SSF51230 104 196 2.49E-23 T 29-03-2018 IPR011053 Single hybrid motif AM354_RS18955 c631ace9b89a587245344e9876602852 627 Gene3D G3DSA:3.30.559.10 383 627 1.9E-79 T 29-03-2018 AM354_RS18955 c631ace9b89a587245344e9876602852 627 SUPERFAMILY SSF47005 319 363 5.89E-13 T 29-03-2018 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 AM354_RS18955 c631ace9b89a587245344e9876602852 627 SUPERFAMILY SSF51230 204 296 2.75E-23 T 29-03-2018 IPR011053 Single hybrid motif AM354_RS18955 c631ace9b89a587245344e9876602852 627 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 227 256 - T 29-03-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AM354_RS18955 c631ace9b89a587245344e9876602852 627 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 25 54 - T 29-03-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AM354_RS18955 c631ace9b89a587245344e9876602852 627 Pfam PF00364 Biotin-requiring enzyme 106 175 1.0E-21 T 29-03-2018 IPR000089 Biotin/lipoyl attachment AM354_RS18955 c631ace9b89a587245344e9876602852 627 Pfam PF00364 Biotin-requiring enzyme 4 73 1.3E-21 T 29-03-2018 IPR000089 Biotin/lipoyl attachment AM354_RS18955 c631ace9b89a587245344e9876602852 627 Pfam PF00364 Biotin-requiring enzyme 206 275 2.0E-21 T 29-03-2018 IPR000089 Biotin/lipoyl attachment AM354_RS18955 c631ace9b89a587245344e9876602852 627 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 127 156 - T 29-03-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AM354_RS07625 ed48cf95f56a0164a3c6e909cf585c5c 692 SUPERFAMILY SSF161098 139 405 1.06E-40 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS07625 ed48cf95f56a0164a3c6e909cf585c5c 692 SUPERFAMILY SSF161098 434 674 1.87E-44 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS07625 ed48cf95f56a0164a3c6e909cf585c5c 692 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 210 399 5.9E-17 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS07625 ed48cf95f56a0164a3c6e909cf585c5c 692 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 501 677 1.7E-11 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS07625 ed48cf95f56a0164a3c6e909cf585c5c 692 Gene3D G3DSA:1.10.3720.10 425 686 1.4E-34 T 29-03-2018 AM354_RS07625 ed48cf95f56a0164a3c6e909cf585c5c 692 Gene3D G3DSA:1.10.3720.10 140 407 1.3E-33 T 29-03-2018 AM354_RS05400 202fc18e0012f669fb7e84af62649377 105 Pfam PF08755 Hemimethylated DNA-binding protein YccV like 5 96 4.5E-21 T 29-03-2018 IPR011722 Hemimethylated DNA-binding domain GO:0003677 AM354_RS05400 202fc18e0012f669fb7e84af62649377 105 SUPERFAMILY SSF141255 4 96 2.62E-30 T 29-03-2018 IPR011722 Hemimethylated DNA-binding domain GO:0003677 AM354_RS05400 202fc18e0012f669fb7e84af62649377 105 TIGRFAM TIGR02097 yccV: hemimethylated DNA binding domain 4 102 6.2E-35 T 29-03-2018 IPR011722 Hemimethylated DNA-binding domain GO:0003677 AM354_RS05400 202fc18e0012f669fb7e84af62649377 105 Hamap MF_01194 Heat shock protein HspQ [hspQ]. 1 105 39.043 T 29-03-2018 IPR022866 Heat shock protein HspQ AM354_RS05400 202fc18e0012f669fb7e84af62649377 105 Gene3D G3DSA:2.30.30.390 1 105 1.0E-18 T 29-03-2018 IPR011722 Hemimethylated DNA-binding domain GO:0003677 AM354_RS05400 202fc18e0012f669fb7e84af62649377 105 SMART SM00992 3 102 8.2E-40 T 29-03-2018 IPR011722 Hemimethylated DNA-binding domain GO:0003677 AM354_RS05385 60dd651842d87a0b53a6ed189d674dfc 109 PIRSF PIRSF006223 2 109 4.9E-47 T 29-03-2018 IPR007453 Sulphur transfer protein DsrC/TusE AM354_RS05385 60dd651842d87a0b53a6ed189d674dfc 109 Gene3D G3DSA:3.30.1420.10 2 37 1.5E-13 T 29-03-2018 AM354_RS05385 60dd651842d87a0b53a6ed189d674dfc 109 TIGRFAM TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family 2 109 4.4E-51 T 29-03-2018 IPR007453 Sulphur transfer protein DsrC/TusE AM354_RS05385 60dd651842d87a0b53a6ed189d674dfc 109 Gene3D G3DSA:1.10.10.370 39 108 4.6E-35 T 29-03-2018 AM354_RS05385 60dd651842d87a0b53a6ed189d674dfc 109 SUPERFAMILY SSF69721 2 109 1.57E-41 T 29-03-2018 IPR025526 DsrC-like domain AM354_RS05385 60dd651842d87a0b53a6ed189d674dfc 109 Pfam PF04358 DsrC like protein 3 109 7.4E-46 T 29-03-2018 IPR007453 Sulphur transfer protein DsrC/TusE AM354_RS19845 1b0b64f4711c5870f91672b680b0c6d9 550 SUPERFAMILY SSF90123 4 299 2.49E-26 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM354_RS19845 1b0b64f4711c5870f91672b680b0c6d9 550 SMART SM00382 351 536 1.9E-13 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS19845 1b0b64f4711c5870f91672b680b0c6d9 550 TIGRFAM TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter 2 529 5.4E-112 T 29-03-2018 IPR005898 Cyclic peptide transporter GO:0005524|GO:0015197|GO:0015833|GO:0016021 AM354_RS19845 1b0b64f4711c5870f91672b680b0c6d9 550 Pfam PF00005 ABC transporter 345 480 3.0E-24 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS19845 1b0b64f4711c5870f91672b680b0c6d9 550 ProSitePatterns PS00211 ABC transporters family signature. 453 467 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS19845 1b0b64f4711c5870f91672b680b0c6d9 550 Gene3D G3DSA:1.20.1560.10 1 302 2.9E-22 T 29-03-2018 AM354_RS19845 1b0b64f4711c5870f91672b680b0c6d9 550 SUPERFAMILY SSF52540 318 535 2.76E-41 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS19845 1b0b64f4711c5870f91672b680b0c6d9 550 Gene3D G3DSA:3.40.50.300 319 545 3.1E-38 T 29-03-2018 AM354_RS04470 8fafbbe0d90e264099f44bb7e3cb50b9 1029 Pfam PF16353 Domain of unknown function(DUF4981) 615 698 7.2E-12 T 29-03-2018 IPR032312 Beta-galactosidase, domain 4 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AM354_RS04470 8fafbbe0d90e264099f44bb7e3cb50b9 1029 SUPERFAMILY SSF51445 321 598 1.27E-84 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily AM354_RS04470 8fafbbe0d90e264099f44bb7e3cb50b9 1029 Pfam PF02929 Beta galactosidase small chain 729 997 7.1E-60 T 29-03-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AM354_RS04470 8fafbbe0d90e264099f44bb7e3cb50b9 1029 SMART SM01038 727 998 5.4E-107 T 29-03-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AM354_RS04470 8fafbbe0d90e264099f44bb7e3cb50b9 1029 SUPERFAMILY SSF49303 209 319 1.22E-19 T 29-03-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AM354_RS04470 8fafbbe0d90e264099f44bb7e3cb50b9 1029 SUPERFAMILY SSF49785 2 205 8.22E-60 T 29-03-2018 IPR008979 Galactose-binding domain-like AM354_RS04470 8fafbbe0d90e264099f44bb7e3cb50b9 1029 SUPERFAMILY SSF74650 713 999 5.34E-78 T 29-03-2018 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 AM354_RS04470 8fafbbe0d90e264099f44bb7e3cb50b9 1029 Gene3D G3DSA:2.60.120.260 1 206 3.1E-60 T 29-03-2018 IPR008979 Galactose-binding domain-like AM354_RS04470 8fafbbe0d90e264099f44bb7e3cb50b9 1029 PRINTS PR00132 Glycosyl hydrolase family 2 signature 330 344 5.7E-32 T 29-03-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-6798695 AM354_RS04470 8fafbbe0d90e264099f44bb7e3cb50b9 1029 PRINTS PR00132 Glycosyl hydrolase family 2 signature 361 379 5.7E-32 T 29-03-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-6798695 AM354_RS04470 8fafbbe0d90e264099f44bb7e3cb50b9 1029 PRINTS PR00132 Glycosyl hydrolase family 2 signature 507 522 5.7E-32 T 29-03-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-6798695 AM354_RS04470 8fafbbe0d90e264099f44bb7e3cb50b9 1029 PRINTS PR00132 Glycosyl hydrolase family 2 signature 436 451 5.7E-32 T 29-03-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-6798695 AM354_RS04470 8fafbbe0d90e264099f44bb7e3cb50b9 1029 PRINTS PR00132 Glycosyl hydrolase family 2 signature 135 150 5.7E-32 T 29-03-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-6798695 AM354_RS04470 8fafbbe0d90e264099f44bb7e3cb50b9 1029 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 321 603 7.6E-112 T 29-03-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 AM354_RS04470 8fafbbe0d90e264099f44bb7e3cb50b9 1029 Gene3D G3DSA:2.70.98.10 710 999 4.5E-77 T 29-03-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 AM354_RS04470 8fafbbe0d90e264099f44bb7e3cb50b9 1029 Gene3D G3DSA:3.20.20.80 320 600 1.9E-65 T 29-03-2018 AM354_RS04470 8fafbbe0d90e264099f44bb7e3cb50b9 1029 Pfam PF00703 Glycosyl hydrolases family 2 209 319 3.5E-10 T 29-03-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AM354_RS04470 8fafbbe0d90e264099f44bb7e3cb50b9 1029 Gene3D G3DSA:2.60.40.10 601 707 1.3E-15 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS04470 8fafbbe0d90e264099f44bb7e3cb50b9 1029 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 42 204 3.9E-48 T 29-03-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AM354_RS04470 8fafbbe0d90e264099f44bb7e3cb50b9 1029 Gene3D G3DSA:2.60.40.10 208 319 8.2E-17 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS04470 8fafbbe0d90e264099f44bb7e3cb50b9 1029 ProSitePatterns PS00608 Glycosyl hydrolases family 2 acid/base catalyst. 436 450 - T 29-03-2018 IPR023232 Glycoside hydrolase, family 2, active site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-6798695 AM354_RS04470 8fafbbe0d90e264099f44bb7e3cb50b9 1029 ProSitePatterns PS00719 Glycosyl hydrolases family 2 signature 1. 371 396 - T 29-03-2018 IPR023230 Glycoside hydrolase, family 2, conserved site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-6798695 AM354_RS04470 8fafbbe0d90e264099f44bb7e3cb50b9 1029 SUPERFAMILY SSF49303 598 699 4.8E-16 T 29-03-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AM354_RS02650 b204ebde0d30a54f2b6d1a206592f944 436 Pfam PF07690 Major Facilitator Superfamily 31 393 5.7E-40 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS02650 b204ebde0d30a54f2b6d1a206592f944 436 Gene3D G3DSA:1.20.1250.20 237 433 7.1E-18 T 29-03-2018 AM354_RS02650 b204ebde0d30a54f2b6d1a206592f944 436 SUPERFAMILY SSF103473 16 430 6.15E-81 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS02650 b204ebde0d30a54f2b6d1a206592f944 436 Gene3D G3DSA:1.20.1250.20 18 226 1.4E-34 T 29-03-2018 AM354_RS25960 778671f0bb525ac92074913f66614d05 280 TIGRFAM TIGR00828 EIID-AGA: PTS system, mannose/fructose/sorbose family, IID component 8 278 3.1E-145 T 29-03-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 AM354_RS25960 778671f0bb525ac92074913f66614d05 280 Pfam PF03613 PTS system mannose/fructose/sorbose family IID component 9 278 3.0E-112 T 29-03-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 AM354_RS16035 709bcd5dd1eb61d2b111c3d7271f6582 232 SUPERFAMILY SSF54814 2 106 1.54E-37 T 29-03-2018 IPR009019 K homology domain, prokaryotic type GO:0003723 AM354_RS16035 709bcd5dd1eb61d2b111c3d7271f6582 232 Gene3D G3DSA:3.30.1140.32 108 207 3.4E-40 T 29-03-2018 AM354_RS16035 709bcd5dd1eb61d2b111c3d7271f6582 232 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 2.0E-41 T 29-03-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16035 709bcd5dd1eb61d2b111c3d7271f6582 232 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 29-03-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16035 709bcd5dd1eb61d2b111c3d7271f6582 232 SMART SM00322 60 125 1.6E-6 T 29-03-2018 IPR004087 K Homology domain GO:0003676 AM354_RS16035 709bcd5dd1eb61d2b111c3d7271f6582 232 Gene3D G3DSA:3.30.300.20 17 107 1.6E-27 T 29-03-2018 IPR015946 K homology domain-like, alpha/beta AM354_RS16035 709bcd5dd1eb61d2b111c3d7271f6582 232 Pfam PF07650 KH domain 38 111 6.0E-19 T 29-03-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16035 709bcd5dd1eb61d2b111c3d7271f6582 232 SUPERFAMILY SSF54821 108 206 6.93E-41 T 29-03-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16035 709bcd5dd1eb61d2b111c3d7271f6582 232 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 39.213 T 29-03-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 AM354_RS16035 709bcd5dd1eb61d2b111c3d7271f6582 232 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 1.2E-100 T 29-03-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 AM354_RS17435 918da2b00f73fd2b3e6ce4e7111f7646 303 SUPERFAMILY SSF46785 14 98 1.17E-25 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS17435 918da2b00f73fd2b3e6ce4e7111f7646 303 Gene3D G3DSA:3.40.190.10 100 189 7.3E-18 T 29-03-2018 AM354_RS17435 918da2b00f73fd2b3e6ce4e7111f7646 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 15 74 2.9E-23 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS17435 918da2b00f73fd2b3e6ce4e7111f7646 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 41 7.8E-11 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS17435 918da2b00f73fd2b3e6ce4e7111f7646 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 51 62 7.8E-11 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS17435 918da2b00f73fd2b3e6ce4e7111f7646 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 51 7.8E-11 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS17435 918da2b00f73fd2b3e6ce4e7111f7646 303 SUPERFAMILY SSF53850 100 302 4.75E-35 T 29-03-2018 AM354_RS17435 918da2b00f73fd2b3e6ce4e7111f7646 303 Gene3D G3DSA:1.10.10.10 4 98 1.2E-26 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS17435 918da2b00f73fd2b3e6ce4e7111f7646 303 Gene3D G3DSA:3.40.190.10 190 279 4.0E-23 T 29-03-2018 AM354_RS17435 918da2b00f73fd2b3e6ce4e7111f7646 303 Pfam PF03466 LysR substrate binding domain 99 302 1.5E-39 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS19185 5ddec8471f1c040f6cff099f9c89b8ad 403 SUPERFAMILY SSF51905 3 194 1.02E-43 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS19185 5ddec8471f1c040f6cff099f9c89b8ad 403 SUPERFAMILY SSF55424 313 402 1.15E-18 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AM354_RS19185 5ddec8471f1c040f6cff099f9c89b8ad 403 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 2.6E-17 T 29-03-2018 AM354_RS19185 5ddec8471f1c040f6cff099f9c89b8ad 403 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 149 174 2.6E-17 T 29-03-2018 AM354_RS19185 5ddec8471f1c040f6cff099f9c89b8ad 403 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 274 281 2.6E-17 T 29-03-2018 AM354_RS19185 5ddec8471f1c040f6cff099f9c89b8ad 403 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 235 249 2.6E-17 T 29-03-2018 AM354_RS19185 5ddec8471f1c040f6cff099f9c89b8ad 403 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 2.6E-21 T 29-03-2018 AM354_RS19185 5ddec8471f1c040f6cff099f9c89b8ad 403 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 234 250 2.6E-21 T 29-03-2018 AM354_RS19185 5ddec8471f1c040f6cff099f9c89b8ad 403 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 104 122 2.6E-21 T 29-03-2018 AM354_RS19185 5ddec8471f1c040f6cff099f9c89b8ad 403 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 149 167 2.6E-21 T 29-03-2018 AM354_RS19185 5ddec8471f1c040f6cff099f9c89b8ad 403 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 259 281 2.6E-21 T 29-03-2018 AM354_RS19185 5ddec8471f1c040f6cff099f9c89b8ad 403 Gene3D G3DSA:3.50.50.60 1 123 9.1E-16 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS19185 5ddec8471f1c040f6cff099f9c89b8ad 403 Gene3D G3DSA:3.50.50.60 246 328 1.5E-6 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS19185 5ddec8471f1c040f6cff099f9c89b8ad 403 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 9 284 3.4E-51 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS19185 5ddec8471f1c040f6cff099f9c89b8ad 403 SUPERFAMILY SSF51905 149 308 2.24E-25 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS19185 5ddec8471f1c040f6cff099f9c89b8ad 403 Pfam PF14759 Reductase C-terminal 320 402 1.7E-19 T 29-03-2018 IPR028202 Reductase, C-terminal AM354_RS19185 5ddec8471f1c040f6cff099f9c89b8ad 403 Gene3D G3DSA:3.50.50.60 124 245 3.5E-22 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS19185 5ddec8471f1c040f6cff099f9c89b8ad 403 Gene3D G3DSA:3.30.390.30 329 403 5.2E-18 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AM354_RS14930 9830549be8b153b7a281dce8d496174f 329 Pfam PF02653 Branched-chain amino acid transport system / permease component 41 312 9.3E-44 T 29-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AM354_RS14930 9830549be8b153b7a281dce8d496174f 329 Gene3D G3DSA:1.10.3470.10 29 318 8.5E-28 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS04200 9add3e52b24cf202acf609055b52d89e 504 SMART SM00345 31 90 4.0E-10 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS04200 9add3e52b24cf202acf609055b52d89e 504 SUPERFAMILY SSF53383 138 496 8.25E-91 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS04200 9add3e52b24cf202acf609055b52d89e 504 Pfam PF00392 Bacterial regulatory proteins, gntR family 30 90 3.5E-11 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS04200 9add3e52b24cf202acf609055b52d89e 504 Pfam PF00155 Aminotransferase class I and II 151 416 3.7E-27 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM354_RS04200 9add3e52b24cf202acf609055b52d89e 504 Gene3D G3DSA:1.10.10.10 2 91 4.9E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS04200 9add3e52b24cf202acf609055b52d89e 504 Gene3D G3DSA:3.90.1150.10 400 498 4.7E-19 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS04200 9add3e52b24cf202acf609055b52d89e 504 SUPERFAMILY SSF46785 23 94 7.35E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS04200 9add3e52b24cf202acf609055b52d89e 504 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 64 80 1.8E-5 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS04200 9add3e52b24cf202acf609055b52d89e 504 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 64 1.8E-5 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS04200 9add3e52b24cf202acf609055b52d89e 504 Gene3D G3DSA:3.40.640.10 159 399 8.9E-45 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS08150 b0c518ef3eb2cec3f37f77055e2db40b 547 SUPERFAMILY SSF55957 433 543 8.63E-19 T 29-03-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS08150 b0c518ef3eb2cec3f37f77055e2db40b 547 Gene3D G3DSA:3.40.120.10 214 331 7.1E-23 T 29-03-2018 AM354_RS08150 b0c518ef3eb2cec3f37f77055e2db40b 547 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 483 539 1.2E-7 T 29-03-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS08150 b0c518ef3eb2cec3f37f77055e2db40b 547 SUPERFAMILY SSF53738 209 317 2.59E-9 T 29-03-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS08150 b0c518ef3eb2cec3f37f77055e2db40b 547 SUPERFAMILY SSF53738 305 446 9.71E-32 T 29-03-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS08150 b0c518ef3eb2cec3f37f77055e2db40b 547 SUPERFAMILY SSF53738 26 235 2.14E-52 T 29-03-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS08150 b0c518ef3eb2cec3f37f77055e2db40b 547 Gene3D G3DSA:3.40.120.10 12 213 2.2E-47 T 29-03-2018 AM354_RS08150 b0c518ef3eb2cec3f37f77055e2db40b 547 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 40 180 3.0E-38 T 29-03-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS08150 b0c518ef3eb2cec3f37f77055e2db40b 547 TIGRFAM TIGR01132 pgm: phosphoglucomutase, alpha-D-glucose phosphate-specific 1 543 0.0 T 29-03-2018 IPR005852 Phosphoglucomutase, alpha-D-glucose specific GO:0004614|GO:0005975 KEGG: 00010+5.4.2.2|KEGG: 00030+5.4.2.2|KEGG: 00052+5.4.2.2|KEGG: 00230+5.4.2.2|KEGG: 00500+5.4.2.2|KEGG: 00520+5.4.2.2|KEGG: 00521+5.4.2.2|MetaCyc: PWY-2723|MetaCyc: PWY-3801|MetaCyc: PWY-5384|MetaCyc: PWY-5661|MetaCyc: PWY-5940|MetaCyc: PWY-5941|MetaCyc: PWY-622|MetaCyc: PWY-6317|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|MetaCyc: PWY-7343 AM354_RS08150 b0c518ef3eb2cec3f37f77055e2db40b 547 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 320 440 6.1E-29 T 29-03-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS08150 b0c518ef3eb2cec3f37f77055e2db40b 547 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 140 149 - T 29-03-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS08150 b0c518ef3eb2cec3f37f77055e2db40b 547 Gene3D G3DSA:3.30.310.50 443 546 4.0E-20 T 29-03-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS08150 b0c518ef3eb2cec3f37f77055e2db40b 547 Gene3D G3DSA:3.40.120.10 332 421 1.8E-26 T 29-03-2018 AM354_RS08150 b0c518ef3eb2cec3f37f77055e2db40b 547 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 210 317 8.6E-19 T 29-03-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS14880 99076f873593e944aea2ef251a4e00f3 594 SUPERFAMILY SSF47384 214 291 3.92E-10 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS14880 99076f873593e944aea2ef251a4e00f3 594 Gene3D G3DSA:3.40.50.2300 464 593 1.7E-28 T 29-03-2018 AM354_RS14880 99076f873593e944aea2ef251a4e00f3 594 Pfam PF00512 His Kinase A (phospho-acceptor) domain 227 291 4.3E-7 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS14880 99076f873593e944aea2ef251a4e00f3 594 Gene3D G3DSA:3.30.565.10 295 461 1.0E-41 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS14880 99076f873593e944aea2ef251a4e00f3 594 SUPERFAMILY SSF55874 281 453 4.19E-43 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS14880 99076f873593e944aea2ef251a4e00f3 594 Gene3D G3DSA:1.10.287.130 216 287 6.6E-8 T 29-03-2018 AM354_RS14880 99076f873593e944aea2ef251a4e00f3 594 Pfam PF00072 Response regulator receiver domain 475 586 1.8E-17 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS14880 99076f873593e944aea2ef251a4e00f3 594 SMART SM00387 337 452 2.4E-34 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS14880 99076f873593e944aea2ef251a4e00f3 594 SMART SM00448 473 586 1.6E-22 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS14880 99076f873593e944aea2ef251a4e00f3 594 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 338 451 2.6E-25 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS14880 99076f873593e944aea2ef251a4e00f3 594 SMART SM00388 226 291 8.7E-9 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS14880 99076f873593e944aea2ef251a4e00f3 594 SUPERFAMILY SSF52172 472 590 4.98E-28 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS14880 99076f873593e944aea2ef251a4e00f3 594 PRINTS PR00344 Bacterial sensor protein C-terminal signature 436 449 2.5E-15 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS14880 99076f873593e944aea2ef251a4e00f3 594 PRINTS PR00344 Bacterial sensor protein C-terminal signature 395 405 2.5E-15 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS14880 99076f873593e944aea2ef251a4e00f3 594 PRINTS PR00344 Bacterial sensor protein C-terminal signature 412 430 2.5E-15 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS14880 99076f873593e944aea2ef251a4e00f3 594 PRINTS PR00344 Bacterial sensor protein C-terminal signature 377 391 2.5E-15 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS02360 d05ac397e5b560808c7d7cde1f47c010 249 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 29-03-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AM354_RS02360 d05ac397e5b560808c7d7cde1f47c010 249 Gene3D G3DSA:3.40.50.1360 74 235 2.1E-36 T 29-03-2018 AM354_RS02360 d05ac397e5b560808c7d7cde1f47c010 249 Pfam PF00455 DeoR C terminal sensor domain 76 229 6.5E-43 T 29-03-2018 IPR014036 DeoR C-terminal sensor domain AM354_RS02360 d05ac397e5b560808c7d7cde1f47c010 249 Pfam PF08220 DeoR-like helix-turn-helix domain 6 60 1.9E-15 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS02360 d05ac397e5b560808c7d7cde1f47c010 249 SMART SM01134 71 230 9.1E-60 T 29-03-2018 AM354_RS02360 d05ac397e5b560808c7d7cde1f47c010 249 SMART SM00420 6 58 2.1E-14 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS02360 d05ac397e5b560808c7d7cde1f47c010 249 Gene3D G3DSA:1.10.10.10 1 67 3.3E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS02360 d05ac397e5b560808c7d7cde1f47c010 249 SUPERFAMILY SSF46785 5 60 1.48E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS02360 d05ac397e5b560808c7d7cde1f47c010 249 SUPERFAMILY SSF100950 75 233 5.86E-25 T 29-03-2018 AM354_RS02360 d05ac397e5b560808c7d7cde1f47c010 249 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.9E-8 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS02360 d05ac397e5b560808c7d7cde1f47c010 249 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.9E-8 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS01375 70c827a60aa9deb9a487c7025ca890ff 207 Gene3D G3DSA:1.10.357.10 56 205 3.6E-17 T 29-03-2018 AM354_RS01375 70c827a60aa9deb9a487c7025ca890ff 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 1.4E-8 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS01375 70c827a60aa9deb9a487c7025ca890ff 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 1.4E-8 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS01375 70c827a60aa9deb9a487c7025ca890ff 207 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 58 9.4E-17 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS01375 70c827a60aa9deb9a487c7025ca890ff 207 Gene3D G3DSA:1.10.10.60 2 55 2.1E-19 T 29-03-2018 AM354_RS01375 70c827a60aa9deb9a487c7025ca890ff 207 SUPERFAMILY SSF46689 2 71 1.8E-18 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS26080 97113a77fe14f27e5557bad3f3c596bc 511 PIRSF PIRSF002869 1 511 2.4E-179 T 29-03-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AM354_RS26080 97113a77fe14f27e5557bad3f3c596bc 511 Hamap MF_02078 Probable lipid II flippase MurJ [murJ]. 3 467 20.469 T 29-03-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AM354_RS26080 97113a77fe14f27e5557bad3f3c596bc 511 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 2 502 4.9E-169 T 29-03-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AM354_RS26080 97113a77fe14f27e5557bad3f3c596bc 511 Pfam PF03023 MviN-like protein 28 478 1.1E-155 T 29-03-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AM354_RS26080 97113a77fe14f27e5557bad3f3c596bc 511 PRINTS PR01806 Virulence factor MviN signature 33 52 1.3E-87 T 29-03-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AM354_RS26080 97113a77fe14f27e5557bad3f3c596bc 511 PRINTS PR01806 Virulence factor MviN signature 357 376 1.3E-87 T 29-03-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AM354_RS26080 97113a77fe14f27e5557bad3f3c596bc 511 PRINTS PR01806 Virulence factor MviN signature 52 68 1.3E-87 T 29-03-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AM354_RS26080 97113a77fe14f27e5557bad3f3c596bc 511 PRINTS PR01806 Virulence factor MviN signature 157 178 1.3E-87 T 29-03-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AM354_RS26080 97113a77fe14f27e5557bad3f3c596bc 511 PRINTS PR01806 Virulence factor MviN signature 259 285 1.3E-87 T 29-03-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AM354_RS26080 97113a77fe14f27e5557bad3f3c596bc 511 PRINTS PR01806 Virulence factor MviN signature 409 426 1.3E-87 T 29-03-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AM354_RS26080 97113a77fe14f27e5557bad3f3c596bc 511 PRINTS PR01806 Virulence factor MviN signature 133 157 1.3E-87 T 29-03-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AM354_RS16055 085432ff5f62d9b40e7465024b6fef37 123 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 123 28.664 T 29-03-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AM354_RS16055 085432ff5f62d9b40e7465024b6fef37 123 Pfam PF00238 Ribosomal protein L14p/L23e 1 123 6.9E-55 T 29-03-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AM354_RS16055 085432ff5f62d9b40e7465024b6fef37 123 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 123 4.4E-60 T 29-03-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 AM354_RS16055 085432ff5f62d9b40e7465024b6fef37 123 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 29-03-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16055 085432ff5f62d9b40e7465024b6fef37 123 SMART SM01374 1 123 3.9E-86 T 29-03-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AM354_RS16055 085432ff5f62d9b40e7465024b6fef37 123 Gene3D G3DSA:2.40.150.20 1 123 2.9E-53 T 29-03-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AM354_RS16055 085432ff5f62d9b40e7465024b6fef37 123 SUPERFAMILY SSF50193 2 122 1.57E-51 T 29-03-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AM354_RS17210 eb0f724719ceb06f275cd52dece66793 539 Pfam PF00005 ABC transporter 36 175 1.5E-16 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS17210 eb0f724719ceb06f275cd52dece66793 539 Pfam PF00005 ABC transporter 366 487 7.2E-16 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS17210 eb0f724719ceb06f275cd52dece66793 539 SUPERFAMILY SSF52540 22 228 5.8E-35 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS17210 eb0f724719ceb06f275cd52dece66793 539 SMART SM00382 34 219 1.7E-9 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS17210 eb0f724719ceb06f275cd52dece66793 539 SMART SM00382 366 532 2.3E-10 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS17210 eb0f724719ceb06f275cd52dece66793 539 Gene3D G3DSA:3.40.50.300 3 278 1.6E-41 T 29-03-2018 AM354_RS17210 eb0f724719ceb06f275cd52dece66793 539 Gene3D G3DSA:3.40.50.300 292 526 1.7E-33 T 29-03-2018 AM354_RS17210 eb0f724719ceb06f275cd52dece66793 539 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS17210 eb0f724719ceb06f275cd52dece66793 539 SUPERFAMILY SSF52540 360 519 4.51E-32 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS07550 87eee51e0bab559db48313255e7ceb18 367 Gene3D G3DSA:3.40.50.720 169 324 3.2E-27 T 29-03-2018 AM354_RS07550 87eee51e0bab559db48313255e7ceb18 367 SUPERFAMILY SSF51735 166 324 4.51E-43 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS07550 87eee51e0bab559db48313255e7ceb18 367 SMART SM00996 4 364 8.8E-10 T 29-03-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 AM354_RS07550 87eee51e0bab559db48313255e7ceb18 367 SMART SM00997 166 324 7.9E-61 T 29-03-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 AM354_RS07550 87eee51e0bab559db48313255e7ceb18 367 Gene3D G3DSA:3.40.50.1480 3 127 4.7E-19 T 29-03-2018 AM354_RS07550 87eee51e0bab559db48313255e7ceb18 367 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 16 123 2.1E-10 T 29-03-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 AM354_RS07550 87eee51e0bab559db48313255e7ceb18 367 SUPERFAMILY SSF52283 8 165 2.3E-23 T 29-03-2018 AM354_RS07550 87eee51e0bab559db48313255e7ceb18 367 SUPERFAMILY SSF52283 325 360 2.3E-23 T 29-03-2018 AM354_RS07550 87eee51e0bab559db48313255e7ceb18 367 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 180 322 1.5E-33 T 29-03-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 AM354_RS21095 e844910490f946eef257639f58377bd0 486 Gene3D G3DSA:3.40.190.10 33 191 1.4E-22 T 29-03-2018 AM354_RS21095 e844910490f946eef257639f58377bd0 486 SUPERFAMILY SSF53955 432 447 7.51E-37 T 29-03-2018 IPR023346 Lysozyme-like domain AM354_RS21095 e844910490f946eef257639f58377bd0 486 SUPERFAMILY SSF53955 254 397 7.51E-37 T 29-03-2018 IPR023346 Lysozyme-like domain AM354_RS21095 e844910490f946eef257639f58377bd0 486 Pfam PF01464 Transglycosylase SLT domain 296 402 6.9E-25 T 29-03-2018 IPR008258 Transglycosylase SLT domain 1 AM354_RS21095 e844910490f946eef257639f58377bd0 486 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 309 337 - T 29-03-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 AM354_RS21095 e844910490f946eef257639f58377bd0 486 SUPERFAMILY SSF53850 45 267 6.02E-38 T 29-03-2018 AM354_RS21095 e844910490f946eef257639f58377bd0 486 Hamap MF_02016 Membrane-bound lytic murein transglycosylase F [mltF]. 5 475 49.266 T 29-03-2018 IPR023703 Membrane-bound lytic murein transglycosylase F GO:0016837 AM354_RS21095 e844910490f946eef257639f58377bd0 486 SMART SM00062 44 268 2.2E-36 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM354_RS21095 e844910490f946eef257639f58377bd0 486 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 51 267 3.4E-32 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM354_RS21095 e844910490f946eef257639f58377bd0 486 Gene3D G3DSA:1.10.530.10 272 450 1.4E-35 T 29-03-2018 AM354_RS21095 e844910490f946eef257639f58377bd0 486 Gene3D G3DSA:3.40.190.10 192 270 5.8E-4 T 29-03-2018 AM354_RS06910 81215626c82f4f7d831d04c723bd4a0d 296 TIGRFAM TIGR02317 prpB: methylisocitrate lyase 7 291 1.2E-131 T 29-03-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 AM354_RS06910 81215626c82f4f7d831d04c723bd4a0d 296 Hamap MF_01939 2-methylisocitrate lyase [prpB]. 4 292 50.367 T 29-03-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 AM354_RS06910 81215626c82f4f7d831d04c723bd4a0d 296 Gene3D G3DSA:3.20.20.60 2 296 8.7E-91 T 29-03-2018 AM354_RS06910 81215626c82f4f7d831d04c723bd4a0d 296 ProSitePatterns PS00161 Isocitrate lyase signature. 121 126 - T 29-03-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824|GO:0008152 AM354_RS06910 81215626c82f4f7d831d04c723bd4a0d 296 Pfam PF13714 Phosphoenolpyruvate phosphomutase 10 253 6.8E-50 T 29-03-2018 AM354_RS06910 81215626c82f4f7d831d04c723bd4a0d 296 SUPERFAMILY SSF51621 4 290 3.86E-98 T 29-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AM354_RS17125 8eb39824c46abdaf44d765115edc4d97 133 Pfam PF07332 Putative Actinobacterial Holin-X, holin superfamily III 21 129 1.7E-18 T 29-03-2018 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III AM354_RS16440 6390d0f612f8cd41dcef758b4f8617a9 171 Pfam PF04345 Chorismate lyase 14 168 5.4E-35 T 29-03-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745 AM354_RS16440 6390d0f612f8cd41dcef758b4f8617a9 171 Hamap MF_01632 Chorismate pyruvate-lyase [ubiC]. 12 166 26.712 T 29-03-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745 AM354_RS16440 6390d0f612f8cd41dcef758b4f8617a9 171 Gene3D G3DSA:3.40.1410.10 6 166 1.8E-45 T 29-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AM354_RS16440 6390d0f612f8cd41dcef758b4f8617a9 171 SUPERFAMILY SSF64288 8 166 2.75E-49 T 29-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AM354_RS20315 e897979ecd6d4cdabc3cdaf7568d6ba5 182 PIRSF PIRSF011484 1 181 1.1E-69 T 29-03-2018 IPR009822 YaeQ AM354_RS20315 e897979ecd6d4cdabc3cdaf7568d6ba5 182 SMART SM01322 1 176 5.9E-120 T 29-03-2018 IPR009822 YaeQ AM354_RS20315 e897979ecd6d4cdabc3cdaf7568d6ba5 182 Gene3D G3DSA:3.10.640.10 2 177 2.6E-77 T 29-03-2018 AM354_RS20315 e897979ecd6d4cdabc3cdaf7568d6ba5 182 Pfam PF07152 YaeQ protein 1 173 1.6E-75 T 29-03-2018 IPR009822 YaeQ AM354_RS20315 e897979ecd6d4cdabc3cdaf7568d6ba5 182 SUPERFAMILY SSF52980 2 178 3.22E-72 T 29-03-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AM354_RS11845 8fe4d0ce95a3e42d08209fd58b882242 234 TIGRFAM TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL 5 226 2.8E-107 T 29-03-2018 IPR012701 Phosphonate C-P lyase system, PhnL KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AM354_RS11845 8fe4d0ce95a3e42d08209fd58b882242 234 Pfam PF00005 ABC transporter 27 181 7.7E-28 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS11845 8fe4d0ce95a3e42d08209fd58b882242 234 SUPERFAMILY SSF52540 4 229 5.75E-48 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS11845 8fe4d0ce95a3e42d08209fd58b882242 234 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS11845 8fe4d0ce95a3e42d08209fd58b882242 234 Gene3D G3DSA:3.40.50.300 1 233 5.7E-47 T 29-03-2018 AM354_RS11845 8fe4d0ce95a3e42d08209fd58b882242 234 SMART SM00382 36 229 3.8E-7 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS14810 a3c5bae0af7135e4bf6ed5804cc1336d 311 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 259 272 - T 29-03-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AM354_RS14810 a3c5bae0af7135e4bf6ed5804cc1336d 311 Gene3D G3DSA:3.40.1190.20 2 311 5.4E-58 T 29-03-2018 IPR029056 Ribokinase-like AM354_RS14810 a3c5bae0af7135e4bf6ed5804cc1336d 311 SUPERFAMILY SSF53613 5 304 7.37E-74 T 29-03-2018 IPR029056 Ribokinase-like AM354_RS14810 a3c5bae0af7135e4bf6ed5804cc1336d 311 Pfam PF00294 pfkB family carbohydrate kinase 5 306 1.3E-67 T 29-03-2018 IPR011611 Carbohydrate kinase PfkB AM354_RS20785 b41a6a945f8c48221bdc469dd95806df 356 TIGRFAM TIGR01540 portal_PBSX: phage portal protein, PBSX family 67 336 1.3E-64 T 29-03-2018 IPR006430 Phage portal protein PBSX family AM354_RS20785 b41a6a945f8c48221bdc469dd95806df 356 Pfam PF04860 Phage portal protein 113 347 4.0E-11 T 29-03-2018 IPR006944 Bacteriophage/Gene transfer agent portal protein AM354_RS20785 b41a6a945f8c48221bdc469dd95806df 356 PIRSF PIRSF018494 1 353 6.9E-147 T 29-03-2018 IPR030935 Phage portal protein PBSX family, Proteobacteria AM354_RS25120 0e1645d3c3877f4222d611b0c5112807 400 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 6 214 1.2E-69 T 29-03-2018 IPR017732 Type IV / VI secretion system, DotU AM354_RS25120 0e1645d3c3877f4222d611b0c5112807 400 TIGRFAM TIGR03350 type_VI_ompA: type VI secretion system peptidoglycan-associated domain 245 379 6.0E-48 T 29-03-2018 IPR017733 Type VI secretion system peptidoglycan-associated domain AM354_RS25120 0e1645d3c3877f4222d611b0c5112807 400 Pfam PF00691 OmpA family 276 374 9.0E-19 T 29-03-2018 IPR006665 OmpA-like domain AM354_RS25120 0e1645d3c3877f4222d611b0c5112807 400 SUPERFAMILY SSF103088 251 380 2.09E-28 T 29-03-2018 IPR006665 OmpA-like domain AM354_RS25120 0e1645d3c3877f4222d611b0c5112807 400 Gene3D G3DSA:3.30.1330.60 238 399 3.5E-34 T 29-03-2018 IPR006665 OmpA-like domain AM354_RS25120 0e1645d3c3877f4222d611b0c5112807 400 Pfam PF09850 Type VI secretion system protein DotU 7 209 9.4E-71 T 29-03-2018 IPR017732 Type IV / VI secretion system, DotU AM354_RS10200 0032283e8db7e4c5424d940ab8676559 461 SUPERFAMILY SSF51445 2 461 3.26E-156 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily AM354_RS10200 0032283e8db7e4c5424d940ab8676559 461 Gene3D G3DSA:3.20.20.80 2 461 6.6E-141 T 29-03-2018 AM354_RS10200 0032283e8db7e4c5424d940ab8676559 461 Pfam PF00232 Glycosyl hydrolase family 1 3 459 3.8E-130 T 29-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM354_RS10200 0032283e8db7e4c5424d940ab8676559 461 PRINTS PR00131 Glycosyl hydrolase family 1 signature 384 395 1.0E-14 T 29-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM354_RS10200 0032283e8db7e4c5424d940ab8676559 461 PRINTS PR00131 Glycosyl hydrolase family 1 signature 360 368 1.0E-14 T 29-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM354_RS10200 0032283e8db7e4c5424d940ab8676559 461 PRINTS PR00131 Glycosyl hydrolase family 1 signature 429 441 1.0E-14 T 29-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM354_RS10200 0032283e8db7e4c5424d940ab8676559 461 PRINTS PR00131 Glycosyl hydrolase family 1 signature 288 302 1.0E-14 T 29-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM354_RS10200 0032283e8db7e4c5424d940ab8676559 461 PRINTS PR00131 Glycosyl hydrolase family 1 signature 405 422 1.0E-14 T 29-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM354_RS10200 0032283e8db7e4c5424d940ab8676559 461 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 360 368 - T 29-03-2018 IPR018120 Glycoside hydrolase family 1, active site AM354_RS03760 9a9692b51c89ec72beeec6fb40fe4987 185 Pfam PF01381 Helix-turn-helix 13 64 6.2E-13 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM354_RS03760 9a9692b51c89ec72beeec6fb40fe4987 185 Pfam PF07883 Cupin domain 111 178 9.2E-16 T 29-03-2018 IPR013096 Cupin 2, conserved barrel AM354_RS03760 9a9692b51c89ec72beeec6fb40fe4987 185 Gene3D G3DSA:1.10.260.40 1 70 2.9E-16 T 29-03-2018 AM354_RS03760 9a9692b51c89ec72beeec6fb40fe4987 185 SMART SM00530 11 66 1.7E-13 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM354_RS03760 9a9692b51c89ec72beeec6fb40fe4987 185 SUPERFAMILY SSF51182 51 183 3.24E-29 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS03760 9a9692b51c89ec72beeec6fb40fe4987 185 Gene3D G3DSA:2.60.120.10 71 184 1.9E-18 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS03760 9a9692b51c89ec72beeec6fb40fe4987 185 SUPERFAMILY SSF47413 6 72 5.63E-16 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS16135 cb50d091d8ce8177f57bdf3caaed5e6b 129 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 27.022 T 29-03-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS16135 cb50d091d8ce8177f57bdf3caaed5e6b 129 Gene3D G3DSA:3.90.1030.10 1 117 3.3E-50 T 29-03-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS16135 cb50d091d8ce8177f57bdf3caaed5e6b 129 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 29-03-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS16135 cb50d091d8ce8177f57bdf3caaed5e6b 129 Pfam PF01196 Ribosomal protein L17 20 116 1.4E-34 T 29-03-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS16135 cb50d091d8ce8177f57bdf3caaed5e6b 129 SUPERFAMILY SSF64263 1 118 5.36E-51 T 29-03-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS16135 cb50d091d8ce8177f57bdf3caaed5e6b 129 TIGRFAM TIGR00059 L17: ribosomal protein bL17 7 117 7.1E-51 T 29-03-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS00400 21a7ef33952c4352bade189cbaa1d858 154 Pfam PF02810 SEC-C motif 136 154 1.5E-9 T 29-03-2018 IPR004027 SEC-C motif AM354_RS00400 21a7ef33952c4352bade189cbaa1d858 154 Pfam PF02810 SEC-C motif 3 19 2.6E-4 T 29-03-2018 IPR004027 SEC-C motif AM354_RS00400 21a7ef33952c4352bade189cbaa1d858 154 SUPERFAMILY SSF103642 134 153 6.05E-7 T 29-03-2018 AM354_RS00400 21a7ef33952c4352bade189cbaa1d858 154 Hamap MF_00612 UPF0225 protein YchJ [ychJ]. 1 130 28.505 T 29-03-2018 IPR023006 Uncharacterised protein family UPF0225 AM354_RS00400 21a7ef33952c4352bade189cbaa1d858 154 SUPERFAMILY SSF54427 25 130 1.45E-37 T 29-03-2018 IPR032710 NTF2-like domain AM354_RS00400 21a7ef33952c4352bade189cbaa1d858 154 Gene3D G3DSA:3.10.450.50 3 132 1.8E-45 T 29-03-2018 AM354_RS00400 21a7ef33952c4352bade189cbaa1d858 154 Gene3D G3DSA:3.10.450.50 138 154 0.061 T 29-03-2018 AM354_RS02105 8113aa95acf95e0cddac2f63dbcda3ca 1399 SUPERFAMILY SSF51905 430 558 2.96E-13 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS02105 8113aa95acf95e0cddac2f63dbcda3ca 1399 Pfam PF04324 BFD-like [2Fe-2S] binding domain 847 893 9.5E-10 T 29-03-2018 IPR007419 BFD-like [2Fe-2S]-binding domain AM354_RS02105 8113aa95acf95e0cddac2f63dbcda3ca 1399 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 983 1043 6.4E-12 T 29-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM354_RS02105 8113aa95acf95e0cddac2f63dbcda3ca 1399 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 1278 1382 5.9E-29 T 29-03-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 AM354_RS02105 8113aa95acf95e0cddac2f63dbcda3ca 1399 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 1055 1189 2.7E-19 T 29-03-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM354_RS02105 8113aa95acf95e0cddac2f63dbcda3ca 1399 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 258 280 1.7E-19 T 29-03-2018 AM354_RS02105 8113aa95acf95e0cddac2f63dbcda3ca 1399 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 101 119 1.7E-19 T 29-03-2018 AM354_RS02105 8113aa95acf95e0cddac2f63dbcda3ca 1399 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 146 164 1.7E-19 T 29-03-2018 AM354_RS02105 8113aa95acf95e0cddac2f63dbcda3ca 1399 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 233 249 1.7E-19 T 29-03-2018 AM354_RS02105 8113aa95acf95e0cddac2f63dbcda3ca 1399 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 1.7E-19 T 29-03-2018 AM354_RS02105 8113aa95acf95e0cddac2f63dbcda3ca 1399 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 2.5E-8 T 29-03-2018 AM354_RS02105 8113aa95acf95e0cddac2f63dbcda3ca 1399 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 234 248 2.5E-8 T 29-03-2018 AM354_RS02105 8113aa95acf95e0cddac2f63dbcda3ca 1399 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 146 171 2.5E-8 T 29-03-2018 AM354_RS02105 8113aa95acf95e0cddac2f63dbcda3ca 1399 Gene3D G3DSA:2.102.10.10 1274 1393 1.4E-16 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AM354_RS02105 8113aa95acf95e0cddac2f63dbcda3ca 1399 SUPERFAMILY SSF51905 145 307 1.45E-25 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS02105 8113aa95acf95e0cddac2f63dbcda3ca 1399 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 1102 1118 - T 29-03-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM354_RS02105 8113aa95acf95e0cddac2f63dbcda3ca 1399 Pfam PF13806 Rieske-like [2Fe-2S] domain 1278 1382 2.6E-32 T 29-03-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 AM354_RS02105 8113aa95acf95e0cddac2f63dbcda3ca 1399 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 430 1223 0.0 T 29-03-2018 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 AM354_RS02105 8113aa95acf95e0cddac2f63dbcda3ca 1399 Gene3D G3DSA:3.50.50.60 1 133 1.1E-16 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS02105 8113aa95acf95e0cddac2f63dbcda3ca 1399 Gene3D G3DSA:3.40.50.720 134 160 0.13 T 29-03-2018 AM354_RS02105 8113aa95acf95e0cddac2f63dbcda3ca 1399 Gene3D G3DSA:3.90.480.10 734 1051 2.1E-19 T 29-03-2018 AM354_RS02105 8113aa95acf95e0cddac2f63dbcda3ca 1399 SUPERFAMILY SSF51905 4 191 3.77E-44 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS02105 8113aa95acf95e0cddac2f63dbcda3ca 1399 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 434 709 1.2E-45 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS02105 8113aa95acf95e0cddac2f63dbcda3ca 1399 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 284 4.2E-55 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS02105 8113aa95acf95e0cddac2f63dbcda3ca 1399 SUPERFAMILY SSF55124 925 1064 6.54E-27 T 29-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM354_RS02105 8113aa95acf95e0cddac2f63dbcda3ca 1399 Gene3D G3DSA:3.50.50.60 418 525 7.5E-5 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS02105 8113aa95acf95e0cddac2f63dbcda3ca 1399 Gene3D G3DSA:3.50.50.60 526 666 1.1E-30 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS02105 8113aa95acf95e0cddac2f63dbcda3ca 1399 SUPERFAMILY SSF51905 534 732 3.73E-38 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS02105 8113aa95acf95e0cddac2f63dbcda3ca 1399 Gene3D G3DSA:3.50.50.60 670 733 4.3E-8 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS02105 8113aa95acf95e0cddac2f63dbcda3ca 1399 SUPERFAMILY SSF56014 1056 1226 7.72E-49 T 29-03-2018 AM354_RS02105 8113aa95acf95e0cddac2f63dbcda3ca 1399 Gene3D G3DSA:3.50.50.60 161 317 3.5E-27 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS02105 8113aa95acf95e0cddac2f63dbcda3ca 1399 SUPERFAMILY SSF50022 1277 1383 1.25E-28 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AM354_RS02105 8113aa95acf95e0cddac2f63dbcda3ca 1399 Gene3D G3DSA:3.30.413.10 1053 1222 1.8E-39 T 29-03-2018 AM354_RS02105 8113aa95acf95e0cddac2f63dbcda3ca 1399 PRINTS PR00397 Sirohaem Fe-binding site signature 1059 1077 2.5E-6 T 29-03-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM354_RS02105 8113aa95acf95e0cddac2f63dbcda3ca 1399 PRINTS PR00397 Sirohaem Fe-binding site signature 1102 1120 2.5E-6 T 29-03-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM354_RS05305 f9d2592f5f2d179cf0319629d2651f66 1026 SUPERFAMILY SSF82714 701 784 9.02E-17 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS05305 f9d2592f5f2d179cf0319629d2651f66 1026 Pfam PF00873 AcrB/AcrD/AcrF family 4 1003 8.1E-267 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS05305 f9d2592f5f2d179cf0319629d2651f66 1026 Gene3D G3DSA:1.20.1640.10 308 501 4.3E-43 T 29-03-2018 AM354_RS05305 f9d2592f5f2d179cf0319629d2651f66 1026 SUPERFAMILY SSF82693 41 130 1.13E-22 T 29-03-2018 AM354_RS05305 f9d2592f5f2d179cf0319629d2651f66 1026 Gene3D G3DSA:1.20.1640.10 784 1006 3.2E-42 T 29-03-2018 AM354_RS05305 f9d2592f5f2d179cf0319629d2651f66 1026 Gene3D G3DSA:3.30.70.1320 137 217 0.013 T 29-03-2018 AM354_RS05305 f9d2592f5f2d179cf0319629d2651f66 1026 Gene3D G3DSA:3.30.70.1320 218 307 8.5E-20 T 29-03-2018 AM354_RS05305 f9d2592f5f2d179cf0319629d2651f66 1026 SUPERFAMILY SSF82866 299 489 4.32E-47 T 29-03-2018 AM354_RS05305 f9d2592f5f2d179cf0319629d2651f66 1026 Gene3D G3DSA:3.30.70.1430 40 136 4.5E-24 T 29-03-2018 AM354_RS05305 f9d2592f5f2d179cf0319629d2651f66 1026 SUPERFAMILY SSF82693 267 321 1.02E-17 T 29-03-2018 AM354_RS05305 f9d2592f5f2d179cf0319629d2651f66 1026 SUPERFAMILY SSF82693 137 181 1.02E-17 T 29-03-2018 AM354_RS05305 f9d2592f5f2d179cf0319629d2651f66 1026 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 4.3E-72 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS05305 f9d2592f5f2d179cf0319629d2651f66 1026 PRINTS PR00702 Acriflavin resistance protein family signature 540 557 4.3E-72 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS05305 f9d2592f5f2d179cf0319629d2651f66 1026 PRINTS PR00702 Acriflavin resistance protein family signature 437 460 4.3E-72 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS05305 f9d2592f5f2d179cf0319629d2651f66 1026 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 4.3E-72 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS05305 f9d2592f5f2d179cf0319629d2651f66 1026 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 4.3E-72 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS05305 f9d2592f5f2d179cf0319629d2651f66 1026 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 4.3E-72 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS05305 f9d2592f5f2d179cf0319629d2651f66 1026 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 4.3E-72 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS05305 f9d2592f5f2d179cf0319629d2651f66 1026 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 4.3E-72 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS05305 f9d2592f5f2d179cf0319629d2651f66 1026 SUPERFAMILY SSF82693 553 650 3.14E-16 T 29-03-2018 AM354_RS05305 f9d2592f5f2d179cf0319629d2651f66 1026 SUPERFAMILY SSF82714 183 264 1.7E-18 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS05305 f9d2592f5f2d179cf0319629d2651f66 1026 Gene3D G3DSA:3.30.2090.10 698 783 2.1E-13 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS05305 f9d2592f5f2d179cf0319629d2651f66 1026 Gene3D G3DSA:3.30.70.1430 555 650 3.6E-5 T 29-03-2018 AM354_RS05305 f9d2592f5f2d179cf0319629d2651f66 1026 SUPERFAMILY SSF82866 785 1005 5.36E-44 T 29-03-2018 AM354_RS06140 cafb542bc32be04f9541f22263de2089 327 TIGRFAM TIGR00383 corA: magnesium and cobalt transport protein CorA 26 327 2.8E-60 T 29-03-2018 IPR004488 Magnesium/cobalt transport protein CorA GO:0006824|GO:0015087|GO:0015095|GO:0015693|GO:0016020 AM354_RS06140 cafb542bc32be04f9541f22263de2089 327 Gene3D G3DSA:1.20.58.340 138 258 2.6E-27 T 29-03-2018 AM354_RS06140 cafb542bc32be04f9541f22263de2089 327 Gene3D G3DSA:1.20.58.340 259 327 2.4E-14 T 29-03-2018 AM354_RS06140 cafb542bc32be04f9541f22263de2089 327 Pfam PF01544 CorA-like Mg2+ transporter protein 35 323 1.4E-60 T 29-03-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 AM354_RS06140 cafb542bc32be04f9541f22263de2089 327 Gene3D G3DSA:3.30.460.20 1 137 2.7E-33 T 29-03-2018 AM354_RS06140 cafb542bc32be04f9541f22263de2089 327 SUPERFAMILY SSF143865 6 259 3.4E-66 T 29-03-2018 AM354_RS06140 cafb542bc32be04f9541f22263de2089 327 SUPERFAMILY SSF144083 262 323 5.89E-16 T 29-03-2018 AM354_RS21185 efd7be0ebb1d2e627535df637c73583b 396 SUPERFAMILY SSF46458 1 142 4.82E-38 T 29-03-2018 IPR009050 Globin-like AM354_RS21185 efd7be0ebb1d2e627535df637c73583b 396 Gene3D G3DSA:2.40.30.10 157 254 2.7E-26 T 29-03-2018 AM354_RS21185 efd7be0ebb1d2e627535df637c73583b 396 Hamap MF_01252 Flavohemoprotein [hmp]. 1 396 57.667 T 29-03-2018 IPR023950 Flavohemoprotein GO:0008941|GO:0019825|GO:0020037|GO:0051409|GO:0055114|GO:0071949 AM354_RS21185 efd7be0ebb1d2e627535df637c73583b 396 Gene3D G3DSA:1.10.490.10 1 156 9.9E-41 T 29-03-2018 AM354_RS21185 efd7be0ebb1d2e627535df637c73583b 396 PRINTS PR00410 Phenol hydroxylase reductase family signature 247 256 5.8E-5 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AM354_RS21185 efd7be0ebb1d2e627535df637c73583b 396 PRINTS PR00410 Phenol hydroxylase reductase family signature 183 195 5.8E-5 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AM354_RS21185 efd7be0ebb1d2e627535df637c73583b 396 PRINTS PR00410 Phenol hydroxylase reductase family signature 358 366 5.8E-5 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AM354_RS21185 efd7be0ebb1d2e627535df637c73583b 396 PRINTS PR00410 Phenol hydroxylase reductase family signature 263 282 5.8E-5 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AM354_RS21185 efd7be0ebb1d2e627535df637c73583b 396 Pfam PF00970 Oxidoreductase FAD-binding domain 169 252 3.6E-9 T 29-03-2018 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 AM354_RS21185 efd7be0ebb1d2e627535df637c73583b 396 Pfam PF00175 Oxidoreductase NAD-binding domain 264 371 2.7E-15 T 29-03-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AM354_RS21185 efd7be0ebb1d2e627535df637c73583b 396 SUPERFAMILY SSF52343 255 394 3.01E-38 T 29-03-2018 AM354_RS21185 efd7be0ebb1d2e627535df637c73583b 396 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 183 193 9.3E-5 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM354_RS21185 efd7be0ebb1d2e627535df637c73583b 396 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 204 211 9.3E-5 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM354_RS21185 efd7be0ebb1d2e627535df637c73583b 396 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 358 366 9.3E-5 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM354_RS21185 efd7be0ebb1d2e627535df637c73583b 396 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 263 282 9.3E-5 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM354_RS21185 efd7be0ebb1d2e627535df637c73583b 396 Gene3D G3DSA:3.40.50.80 255 396 8.3E-23 T 29-03-2018 AM354_RS21185 efd7be0ebb1d2e627535df637c73583b 396 Pfam PF00042 Globin 7 102 1.1E-13 T 29-03-2018 IPR000971 Globin GO:0020037 AM354_RS21185 efd7be0ebb1d2e627535df637c73583b 396 SUPERFAMILY SSF63380 148 253 1.19E-28 T 29-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AM354_RS17370 4d3f90f7349f5a3190071a1e7a192a12 649 Gene3D G3DSA:3.30.450.40 51 212 2.9E-4 T 29-03-2018 IPR029016 GAF domain-like AM354_RS17370 4d3f90f7349f5a3190071a1e7a192a12 649 Pfam PF02954 Bacterial regulatory protein, Fis family 598 638 1.5E-11 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AM354_RS17370 4d3f90f7349f5a3190071a1e7a192a12 649 SUPERFAMILY SSF55785 217 311 7.15E-9 T 29-03-2018 IPR000014 PAS domain AM354_RS17370 4d3f90f7349f5a3190071a1e7a192a12 649 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 621 641 5.1E-6 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AM354_RS17370 4d3f90f7349f5a3190071a1e7a192a12 649 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 604 621 5.1E-6 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AM354_RS17370 4d3f90f7349f5a3190071a1e7a192a12 649 Pfam PF00158 Sigma-54 interaction domain 341 501 2.1E-34 T 29-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AM354_RS17370 4d3f90f7349f5a3190071a1e7a192a12 649 SMART SM00091 213 280 3.5E-7 T 29-03-2018 IPR000014 PAS domain AM354_RS17370 4d3f90f7349f5a3190071a1e7a192a12 649 Gene3D G3DSA:1.10.10.60 577 645 2.9E-17 T 29-03-2018 AM354_RS17370 4d3f90f7349f5a3190071a1e7a192a12 649 SUPERFAMILY SSF52540 343 576 5.62E-42 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS17370 4d3f90f7349f5a3190071a1e7a192a12 649 Pfam PF00989 PAS fold 215 314 3.5E-11 T 29-03-2018 IPR013767 PAS fold GO:0006355 AM354_RS17370 4d3f90f7349f5a3190071a1e7a192a12 649 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 361 374 - T 29-03-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AM354_RS17370 4d3f90f7349f5a3190071a1e7a192a12 649 Gene3D G3DSA:3.40.50.300 335 506 7.2E-16 T 29-03-2018 AM354_RS17370 4d3f90f7349f5a3190071a1e7a192a12 649 Gene3D G3DSA:3.30.450.20 213 314 1.6E-10 T 29-03-2018 AM354_RS17370 4d3f90f7349f5a3190071a1e7a192a12 649 SUPERFAMILY SSF46689 565 641 7.17E-12 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS17370 4d3f90f7349f5a3190071a1e7a192a12 649 Gene3D G3DSA:1.10.8.60 507 576 3.1E-15 T 29-03-2018 AM354_RS07165 22a3c06a8f08cec6d6bd8d009a614a36 609 Gene3D G3DSA:3.10.490.10 476 608 2.3E-25 T 29-03-2018 AM354_RS07165 22a3c06a8f08cec6d6bd8d009a614a36 609 Pfam PF01425 Amidase 45 447 1.5E-87 T 29-03-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AM354_RS07165 22a3c06a8f08cec6d6bd8d009a614a36 609 TIGRFAM TIGR02713 allophanate_hyd: allophanate hydrolase 47 604 1.6E-244 T 29-03-2018 IPR014085 Allophanate hydrolase KEGG: 00220+3.5.1.54|KEGG: 00791+3.5.1.54|MetaCyc: PWY-5169|MetaCyc: PWY-5703 AM354_RS07165 22a3c06a8f08cec6d6bd8d009a614a36 609 SUPERFAMILY SSF75304 42 456 1.57E-107 T 29-03-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AM354_RS07165 22a3c06a8f08cec6d6bd8d009a614a36 609 Gene3D G3DSA:3.90.1300.10 8 462 1.5E-108 T 29-03-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AM354_RS13950 3912178b24841d614611ecb94a106067 244 SUPERFAMILY SSF109755 13 228 5.23E-70 T 29-03-2018 AM354_RS13950 3912178b24841d614611ecb94a106067 244 PIRSF PIRSF003107 7 226 4.7E-68 T 29-03-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 AM354_RS13950 3912178b24841d614611ecb94a106067 244 Pfam PF01895 PhoU domain 26 111 6.5E-22 T 29-03-2018 IPR026022 PhoU domain AM354_RS13950 3912178b24841d614611ecb94a106067 244 Pfam PF01895 PhoU domain 128 212 5.0E-17 T 29-03-2018 IPR026022 PhoU domain AM354_RS13950 3912178b24841d614611ecb94a106067 244 Gene3D G3DSA:1.20.58.220 120 233 3.5E-25 T 29-03-2018 AM354_RS13950 3912178b24841d614611ecb94a106067 244 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 13 221 1.9E-73 T 29-03-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 AM354_RS13950 3912178b24841d614611ecb94a106067 244 Gene3D G3DSA:1.20.58.220 6 119 1.6E-28 T 29-03-2018 AM354_RS05610 c36a83cde7e2cd16afcae8a2b97e1ce6 257 Gene3D G3DSA:3.40.50.620 70 212 1.4E-23 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS05610 c36a83cde7e2cd16afcae8a2b97e1ce6 257 Pfam PF02698 DUF218 domain 81 242 2.6E-23 T 29-03-2018 IPR003848 Domain of unknown function DUF218 AM354_RS07690 efd0cb6464fcca421ab3afa0c0461ea0 81 TIGRFAM TIGR01682 moaD: molybdopterin converting factor, subunit 1 2 81 4.4E-23 T 29-03-2018 IPR010034 Molybdopterin converting factor, subunit 1 GO:0006777 Reactome: R-HSA-947581 AM354_RS07690 efd0cb6464fcca421ab3afa0c0461ea0 81 SUPERFAMILY SSF54285 1 81 1.79E-22 T 29-03-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp AM354_RS07690 efd0cb6464fcca421ab3afa0c0461ea0 81 Pfam PF02597 ThiS family 4 81 4.3E-19 T 29-03-2018 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 Reactome: R-HSA-947581 AM354_RS07690 efd0cb6464fcca421ab3afa0c0461ea0 81 Gene3D G3DSA:3.10.20.30 1 81 5.4E-19 T 29-03-2018 IPR012675 Beta-grasp domain AM354_RS18075 4798da076ba54753c6af500ab5cb2b0a 298 SUPERFAMILY SSF53850 94 295 1.25E-34 T 29-03-2018 AM354_RS18075 4798da076ba54753c6af500ab5cb2b0a 298 SUPERFAMILY SSF46785 5 114 9.8E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS18075 4798da076ba54753c6af500ab5cb2b0a 298 Pfam PF03466 LysR substrate binding domain 93 293 4.3E-35 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS18075 4798da076ba54753c6af500ab5cb2b0a 298 Gene3D G3DSA:3.40.190.10 184 269 3.4E-14 T 29-03-2018 AM354_RS18075 4798da076ba54753c6af500ab5cb2b0a 298 Gene3D G3DSA:1.10.10.10 1 87 1.2E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS18075 4798da076ba54753c6af500ab5cb2b0a 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 1.3E-17 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS18075 4798da076ba54753c6af500ab5cb2b0a 298 Gene3D G3DSA:3.40.190.10 93 183 1.9E-19 T 29-03-2018 AM354_RS18075 4798da076ba54753c6af500ab5cb2b0a 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 1.4E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS18075 4798da076ba54753c6af500ab5cb2b0a 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 1.4E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS18075 4798da076ba54753c6af500ab5cb2b0a 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 1.4E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS06210 a301284943d54c2af8eacffc101e1882 206 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 56 105 2.0E-23 T 29-03-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 AM354_RS06210 a301284943d54c2af8eacffc101e1882 206 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 33 106 4.5E-29 T 29-03-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 AM354_RS06210 a301284943d54c2af8eacffc101e1882 206 SUPERFAMILY SSF141734 6 122 1.44E-44 T 29-03-2018 AM354_RS06210 a301284943d54c2af8eacffc101e1882 206 Gene3D G3DSA:1.10.287.1080 111 205 2.1E-20 T 29-03-2018 AM354_RS06210 a301284943d54c2af8eacffc101e1882 206 SUPERFAMILY SSF101386 114 203 1.44E-23 T 29-03-2018 AM354_RS06210 a301284943d54c2af8eacffc101e1882 206 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 112 198 18.403 T 29-03-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 AM354_RS06210 a301284943d54c2af8eacffc101e1882 206 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 116 201 1.8E-15 T 29-03-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 AM354_RS06210 a301284943d54c2af8eacffc101e1882 206 Hamap MF_01019 Histidine biosynthesis bifunctional protein HisIE [hisI]. 8 203 37.267 T 29-03-2018 IPR023019 Histidine biosynthesis bifunctional protein HisIE GO:0000105|GO:0004635|GO:0004636 KEGG: 00340+3.6.1.31+3.5.4.19 AM354_RS06210 a301284943d54c2af8eacffc101e1882 206 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 115 197 4.7E-30 T 29-03-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 AM354_RS05395 12e4f6b4b30e642b321b43dbca6ceb6a 396 Gene3D G3DSA:2.30.130.10 4 72 6.9E-27 T 29-03-2018 IPR002478 PUA domain GO:0003723 AM354_RS05395 12e4f6b4b30e642b321b43dbca6ceb6a 396 SUPERFAMILY SSF88697 4 72 7.62E-17 T 29-03-2018 IPR015947 PUA-like domain AM354_RS05395 12e4f6b4b30e642b321b43dbca6ceb6a 396 Hamap MF_01857 Ribosomal RNA large subunit methyltransferase I [rlmI]. 1 396 68.73 T 29-03-2018 IPR023542 rRNA large subunit methyltransferase I GO:0008649 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AM354_RS05395 12e4f6b4b30e642b321b43dbca6ceb6a 396 SUPERFAMILY SSF53335 79 392 1.79E-71 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS05395 12e4f6b4b30e642b321b43dbca6ceb6a 396 Gene3D G3DSA:3.40.50.150 182 396 1.1E-35 T 29-03-2018 AM354_RS05395 12e4f6b4b30e642b321b43dbca6ceb6a 396 Gene3D G3DSA:3.30.750.80 74 180 6.8E-31 T 29-03-2018 AM354_RS05395 12e4f6b4b30e642b321b43dbca6ceb6a 396 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 180 371 7.9E-29 T 29-03-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 AM354_RS05395 12e4f6b4b30e642b321b43dbca6ceb6a 396 SMART SM00359 3 88 4.0E-16 T 29-03-2018 IPR002478 PUA domain GO:0003723 AM354_RS10480 dff3cee585ae7e82d8caf6a13ff74634 145 SUPERFAMILY SSF54523 7 115 2.35E-22 T 29-03-2018 AM354_RS10480 dff3cee585ae7e82d8caf6a13ff74634 145 Gene3D G3DSA:3.30.700.10 7 142 1.5E-26 T 29-03-2018 AM354_RS10480 dff3cee585ae7e82d8caf6a13ff74634 145 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 27 1.1E-10 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site AM354_RS10480 dff3cee585ae7e82d8caf6a13ff74634 145 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site AM354_RS10480 dff3cee585ae7e82d8caf6a13ff74634 145 Pfam PF07963 Prokaryotic N-terminal methylation motif 3 25 1.2E-9 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site AM354_RS10480 dff3cee585ae7e82d8caf6a13ff74634 145 Pfam PF00114 Pilin (bacterial filament) 36 120 2.0E-5 T 29-03-2018 IPR001082 Fimbrial protein pilin GO:0007155|GO:0009289 AM354_RS24225 a90fbe804ad30cf196240c54c82d51e7 396 PRINTS PR00095 Anthranilate synthase component I signature 230 243 8.8E-5 T 29-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AM354_RS24225 a90fbe804ad30cf196240c54c82d51e7 396 PRINTS PR00095 Anthranilate synthase component I signature 244 257 8.8E-5 T 29-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AM354_RS24225 a90fbe804ad30cf196240c54c82d51e7 396 PRINTS PR00095 Anthranilate synthase component I signature 323 337 8.8E-5 T 29-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AM354_RS24225 a90fbe804ad30cf196240c54c82d51e7 396 PRINTS PR00095 Anthranilate synthase component I signature 338 352 8.8E-5 T 29-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AM354_RS24225 a90fbe804ad30cf196240c54c82d51e7 396 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 108 388 1.1E-91 T 29-03-2018 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 AM354_RS24225 a90fbe804ad30cf196240c54c82d51e7 396 SUPERFAMILY SSF56322 52 391 1.83E-96 T 29-03-2018 IPR005801 ADC synthase GO:0009058 AM354_RS24225 a90fbe804ad30cf196240c54c82d51e7 396 Gene3D G3DSA:3.60.120.10 3 392 1.2E-103 T 29-03-2018 IPR005801 ADC synthase GO:0009058 AM354_RS24225 a90fbe804ad30cf196240c54c82d51e7 396 Pfam PF00425 chorismate binding enzyme 127 381 7.2E-77 T 29-03-2018 IPR015890 Chorismate-utilising enzyme, C-terminal AM354_RS08585 518f2e8d9bcab562c50a8858f9ad9467 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 165 4.4E-5 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS08585 518f2e8d9bcab562c50a8858f9ad9467 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 134 4.4E-5 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS08585 518f2e8d9bcab562c50a8858f9ad9467 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 73 84 4.4E-5 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS08585 518f2e8d9bcab562c50a8858f9ad9467 258 Gene3D G3DSA:3.40.50.720 2 258 1.3E-53 T 29-03-2018 AM354_RS08585 518f2e8d9bcab562c50a8858f9ad9467 258 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 133 161 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM354_RS08585 518f2e8d9bcab562c50a8858f9ad9467 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 2.8E-19 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS08585 518f2e8d9bcab562c50a8858f9ad9467 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 2.8E-19 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS08585 518f2e8d9bcab562c50a8858f9ad9467 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 2.8E-19 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS08585 518f2e8d9bcab562c50a8858f9ad9467 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 2.8E-19 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS08585 518f2e8d9bcab562c50a8858f9ad9467 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 2.8E-19 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS08585 518f2e8d9bcab562c50a8858f9ad9467 258 SUPERFAMILY SSF51735 3 255 2.17E-56 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS08585 518f2e8d9bcab562c50a8858f9ad9467 258 Pfam PF00106 short chain dehydrogenase 3 191 3.3E-43 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS08585 518f2e8d9bcab562c50a8858f9ad9467 258 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 182 0.0018 T 29-03-2018 AM354_RS23325 624aa489f86eef56d4f7ba9ac12087e9 900 Gene3D G3DSA:3.30.565.10 475 673 3.3E-24 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS23325 624aa489f86eef56d4f7ba9ac12087e9 900 SMART SM00387 562 675 6.7E-9 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS23325 624aa489f86eef56d4f7ba9ac12087e9 900 SUPERFAMILY SSF55874 504 671 2.74E-18 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS23325 624aa489f86eef56d4f7ba9ac12087e9 900 SUPERFAMILY SSF47226 799 891 8.77E-19 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM354_RS23325 624aa489f86eef56d4f7ba9ac12087e9 900 SUPERFAMILY SSF47384 435 515 2.35E-5 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS23325 624aa489f86eef56d4f7ba9ac12087e9 900 Pfam PF01627 Hpt domain 813 869 6.7E-10 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM354_RS23325 624aa489f86eef56d4f7ba9ac12087e9 900 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 562 672 3.3E-14 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS23325 624aa489f86eef56d4f7ba9ac12087e9 900 Pfam PF16359 RcsD-ABL domain 684 784 5.6E-39 T 29-03-2018 IPR032306 Phosphotransferase RcsD, RcsD-ABL domain AM354_RS23325 624aa489f86eef56d4f7ba9ac12087e9 900 Hamap MF_00980 Phosphotransferase RcsD [rcsD]. 9 892 26.201 T 29-03-2018 IPR030861 Phosphotransferase RcsD GO:0000160|GO:0005887|GO:0009927 AM354_RS23325 624aa489f86eef56d4f7ba9ac12087e9 900 Gene3D G3DSA:1.20.120.160 771 892 2.2E-15 T 29-03-2018 AM354_RS08040 9f6b38014b8848c37c2f0fe0b15698b2 129 SUPERFAMILY SSF81343 3 129 1.24E-34 T 29-03-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM354_RS08040 9f6b38014b8848c37c2f0fe0b15698b2 129 ProSitePatterns PS01001 Succinate dehydrogenase cytochrome b subunit signature 2. 84 97 - T 29-03-2018 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM354_RS08040 9f6b38014b8848c37c2f0fe0b15698b2 129 Gene3D G3DSA:1.20.1300.10 3 129 1.2E-24 T 29-03-2018 AM354_RS08040 9f6b38014b8848c37c2f0fe0b15698b2 129 PIRSF PIRSF000178 2 129 5.2E-32 T 29-03-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM354_RS08040 9f6b38014b8848c37c2f0fe0b15698b2 129 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 7 126 6.5E-40 T 29-03-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM354_RS08040 9f6b38014b8848c37c2f0fe0b15698b2 129 ProSitePatterns PS01000 Succinate dehydrogenase cytochrome b subunit signature 1. 9 33 - T 29-03-2018 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM354_RS08040 9f6b38014b8848c37c2f0fe0b15698b2 129 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 6 123 1.6E-30 T 29-03-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM354_RS19955 3b6f85deee940e594f12b455be130ba4 394 Hamap MF_01585 Lysophospholipid transporter LplT [lplT]. 1 394 40.383 T 29-03-2018 IPR023727 Lysophospholipid transporter LplT GO:0005886|GO:0051977|GO:0051978 AM354_RS19955 3b6f85deee940e594f12b455be130ba4 394 Pfam PF07690 Major Facilitator Superfamily 18 350 1.4E-17 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS19955 3b6f85deee940e594f12b455be130ba4 394 SUPERFAMILY SSF103473 13 390 1.57E-24 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS19955 3b6f85deee940e594f12b455be130ba4 394 Gene3D G3DSA:1.20.1250.20 1 187 8.3E-14 T 29-03-2018 AM354_RS19955 3b6f85deee940e594f12b455be130ba4 394 Gene3D G3DSA:1.20.1250.20 200 394 3.1E-6 T 29-03-2018 AM354_RS23115 e19c7c65364a2e6db3a25be68d71382e 404 Gene3D G3DSA:3.90.1150.10 281 404 7.2E-24 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS23115 e19c7c65364a2e6db3a25be68d71382e 404 Gene3D G3DSA:3.40.640.10 53 280 2.4E-49 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS23115 e19c7c65364a2e6db3a25be68d71382e 404 Pfam PF00155 Aminotransferase class I and II 58 388 1.4E-48 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM354_RS23115 e19c7c65364a2e6db3a25be68d71382e 404 SUPERFAMILY SSF53383 7 402 8.16E-97 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS21730 37cf44bee6283547eb5f159b41a08a4d 152 Pfam PF08816 Inhibitor of vertebrate lysozyme (Ivy) 35 150 5.7E-49 T 29-03-2018 AM354_RS21730 37cf44bee6283547eb5f159b41a08a4d 152 SUPERFAMILY SSF89872 28 152 1.31E-47 T 29-03-2018 IPR014453 Inhibitor of vertebrate lysozyme GO:0042597|GO:0043086 AM354_RS21730 37cf44bee6283547eb5f159b41a08a4d 152 PIRSF PIRSF009103 3 152 9.8E-54 T 29-03-2018 IPR014453 Inhibitor of vertebrate lysozyme GO:0042597|GO:0043086 AM354_RS21730 37cf44bee6283547eb5f159b41a08a4d 152 Gene3D G3DSA:3.40.1420.10 28 145 6.8E-44 T 29-03-2018 AM354_RS15240 91d7fa9f81dcd9775c3b68b3d23ce9d2 1024 SUPERFAMILY SSF52777 608 784 8.15E-21 T 29-03-2018 AM354_RS15240 91d7fa9f81dcd9775c3b68b3d23ce9d2 1024 SUPERFAMILY SSF52777 791 1022 1.78E-32 T 29-03-2018 AM354_RS15240 91d7fa9f81dcd9775c3b68b3d23ce9d2 1024 Gene3D G3DSA:3.30.300.30 405 526 4.1E-27 T 29-03-2018 AM354_RS15240 91d7fa9f81dcd9775c3b68b3d23ce9d2 1024 Pfam PF13193 AMP-binding enzyme C-terminal domain 418 493 1.6E-6 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain AM354_RS15240 91d7fa9f81dcd9775c3b68b3d23ce9d2 1024 Pfam PF00550 Phosphopantetheine attachment site 523 579 1.2E-6 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS15240 91d7fa9f81dcd9775c3b68b3d23ce9d2 1024 SUPERFAMILY SSF47336 515 581 7.85E-13 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS15240 91d7fa9f81dcd9775c3b68b3d23ce9d2 1024 Gene3D G3DSA:1.10.1200.10 527 583 1.1E-13 T 29-03-2018 AM354_RS15240 91d7fa9f81dcd9775c3b68b3d23ce9d2 1024 Gene3D G3DSA:3.40.50.980 156 313 2.4E-35 T 29-03-2018 AM354_RS15240 91d7fa9f81dcd9775c3b68b3d23ce9d2 1024 Pfam PF00501 AMP-binding enzyme 14 409 1.7E-75 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM354_RS15240 91d7fa9f81dcd9775c3b68b3d23ce9d2 1024 SUPERFAMILY SSF56801 9 533 2.22E-120 T 29-03-2018 AM354_RS15240 91d7fa9f81dcd9775c3b68b3d23ce9d2 1024 Pfam PF00668 Condensation domain 608 1021 1.1E-42 T 29-03-2018 IPR001242 Condensation domain AM354_RS15240 91d7fa9f81dcd9775c3b68b3d23ce9d2 1024 Gene3D G3DSA:3.40.50.980 6 155 4.7E-32 T 29-03-2018 AM354_RS15240 91d7fa9f81dcd9775c3b68b3d23ce9d2 1024 Gene3D G3DSA:2.30.38.10 320 403 9.1E-17 T 29-03-2018 AM354_RS15240 91d7fa9f81dcd9775c3b68b3d23ce9d2 1024 ProSitePatterns PS00455 Putative AMP-binding domain signature. 154 165 - T 29-03-2018 IPR020845 AMP-binding, conserved site AM354_RS15240 91d7fa9f81dcd9775c3b68b3d23ce9d2 1024 Gene3D G3DSA:3.30.559.10 593 810 4.5E-18 T 29-03-2018 AM354_RS10750 dd33b1ceb706f6ec769b7da58bda8c61 330 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 34 321 6.3E-108 T 29-03-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 AM354_RS10750 dd33b1ceb706f6ec769b7da58bda8c61 330 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 3 325 36.704 T 29-03-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 AM354_RS10750 dd33b1ceb706f6ec769b7da58bda8c61 330 Gene3D G3DSA:3.40.718.10 1 330 8.7E-132 T 29-03-2018 AM354_RS10750 dd33b1ceb706f6ec769b7da58bda8c61 330 SUPERFAMILY SSF53659 5 327 4.32E-118 T 29-03-2018 AM354_RS10750 dd33b1ceb706f6ec769b7da58bda8c61 330 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 6 324 3.7E-130 T 29-03-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 AM354_RS19950 c35968000afccd860f6b968f52bdad2a 718 Gene3D G3DSA:2.30.38.10 527 612 2.6E-13 T 29-03-2018 AM354_RS19950 c35968000afccd860f6b968f52bdad2a 718 Pfam PF01553 Acyltransferase 16 137 7.6E-15 T 29-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AM354_RS19950 c35968000afccd860f6b968f52bdad2a 718 SUPERFAMILY SSF56801 191 713 3.92E-94 T 29-03-2018 AM354_RS19950 c35968000afccd860f6b968f52bdad2a 718 Gene3D G3DSA:3.40.50.980 376 526 2.1E-43 T 29-03-2018 AM354_RS19950 c35968000afccd860f6b968f52bdad2a 718 Pfam PF00501 AMP-binding enzyme 232 619 4.0E-65 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM354_RS19950 c35968000afccd860f6b968f52bdad2a 718 SUPERFAMILY SSF69593 6 171 3.01E-21 T 29-03-2018 AM354_RS19950 c35968000afccd860f6b968f52bdad2a 718 Gene3D G3DSA:3.40.1130.10 4 207 5.3E-24 T 29-03-2018 AM354_RS19950 c35968000afccd860f6b968f52bdad2a 718 Hamap MF_01162 Bifunctional protein Aas [aas]. 1 717 53.138 T 29-03-2018 IPR023775 Bifunctional protein Aas GO:0006631|GO:0008654|GO:0008779|GO:0008922 KEGG: 00071+6.2.1.20|KEGG: 00564+2.3.1.40|MetaCyc: PWY-6622|MetaCyc: PWY-7032 AM354_RS19950 c35968000afccd860f6b968f52bdad2a 718 SMART SM00563 30 140 3.3E-25 T 29-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AM354_RS19950 c35968000afccd860f6b968f52bdad2a 718 Gene3D G3DSA:3.40.50.980 208 375 1.3E-20 T 29-03-2018 AM354_RS19950 c35968000afccd860f6b968f52bdad2a 718 ProSitePatterns PS00455 Putative AMP-binding domain signature. 370 381 - T 29-03-2018 IPR020845 AMP-binding, conserved site AM354_RS19950 c35968000afccd860f6b968f52bdad2a 718 Gene3D G3DSA:3.30.300.30 617 715 1.4E-6 T 29-03-2018 AM354_RS12100 81cfd86d6437533cd5f5bf9958a84a7d 85 Gene3D G3DSA:2.40.50.100 20 84 6.7E-31 T 29-03-2018 AM354_RS12100 81cfd86d6437533cd5f5bf9958a84a7d 85 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 29-03-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS12100 81cfd86d6437533cd5f5bf9958a84a7d 85 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 82 2.6E-43 T 29-03-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS12100 81cfd86d6437533cd5f5bf9958a84a7d 85 PRINTS PR00063 Ribosomal protein L27 signature 29 53 1.1E-38 T 29-03-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS12100 81cfd86d6437533cd5f5bf9958a84a7d 85 PRINTS PR00063 Ribosomal protein L27 signature 54 78 1.1E-38 T 29-03-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS12100 81cfd86d6437533cd5f5bf9958a84a7d 85 PRINTS PR00063 Ribosomal protein L27 signature 4 28 1.1E-38 T 29-03-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS12100 81cfd86d6437533cd5f5bf9958a84a7d 85 SUPERFAMILY SSF110324 2 79 3.49E-34 T 29-03-2018 AM354_RS12100 81cfd86d6437533cd5f5bf9958a84a7d 85 Pfam PF01016 Ribosomal L27 protein 2 82 4.8E-39 T 29-03-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS12100 81cfd86d6437533cd5f5bf9958a84a7d 85 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 71 1.0E-17 T 29-03-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS12100 81cfd86d6437533cd5f5bf9958a84a7d 85 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 85 29.053 T 29-03-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS19785 291ad3d251ac86631bda0d71b2ec1b89 449 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 33 439 5.6E-67 T 29-03-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 AM354_RS19785 291ad3d251ac86631bda0d71b2ec1b89 449 Gene3D G3DSA:1.20.1600.10 10 440 1.5E-68 T 29-03-2018 AM354_RS19785 291ad3d251ac86631bda0d71b2ec1b89 449 Pfam PF02321 Outer membrane efflux protein 262 438 7.2E-19 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 AM354_RS19785 291ad3d251ac86631bda0d71b2ec1b89 449 Pfam PF02321 Outer membrane efflux protein 59 233 7.6E-20 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 AM354_RS19785 291ad3d251ac86631bda0d71b2ec1b89 449 SUPERFAMILY SSF56954 14 439 6.41E-77 T 29-03-2018 AM354_RS22540 59d7eed57eb0cfbdbff7757e1eac99e4 553 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 6 178 2.1E-34 T 29-03-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AM354_RS22540 59d7eed57eb0cfbdbff7757e1eac99e4 553 SUPERFAMILY SSF52467 167 334 1.54E-29 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM354_RS22540 59d7eed57eb0cfbdbff7757e1eac99e4 553 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 394 528 2.9E-18 T 29-03-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AM354_RS22540 59d7eed57eb0cfbdbff7757e1eac99e4 553 SUPERFAMILY SSF52518 356 540 1.4E-44 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS22540 59d7eed57eb0cfbdbff7757e1eac99e4 553 Gene3D G3DSA:3.40.50.1220 196 341 3.5E-25 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM354_RS22540 59d7eed57eb0cfbdbff7757e1eac99e4 553 Gene3D G3DSA:3.40.50.970 1 195 2.0E-47 T 29-03-2018 AM354_RS22540 59d7eed57eb0cfbdbff7757e1eac99e4 553 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 199 324 1.0E-17 T 29-03-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AM354_RS22540 59d7eed57eb0cfbdbff7757e1eac99e4 553 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 418 437 - T 29-03-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 AM354_RS22540 59d7eed57eb0cfbdbff7757e1eac99e4 553 PIRSF PIRSF036565 1 552 2.2E-202 T 29-03-2018 IPR012110 Thiamine pyrophosphate (TPP)-dependent enzyme GO:0016831 AM354_RS22540 59d7eed57eb0cfbdbff7757e1eac99e4 553 Gene3D G3DSA:3.40.50.970 342 544 8.0E-37 T 29-03-2018 AM354_RS22540 59d7eed57eb0cfbdbff7757e1eac99e4 553 SUPERFAMILY SSF52518 5 184 3.78E-44 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS13320 4f3293c50c9f2bc3219641e695f9cf15 361 Gene3D G3DSA:3.40.50.2000 182 338 4.7E-6 T 29-03-2018 AM354_RS13320 4f3293c50c9f2bc3219641e695f9cf15 361 Pfam PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 1 357 2.4E-183 T 29-03-2018 IPR009993 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase GO:0008417|GO:0009246|GO:0036065 AM354_RS13320 4f3293c50c9f2bc3219641e695f9cf15 361 Hamap MF_01002 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [wecF]. 1 361 67.864 T 29-03-2018 IPR009993 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase GO:0008417|GO:0009246|GO:0036065 AM354_RS22580 84147dcfa7414f7d0e2d84d7346fce7a 244 Gene3D G3DSA:2.20.25.10 206 243 2.9E-16 T 29-03-2018 AM354_RS22580 84147dcfa7414f7d0e2d84d7346fce7a 244 SUPERFAMILY SSF52172 2 124 2.13E-25 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS22580 84147dcfa7414f7d0e2d84d7346fce7a 244 SMART SM00448 1 112 5.8E-22 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS22580 84147dcfa7414f7d0e2d84d7346fce7a 244 Pfam PF00072 Response regulator receiver domain 4 112 2.2E-23 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS22580 84147dcfa7414f7d0e2d84d7346fce7a 244 Pfam PF04397 LytTr DNA-binding domain 146 242 4.4E-30 T 29-03-2018 IPR007492 LytTR DNA-binding domain GO:0003677 AM354_RS22580 84147dcfa7414f7d0e2d84d7346fce7a 244 Gene3D G3DSA:2.40.50.40 135 204 1.8E-16 T 29-03-2018 AM354_RS22580 84147dcfa7414f7d0e2d84d7346fce7a 244 SMART SM00850 145 243 2.3E-35 T 29-03-2018 IPR007492 LytTR DNA-binding domain GO:0003677 AM354_RS22580 84147dcfa7414f7d0e2d84d7346fce7a 244 Gene3D G3DSA:3.40.50.2300 1 130 1.5E-24 T 29-03-2018 AM354_RS19110 57e491e1a8e628251ee59c3e8fa8122c 302 SUPERFAMILY SSF53807 38 296 1.49E-55 T 29-03-2018 AM354_RS19110 57e491e1a8e628251ee59c3e8fa8122c 302 Gene3D G3DSA:3.40.50.1980 146 300 6.4E-26 T 29-03-2018 AM354_RS19110 57e491e1a8e628251ee59c3e8fa8122c 302 Gene3D G3DSA:3.40.50.1980 29 145 5.4E-16 T 29-03-2018 AM354_RS19110 57e491e1a8e628251ee59c3e8fa8122c 302 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 60 78 5.4E-40 T 29-03-2018 IPR008091 Ferrichrome-binding periplasmic protein AM354_RS19110 57e491e1a8e628251ee59c3e8fa8122c 302 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 190 205 5.4E-40 T 29-03-2018 IPR008091 Ferrichrome-binding periplasmic protein AM354_RS19110 57e491e1a8e628251ee59c3e8fa8122c 302 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 214 232 5.4E-40 T 29-03-2018 IPR008091 Ferrichrome-binding periplasmic protein AM354_RS19110 57e491e1a8e628251ee59c3e8fa8122c 302 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 242 259 5.4E-40 T 29-03-2018 IPR008091 Ferrichrome-binding periplasmic protein AM354_RS19110 57e491e1a8e628251ee59c3e8fa8122c 302 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 279 292 5.4E-40 T 29-03-2018 IPR008091 Ferrichrome-binding periplasmic protein AM354_RS19110 57e491e1a8e628251ee59c3e8fa8122c 302 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 91 106 5.4E-40 T 29-03-2018 IPR008091 Ferrichrome-binding periplasmic protein AM354_RS19110 57e491e1a8e628251ee59c3e8fa8122c 302 Pfam PF01497 Periplasmic binding protein 43 275 2.5E-38 T 29-03-2018 IPR002491 ABC transporter periplasmic binding domain GO:0005488 AM354_RS15595 e7cfbf1b3fdc1a90726b3b45c1b1de32 771 TIGRFAM TIGR00437 feoB: ferrous iron transport protein B 10 688 1.3E-224 T 29-03-2018 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 AM354_RS15595 e7cfbf1b3fdc1a90726b3b45c1b1de32 771 Pfam PF07664 Ferrous iron transport protein B C terminus 456 508 1.6E-21 T 29-03-2018 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 AM354_RS15595 e7cfbf1b3fdc1a90726b3b45c1b1de32 771 Pfam PF02421 Ferrous iron transport protein B 5 162 1.0E-62 T 29-03-2018 IPR030389 FeoB-type guanine nucleotide-binding (G) domain GO:0005525 AM354_RS15595 e7cfbf1b3fdc1a90726b3b45c1b1de32 771 Gene3D G3DSA:3.40.50.300 2 289 1.1E-33 T 29-03-2018 AM354_RS15595 e7cfbf1b3fdc1a90726b3b45c1b1de32 771 SUPERFAMILY SSF52540 4 170 3.97E-39 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS15595 e7cfbf1b3fdc1a90726b3b45c1b1de32 771 Pfam PF07670 Nucleoside recognition 354 444 8.8E-13 T 29-03-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 AM354_RS15595 e7cfbf1b3fdc1a90726b3b45c1b1de32 771 Pfam PF07670 Nucleoside recognition 513 690 2.6E-36 T 29-03-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 AM354_RS16400 a95e13f4ad7ac86f49e3aa4ec2c305d7 397 PRINTS PR00181 Maltose binding protein signature 152 171 9.7E-91 T 29-03-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0006810 AM354_RS16400 a95e13f4ad7ac86f49e3aa4ec2c305d7 397 PRINTS PR00181 Maltose binding protein signature 71 89 9.7E-91 T 29-03-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0006810 AM354_RS16400 a95e13f4ad7ac86f49e3aa4ec2c305d7 397 PRINTS PR00181 Maltose binding protein signature 172 191 9.7E-91 T 29-03-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0006810 AM354_RS16400 a95e13f4ad7ac86f49e3aa4ec2c305d7 397 PRINTS PR00181 Maltose binding protein signature 37 55 9.7E-91 T 29-03-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0006810 AM354_RS16400 a95e13f4ad7ac86f49e3aa4ec2c305d7 397 PRINTS PR00181 Maltose binding protein signature 358 377 9.7E-91 T 29-03-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0006810 AM354_RS16400 a95e13f4ad7ac86f49e3aa4ec2c305d7 397 PRINTS PR00181 Maltose binding protein signature 234 253 9.7E-91 T 29-03-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0006810 AM354_RS16400 a95e13f4ad7ac86f49e3aa4ec2c305d7 397 PRINTS PR00181 Maltose binding protein signature 131 150 9.7E-91 T 29-03-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0006810 AM354_RS16400 a95e13f4ad7ac86f49e3aa4ec2c305d7 397 PRINTS PR00181 Maltose binding protein signature 300 321 9.7E-91 T 29-03-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0006810 AM354_RS16400 a95e13f4ad7ac86f49e3aa4ec2c305d7 397 SUPERFAMILY SSF53850 30 396 6.21E-95 T 29-03-2018 AM354_RS16400 a95e13f4ad7ac86f49e3aa4ec2c305d7 397 Gene3D G3DSA:3.40.190.10 25 154 1.6E-24 T 29-03-2018 AM354_RS16400 a95e13f4ad7ac86f49e3aa4ec2c305d7 397 Pfam PF13416 Bacterial extracellular solute-binding protein 51 345 1.5E-41 T 29-03-2018 AM354_RS16400 a95e13f4ad7ac86f49e3aa4ec2c305d7 397 Gene3D G3DSA:3.40.190.10 155 397 4.8E-39 T 29-03-2018 AM354_RS12890 b3a95525a4a44061f7625125b6c0a23a 162 Gene3D G3DSA:3.30.70.940 1 101 6.1E-18 T 29-03-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AM354_RS12890 b3a95525a4a44061f7625125b6c0a23a 162 TIGRFAM TIGR01955 RfaH: transcription elongation factor/antiterminator RfaH 4 159 3.6E-62 T 29-03-2018 IPR010215 Transcription antitermination protein RfaH GO:0006355 AM354_RS12890 b3a95525a4a44061f7625125b6c0a23a 162 Hamap MF_00951 Transcription antitermination protein RfaH [rfaH]. 1 162 47.019 T 29-03-2018 IPR010215 Transcription antitermination protein RfaH GO:0006355 AM354_RS12890 b3a95525a4a44061f7625125b6c0a23a 162 Gene3D G3DSA:2.30.30.30 110 162 1.1E-4 T 29-03-2018 IPR014722 Ribosomal protein L2 domain 2 AM354_RS12890 b3a95525a4a44061f7625125b6c0a23a 162 Pfam PF02357 Transcription termination factor nusG 3 96 1.1E-17 T 29-03-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AM354_RS12890 b3a95525a4a44061f7625125b6c0a23a 162 SMART SM00739 109 136 0.0097 T 29-03-2018 IPR005824 KOW AM354_RS12890 b3a95525a4a44061f7625125b6c0a23a 162 SUPERFAMILY SSF82679 2 101 2.62E-27 T 29-03-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AM354_RS12890 b3a95525a4a44061f7625125b6c0a23a 162 SMART SM00738 1 100 8.1E-31 T 29-03-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AM354_RS14695 25e6dc82e3e79704ce0a4bc403c3a7c5 287 SUPERFAMILY SSF53681 131 283 6.1E-33 T 29-03-2018 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS14695 25e6dc82e3e79704ce0a4bc403c3a7c5 287 Gene3D G3DSA:3.40.50.1860 144 277 1.1E-27 T 29-03-2018 AM354_RS14695 25e6dc82e3e79704ce0a4bc403c3a7c5 287 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 93 101 - T 29-03-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS14695 25e6dc82e3e79704ce0a4bc403c3a7c5 287 Gene3D G3DSA:3.40.50.1860 24 143 7.4E-28 T 29-03-2018 AM354_RS14695 25e6dc82e3e79704ce0a4bc403c3a7c5 287 Pfam PF01177 Asp/Glu/Hydantoin racemase 30 239 7.4E-25 T 29-03-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS14695 25e6dc82e3e79704ce0a4bc403c3a7c5 287 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 204 214 - T 29-03-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS14695 25e6dc82e3e79704ce0a4bc403c3a7c5 287 TIGRFAM TIGR00067 glut_race: glutamate racemase 28 274 5.5E-87 T 29-03-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS14695 25e6dc82e3e79704ce0a4bc403c3a7c5 287 SUPERFAMILY SSF53681 28 129 5.43E-32 T 29-03-2018 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS14695 25e6dc82e3e79704ce0a4bc403c3a7c5 287 Hamap MF_00258 Glutamate racemase [murI]. 26 278 34.688 T 29-03-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS17575 366195e674dfd113ace83a251da9c7cd 1024 SUPERFAMILY SSF49303 622 727 9.71E-32 T 29-03-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AM354_RS17575 366195e674dfd113ace83a251da9c7cd 1024 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 336 629 1.5E-124 T 29-03-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 AM354_RS17575 366195e674dfd113ace83a251da9c7cd 1024 ProSitePatterns PS00719 Glycosyl hydrolases family 2 signature 1. 386 411 - T 29-03-2018 IPR023230 Glycoside hydrolase, family 2, conserved site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-6798695 AM354_RS17575 366195e674dfd113ace83a251da9c7cd 1024 Gene3D G3DSA:2.60.40.10 626 731 3.1E-25 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS17575 366195e674dfd113ace83a251da9c7cd 1024 Pfam PF02929 Beta galactosidase small chain 754 1019 5.8E-60 T 29-03-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AM354_RS17575 366195e674dfd113ace83a251da9c7cd 1024 Gene3D G3DSA:2.60.120.260 3 219 6.7E-68 T 29-03-2018 IPR008979 Galactose-binding domain-like AM354_RS17575 366195e674dfd113ace83a251da9c7cd 1024 Gene3D G3DSA:2.60.40.10 220 334 8.6E-21 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS17575 366195e674dfd113ace83a251da9c7cd 1024 Pfam PF16353 Domain of unknown function(DUF4981) 637 723 1.4E-17 T 29-03-2018 IPR032312 Beta-galactosidase, domain 4 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AM354_RS17575 366195e674dfd113ace83a251da9c7cd 1024 PRINTS PR00132 Glycosyl hydrolase family 2 signature 376 394 6.1E-39 T 29-03-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-6798695 AM354_RS17575 366195e674dfd113ace83a251da9c7cd 1024 PRINTS PR00132 Glycosyl hydrolase family 2 signature 448 463 6.1E-39 T 29-03-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-6798695 AM354_RS17575 366195e674dfd113ace83a251da9c7cd 1024 PRINTS PR00132 Glycosyl hydrolase family 2 signature 345 359 6.1E-39 T 29-03-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-6798695 AM354_RS17575 366195e674dfd113ace83a251da9c7cd 1024 PRINTS PR00132 Glycosyl hydrolase family 2 signature 532 547 6.1E-39 T 29-03-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-6798695 AM354_RS17575 366195e674dfd113ace83a251da9c7cd 1024 PRINTS PR00132 Glycosyl hydrolase family 2 signature 147 162 6.1E-39 T 29-03-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-6798695 AM354_RS17575 366195e674dfd113ace83a251da9c7cd 1024 SUPERFAMILY SSF49785 15 219 6.8E-70 T 29-03-2018 IPR008979 Galactose-binding domain-like AM354_RS17575 366195e674dfd113ace83a251da9c7cd 1024 SMART SM01038 749 1022 1.3E-116 T 29-03-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AM354_RS17575 366195e674dfd113ace83a251da9c7cd 1024 SUPERFAMILY SSF51445 335 625 9.94E-104 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily AM354_RS17575 366195e674dfd113ace83a251da9c7cd 1024 Pfam PF00703 Glycosyl hydrolases family 2 222 334 1.8E-15 T 29-03-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AM354_RS17575 366195e674dfd113ace83a251da9c7cd 1024 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 53 219 3.8E-72 T 29-03-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AM354_RS17575 366195e674dfd113ace83a251da9c7cd 1024 ProSitePatterns PS00608 Glycosyl hydrolases family 2 acid/base catalyst. 448 462 - T 29-03-2018 IPR023232 Glycoside hydrolase, family 2, active site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-6798695 AM354_RS17575 366195e674dfd113ace83a251da9c7cd 1024 Hamap MF_01687 Beta-galactosidase [lacZ]. 6 1024 17.682 T 29-03-2018 IPR023933 Glycoside hydrolase, family 2, beta-galactosidase GO:0016798 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AM354_RS17575 366195e674dfd113ace83a251da9c7cd 1024 SUPERFAMILY SSF49303 221 334 2.22E-27 T 29-03-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AM354_RS17575 366195e674dfd113ace83a251da9c7cd 1024 Gene3D G3DSA:3.20.20.80 335 625 2.1E-87 T 29-03-2018 AM354_RS17575 366195e674dfd113ace83a251da9c7cd 1024 Gene3D G3DSA:2.70.98.10 733 1024 1.2E-75 T 29-03-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 AM354_RS17575 366195e674dfd113ace83a251da9c7cd 1024 SUPERFAMILY SSF74650 735 1022 1.73E-95 T 29-03-2018 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 AM354_RS12850 bdff34e5fb7247f9d8a7ecd9d5e4691a 483 Pfam PF02386 Cation transport protein 37 477 6.3E-89 T 29-03-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 AM354_RS12850 bdff34e5fb7247f9d8a7ecd9d5e4691a 483 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 84 466 5.2E-124 T 29-03-2018 IPR004772 TrkH potassium transport family GO:0016021|GO:0022820|GO:0071805 AM354_RS12850 bdff34e5fb7247f9d8a7ecd9d5e4691a 483 PIRSF PIRSF006247 1 483 2.8E-181 T 29-03-2018 IPR004772 TrkH potassium transport family GO:0016021|GO:0022820|GO:0071805 AM354_RS08075 6a70221ec2a7546e5ecdb46b2afeee83 310 SMART SM00797 23 299 1.3E-150 T 29-03-2018 IPR003778 Carboxyltransferase domain, subdomain A and B AM354_RS08075 6a70221ec2a7546e5ecdb46b2afeee83 310 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 1 309 6.9E-121 T 29-03-2018 IPR003778 Carboxyltransferase domain, subdomain A and B AM354_RS08075 6a70221ec2a7546e5ecdb46b2afeee83 310 SUPERFAMILY SSF50891 173 289 3.34E-12 T 29-03-2018 IPR029000 Cyclophilin-like domain AM354_RS08075 6a70221ec2a7546e5ecdb46b2afeee83 310 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 24 282 3.4E-94 T 29-03-2018 IPR003778 Carboxyltransferase domain, subdomain A and B AM354_RS23845 32b4379f37d9173b486ee531ff7ec665 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 1.3E-13 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS23845 32b4379f37d9173b486ee531ff7ec665 303 Gene3D G3DSA:3.40.190.10 89 206 4.6E-8 T 29-03-2018 AM354_RS23845 32b4379f37d9173b486ee531ff7ec665 303 SUPERFAMILY SSF53850 94 283 5.61E-15 T 29-03-2018 AM354_RS23845 32b4379f37d9173b486ee531ff7ec665 303 SUPERFAMILY SSF46785 7 90 2.97E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS23845 32b4379f37d9173b486ee531ff7ec665 303 Pfam PF03466 LysR substrate binding domain 95 283 3.7E-12 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS23845 32b4379f37d9173b486ee531ff7ec665 303 Gene3D G3DSA:1.10.10.10 5 86 1.7E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS13070 80963740e93b8ff21faaf622ee65a575 538 Gene3D G3DSA:1.20.120.140 227 322 7.0E-22 T 29-03-2018 AM354_RS13070 80963740e93b8ff21faaf622ee65a575 538 Gene3D G3DSA:3.40.50.300 327 536 5.6E-40 T 29-03-2018 AM354_RS13070 80963740e93b8ff21faaf622ee65a575 538 SMART SM00382 333 524 3.2E-9 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS13070 80963740e93b8ff21faaf622ee65a575 538 SMART SM00962 334 535 1.3E-124 T 29-03-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AM354_RS13070 80963740e93b8ff21faaf622ee65a575 538 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 263 534 1.6E-114 T 29-03-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 AM354_RS13070 80963740e93b8ff21faaf622ee65a575 538 SMART SM00963 240 320 1.6E-24 T 29-03-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AM354_RS13070 80963740e93b8ff21faaf622ee65a575 538 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 263 535 64.899 T 29-03-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 AM354_RS13070 80963740e93b8ff21faaf622ee65a575 538 SUPERFAMILY SSF47364 235 314 7.85E-22 T 29-03-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AM354_RS13070 80963740e93b8ff21faaf622ee65a575 538 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 508 521 - T 29-03-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AM354_RS13070 80963740e93b8ff21faaf622ee65a575 538 Pfam PF02881 SRP54-type protein, helical bundle domain 251 316 9.7E-13 T 29-03-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AM354_RS13070 80963740e93b8ff21faaf622ee65a575 538 Pfam PF00448 SRP54-type protein, GTPase domain 335 534 5.8E-78 T 29-03-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AM354_RS13070 80963740e93b8ff21faaf622ee65a575 538 SUPERFAMILY SSF52540 331 534 7.01E-53 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS16155 13bbd20b2290c2c22669e88f441842c2 138 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 6 20 3.7E-14 T 29-03-2018 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 AM354_RS16155 13bbd20b2290c2c22669e88f441842c2 138 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 84 92 3.7E-14 T 29-03-2018 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 AM354_RS16155 13bbd20b2290c2c22669e88f441842c2 138 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 93 102 3.7E-14 T 29-03-2018 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 AM354_RS16155 13bbd20b2290c2c22669e88f441842c2 138 SUPERFAMILY SSF81330 12 127 4.71E-37 T 29-03-2018 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 AM354_RS16155 13bbd20b2290c2c22669e88f441842c2 138 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 3 134 30.593 T 29-03-2018 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 AM354_RS16155 13bbd20b2290c2c22669e88f441842c2 138 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 3 130 2.0E-47 T 29-03-2018 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 AM354_RS16155 13bbd20b2290c2c22669e88f441842c2 138 Gene3D G3DSA:1.20.5.220 118 133 9.4E-4 T 29-03-2018 AM354_RS16155 13bbd20b2290c2c22669e88f441842c2 138 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 3 133 2.5E-57 T 29-03-2018 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 AM354_RS16155 13bbd20b2290c2c22669e88f441842c2 138 ProSitePatterns PS01327 Large-conductance mechanosensitive channels mscL family signature. 13 26 - T 29-03-2018 IPR019823 Large-conductance mechanosensitive channel, conserved site AM354_RS00880 e6aa60b62f561e4716493426c78d149f 253 SUPERFAMILY SSF51735 10 241 2.86E-62 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS00880 e6aa60b62f561e4716493426c78d149f 253 Pfam PF00106 short chain dehydrogenase 14 209 2.7E-50 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS00880 e6aa60b62f561e4716493426c78d149f 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 152 180 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM354_RS00880 e6aa60b62f561e4716493426c78d149f 253 Gene3D G3DSA:3.40.50.720 9 173 2.8E-44 T 29-03-2018 AM354_RS00880 e6aa60b62f561e4716493426c78d149f 253 Gene3D G3DSA:3.40.50.720 174 248 3.3E-13 T 29-03-2018 AM354_RS00880 e6aa60b62f561e4716493426c78d149f 253 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 13 199 0.0035 T 29-03-2018 AM354_RS00880 e6aa60b62f561e4716493426c78d149f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 184 5.2E-23 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS00880 e6aa60b62f561e4716493426c78d149f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 5.2E-23 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS00880 e6aa60b62f561e4716493426c78d149f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 186 203 5.2E-23 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS00880 e6aa60b62f561e4716493426c78d149f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 14 31 5.2E-23 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS00880 e6aa60b62f561e4716493426c78d149f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 91 102 5.2E-23 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS00880 e6aa60b62f561e4716493426c78d149f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 155 5.2E-23 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS20395 bee2e8c312e79607c95520a32dc47bfb 882 Gene3D G3DSA:3.40.50.720 5 121 2.8E-30 T 29-03-2018 AM354_RS20395 bee2e8c312e79607c95520a32dc47bfb 882 SUPERFAMILY SSF51735 2 135 1.18E-31 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS20395 bee2e8c312e79607c95520a32dc47bfb 882 Pfam PF00583 Acetyltransferase (GNAT) family 761 859 8.6E-12 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS20395 bee2e8c312e79607c95520a32dc47bfb 882 SUPERFAMILY SSF52210 125 286 5.36E-35 T 29-03-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AM354_RS20395 bee2e8c312e79607c95520a32dc47bfb 882 Gene3D G3DSA:3.40.630.30 716 882 1.8E-27 T 29-03-2018 AM354_RS20395 bee2e8c312e79607c95520a32dc47bfb 882 Gene3D G3DSA:3.40.50.261 122 284 2.1E-37 T 29-03-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AM354_RS20395 bee2e8c312e79607c95520a32dc47bfb 882 SUPERFAMILY SSF52210 287 447 4.19E-38 T 29-03-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AM354_RS20395 bee2e8c312e79607c95520a32dc47bfb 882 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 147 280 1.1E-45 T 29-03-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain AM354_RS20395 bee2e8c312e79607c95520a32dc47bfb 882 Pfam PF13380 CoA binding domain 13 129 4.4E-21 T 29-03-2018 IPR003781 CoA-binding GO:0048037 AM354_RS20395 bee2e8c312e79607c95520a32dc47bfb 882 SUPERFAMILY SSF56059 481 690 5.5E-28 T 29-03-2018 AM354_RS20395 bee2e8c312e79607c95520a32dc47bfb 882 Pfam PF13549 ATP-grasp domain 472 694 2.2E-74 T 29-03-2018 AM354_RS20395 bee2e8c312e79607c95520a32dc47bfb 882 Gene3D G3DSA:3.30.1490.20 500 561 1.9E-27 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AM354_RS20395 bee2e8c312e79607c95520a32dc47bfb 882 Gene3D G3DSA:3.30.470.20 562 705 4.2E-23 T 29-03-2018 AM354_RS20395 bee2e8c312e79607c95520a32dc47bfb 882 SUPERFAMILY SSF55729 614 678 1.49E-25 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS20395 bee2e8c312e79607c95520a32dc47bfb 882 SUPERFAMILY SSF55729 723 861 1.49E-25 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS20395 bee2e8c312e79607c95520a32dc47bfb 882 Gene3D G3DSA:3.40.50.261 285 452 1.4E-35 T 29-03-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AM354_RS20395 bee2e8c312e79607c95520a32dc47bfb 882 SMART SM00881 9 104 1.2E-24 T 29-03-2018 IPR003781 CoA-binding GO:0048037 AM354_RS13965 22fbb79f2fe07a55c344ddd36d091f99 318 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 18 311 9.6E-94 T 29-03-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 AM354_RS13965 22fbb79f2fe07a55c344ddd36d091f99 318 SUPERFAMILY SSF161098 29 304 8.97E-34 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS13965 22fbb79f2fe07a55c344ddd36d091f99 318 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 308 5.8E-19 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS13965 22fbb79f2fe07a55c344ddd36d091f99 318 Gene3D G3DSA:1.10.3720.10 11 306 5.5E-32 T 29-03-2018 AM354_RS18510 3b27b10ddbcb0993db806be5e4d21cd2 204 SUPERFAMILY SSF53041 1 142 8.37E-41 T 29-03-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AM354_RS18510 3b27b10ddbcb0993db806be5e4d21cd2 204 SMART SM00857 2 143 2.3E-53 T 29-03-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AM354_RS18510 3b27b10ddbcb0993db806be5e4d21cd2 204 Gene3D G3DSA:1.20.5.40 112 141 2.8E-17 T 29-03-2018 AM354_RS18510 3b27b10ddbcb0993db806be5e4d21cd2 204 Pfam PF00239 Resolvase, N terminal domain 3 143 1.0E-41 T 29-03-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AM354_RS18510 3b27b10ddbcb0993db806be5e4d21cd2 204 Gene3D G3DSA:3.40.50.1390 1 111 1.9E-29 T 29-03-2018 AM354_RS18510 3b27b10ddbcb0993db806be5e4d21cd2 204 SUPERFAMILY SSF46689 145 187 1.33E-5 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS18510 3b27b10ddbcb0993db806be5e4d21cd2 204 ProSitePatterns PS00398 Site-specific recombinases signature 2. 59 71 - T 29-03-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 AM354_RS18510 3b27b10ddbcb0993db806be5e4d21cd2 204 Gene3D G3DSA:1.10.10.60 145 195 3.9E-7 T 29-03-2018 AM354_RS11840 23a98fcef9e85f71599b8cf992b9d6bc 262 Gene3D G3DSA:3.40.50.300 8 262 4.8E-58 T 29-03-2018 AM354_RS11840 23a98fcef9e85f71599b8cf992b9d6bc 262 Pfam PF00005 ABC transporter 28 184 1.2E-29 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS11840 23a98fcef9e85f71599b8cf992b9d6bc 262 SUPERFAMILY SSF52540 6 259 3.12E-56 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS11840 23a98fcef9e85f71599b8cf992b9d6bc 262 SMART SM00382 36 234 9.3E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS11840 23a98fcef9e85f71599b8cf992b9d6bc 262 TIGRFAM TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK 10 261 3.1E-119 T 29-03-2018 IPR012700 Phosphonate C-P lyase system, PhnK AM354_RS11840 23a98fcef9e85f71599b8cf992b9d6bc 262 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS11840 23a98fcef9e85f71599b8cf992b9d6bc 262 PIRSF PIRSF037116 1 262 3.9E-141 T 29-03-2018 IPR012700 Phosphonate C-P lyase system, PhnK AM354_RS24175 e6a4ca4003e65d94ba17adb2577d967c 102 ProDom PD015389 LYASE CITRATE ACYL CARRIER GAMMA CHAIN CITD PRECURSOR SIGNAL DIRECT 1 80 3.0E-24 T 29-03-2018 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 AM354_RS24175 e6a4ca4003e65d94ba17adb2577d967c 102 Pfam PF06857 Malonate decarboxylase delta subunit (MdcD) 5 86 4.8E-29 T 29-03-2018 IPR023439 Malonate decarboxylase/citrate lyase acyl carrier protein AM354_RS24175 e6a4ca4003e65d94ba17adb2577d967c 102 PIRSF PIRSF002736 1 97 3.4E-37 T 29-03-2018 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 AM354_RS24175 e6a4ca4003e65d94ba17adb2577d967c 102 TIGRFAM TIGR01608 citD: citrate lyase acyl carrier protein 1 94 2.5E-30 T 29-03-2018 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 AM354_RS24175 e6a4ca4003e65d94ba17adb2577d967c 102 Hamap MF_00805 Citrate lyase acyl carrier protein [citD]. 1 97 25.867 T 29-03-2018 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 AM354_RS25045 83997bdae526fc28f62c3a6d844a2d3c 257 Pfam PF13672 Protein phosphatase 2C 8 198 1.8E-14 T 29-03-2018 AM354_RS25045 83997bdae526fc28f62c3a6d844a2d3c 257 SUPERFAMILY SSF81606 1 235 3.01E-46 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AM354_RS25045 83997bdae526fc28f62c3a6d844a2d3c 257 SMART SM00331 1 235 9.2E-5 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AM354_RS25045 83997bdae526fc28f62c3a6d844a2d3c 257 Gene3D G3DSA:3.60.40.10 2 236 1.8E-35 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AM354_RS25045 83997bdae526fc28f62c3a6d844a2d3c 257 SMART SM00332 1 233 5.0E-8 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AM354_RS21645 ab52558e6997aed27412cf7f5cae864c 210 Gene3D G3DSA:1.10.10.10 120 206 1.7E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS21645 ab52558e6997aed27412cf7f5cae864c 210 SUPERFAMILY SSF52172 7 130 3.84E-17 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS21645 ab52558e6997aed27412cf7f5cae864c 210 SMART SM00448 4 118 2.3E-6 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS21645 ab52558e6997aed27412cf7f5cae864c 210 ProSitePatterns PS00622 LuxR-type HTH domain signature. 162 189 - T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS21645 ab52558e6997aed27412cf7f5cae864c 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 162 178 9.0E-13 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS21645 ab52558e6997aed27412cf7f5cae864c 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 148 162 9.0E-13 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS21645 ab52558e6997aed27412cf7f5cae864c 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 178 190 9.0E-13 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS21645 ab52558e6997aed27412cf7f5cae864c 210 SMART SM00421 145 202 3.1E-19 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS21645 ab52558e6997aed27412cf7f5cae864c 210 Pfam PF00072 Response regulator receiver domain 7 115 3.3E-15 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS21645 ab52558e6997aed27412cf7f5cae864c 210 SUPERFAMILY SSF46894 145 203 5.78E-19 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS21645 ab52558e6997aed27412cf7f5cae864c 210 Pfam PF00196 Bacterial regulatory proteins, luxR family 147 201 1.1E-19 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS21645 ab52558e6997aed27412cf7f5cae864c 210 Gene3D G3DSA:3.40.50.2300 5 119 8.6E-16 T 29-03-2018 AM354_RS14320 13065886b926d63c5e8ae9b4cedb0e4f 227 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 176 181 - T 29-03-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site AM354_RS14320 13065886b926d63c5e8ae9b4cedb0e4f 227 SUPERFAMILY SSF47781 20 90 1.02E-9 T 29-03-2018 IPR010994 RuvA domain 2-like AM354_RS14320 13065886b926d63c5e8ae9b4cedb0e4f 227 Gene3D G3DSA:3.40.140.10 102 227 9.0E-47 T 29-03-2018 AM354_RS14320 13065886b926d63c5e8ae9b4cedb0e4f 227 Hamap MF_00018 UPF0758 protein YicR [yicR]. 7 227 52.634 T 29-03-2018 IPR022820 Uncharacterised protein family UPF0758, YicR subfamily AM354_RS14320 13065886b926d63c5e8ae9b4cedb0e4f 227 Pfam PF04002 RadC-like JAB domain 108 225 2.4E-44 T 29-03-2018 IPR025657 RadC-like JAB domain AM354_RS14320 13065886b926d63c5e8ae9b4cedb0e4f 227 TIGRFAM TIGR00608 radc: DNA repair protein RadC 15 227 1.0E-82 T 29-03-2018 IPR001405 RadC protein AM354_RS07190 5343278671ed0b0fb32cbb961454d87b 310 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 32 287 3.6E-47 T 29-03-2018 AM354_RS07190 5343278671ed0b0fb32cbb961454d87b 310 TIGRFAM TIGR03431 PhnD: phosphonate ABC transporter, periplasmic phosphonate binding protein 1 306 7.3E-92 T 29-03-2018 IPR017797 Phosphonate ABC transporter, substrate-binding protein GO:0015716|GO:0043190 AM354_RS07190 5343278671ed0b0fb32cbb961454d87b 310 Gene3D G3DSA:3.40.190.10 49 139 2.0E-5 T 29-03-2018 AM354_RS07190 5343278671ed0b0fb32cbb961454d87b 310 TIGRFAM TIGR01098 3A0109s03R: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein 1 269 2.3E-77 T 29-03-2018 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein GO:0043190|GO:0055085 AM354_RS07190 5343278671ed0b0fb32cbb961454d87b 310 Gene3D G3DSA:3.40.190.10 140 301 2.1E-25 T 29-03-2018 AM354_RS07190 5343278671ed0b0fb32cbb961454d87b 310 SUPERFAMILY SSF53850 45 300 5.88E-44 T 29-03-2018 AM354_RS09790 bbba7182bc189e85fd0b38debe812169 353 SUPERFAMILY SSF56672 1 234 5.78E-92 T 29-03-2018 AM354_RS09790 bbba7182bc189e85fd0b38debe812169 353 SUPERFAMILY SSF100879 241 351 2.35E-26 T 29-03-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AM354_RS09790 bbba7182bc189e85fd0b38debe812169 353 Pfam PF11799 impB/mucB/samB family C-terminal domain 235 342 1.1E-9 T 29-03-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AM354_RS09790 bbba7182bc189e85fd0b38debe812169 353 Pfam PF00817 impB/mucB/samB family 7 154 1.4E-48 T 29-03-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AM354_RS09790 bbba7182bc189e85fd0b38debe812169 353 Pfam PF11798 IMS family HHH motif 168 196 1.1E-7 T 29-03-2018 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 AM354_RS09790 bbba7182bc189e85fd0b38debe812169 353 Gene3D G3DSA:3.30.1490.100 243 352 1.9E-28 T 29-03-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AM354_RS09790 bbba7182bc189e85fd0b38debe812169 353 Gene3D G3DSA:3.30.70.270 41 115 2.4E-23 T 29-03-2018 AM354_RS09790 bbba7182bc189e85fd0b38debe812169 353 Gene3D G3DSA:3.30.70.270 116 170 2.1E-21 T 29-03-2018 AM354_RS09790 bbba7182bc189e85fd0b38debe812169 353 Hamap MF_01113 DNA polymerase IV [dinB]. 1 350 37.544 T 29-03-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 AM354_RS09790 bbba7182bc189e85fd0b38debe812169 353 Gene3D G3DSA:1.10.150.20 171 242 2.0E-24 T 29-03-2018 AM354_RS10045 ac579a8205ded5981728bdf12287fb67 385 PIRSF PIRSF001500 1 379 3.4E-140 T 29-03-2018 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 AM354_RS10045 ac579a8205ded5981728bdf12287fb67 385 SMART SM00830 10 90 2.6E-23 T 29-03-2018 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AM354_RS10045 ac579a8205ded5981728bdf12287fb67 385 Pfam PF00800 Prephenate dehydratase 105 285 1.4E-61 T 29-03-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 AM354_RS10045 ac579a8205ded5981728bdf12287fb67 385 SUPERFAMILY SSF53850 104 290 3.69E-57 T 29-03-2018 AM354_RS10045 ac579a8205ded5981728bdf12287fb67 385 Pfam PF01817 Chorismate mutase type II 10 88 1.0E-15 T 29-03-2018 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AM354_RS10045 ac579a8205ded5981728bdf12287fb67 385 Gene3D G3DSA:3.40.190.10 110 193 5.8E-30 T 29-03-2018 AM354_RS10045 ac579a8205ded5981728bdf12287fb67 385 Gene3D G3DSA:1.20.59.10 1 109 4.1E-27 T 29-03-2018 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AM354_RS10045 ac579a8205ded5981728bdf12287fb67 385 TIGRFAM TIGR01797 CM_P_1: chorismate mutase 6 88 1.2E-33 T 29-03-2018 IPR010952 Chorismate mutase, gammaproteobacteria GO:0004106|GO:0005737|GO:0009094 KEGG: 00400+5.4.99.5+4.2.1.51|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7432|MetaCyc: PWY-7626 AM354_RS10045 ac579a8205ded5981728bdf12287fb67 385 Gene3D G3DSA:3.30.70.260 288 382 5.4E-25 T 29-03-2018 AM354_RS10045 ac579a8205ded5981728bdf12287fb67 385 SUPERFAMILY SSF55021 279 376 1.28E-22 T 29-03-2018 AM354_RS10045 ac579a8205ded5981728bdf12287fb67 385 Gene3D G3DSA:3.40.190.10 194 273 1.6E-24 T 29-03-2018 AM354_RS10045 ac579a8205ded5981728bdf12287fb67 385 ProSitePatterns PS00857 Prephenate dehydratase signature 1. 260 282 - T 29-03-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 AM354_RS10045 ac579a8205ded5981728bdf12287fb67 385 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 324 331 - T 29-03-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 AM354_RS10045 ac579a8205ded5981728bdf12287fb67 385 SUPERFAMILY SSF48600 5 91 1.83E-21 T 29-03-2018 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AM354_RS06105 5931a6e5568ac134a9e2d1c8ef20c18d 455 SMART SM00116 342 389 0.0039 T 29-03-2018 IPR000644 CBS domain AM354_RS06105 5931a6e5568ac134a9e2d1c8ef20c18d 455 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 32 50 - T 29-03-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 AM354_RS06105 5931a6e5568ac134a9e2d1c8ef20c18d 455 Gene3D G3DSA:3.40.50.1100 141 321 2.9E-53 T 29-03-2018 AM354_RS06105 5931a6e5568ac134a9e2d1c8ef20c18d 455 Gene3D G3DSA:3.10.580.10 329 454 2.9E-17 T 29-03-2018 AM354_RS06105 5931a6e5568ac134a9e2d1c8ef20c18d 455 Gene3D G3DSA:3.40.50.1100 40 140 5.9E-36 T 29-03-2018 AM354_RS06105 5931a6e5568ac134a9e2d1c8ef20c18d 455 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 10 301 1.6E-64 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM354_RS06105 5931a6e5568ac134a9e2d1c8ef20c18d 455 SUPERFAMILY SSF53686 4 320 9.82E-96 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM354_RS06105 5931a6e5568ac134a9e2d1c8ef20c18d 455 Pfam PF00571 CBS domain 344 388 9.2E-6 T 29-03-2018 IPR000644 CBS domain AM354_RS06105 5931a6e5568ac134a9e2d1c8ef20c18d 455 Pfam PF00571 CBS domain 400 449 2.2E-4 T 29-03-2018 IPR000644 CBS domain AM354_RS06105 5931a6e5568ac134a9e2d1c8ef20c18d 455 SUPERFAMILY SSF54631 344 452 4.67E-19 T 29-03-2018 AM354_RS02625 726cbbd957fe492cd8034f1be8a559e7 352 SUPERFAMILY SSF144052 24 341 9.94E-14 T 29-03-2018 AM354_RS04755 b8bd4d81ee4143077f3f010d383e5423 301 SUPERFAMILY SSF53850 47 285 8.69E-40 T 29-03-2018 AM354_RS04755 b8bd4d81ee4143077f3f010d383e5423 301 SMART SM00062 57 286 7.9E-19 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM354_RS04755 b8bd4d81ee4143077f3f010d383e5423 301 Gene3D G3DSA:3.40.190.10 53 154 1.3E-15 T 29-03-2018 AM354_RS04755 b8bd4d81ee4143077f3f010d383e5423 301 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 61 283 4.7E-35 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM354_RS04755 b8bd4d81ee4143077f3f010d383e5423 301 Gene3D G3DSA:3.40.190.10 155 286 8.0E-14 T 29-03-2018 AM354_RS16000 45d53e98b9ae88d2567b52bea3a6f87c 103 SUPERFAMILY SSF54999 5 101 1.26E-36 T 29-03-2018 IPR027486 Ribosomal protein S10 domain AM354_RS16000 45d53e98b9ae88d2567b52bea3a6f87c 103 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 27.353 T 29-03-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16000 45d53e98b9ae88d2567b52bea3a6f87c 103 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 1.0E-46 T 29-03-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16000 45d53e98b9ae88d2567b52bea3a6f87c 103 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 29-03-2018 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16000 45d53e98b9ae88d2567b52bea3a6f87c 103 SMART SM01403 7 101 1.0E-56 T 29-03-2018 IPR027486 Ribosomal protein S10 domain AM354_RS16000 45d53e98b9ae88d2567b52bea3a6f87c 103 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 1.2E-18 T 29-03-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16000 45d53e98b9ae88d2567b52bea3a6f87c 103 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 1.2E-18 T 29-03-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16000 45d53e98b9ae88d2567b52bea3a6f87c 103 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 1.2E-18 T 29-03-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16000 45d53e98b9ae88d2567b52bea3a6f87c 103 Pfam PF00338 Ribosomal protein S10p/S20e 7 100 2.1E-35 T 29-03-2018 IPR027486 Ribosomal protein S10 domain AM354_RS16000 45d53e98b9ae88d2567b52bea3a6f87c 103 Gene3D G3DSA:3.30.70.600 3 102 1.4E-35 T 29-03-2018 IPR027486 Ribosomal protein S10 domain AM354_RS19055 189659076e4a5d714ebb3a815d9336dd 164 Gene3D G3DSA:3.30.70.560 1 164 4.2E-58 T 29-03-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AM354_RS19055 189659076e4a5d714ebb3a815d9336dd 164 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 89 100 - T 29-03-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AM354_RS19055 189659076e4a5d714ebb3a815d9336dd 164 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 4 134 2.7E-47 T 29-03-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AM354_RS19055 189659076e4a5d714ebb3a815d9336dd 164 SUPERFAMILY SSF55083 1 159 2.09E-55 T 29-03-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AM354_RS19055 189659076e4a5d714ebb3a815d9336dd 164 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 134 9.1E-38 T 29-03-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AM354_RS15360 ad82b1a9debc38646ff8be3783e6e623 643 SUPERFAMILY SSF53613 7 331 8.11E-71 T 29-03-2018 IPR029056 Ribokinase-like AM354_RS15360 ad82b1a9debc38646ff8be3783e6e623 643 Pfam PF09863 Uncharacterized protein conserved in bacteria (DUF2090) 327 635 5.5E-142 T 29-03-2018 IPR018659 Protein of unknown function DUF2090 AM354_RS15360 ad82b1a9debc38646ff8be3783e6e623 643 Gene3D G3DSA:3.40.1190.20 8 337 2.7E-62 T 29-03-2018 IPR029056 Ribokinase-like AM354_RS15360 ad82b1a9debc38646ff8be3783e6e623 643 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 276 289 - T 29-03-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AM354_RS15360 ad82b1a9debc38646ff8be3783e6e623 643 TIGRFAM TIGR04382 myo_inos_iolC_N: 5-dehydro-2-deoxygluconokinase 7 332 4.0E-124 T 29-03-2018 IPR030830 5-Dehydro-2-deoxygluconokinase KEGG: 00562+2.7.1.92 AM354_RS15360 ad82b1a9debc38646ff8be3783e6e623 643 Gene3D G3DSA:3.20.20.70 340 641 2.2E-71 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS15360 ad82b1a9debc38646ff8be3783e6e623 643 Pfam PF00294 pfkB family carbohydrate kinase 9 324 6.0E-45 T 29-03-2018 IPR011611 Carbohydrate kinase PfkB AM354_RS13530 5a6368bfc52f18e71b7c5a55f2619551 199 SMART SM00471 27 136 4.4E-8 T 29-03-2018 IPR003607 HD/PDEase domain AM354_RS13530 5a6368bfc52f18e71b7c5a55f2619551 199 SUPERFAMILY SSF109604 4 152 1.79E-36 T 29-03-2018 AM354_RS13530 5a6368bfc52f18e71b7c5a55f2619551 199 Pfam PF13328 HD domain 9 131 1.7E-18 T 29-03-2018 IPR003607 HD/PDEase domain AM354_RS15425 74c843655151f8599cc7a0a2db8d50a7 409 Pfam PF01676 Metalloenzyme superfamily 3 391 7.4E-36 T 29-03-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 AM354_RS15425 74c843655151f8599cc7a0a2db8d50a7 409 Gene3D G3DSA:3.40.720.10 1 405 1.0E-46 T 29-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 AM354_RS15425 74c843655151f8599cc7a0a2db8d50a7 409 PIRSF PIRSF001491 1 404 2.9E-102 T 29-03-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 AM354_RS15425 74c843655151f8599cc7a0a2db8d50a7 409 SUPERFAMILY SSF53649 232 403 1.07E-55 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AM354_RS15425 74c843655151f8599cc7a0a2db8d50a7 409 SUPERFAMILY SSF53649 1 100 1.07E-55 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AM354_RS25030 0571f6dabece7d8ffd51df5bde633e2e 191 Gene3D G3DSA:3.10.450.40 32 182 4.8E-23 T 29-03-2018 AM354_RS25030 0571f6dabece7d8ffd51df5bde633e2e 191 Pfam PF04965 Gene 25-like lysozyme 63 167 8.6E-21 T 29-03-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD AM354_RS25030 0571f6dabece7d8ffd51df5bde633e2e 191 SUPERFAMILY SSF160719 69 178 4.05E-9 T 29-03-2018 AM354_RS14145 128fea2e09d0832bfcf7ffc971f9bda9 328 Hamap MF_01497 Stress response kinase A [srkA]. 4 318 45.885 T 29-03-2018 IPR032882 SrkA/RdoA protein kinase GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 AM354_RS14145 128fea2e09d0832bfcf7ffc971f9bda9 328 Pfam PF01636 Phosphotransferase enzyme family 33 262 2.3E-44 T 29-03-2018 IPR002575 Aminoglycoside phosphotransferase AM354_RS14145 128fea2e09d0832bfcf7ffc971f9bda9 328 Gene3D G3DSA:3.30.200.20 5 107 6.5E-19 T 29-03-2018 AM354_RS14145 128fea2e09d0832bfcf7ffc971f9bda9 328 Gene3D G3DSA:3.90.1200.10 111 321 2.2E-20 T 29-03-2018 AM354_RS14145 128fea2e09d0832bfcf7ffc971f9bda9 328 SUPERFAMILY SSF56112 6 327 3.79E-88 T 29-03-2018 IPR011009 Protein kinase-like domain AM354_RS12230 796e6a646b36e97c6d6c11e49eb8b7f6 150 SUPERFAMILY SSF55653 60 149 3.92E-25 T 29-03-2018 IPR020069 Ribosomal protein L9, C-terminal AM354_RS12230 796e6a646b36e97c6d6c11e49eb8b7f6 150 SUPERFAMILY SSF55658 1 57 4.01E-19 T 29-03-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal AM354_RS12230 796e6a646b36e97c6d6c11e49eb8b7f6 150 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 45 5.5E-22 T 29-03-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS12230 796e6a646b36e97c6d6c11e49eb8b7f6 150 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 149 3.2E-58 T 29-03-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS12230 796e6a646b36e97c6d6c11e49eb8b7f6 150 Gene3D G3DSA:3.40.5.10 1 49 1.1E-22 T 29-03-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS12230 796e6a646b36e97c6d6c11e49eb8b7f6 150 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 29-03-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS12230 796e6a646b36e97c6d6c11e49eb8b7f6 150 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 149 25.29 T 29-03-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS12230 796e6a646b36e97c6d6c11e49eb8b7f6 150 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 148 1.5E-24 T 29-03-2018 IPR020069 Ribosomal protein L9, C-terminal AM354_RS12230 796e6a646b36e97c6d6c11e49eb8b7f6 150 Gene3D G3DSA:3.10.430.100 63 148 6.3E-25 T 29-03-2018 IPR020069 Ribosomal protein L9, C-terminal AM354_RS12245 3dba1001d3e4400c1f48905b41a603d3 132 SUPERFAMILY SSF54995 1 103 1.44E-37 T 29-03-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS12245 3dba1001d3e4400c1f48905b41a603d3 132 Pfam PF01250 Ribosomal protein S6 3 91 6.6E-28 T 29-03-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS12245 3dba1001d3e4400c1f48905b41a603d3 132 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 94 21.897 T 29-03-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 AM354_RS12245 3dba1001d3e4400c1f48905b41a603d3 132 Gene3D G3DSA:3.30.70.60 1 100 7.3E-31 T 29-03-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 AM354_RS12245 3dba1001d3e4400c1f48905b41a603d3 132 ProSitePatterns PS01048 Ribosomal protein S6 signature. 43 52 - T 29-03-2018 IPR020815 Ribosomal protein S6, conserved site GO:0003735|GO:0005840|GO:0006412|GO:0019843 AM354_RS12245 3dba1001d3e4400c1f48905b41a603d3 132 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 94 8.4E-38 T 29-03-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS10855 2e2ad18124fe710e30ab0bcd2159bb5f 938 Gene3D G3DSA:3.30.2320.20 802 896 6.4E-25 T 29-03-2018 AM354_RS10855 2e2ad18124fe710e30ab0bcd2159bb5f 938 Pfam PF06827 Zinc finger found in FPG and IleRS 898 926 1.7E-9 T 29-03-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 AM354_RS10855 2e2ad18124fe710e30ab0bcd2159bb5f 938 Gene3D G3DSA:3.90.740.10 213 390 2.1E-57 T 29-03-2018 AM354_RS10855 2e2ad18124fe710e30ab0bcd2159bb5f 938 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 28 640 2.8E-224 T 29-03-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS10855 2e2ad18124fe710e30ab0bcd2159bb5f 938 Gene3D G3DSA:1.10.730.10 630 793 1.3E-33 T 29-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS10855 2e2ad18124fe710e30ab0bcd2159bb5f 938 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 2 929 21.376 T 29-03-2018 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 AM354_RS10855 2e2ad18124fe710e30ab0bcd2159bb5f 938 SUPERFAMILY SSF47323 652 929 5.05E-77 T 29-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS10855 2e2ad18124fe710e30ab0bcd2159bb5f 938 Gene3D G3DSA:3.40.50.620 391 629 4.5E-71 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS10855 2e2ad18124fe710e30ab0bcd2159bb5f 938 SUPERFAMILY SSF50677 204 403 4.6E-54 T 29-03-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AM354_RS10855 2e2ad18124fe710e30ab0bcd2159bb5f 938 SUPERFAMILY SSF52374 403 647 6.57E-138 T 29-03-2018 AM354_RS10855 2e2ad18124fe710e30ab0bcd2159bb5f 938 SUPERFAMILY SSF52374 3 202 6.57E-138 T 29-03-2018 AM354_RS10855 2e2ad18124fe710e30ab0bcd2159bb5f 938 Gene3D G3DSA:3.40.50.620 47 212 2.6E-37 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS10855 2e2ad18124fe710e30ab0bcd2159bb5f 938 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 238 261 2.8E-33 T 29-03-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AM354_RS10855 2e2ad18124fe710e30ab0bcd2159bb5f 938 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 401 416 2.8E-33 T 29-03-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AM354_RS10855 2e2ad18124fe710e30ab0bcd2159bb5f 938 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 526 539 2.8E-33 T 29-03-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AM354_RS10855 2e2ad18124fe710e30ab0bcd2159bb5f 938 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 51 62 2.8E-33 T 29-03-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AM354_RS10855 2e2ad18124fe710e30ab0bcd2159bb5f 938 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 561 570 2.8E-33 T 29-03-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AM354_RS10855 2e2ad18124fe710e30ab0bcd2159bb5f 938 Pfam PF08264 Anticodon-binding domain of tRNA 685 840 3.2E-28 T 29-03-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 AM354_RS10855 2e2ad18124fe710e30ab0bcd2159bb5f 938 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 15 843 1.2E-296 T 29-03-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AM354_RS10855 2e2ad18124fe710e30ab0bcd2159bb5f 938 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 58 69 - T 29-03-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS02200 bfaa74e538b82dbf372816c4a3e8553b 251 TIGRFAM TIGR02111 PQQ_syn_pqqC: coenzyme PQQ biosynthesis protein C 7 240 4.0E-118 T 29-03-2018 IPR011845 Coenzyme PQQ biosynthesis protein C GO:0018189|GO:0055114 MetaCyc: PWY-6420 AM354_RS02200 bfaa74e538b82dbf372816c4a3e8553b 251 Hamap MF_00654 Pyrroloquinoline-quinone synthase [pqqC]. 1 251 139.57 T 29-03-2018 IPR011845 Coenzyme PQQ biosynthesis protein C GO:0018189|GO:0055114 MetaCyc: PWY-6420 AM354_RS02200 bfaa74e538b82dbf372816c4a3e8553b 251 Gene3D G3DSA:1.20.910.10 1 251 2.3E-41 T 29-03-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 AM354_RS02200 bfaa74e538b82dbf372816c4a3e8553b 251 SUPERFAMILY SSF48613 5 249 4.45E-78 T 29-03-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 AM354_RS02200 bfaa74e538b82dbf372816c4a3e8553b 251 Pfam PF03070 TENA/THI-4/PQQC family 15 223 5.9E-63 T 29-03-2018 IPR004305 Thiaminase-2/PQQC AM354_RS25100 718f4c6093281d0f5fc4a5b9f64dd7bc 178 PIRSF PIRSF028301 4 178 2.2E-60 T 29-03-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 AM354_RS25100 718f4c6093281d0f5fc4a5b9f64dd7bc 178 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 14 164 2.5E-58 T 29-03-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 AM354_RS25100 718f4c6093281d0f5fc4a5b9f64dd7bc 178 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 10 164 6.0E-57 T 29-03-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 AM354_RS01980 a648832536115e41b551c6a5f1586bbc 424 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 99 113 3.8E-32 T 29-03-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AM354_RS01980 a648832536115e41b551c6a5f1586bbc 424 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 221 241 3.8E-32 T 29-03-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AM354_RS01980 a648832536115e41b551c6a5f1586bbc 424 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 179 201 3.8E-32 T 29-03-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AM354_RS01980 a648832536115e41b551c6a5f1586bbc 424 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 348 359 3.8E-32 T 29-03-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AM354_RS01980 a648832536115e41b551c6a5f1586bbc 424 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 107 120 - T 29-03-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AM354_RS01980 a648832536115e41b551c6a5f1586bbc 424 SUPERFAMILY SSF51735 188 423 2.17E-74 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS01980 a648832536115e41b551c6a5f1586bbc 424 PIRSF PIRSF000185 10 423 2.5E-159 T 29-03-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 AM354_RS01980 a648832536115e41b551c6a5f1586bbc 424 Gene3D G3DSA:3.40.50.720 188 423 1.6E-74 T 29-03-2018 AM354_RS01980 a648832536115e41b551c6a5f1586bbc 424 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 42 170 1.4E-54 T 29-03-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AM354_RS01980 a648832536115e41b551c6a5f1586bbc 424 SUPERFAMILY SSF53223 12 190 2.91E-68 T 29-03-2018 AM354_RS01980 a648832536115e41b551c6a5f1586bbc 424 Gene3D G3DSA:3.40.50.10860 40 175 1.3E-52 T 29-03-2018 AM354_RS01980 a648832536115e41b551c6a5f1586bbc 424 SMART SM00839 190 420 4.7E-91 T 29-03-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AM354_RS01980 a648832536115e41b551c6a5f1586bbc 424 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 188 420 8.2E-74 T 29-03-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AM354_RS06160 01ea82ccf88c818152feaee08aa272a1 309 Pfam PF03466 LysR substrate binding domain 96 293 1.9E-23 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS06160 01ea82ccf88c818152feaee08aa272a1 309 Gene3D G3DSA:1.10.10.10 3 90 1.9E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS06160 01ea82ccf88c818152feaee08aa272a1 309 SUPERFAMILY SSF46785 8 93 2.26E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS06160 01ea82ccf88c818152feaee08aa272a1 309 SUPERFAMILY SSF53850 110 295 1.72E-24 T 29-03-2018 AM354_RS06160 01ea82ccf88c818152feaee08aa272a1 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 69 1.5E-15 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS06160 01ea82ccf88c818152feaee08aa272a1 309 Gene3D G3DSA:3.40.190.10 190 264 0.001 T 29-03-2018 AM354_RS06160 01ea82ccf88c818152feaee08aa272a1 309 Gene3D G3DSA:3.40.190.10 95 189 2.1E-17 T 29-03-2018 AM354_RS09525 7a0b939834e1d09347a51c54933fa300 260 SUPERFAMILY SSF46785 7 62 4.5E-10 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS09525 7a0b939834e1d09347a51c54933fa300 260 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 41 59 2.1E-7 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS09525 7a0b939834e1d09347a51c54933fa300 260 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 27 41 2.1E-7 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS09525 7a0b939834e1d09347a51c54933fa300 260 Gene3D G3DSA:3.40.50.1360 76 241 2.4E-29 T 29-03-2018 AM354_RS09525 7a0b939834e1d09347a51c54933fa300 260 Pfam PF08220 DeoR-like helix-turn-helix domain 9 63 1.2E-15 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS09525 7a0b939834e1d09347a51c54933fa300 260 SUPERFAMILY SSF100950 78 233 1.59E-23 T 29-03-2018 AM354_RS09525 7a0b939834e1d09347a51c54933fa300 260 SMART SM01134 74 235 3.2E-51 T 29-03-2018 AM354_RS09525 7a0b939834e1d09347a51c54933fa300 260 Pfam PF00455 DeoR C terminal sensor domain 78 232 1.3E-38 T 29-03-2018 IPR014036 DeoR C-terminal sensor domain AM354_RS09525 7a0b939834e1d09347a51c54933fa300 260 ProSitePatterns PS00894 DeoR-type HTH domain signature. 9 43 - T 29-03-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AM354_RS09525 7a0b939834e1d09347a51c54933fa300 260 Gene3D G3DSA:1.10.10.10 2 65 1.0E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS09525 7a0b939834e1d09347a51c54933fa300 260 SMART SM00420 9 61 2.1E-13 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS08010 9c282a043c19f2d37cde4df80a377d0b 388 SUPERFAMILY SSF52210 239 385 7.2E-53 T 29-03-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AM354_RS08010 9c282a043c19f2d37cde4df80a377d0b 388 Gene3D G3DSA:3.40.50.261 240 385 2.5E-41 T 29-03-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AM354_RS08010 9c282a043c19f2d37cde4df80a377d0b 388 PIRSF PIRSF001554 1 388 1.1E-156 T 29-03-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AM354_RS08010 9c282a043c19f2d37cde4df80a377d0b 388 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 385 1.1E-181 T 29-03-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AM354_RS08010 9c282a043c19f2d37cde4df80a377d0b 388 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 282 - T 29-03-2018 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AM354_RS08010 9c282a043c19f2d37cde4df80a377d0b 388 Gene3D G3DSA:3.30.1490.20 21 95 1.2E-24 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AM354_RS08010 9c282a043c19f2d37cde4df80a377d0b 388 Pfam PF08442 ATP-grasp domain 2 203 2.2E-83 T 29-03-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AM354_RS08010 9c282a043c19f2d37cde4df80a377d0b 388 SUPERFAMILY SSF56059 1 238 6.01E-82 T 29-03-2018 AM354_RS08010 9c282a043c19f2d37cde4df80a377d0b 388 Gene3D G3DSA:3.30.470.20 96 239 5.1E-53 T 29-03-2018 AM354_RS08010 9c282a043c19f2d37cde4df80a377d0b 388 Pfam PF00549 CoA-ligase 262 382 3.7E-24 T 29-03-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AM354_RS08010 9c282a043c19f2d37cde4df80a377d0b 388 Hamap MF_00558 Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 43.445 T 29-03-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AM354_RS17585 ab90519492aec23e4db83ba868ebbcd7 330 Pfam PF13602 Zinc-binding dehydrogenase 187 326 1.1E-10 T 29-03-2018 AM354_RS17585 ab90519492aec23e4db83ba868ebbcd7 330 SMART SM00829 8 327 8.0E-11 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AM354_RS17585 ab90519492aec23e4db83ba868ebbcd7 330 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 83 2.4E-8 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AM354_RS17585 ab90519492aec23e4db83ba868ebbcd7 330 Gene3D G3DSA:3.90.180.10 2 131 7.1E-30 T 29-03-2018 AM354_RS17585 ab90519492aec23e4db83ba868ebbcd7 330 TIGRFAM TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein 7 330 1.8E-120 T 29-03-2018 IPR014182 Alcohol dehydrogenase, zinc-binding type 1 GO:0008270 AM354_RS17585 ab90519492aec23e4db83ba868ebbcd7 330 SUPERFAMILY SSF50129 9 133 1.89E-30 T 29-03-2018 IPR011032 GroES-like AM354_RS17585 ab90519492aec23e4db83ba868ebbcd7 330 SUPERFAMILY SSF51735 110 278 1.06E-28 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS17585 ab90519492aec23e4db83ba868ebbcd7 330 Gene3D G3DSA:3.40.50.720 132 294 1.1E-18 T 29-03-2018 AM354_RS13160 5bb96066f5a99150e2ee38cd5d4924af 451 TIGRFAM TIGR00881 2A0104: phosphoglycerate transporter family protein 35 417 1.5E-167 T 29-03-2018 AM354_RS13160 5bb96066f5a99150e2ee38cd5d4924af 451 SUPERFAMILY SSF103473 14 441 9.68E-84 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS13160 5bb96066f5a99150e2ee38cd5d4924af 451 PIRSF PIRSF002808 5 450 9.1E-171 T 29-03-2018 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 AM354_RS13160 5bb96066f5a99150e2ee38cd5d4924af 451 Gene3D G3DSA:1.20.1250.20 240 449 3.2E-30 T 29-03-2018 AM354_RS13160 5bb96066f5a99150e2ee38cd5d4924af 451 TIGRFAM TIGR00712 glpT: glycerol-3-phosphate transporter 1 440 3.9E-262 T 29-03-2018 IPR005267 Glycerol-3-phosphate transporter GO:0015169|GO:0015794|GO:0016021 AM354_RS13160 5bb96066f5a99150e2ee38cd5d4924af 451 Gene3D G3DSA:1.20.1250.20 18 224 8.1E-34 T 29-03-2018 AM354_RS13160 5bb96066f5a99150e2ee38cd5d4924af 451 Pfam PF07690 Major Facilitator Superfamily 34 400 1.7E-44 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS13160 5bb96066f5a99150e2ee38cd5d4924af 451 ProSitePatterns PS00942 glpT family of transporters signature. 153 169 - T 29-03-2018 IPR021159 Glycerate/sugar phosphate transporter, conserved site GO:0005215|GO:0006810|GO:0016021 Reactome: R-HSA-70153 AM354_RS20735 cf8725c6770f45f943d2f8995a69500b 355 Pfam PF00589 Phage integrase family 261 320 1.2E-12 T 29-03-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM354_RS20735 cf8725c6770f45f943d2f8995a69500b 355 Pfam PF00589 Phage integrase family 175 249 3.3E-6 T 29-03-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM354_RS20735 cf8725c6770f45f943d2f8995a69500b 355 Gene3D G3DSA:1.10.150.130 49 171 2.1E-5 T 29-03-2018 IPR023109 Integrase/recombinase, N-terminal AM354_RS20735 cf8725c6770f45f943d2f8995a69500b 355 SUPERFAMILY SSF56349 63 328 4.12E-44 T 29-03-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AM354_RS20735 cf8725c6770f45f943d2f8995a69500b 355 Gene3D G3DSA:1.10.443.10 172 334 2.4E-37 T 29-03-2018 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM354_RS00325 0eac9466821fce3d753605c60ff22d38 338 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 8 16 - T 29-03-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 AM354_RS00325 0eac9466821fce3d753605c60ff22d38 338 Pfam PF00710 Asparaginase, N-terminal 6 188 6.8E-65 T 29-03-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 AM354_RS00325 0eac9466821fce3d753605c60ff22d38 338 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 84 94 - T 29-03-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 AM354_RS00325 0eac9466821fce3d753605c60ff22d38 338 SUPERFAMILY SSF53774 3 335 4.71E-111 T 29-03-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AM354_RS00325 0eac9466821fce3d753605c60ff22d38 338 PRINTS PR00139 Asparaginase/glutaminase family signature 6 17 4.5E-17 T 29-03-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AM354_RS00325 0eac9466821fce3d753605c60ff22d38 338 PRINTS PR00139 Asparaginase/glutaminase family signature 83 101 4.5E-17 T 29-03-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AM354_RS00325 0eac9466821fce3d753605c60ff22d38 338 PRINTS PR00139 Asparaginase/glutaminase family signature 260 278 4.5E-17 T 29-03-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AM354_RS00325 0eac9466821fce3d753605c60ff22d38 338 PIRSF PIRSF001220 1 334 4.9E-98 T 29-03-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AM354_RS00325 0eac9466821fce3d753605c60ff22d38 338 Gene3D G3DSA:3.40.50.40 210 337 5.8E-42 T 29-03-2018 IPR027473 L-asparaginase, C-terminal domain Reactome: R-HSA-70614 AM354_RS00325 0eac9466821fce3d753605c60ff22d38 338 PIRSF PIRSF500176 2 332 2.3E-113 T 29-03-2018 AM354_RS00325 0eac9466821fce3d753605c60ff22d38 338 Gene3D G3DSA:3.40.50.1170 1 208 3.1E-80 T 29-03-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 AM354_RS00325 0eac9466821fce3d753605c60ff22d38 338 SMART SM00870 5 323 4.7E-141 T 29-03-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AM354_RS00325 0eac9466821fce3d753605c60ff22d38 338 TIGRFAM TIGR00519 asnASE_I: L-asparaginase, type I 3 335 2.0E-128 T 29-03-2018 IPR006033 L-asparaginase, type I GO:0004067|GO:0006520 Reactome: R-HSA-70614 AM354_RS17190 9ab5b97c9c45ac22aab27f819da9354e 326 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 2 118 3.6E-26 T 29-03-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AM354_RS17190 9ab5b97c9c45ac22aab27f819da9354e 326 Gene3D G3DSA:3.30.360.10 144 325 2.6E-29 T 29-03-2018 AM354_RS17190 9ab5b97c9c45ac22aab27f819da9354e 326 SUPERFAMILY SSF55347 126 291 3.4E-24 T 29-03-2018 AM354_RS17190 9ab5b97c9c45ac22aab27f819da9354e 326 SUPERFAMILY SSF51735 2 152 5.75E-43 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS17190 9ab5b97c9c45ac22aab27f819da9354e 326 Gene3D G3DSA:3.40.50.720 1 143 5.5E-36 T 29-03-2018 AM354_RS14165 9133bde9a9c878fb80c42e42748eef85 214 Gene3D G3DSA:3.40.50.300 9 204 2.2E-28 T 29-03-2018 AM354_RS14165 9133bde9a9c878fb80c42e42748eef85 214 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 16 199 28.281 T 29-03-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 AM354_RS14165 9133bde9a9c878fb80c42e42748eef85 214 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 12 195 3.9E-74 T 29-03-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 AM354_RS14165 9133bde9a9c878fb80c42e42748eef85 214 Pfam PF01926 50S ribosome-binding GTPase 30 148 5.0E-21 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 AM354_RS14165 9133bde9a9c878fb80c42e42748eef85 214 SUPERFAMILY SSF52540 18 201 2.22E-36 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS21865 bc68e50cc6b668cac9bd976ea28096c8 1108 Pfam PF00563 EAL domain 891 1089 3.6E-27 T 29-03-2018 IPR001633 EAL domain AM354_RS21865 bc68e50cc6b668cac9bd976ea28096c8 1108 SUPERFAMILY SSF55785 539 664 1.26E-17 T 29-03-2018 IPR000014 PAS domain AM354_RS21865 bc68e50cc6b668cac9bd976ea28096c8 1108 Gene3D G3DSA:3.20.20.450 846 1099 7.4E-32 T 29-03-2018 IPR001633 EAL domain AM354_RS21865 bc68e50cc6b668cac9bd976ea28096c8 1108 Pfam PF08448 PAS fold 561 671 5.4E-8 T 29-03-2018 IPR013656 PAS fold-4 AM354_RS21865 bc68e50cc6b668cac9bd976ea28096c8 1108 SMART SM00052 853 1098 1.4E-8 T 29-03-2018 IPR001633 EAL domain AM354_RS21865 bc68e50cc6b668cac9bd976ea28096c8 1108 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 298 422 7.7E-29 T 29-03-2018 IPR000014 PAS domain AM354_RS21865 bc68e50cc6b668cac9bd976ea28096c8 1108 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 552 675 4.9E-10 T 29-03-2018 IPR000014 PAS domain AM354_RS21865 bc68e50cc6b668cac9bd976ea28096c8 1108 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 475 550 1.7E-5 T 29-03-2018 IPR000014 PAS domain AM354_RS21865 bc68e50cc6b668cac9bd976ea28096c8 1108 SUPERFAMILY SSF55785 439 544 2.79E-17 T 29-03-2018 IPR000014 PAS domain AM354_RS21865 bc68e50cc6b668cac9bd976ea28096c8 1108 Gene3D G3DSA:3.30.450.20 432 548 7.6E-17 T 29-03-2018 AM354_RS21865 bc68e50cc6b668cac9bd976ea28096c8 1108 Gene3D G3DSA:3.30.450.20 287 431 4.7E-29 T 29-03-2018 AM354_RS21865 bc68e50cc6b668cac9bd976ea28096c8 1108 Pfam PF00990 Diguanylate cyclase, GGDEF domain 681 836 8.9E-40 T 29-03-2018 IPR000160 GGDEF domain AM354_RS21865 bc68e50cc6b668cac9bd976ea28096c8 1108 Pfam PF08447 PAS fold 451 537 3.0E-17 T 29-03-2018 IPR013655 PAS fold-3 GO:0005515 AM354_RS21865 bc68e50cc6b668cac9bd976ea28096c8 1108 Pfam PF08447 PAS fold 325 408 1.2E-11 T 29-03-2018 IPR013655 PAS fold-3 GO:0005515 AM354_RS21865 bc68e50cc6b668cac9bd976ea28096c8 1108 Gene3D G3DSA:3.30.70.270 675 845 1.4E-54 T 29-03-2018 AM354_RS21865 bc68e50cc6b668cac9bd976ea28096c8 1108 SMART SM00086 628 670 0.29 T 29-03-2018 IPR001610 PAC motif AM354_RS21865 bc68e50cc6b668cac9bd976ea28096c8 1108 SMART SM00086 501 543 4.1E-8 T 29-03-2018 IPR001610 PAC motif AM354_RS21865 bc68e50cc6b668cac9bd976ea28096c8 1108 SMART SM00086 374 416 2.6E-9 T 29-03-2018 IPR001610 PAC motif AM354_RS21865 bc68e50cc6b668cac9bd976ea28096c8 1108 SUPERFAMILY SSF141868 890 1090 4.84E-27 T 29-03-2018 IPR001633 EAL domain AM354_RS21865 bc68e50cc6b668cac9bd976ea28096c8 1108 Pfam PF05231 MASE1 20 276 5.7E-18 T 29-03-2018 IPR007895 MASE1 AM354_RS21865 bc68e50cc6b668cac9bd976ea28096c8 1108 SUPERFAMILY SSF55073 686 842 5.26E-45 T 29-03-2018 IPR029787 Nucleotide cyclase AM354_RS21865 bc68e50cc6b668cac9bd976ea28096c8 1108 SMART SM00267 670 841 1.0E-55 T 29-03-2018 IPR000160 GGDEF domain AM354_RS21865 bc68e50cc6b668cac9bd976ea28096c8 1108 SMART SM00091 555 620 2.2E-5 T 29-03-2018 IPR000014 PAS domain AM354_RS21865 bc68e50cc6b668cac9bd976ea28096c8 1108 SMART SM00091 301 367 2.6E-12 T 29-03-2018 IPR000014 PAS domain AM354_RS21865 bc68e50cc6b668cac9bd976ea28096c8 1108 SMART SM00091 428 495 7.8 T 29-03-2018 IPR000014 PAS domain AM354_RS21865 bc68e50cc6b668cac9bd976ea28096c8 1108 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 679 840 4.7E-38 T 29-03-2018 IPR000160 GGDEF domain AM354_RS21865 bc68e50cc6b668cac9bd976ea28096c8 1108 SUPERFAMILY SSF55785 294 414 9.99E-24 T 29-03-2018 IPR000014 PAS domain AM354_RS21865 bc68e50cc6b668cac9bd976ea28096c8 1108 Gene3D G3DSA:3.30.450.20 549 674 3.1E-21 T 29-03-2018 AM354_RS12020 b4e533ee2eee10fcdfee57b1d3394ee6 445 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 373 441 4.3E-16 T 29-03-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS12020 b4e533ee2eee10fcdfee57b1d3394ee6 445 SUPERFAMILY SSF53738 156 256 1.37E-29 T 29-03-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS12020 b4e533ee2eee10fcdfee57b1d3394ee6 445 SUPERFAMILY SSF55957 357 444 2.88E-23 T 29-03-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS12020 b4e533ee2eee10fcdfee57b1d3394ee6 445 SUPERFAMILY SSF53738 3 181 2.71E-49 T 29-03-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS12020 b4e533ee2eee10fcdfee57b1d3394ee6 445 Gene3D G3DSA:3.40.120.10 3 154 3.7E-48 T 29-03-2018 AM354_RS12020 b4e533ee2eee10fcdfee57b1d3394ee6 445 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 7 442 4.9E-197 T 29-03-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS12020 b4e533ee2eee10fcdfee57b1d3394ee6 445 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 4 135 7.0E-45 T 29-03-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS12020 b4e533ee2eee10fcdfee57b1d3394ee6 445 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 258 364 1.5E-30 T 29-03-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS12020 b4e533ee2eee10fcdfee57b1d3394ee6 445 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 174 193 1.1E-13 T 29-03-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS12020 b4e533ee2eee10fcdfee57b1d3394ee6 445 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 95 109 1.1E-13 T 29-03-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS12020 b4e533ee2eee10fcdfee57b1d3394ee6 445 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 234 249 1.1E-13 T 29-03-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS12020 b4e533ee2eee10fcdfee57b1d3394ee6 445 Gene3D G3DSA:3.40.120.10 268 373 1.3E-27 T 29-03-2018 AM354_RS12020 b4e533ee2eee10fcdfee57b1d3394ee6 445 Gene3D G3DSA:3.40.120.10 156 267 5.7E-32 T 29-03-2018 AM354_RS12020 b4e533ee2eee10fcdfee57b1d3394ee6 445 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 3 444 47.839 T 29-03-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS12020 b4e533ee2eee10fcdfee57b1d3394ee6 445 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 96 105 - T 29-03-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS12020 b4e533ee2eee10fcdfee57b1d3394ee6 445 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 157 254 7.4E-19 T 29-03-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS12020 b4e533ee2eee10fcdfee57b1d3394ee6 445 SUPERFAMILY SSF53738 258 365 4.71E-30 T 29-03-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS12020 b4e533ee2eee10fcdfee57b1d3394ee6 445 Gene3D G3DSA:3.30.310.50 374 444 1.7E-19 T 29-03-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS10575 891b924f96170d12f5c1228b16f537c4 439 SUPERFAMILY SSF53623 96 297 1.31E-56 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 AM354_RS10575 891b924f96170d12f5c1228b16f537c4 439 SUPERFAMILY SSF51984 3 94 1.96E-23 T 29-03-2018 AM354_RS10575 891b924f96170d12f5c1228b16f537c4 439 Gene3D G3DSA:3.90.190.20 300 434 1.6E-35 T 29-03-2018 AM354_RS10575 891b924f96170d12f5c1228b16f537c4 439 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 7 437 34.426 T 29-03-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS10575 891b924f96170d12f5c1228b16f537c4 439 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 8 435 5.2E-126 T 29-03-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS10575 891b924f96170d12f5c1228b16f537c4 439 Pfam PF08245 Mur ligase middle domain 110 280 2.0E-27 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 AM354_RS10575 891b924f96170d12f5c1228b16f537c4 439 Gene3D G3DSA:3.40.50.720 1 94 2.5E-14 T 29-03-2018 AM354_RS10575 891b924f96170d12f5c1228b16f537c4 439 Pfam PF02875 Mur ligase family, glutamate ligase domain 301 373 1.6E-8 T 29-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AM354_RS10575 891b924f96170d12f5c1228b16f537c4 439 Gene3D G3DSA:3.40.1190.10 95 299 5.9E-61 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 AM354_RS10575 891b924f96170d12f5c1228b16f537c4 439 SUPERFAMILY SSF53244 299 437 2.32E-51 T 29-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AM354_RS01465 547ef00d0bef5f51a6b44dae089cfaa0 254 SMART SM00100 30 151 3.3E-21 T 29-03-2018 IPR000595 Cyclic nucleotide-binding domain AM354_RS01465 547ef00d0bef5f51a6b44dae089cfaa0 254 SMART SM00419 187 235 7.1E-13 T 29-03-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AM354_RS01465 547ef00d0bef5f51a6b44dae089cfaa0 254 ProSitePatterns PS00042 Crp-type HTH domain signature. 195 218 - T 29-03-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 AM354_RS01465 547ef00d0bef5f51a6b44dae089cfaa0 254 SUPERFAMILY SSF46785 165 243 4.18E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS01465 547ef00d0bef5f51a6b44dae089cfaa0 254 Pfam PF00027 Cyclic nucleotide-binding domain 51 132 2.8E-15 T 29-03-2018 IPR000595 Cyclic nucleotide-binding domain AM354_RS01465 547ef00d0bef5f51a6b44dae089cfaa0 254 Gene3D G3DSA:1.10.10.10 166 253 2.2E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS01465 547ef00d0bef5f51a6b44dae089cfaa0 254 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 209 224 2.6E-11 T 29-03-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AM354_RS01465 547ef00d0bef5f51a6b44dae089cfaa0 254 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 193 209 2.6E-11 T 29-03-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AM354_RS01465 547ef00d0bef5f51a6b44dae089cfaa0 254 Pfam PF13545 Crp-like helix-turn-helix domain 168 240 4.9E-15 T 29-03-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AM354_RS01465 547ef00d0bef5f51a6b44dae089cfaa0 254 SUPERFAMILY SSF51206 23 162 6.42E-31 T 29-03-2018 IPR018490 Cyclic nucleotide-binding-like AM354_RS01465 547ef00d0bef5f51a6b44dae089cfaa0 254 Gene3D G3DSA:2.60.120.10 25 165 9.4E-19 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS24205 61a982eab8b6215d4282e98d86ecf132 409 Pfam PF00328 Histidine phosphatase superfamily (branch 2) 27 357 9.8E-18 T 29-03-2018 IPR000560 Histidine phosphatase superfamily, clade-2 GO:0003993 AM354_RS24205 61a982eab8b6215d4282e98d86ecf132 409 SUPERFAMILY SSF53254 24 408 1.85E-79 T 29-03-2018 IPR029033 Histidine phosphatase superfamily AM354_RS24205 61a982eab8b6215d4282e98d86ecf132 409 Gene3D G3DSA:3.40.50.1240 15 409 4.7E-49 T 29-03-2018 IPR029033 Histidine phosphatase superfamily AM354_RS24205 61a982eab8b6215d4282e98d86ecf132 409 ProSitePatterns PS00616 Histidine acid phosphatases phosphohistidine signature. 27 41 - T 29-03-2018 IPR033379 Histidine acid phosphatase active site AM354_RS24205 61a982eab8b6215d4282e98d86ecf132 409 ProSitePatterns PS00778 Histidine acid phosphatases active site signature. 302 318 - T 29-03-2018 IPR033379 Histidine acid phosphatase active site AM354_RS09950 a79875b6419d5bba9f74ff92c6fa2bbf 239 Pfam PF08241 Methyltransferase domain 77 125 7.4E-10 T 29-03-2018 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AM354_RS09950 a79875b6419d5bba9f74ff92c6fa2bbf 239 Gene3D G3DSA:3.40.50.150 59 210 1.2E-15 T 29-03-2018 AM354_RS09950 a79875b6419d5bba9f74ff92c6fa2bbf 239 SUPERFAMILY SSF53335 77 188 1.21E-16 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS16480 953a1cb94de026bd0c79c2226ceaa93b 190 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 144 172 - T 29-03-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AM354_RS16480 953a1cb94de026bd0c79c2226ceaa93b 190 Gene3D G3DSA:2.160.10.10 1 190 1.8E-48 T 29-03-2018 AM354_RS16480 953a1cb94de026bd0c79c2226ceaa93b 190 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 136 170 6.9E-11 T 29-03-2018 IPR001451 Hexapeptide repeat AM354_RS16480 953a1cb94de026bd0c79c2226ceaa93b 190 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 74 109 1.0E-5 T 29-03-2018 IPR001451 Hexapeptide repeat AM354_RS16480 953a1cb94de026bd0c79c2226ceaa93b 190 SMART SM01266 4 58 1.7E-12 T 29-03-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 AM354_RS16480 953a1cb94de026bd0c79c2226ceaa93b 190 SUPERFAMILY SSF51161 2 188 1.94E-45 T 29-03-2018 IPR011004 Trimeric LpxA-like AM354_RS16480 953a1cb94de026bd0c79c2226ceaa93b 190 Pfam PF12464 Maltose acetyltransferase 6 56 1.9E-8 T 29-03-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 AM354_RS05310 a816eff34944185963a855706fcfd4a5 361 Gene3D G3DSA:2.40.50.100 156 340 9.5E-5 T 29-03-2018 AM354_RS05310 a816eff34944185963a855706fcfd4a5 361 Gene3D G3DSA:1.10.287.470 99 155 2.4E-5 T 29-03-2018 AM354_RS05310 a816eff34944185963a855706fcfd4a5 361 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 45 345 3.4E-73 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AM354_RS05310 a816eff34944185963a855706fcfd4a5 361 Gene3D G3DSA:2.40.50.100 18 97 4.3E-7 T 29-03-2018 AM354_RS05310 a816eff34944185963a855706fcfd4a5 361 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 61 264 1.1E-28 T 29-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AM354_RS05310 a816eff34944185963a855706fcfd4a5 361 SUPERFAMILY SSF111369 57 269 8.5E-38 T 29-03-2018 AM354_RS19745 a33004503c003d9279c07e56a648dfda 527 Pfam PF02652 L-lactate permease 5 523 1.9E-134 T 29-03-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 AM354_RS19745 a33004503c003d9279c07e56a648dfda 527 TIGRFAM TIGR00795 lctP: transporter, lactate permease (LctP) family 5 524 1.7E-124 T 29-03-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 AM354_RS08405 eb8f2cc9130c4263bcf2d2ebb2eac8e2 355 Gene3D G3DSA:3.30.70.270 173 350 1.6E-49 T 29-03-2018 AM354_RS08405 eb8f2cc9130c4263bcf2d2ebb2eac8e2 355 Pfam PF05230 MASE2 domain 20 107 1.4E-31 T 29-03-2018 IPR007894 MASE2 AM354_RS08405 eb8f2cc9130c4263bcf2d2ebb2eac8e2 355 SMART SM00267 179 350 4.2E-57 T 29-03-2018 IPR000160 GGDEF domain AM354_RS08405 eb8f2cc9130c4263bcf2d2ebb2eac8e2 355 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 186 349 1.6E-53 T 29-03-2018 IPR000160 GGDEF domain AM354_RS08405 eb8f2cc9130c4263bcf2d2ebb2eac8e2 355 Pfam PF00990 Diguanylate cyclase, GGDEF domain 191 346 1.7E-43 T 29-03-2018 IPR000160 GGDEF domain AM354_RS08405 eb8f2cc9130c4263bcf2d2ebb2eac8e2 355 SUPERFAMILY SSF55073 195 348 5.49E-45 T 29-03-2018 IPR029787 Nucleotide cyclase AM354_RS19040 ab2bca2c6baecc645766748e40698128 452 PRINTS PR00344 Bacterial sensor protein C-terminal signature 384 398 3.0E-5 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS19040 ab2bca2c6baecc645766748e40698128 452 PRINTS PR00344 Bacterial sensor protein C-terminal signature 416 434 3.0E-5 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS19040 ab2bca2c6baecc645766748e40698128 452 SMART SM00387 351 452 4.2E-23 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS19040 ab2bca2c6baecc645766748e40698128 452 Pfam PF00512 His Kinase A (phospho-acceptor) domain 241 304 6.2E-11 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS19040 ab2bca2c6baecc645766748e40698128 452 SUPERFAMILY SSF47384 222 304 1.88E-14 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS19040 ab2bca2c6baecc645766748e40698128 452 Gene3D G3DSA:3.30.565.10 309 452 2.9E-29 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS19040 ab2bca2c6baecc645766748e40698128 452 Pfam PF08521 Two-component sensor kinase N-terminal 19 159 5.7E-6 T 29-03-2018 IPR013727 Two-component sensor kinase, N-terminal AM354_RS19040 ab2bca2c6baecc645766748e40698128 452 Gene3D G3DSA:1.20.5.1040 132 186 2.8E-14 T 29-03-2018 AM354_RS19040 ab2bca2c6baecc645766748e40698128 452 Gene3D G3DSA:1.20.5.1040 4 55 4.0E-10 T 29-03-2018 AM354_RS19040 ab2bca2c6baecc645766748e40698128 452 SUPERFAMILY SSF55874 294 452 2.49E-32 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS19040 ab2bca2c6baecc645766748e40698128 452 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 356 451 2.9E-17 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS19040 ab2bca2c6baecc645766748e40698128 452 SMART SM00388 239 305 7.3E-13 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS19040 ab2bca2c6baecc645766748e40698128 452 Gene3D G3DSA:1.10.287.130 229 301 3.9E-11 T 29-03-2018 AM354_RS12680 a7f47aac1104a9720f140b75dd19f03d 647 Pfam PF01964 Radical SAM ThiC family 150 598 5.4E-200 T 29-03-2018 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AM354_RS12680 a7f47aac1104a9720f140b75dd19f03d 647 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 149 603 56.332 T 29-03-2018 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AM354_RS12680 a7f47aac1104a9720f140b75dd19f03d 647 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 149 601 9.2E-224 T 29-03-2018 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AM354_RS12680 a7f47aac1104a9720f140b75dd19f03d 647 Pfam PF13667 ThiC-associated domain 29 109 1.2E-31 T 29-03-2018 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AM354_RS13350 13154aeb596e2151e2ed472d90d6d70c 420 SUPERFAMILY SSF51735 5 198 1.38E-45 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS13350 13154aeb596e2151e2ed472d90d6d70c 420 PIRSF PIRSF500136 1 420 7.2E-147 T 29-03-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 AM354_RS13350 13154aeb596e2151e2ed472d90d6d70c 420 SUPERFAMILY SSF52413 311 419 3.53E-25 T 29-03-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AM354_RS13350 13154aeb596e2151e2ed472d90d6d70c 420 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 5 416 2.6E-119 T 29-03-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 AM354_RS13350 13154aeb596e2151e2ed472d90d6d70c 420 SMART SM00984 324 420 8.0E-26 T 29-03-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AM354_RS13350 13154aeb596e2151e2ed472d90d6d70c 420 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 5 187 1.4E-58 T 29-03-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AM354_RS13350 13154aeb596e2151e2ed472d90d6d70c 420 SUPERFAMILY SSF48179 206 298 1.68E-27 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM354_RS13350 13154aeb596e2151e2ed472d90d6d70c 420 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 206 293 3.6E-26 T 29-03-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AM354_RS13350 13154aeb596e2151e2ed472d90d6d70c 420 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 324 419 5.5E-20 T 29-03-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AM354_RS13350 13154aeb596e2151e2ed472d90d6d70c 420 Hamap MF_02029 UDP-N-acetyl-D-mannosamine dehydrogenase [wecC]. 1 420 79.384 T 29-03-2018 IPR032891 UDP-N-acetyl-D-mannosamine dehydrogenase WecC GO:0009246|GO:0089714 KEGG: 00520+1.1.1.336|MetaCyc: PWY-7335 AM354_RS13350 13154aeb596e2151e2ed472d90d6d70c 420 Gene3D G3DSA:3.40.50.720 4 205 2.0E-46 T 29-03-2018 AM354_RS13350 13154aeb596e2151e2ed472d90d6d70c 420 Gene3D G3DSA:3.40.50.720 230 420 1.2E-51 T 29-03-2018 AM354_RS13350 13154aeb596e2151e2ed472d90d6d70c 420 PIRSF PIRSF000124 4 418 1.3E-73 T 29-03-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 AM354_RS13350 13154aeb596e2151e2ed472d90d6d70c 420 Gene3D G3DSA:1.20.5.170 206 229 1.0E-14 T 29-03-2018 AM354_RS05665 72f3d485f5512f7d7ff01041b186d1ad 94 Pfam PF00216 Bacterial DNA-binding protein 1 91 2.9E-29 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM354_RS05665 72f3d485f5512f7d7ff01041b186d1ad 94 Gene3D G3DSA:4.10.520.10 1 94 7.1E-31 T 29-03-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 AM354_RS05665 72f3d485f5512f7d7ff01041b186d1ad 94 SMART SM00411 1 91 2.8E-42 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM354_RS05665 72f3d485f5512f7d7ff01041b186d1ad 94 TIGRFAM TIGR00988 hip: integration host factor, beta subunit 1 93 3.2E-52 T 29-03-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 AM354_RS05665 72f3d485f5512f7d7ff01041b186d1ad 94 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 47 66 - T 29-03-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 AM354_RS05665 72f3d485f5512f7d7ff01041b186d1ad 94 SUPERFAMILY SSF47729 1 91 1.91E-29 T 29-03-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 AM354_RS05665 72f3d485f5512f7d7ff01041b186d1ad 94 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 5.9E-19 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM354_RS05665 72f3d485f5512f7d7ff01041b186d1ad 94 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 5.9E-19 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM354_RS05665 72f3d485f5512f7d7ff01041b186d1ad 94 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 5.9E-19 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM354_RS05665 72f3d485f5512f7d7ff01041b186d1ad 94 Hamap MF_00381 Integration host factor subunit beta [ihfB]. 1 94 30.445 T 29-03-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 AM354_RS16015 048aef97f8471e481532d1597f92e3c7 100 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 8 98 22.715 T 29-03-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 AM354_RS16015 048aef97f8471e481532d1597f92e3c7 100 ProSitePatterns PS00050 Ribosomal protein L23 signature. 81 96 - T 29-03-2018 IPR001014 Ribosomal protein L23/L25, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16015 048aef97f8471e481532d1597f92e3c7 100 SUPERFAMILY SSF54189 6 97 3.96E-31 T 29-03-2018 IPR012678 Ribosomal protein L23/L15e core domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS16015 048aef97f8471e481532d1597f92e3c7 100 Pfam PF00276 Ribosomal protein L23 9 95 3.7E-32 T 29-03-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 AM354_RS16015 048aef97f8471e481532d1597f92e3c7 100 Gene3D G3DSA:3.30.70.330 6 100 1.7E-31 T 29-03-2018 AM354_RS22400 760c108e24ee78cad6f7906d32fefd3c 259 TIGRFAM TIGR01252 acetolac_decarb: alpha-acetolactate decarboxylase 28 258 6.3E-94 T 29-03-2018 IPR005128 Alpha-acetolactate decarboxylase GO:0045151|GO:0047605 KEGG: 00650+4.1.1.5|KEGG: 00660+4.1.1.5|MetaCyc: PWY-5939 AM354_RS22400 760c108e24ee78cad6f7906d32fefd3c 259 SUPERFAMILY SSF117856 28 258 5.75E-87 T 29-03-2018 AM354_RS22400 760c108e24ee78cad6f7906d32fefd3c 259 Pfam PF03306 Alpha-acetolactate decarboxylase 29 245 8.8E-88 T 29-03-2018 IPR005128 Alpha-acetolactate decarboxylase GO:0045151|GO:0047605 KEGG: 00650+4.1.1.5|KEGG: 00660+4.1.1.5|MetaCyc: PWY-5939 AM354_RS22400 760c108e24ee78cad6f7906d32fefd3c 259 PIRSF PIRSF001332 14 259 9.4E-97 T 29-03-2018 IPR005128 Alpha-acetolactate decarboxylase GO:0045151|GO:0047605 KEGG: 00650+4.1.1.5|KEGG: 00660+4.1.1.5|MetaCyc: PWY-5939 AM354_RS22400 760c108e24ee78cad6f7906d32fefd3c 259 Gene3D G3DSA:3.30.1330.80 26 116 4.3E-37 T 29-03-2018 AM354_RS22400 760c108e24ee78cad6f7906d32fefd3c 259 Gene3D G3DSA:3.30.1330.80 117 223 3.7E-45 T 29-03-2018 AM354_RS06725 e5c87a758705141afaefcce334090c6b 223 Gene3D G3DSA:1.10.10.10 120 223 2.1E-27 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS06725 e5c87a758705141afaefcce334090c6b 223 TIGRFAM TIGR01387 cztR_silR_copR: heavy metal response regulator 3 218 8.0E-100 T 29-03-2018 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response GO:0003677|GO:0006355 AM354_RS06725 e5c87a758705141afaefcce334090c6b 223 SMART SM00448 1 111 2.6E-37 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS06725 e5c87a758705141afaefcce334090c6b 223 Gene3D G3DSA:3.40.50.2300 1 119 3.3E-31 T 29-03-2018 AM354_RS06725 e5c87a758705141afaefcce334090c6b 223 SUPERFAMILY SSF52172 1 173 2.72E-38 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS06725 e5c87a758705141afaefcce334090c6b 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 218 4.4E-25 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS06725 e5c87a758705141afaefcce334090c6b 223 SMART SM00862 144 219 7.4E-23 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS06725 e5c87a758705141afaefcce334090c6b 223 Pfam PF00072 Response regulator receiver domain 3 111 2.0E-22 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS22855 1b63528a0d6e52fb4f4913ea53b8fc29 477 Gene3D G3DSA:3.40.640.10 139 380 2.3E-48 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS22855 1b63528a0d6e52fb4f4913ea53b8fc29 477 Pfam PF00155 Aminotransferase class I and II 138 429 4.2E-24 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM354_RS22855 1b63528a0d6e52fb4f4913ea53b8fc29 477 SUPERFAMILY SSF53383 116 474 9.11E-89 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS22855 1b63528a0d6e52fb4f4913ea53b8fc29 477 Pfam PF00392 Bacterial regulatory proteins, gntR family 21 82 1.4E-15 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS22855 1b63528a0d6e52fb4f4913ea53b8fc29 477 SMART SM00345 23 82 7.3E-15 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS22855 1b63528a0d6e52fb4f4913ea53b8fc29 477 Gene3D G3DSA:3.90.1150.10 381 477 5.9E-15 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS22855 1b63528a0d6e52fb4f4913ea53b8fc29 477 SUPERFAMILY SSF46785 14 83 3.54E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS22855 1b63528a0d6e52fb4f4913ea53b8fc29 477 Gene3D G3DSA:1.10.10.10 7 84 3.2E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS22855 1b63528a0d6e52fb4f4913ea53b8fc29 477 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 56 2.0E-6 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS22855 1b63528a0d6e52fb4f4913ea53b8fc29 477 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 56 72 2.0E-6 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS22385 f621cf28e5247b32e1cd579f6b8f6b2b 461 Gene3D G3DSA:2.30.170.30 1 52 1.9E-22 T 29-03-2018 AM354_RS22385 f621cf28e5247b32e1cd579f6b8f6b2b 461 Pfam PF06751 Ethanolamine ammonia lyase large subunit (EutB) 11 445 3.2E-223 T 29-03-2018 IPR010628 Ethanolamine ammonia lyase large subunit GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 AM354_RS22385 f621cf28e5247b32e1cd579f6b8f6b2b 461 PIRSF PIRSF018788 1 458 4.4E-234 T 29-03-2018 IPR010628 Ethanolamine ammonia lyase large subunit GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 AM354_RS22385 f621cf28e5247b32e1cd579f6b8f6b2b 461 Gene3D G3DSA:3.20.20.70 142 450 3.5E-161 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS22385 f621cf28e5247b32e1cd579f6b8f6b2b 461 Gene3D G3DSA:1.10.220.70 55 139 2.1E-40 T 29-03-2018 AM354_RS11315 ab9ee4a4dc335098c249e67a8e0367ad 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 186 198 3.3E-12 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS11315 ab9ee4a4dc335098c249e67a8e0367ad 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 170 3.3E-12 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS11315 ab9ee4a4dc335098c249e67a8e0367ad 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 186 3.3E-12 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS11315 ab9ee4a4dc335098c249e67a8e0367ad 215 Pfam PF00196 Bacterial regulatory proteins, luxR family 155 207 3.2E-14 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS11315 ab9ee4a4dc335098c249e67a8e0367ad 215 Gene3D G3DSA:3.30.450.80 1 148 2.2E-7 T 29-03-2018 AM354_RS11315 ab9ee4a4dc335098c249e67a8e0367ad 215 Gene3D G3DSA:1.10.10.10 155 213 1.7E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS11315 ab9ee4a4dc335098c249e67a8e0367ad 215 SUPERFAMILY SSF46894 148 208 3.74E-18 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS11315 ab9ee4a4dc335098c249e67a8e0367ad 215 ProSitePatterns PS00622 LuxR-type HTH domain signature. 170 197 - T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS11315 ab9ee4a4dc335098c249e67a8e0367ad 215 SMART SM00421 153 210 3.6E-19 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS17820 29e8ae8e0cce76337edc6641cda64b41 226 SUPERFAMILY SSF52172 1 177 7.55E-39 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS17820 29e8ae8e0cce76337edc6641cda64b41 226 SMART SM00862 146 221 4.9E-25 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS17820 29e8ae8e0cce76337edc6641cda64b41 226 SMART SM00448 1 112 1.4E-40 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS17820 29e8ae8e0cce76337edc6641cda64b41 226 Pfam PF00072 Response regulator receiver domain 3 113 1.6E-26 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS17820 29e8ae8e0cce76337edc6641cda64b41 226 Gene3D G3DSA:1.10.10.10 122 226 5.5E-30 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS17820 29e8ae8e0cce76337edc6641cda64b41 226 TIGRFAM TIGR01387 cztR_silR_copR: heavy metal response regulator 3 221 3.2E-96 T 29-03-2018 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response GO:0003677|GO:0006355 AM354_RS17820 29e8ae8e0cce76337edc6641cda64b41 226 Gene3D G3DSA:3.40.50.2300 1 121 1.5E-32 T 29-03-2018 AM354_RS17820 29e8ae8e0cce76337edc6641cda64b41 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 221 6.4E-25 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS01890 0bdb24a5bb085e2f1bccf89ee091a218 256 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 41 59 2.5E-10 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS01890 0bdb24a5bb085e2f1bccf89ee091a218 256 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 27 41 2.5E-10 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS01890 0bdb24a5bb085e2f1bccf89ee091a218 256 SUPERFAMILY SSF100950 78 234 5.18E-31 T 29-03-2018 AM354_RS01890 0bdb24a5bb085e2f1bccf89ee091a218 256 Gene3D G3DSA:3.40.50.1360 67 251 5.5E-40 T 29-03-2018 AM354_RS01890 0bdb24a5bb085e2f1bccf89ee091a218 256 Gene3D G3DSA:1.10.10.10 2 65 4.2E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS01890 0bdb24a5bb085e2f1bccf89ee091a218 256 Pfam PF00455 DeoR C terminal sensor domain 78 234 3.3E-45 T 29-03-2018 IPR014036 DeoR C-terminal sensor domain AM354_RS01890 0bdb24a5bb085e2f1bccf89ee091a218 256 ProSitePatterns PS00894 DeoR-type HTH domain signature. 9 43 - T 29-03-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AM354_RS01890 0bdb24a5bb085e2f1bccf89ee091a218 256 Pfam PF08220 DeoR-like helix-turn-helix domain 9 61 7.4E-18 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS01890 0bdb24a5bb085e2f1bccf89ee091a218 256 SMART SM00420 9 61 1.1E-17 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS01890 0bdb24a5bb085e2f1bccf89ee091a218 256 SMART SM01134 75 236 2.5E-58 T 29-03-2018 AM354_RS01890 0bdb24a5bb085e2f1bccf89ee091a218 256 SUPERFAMILY SSF46785 8 63 1.82E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS16710 bfea6f37fb18bf55ae5455481e24c86e 194 Pfam PF02545 Maf-like protein 4 184 1.5E-57 T 29-03-2018 IPR003697 Maf-like protein GO:0047429 AM354_RS16710 bfea6f37fb18bf55ae5455481e24c86e 194 SUPERFAMILY SSF52972 2 184 6.47E-60 T 29-03-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AM354_RS16710 bfea6f37fb18bf55ae5455481e24c86e 194 PIRSF PIRSF006305 1 190 1.1E-50 T 29-03-2018 IPR003697 Maf-like protein GO:0047429 AM354_RS16710 bfea6f37fb18bf55ae5455481e24c86e 194 TIGRFAM TIGR00172 maf: septum formation protein Maf 2 182 2.4E-62 T 29-03-2018 IPR003697 Maf-like protein GO:0047429 AM354_RS16710 bfea6f37fb18bf55ae5455481e24c86e 194 Gene3D G3DSA:3.90.950.10 1 188 9.5E-69 T 29-03-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AM354_RS16710 bfea6f37fb18bf55ae5455481e24c86e 194 Hamap MF_00528 Septum formation protein Maf [maf]. 3 189 31.414 T 29-03-2018 IPR003697 Maf-like protein GO:0047429 AM354_RS10430 9b3c209a9f4c3bbb7be621d3956104c2 233 SUPERFAMILY SSF53167 1 229 1.27E-74 T 29-03-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AM354_RS10430 9b3c209a9f4c3bbb7be621d3956104c2 233 Hamap MF_01684 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [mtnN]. 2 229 46.751 T 29-03-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 AM354_RS10430 9b3c209a9f4c3bbb7be621d3956104c2 233 TIGRFAM TIGR01704 MTA/SAH-Nsdase: MTA/SAH nucleosidase 2 228 7.0E-114 T 29-03-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 AM354_RS10430 9b3c209a9f4c3bbb7be621d3956104c2 233 Pfam PF01048 Phosphorylase superfamily 2 225 3.8E-48 T 29-03-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AM354_RS10430 9b3c209a9f4c3bbb7be621d3956104c2 233 Gene3D G3DSA:3.40.50.1580 1 232 2.3E-57 T 29-03-2018 AM354_RS23975 e87305ba9527a94ad0f0db1e7ce37d77 372 SUPERFAMILY SSF53822 27 370 1.18E-93 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS23975 e87305ba9527a94ad0f0db1e7ce37d77 372 Gene3D G3DSA:3.40.50.2300 22 245 5.4E-54 T 29-03-2018 AM354_RS23975 e87305ba9527a94ad0f0db1e7ce37d77 372 Pfam PF13458 Periplasmic binding protein 28 367 9.3E-65 T 29-03-2018 IPR028081 Leucine-binding protein domain AM354_RS23975 e87305ba9527a94ad0f0db1e7ce37d77 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 69 87 4.8E-28 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AM354_RS23975 e87305ba9527a94ad0f0db1e7ce37d77 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 28 44 4.8E-28 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AM354_RS23975 e87305ba9527a94ad0f0db1e7ce37d77 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 282 295 4.8E-28 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AM354_RS23975 e87305ba9527a94ad0f0db1e7ce37d77 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 50 66 4.8E-28 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AM354_RS23975 e87305ba9527a94ad0f0db1e7ce37d77 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 333 348 4.8E-28 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AM354_RS23975 e87305ba9527a94ad0f0db1e7ce37d77 372 Gene3D G3DSA:3.40.50.2300 279 369 7.1E-7 T 29-03-2018 AM354_RS12025 5671cc0a6d9cad2ca13ffeded7ade878 278 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 17 32 - T 29-03-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AM354_RS12025 5671cc0a6d9cad2ca13ffeded7ade878 278 SUPERFAMILY SSF51717 7 274 8.63E-106 T 29-03-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AM354_RS12025 5671cc0a6d9cad2ca13ffeded7ade878 278 Gene3D G3DSA:3.20.20.20 2 278 1.7E-109 T 29-03-2018 AM354_RS12025 5671cc0a6d9cad2ca13ffeded7ade878 278 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 16 271 4.6E-102 T 29-03-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 AM354_RS12025 5671cc0a6d9cad2ca13ffeded7ade878 278 Pfam PF00809 Pterin binding enzyme 18 257 1.8E-87 T 29-03-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AM354_RS12025 5671cc0a6d9cad2ca13ffeded7ade878 278 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 51 64 - T 29-03-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AM354_RS25935 2455053a6906736a69ca40bce64bc56b 69 PIRSF PIRSF002599 1 69 6.4E-26 T 29-03-2018 IPR012156 Cold shock, CspA GO:0003676 AM354_RS25935 2455053a6906736a69ca40bce64bc56b 69 SUPERFAMILY SSF50249 3 68 2.06E-26 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS25935 2455053a6906736a69ca40bce64bc56b 69 PRINTS PR00050 Cold shock protein signature 42 60 1.1E-18 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM354_RS25935 2455053a6906736a69ca40bce64bc56b 69 PRINTS PR00050 Cold shock protein signature 27 36 1.1E-18 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM354_RS25935 2455053a6906736a69ca40bce64bc56b 69 PRINTS PR00050 Cold shock protein signature 6 21 1.1E-18 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM354_RS25935 2455053a6906736a69ca40bce64bc56b 69 Pfam PF00313 'Cold-shock' DNA-binding domain 5 68 1.8E-33 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM354_RS25935 2455053a6906736a69ca40bce64bc56b 69 SMART SM00357 5 69 8.3E-32 T 29-03-2018 IPR011129 Cold shock domain GO:0003676 AM354_RS25935 2455053a6906736a69ca40bce64bc56b 69 Gene3D G3DSA:2.40.50.140 4 69 4.8E-30 T 29-03-2018 AM354_RS25935 2455053a6906736a69ca40bce64bc56b 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 17 36 - T 29-03-2018 IPR019844 Cold-shock conserved site AM354_RS00225 de51c3074cba98d71af5b00b85a26ecc 434 Hamap MF_01202 D-amino acid dehydrogenase [dadA]. 1 410 52.741 T 29-03-2018 IPR023080 D-amino acid dehydrogenase DadA GO:0008718|GO:0019478|GO:0055114 AM354_RS00225 de51c3074cba98d71af5b00b85a26ecc 434 Gene3D G3DSA:3.50.50.60 1 430 2.8E-46 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS00225 de51c3074cba98d71af5b00b85a26ecc 434 SUPERFAMILY SSF54373 269 359 1.44E-17 T 29-03-2018 AM354_RS00225 de51c3074cba98d71af5b00b85a26ecc 434 SUPERFAMILY SSF51905 107 271 1.28E-53 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS00225 de51c3074cba98d71af5b00b85a26ecc 434 SUPERFAMILY SSF51905 1 54 1.28E-53 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS00225 de51c3074cba98d71af5b00b85a26ecc 434 SUPERFAMILY SSF51905 359 418 1.28E-53 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS00225 de51c3074cba98d71af5b00b85a26ecc 434 Pfam PF01266 FAD dependent oxidoreductase 2 397 6.9E-74 T 29-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AM354_RS11685 026f96265511ea2918b8d93cde25f1a3 503 Gene3D G3DSA:3.40.630.10 170 500 1.9E-134 T 29-03-2018 AM354_RS11685 026f96265511ea2918b8d93cde25f1a3 503 Gene3D G3DSA:3.40.220.10 1 157 8.3E-30 T 29-03-2018 AM354_RS11685 026f96265511ea2918b8d93cde25f1a3 503 PRINTS PR00481 Cytosol aminopeptidase signature 374 389 1.1E-53 T 29-03-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AM354_RS11685 026f96265511ea2918b8d93cde25f1a3 503 PRINTS PR00481 Cytosol aminopeptidase signature 346 366 1.1E-53 T 29-03-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AM354_RS11685 026f96265511ea2918b8d93cde25f1a3 503 PRINTS PR00481 Cytosol aminopeptidase signature 287 308 1.1E-53 T 29-03-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AM354_RS11685 026f96265511ea2918b8d93cde25f1a3 503 PRINTS PR00481 Cytosol aminopeptidase signature 324 345 1.1E-53 T 29-03-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AM354_RS11685 026f96265511ea2918b8d93cde25f1a3 503 PRINTS PR00481 Cytosol aminopeptidase signature 265 282 1.1E-53 T 29-03-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AM354_RS11685 026f96265511ea2918b8d93cde25f1a3 503 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 186 489 8.6E-123 T 29-03-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AM354_RS11685 026f96265511ea2918b8d93cde25f1a3 503 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 3 498 41.039 T 29-03-2018 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 AM354_RS11685 026f96265511ea2918b8d93cde25f1a3 503 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 19 147 2.0E-33 T 29-03-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AM354_RS11685 026f96265511ea2918b8d93cde25f1a3 503 SUPERFAMILY SSF52949 1 184 3.77E-51 T 29-03-2018 AM354_RS11685 026f96265511ea2918b8d93cde25f1a3 503 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 350 357 - T 29-03-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AM354_RS11685 026f96265511ea2918b8d93cde25f1a3 503 SUPERFAMILY SSF53187 180 496 2.45E-125 T 29-03-2018 AM354_RS17310 663a8bc915b4f6c92f6b60a68d0d9fbb 945 Pfam PF08335 GlnD PII-uridylyltransferase 298 437 2.5E-47 T 29-03-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 AM354_RS17310 663a8bc915b4f6c92f6b60a68d0d9fbb 945 Pfam PF08335 GlnD PII-uridylyltransferase 826 918 1.8E-10 T 29-03-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 AM354_RS17310 663a8bc915b4f6c92f6b60a68d0d9fbb 945 Gene3D G3DSA:1.10.4050.10 1 111 1.9E-16 T 29-03-2018 AM354_RS17310 663a8bc915b4f6c92f6b60a68d0d9fbb 945 Gene3D G3DSA:1.10.4050.10 524 638 6.5E-21 T 29-03-2018 AM354_RS17310 663a8bc915b4f6c92f6b60a68d0d9fbb 945 Gene3D G3DSA:3.30.460.10 639 812 3.6E-59 T 29-03-2018 AM354_RS17310 663a8bc915b4f6c92f6b60a68d0d9fbb 945 Gene3D G3DSA:3.30.460.10 112 285 2.2E-58 T 29-03-2018 AM354_RS17310 663a8bc915b4f6c92f6b60a68d0d9fbb 945 SUPERFAMILY SSF81593 288 437 3.22E-45 T 29-03-2018 AM354_RS17310 663a8bc915b4f6c92f6b60a68d0d9fbb 945 Hamap MF_00802 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme [glnE]. 28 945 19.696 T 29-03-2018 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme GO:0008882 AM354_RS17310 663a8bc915b4f6c92f6b60a68d0d9fbb 945 SUPERFAMILY SSF81301 19 287 1.47E-90 T 29-03-2018 AM354_RS17310 663a8bc915b4f6c92f6b60a68d0d9fbb 945 SUPERFAMILY SSF81593 816 944 2.75E-34 T 29-03-2018 AM354_RS17310 663a8bc915b4f6c92f6b60a68d0d9fbb 945 SUPERFAMILY SSF81301 526 814 1.7E-88 T 29-03-2018 AM354_RS17310 663a8bc915b4f6c92f6b60a68d0d9fbb 945 Gene3D G3DSA:1.20.120.330 813 945 9.8E-37 T 29-03-2018 AM354_RS17310 663a8bc915b4f6c92f6b60a68d0d9fbb 945 Gene3D G3DSA:1.20.120.330 286 441 4.9E-51 T 29-03-2018 AM354_RS17310 663a8bc915b4f6c92f6b60a68d0d9fbb 945 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 554 806 2.2E-99 T 29-03-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 AM354_RS17310 663a8bc915b4f6c92f6b60a68d0d9fbb 945 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 36 277 6.4E-96 T 29-03-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 AM354_RS08290 170c8529e77ef8977c947d59f2db431d 292 Pfam PF00571 CBS domain 69 123 1.7E-8 T 29-03-2018 IPR000644 CBS domain AM354_RS08290 170c8529e77ef8977c947d59f2db431d 292 Pfam PF00571 CBS domain 143 189 1.1E-4 T 29-03-2018 IPR000644 CBS domain AM354_RS08290 170c8529e77ef8977c947d59f2db431d 292 SUPERFAMILY SSF54631 66 202 3.79E-32 T 29-03-2018 AM354_RS08290 170c8529e77ef8977c947d59f2db431d 292 Gene3D G3DSA:3.30.465.10 200 281 3.2E-27 T 29-03-2018 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AM354_RS08290 170c8529e77ef8977c947d59f2db431d 292 Gene3D G3DSA:3.10.580.10 50 199 3.3E-34 T 29-03-2018 AM354_RS08290 170c8529e77ef8977c947d59f2db431d 292 SMART SM01091 205 283 2.8E-30 T 29-03-2018 IPR005170 Transporter-associated domain AM354_RS08290 170c8529e77ef8977c947d59f2db431d 292 SMART SM00116 78 127 1.4 T 29-03-2018 IPR000644 CBS domain AM354_RS08290 170c8529e77ef8977c947d59f2db431d 292 SMART SM00116 141 189 3.7 T 29-03-2018 IPR000644 CBS domain AM354_RS08290 170c8529e77ef8977c947d59f2db431d 292 SUPERFAMILY SSF56176 203 289 3.54E-24 T 29-03-2018 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AM354_RS08290 170c8529e77ef8977c947d59f2db431d 292 Pfam PF03471 Transporter associated domain 206 281 4.9E-22 T 29-03-2018 IPR005170 Transporter-associated domain AM354_RS11760 6128c5c527d5a776d4aec679fa74027d 315 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 6 16 6.2E-6 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS11760 6128c5c527d5a776d4aec679fa74027d 315 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 16 26 6.2E-6 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS11760 6128c5c527d5a776d4aec679fa74027d 315 TIGRFAM TIGR02405 trehalos_R_Ecol: trehalose operon repressor 4 314 2.8E-149 T 29-03-2018 IPR012771 Trehalose operon repressor GO:0003677|GO:0005991|GO:0045892 AM354_RS11760 6128c5c527d5a776d4aec679fa74027d 315 Pfam PF13377 Periplasmic binding protein-like domain 168 311 1.8E-17 T 29-03-2018 AM354_RS11760 6128c5c527d5a776d4aec679fa74027d 315 SUPERFAMILY SSF47413 3 60 1.19E-16 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS11760 6128c5c527d5a776d4aec679fa74027d 315 Pfam PF00356 Bacterial regulatory proteins, lacI family 6 51 8.8E-21 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS11760 6128c5c527d5a776d4aec679fa74027d 315 SUPERFAMILY SSF53822 63 314 2.69E-60 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS11760 6128c5c527d5a776d4aec679fa74027d 315 SMART SM00354 4 74 2.0E-33 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS11760 6128c5c527d5a776d4aec679fa74027d 315 Gene3D G3DSA:3.40.50.2300 57 173 1.0E-20 T 29-03-2018 AM354_RS11760 6128c5c527d5a776d4aec679fa74027d 315 Gene3D G3DSA:1.10.260.40 5 56 7.1E-22 T 29-03-2018 AM354_RS11760 6128c5c527d5a776d4aec679fa74027d 315 ProSitePatterns PS00356 LacI-type HTH domain signature. 7 25 - T 29-03-2018 AM354_RS11760 6128c5c527d5a776d4aec679fa74027d 315 Gene3D G3DSA:3.40.50.2300 174 304 4.9E-22 T 29-03-2018 AM354_RS05285 a5dfe9a9f37664093e383c522241b0f7 199 Hamap MF_01017 NAD(P)H dehydrogenase (quinone). 1 199 40.074 T 29-03-2018 IPR010089 Flavoprotein WrbA-like GO:0003955|GO:0010181 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 AM354_RS05285 a5dfe9a9f37664093e383c522241b0f7 199 TIGRFAM TIGR01755 flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 2 197 8.8E-98 T 29-03-2018 IPR010089 Flavoprotein WrbA-like GO:0003955|GO:0010181 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 AM354_RS05285 a5dfe9a9f37664093e383c522241b0f7 199 Pfam PF03358 NADPH-dependent FMN reductase 13 142 7.4E-13 T 29-03-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AM354_RS05285 a5dfe9a9f37664093e383c522241b0f7 199 SUPERFAMILY SSF52218 1 198 1.83E-61 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS05285 a5dfe9a9f37664093e383c522241b0f7 199 Gene3D G3DSA:3.40.50.360 2 199 5.7E-51 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS13735 d2e08077af81b35c983cb7575e1f0b5a 689 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 6 551 3.2E-210 T 29-03-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AM354_RS13735 d2e08077af81b35c983cb7575e1f0b5a 689 Gene3D G3DSA:1.10.730.10 574 683 1.4E-11 T 29-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS13735 d2e08077af81b35c983cb7575e1f0b5a 689 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 3 688 26.497 T 29-03-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AM354_RS13735 d2e08077af81b35c983cb7575e1f0b5a 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 318 334 6.7E-37 T 29-03-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AM354_RS13735 d2e08077af81b35c983cb7575e1f0b5a 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 50 62 6.7E-37 T 29-03-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AM354_RS13735 d2e08077af81b35c983cb7575e1f0b5a 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 394 413 6.7E-37 T 29-03-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AM354_RS13735 d2e08077af81b35c983cb7575e1f0b5a 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 246 261 6.7E-37 T 29-03-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AM354_RS13735 d2e08077af81b35c983cb7575e1f0b5a 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 7 20 6.7E-37 T 29-03-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AM354_RS13735 d2e08077af81b35c983cb7575e1f0b5a 689 Pfam PF05746 DALR anticodon binding domain 582 679 2.6E-7 T 29-03-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 AM354_RS13735 d2e08077af81b35c983cb7575e1f0b5a 689 SUPERFAMILY SSF109604 339 539 1.78E-15 T 29-03-2018 AM354_RS13735 d2e08077af81b35c983cb7575e1f0b5a 689 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 1 689 0.0 T 29-03-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AM354_RS21265 6041e1444f62275b832b4ce36c6cc65d 426 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 271 278 - T 29-03-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AM354_RS21265 6041e1444f62275b832b4ce36c6cc65d 426 Pfam PF12404 Peptidase 1 77 8.7E-37 T 29-03-2018 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 AM354_RS21265 6041e1444f62275b832b4ce36c6cc65d 426 SUPERFAMILY SSF53187 103 423 1.13E-105 T 29-03-2018 AM354_RS21265 6041e1444f62275b832b4ce36c6cc65d 426 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 105 417 8.0E-106 T 29-03-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AM354_RS21265 6041e1444f62275b832b4ce36c6cc65d 426 PRINTS PR00481 Cytosol aminopeptidase signature 245 266 2.6E-46 T 29-03-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AM354_RS21265 6041e1444f62275b832b4ce36c6cc65d 426 PRINTS PR00481 Cytosol aminopeptidase signature 208 229 2.6E-46 T 29-03-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AM354_RS21265 6041e1444f62275b832b4ce36c6cc65d 426 PRINTS PR00481 Cytosol aminopeptidase signature 267 287 2.6E-46 T 29-03-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AM354_RS21265 6041e1444f62275b832b4ce36c6cc65d 426 PRINTS PR00481 Cytosol aminopeptidase signature 295 310 2.6E-46 T 29-03-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AM354_RS21265 6041e1444f62275b832b4ce36c6cc65d 426 PRINTS PR00481 Cytosol aminopeptidase signature 186 203 2.6E-46 T 29-03-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AM354_RS21265 6041e1444f62275b832b4ce36c6cc65d 426 PIRSF PIRSF036388 1 426 8.5E-235 T 29-03-2018 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 AM354_RS21265 6041e1444f62275b832b4ce36c6cc65d 426 Hamap MF_00504 Peptidase B [pepB]. 1 423 66.838 T 29-03-2018 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 AM354_RS21265 6041e1444f62275b832b4ce36c6cc65d 426 Gene3D G3DSA:3.40.630.10 89 426 1.4E-116 T 29-03-2018 AM354_RS23780 d71154c9c1c379366fae2b0bbaaea830 393 Pfam PF07687 Peptidase dimerisation domain 187 283 1.3E-11 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain AM354_RS23780 d71154c9c1c379366fae2b0bbaaea830 393 Gene3D G3DSA:3.40.630.10 271 393 5.2E-26 T 29-03-2018 AM354_RS23780 d71154c9c1c379366fae2b0bbaaea830 393 SUPERFAMILY SSF53187 6 199 9.43E-91 T 29-03-2018 AM354_RS23780 d71154c9c1c379366fae2b0bbaaea830 393 SUPERFAMILY SSF53187 300 390 9.43E-91 T 29-03-2018 AM354_RS23780 d71154c9c1c379366fae2b0bbaaea830 393 Pfam PF01546 Peptidase family M20/M25/M40 75 385 3.1E-36 T 29-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AM354_RS23780 d71154c9c1c379366fae2b0bbaaea830 393 PIRSF PIRSF005962 4 391 1.2E-128 T 29-03-2018 IPR017439 Amidohydrolase GO:0016787 AM354_RS23780 d71154c9c1c379366fae2b0bbaaea830 393 Gene3D G3DSA:3.40.630.10 4 270 2.7E-66 T 29-03-2018 AM354_RS23780 d71154c9c1c379366fae2b0bbaaea830 393 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 17 376 8.0E-111 T 29-03-2018 IPR017439 Amidohydrolase GO:0016787 AM354_RS23780 d71154c9c1c379366fae2b0bbaaea830 393 SUPERFAMILY SSF55031 185 298 1.03E-29 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain AM354_RS07305 1b7e95cee6a76dcac74072b4eec89f0b 275 Pfam PF12833 Helix-turn-helix domain 193 270 1.1E-21 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS07305 1b7e95cee6a76dcac74072b4eec89f0b 275 SMART SM00342 187 269 1.3E-26 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS07305 1b7e95cee6a76dcac74072b4eec89f0b 275 SUPERFAMILY SSF46689 170 221 9.21E-13 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS07305 1b7e95cee6a76dcac74072b4eec89f0b 275 Gene3D G3DSA:2.60.120.10 16 178 5.9E-9 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS07305 1b7e95cee6a76dcac74072b4eec89f0b 275 Gene3D G3DSA:1.10.10.60 225 273 5.8E-10 T 29-03-2018 AM354_RS07305 1b7e95cee6a76dcac74072b4eec89f0b 275 SUPERFAMILY SSF46689 223 270 1.75E-8 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS07305 1b7e95cee6a76dcac74072b4eec89f0b 275 Pfam PF02311 AraC-like ligand binding domain 21 146 2.3E-18 T 29-03-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AM354_RS07305 1b7e95cee6a76dcac74072b4eec89f0b 275 Gene3D G3DSA:1.10.10.60 179 224 5.6E-17 T 29-03-2018 AM354_RS07305 1b7e95cee6a76dcac74072b4eec89f0b 275 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 224 265 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM354_RS07305 1b7e95cee6a76dcac74072b4eec89f0b 275 SUPERFAMILY SSF51215 28 152 7.19E-19 T 29-03-2018 AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 Gene3D G3DSA:2.30.38.10 754 836 3.0E-21 T 29-03-2018 AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 SMART SM00823 Phosphopantetheine attachment site 953 1021 0.0022 T 29-03-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 SMART SM00823 Phosphopantetheine attachment site 1994 2063 0.62 T 29-03-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 Gene3D G3DSA:3.40.50.1820 3106 3300 4.3E-12 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 Pfam PF00975 Thioesterase domain 3125 3231 1.1E-15 T 29-03-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 Pfam PF13193 AMP-binding enzyme C-terminal domain 1899 1970 1.5E-9 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 Pfam PF13193 AMP-binding enzyme C-terminal domain 854 927 4.4E-7 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 Gene3D G3DSA:1.10.1200.10 3045 3105 2.3E-12 T 29-03-2018 AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 SUPERFAMILY SSF47336 3033 3103 1.83E-11 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 Pfam PF00550 Phosphopantetheine attachment site 956 1017 5.8E-10 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 Pfam PF00550 Phosphopantetheine attachment site 3042 3104 1.3E-5 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 Pfam PF00550 Phosphopantetheine attachment site 1999 2059 1.5E-8 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 SUPERFAMILY SSF47336 946 1018 2.75E-13 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 2557 2959 3.0E-111 T 29-03-2018 IPR010071 Amino acid adenylation domain AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 469 870 1.7E-115 T 29-03-2018 IPR010071 Amino acid adenylation domain AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1510 1914 5.5E-110 T 29-03-2018 IPR010071 Amino acid adenylation domain AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 Gene3D G3DSA:2.30.38.10 1803 1884 1.8E-23 T 29-03-2018 AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 Gene3D G3DSA:2.30.38.10 2848 2929 9.9E-19 T 29-03-2018 AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 Gene3D G3DSA:1.10.1200.10 960 1014 8.9E-16 T 29-03-2018 AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 Gene3D G3DSA:1.10.1200.10 2000 2059 3.5E-15 T 29-03-2018 AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 SUPERFAMILY SSF52777 180 417 3.89E-20 T 29-03-2018 AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 SUPERFAMILY SSF56801 410 965 1.02E-128 T 29-03-2018 AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 Gene3D G3DSA:3.30.559.10 2 176 1.4E-17 T 29-03-2018 AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 SUPERFAMILY SSF56801 1472 2005 1.96E-130 T 29-03-2018 AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 SUPERFAMILY SSF52777 1040 1210 1.22E-35 T 29-03-2018 AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 SUPERFAMILY SSF53474 3109 3336 2.07E-29 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 SUPERFAMILY SSF56801 2494 3053 2.09E-130 T 29-03-2018 AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 Pfam PF00501 AMP-binding enzyme 2537 2935 2.5E-79 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 Pfam PF00501 AMP-binding enzyme 449 845 1.2E-80 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 Pfam PF00501 AMP-binding enzyme 1491 1890 1.4E-83 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 SUPERFAMILY SSF52777 1215 1463 1.11E-58 T 29-03-2018 AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 Gene3D G3DSA:3.40.50.980 601 753 3.3E-22 T 29-03-2018 AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 Gene3D G3DSA:3.40.50.980 1635 1800 1.8E-33 T 29-03-2018 AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 Gene3D G3DSA:3.40.50.980 2682 2844 3.3E-34 T 29-03-2018 AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 Gene3D G3DSA:3.30.300.30 1886 1999 1.5E-30 T 29-03-2018 AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 Gene3D G3DSA:3.30.300.30 841 959 5.7E-31 T 29-03-2018 AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 Gene3D G3DSA:3.30.300.30 2932 3044 5.3E-30 T 29-03-2018 AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 ProSitePatterns PS00455 Putative AMP-binding domain signature. 595 606 - T 29-03-2018 IPR020845 AMP-binding, conserved site AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 Gene3D G3DSA:3.30.559.10 2060 2280 5.7E-28 T 29-03-2018 AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 Gene3D G3DSA:3.30.559.10 1015 1238 2.7E-28 T 29-03-2018 AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 SUPERFAMILY SSF52777 8 165 6.34E-19 T 29-03-2018 AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 SUPERFAMILY SSF52777 2081 2255 2.33E-29 T 29-03-2018 AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 ProSitePatterns PS00455 Putative AMP-binding domain signature. 2676 2687 - T 29-03-2018 IPR020845 AMP-binding, conserved site AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 Pfam PF00668 Condensation domain 2076 2513 2.3E-78 T 29-03-2018 IPR001242 Condensation domain AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 Pfam PF00668 Condensation domain 1037 1467 3.2E-93 T 29-03-2018 IPR001242 Condensation domain AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 Pfam PF00668 Condensation domain 16 415 6.4E-25 T 29-03-2018 IPR001242 Condensation domain AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 SUPERFAMILY SSF47336 1987 2059 1.83E-13 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 ProSitePatterns PS00012 Phosphopantetheine attachment site. 976 991 - T 29-03-2018 IPR006162 Phosphopantetheine attachment site AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 Gene3D G3DSA:3.40.50.980 2528 2681 9.4E-32 T 29-03-2018 AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 Gene3D G3DSA:3.40.50.980 439 600 1.1E-40 T 29-03-2018 AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 Gene3D G3DSA:3.40.50.980 1481 1634 1.3E-31 T 29-03-2018 AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1629 1640 - T 29-03-2018 IPR020845 AMP-binding, conserved site AM354_RS24575 f7b0abfa567ce5fa40ea1b3e9160846e 3338 SUPERFAMILY SSF52777 2262 2501 1.33E-51 T 29-03-2018 AM354_RS01180 e62d5b4f4c5054ca34f2887868f7cc82 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 295 1.6E-23 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS01180 e62d5b4f4c5054ca34f2887868f7cc82 296 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 14 66 2.8E-9 T 29-03-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AM354_RS01180 e62d5b4f4c5054ca34f2887868f7cc82 296 Gene3D G3DSA:1.10.3720.10 15 285 4.6E-29 T 29-03-2018 AM354_RS01180 e62d5b4f4c5054ca34f2887868f7cc82 296 SUPERFAMILY SSF161098 90 277 7.19E-22 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS24435 9623cfb637e237325df29f45891bb90d 310 Gene3D G3DSA:1.10.10.10 1 95 9.9E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS24435 9623cfb637e237325df29f45891bb90d 310 Pfam PF03466 LysR substrate binding domain 102 304 1.1E-25 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS24435 9623cfb637e237325df29f45891bb90d 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 39 1.8E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS24435 9623cfb637e237325df29f45891bb90d 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 49 1.8E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS24435 9623cfb637e237325df29f45891bb90d 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 49 60 1.8E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS24435 9623cfb637e237325df29f45891bb90d 310 Gene3D G3DSA:3.40.190.10 193 275 2.0E-9 T 29-03-2018 AM354_RS24435 9623cfb637e237325df29f45891bb90d 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 71 4.1E-18 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS24435 9623cfb637e237325df29f45891bb90d 310 SUPERFAMILY SSF46785 10 119 2.5E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS24435 9623cfb637e237325df29f45891bb90d 310 Gene3D G3DSA:3.40.190.10 96 192 1.2E-17 T 29-03-2018 AM354_RS24435 9623cfb637e237325df29f45891bb90d 310 SUPERFAMILY SSF53850 102 305 1.55E-29 T 29-03-2018 AM354_RS13875 416a808f4fc13ba68768cf7d39153fcd 46 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 3.6E-27 T 29-03-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS13875 416a808f4fc13ba68768cf7d39153fcd 46 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 16.163 T 29-03-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS13875 416a808f4fc13ba68768cf7d39153fcd 46 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 29-03-2018 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS13875 416a808f4fc13ba68768cf7d39153fcd 46 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 31 4.0E-11 T 29-03-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS13875 416a808f4fc13ba68768cf7d39153fcd 46 Pfam PF00468 Ribosomal protein L34 1 44 1.7E-24 T 29-03-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS15255 57dcf33cd344a7fc1b57c2e95d99a351 1357 SMART SM00823 Phosphopantetheine attachment site 1011 1080 1.4E-4 T 29-03-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 AM354_RS15255 57dcf33cd344a7fc1b57c2e95d99a351 1357 SUPERFAMILY SSF52777 233 479 9.12E-53 T 29-03-2018 AM354_RS15255 57dcf33cd344a7fc1b57c2e95d99a351 1357 SUPERFAMILY SSF53474 1077 1356 1.45E-49 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS15255 57dcf33cd344a7fc1b57c2e95d99a351 1357 SUPERFAMILY SSF56801 469 1022 6.93E-132 T 29-03-2018 AM354_RS15255 57dcf33cd344a7fc1b57c2e95d99a351 1357 Pfam PF00975 Thioesterase domain 1100 1350 4.8E-28 T 29-03-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 AM354_RS15255 57dcf33cd344a7fc1b57c2e95d99a351 1357 Pfam PF00501 AMP-binding enzyme 509 905 2.9E-79 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM354_RS15255 57dcf33cd344a7fc1b57c2e95d99a351 1357 Gene3D G3DSA:3.40.50.980 502 651 3.8E-38 T 29-03-2018 AM354_RS15255 57dcf33cd344a7fc1b57c2e95d99a351 1357 Gene3D G3DSA:2.30.38.10 816 898 4.3E-20 T 29-03-2018 AM354_RS15255 57dcf33cd344a7fc1b57c2e95d99a351 1357 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 531 929 2.3E-112 T 29-03-2018 IPR010071 Amino acid adenylation domain AM354_RS15255 57dcf33cd344a7fc1b57c2e95d99a351 1357 Gene3D G3DSA:3.40.50.980 652 808 7.9E-30 T 29-03-2018 AM354_RS15255 57dcf33cd344a7fc1b57c2e95d99a351 1357 SUPERFAMILY SSF52777 50 227 6.08E-36 T 29-03-2018 AM354_RS15255 57dcf33cd344a7fc1b57c2e95d99a351 1357 Gene3D G3DSA:1.10.1200.10 1017 1083 2.6E-18 T 29-03-2018 AM354_RS15255 57dcf33cd344a7fc1b57c2e95d99a351 1357 Pfam PF00668 Condensation domain 44 491 7.0E-93 T 29-03-2018 IPR001242 Condensation domain AM354_RS15255 57dcf33cd344a7fc1b57c2e95d99a351 1357 Gene3D G3DSA:3.40.50.1820 1089 1357 8.5E-24 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS15255 57dcf33cd344a7fc1b57c2e95d99a351 1357 Gene3D G3DSA:3.30.559.10 21 251 2.5E-28 T 29-03-2018 AM354_RS15255 57dcf33cd344a7fc1b57c2e95d99a351 1357 ProSitePatterns PS00455 Putative AMP-binding domain signature. 646 657 - T 29-03-2018 IPR020845 AMP-binding, conserved site AM354_RS15255 57dcf33cd344a7fc1b57c2e95d99a351 1357 Gene3D G3DSA:3.30.300.30 900 1016 6.2E-30 T 29-03-2018 AM354_RS15255 57dcf33cd344a7fc1b57c2e95d99a351 1357 Pfam PF13193 AMP-binding enzyme C-terminal domain 913 986 2.3E-7 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain AM354_RS15255 57dcf33cd344a7fc1b57c2e95d99a351 1357 Pfam PF00550 Phosphopantetheine attachment site 1013 1076 1.7E-14 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS15255 57dcf33cd344a7fc1b57c2e95d99a351 1357 SUPERFAMILY SSF47336 1004 1076 1.7E-16 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS06020 ef27d12d469e51734c87060d96bebcc3 226 PIRSF PIRSF001357 1 224 3.3E-72 T 29-03-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AM354_RS06020 ef27d12d469e51734c87060d96bebcc3 226 SUPERFAMILY SSF51569 5 218 1.36E-77 T 29-03-2018 AM354_RS06020 ef27d12d469e51734c87060d96bebcc3 226 Gene3D G3DSA:3.20.20.70 1 225 1.3E-91 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS06020 ef27d12d469e51734c87060d96bebcc3 226 Hamap MF_00114 Deoxyribose-phosphate aldolase [deoC]. 6 220 34.919 T 29-03-2018 IPR028581 Deoxyribose-phosphate aldolase type I GO:0004139 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180 AM354_RS06020 ef27d12d469e51734c87060d96bebcc3 226 SMART SM01133 7 218 6.2E-93 T 29-03-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AM354_RS06020 ef27d12d469e51734c87060d96bebcc3 226 Pfam PF01791 DeoC/LacD family aldolase 11 215 3.1E-17 T 29-03-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AM354_RS06020 ef27d12d469e51734c87060d96bebcc3 226 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 8 216 5.7E-82 T 29-03-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AM354_RS04485 ba19ea1de19c754ae32a6de1d6d21aa8 791 Gene3D G3DSA:1.50.10.10 304 791 1.7E-97 T 29-03-2018 AM354_RS04485 ba19ea1de19c754ae32a6de1d6d21aa8 791 SUPERFAMILY SSF48208 293 539 2.65E-82 T 29-03-2018 IPR008928 Six-hairpin glycosidase-like GO:0003824 AM354_RS04485 ba19ea1de19c754ae32a6de1d6d21aa8 791 SUPERFAMILY SSF48208 567 787 2.65E-82 T 29-03-2018 IPR008928 Six-hairpin glycosidase-like GO:0003824 AM354_RS04485 ba19ea1de19c754ae32a6de1d6d21aa8 791 Gene3D G3DSA:2.70.98.50 35 263 7.6E-80 T 29-03-2018 AM354_RS04485 ba19ea1de19c754ae32a6de1d6d21aa8 791 Gene3D G3DSA:1.10.287.100 265 302 7.0E-16 T 29-03-2018 AM354_RS04485 ba19ea1de19c754ae32a6de1d6d21aa8 791 Pfam PF01204 Trehalase 583 770 4.8E-7 T 29-03-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 AM354_RS15325 15ec78692553c4602a3d22500454d347 225 SMART SM00382 32 214 7.5E-12 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS15325 15ec78692553c4602a3d22500454d347 225 Gene3D G3DSA:3.40.50.300 1 224 3.2E-59 T 29-03-2018 AM354_RS15325 15ec78692553c4602a3d22500454d347 225 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS15325 15ec78692553c4602a3d22500454d347 225 SUPERFAMILY SSF52540 6 212 3.31E-54 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS15325 15ec78692553c4602a3d22500454d347 225 Pfam PF00005 ABC transporter 23 166 5.3E-31 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS10090 4e409416d834e70b78861f5d6c2f58a7 182 Pfam PF01782 RimM N-terminal domain 16 96 6.0E-25 T 29-03-2018 IPR002676 RimM protein GO:0006364 AM354_RS10090 4e409416d834e70b78861f5d6c2f58a7 182 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 13 182 24.08 T 29-03-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 AM354_RS10090 4e409416d834e70b78861f5d6c2f58a7 182 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 14 182 1.5E-58 T 29-03-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 AM354_RS10090 4e409416d834e70b78861f5d6c2f58a7 182 Gene3D G3DSA:2.30.30.240 102 177 1.1E-21 T 29-03-2018 AM354_RS10090 4e409416d834e70b78861f5d6c2f58a7 182 Gene3D G3DSA:2.40.30.60 13 100 8.2E-26 T 29-03-2018 IPR002676 RimM protein GO:0006364 AM354_RS10090 4e409416d834e70b78861f5d6c2f58a7 182 SUPERFAMILY SSF50346 106 182 2.55E-19 T 29-03-2018 IPR011033 PRC-barrel-like AM354_RS10090 4e409416d834e70b78861f5d6c2f58a7 182 Pfam PF05239 PRC-barrel domain 104 174 6.6E-9 T 29-03-2018 IPR027275 PRC-barrel domain AM354_RS10090 4e409416d834e70b78861f5d6c2f58a7 182 SUPERFAMILY SSF50447 14 100 7.06E-24 T 29-03-2018 IPR009000 Translation protein, beta-barrel domain AM354_RS05170 197462bbe9cd374e1519a497efdd4cc2 315 SUPERFAMILY SSF54506 9 314 1.41E-93 T 29-03-2018 AM354_RS05170 197462bbe9cd374e1519a497efdd4cc2 315 PIRSF PIRSF029792 5 315 2.2E-92 T 29-03-2018 IPR008794 Proline racemase family AM354_RS05170 197462bbe9cd374e1519a497efdd4cc2 315 Gene3D G3DSA:3.10.310.10 7 147 1.2E-30 T 29-03-2018 AM354_RS05170 197462bbe9cd374e1519a497efdd4cc2 315 Gene3D G3DSA:3.10.310.10 148 292 2.6E-45 T 29-03-2018 AM354_RS05170 197462bbe9cd374e1519a497efdd4cc2 315 Pfam PF05544 Proline racemase 13 314 1.4E-94 T 29-03-2018 IPR008794 Proline racemase family AM354_RS11510 8e2699b3c36408124159f97855cc0272 360 Pfam PF00267 Gram-negative porin 26 360 5.4E-113 T 29-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM354_RS11510 8e2699b3c36408124159f97855cc0272 360 SUPERFAMILY SSF56935 21 360 1.23E-69 T 29-03-2018 AM354_RS11510 8e2699b3c36408124159f97855cc0272 360 Gene3D G3DSA:2.40.160.10 31 360 8.8E-48 T 29-03-2018 AM354_RS11510 8e2699b3c36408124159f97855cc0272 360 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 51 62 5.6E-8 T 29-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM354_RS11510 8e2699b3c36408124159f97855cc0272 360 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 95 105 5.6E-8 T 29-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM354_RS11510 8e2699b3c36408124159f97855cc0272 360 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 315 332 5.6E-8 T 29-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM354_RS11510 8e2699b3c36408124159f97855cc0272 360 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 233 245 5.6E-8 T 29-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM354_RS11510 8e2699b3c36408124159f97855cc0272 360 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 152 163 5.6E-8 T 29-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM354_RS11510 8e2699b3c36408124159f97855cc0272 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 239 256 3.3E-49 T 29-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM354_RS11510 8e2699b3c36408124159f97855cc0272 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 271 290 3.3E-49 T 29-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM354_RS11510 8e2699b3c36408124159f97855cc0272 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 150 172 3.3E-49 T 29-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM354_RS11510 8e2699b3c36408124159f97855cc0272 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 50 68 3.3E-49 T 29-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM354_RS11510 8e2699b3c36408124159f97855cc0272 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 95 117 3.3E-49 T 29-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM354_RS11510 8e2699b3c36408124159f97855cc0272 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 21 37 3.3E-49 T 29-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM354_RS15650 d7c04dbef75199e3510118c224017bb3 292 Gene3D G3DSA:3.90.1280.10 226 281 6.4E-24 T 29-03-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 AM354_RS15650 d7c04dbef75199e3510118c224017bb3 292 SUPERFAMILY SSF64397 4 232 1.44E-78 T 29-03-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 AM354_RS15650 d7c04dbef75199e3510118c224017bb3 292 Pfam PF01430 Hsp33 protein 5 273 1.8E-87 T 29-03-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 AM354_RS15650 d7c04dbef75199e3510118c224017bb3 292 Hamap MF_00117 33 kDa chaperonin [hslO]. 4 284 33.344 T 29-03-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 AM354_RS15650 d7c04dbef75199e3510118c224017bb3 292 Gene3D G3DSA:1.10.287.480 181 225 3.5E-19 T 29-03-2018 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain AM354_RS15650 d7c04dbef75199e3510118c224017bb3 292 PIRSF PIRSF005261 1 283 5.0E-75 T 29-03-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 AM354_RS15650 d7c04dbef75199e3510118c224017bb3 292 SUPERFAMILY SSF118352 225 282 6.67E-21 T 29-03-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 AM354_RS15650 d7c04dbef75199e3510118c224017bb3 292 Gene3D G3DSA:3.55.30.10 1 176 2.7E-63 T 29-03-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 AM354_RS00935 0ce67c7e96019b7ccbe9c751d063fa6b 266 Gene3D G3DSA:3.40.50.720 15 57 8.0E-6 T 29-03-2018 AM354_RS00935 0ce67c7e96019b7ccbe9c751d063fa6b 266 Gene3D G3DSA:3.40.50.720 58 266 1.3E-64 T 29-03-2018 AM354_RS00935 0ce67c7e96019b7ccbe9c751d063fa6b 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 24 41 6.1E-36 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS00935 0ce67c7e96019b7ccbe9c751d063fa6b 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 191 6.1E-36 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS00935 0ce67c7e96019b7ccbe9c751d063fa6b 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 98 109 6.1E-36 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS00935 0ce67c7e96019b7ccbe9c751d063fa6b 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 162 6.1E-36 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS00935 0ce67c7e96019b7ccbe9c751d063fa6b 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 193 210 6.1E-36 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS00935 0ce67c7e96019b7ccbe9c751d063fa6b 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 227 247 6.1E-36 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS00935 0ce67c7e96019b7ccbe9c751d063fa6b 266 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 32 264 4.2E-64 T 29-03-2018 AM354_RS00935 0ce67c7e96019b7ccbe9c751d063fa6b 266 SUPERFAMILY SSF51735 22 265 7.21E-76 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS00935 0ce67c7e96019b7ccbe9c751d063fa6b 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 172 191 2.5E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS00935 0ce67c7e96019b7ccbe9c751d063fa6b 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 98 109 2.5E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS00935 0ce67c7e96019b7ccbe9c751d063fa6b 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 160 2.5E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS00935 0ce67c7e96019b7ccbe9c751d063fa6b 266 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 159 187 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM354_RS20985 a02b5d7329c296788268ca26eed636ba 440 SMART SM00490 262 343 6.0E-29 T 29-03-2018 IPR001650 Helicase, C-terminal AM354_RS20985 a02b5d7329c296788268ca26eed636ba 440 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 155 163 - T 29-03-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site AM354_RS20985 a02b5d7329c296788268ca26eed636ba 440 Gene3D G3DSA:3.40.50.300 1 224 1.9E-57 T 29-03-2018 AM354_RS20985 a02b5d7329c296788268ca26eed636ba 440 Pfam PF00271 Helicase conserved C-terminal domain 235 343 1.1E-27 T 29-03-2018 IPR001650 Helicase, C-terminal AM354_RS20985 a02b5d7329c296788268ca26eed636ba 440 Pfam PF00270 DEAD/DEAH box helicase 28 196 1.2E-45 T 29-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AM354_RS20985 a02b5d7329c296788268ca26eed636ba 440 Gene3D G3DSA:3.40.50.300 225 388 8.6E-43 T 29-03-2018 AM354_RS20985 a02b5d7329c296788268ca26eed636ba 440 SMART SM00487 23 223 1.0E-57 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AM354_RS20985 a02b5d7329c296788268ca26eed636ba 440 SUPERFAMILY SSF52540 35 354 4.3E-66 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS20985 a02b5d7329c296788268ca26eed636ba 440 Hamap MF_00967 ATP-dependent RNA helicase SrmB [srmB]. 4 427 49.52 T 29-03-2018 IPR028621 ATP-dependent RNA helicase SrmB GO:0000027|GO:0004004 AM354_RS25615 8e7c042d9e418554fa164507067fd9fa 280 Gene3D G3DSA:3.40.50.300 4 274 1.2E-57 T 29-03-2018 AM354_RS25615 8e7c042d9e418554fa164507067fd9fa 280 Pfam PF00005 ABC transporter 29 184 3.7E-23 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS25615 8e7c042d9e418554fa164507067fd9fa 280 SUPERFAMILY SSF52540 21 246 3.06E-53 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS25615 8e7c042d9e418554fa164507067fd9fa 280 SMART SM00382 34 233 1.6E-11 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS12895 5bd4de729304eb3333ace37745f1effb 340 PIRSF PIRSF001415 2 336 1.4E-151 T 29-03-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AM354_RS12895 5bd4de729304eb3333ace37745f1effb 340 SMART SM01004 9 333 8.7E-239 T 29-03-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AM354_RS12895 5bd4de729304eb3333ace37745f1effb 340 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 252 264 - T 29-03-2018 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AM354_RS12895 5bd4de729304eb3333ace37745f1effb 340 Gene3D G3DSA:3.20.20.70 2 337 1.5E-150 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS12895 5bd4de729304eb3333ace37745f1effb 340 Pfam PF00490 Delta-aminolevulinic acid dehydratase 12 332 3.7E-139 T 29-03-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AM354_RS12895 5bd4de729304eb3333ace37745f1effb 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 160 179 9.7E-57 T 29-03-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AM354_RS12895 5bd4de729304eb3333ace37745f1effb 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 198 217 9.7E-57 T 29-03-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AM354_RS12895 5bd4de729304eb3333ace37745f1effb 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 129 143 9.7E-57 T 29-03-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AM354_RS12895 5bd4de729304eb3333ace37745f1effb 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 307 326 9.7E-57 T 29-03-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AM354_RS12895 5bd4de729304eb3333ace37745f1effb 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 252 268 9.7E-57 T 29-03-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AM354_RS12895 5bd4de729304eb3333ace37745f1effb 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 277 292 9.7E-57 T 29-03-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AM354_RS12895 5bd4de729304eb3333ace37745f1effb 340 SUPERFAMILY SSF51569 7 335 4.54E-143 T 29-03-2018 AM354_RS14035 c3d022f322b2ad0326ba39cd6b6e2ad7 629 Gene3D G3DSA:1.10.10.10 536 629 0.07 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS14035 c3d022f322b2ad0326ba39cd6b6e2ad7 629 SMART SM01228 546 617 9.3E-45 T 29-03-2018 AM354_RS14035 c3d022f322b2ad0326ba39cd6b6e2ad7 629 Gene3D G3DSA:3.50.50.60 5 264 7.2E-77 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS14035 c3d022f322b2ad0326ba39cd6b6e2ad7 629 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 7 622 1.5E-297 T 29-03-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 AM354_RS14035 c3d022f322b2ad0326ba39cd6b6e2ad7 629 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 273 287 - T 29-03-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 AM354_RS14035 c3d022f322b2ad0326ba39cd6b6e2ad7 629 SUPERFAMILY SSF51905 97 261 3.11E-51 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS14035 c3d022f322b2ad0326ba39cd6b6e2ad7 629 SUPERFAMILY SSF51905 6 66 3.11E-51 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS14035 c3d022f322b2ad0326ba39cd6b6e2ad7 629 Pfam PF13932 GidA associated domain 403 616 5.7E-76 T 29-03-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 AM354_RS14035 c3d022f322b2ad0326ba39cd6b6e2ad7 629 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 368 391 - T 29-03-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 AM354_RS14035 c3d022f322b2ad0326ba39cd6b6e2ad7 629 Pfam PF01134 Glucose inhibited division protein A 8 398 2.1E-168 T 29-03-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 AM354_RS14035 c3d022f322b2ad0326ba39cd6b6e2ad7 629 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 5 624 42.687 T 29-03-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 AM354_RS21580 36c9d5d7b5572d0909f76c609081f461 171 Pfam PF13957 Toxin YafO, type II toxin-antitoxin system 36 146 7.2E-8 T 29-03-2018 IPR020353 mRNA interferase toxin YafO AM354_RS11695 f80c0224d32a4245e54f96a42857e774 958 SUPERFAMILY SSF46589 891 955 1.62E-15 T 29-03-2018 IPR010978 tRNA-binding arm GO:0000166 AM354_RS11695 f80c0224d32a4245e54f96a42857e774 958 SUPERFAMILY SSF50677 198 372 6.02E-56 T 29-03-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AM354_RS11695 f80c0224d32a4245e54f96a42857e774 958 SUPERFAMILY SSF47323 649 906 4.3E-71 T 29-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS11695 f80c0224d32a4245e54f96a42857e774 958 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 21 638 1.2E-230 T 29-03-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS11695 f80c0224d32a4245e54f96a42857e774 958 Pfam PF08264 Anticodon-binding domain of tRNA 681 832 6.3E-45 T 29-03-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 AM354_RS11695 f80c0224d32a4245e54f96a42857e774 958 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 49 60 - T 29-03-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS11695 f80c0224d32a4245e54f96a42857e774 958 TIGRFAM TIGR00422 valS: valine--tRNA ligase 10 937 0.0 T 29-03-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AM354_RS11695 f80c0224d32a4245e54f96a42857e774 958 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 891 952 2.2E-18 T 29-03-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 AM354_RS11695 f80c0224d32a4245e54f96a42857e774 958 Gene3D G3DSA:1.10.730.10 638 823 2.1E-56 T 29-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS11695 f80c0224d32a4245e54f96a42857e774 958 Gene3D G3DSA:3.40.50.620 9 637 1.5E-133 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS11695 f80c0224d32a4245e54f96a42857e774 958 PRINTS PR00986 Valyl-tRNA synthetase signature 376 389 1.3E-35 T 29-03-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AM354_RS11695 f80c0224d32a4245e54f96a42857e774 958 PRINTS PR00986 Valyl-tRNA synthetase signature 507 525 1.3E-35 T 29-03-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AM354_RS11695 f80c0224d32a4245e54f96a42857e774 958 PRINTS PR00986 Valyl-tRNA synthetase signature 476 497 1.3E-35 T 29-03-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AM354_RS11695 f80c0224d32a4245e54f96a42857e774 958 PRINTS PR00986 Valyl-tRNA synthetase signature 42 53 1.3E-35 T 29-03-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AM354_RS11695 f80c0224d32a4245e54f96a42857e774 958 PRINTS PR00986 Valyl-tRNA synthetase signature 243 260 1.3E-35 T 29-03-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AM354_RS11695 f80c0224d32a4245e54f96a42857e774 958 Hamap MF_02004 Valine--tRNA ligase [valS]. 8 956 16.163 T 29-03-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AM354_RS11695 f80c0224d32a4245e54f96a42857e774 958 Gene3D G3DSA:1.10.287.380 884 954 3.2E-24 T 29-03-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 AM354_RS11695 f80c0224d32a4245e54f96a42857e774 958 SUPERFAMILY SSF52374 616 648 1.81E-135 T 29-03-2018 AM354_RS11695 f80c0224d32a4245e54f96a42857e774 958 SUPERFAMILY SSF52374 371 578 1.81E-135 T 29-03-2018 AM354_RS11695 f80c0224d32a4245e54f96a42857e774 958 SUPERFAMILY SSF52374 9 199 1.81E-135 T 29-03-2018 AM354_RS02555 c5bca03bcc2fb5cda296c2d83af476bd 740 Gene3D G3DSA:3.30.365.10 331 433 1.7E-22 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS02555 c5bca03bcc2fb5cda296c2d83af476bd 740 Gene3D G3DSA:3.30.365.10 594 729 1.7E-25 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS02555 c5bca03bcc2fb5cda296c2d83af476bd 740 Gene3D G3DSA:3.90.1170.50 193 330 1.1E-29 T 29-03-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AM354_RS02555 c5bca03bcc2fb5cda296c2d83af476bd 740 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 316 557 1.4E-20 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS02555 c5bca03bcc2fb5cda296c2d83af476bd 740 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 591 680 6.8E-13 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS02555 c5bca03bcc2fb5cda296c2d83af476bd 740 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 47 179 9.0E-14 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS02555 c5bca03bcc2fb5cda296c2d83af476bd 740 SUPERFAMILY SSF56003 45 249 2.16E-38 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS02555 c5bca03bcc2fb5cda296c2d83af476bd 740 SUPERFAMILY SSF56003 317 715 3.4E-94 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS02555 c5bca03bcc2fb5cda296c2d83af476bd 740 Gene3D G3DSA:3.30.365.10 434 593 4.9E-29 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS02555 c5bca03bcc2fb5cda296c2d83af476bd 740 SMART SM01008 216 294 6.7E-16 T 29-03-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AM354_RS02555 c5bca03bcc2fb5cda296c2d83af476bd 740 Gene3D G3DSA:3.30.365.10 29 192 3.3E-37 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS02555 c5bca03bcc2fb5cda296c2d83af476bd 740 PIRSF PIRSF036389 1 732 2.7E-221 T 29-03-2018 IPR012368 Oxidoreductase molybdopterin-binding subunit, IorB-related AM354_RS22930 c1710bde892772f594c076150e20fbe3 472 SMART SM00304 194 246 2.5E-4 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM354_RS22930 c1710bde892772f594c076150e20fbe3 472 Gene3D G3DSA:1.10.287.130 237 308 4.5E-8 T 29-03-2018 AM354_RS22930 c1710bde892772f594c076150e20fbe3 472 SMART SM00388 247 312 6.6E-10 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS22930 c1710bde892772f594c076150e20fbe3 472 SMART SM00387 359 472 7.2E-22 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS22930 c1710bde892772f594c076150e20fbe3 472 Pfam PF08521 Two-component sensor kinase N-terminal 22 170 8.8E-41 T 29-03-2018 IPR013727 Two-component sensor kinase, N-terminal AM354_RS22930 c1710bde892772f594c076150e20fbe3 472 SUPERFAMILY SSF47384 230 312 7.26E-14 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS22930 c1710bde892772f594c076150e20fbe3 472 Gene3D G3DSA:3.30.565.10 316 470 2.2E-24 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS22930 c1710bde892772f594c076150e20fbe3 472 SUPERFAMILY SSF55874 316 470 2.36E-26 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS22930 c1710bde892772f594c076150e20fbe3 472 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 363 453 1.4E-11 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS22930 c1710bde892772f594c076150e20fbe3 472 Pfam PF00512 His Kinase A (phospho-acceptor) domain 248 311 3.6E-8 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS08425 93e68c89387b5713f3c0cdae5295164e 69 Pfam PF00313 'Cold-shock' DNA-binding domain 5 68 2.8E-33 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM354_RS08425 93e68c89387b5713f3c0cdae5295164e 69 Gene3D G3DSA:2.40.50.140 4 69 3.6E-29 T 29-03-2018 AM354_RS08425 93e68c89387b5713f3c0cdae5295164e 69 PRINTS PR00050 Cold shock protein signature 27 36 1.4E-18 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM354_RS08425 93e68c89387b5713f3c0cdae5295164e 69 PRINTS PR00050 Cold shock protein signature 6 21 1.4E-18 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM354_RS08425 93e68c89387b5713f3c0cdae5295164e 69 PRINTS PR00050 Cold shock protein signature 42 60 1.4E-18 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM354_RS08425 93e68c89387b5713f3c0cdae5295164e 69 SMART SM00357 5 69 1.2E-33 T 29-03-2018 IPR011129 Cold shock domain GO:0003676 AM354_RS08425 93e68c89387b5713f3c0cdae5295164e 69 PIRSF PIRSF002599 1 69 8.2E-26 T 29-03-2018 IPR012156 Cold shock, CspA GO:0003676 AM354_RS08425 93e68c89387b5713f3c0cdae5295164e 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 17 36 - T 29-03-2018 IPR019844 Cold-shock conserved site AM354_RS08425 93e68c89387b5713f3c0cdae5295164e 69 SUPERFAMILY SSF50249 3 68 7.5E-26 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS17350 18fddb84c855761838323254a9ad1acc 366 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 150 178 - T 29-03-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AM354_RS17350 18fddb84c855761838323254a9ad1acc 366 Pfam PF00465 Iron-containing alcohol dehydrogenase 8 346 5.5E-64 T 29-03-2018 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 AM354_RS17350 18fddb84c855761838323254a9ad1acc 366 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 241 261 - T 29-03-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AM354_RS17350 18fddb84c855761838323254a9ad1acc 366 SUPERFAMILY SSF56796 2 356 3.53E-88 T 29-03-2018 AM354_RS17350 18fddb84c855761838323254a9ad1acc 366 Gene3D G3DSA:3.40.50.1970 2 159 4.0E-30 T 29-03-2018 AM354_RS17350 18fddb84c855761838323254a9ad1acc 366 Gene3D G3DSA:1.20.1090.10 160 363 9.6E-40 T 29-03-2018 AM354_RS17350 18fddb84c855761838323254a9ad1acc 366 PIRSF PIRSF000112 1 360 1.3E-91 T 29-03-2018 AM354_RS22745 dc89e89b37f9fed03614286f243f09c2 155 Pfam PF03918 Cytochrome C biogenesis protein 7 147 4.9E-57 T 29-03-2018 IPR005616 CcmH/CycL/Ccl2/NrfF family AM354_RS05175 3046b02f826bafea4ae8544f08df1f69 284 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 234 275 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM354_RS05175 3046b02f826bafea4ae8544f08df1f69 284 SUPERFAMILY SSF46689 233 279 2.82E-12 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS05175 3046b02f826bafea4ae8544f08df1f69 284 Gene3D G3DSA:1.10.10.60 182 233 3.5E-9 T 29-03-2018 AM354_RS05175 3046b02f826bafea4ae8544f08df1f69 284 Pfam PF08448 PAS fold 62 174 2.7E-19 T 29-03-2018 IPR013656 PAS fold-4 AM354_RS05175 3046b02f826bafea4ae8544f08df1f69 284 SUPERFAMILY SSF55785 48 166 1.74E-9 T 29-03-2018 IPR000014 PAS domain AM354_RS05175 3046b02f826bafea4ae8544f08df1f69 284 SMART SM00342 197 279 1.7E-23 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS05175 3046b02f826bafea4ae8544f08df1f69 284 Gene3D G3DSA:3.30.450.20 38 181 2.0E-10 T 29-03-2018 AM354_RS05175 3046b02f826bafea4ae8544f08df1f69 284 Pfam PF12833 Helix-turn-helix domain 205 279 4.7E-22 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS05175 3046b02f826bafea4ae8544f08df1f69 284 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 263 279 1.7E-6 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM354_RS05175 3046b02f826bafea4ae8544f08df1f69 284 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 248 263 1.7E-6 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM354_RS05175 3046b02f826bafea4ae8544f08df1f69 284 Gene3D G3DSA:1.10.10.60 234 284 8.4E-14 T 29-03-2018 AM354_RS11155 2b4506b4debd0752f572db4543c1eb4e 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 2.1E-8 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS11155 2b4506b4debd0752f572db4543c1eb4e 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 2.1E-8 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS11155 2b4506b4debd0752f572db4543c1eb4e 198 Gene3D G3DSA:1.10.10.60 1 50 3.5E-17 T 29-03-2018 AM354_RS11155 2b4506b4debd0752f572db4543c1eb4e 198 Gene3D G3DSA:1.10.357.10 82 198 3.8E-9 T 29-03-2018 AM354_RS11155 2b4506b4debd0752f572db4543c1eb4e 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 63 7.4E-15 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS11155 2b4506b4debd0752f572db4543c1eb4e 198 SUPERFAMILY SSF46689 3 87 1.33E-18 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS11155 2b4506b4debd0752f572db4543c1eb4e 198 Gene3D G3DSA:1.10.10.60 51 81 1.4E-10 T 29-03-2018 AM354_RS22350 1dd58aa175e7ef024b944694e842a570 322 Pfam PF00665 Integrase core domain 171 273 9.4E-10 T 29-03-2018 IPR001584 Integrase, catalytic core GO:0015074 AM354_RS22350 1dd58aa175e7ef024b944694e842a570 322 Gene3D G3DSA:1.10.10.10 64 153 0.0055 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS22350 1dd58aa175e7ef024b944694e842a570 322 ProSitePatterns PS01043 Transposases, IS30 family, signature. 260 276 - T 29-03-2018 IPR001598 Transposase, IS30, conserved site GO:0003677|GO:0004803|GO:0006313 AM354_RS22350 1dd58aa175e7ef024b944694e842a570 322 SUPERFAMILY SSF46689 4 115 5.02E-7 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS22350 1dd58aa175e7ef024b944694e842a570 322 Gene3D G3DSA:3.30.420.10 154 322 6.4E-20 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS22350 1dd58aa175e7ef024b944694e842a570 322 SUPERFAMILY SSF53098 169 316 1.26E-22 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS22350 1dd58aa175e7ef024b944694e842a570 322 Gene3D G3DSA:1.10.10.60 3 47 2.8E-13 T 29-03-2018 AM354_RS22350 1dd58aa175e7ef024b944694e842a570 322 Pfam PF13936 Helix-turn-helix domain 2 45 6.8E-16 T 29-03-2018 IPR025246 Transposase IS30-like HTH domain AM354_RS18580 1dd58aa175e7ef024b944694e842a570 322 Pfam PF00665 Integrase core domain 171 273 9.4E-10 T 29-03-2018 IPR001584 Integrase, catalytic core GO:0015074 AM354_RS18580 1dd58aa175e7ef024b944694e842a570 322 Gene3D G3DSA:1.10.10.10 64 153 0.0055 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS18580 1dd58aa175e7ef024b944694e842a570 322 ProSitePatterns PS01043 Transposases, IS30 family, signature. 260 276 - T 29-03-2018 IPR001598 Transposase, IS30, conserved site GO:0003677|GO:0004803|GO:0006313 AM354_RS18580 1dd58aa175e7ef024b944694e842a570 322 SUPERFAMILY SSF46689 4 115 5.02E-7 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS18580 1dd58aa175e7ef024b944694e842a570 322 Gene3D G3DSA:3.30.420.10 154 322 6.4E-20 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS18580 1dd58aa175e7ef024b944694e842a570 322 SUPERFAMILY SSF53098 169 316 1.26E-22 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS18580 1dd58aa175e7ef024b944694e842a570 322 Gene3D G3DSA:1.10.10.60 3 47 2.8E-13 T 29-03-2018 AM354_RS18580 1dd58aa175e7ef024b944694e842a570 322 Pfam PF13936 Helix-turn-helix domain 2 45 6.8E-16 T 29-03-2018 IPR025246 Transposase IS30-like HTH domain AM354_RS25205 1dd58aa175e7ef024b944694e842a570 322 Pfam PF00665 Integrase core domain 171 273 9.4E-10 T 29-03-2018 IPR001584 Integrase, catalytic core GO:0015074 AM354_RS25205 1dd58aa175e7ef024b944694e842a570 322 Gene3D G3DSA:1.10.10.10 64 153 0.0055 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS25205 1dd58aa175e7ef024b944694e842a570 322 ProSitePatterns PS01043 Transposases, IS30 family, signature. 260 276 - T 29-03-2018 IPR001598 Transposase, IS30, conserved site GO:0003677|GO:0004803|GO:0006313 AM354_RS25205 1dd58aa175e7ef024b944694e842a570 322 SUPERFAMILY SSF46689 4 115 5.02E-7 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS25205 1dd58aa175e7ef024b944694e842a570 322 Gene3D G3DSA:3.30.420.10 154 322 6.4E-20 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS25205 1dd58aa175e7ef024b944694e842a570 322 SUPERFAMILY SSF53098 169 316 1.26E-22 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS25205 1dd58aa175e7ef024b944694e842a570 322 Gene3D G3DSA:1.10.10.60 3 47 2.8E-13 T 29-03-2018 AM354_RS25205 1dd58aa175e7ef024b944694e842a570 322 Pfam PF13936 Helix-turn-helix domain 2 45 6.8E-16 T 29-03-2018 IPR025246 Transposase IS30-like HTH domain AM354_RS20510 709e09fd8307842f60effbbe81bc6f26 714 SUPERFAMILY SSF48168 15 174 3.66E-59 T 29-03-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM354_RS20510 709e09fd8307842f60effbbe81bc6f26 714 PRINTS PR01183 Ribonucleotide reductase large chain signature 465 487 8.3E-35 T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM354_RS20510 709e09fd8307842f60effbbe81bc6f26 714 PRINTS PR01183 Ribonucleotide reductase large chain signature 251 270 8.3E-35 T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM354_RS20510 709e09fd8307842f60effbbe81bc6f26 714 PRINTS PR01183 Ribonucleotide reductase large chain signature 426 449 8.3E-35 T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM354_RS20510 709e09fd8307842f60effbbe81bc6f26 714 PRINTS PR01183 Ribonucleotide reductase large chain signature 493 516 8.3E-35 T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM354_RS20510 709e09fd8307842f60effbbe81bc6f26 714 PRINTS PR01183 Ribonucleotide reductase large chain signature 382 393 8.3E-35 T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM354_RS20510 709e09fd8307842f60effbbe81bc6f26 714 PRINTS PR01183 Ribonucleotide reductase large chain signature 577 604 8.3E-35 T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM354_RS20510 709e09fd8307842f60effbbe81bc6f26 714 Gene3D G3DSA:3.20.70.20 78 701 3.8E-165 T 29-03-2018 AM354_RS20510 709e09fd8307842f60effbbe81bc6f26 714 TIGRFAM TIGR04170 RNR_1b_NrdE: ribonucleoside-diphosphate reductase, class 1b, alpha subunit 15 714 0.0 T 29-03-2018 IPR026459 Ribonucleotide reductase, class 1b, subunit NrdE KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AM354_RS20510 709e09fd8307842f60effbbe81bc6f26 714 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 100 171 1.2E-11 T 29-03-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM354_RS20510 709e09fd8307842f60effbbe81bc6f26 714 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 566 588 - T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM354_RS20510 709e09fd8307842f60effbbe81bc6f26 714 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 103 696 1.3E-158 T 29-03-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM354_RS20510 709e09fd8307842f60effbbe81bc6f26 714 Pfam PF02867 Ribonucleotide reductase, barrel domain 176 693 8.8E-144 T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM354_RS20510 709e09fd8307842f60effbbe81bc6f26 714 SUPERFAMILY SSF51998 175 698 6.41E-189 T 29-03-2018 AM354_RS20510 709e09fd8307842f60effbbe81bc6f26 714 Pfam PF08343 Ribonucleotide reductase N-terminal 16 97 1.6E-32 T 29-03-2018 IPR013554 Ribonucleotide reductase N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AM354_RS16110 4d06cdcbdaa96a508fb6a347610bdc61 38 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 38 4.7E-22 T 29-03-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS16110 4d06cdcbdaa96a508fb6a347610bdc61 38 Pfam PF00444 Ribosomal protein L36 1 38 1.7E-20 T 29-03-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS16110 4d06cdcbdaa96a508fb6a347610bdc61 38 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 38 17.971 T 29-03-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS16110 4d06cdcbdaa96a508fb6a347610bdc61 38 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 37 - T 29-03-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS16110 4d06cdcbdaa96a508fb6a347610bdc61 38 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 9 38 4.0E-10 T 29-03-2018 AM354_RS16110 4d06cdcbdaa96a508fb6a347610bdc61 38 SUPERFAMILY SSF57840 1 38 5.49E-17 T 29-03-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS11990 964bbbaec811fb328de8109f8509c2f3 895 Pfam PF11987 Translation-initiation factor 2 679 784 4.8E-36 T 29-03-2018 IPR023115 Translation initiation factor IF- 2, domain 3 AM354_RS11990 964bbbaec811fb328de8109f8509c2f3 895 Pfam PF00009 Elongation factor Tu GTP binding domain 399 555 3.3E-35 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS11990 964bbbaec811fb328de8109f8509c2f3 895 SUPERFAMILY SSF50447 568 649 9.03E-23 T 29-03-2018 IPR009000 Translation protein, beta-barrel domain AM354_RS11990 964bbbaec811fb328de8109f8509c2f3 895 SUPERFAMILY SSF46955 4 51 1.39E-13 T 29-03-2018 IPR009061 Putative DNA-binding domain AM354_RS11990 964bbbaec811fb328de8109f8509c2f3 895 SUPERFAMILY SSF52540 394 562 2.19E-52 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS11990 964bbbaec811fb328de8109f8509c2f3 895 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 58 96 3.0E-16 T 29-03-2018 IPR013575 Initiation factor 2 associated domain, bacterial AM354_RS11990 964bbbaec811fb328de8109f8509c2f3 895 Gene3D G3DSA:3.40.50.10050 697 773 1.9E-24 T 29-03-2018 IPR023115 Translation initiation factor IF- 2, domain 3 AM354_RS11990 964bbbaec811fb328de8109f8509c2f3 895 ProSitePatterns PS01176 Initiation factor 2 signature. 845 867 - T 29-03-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 AM354_RS11990 964bbbaec811fb328de8109f8509c2f3 895 Gene3D G3DSA:3.30.56.50 5 46 4.4E-11 T 29-03-2018 AM354_RS11990 964bbbaec811fb328de8109f8509c2f3 895 Gene3D G3DSA:3.30.56.50 321 362 6.1E-10 T 29-03-2018 AM354_RS11990 964bbbaec811fb328de8109f8509c2f3 895 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 4 52 1.7E-8 T 29-03-2018 IPR006847 Translation initiation factor IF-2, N-terminal AM354_RS11990 964bbbaec811fb328de8109f8509c2f3 895 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 319 369 1.5E-14 T 29-03-2018 IPR006847 Translation initiation factor IF-2, N-terminal AM354_RS11990 964bbbaec811fb328de8109f8509c2f3 895 Gene3D G3DSA:2.40.30.10 567 696 3.3E-30 T 29-03-2018 AM354_RS11990 964bbbaec811fb328de8109f8509c2f3 895 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 4 892 17.61 T 29-03-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 AM354_RS11990 964bbbaec811fb328de8109f8509c2f3 895 Gene3D G3DSA:3.40.50.300 390 564 3.6E-39 T 29-03-2018 AM354_RS11990 964bbbaec811fb328de8109f8509c2f3 895 SUPERFAMILY SSF50447 795 892 2.95E-34 T 29-03-2018 IPR009000 Translation protein, beta-barrel domain AM354_RS11990 964bbbaec811fb328de8109f8509c2f3 895 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 398 553 7.8E-33 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AM354_RS11990 964bbbaec811fb328de8109f8509c2f3 895 SUPERFAMILY SSF52156 672 801 1.44E-37 T 29-03-2018 IPR023115 Translation initiation factor IF- 2, domain 3 AM354_RS11990 964bbbaec811fb328de8109f8509c2f3 895 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 311 894 1.1E-294 T 29-03-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 AM354_RS11990 964bbbaec811fb328de8109f8509c2f3 895 Gene3D G3DSA:2.40.30.10 795 893 6.3E-32 T 29-03-2018 AM354_RS22860 52c00e1176925cd72cf66e9f903a5d8a 151 SMART SM00450 32 129 6.1E-12 T 29-03-2018 IPR001763 Rhodanese-like domain AM354_RS22860 52c00e1176925cd72cf66e9f903a5d8a 151 Pfam PF00581 Rhodanese-like domain 40 125 1.7E-11 T 29-03-2018 IPR001763 Rhodanese-like domain AM354_RS22860 52c00e1176925cd72cf66e9f903a5d8a 151 SUPERFAMILY SSF52821 18 130 1.31E-22 T 29-03-2018 IPR001763 Rhodanese-like domain AM354_RS22860 52c00e1176925cd72cf66e9f903a5d8a 151 Gene3D G3DSA:3.40.250.10 30 148 7.4E-20 T 29-03-2018 IPR001763 Rhodanese-like domain AM354_RS22860 52c00e1176925cd72cf66e9f903a5d8a 151 ProSitePatterns PS00380 Rhodanese signature 1. 57 68 - T 29-03-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 AM354_RS05860 709c273b0eae279e2d9788bb72f52efc 336 Gene3D G3DSA:3.90.25.10 181 334 3.8E-25 T 29-03-2018 AM354_RS05860 709c273b0eae279e2d9788bb72f52efc 336 SUPERFAMILY SSF51735 1 268 2.53E-61 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS05860 709c273b0eae279e2d9788bb72f52efc 336 SUPERFAMILY SSF51735 296 332 2.53E-61 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS05860 709c273b0eae279e2d9788bb72f52efc 336 Gene3D G3DSA:3.40.50.720 1 180 2.2E-30 T 29-03-2018 AM354_RS05860 709c273b0eae279e2d9788bb72f52efc 336 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 232 2.5E-27 T 29-03-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AM354_RS09785 555809fc7b290a60a508713cda09c396 486 SUPERFAMILY SSF53187 397 482 1.6E-63 T 29-03-2018 AM354_RS09785 555809fc7b290a60a508713cda09c396 486 SUPERFAMILY SSF53187 10 182 1.6E-63 T 29-03-2018 AM354_RS09785 555809fc7b290a60a508713cda09c396 486 Pfam PF07687 Peptidase dimerisation domain 207 292 3.5E-7 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain AM354_RS09785 555809fc7b290a60a508713cda09c396 486 PRINTS PR00934 X-His dipeptidase (M25) signature 251 270 3.1E-99 T 29-03-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 AM354_RS09785 555809fc7b290a60a508713cda09c396 486 PRINTS PR00934 X-His dipeptidase (M25) signature 363 381 3.1E-99 T 29-03-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 AM354_RS09785 555809fc7b290a60a508713cda09c396 486 PRINTS PR00934 X-His dipeptidase (M25) signature 450 472 3.1E-99 T 29-03-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 AM354_RS09785 555809fc7b290a60a508713cda09c396 486 PRINTS PR00934 X-His dipeptidase (M25) signature 206 223 3.1E-99 T 29-03-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 AM354_RS09785 555809fc7b290a60a508713cda09c396 486 PRINTS PR00934 X-His dipeptidase (M25) signature 101 119 3.1E-99 T 29-03-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 AM354_RS09785 555809fc7b290a60a508713cda09c396 486 PRINTS PR00934 X-His dipeptidase (M25) signature 135 152 3.1E-99 T 29-03-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 AM354_RS09785 555809fc7b290a60a508713cda09c396 486 PRINTS PR00934 X-His dipeptidase (M25) signature 159 177 3.1E-99 T 29-03-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 AM354_RS09785 555809fc7b290a60a508713cda09c396 486 PRINTS PR00934 X-His dipeptidase (M25) signature 428 444 3.1E-99 T 29-03-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 AM354_RS09785 555809fc7b290a60a508713cda09c396 486 PRINTS PR00934 X-His dipeptidase (M25) signature 80 99 3.1E-99 T 29-03-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 AM354_RS09785 555809fc7b290a60a508713cda09c396 486 Pfam PF01546 Peptidase family M20/M25/M40 72 480 3.0E-20 T 29-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AM354_RS09785 555809fc7b290a60a508713cda09c396 486 Gene3D G3DSA:3.40.630.10 5 483 3.8E-49 T 29-03-2018 AM354_RS09785 555809fc7b290a60a508713cda09c396 486 TIGRFAM TIGR01893 aa-his-dipept: Xaa-His dipeptidase 8 482 1.4E-181 T 29-03-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 AM354_RS09785 555809fc7b290a60a508713cda09c396 486 PIRSF PIRSF016599 1 485 1.9E-209 T 29-03-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 AM354_RS16735 aaded59e58071d80bad5ec3fa96a20b1 254 Gene3D G3DSA:3.30.428.30 24 251 2.4E-70 T 29-03-2018 AM354_RS16735 aaded59e58071d80bad5ec3fa96a20b1 254 Pfam PF02611 CDP-diacylglycerol pyrophosphatase 26 251 1.8E-73 T 29-03-2018 IPR003763 CDP-diacylglycerol pyrophosphatase GO:0008654|GO:0008715|GO:0016020 KEGG: 00564+3.6.1.26 AM354_RS16735 aaded59e58071d80bad5ec3fa96a20b1 254 SUPERFAMILY SSF54197 26 251 1.7E-60 T 29-03-2018 IPR011146 HIT-like domain GO:0003824 AM354_RS24865 af6545b63af5ed9f17d9802253f66339 143 Pfam PF03960 ArsC family 7 115 4.9E-18 T 29-03-2018 IPR006660 Arsenate reductase-like AM354_RS24865 af6545b63af5ed9f17d9802253f66339 143 SUPERFAMILY SSF52833 3 138 1.5E-37 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS24865 af6545b63af5ed9f17d9802253f66339 143 Gene3D G3DSA:3.40.30.10 1 141 5.3E-43 T 29-03-2018 AM354_RS24865 af6545b63af5ed9f17d9802253f66339 143 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 4 116 4.8E-39 T 29-03-2018 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 AM354_RS08110 476310b0a108224857d3bf8ada190852 29 Pfam PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) 8 29 2.7E-7 T 29-03-2018 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 AM354_RS08110 476310b0a108224857d3bf8ada190852 29 TIGRFAM TIGR02115 potass_kdpF: K+-transporting ATPase, F subunit 8 29 1.8E-8 T 29-03-2018 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 AM354_RS04730 bf98b8601c8bb0a966212db46826857e 339 Gene3D G3DSA:3.20.20.300 1 339 7.4E-82 T 29-03-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AM354_RS04730 bf98b8601c8bb0a966212db46826857e 339 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 230 247 - T 29-03-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 AM354_RS04730 bf98b8601c8bb0a966212db46826857e 339 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 7 313 1.6E-97 T 29-03-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AM354_RS04730 bf98b8601c8bb0a966212db46826857e 339 Hamap MF_00364 Beta-hexosaminidase [nagZ]. 1 328 48.109 T 29-03-2018 IPR022956 Beta-hexosaminidase, bacterial GO:0004563 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822 AM354_RS04730 bf98b8601c8bb0a966212db46826857e 339 SUPERFAMILY SSF51445 1 315 1.05E-84 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily AM354_RS21250 d76b8f71fda64a68a91eba7813294ba9 616 Pfam PF00012 Hsp70 protein 22 600 2.1E-197 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM354_RS21250 d76b8f71fda64a68a91eba7813294ba9 616 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 205 218 - T 29-03-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AM354_RS21250 d76b8f71fda64a68a91eba7813294ba9 616 Gene3D G3DSA:1.20.1270.10 529 615 1.0E-11 T 29-03-2018 IPR029048 Heat shock protein 70kD, C-terminal domain AM354_RS21250 d76b8f71fda64a68a91eba7813294ba9 616 SUPERFAMILY SSF53067 20 196 1.04E-51 T 29-03-2018 AM354_RS21250 d76b8f71fda64a68a91eba7813294ba9 616 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 24 31 - T 29-03-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AM354_RS21250 d76b8f71fda64a68a91eba7813294ba9 616 Gene3D G3DSA:3.30.420.40 209 358 2.1E-38 T 29-03-2018 AM354_RS21250 d76b8f71fda64a68a91eba7813294ba9 616 PRINTS PR00301 70kDa heat shock protein signature 20 33 2.1E-56 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM354_RS21250 d76b8f71fda64a68a91eba7813294ba9 616 PRINTS PR00301 70kDa heat shock protein signature 360 380 2.1E-56 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM354_RS21250 d76b8f71fda64a68a91eba7813294ba9 616 PRINTS PR00301 70kDa heat shock protein signature 466 482 2.1E-56 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM354_RS21250 d76b8f71fda64a68a91eba7813294ba9 616 PRINTS PR00301 70kDa heat shock protein signature 152 172 2.1E-56 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM354_RS21250 d76b8f71fda64a68a91eba7813294ba9 616 PRINTS PR00301 70kDa heat shock protein signature 211 221 2.1E-56 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM354_RS21250 d76b8f71fda64a68a91eba7813294ba9 616 PRINTS PR00301 70kDa heat shock protein signature 329 345 2.1E-56 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM354_RS21250 d76b8f71fda64a68a91eba7813294ba9 616 PRINTS PR00301 70kDa heat shock protein signature 48 60 2.1E-56 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM354_RS21250 d76b8f71fda64a68a91eba7813294ba9 616 PRINTS PR00301 70kDa heat shock protein signature 70 78 2.1E-56 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM354_RS21250 d76b8f71fda64a68a91eba7813294ba9 616 PRINTS PR00301 70kDa heat shock protein signature 385 404 2.1E-56 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM354_RS21250 d76b8f71fda64a68a91eba7813294ba9 616 TIGRFAM TIGR01991 HscA: Fe-S protein assembly chaperone HscA 21 615 9.7E-271 T 29-03-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 AM354_RS21250 d76b8f71fda64a68a91eba7813294ba9 616 Hamap MF_00679 Chaperone protein HscA [hscA]. 1 616 45.762 T 29-03-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 AM354_RS21250 d76b8f71fda64a68a91eba7813294ba9 616 Gene3D G3DSA:3.30.420.40 20 208 1.3E-58 T 29-03-2018 AM354_RS21250 d76b8f71fda64a68a91eba7813294ba9 616 SUPERFAMILY SSF53067 200 377 9.36E-50 T 29-03-2018 AM354_RS21250 d76b8f71fda64a68a91eba7813294ba9 616 SUPERFAMILY SSF100920 384 535 7.19E-50 T 29-03-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain Reactome: R-HSA-3371453 AM354_RS21250 d76b8f71fda64a68a91eba7813294ba9 616 SUPERFAMILY SSF100934 504 615 9.02E-36 T 29-03-2018 IPR029048 Heat shock protein 70kD, C-terminal domain AM354_RS21250 d76b8f71fda64a68a91eba7813294ba9 616 Gene3D G3DSA:2.60.34.10 387 528 8.0E-48 T 29-03-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain Reactome: R-HSA-3371453 AM354_RS16105 7339761a27671444651417b9135436bb 443 ProSitePatterns PS00755 Protein secY signature 1. 76 95 - T 29-03-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AM354_RS16105 7339761a27671444651417b9135436bb 443 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 20 429 9.9E-141 T 29-03-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AM354_RS16105 7339761a27671444651417b9135436bb 443 SUPERFAMILY SSF103491 16 424 1.02E-133 T 29-03-2018 IPR023201 SecY subunit domain Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AM354_RS16105 7339761a27671444651417b9135436bb 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 370 388 1.7E-98 T 29-03-2018 AM354_RS16105 7339761a27671444651417b9135436bb 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 315 337 1.7E-98 T 29-03-2018 AM354_RS16105 7339761a27671444651417b9135436bb 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 402 420 1.7E-98 T 29-03-2018 AM354_RS16105 7339761a27671444651417b9135436bb 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 154 179 1.7E-98 T 29-03-2018 AM354_RS16105 7339761a27671444651417b9135436bb 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 75 95 1.7E-98 T 29-03-2018 AM354_RS16105 7339761a27671444651417b9135436bb 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 116 139 1.7E-98 T 29-03-2018 AM354_RS16105 7339761a27671444651417b9135436bb 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 23 41 1.7E-98 T 29-03-2018 AM354_RS16105 7339761a27671444651417b9135436bb 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 180 203 1.7E-98 T 29-03-2018 AM354_RS16105 7339761a27671444651417b9135436bb 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 272 291 1.7E-98 T 29-03-2018 AM354_RS16105 7339761a27671444651417b9135436bb 443 Pfam PF00344 SecY translocase 76 417 1.1E-119 T 29-03-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AM354_RS16105 7339761a27671444651417b9135436bb 443 ProSitePatterns PS00756 Protein secY signature 2. 173 190 - T 29-03-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AM354_RS16105 7339761a27671444651417b9135436bb 443 Gene3D G3DSA:1.10.3370.10 12 439 3.1E-160 T 29-03-2018 AM354_RS16105 7339761a27671444651417b9135436bb 443 PIRSF PIRSF004557 11 441 1.9E-123 T 29-03-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AM354_RS16105 7339761a27671444651417b9135436bb 443 Hamap MF_01465 Protein translocase subunit SecY [secY]. 10 433 29.938 T 29-03-2018 IPR026593 Protein translocase subunit SecY AM354_RS24005 319a550b8d1a3f6dce48529b602fa22b 315 Gene3D G3DSA:3.40.50.720 2 166 2.5E-7 T 29-03-2018 AM354_RS24005 319a550b8d1a3f6dce48529b602fa22b 315 Pfam PF05368 NmrA-like family 15 247 1.7E-17 T 29-03-2018 IPR008030 NmrA-like domain Reactome: R-HSA-70635 AM354_RS24005 319a550b8d1a3f6dce48529b602fa22b 315 Gene3D G3DSA:3.90.25.10 167 309 1.3E-9 T 29-03-2018 AM354_RS24005 319a550b8d1a3f6dce48529b602fa22b 315 SUPERFAMILY SSF51735 10 278 1.18E-20 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS22555 e0e6edf0c29ad22f6da294289f22346f 230 SUPERFAMILY SSF53681 1 114 2.42E-35 T 29-03-2018 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS22555 e0e6edf0c29ad22f6da294289f22346f 230 Gene3D G3DSA:3.40.50.1860 118 215 3.0E-24 T 29-03-2018 AM354_RS22555 e0e6edf0c29ad22f6da294289f22346f 230 TIGRFAM TIGR00035 asp_race: aspartate racemase 1 229 2.1E-71 T 29-03-2018 IPR004380 Aspartate racemase GO:0006520|GO:0016855 AM354_RS22555 e0e6edf0c29ad22f6da294289f22346f 230 Gene3D G3DSA:3.40.50.1860 1 117 3.5E-32 T 29-03-2018 AM354_RS22555 e0e6edf0c29ad22f6da294289f22346f 230 SUPERFAMILY SSF53681 118 228 1.37E-32 T 29-03-2018 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS22555 e0e6edf0c29ad22f6da294289f22346f 230 Pfam PF01177 Asp/Glu/Hydantoin racemase 7 224 3.0E-60 T 29-03-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS10285 e9b5ae99a88639ae3b4fa5944ed9e114 256 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 28 247 2.2E-60 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM354_RS10285 e9b5ae99a88639ae3b4fa5944ed9e114 256 SMART SM00062 26 249 5.7E-59 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM354_RS10285 e9b5ae99a88639ae3b4fa5944ed9e114 256 Gene3D G3DSA:3.40.190.10 9 147 2.3E-35 T 29-03-2018 AM354_RS10285 e9b5ae99a88639ae3b4fa5944ed9e114 256 SMART SM00079 26 248 1.7E-5 T 29-03-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 AM354_RS10285 e9b5ae99a88639ae3b4fa5944ed9e114 256 SUPERFAMILY SSF53850 1 249 1.63E-65 T 29-03-2018 AM354_RS10285 e9b5ae99a88639ae3b4fa5944ed9e114 256 Gene3D G3DSA:3.40.190.10 148 251 1.8E-13 T 29-03-2018 AM354_RS10010 d29c9fb8ebd6491ab50f7a29a32cace4 857 Pfam PF07724 AAA domain (Cdc48 subfamily) 596 760 4.3E-57 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AM354_RS10010 d29c9fb8ebd6491ab50f7a29a32cace4 857 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 854 0.0 T 29-03-2018 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0016485 AM354_RS10010 d29c9fb8ebd6491ab50f7a29a32cace4 857 Gene3D G3DSA:1.10.8.60 343 547 3.6E-44 T 29-03-2018 AM354_RS10010 d29c9fb8ebd6491ab50f7a29a32cace4 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 646 664 1.6E-42 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 AM354_RS10010 d29c9fb8ebd6491ab50f7a29a32cace4 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 708 722 1.6E-42 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 AM354_RS10010 d29c9fb8ebd6491ab50f7a29a32cace4 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 601 619 1.6E-42 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 AM354_RS10010 d29c9fb8ebd6491ab50f7a29a32cace4 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 675 693 1.6E-42 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 AM354_RS10010 d29c9fb8ebd6491ab50f7a29a32cace4 857 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 766 845 3.3E-26 T 29-03-2018 IPR019489 Clp ATPase, C-terminal AM354_RS10010 d29c9fb8ebd6491ab50f7a29a32cace4 857 SMART SM01086 766 855 9.4E-37 T 29-03-2018 IPR019489 Clp ATPase, C-terminal AM354_RS10010 d29c9fb8ebd6491ab50f7a29a32cace4 857 SUPERFAMILY SSF52540 546 853 9.98E-86 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS10010 d29c9fb8ebd6491ab50f7a29a32cace4 857 SUPERFAMILY SSF81923 4 156 6.97E-42 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 AM354_RS10010 d29c9fb8ebd6491ab50f7a29a32cace4 857 Gene3D G3DSA:1.10.8.60 766 857 1.3E-22 T 29-03-2018 AM354_RS10010 d29c9fb8ebd6491ab50f7a29a32cace4 857 Gene3D G3DSA:1.10.1780.10 1 151 2.4E-33 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 AM354_RS10010 d29c9fb8ebd6491ab50f7a29a32cace4 857 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 631 649 - T 29-03-2018 IPR028299 ClpA/B, conserved site 2 AM354_RS10010 d29c9fb8ebd6491ab50f7a29a32cace4 857 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 294 306 - T 29-03-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 AM354_RS10010 d29c9fb8ebd6491ab50f7a29a32cace4 857 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 68 4.8E-14 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 AM354_RS10010 d29c9fb8ebd6491ab50f7a29a32cace4 857 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 94 145 3.9E-11 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 AM354_RS10010 d29c9fb8ebd6491ab50f7a29a32cace4 857 SUPERFAMILY SSF52540 159 545 8.79E-99 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS10010 d29c9fb8ebd6491ab50f7a29a32cace4 857 Gene3D G3DSA:3.40.50.300 157 342 2.7E-25 T 29-03-2018 AM354_RS10010 d29c9fb8ebd6491ab50f7a29a32cace4 857 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 203 335 3.0E-13 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AM354_RS10010 d29c9fb8ebd6491ab50f7a29a32cace4 857 SMART SM00382 597 733 5.6E-10 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS10010 d29c9fb8ebd6491ab50f7a29a32cace4 857 SMART SM00382 198 343 1.3E-11 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS10010 d29c9fb8ebd6491ab50f7a29a32cace4 857 Gene3D G3DSA:3.40.50.300 552 765 2.6E-56 T 29-03-2018 AM354_RS25300 2c594bc3709f5db06bcfd449c8c993b3 144 Pfam PF05130 FlgN protein 1 133 2.3E-24 T 29-03-2018 IPR007809 FlgN-like protein GO:0005515|GO:0044780 AM354_RS25300 2c594bc3709f5db06bcfd449c8c993b3 144 SUPERFAMILY SSF140566 1 118 6.15E-17 T 29-03-2018 IPR007809 FlgN-like protein GO:0005515|GO:0044780 AM354_RS25300 2c594bc3709f5db06bcfd449c8c993b3 144 Gene3D G3DSA:1.20.58.300 1 119 4.9E-21 T 29-03-2018 AM354_RS00655 86ce52c59c81d4dfcc1bf0cdbb4c268c 127 SUPERFAMILY SSF88659 71 113 1.27E-6 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS00655 86ce52c59c81d4dfcc1bf0cdbb4c268c 127 Gene3D G3DSA:1.10.10.10 1 114 2.9E-6 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS00655 86ce52c59c81d4dfcc1bf0cdbb4c268c 127 Pfam PF06530 Phage antitermination protein Q 2 125 8.6E-25 T 29-03-2018 IPR010534 Bacteriophage 933W, GpQ GO:0003677|GO:0060567 AM354_RS08155 85c68a3d87146e6ce344456077d1ef4b 180 Pfam PF17206 SeqA protein N-terminal domain 1 36 6.6E-25 T 29-03-2018 IPR033761 Negative modulator of initiation of replication SeqA, N-terminal AM354_RS08155 85c68a3d87146e6ce344456077d1ef4b 180 SUPERFAMILY SSF82808 65 179 2.09E-48 T 29-03-2018 IPR026577 Replication modulator SeqA, C-terminal DNA-binding domain GO:0003677 AM354_RS08155 85c68a3d87146e6ce344456077d1ef4b 180 Gene3D G3DSA:1.10.1220.10 1 37 3.5E-26 T 29-03-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AM354_RS08155 85c68a3d87146e6ce344456077d1ef4b 180 Hamap MF_00908 Negative modulator of initiation of replication [seqA]. 1 180 43.613 T 29-03-2018 IPR005621 Negative modulator of initiation of replication SeqA GO:0003677|GO:0032297 AM354_RS08155 85c68a3d87146e6ce344456077d1ef4b 180 PIRSF PIRSF019401 1 180 8.3E-50 T 29-03-2018 IPR005621 Negative modulator of initiation of replication SeqA GO:0003677|GO:0032297 AM354_RS08155 85c68a3d87146e6ce344456077d1ef4b 180 SUPERFAMILY SSF47598 1 35 6.89E-14 T 29-03-2018 IPR010985 Ribbon-helix-helix GO:0006355 AM354_RS08155 85c68a3d87146e6ce344456077d1ef4b 180 Gene3D G3DSA:1.20.1380.10 74 176 3.7E-42 T 29-03-2018 IPR026577 Replication modulator SeqA, C-terminal DNA-binding domain GO:0003677 AM354_RS08155 85c68a3d87146e6ce344456077d1ef4b 180 Pfam PF03925 SeqA protein C-terminal domain 70 178 2.1E-49 T 29-03-2018 IPR026577 Replication modulator SeqA, C-terminal DNA-binding domain GO:0003677 AM354_RS19095 fe7daa6263097168b3956ff881f6b6ef 830 Gene3D G3DSA:3.30.2060.10 115 201 4.5E-29 T 29-03-2018 AM354_RS19095 fe7daa6263097168b3956ff881f6b6ef 830 Gene3D G3DSA:1.20.5.100 60 98 2.9E-17 T 29-03-2018 AM354_RS19095 fe7daa6263097168b3956ff881f6b6ef 830 SUPERFAMILY SSF56601 415 788 3.45E-108 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM354_RS19095 fe7daa6263097168b3956ff881f6b6ef 830 SUPERFAMILY SSF56601 365 387 3.45E-108 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM354_RS19095 fe7daa6263097168b3956ff881f6b6ef 830 Pfam PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal 1 82 9.9E-31 T 29-03-2018 IPR032730 Transglycosylase PBP1b, N-terminal transmembrane domain AM354_RS19095 fe7daa6263097168b3956ff881f6b6ef 830 Pfam PF00912 Transglycosylase 212 383 6.4E-55 T 29-03-2018 IPR001264 Glycosyl transferase, family 51 AM354_RS19095 fe7daa6263097168b3956ff881f6b6ef 830 Pfam PF14814 Bifunctional transglycosylase second domain 116 200 4.3E-30 T 29-03-2018 IPR028166 Bifunctional transglycosylase second domain KEGG: 00500+2.4.1.12|KEGG: 00550+2.4.1.129|MetaCyc: PWY-1001|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AM354_RS19095 fe7daa6263097168b3956ff881f6b6ef 830 TIGRFAM TIGR02071 PBP_1b: penicillin-binding protein 1B 71 797 0.0 T 29-03-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00500+2.4.1.12|KEGG: 00550+2.4.1.129|MetaCyc: PWY-1001|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AM354_RS19095 fe7daa6263097168b3956ff881f6b6ef 830 Gene3D G3DSA:3.40.710.10 405 802 2.4E-95 T 29-03-2018 AM354_RS19095 fe7daa6263097168b3956ff881f6b6ef 830 SUPERFAMILY SSF53955 199 406 5.06E-66 T 29-03-2018 IPR023346 Lysozyme-like domain AM354_RS19095 fe7daa6263097168b3956ff881f6b6ef 830 Pfam PF00905 Penicillin binding protein transpeptidase domain 476 722 5.7E-23 T 29-03-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AM354_RS19095 fe7daa6263097168b3956ff881f6b6ef 830 PIRSF PIRSF002799 42 830 0.0 T 29-03-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00500+2.4.1.12|KEGG: 00550+2.4.1.129|MetaCyc: PWY-1001|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AM354_RS19095 fe7daa6263097168b3956ff881f6b6ef 830 Gene3D G3DSA:1.10.3810.10 202 400 4.0E-61 T 29-03-2018 IPR001264 Glycosyl transferase, family 51 AM354_RS18680 2bed6cb61b6ba06d69bf8818bf86000c 212 PIRSF PIRSF001458 1 211 4.5E-94 T 29-03-2018 IPR004927 Alkylmercury lyase GO:0018836|GO:0046413 AM354_RS18680 2bed6cb61b6ba06d69bf8818bf86000c 212 Gene3D G3DSA:1.10.10.10 33 73 1.1E-10 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS18680 2bed6cb61b6ba06d69bf8818bf86000c 212 PRINTS PR01699 Organomercurial lyase signature 120 131 2.6E-31 T 29-03-2018 IPR004927 Alkylmercury lyase GO:0018836|GO:0046413 AM354_RS18680 2bed6cb61b6ba06d69bf8818bf86000c 212 PRINTS PR01699 Organomercurial lyase signature 166 181 2.6E-31 T 29-03-2018 IPR004927 Alkylmercury lyase GO:0018836|GO:0046413 AM354_RS18680 2bed6cb61b6ba06d69bf8818bf86000c 212 PRINTS PR01699 Organomercurial lyase signature 95 104 2.6E-31 T 29-03-2018 IPR004927 Alkylmercury lyase GO:0018836|GO:0046413 AM354_RS18680 2bed6cb61b6ba06d69bf8818bf86000c 212 PRINTS PR01699 Organomercurial lyase signature 37 50 2.6E-31 T 29-03-2018 IPR004927 Alkylmercury lyase GO:0018836|GO:0046413 AM354_RS18680 2bed6cb61b6ba06d69bf8818bf86000c 212 PRINTS PR01699 Organomercurial lyase signature 78 92 2.6E-31 T 29-03-2018 IPR004927 Alkylmercury lyase GO:0018836|GO:0046413 AM354_RS18680 2bed6cb61b6ba06d69bf8818bf86000c 212 Pfam PF03243 Alkylmercury lyase 79 199 2.4E-36 T 29-03-2018 IPR004927 Alkylmercury lyase GO:0018836|GO:0046413 AM354_RS18680 2bed6cb61b6ba06d69bf8818bf86000c 212 Hamap MF_00714 Alkylmercury lyase [merB]. 4 212 47.37 T 29-03-2018 IPR004927 Alkylmercury lyase GO:0018836|GO:0046413 AM354_RS18680 2bed6cb61b6ba06d69bf8818bf86000c 212 Pfam PF12324 Helix-turn-helix domain of alkylmercury lyase 9 78 2.6E-19 T 29-03-2018 IPR024259 Alkylmercury lyase, helix-turn-helix domain AM354_RS18680 2bed6cb61b6ba06d69bf8818bf86000c 212 SUPERFAMILY SSF46785 25 83 1.63E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS18680 2bed6cb61b6ba06d69bf8818bf86000c 212 SUPERFAMILY SSF160387 84 207 1.33E-38 T 29-03-2018 AM354_RS07845 3401d9b2b7bdc97ca3513a27e82d6bc5 383 Pfam PF00288 GHMP kinases N terminal domain 114 181 8.3E-15 T 29-03-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 AM354_RS07845 3401d9b2b7bdc97ca3513a27e82d6bc5 383 SUPERFAMILY SSF54211 8 203 1.82E-63 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM354_RS07845 3401d9b2b7bdc97ca3513a27e82d6bc5 383 Gene3D G3DSA:3.30.230.10 3 206 4.7E-60 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AM354_RS07845 3401d9b2b7bdc97ca3513a27e82d6bc5 383 Gene3D G3DSA:3.30.70.890 207 382 2.0E-57 T 29-03-2018 IPR013750 GHMP kinase, C-terminal domain AM354_RS07845 3401d9b2b7bdc97ca3513a27e82d6bc5 383 Hamap MF_00246 Galactokinase [galK]. 25 382 43.647 T 29-03-2018 IPR022963 Galactokinase, bacterial GO:0004335|GO:0006012 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 AM354_RS07845 3401d9b2b7bdc97ca3513a27e82d6bc5 383 PRINTS PR00959 Mevalonate kinase family signature 25 49 2.1E-46 T 29-03-2018 AM354_RS07845 3401d9b2b7bdc97ca3513a27e82d6bc5 383 PRINTS PR00959 Mevalonate kinase family signature 328 345 2.1E-46 T 29-03-2018 AM354_RS07845 3401d9b2b7bdc97ca3513a27e82d6bc5 383 PRINTS PR00959 Mevalonate kinase family signature 162 181 2.1E-46 T 29-03-2018 AM354_RS07845 3401d9b2b7bdc97ca3513a27e82d6bc5 383 PRINTS PR00959 Mevalonate kinase family signature 119 141 2.1E-46 T 29-03-2018 AM354_RS07845 3401d9b2b7bdc97ca3513a27e82d6bc5 383 PRINTS PR00473 Galactokinase signature 92 103 1.6E-29 T 29-03-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 AM354_RS07845 3401d9b2b7bdc97ca3513a27e82d6bc5 383 PRINTS PR00473 Galactokinase signature 263 277 1.6E-29 T 29-03-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 AM354_RS07845 3401d9b2b7bdc97ca3513a27e82d6bc5 383 PRINTS PR00473 Galactokinase signature 27 45 1.6E-29 T 29-03-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 AM354_RS07845 3401d9b2b7bdc97ca3513a27e82d6bc5 383 PRINTS PR00473 Galactokinase signature 112 130 1.6E-29 T 29-03-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 AM354_RS07845 3401d9b2b7bdc97ca3513a27e82d6bc5 383 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 121 132 - T 29-03-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 AM354_RS07845 3401d9b2b7bdc97ca3513a27e82d6bc5 383 ProSitePatterns PS00106 Galactokinase signature. 27 38 - T 29-03-2018 IPR019741 Galactokinase, conserved site KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 AM354_RS07845 3401d9b2b7bdc97ca3513a27e82d6bc5 383 Pfam PF10509 Galactokinase galactose-binding signature 10 58 5.3E-23 T 29-03-2018 IPR019539 Galactokinase galactose-binding domain GO:0005534 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 AM354_RS07845 3401d9b2b7bdc97ca3513a27e82d6bc5 383 TIGRFAM TIGR00131 gal_kin: galactokinase 7 383 5.6E-156 T 29-03-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 AM354_RS07845 3401d9b2b7bdc97ca3513a27e82d6bc5 383 SUPERFAMILY SSF55060 205 381 1.6E-53 T 29-03-2018 IPR013750 GHMP kinase, C-terminal domain AM354_RS07845 3401d9b2b7bdc97ca3513a27e82d6bc5 383 PIRSF PIRSF000530 3 383 8.6E-124 T 29-03-2018 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0008152|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 AM354_RS07845 3401d9b2b7bdc97ca3513a27e82d6bc5 383 Pfam PF08544 GHMP kinases C terminal 279 361 1.0E-11 T 29-03-2018 IPR013750 GHMP kinase, C-terminal domain AM354_RS24340 d96fb2eefe86ce8262b420faf5b74e89 274 SUPERFAMILY SSF51430 6 267 7.86E-91 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS24340 d96fb2eefe86ce8262b420faf5b74e89 274 PRINTS PR00069 Aldo-keto reductase signature 37 61 3.1E-47 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM354_RS24340 d96fb2eefe86ce8262b420faf5b74e89 274 PRINTS PR00069 Aldo-keto reductase signature 91 109 3.1E-47 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM354_RS24340 d96fb2eefe86ce8262b420faf5b74e89 274 PRINTS PR00069 Aldo-keto reductase signature 157 186 3.1E-47 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM354_RS24340 d96fb2eefe86ce8262b420faf5b74e89 274 PRINTS PR00069 Aldo-keto reductase signature 196 220 3.1E-47 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM354_RS24340 d96fb2eefe86ce8262b420faf5b74e89 274 PRINTS PR00069 Aldo-keto reductase signature 123 140 3.1E-47 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM354_RS24340 d96fb2eefe86ce8262b420faf5b74e89 274 ProSitePatterns PS00063 Aldo/keto reductase family putative active site signature. 229 244 - T 29-03-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AM354_RS24340 d96fb2eefe86ce8262b420faf5b74e89 274 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 123 140 - T 29-03-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AM354_RS24340 d96fb2eefe86ce8262b420faf5b74e89 274 Pfam PF00248 Aldo/keto reductase family 18 260 3.7E-51 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS24340 d96fb2eefe86ce8262b420faf5b74e89 274 Gene3D G3DSA:3.20.20.100 1 274 3.4E-93 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS24340 d96fb2eefe86ce8262b420faf5b74e89 274 PIRSF PIRSF000097 1 272 1.1E-86 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM354_RS24340 d96fb2eefe86ce8262b420faf5b74e89 274 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 41 58 - T 29-03-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AM354_RS13980 385823cd68b83a0c9bfaa6d483653683 457 SUPERFAMILY SSF51161 255 437 2.81E-52 T 29-03-2018 IPR011004 Trimeric LpxA-like AM354_RS13980 385823cd68b83a0c9bfaa6d483653683 457 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 6 455 4.7E-204 T 29-03-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587 AM354_RS13980 385823cd68b83a0c9bfaa6d483653683 457 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 5 452 43.28 T 29-03-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587 AM354_RS13980 385823cd68b83a0c9bfaa6d483653683 457 Gene3D G3DSA:3.90.550.10 1 244 5.6E-54 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS13980 385823cd68b83a0c9bfaa6d483653683 457 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 318 350 0.0021 T 29-03-2018 IPR001451 Hexapeptide repeat AM354_RS13980 385823cd68b83a0c9bfaa6d483653683 457 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 395 429 1.1E-6 T 29-03-2018 IPR001451 Hexapeptide repeat AM354_RS13980 385823cd68b83a0c9bfaa6d483653683 457 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 267 300 6.4E-7 T 29-03-2018 IPR001451 Hexapeptide repeat AM354_RS13980 385823cd68b83a0c9bfaa6d483653683 457 Gene3D G3DSA:2.160.10.10 245 317 3.1E-18 T 29-03-2018 AM354_RS13980 385823cd68b83a0c9bfaa6d483653683 457 Pfam PF12804 MobA-like NTP transferase domain 8 123 8.8E-22 T 29-03-2018 IPR025877 MobA-like NTP transferase AM354_RS13980 385823cd68b83a0c9bfaa6d483653683 457 SUPERFAMILY SSF53448 6 252 6.26E-68 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS13980 385823cd68b83a0c9bfaa6d483653683 457 Gene3D G3DSA:2.160.10.10 318 440 6.0E-36 T 29-03-2018 AM354_RS13980 385823cd68b83a0c9bfaa6d483653683 457 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 403 431 - T 29-03-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AM354_RS11210 083dc8b078aa7f7fcae6e710e4a2f17e 252 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 74 1.2E-20 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS11210 083dc8b078aa7f7fcae6e710e4a2f17e 252 SMART SM00345 15 74 9.6E-22 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS11210 083dc8b078aa7f7fcae6e710e4a2f17e 252 Pfam PF07729 FCD domain 118 242 5.9E-22 T 29-03-2018 IPR011711 GntR, C-terminal AM354_RS11210 083dc8b078aa7f7fcae6e710e4a2f17e 252 Gene3D G3DSA:1.20.120.530 115 252 1.2E-24 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM354_RS11210 083dc8b078aa7f7fcae6e710e4a2f17e 252 SMART SM00895 117 243 1.5E-22 T 29-03-2018 IPR011711 GntR, C-terminal AM354_RS11210 083dc8b078aa7f7fcae6e710e4a2f17e 252 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 1.4E-9 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS11210 083dc8b078aa7f7fcae6e710e4a2f17e 252 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 1.4E-9 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS11210 083dc8b078aa7f7fcae6e710e4a2f17e 252 SUPERFAMILY SSF48008 117 247 7.06E-24 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM354_RS11210 083dc8b078aa7f7fcae6e710e4a2f17e 252 SUPERFAMILY SSF46785 6 78 9.54E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS11210 083dc8b078aa7f7fcae6e710e4a2f17e 252 Gene3D G3DSA:1.10.10.10 4 76 8.7E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS19935 0ac474c8ec8a0008231626e6bd6217bb 339 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 29-03-2018 AM354_RS19935 0ac474c8ec8a0008231626e6bd6217bb 339 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 5.4E-21 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS19935 0ac474c8ec8a0008231626e6bd6217bb 339 Gene3D G3DSA:3.40.50.2300 174 311 7.8E-43 T 29-03-2018 AM354_RS19935 0ac474c8ec8a0008231626e6bd6217bb 339 Gene3D G3DSA:3.40.50.2300 56 173 2.6E-30 T 29-03-2018 AM354_RS19935 0ac474c8ec8a0008231626e6bd6217bb 339 Gene3D G3DSA:1.10.260.40 2 55 1.2E-22 T 29-03-2018 AM354_RS19935 0ac474c8ec8a0008231626e6bd6217bb 339 SUPERFAMILY SSF47413 1 59 2.04E-17 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS19935 0ac474c8ec8a0008231626e6bd6217bb 339 SUPERFAMILY SSF53822 61 331 4.52E-83 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS19935 0ac474c8ec8a0008231626e6bd6217bb 339 Pfam PF13377 Periplasmic binding protein-like domain 168 329 6.3E-33 T 29-03-2018 AM354_RS19935 0ac474c8ec8a0008231626e6bd6217bb 339 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 2.6E-7 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS19935 0ac474c8ec8a0008231626e6bd6217bb 339 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 2.6E-7 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS19935 0ac474c8ec8a0008231626e6bd6217bb 339 SMART SM00354 1 71 5.4E-37 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS19175 68a7cb1e5b3bdca29a3d431236be1ea7 264 Gene3D G3DSA:3.30.450.40 79 263 3.3E-43 T 29-03-2018 IPR029016 GAF domain-like AM354_RS19175 68a7cb1e5b3bdca29a3d431236be1ea7 264 SUPERFAMILY SSF46785 11 84 2.39E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS19175 68a7cb1e5b3bdca29a3d431236be1ea7 264 Pfam PF09339 IclR helix-turn-helix domain 14 64 1.6E-17 T 29-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AM354_RS19175 68a7cb1e5b3bdca29a3d431236be1ea7 264 SUPERFAMILY SSF55781 77 256 2.22E-39 T 29-03-2018 IPR029016 GAF domain-like AM354_RS19175 68a7cb1e5b3bdca29a3d431236be1ea7 264 Gene3D G3DSA:1.10.10.10 1 72 2.1E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS19175 68a7cb1e5b3bdca29a3d431236be1ea7 264 Pfam PF01614 Bacterial transcriptional regulator 132 252 4.1E-20 T 29-03-2018 IPR014757 Transcription regulator IclR, C-terminal AM354_RS19175 68a7cb1e5b3bdca29a3d431236be1ea7 264 SMART SM00346 11 101 8.7E-30 T 29-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AM354_RS20665 40bb91529951e1bd7374dabd6f7a1e1c 537 Pfam PF03929 PepSY-associated TM region 6 384 1.1E-62 T 29-03-2018 IPR005625 PepSY-associated TM protein AM354_RS20665 40bb91529951e1bd7374dabd6f7a1e1c 537 Pfam PF10749 Protein of unknown function (DUF2534) 458 534 3.0E-26 T 29-03-2018 IPR019685 Protein of unknown function DUF2534 AM354_RS20665 40bb91529951e1bd7374dabd6f7a1e1c 537 Gene3D G3DSA:1.20.950.20 150 265 3.1E-4 T 29-03-2018 AM354_RS21950 bb9cd2847fe47478b3a3c38740d5e252 212 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 3 188 32.089 T 29-03-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 AM354_RS21950 bb9cd2847fe47478b3a3c38740d5e252 212 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 134 157 - T 29-03-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM354_RS21950 bb9cd2847fe47478b3a3c38740d5e252 212 Gene3D G3DSA:3.40.50.170 1 197 5.7E-72 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM354_RS21950 bb9cd2847fe47478b3a3c38740d5e252 212 SUPERFAMILY SSF53328 2 206 2.75E-68 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM354_RS21950 bb9cd2847fe47478b3a3c38740d5e252 212 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 2 191 2.9E-82 T 29-03-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 AM354_RS21950 bb9cd2847fe47478b3a3c38740d5e252 212 Pfam PF00551 Formyl transferase 2 182 1.3E-67 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM354_RS02765 aa7a4258e967f6ab62720fb777863610 432 Pfam PF07690 Major Facilitator Superfamily 53 271 4.2E-29 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS02765 aa7a4258e967f6ab62720fb777863610 432 Gene3D G3DSA:1.20.1250.20 246 431 2.7E-18 T 29-03-2018 AM354_RS02765 aa7a4258e967f6ab62720fb777863610 432 Gene3D G3DSA:1.20.1250.20 41 239 7.3E-34 T 29-03-2018 AM354_RS02765 aa7a4258e967f6ab62720fb777863610 432 SUPERFAMILY SSF103473 41 427 4.05E-66 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS02765 aa7a4258e967f6ab62720fb777863610 432 ProSitePatterns PS00216 Sugar transport proteins signature 1. 103 119 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM354_RS09555 f74c440be0422fbcf9acc7bb86f3d799 559 SUPERFAMILY SSF52518 2 176 2.46E-39 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS09555 f74c440be0422fbcf9acc7bb86f3d799 559 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 175 2.2E-34 T 29-03-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AM354_RS09555 f74c440be0422fbcf9acc7bb86f3d799 559 PIRSF PIRSF036565 1 549 1.4E-181 T 29-03-2018 IPR012110 Thiamine pyrophosphate (TPP)-dependent enzyme GO:0016831 AM354_RS09555 f74c440be0422fbcf9acc7bb86f3d799 559 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 397 527 2.7E-17 T 29-03-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AM354_RS09555 f74c440be0422fbcf9acc7bb86f3d799 559 SUPERFAMILY SSF52467 165 341 6.82E-27 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM354_RS09555 f74c440be0422fbcf9acc7bb86f3d799 559 Gene3D G3DSA:3.40.50.970 347 543 3.9E-35 T 29-03-2018 AM354_RS09555 f74c440be0422fbcf9acc7bb86f3d799 559 Gene3D G3DSA:3.40.50.970 1 192 7.6E-43 T 29-03-2018 AM354_RS09555 f74c440be0422fbcf9acc7bb86f3d799 559 SUPERFAMILY SSF52518 356 541 4.68E-44 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS09555 f74c440be0422fbcf9acc7bb86f3d799 559 Gene3D G3DSA:3.40.50.1220 193 342 3.3E-24 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM354_RS09555 f74c440be0422fbcf9acc7bb86f3d799 559 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 200 322 4.6E-20 T 29-03-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AM354_RS09555 f74c440be0422fbcf9acc7bb86f3d799 559 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 417 436 - T 29-03-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 AM354_RS10055 3cb74bf02de4860363508b70440b222d 358 Gene3D G3DSA:3.20.20.70 9 356 2.1E-130 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS10055 3cb74bf02de4860363508b70440b222d 358 Pfam PF00793 DAHP synthetase I family 41 340 2.0E-106 T 29-03-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AM354_RS10055 3cb74bf02de4860363508b70440b222d 358 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 8 347 5.0E-168 T 29-03-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 AM354_RS10055 3cb74bf02de4860363508b70440b222d 358 SUPERFAMILY SSF51569 8 346 1.92E-138 T 29-03-2018 AM354_RS10055 3cb74bf02de4860363508b70440b222d 358 PIRSF PIRSF001361 1 354 1.4E-163 T 29-03-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 AM354_RS16910 6c1318b4a6f9f42a10681501929565ed 477 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 5 48 3.0E-15 T 29-03-2018 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 AM354_RS16910 6c1318b4a6f9f42a10681501929565ed 477 PRINTS PR00045 Sigma-54 factor signature 186 203 3.0E-31 T 29-03-2018 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 AM354_RS16910 6c1318b4a6f9f42a10681501929565ed 477 PRINTS PR00045 Sigma-54 factor signature 376 388 3.0E-31 T 29-03-2018 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 AM354_RS16910 6c1318b4a6f9f42a10681501929565ed 477 PRINTS PR00045 Sigma-54 factor signature 392 403 3.0E-31 T 29-03-2018 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 AM354_RS16910 6c1318b4a6f9f42a10681501929565ed 477 PRINTS PR00045 Sigma-54 factor signature 450 468 3.0E-31 T 29-03-2018 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 AM354_RS16910 6c1318b4a6f9f42a10681501929565ed 477 Pfam PF04963 Sigma-54 factor, core binding domain 114 303 8.3E-62 T 29-03-2018 IPR007046 RNA polymerase sigma factor 54, core-binding GO:0003677|GO:0006352 AM354_RS16910 6c1318b4a6f9f42a10681501929565ed 477 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 9 474 2.0E-159 T 29-03-2018 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 AM354_RS16910 6c1318b4a6f9f42a10681501929565ed 477 PIRSF PIRSF000774 1 477 9.1E-152 T 29-03-2018 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 AM354_RS16910 6c1318b4a6f9f42a10681501929565ed 477 Pfam PF04552 Sigma-54, DNA binding domain 317 475 1.1E-69 T 29-03-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding AM354_RS16910 6c1318b4a6f9f42a10681501929565ed 477 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 455 462 - T 29-03-2018 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 AM354_RS16910 6c1318b4a6f9f42a10681501929565ed 477 Gene3D G3DSA:1.10.10.10 322 413 1.0E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS16910 6c1318b4a6f9f42a10681501929565ed 477 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 364 383 - T 29-03-2018 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 AM354_RS18935 7ba20d80fb946a84e37c3f3ef1050b95 411 Gene3D G3DSA:1.10.760.10 301 411 1.6E-16 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS18935 7ba20d80fb946a84e37c3f3ef1050b95 411 SUPERFAMILY SSF46626 308 410 1.45E-17 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS18935 7ba20d80fb946a84e37c3f3ef1050b95 411 PIRSF PIRSF000018 10 411 8.4E-123 T 29-03-2018 IPR014353 Membrane-bound alcohol dehydrogenase, cytochrome c subunit GO:0005506|GO:0016020|GO:0016614|GO:0020037 AM354_RS18935 7ba20d80fb946a84e37c3f3ef1050b95 411 SUPERFAMILY SSF46626 189 300 2.38E-11 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS18935 7ba20d80fb946a84e37c3f3ef1050b95 411 Gene3D G3DSA:1.10.760.10 171 300 1.6E-11 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS18935 7ba20d80fb946a84e37c3f3ef1050b95 411 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 307 390 1.8E-8 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS18935 7ba20d80fb946a84e37c3f3ef1050b95 411 Gene3D G3DSA:1.10.760.10 23 157 1.7E-22 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS18935 7ba20d80fb946a84e37c3f3ef1050b95 411 Pfam PF00034 Cytochrome c 43 142 1.0E-8 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS18935 7ba20d80fb946a84e37c3f3ef1050b95 411 SUPERFAMILY SSF46626 33 163 3.45E-26 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS18935 7ba20d80fb946a84e37c3f3ef1050b95 411 PRINTS PR00605 Class IC cytochrome C signature 368 390 5.9E-6 T 29-03-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 AM354_RS18935 7ba20d80fb946a84e37c3f3ef1050b95 411 PRINTS PR00605 Class IC cytochrome C signature 315 326 5.9E-6 T 29-03-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 AM354_RS16130 4db4e244ba50bb188b209700dbad63f2 329 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 24 316 9.4E-113 T 29-03-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM354_RS16130 4db4e244ba50bb188b209700dbad63f2 329 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 60 156 1.8E-23 T 29-03-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM354_RS16130 4db4e244ba50bb188b209700dbad63f2 329 SUPERFAMILY SSF47789 251 325 1.27E-25 T 29-03-2018 AM354_RS16130 4db4e244ba50bb188b209700dbad63f2 329 SMART SM00662 23 234 2.5E-105 T 29-03-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM354_RS16130 4db4e244ba50bb188b209700dbad63f2 329 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 245 308 7.5E-24 T 29-03-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM354_RS16130 4db4e244ba50bb188b209700dbad63f2 329 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 256 329 2.0E-36 T 29-03-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM354_RS16130 4db4e244ba50bb188b209700dbad63f2 329 SUPERFAMILY SSF55257 179 231 1.57E-30 T 29-03-2018 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM354_RS16130 4db4e244ba50bb188b209700dbad63f2 329 SUPERFAMILY SSF55257 6 53 1.57E-30 T 29-03-2018 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM354_RS16130 4db4e244ba50bb188b209700dbad63f2 329 Gene3D G3DSA:3.30.1360.10 4 90 3.1E-19 T 29-03-2018 AM354_RS16130 4db4e244ba50bb188b209700dbad63f2 329 Gene3D G3DSA:3.30.1360.10 119 231 5.9E-28 T 29-03-2018 AM354_RS16130 4db4e244ba50bb188b209700dbad63f2 329 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 29 228 3.9E-24 T 29-03-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM354_RS16130 4db4e244ba50bb188b209700dbad63f2 329 Gene3D G3DSA:1.10.150.20 245 328 7.6E-29 T 29-03-2018 AM354_RS16130 4db4e244ba50bb188b209700dbad63f2 329 SUPERFAMILY SSF56553 53 178 3.31E-41 T 29-03-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM354_RS16130 4db4e244ba50bb188b209700dbad63f2 329 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 5 317 34.587 T 29-03-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM354_RS13740 249060494763bf08cf385a5e0e3f9c36 305 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 82 102 4.3E-71 T 29-03-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AM354_RS13740 249060494763bf08cf385a5e0e3f9c36 305 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 139 159 4.3E-71 T 29-03-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AM354_RS13740 249060494763bf08cf385a5e0e3f9c36 305 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 162 177 4.3E-71 T 29-03-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AM354_RS13740 249060494763bf08cf385a5e0e3f9c36 305 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 113 137 4.3E-71 T 29-03-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AM354_RS13740 249060494763bf08cf385a5e0e3f9c36 305 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 253 269 4.3E-71 T 29-03-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AM354_RS13740 249060494763bf08cf385a5e0e3f9c36 305 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 61 76 4.3E-71 T 29-03-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AM354_RS13740 249060494763bf08cf385a5e0e3f9c36 305 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 9 292 4.4E-150 T 29-03-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AM354_RS13740 249060494763bf08cf385a5e0e3f9c36 305 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 7 293 62.659 T 29-03-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AM354_RS13740 249060494763bf08cf385a5e0e3f9c36 305 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 7 301 4.0E-176 T 29-03-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AM354_RS13740 249060494763bf08cf385a5e0e3f9c36 305 Gene3D G3DSA:3.30.930.10 1 214 1.1E-87 T 29-03-2018 AM354_RS13740 249060494763bf08cf385a5e0e3f9c36 305 SUPERFAMILY SSF55681 8 292 6.84E-135 T 29-03-2018 AM354_RS13740 249060494763bf08cf385a5e0e3f9c36 305 Gene3D G3DSA:1.20.58.180 216 294 1.3E-32 T 29-03-2018 AM354_RS13555 c709ae194348beb932e5374e7abc44bd 388 Gene3D G3DSA:1.20.1250.20 3 189 3.8E-25 T 29-03-2018 AM354_RS13555 c709ae194348beb932e5374e7abc44bd 388 Pfam PF07690 Major Facilitator Superfamily 11 324 3.9E-32 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS13555 c709ae194348beb932e5374e7abc44bd 388 Gene3D G3DSA:1.20.1250.20 190 384 6.9E-16 T 29-03-2018 AM354_RS13555 c709ae194348beb932e5374e7abc44bd 388 SUPERFAMILY SSF103473 6 378 1.09E-52 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS07810 b4a65370b059667b7d60db4d7c107fa9 340 Pfam PF01497 Periplasmic binding protein 61 304 1.1E-18 T 29-03-2018 IPR002491 ABC transporter periplasmic binding domain GO:0005488 AM354_RS07810 b4a65370b059667b7d60db4d7c107fa9 340 SUPERFAMILY SSF53807 50 324 4.71E-37 T 29-03-2018 AM354_RS07810 b4a65370b059667b7d60db4d7c107fa9 340 Gene3D G3DSA:3.40.50.1980 164 328 3.4E-27 T 29-03-2018 AM354_RS07810 b4a65370b059667b7d60db4d7c107fa9 340 Gene3D G3DSA:3.40.50.1980 29 163 1.7E-17 T 29-03-2018 AM354_RS01930 46d7d1c58b3320780a460e2f9b4a3cf6 475 Gene3D G3DSA:1.20.1600.10 13 462 2.2E-89 T 29-03-2018 AM354_RS01930 46d7d1c58b3320780a460e2f9b4a3cf6 475 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 5 456 1.7E-112 T 29-03-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 AM354_RS01930 46d7d1c58b3320780a460e2f9b4a3cf6 475 Pfam PF02321 Outer membrane efflux protein 274 454 4.8E-29 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 AM354_RS01930 46d7d1c58b3320780a460e2f9b4a3cf6 475 Pfam PF02321 Outer membrane efflux protein 58 245 5.0E-21 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 AM354_RS01930 46d7d1c58b3320780a460e2f9b4a3cf6 475 SUPERFAMILY SSF56954 3 456 7.46E-95 T 29-03-2018 AM354_RS22395 0e02e809ab9af48fa6188860d72a65bd 300 Gene3D G3DSA:3.40.190.10 179 263 7.3E-22 T 29-03-2018 AM354_RS22395 0e02e809ab9af48fa6188860d72a65bd 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 3.9E-19 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS22395 0e02e809ab9af48fa6188860d72a65bd 300 SUPERFAMILY SSF46785 8 114 5.21E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS22395 0e02e809ab9af48fa6188860d72a65bd 300 Gene3D G3DSA:1.10.10.10 6 90 9.6E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS22395 0e02e809ab9af48fa6188860d72a65bd 300 Pfam PF03466 LysR substrate binding domain 91 293 4.6E-40 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS22395 0e02e809ab9af48fa6188860d72a65bd 300 SUPERFAMILY SSF53850 93 296 1.03E-38 T 29-03-2018 AM354_RS22395 0e02e809ab9af48fa6188860d72a65bd 300 Gene3D G3DSA:3.40.190.10 95 178 4.0E-10 T 29-03-2018 AM354_RS17890 a9d978c89833590e454522e7840fb4e6 226 TIGRFAM TIGR01387 cztR_silR_copR: heavy metal response regulator 4 221 4.5E-119 T 29-03-2018 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response GO:0003677|GO:0006355 AM354_RS17890 a9d978c89833590e454522e7840fb4e6 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 221 1.6E-24 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS17890 a9d978c89833590e454522e7840fb4e6 226 Gene3D G3DSA:3.40.50.2300 1 121 9.2E-33 T 29-03-2018 AM354_RS17890 a9d978c89833590e454522e7840fb4e6 226 SMART SM00448 2 113 4.5E-40 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS17890 a9d978c89833590e454522e7840fb4e6 226 SMART SM00862 146 221 1.2E-23 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS17890 a9d978c89833590e454522e7840fb4e6 226 Gene3D G3DSA:1.10.10.10 122 226 1.3E-27 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS17890 a9d978c89833590e454522e7840fb4e6 226 Pfam PF00072 Response regulator receiver domain 4 114 4.9E-26 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS17890 a9d978c89833590e454522e7840fb4e6 226 SUPERFAMILY SSF52172 1 175 4.07E-39 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS19105 5b83115cb34528fcd4a053895c2f214b 265 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS19105 5b83115cb34528fcd4a053895c2f214b 265 Gene3D G3DSA:3.40.50.300 3 244 7.1E-58 T 29-03-2018 AM354_RS19105 5b83115cb34528fcd4a053895c2f214b 265 SUPERFAMILY SSF52540 13 239 7.73E-61 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS19105 5b83115cb34528fcd4a053895c2f214b 265 Pfam PF00005 ABC transporter 27 176 4.2E-31 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS19105 5b83115cb34528fcd4a053895c2f214b 265 SMART SM00382 36 224 3.7E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS02465 326956ffeb7f3e697ff63581f5fc9b73 305 SUPERFAMILY SSF103481 192 289 1.22E-9 T 29-03-2018 AM354_RS02465 326956ffeb7f3e697ff63581f5fc9b73 305 Pfam PF00892 EamA-like transporter family 3 135 9.6E-11 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM354_RS02465 326956ffeb7f3e697ff63581f5fc9b73 305 Pfam PF00892 EamA-like transporter family 163 286 1.6E-14 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM354_RS02465 326956ffeb7f3e697ff63581f5fc9b73 305 SUPERFAMILY SSF103481 36 138 2.48E-13 T 29-03-2018 AM354_RS14480 4cef409645b1f0ebab71246857487d59 464 Pfam PF00672 HAMP domain 184 234 6.4E-7 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM354_RS14480 4cef409645b1f0ebab71246857487d59 464 SMART SM00387 345 455 7.7E-31 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS14480 4cef409645b1f0ebab71246857487d59 464 Pfam PF00512 His Kinase A (phospho-acceptor) domain 239 298 5.3E-14 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS14480 4cef409645b1f0ebab71246857487d59 464 PRINTS PR00344 Bacterial sensor protein C-terminal signature 415 433 1.6E-13 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS14480 4cef409645b1f0ebab71246857487d59 464 PRINTS PR00344 Bacterial sensor protein C-terminal signature 398 408 1.6E-13 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS14480 4cef409645b1f0ebab71246857487d59 464 PRINTS PR00344 Bacterial sensor protein C-terminal signature 380 394 1.6E-13 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS14480 4cef409645b1f0ebab71246857487d59 464 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 347 454 3.8E-19 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS14480 4cef409645b1f0ebab71246857487d59 464 SUPERFAMILY SSF55874 289 455 1.44E-37 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS14480 4cef409645b1f0ebab71246857487d59 464 Pfam PF16527 Two-component sensor protein CpxA, periplasmic domain 82 160 1.2E-10 T 29-03-2018 IPR032404 Two-component sensor protein CpxA, periplasmic domain AM354_RS14480 4cef409645b1f0ebab71246857487d59 464 SUPERFAMILY SSF47384 224 298 2.94E-16 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS14480 4cef409645b1f0ebab71246857487d59 464 Gene3D G3DSA:3.30.565.10 303 457 2.0E-38 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS14480 4cef409645b1f0ebab71246857487d59 464 Gene3D G3DSA:1.10.287.130 228 296 1.6E-15 T 29-03-2018 AM354_RS14480 4cef409645b1f0ebab71246857487d59 464 SMART SM00388 238 300 2.5E-15 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS14480 4cef409645b1f0ebab71246857487d59 464 SMART SM00304 184 237 6.1E-9 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM354_RS03930 2bad6ba1a5fb7f52bfd8b08fd0883c61 382 SUPERFAMILY SSF49373 186 256 6.67E-5 T 29-03-2018 IPR008964 Invasin/intimin cell-adhesion fragments AM354_RS03930 2bad6ba1a5fb7f52bfd8b08fd0883c61 382 TIGRFAM TIGR01634 tail_P2_I: phage tail protein I 9 131 1.2E-30 T 29-03-2018 IPR006521 Tail protein I AM354_RS03930 2bad6ba1a5fb7f52bfd8b08fd0883c61 382 Pfam PF09684 Phage tail protein (Tail_P2_I) 9 148 4.9E-37 T 29-03-2018 IPR006521 Tail protein I AM354_RS03930 2bad6ba1a5fb7f52bfd8b08fd0883c61 382 Gene3D G3DSA:3.10.100.10 262 365 3.7E-5 T 29-03-2018 IPR016186 C-type lectin-like/link domain AM354_RS03930 2bad6ba1a5fb7f52bfd8b08fd0883c61 382 Gene3D G3DSA:2.60.40.1380 140 259 1.0E-5 T 29-03-2018 AM354_RS05770 25ddc8d907d8c6cdf9a50a3e27ba432a 72 Gene3D G3DSA:2.40.50.140 1 72 3.1E-35 T 29-03-2018 AM354_RS05770 25ddc8d907d8c6cdf9a50a3e27ba432a 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 71 1.3E-38 T 29-03-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 AM354_RS05770 25ddc8d907d8c6cdf9a50a3e27ba432a 72 SUPERFAMILY SSF50249 1 70 1.18E-28 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS05770 25ddc8d907d8c6cdf9a50a3e27ba432a 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 27.17 T 29-03-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 AM354_RS05770 25ddc8d907d8c6cdf9a50a3e27ba432a 72 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 3.1E-27 T 29-03-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 AM354_RS05770 25ddc8d907d8c6cdf9a50a3e27ba432a 72 SMART SM00316 4 72 4.3E-7 T 29-03-2018 IPR022967 RNA-binding domain, S1 AM354_RS14385 625b4ce046b80d262972d470a15e9989 325 SUPERFAMILY SSF53448 6 237 7.97E-46 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS14385 625b4ce046b80d262972d470a15e9989 325 Pfam PF00535 Glycosyl transferase family 2 9 129 1.7E-28 T 29-03-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AM354_RS14385 625b4ce046b80d262972d470a15e9989 325 Gene3D G3DSA:3.90.550.10 1 299 7.8E-39 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS10050 74a0c8de1a91a5199ade8e4124c6ea08 373 SMART SM00830 9 89 4.5E-31 T 29-03-2018 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AM354_RS10050 74a0c8de1a91a5199ade8e4124c6ea08 373 Pfam PF01817 Chorismate mutase type II 9 83 1.3E-20 T 29-03-2018 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AM354_RS10050 74a0c8de1a91a5199ade8e4124c6ea08 373 Gene3D G3DSA:1.10.3660.10 249 372 7.3E-33 T 29-03-2018 AM354_RS10050 74a0c8de1a91a5199ade8e4124c6ea08 373 Gene3D G3DSA:3.40.50.720 92 247 1.1E-26 T 29-03-2018 AM354_RS10050 74a0c8de1a91a5199ade8e4124c6ea08 373 SUPERFAMILY SSF51735 91 238 2.79E-40 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS10050 74a0c8de1a91a5199ade8e4124c6ea08 373 SUPERFAMILY SSF48600 4 88 4.4E-24 T 29-03-2018 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AM354_RS10050 74a0c8de1a91a5199ade8e4124c6ea08 373 SUPERFAMILY SSF48179 241 366 1.07E-42 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM354_RS10050 74a0c8de1a91a5199ade8e4124c6ea08 373 Pfam PF02153 Prephenate dehydrogenase 138 344 2.8E-31 T 29-03-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 AM354_RS10050 74a0c8de1a91a5199ade8e4124c6ea08 373 PIRSF PIRSF001499 1 373 2.8E-184 T 29-03-2018 IPR008244 Bifunctional chorismate mutase/prephenate dehydrogenase T-protein GO:0004106|GO:0005737|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+5.4.99.5+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7303|MetaCyc: PWY-7626 AM354_RS10050 74a0c8de1a91a5199ade8e4124c6ea08 373 TIGRFAM TIGR01799 CM_T: chorismate mutase 5 87 1.2E-44 T 29-03-2018 IPR011277 Chorismate mutase, T-protein GO:0004106|GO:0005737|GO:0006571|GO:0055114 KEGG: 00400+5.4.99.5+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7303|MetaCyc: PWY-7626 AM354_RS10050 74a0c8de1a91a5199ade8e4124c6ea08 373 Gene3D G3DSA:1.20.59.10 2 91 1.0E-24 T 29-03-2018 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AM354_RS09150 39a640df53883bd3c6023adc072d146c 200 TIGRFAM TIGR01383 not_thiJ: DJ-1 family protein 5 183 1.9E-62 T 29-03-2018 IPR006287 Protein DJ-1 AM354_RS09150 39a640df53883bd3c6023adc072d146c 200 Pfam PF01965 DJ-1/PfpI family 4 170 2.1E-43 T 29-03-2018 IPR002818 DJ-1/PfpI AM354_RS09150 39a640df53883bd3c6023adc072d146c 200 SUPERFAMILY SSF52317 5 189 1.34E-45 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS09150 39a640df53883bd3c6023adc072d146c 200 Gene3D G3DSA:3.40.50.880 1 197 1.6E-38 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS14020 cc18928ed3415c544d28002abbf65bc7 259 Gene3D G3DSA:1.20.120.220 83 259 1.3E-54 T 29-03-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS14020 cc18928ed3415c544d28002abbf65bc7 259 SUPERFAMILY SSF81336 83 253 1.44E-49 T 29-03-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS14020 cc18928ed3415c544d28002abbf65bc7 259 ProSitePatterns PS00449 ATP synthase a subunit signature. 194 203 - T 29-03-2018 IPR023011 ATP synthase, F0 complex, subunit A, active site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS14020 cc18928ed3415c544d28002abbf65bc7 259 PRINTS PR00123 ATP synthase A subunit signature 92 108 4.2E-15 T 29-03-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS14020 cc18928ed3415c544d28002abbf65bc7 259 PRINTS PR00123 ATP synthase A subunit signature 191 213 4.2E-15 T 29-03-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS14020 cc18928ed3415c544d28002abbf65bc7 259 PRINTS PR00123 ATP synthase A subunit signature 239 254 4.2E-15 T 29-03-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS14020 cc18928ed3415c544d28002abbf65bc7 259 Pfam PF00119 ATP synthase A chain 34 253 2.0E-56 T 29-03-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS14020 cc18928ed3415c544d28002abbf65bc7 259 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 18 254 4.6E-43 T 29-03-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS14020 cc18928ed3415c544d28002abbf65bc7 259 Hamap MF_01393 ATP synthase subunit a [atpB]. 13 259 16.285 T 29-03-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS12110 4ab9e7c2e77976c0360eb54eabef3b0b 323 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 203 215 - T 29-03-2018 IPR033749 Polyprenyl synthetase, conserved site AM354_RS12110 4ab9e7c2e77976c0360eb54eabef3b0b 323 Pfam PF00348 Polyprenyl synthetase 31 262 2.2E-75 T 29-03-2018 IPR000092 Polyprenyl synthetase GO:0008299 AM354_RS12110 4ab9e7c2e77976c0360eb54eabef3b0b 323 SUPERFAMILY SSF48576 5 322 3.36E-100 T 29-03-2018 IPR008949 Isoprenoid synthase domain AM354_RS12110 4ab9e7c2e77976c0360eb54eabef3b0b 323 Gene3D G3DSA:1.10.600.10 1 323 6.2E-102 T 29-03-2018 IPR008949 Isoprenoid synthase domain AM354_RS12110 4ab9e7c2e77976c0360eb54eabef3b0b 323 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 81 95 - T 29-03-2018 IPR033749 Polyprenyl synthetase, conserved site AM354_RS10435 94a737d622923a2f759500526d6ac7d5 261 Gene3D G3DSA:3.40.50.1980 136 261 2.2E-23 T 29-03-2018 AM354_RS10435 94a737d622923a2f759500526d6ac7d5 261 SUPERFAMILY SSF53807 16 257 1.33E-55 T 29-03-2018 AM354_RS10435 94a737d622923a2f759500526d6ac7d5 261 Pfam PF01497 Periplasmic binding protein 19 215 8.0E-21 T 29-03-2018 IPR002491 ABC transporter periplasmic binding domain GO:0005488 AM354_RS10435 94a737d622923a2f759500526d6ac7d5 261 Hamap MF_01000 Vitamin B12-binding protein [btuF]. 2 261 49.05 T 29-03-2018 IPR023544 ABC transporter, vitamin B12-binding protein GO:0015889|GO:0031419|GO:0042597 AM354_RS10435 94a737d622923a2f759500526d6ac7d5 261 Gene3D G3DSA:3.40.50.1980 15 135 2.1E-27 T 29-03-2018 AM354_RS15830 0aace467ba2e90381acbdcb5b694229d 191 SUPERFAMILY SSF52317 1 190 3.28E-53 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS15830 0aace467ba2e90381acbdcb5b694229d 191 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 191 7.2E-96 T 29-03-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain GO:0008152 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AM354_RS15830 0aace467ba2e90381acbdcb5b694229d 191 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 44 58 9.2E-6 T 29-03-2018 AM354_RS15830 0aace467ba2e90381acbdcb5b694229d 191 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 74 90 9.2E-6 T 29-03-2018 AM354_RS15830 0aace467ba2e90381acbdcb5b694229d 191 Gene3D G3DSA:3.40.50.880 1 191 2.3E-56 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS15830 0aace467ba2e90381acbdcb5b694229d 191 Pfam PF00117 Glutamine amidotransferase class-I 3 189 9.7E-54 T 29-03-2018 IPR017926 Glutamine amidotransferase AM354_RS15830 0aace467ba2e90381acbdcb5b694229d 191 PRINTS PR00096 Glutamine amidotransferase superfamily signature 74 85 7.9E-14 T 29-03-2018 AM354_RS15830 0aace467ba2e90381acbdcb5b694229d 191 PRINTS PR00096 Glutamine amidotransferase superfamily signature 168 181 7.9E-14 T 29-03-2018 AM354_RS15830 0aace467ba2e90381acbdcb5b694229d 191 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 7.9E-14 T 29-03-2018 AM354_RS15830 0aace467ba2e90381acbdcb5b694229d 191 PRINTS PR00097 Anthranilate synthase component II signature 119 131 5.5E-37 T 29-03-2018 AM354_RS15830 0aace467ba2e90381acbdcb5b694229d 191 PRINTS PR00097 Anthranilate synthase component II signature 47 56 5.5E-37 T 29-03-2018 AM354_RS15830 0aace467ba2e90381acbdcb5b694229d 191 PRINTS PR00097 Anthranilate synthase component II signature 168 181 5.5E-37 T 29-03-2018 AM354_RS15830 0aace467ba2e90381acbdcb5b694229d 191 PRINTS PR00097 Anthranilate synthase component II signature 2 16 5.5E-37 T 29-03-2018 AM354_RS15830 0aace467ba2e90381acbdcb5b694229d 191 PRINTS PR00097 Anthranilate synthase component II signature 74 85 5.5E-37 T 29-03-2018 AM354_RS15830 0aace467ba2e90381acbdcb5b694229d 191 PRINTS PR00097 Anthranilate synthase component II signature 99 107 5.5E-37 T 29-03-2018 AM354_RS21225 a2d6d1fff6251e3dcbdfdaf0bc88d613 164 SUPERFAMILY SSF46785 2 133 5.93E-37 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS21225 a2d6d1fff6251e3dcbdfdaf0bc88d613 164 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 131 1.9E-47 T 29-03-2018 IPR000944 Transcription regulator Rrf2-type AM354_RS21225 a2d6d1fff6251e3dcbdfdaf0bc88d613 164 Gene3D G3DSA:1.10.10.10 1 140 1.4E-31 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS21225 a2d6d1fff6251e3dcbdfdaf0bc88d613 164 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 29-03-2018 IPR030489 Transcription regulator Rrf2-type, conserved site AM354_RS21225 a2d6d1fff6251e3dcbdfdaf0bc88d613 164 TIGRFAM TIGR02010 IscR: iron-sulfur cluster assembly transcription factor IscR 1 134 4.1E-67 T 29-03-2018 IPR010242 Transcription factor HTH, IscR GO:0003690|GO:0003700|GO:0006355 AM354_RS21225 a2d6d1fff6251e3dcbdfdaf0bc88d613 164 Hamap MF_01176 HTH-type transcriptional regulator IscR [iscR]. 1 164 50.735 T 29-03-2018 IPR010242 Transcription factor HTH, IscR GO:0003690|GO:0003700|GO:0006355 AM354_RS21225 a2d6d1fff6251e3dcbdfdaf0bc88d613 164 Pfam PF02082 Transcriptional regulator 1 83 1.3E-27 T 29-03-2018 IPR000944 Transcription regulator Rrf2-type AM354_RS20305 7c8305a22efe8609ffb822a1f75b67f4 87 SUPERFAMILY SSF101744 1 84 1.36E-29 T 29-03-2018 IPR023534 Rof/RNase P-like Reactome: R-HSA-6784531 AM354_RS20305 7c8305a22efe8609ffb822a1f75b67f4 87 Pfam PF07073 Modulator of Rho-dependent transcription termination (ROF) 9 83 1.6E-28 T 29-03-2018 IPR009778 Modulator of Rho-dependent transcription termination AM354_RS20305 7c8305a22efe8609ffb822a1f75b67f4 87 Gene3D G3DSA:2.30.30.400 10 83 1.3E-25 T 29-03-2018 AM354_RS21050 0aaa2c9ba157afc61a1d8e936db1f56a 243 SUPERFAMILY SSF63892 4 242 2.22E-101 T 29-03-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 AM354_RS21050 0aaa2c9ba157afc61a1d8e936db1f56a 243 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 6 239 7.3E-104 T 29-03-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 AM354_RS21050 0aaa2c9ba157afc61a1d8e936db1f56a 243 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 6 238 8.8E-104 T 29-03-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 AM354_RS21050 0aaa2c9ba157afc61a1d8e936db1f56a 243 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 243 133.211 T 29-03-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 AM354_RS21050 0aaa2c9ba157afc61a1d8e936db1f56a 243 Gene3D G3DSA:3.20.20.70 4 238 9.6E-105 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS17695 d8e364d6b15896716f719a6a574164f6 173 Gene3D G3DSA:1.10.1740.10 1 85 1.6E-15 T 29-03-2018 AM354_RS17695 d8e364d6b15896716f719a6a574164f6 173 Pfam PF04542 Sigma-70 region 2 16 81 1.0E-12 T 29-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS17695 d8e364d6b15896716f719a6a574164f6 173 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 13 164 8.9E-22 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS17695 d8e364d6b15896716f719a6a574164f6 173 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 38 68 - T 29-03-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS17695 d8e364d6b15896716f719a6a574164f6 173 SUPERFAMILY SSF88659 88 164 2.4E-14 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS17695 d8e364d6b15896716f719a6a574164f6 173 Pfam PF08281 Sigma-70, region 4 112 164 3.4E-15 T 29-03-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS17695 d8e364d6b15896716f719a6a574164f6 173 Gene3D G3DSA:1.10.10.10 93 164 2.2E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS17695 d8e364d6b15896716f719a6a574164f6 173 SUPERFAMILY SSF88946 12 101 3.53E-14 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS13550 85c66890d595e0412fe804b4fc59eb26 249 SUPERFAMILY SSF51735 9 239 1.57E-36 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS13550 85c66890d595e0412fe804b4fc59eb26 249 Gene3D G3DSA:3.40.50.720 8 239 1.4E-32 T 29-03-2018 AM354_RS13550 85c66890d595e0412fe804b4fc59eb26 249 Pfam PF01370 NAD dependent epimerase/dehydratase family 10 177 1.3E-18 T 29-03-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AM354_RS17440 79453c1e9daa889f4e0eee4647b1e3d4 273 Gene3D G3DSA:3.40.50.1580 1 273 1.0E-64 T 29-03-2018 AM354_RS17440 79453c1e9daa889f4e0eee4647b1e3d4 273 ProSitePatterns PS01240 Purine and other phosphorylases family 2 signature. 77 118 - T 29-03-2018 IPR018099 Purine phosphorylase, family 2, conserved site GO:0016763 AM354_RS17440 79453c1e9daa889f4e0eee4647b1e3d4 273 SUPERFAMILY SSF53167 5 272 4.97E-86 T 29-03-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AM354_RS17440 79453c1e9daa889f4e0eee4647b1e3d4 273 TIGRFAM TIGR01697 PNPH-PUNA-XAPA: inosine/guanosine/xanthosine phosphorylase family 25 269 1.2E-101 T 29-03-2018 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 AM354_RS17440 79453c1e9daa889f4e0eee4647b1e3d4 273 PIRSF PIRSF000477 2 273 1.6E-106 T 29-03-2018 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 AM354_RS17440 79453c1e9daa889f4e0eee4647b1e3d4 273 TIGRFAM TIGR01699 XAPA: xanthosine phosphorylase 25 270 2.0E-123 T 29-03-2018 IPR010943 Xanthosine phosphorylase GO:0004731|GO:0005737|GO:0055086 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 AM354_RS17440 79453c1e9daa889f4e0eee4647b1e3d4 273 Pfam PF01048 Phosphorylase superfamily 25 270 3.6E-46 T 29-03-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AM354_RS23815 bce13b3f507ce5736fe4444769b0a3d3 289 Pfam PF01261 Xylose isomerase-like TIM barrel 27 237 1.4E-33 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM354_RS23815 bce13b3f507ce5736fe4444769b0a3d3 289 Gene3D G3DSA:3.20.20.150 1 288 8.8E-46 T 29-03-2018 AM354_RS23815 bce13b3f507ce5736fe4444769b0a3d3 289 SUPERFAMILY SSF51658 17 279 1.96E-50 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM354_RS23815 bce13b3f507ce5736fe4444769b0a3d3 289 TIGRFAM TIGR00542 hxl6Piso_put: putative hexulose-6-phosphate isomerase 8 288 1.7E-118 T 29-03-2018 IPR004560 L-ribulose-5-phosphate 3-epimerase GO:0005975|GO:0016861 KEGG: 00053+5.1.3.22|MetaCyc: PWY-6961 AM354_RS23670 1b0b55d4070b6ee65a5e31c726c8da0b 288 Gene3D G3DSA:3.40.190.10 88 177 1.3E-25 T 29-03-2018 AM354_RS23670 1b0b55d4070b6ee65a5e31c726c8da0b 288 Gene3D G3DSA:1.10.10.10 1 84 9.8E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS23670 1b0b55d4070b6ee65a5e31c726c8da0b 288 SUPERFAMILY SSF53850 89 286 9.38E-50 T 29-03-2018 AM354_RS23670 1b0b55d4070b6ee65a5e31c726c8da0b 288 Pfam PF03466 LysR substrate binding domain 87 286 4.3E-53 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS23670 1b0b55d4070b6ee65a5e31c726c8da0b 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.1E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS23670 1b0b55d4070b6ee65a5e31c726c8da0b 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.1E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS23670 1b0b55d4070b6ee65a5e31c726c8da0b 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.1E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS23670 1b0b55d4070b6ee65a5e31c726c8da0b 288 SUPERFAMILY SSF46785 2 109 3.27E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS23670 1b0b55d4070b6ee65a5e31c726c8da0b 288 Gene3D G3DSA:3.40.190.10 178 264 2.5E-21 T 29-03-2018 AM354_RS23670 1b0b55d4070b6ee65a5e31c726c8da0b 288 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 2.5E-15 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS13985 aa81f73169408095bafa867f84fde90b 139 SUPERFAMILY SSF46604 89 137 1.46E-15 T 29-03-2018 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS13985 aa81f73169408095bafa867f84fde90b 139 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 10 90 2.0E-37 T 29-03-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS13985 aa81f73169408095bafa867f84fde90b 139 SUPERFAMILY SSF51344 3 86 3.01E-25 T 29-03-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS13985 aa81f73169408095bafa867f84fde90b 139 Gene3D G3DSA:2.60.15.10 1 90 2.1E-28 T 29-03-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS13985 aa81f73169408095bafa867f84fde90b 139 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 6 84 1.9E-30 T 29-03-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS13985 aa81f73169408095bafa867f84fde90b 139 Pfam PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain 89 133 2.6E-13 T 29-03-2018 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS13985 aa81f73169408095bafa867f84fde90b 139 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 3 131 21.762 T 29-03-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS13985 aa81f73169408095bafa867f84fde90b 139 Gene3D G3DSA:1.20.5.440 91 131 3.5E-13 T 29-03-2018 AM354_RS13985 aa81f73169408095bafa867f84fde90b 139 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 4 133 3.7E-47 T 29-03-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS07455 c34aa3d6e6b15b1d70f46ac1539bafa7 568 SUPERFAMILY SSF56176 6 267 6.54E-72 T 29-03-2018 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AM354_RS07455 c34aa3d6e6b15b1d70f46ac1539bafa7 568 Pfam PF09330 D-lactate dehydrogenase, membrane binding 274 563 3.6E-150 T 29-03-2018 IPR015409 D-lactate dehydrogenase, membrane binding, C-terminal GO:0050660|GO:0055085 KEGG: 00620+1.1.1.28|MetaCyc: PWY-6454|MetaCyc: PWY-6901 AM354_RS07455 c34aa3d6e6b15b1d70f46ac1539bafa7 568 Gene3D G3DSA:3.30.465.10 103 264 9.1E-79 T 29-03-2018 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AM354_RS07455 c34aa3d6e6b15b1d70f46ac1539bafa7 568 SUPERFAMILY SSF55103 272 563 2.62E-118 T 29-03-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 AM354_RS07455 c34aa3d6e6b15b1d70f46ac1539bafa7 568 PIRSF PIRSF000101 1 565 1.6E-295 T 29-03-2018 IPR012256 D-lactate dehydrogenase GO:0004457|GO:0005887|GO:0006089|GO:0050660|GO:0051287 KEGG: 00620+1.1.1.28|MetaCyc: PWY-6454|MetaCyc: PWY-6901 AM354_RS07455 c34aa3d6e6b15b1d70f46ac1539bafa7 568 Gene3D G3DSA:3.30.70.610 265 344 3.8E-21 T 29-03-2018 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.1.28|MetaCyc: PWY-6454|MetaCyc: PWY-6901 AM354_RS07455 c34aa3d6e6b15b1d70f46ac1539bafa7 568 Gene3D G3DSA:3.30.70.610 345 430 2.8E-30 T 29-03-2018 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.1.28|MetaCyc: PWY-6454|MetaCyc: PWY-6901 AM354_RS07455 c34aa3d6e6b15b1d70f46ac1539bafa7 568 Gene3D G3DSA:3.30.43.10 1 99 2.1E-11 T 29-03-2018 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 AM354_RS07455 c34aa3d6e6b15b1d70f46ac1539bafa7 568 Pfam PF01565 FAD binding domain 43 162 8.0E-9 T 29-03-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AM354_RS07455 c34aa3d6e6b15b1d70f46ac1539bafa7 568 Gene3D G3DSA:3.30.1370.20 431 514 1.9E-43 T 29-03-2018 IPR016173 D-lactate dehydrogenase, C-terminal subdomain 2 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.1.28|MetaCyc: PWY-6454|MetaCyc: PWY-6901 AM354_RS23315 16ca58b85e9486ba04b2ddef8247fb6d 953 SUPERFAMILY SSF55874 525 693 2.36E-47 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS23315 16ca58b85e9486ba04b2ddef8247fb6d 953 SUPERFAMILY SSF47384 455 537 1.96E-19 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS23315 16ca58b85e9486ba04b2ddef8247fb6d 953 Pfam PF00072 Response regulator receiver domain 831 939 2.7E-30 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS23315 16ca58b85e9486ba04b2ddef8247fb6d 953 Pfam PF00512 His Kinase A (phospho-acceptor) domain 471 535 4.3E-16 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS23315 16ca58b85e9486ba04b2ddef8247fb6d 953 SMART SM00387 583 694 5.2E-39 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS23315 16ca58b85e9486ba04b2ddef8247fb6d 953 SMART SM00448 828 939 1.7E-38 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS23315 16ca58b85e9486ba04b2ddef8247fb6d 953 SMART SM00388 471 536 2.0E-19 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS23315 16ca58b85e9486ba04b2ddef8247fb6d 953 Gene3D G3DSA:3.30.450.20 212 474 8.1E-7 T 29-03-2018 AM354_RS23315 16ca58b85e9486ba04b2ddef8247fb6d 953 PRINTS PR00344 Bacterial sensor protein C-terminal signature 619 633 1.6E-17 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS23315 16ca58b85e9486ba04b2ddef8247fb6d 953 PRINTS PR00344 Bacterial sensor protein C-terminal signature 654 672 1.6E-17 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS23315 16ca58b85e9486ba04b2ddef8247fb6d 953 PRINTS PR00344 Bacterial sensor protein C-terminal signature 678 691 1.6E-17 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS23315 16ca58b85e9486ba04b2ddef8247fb6d 953 PRINTS PR00344 Bacterial sensor protein C-terminal signature 637 647 1.6E-17 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS23315 16ca58b85e9486ba04b2ddef8247fb6d 953 Gene3D G3DSA:3.30.565.10 531 694 3.7E-45 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS23315 16ca58b85e9486ba04b2ddef8247fb6d 953 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 583 692 1.4E-27 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS23315 16ca58b85e9486ba04b2ddef8247fb6d 953 SUPERFAMILY SSF52172 703 816 2.48E-35 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS23315 16ca58b85e9486ba04b2ddef8247fb6d 953 Gene3D G3DSA:3.40.50.2300 821 953 3.1E-42 T 29-03-2018 AM354_RS23315 16ca58b85e9486ba04b2ddef8247fb6d 953 Pfam PF09456 RcsC Alpha-Beta-Loop (ABL) 711 801 5.3E-32 T 29-03-2018 IPR019017 Signal transduction histidine kinase RcsC, alpha-beta loop, C-terminal GO:0000160|GO:0004673|GO:0004871|GO:0005524|GO:0005886|GO:0006355|GO:0016021|GO:0018106 AM354_RS23315 16ca58b85e9486ba04b2ddef8247fb6d 953 SUPERFAMILY SSF52172 827 950 5.27E-40 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS23315 16ca58b85e9486ba04b2ddef8247fb6d 953 Hamap MF_00979 Sensor histidine kinase RcsC [rcsC]. 24 944 27.166 T 29-03-2018 IPR030856 Sensor histidine kinase RcsC GO:0000155|GO:0000160|GO:0016021|GO:0042710 AM354_RS23315 16ca58b85e9486ba04b2ddef8247fb6d 953 Gene3D G3DSA:1.10.287.130 475 530 8.4E-19 T 29-03-2018 AM354_RS11745 093e60a79b095b63184a6d9ea16cbb1c 995 Gene3D G3DSA:2.30.38.10 309 389 8.7E-24 T 29-03-2018 AM354_RS11745 093e60a79b095b63184a6d9ea16cbb1c 995 ProSitePatterns PS00455 Putative AMP-binding domain signature. 149 160 - T 29-03-2018 IPR020845 AMP-binding, conserved site AM354_RS11745 093e60a79b095b63184a6d9ea16cbb1c 995 Pfam PF07993 Male sterility protein 623 866 5.4E-50 T 29-03-2018 IPR013120 Male sterility, NAD-binding Reactome: R-HSA-8848584 AM354_RS11745 093e60a79b095b63184a6d9ea16cbb1c 995 Pfam PF00501 AMP-binding enzyme 11 399 4.0E-92 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM354_RS11745 093e60a79b095b63184a6d9ea16cbb1c 995 TIGRFAM TIGR01746 Thioester-redct: thioester reductase domain 621 984 1.7E-100 T 29-03-2018 IPR010080 Thioester reductase-like domain AM354_RS11745 093e60a79b095b63184a6d9ea16cbb1c 995 SUPERFAMILY SSF47336 501 573 2.09E-15 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS11745 093e60a79b095b63184a6d9ea16cbb1c 995 SUPERFAMILY SSF51735 944 963 1.35E-32 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS11745 093e60a79b095b63184a6d9ea16cbb1c 995 SUPERFAMILY SSF51735 618 915 1.35E-32 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS11745 093e60a79b095b63184a6d9ea16cbb1c 995 Gene3D G3DSA:3.30.300.30 394 515 4.0E-26 T 29-03-2018 AM354_RS11745 093e60a79b095b63184a6d9ea16cbb1c 995 Gene3D G3DSA:3.40.50.980 155 306 3.2E-27 T 29-03-2018 AM354_RS11745 093e60a79b095b63184a6d9ea16cbb1c 995 SMART SM00823 Phosphopantetheine attachment site 508 577 0.0072 T 29-03-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 AM354_RS11745 093e60a79b095b63184a6d9ea16cbb1c 995 SUPERFAMILY SSF56801 4 521 4.58E-130 T 29-03-2018 AM354_RS11745 093e60a79b095b63184a6d9ea16cbb1c 995 Gene3D G3DSA:3.40.50.980 1 154 1.1E-40 T 29-03-2018 AM354_RS11745 093e60a79b095b63184a6d9ea16cbb1c 995 Gene3D G3DSA:1.10.1200.10 516 584 6.2E-19 T 29-03-2018 AM354_RS11745 093e60a79b095b63184a6d9ea16cbb1c 995 ProSitePatterns PS00012 Phosphopantetheine attachment site. 532 547 - T 29-03-2018 IPR006162 Phosphopantetheine attachment site AM354_RS11745 093e60a79b095b63184a6d9ea16cbb1c 995 Pfam PF00550 Phosphopantetheine attachment site 511 572 3.0E-13 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS11745 093e60a79b095b63184a6d9ea16cbb1c 995 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 30 423 1.4E-115 T 29-03-2018 IPR010071 Amino acid adenylation domain AM354_RS11745 093e60a79b095b63184a6d9ea16cbb1c 995 Gene3D G3DSA:3.40.50.720 609 984 8.6E-31 T 29-03-2018 AM354_RS22795 0aa92c798a8c7d217dfd4db8d99c4fa9 361 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 29-03-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AM354_RS22795 0aa92c798a8c7d217dfd4db8d99c4fa9 361 Hamap MF_00300 Chorismate synthase [aroC]. 10 352 38.503 T 29-03-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AM354_RS22795 0aa92c798a8c7d217dfd4db8d99c4fa9 361 Pfam PF01264 Chorismate synthase 10 345 1.5E-144 T 29-03-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AM354_RS22795 0aa92c798a8c7d217dfd4db8d99c4fa9 361 PIRSF PIRSF001456 3 360 1.3E-144 T 29-03-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AM354_RS22795 0aa92c798a8c7d217dfd4db8d99c4fa9 361 ProSitePatterns PS00788 Chorismate synthase signature 2. 124 140 - T 29-03-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AM354_RS22795 0aa92c798a8c7d217dfd4db8d99c4fa9 361 Gene3D G3DSA:3.60.150.10 3 359 5.4E-163 T 29-03-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AM354_RS22795 0aa92c798a8c7d217dfd4db8d99c4fa9 361 ProSitePatterns PS00789 Chorismate synthase signature 3. 319 335 - T 29-03-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AM354_RS22795 0aa92c798a8c7d217dfd4db8d99c4fa9 361 TIGRFAM TIGR00033 aroC: chorismate synthase 10 350 3.3E-141 T 29-03-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AM354_RS22795 0aa92c798a8c7d217dfd4db8d99c4fa9 361 SUPERFAMILY SSF103263 4 351 7.06E-150 T 29-03-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AM354_RS09230 de7a2219fe191e6ce9e1b925ac201889 615 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 3 615 50.61 T 29-03-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 AM354_RS09230 de7a2219fe191e6ce9e1b925ac201889 615 Pfam PF02355 Protein export membrane protein 433 601 3.9E-16 T 29-03-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial AM354_RS09230 de7a2219fe191e6ce9e1b925ac201889 615 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 123 601 1.0E-152 T 29-03-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 AM354_RS09230 de7a2219fe191e6ce9e1b925ac201889 615 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 345 594 2.2E-83 T 29-03-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AM354_RS09230 de7a2219fe191e6ce9e1b925ac201889 615 Pfam PF07549 SecD/SecF GG Motif 119 140 3.7E-6 T 29-03-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site AM354_RS09230 de7a2219fe191e6ce9e1b925ac201889 615 Gene3D G3DSA:1.20.1640.10 377 607 2.4E-31 T 29-03-2018 AM354_RS09230 de7a2219fe191e6ce9e1b925ac201889 615 SUPERFAMILY SSF82866 410 606 2.75E-41 T 29-03-2018 AM354_RS09230 de7a2219fe191e6ce9e1b925ac201889 615 Pfam PF13721 SecD export protein N-terminal TM region 2 103 2.2E-37 T 29-03-2018 IPR027398 SecD export protein N-terminal TM domain AM354_RS25715 16790d5f4a72c9ce2b7487093845aed5 1253 Gene3D G3DSA:4.10.1200.10 1 26 1.9E-12 T 29-03-2018 AM354_RS25715 16790d5f4a72c9ce2b7487093845aed5 1253 Gene3D G3DSA:2.40.40.20 1050 1240 1.2E-45 T 29-03-2018 AM354_RS25715 16790d5f4a72c9ce2b7487093845aed5 1253 Gene3D G3DSA:3.40.228.10 225 649 2.3E-104 T 29-03-2018 AM354_RS25715 16790d5f4a72c9ce2b7487093845aed5 1253 Gene3D G3DSA:3.40.50.740 108 213 1.3E-5 T 29-03-2018 AM354_RS25715 16790d5f4a72c9ce2b7487093845aed5 1253 Pfam PF01568 Molydopterin dinucleotide binding domain 1090 1204 6.9E-20 T 29-03-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 AM354_RS25715 16790d5f4a72c9ce2b7487093845aed5 1253 Pfam PF00384 Molybdopterin oxidoreductase 108 835 1.5E-172 T 29-03-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS25715 16790d5f4a72c9ce2b7487093845aed5 1253 Gene3D G3DSA:3.30.2070.10 797 837 8.0E-6 T 29-03-2018 AM354_RS25715 16790d5f4a72c9ce2b7487093845aed5 1253 SUPERFAMILY SSF50692 1082 1238 5.2E-47 T 29-03-2018 IPR009010 Aspartate decarboxylase-like domain AM354_RS25715 16790d5f4a72c9ce2b7487093845aed5 1253 Gene3D G3DSA:3.40.50.740 650 792 2.2E-34 T 29-03-2018 AM354_RS25715 16790d5f4a72c9ce2b7487093845aed5 1253 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 779 796 - T 29-03-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 AM354_RS25715 16790d5f4a72c9ce2b7487093845aed5 1253 SUPERFAMILY SSF53706 4 1072 0.0 T 29-03-2018 AM354_RS25715 16790d5f4a72c9ce2b7487093845aed5 1253 TIGRFAM TIGR01580 narG: nitrate reductase, alpha subunit 2 1237 0.0 T 29-03-2018 IPR006468 Nitrate reductase, alpha subunit GO:0008940|GO:0009325|GO:0042126|GO:0055114 KEGG: 00910+1.7.99.4 AM354_RS25715 16790d5f4a72c9ce2b7487093845aed5 1253 Pfam PF14710 Respiratory nitrate reductase alpha N-terminal 3 40 4.4E-15 T 29-03-2018 IPR028189 Nitrate reductase, alpha subunit, N-terminal KEGG: 00910+1.7.99.4 AM354_RS25715 16790d5f4a72c9ce2b7487093845aed5 1253 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 48 66 - T 29-03-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 KEGG: 00910+1.7.99.4 AM354_RS25715 16790d5f4a72c9ce2b7487093845aed5 1253 Gene3D G3DSA:2.20.25.90 55 98 1.3E-28 T 29-03-2018 AM354_RS25715 16790d5f4a72c9ce2b7487093845aed5 1253 SMART SM00926 43 105 4.1E-8 T 29-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS00235 04ff025024b48e180f1b0b536e12f3ee 397 Gene3D G3DSA:1.20.1250.20 2 186 3.5E-29 T 29-03-2018 AM354_RS00235 04ff025024b48e180f1b0b536e12f3ee 397 PRINTS PR01035 Tetracycline resistance protein signature 302 322 1.8E-7 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AM354_RS00235 04ff025024b48e180f1b0b536e12f3ee 397 PRINTS PR01035 Tetracycline resistance protein signature 44 63 1.8E-7 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AM354_RS00235 04ff025024b48e180f1b0b536e12f3ee 397 PRINTS PR01035 Tetracycline resistance protein signature 129 151 1.8E-7 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AM354_RS00235 04ff025024b48e180f1b0b536e12f3ee 397 PRINTS PR01035 Tetracycline resistance protein signature 14 30 1.8E-7 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AM354_RS00235 04ff025024b48e180f1b0b536e12f3ee 397 Pfam PF07690 Major Facilitator Superfamily 10 351 1.9E-41 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS00235 04ff025024b48e180f1b0b536e12f3ee 397 SUPERFAMILY SSF103473 4 379 3.14E-56 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS00235 04ff025024b48e180f1b0b536e12f3ee 397 ProSitePatterns PS00216 Sugar transport proteins signature 1. 58 74 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM354_RS00235 04ff025024b48e180f1b0b536e12f3ee 397 Gene3D G3DSA:1.20.1250.20 194 392 6.0E-15 T 29-03-2018 AM354_RS00235 04ff025024b48e180f1b0b536e12f3ee 397 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 3 373 3.4E-70 T 29-03-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 AM354_RS19915 7a99c78c77f716876bb1505fb4fd0dc9 307 Pfam PF03466 LysR substrate binding domain 93 294 6.7E-41 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS19915 7a99c78c77f716876bb1505fb4fd0dc9 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 1.3E-15 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS19915 7a99c78c77f716876bb1505fb4fd0dc9 307 Gene3D G3DSA:1.10.10.10 1 93 1.2E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS19915 7a99c78c77f716876bb1505fb4fd0dc9 307 SUPERFAMILY SSF46785 2 84 9.25E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS19915 7a99c78c77f716876bb1505fb4fd0dc9 307 SUPERFAMILY SSF53850 94 298 4.48E-41 T 29-03-2018 AM354_RS19915 7a99c78c77f716876bb1505fb4fd0dc9 307 Gene3D G3DSA:3.40.190.10 94 183 8.6E-19 T 29-03-2018 AM354_RS19915 7a99c78c77f716876bb1505fb4fd0dc9 307 Gene3D G3DSA:3.40.190.10 184 266 3.1E-23 T 29-03-2018 AM354_RS25340 2e1a8836b3c0b4acca15781ae3ce323b 260 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 182 260 1.3E-26 T 29-03-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain AM354_RS25340 2e1a8836b3c0b4acca15781ae3ce323b 260 SUPERFAMILY SSF117143 93 222 1.05E-35 T 29-03-2018 AM354_RS25340 2e1a8836b3c0b4acca15781ae3ce323b 260 Pfam PF00460 Flagella basal body rod protein 5 35 8.8E-14 T 29-03-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 AM354_RS25340 2e1a8836b3c0b4acca15781ae3ce323b 260 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 145 243 6.6E-30 T 29-03-2018 IPR020013 Fagellar hook-basal body protein, FlgE/F/G AM354_RS25340 2e1a8836b3c0b4acca15781ae3ce323b 260 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 136 3.3E-49 T 29-03-2018 IPR020013 Fagellar hook-basal body protein, FlgE/F/G AM354_RS25340 2e1a8836b3c0b4acca15781ae3ce323b 260 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 4 259 1.2E-120 T 29-03-2018 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 AM354_RS25340 2e1a8836b3c0b4acca15781ae3ce323b 260 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 29-03-2018 IPR019776 Flagellar basal body rod protein, conserved site AM354_RS06155 db4a4d1ea54a154b9cbdd81576a7a685 310 Gene3D G3DSA:3.40.800.10 5 310 1.5E-105 T 29-03-2018 AM354_RS06155 db4a4d1ea54a154b9cbdd81576a7a685 310 PIRSF PIRSF036979 11 310 1.6E-102 T 29-03-2018 IPR006035 Ureohydrolase GO:0046872 AM354_RS06155 db4a4d1ea54a154b9cbdd81576a7a685 310 PRINTS PR00116 Arginase signature 119 134 1.6E-14 T 29-03-2018 IPR006035 Ureohydrolase GO:0046872 AM354_RS06155 db4a4d1ea54a154b9cbdd81576a7a685 310 PRINTS PR00116 Arginase signature 232 261 1.6E-14 T 29-03-2018 IPR006035 Ureohydrolase GO:0046872 AM354_RS06155 db4a4d1ea54a154b9cbdd81576a7a685 310 SUPERFAMILY SSF52768 11 307 1.8E-102 T 29-03-2018 AM354_RS06155 db4a4d1ea54a154b9cbdd81576a7a685 310 ProSitePatterns PS01053 Arginase family signature. 235 256 - T 29-03-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 AM354_RS06155 db4a4d1ea54a154b9cbdd81576a7a685 310 TIGRFAM TIGR01230 agmatinase: agmatinase 33 305 6.6E-62 T 29-03-2018 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|Reactome: R-HSA-351143 AM354_RS06155 db4a4d1ea54a154b9cbdd81576a7a685 310 Pfam PF00491 Arginase family 33 304 7.2E-91 T 29-03-2018 IPR006035 Ureohydrolase GO:0046872 AM354_RS01965 b9938a3f7b2a7ed14c490b76ae689201 385 SUPERFAMILY SSF111369 51 293 2.09E-63 T 29-03-2018 AM354_RS01965 b9938a3f7b2a7ed14c490b76ae689201 385 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 37 363 5.6E-77 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AM354_RS01965 b9938a3f7b2a7ed14c490b76ae689201 385 Gene3D G3DSA:2.40.50.100 10 88 1.6E-4 T 29-03-2018 AM354_RS01965 b9938a3f7b2a7ed14c490b76ae689201 385 Gene3D G3DSA:1.20.1600.10 89 314 1.3E-23 T 29-03-2018 AM354_RS01965 b9938a3f7b2a7ed14c490b76ae689201 385 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 63 286 2.4E-16 T 29-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AM354_RS02215 c6a547ca541142bd45e3086c462d479c 771 Gene3D G3DSA:3.30.830.10 237 360 4.5E-7 T 29-03-2018 AM354_RS02215 c6a547ca541142bd45e3086c462d479c 771 SUPERFAMILY SSF63411 614 739 4.44E-16 T 29-03-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AM354_RS02215 c6a547ca541142bd45e3086c462d479c 771 SUPERFAMILY SSF63411 7 211 6.95E-37 T 29-03-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AM354_RS02215 c6a547ca541142bd45e3086c462d479c 771 Pfam PF05193 Peptidase M16 inactive domain 178 323 1.7E-8 T 29-03-2018 IPR007863 Peptidase M16, C-terminal AM354_RS02215 c6a547ca541142bd45e3086c462d479c 771 TIGRFAM TIGR02110 PQQ_syn_pqqF: coenzyme PQQ biosynthesis protein PqqF 10 702 2.6E-160 T 29-03-2018 IPR011844 Coenzyme PQQ biosynthesis protein PqqF GO:0004222|GO:0006508|GO:0008270|GO:0018189 AM354_RS02215 c6a547ca541142bd45e3086c462d479c 771 Pfam PF00675 Insulinase (Peptidase family M16) 18 135 2.4E-30 T 29-03-2018 IPR011765 Peptidase M16, N-terminal AM354_RS02215 c6a547ca541142bd45e3086c462d479c 771 Gene3D G3DSA:3.30.830.10 4 221 2.2E-50 T 29-03-2018 AM354_RS02215 c6a547ca541142bd45e3086c462d479c 771 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 36 59 - T 29-03-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 AM354_RS02215 c6a547ca541142bd45e3086c462d479c 771 Gene3D G3DSA:3.30.830.10 597 765 9.5E-13 T 29-03-2018 AM354_RS18275 4250eb0df656e3ffb633e66c84690608 135 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 2.3E-8 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS18275 4250eb0df656e3ffb633e66c84690608 135 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 2.3E-8 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS18275 4250eb0df656e3ffb633e66c84690608 135 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 2.3E-8 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS18275 4250eb0df656e3ffb633e66c84690608 135 TIGRFAM TIGR02047 CadR-PbrR: Cd(II)/Pb(II)-responsive transcriptional regulator 1 127 8.4E-62 T 29-03-2018 IPR011791 Cd(II)/Pb(II)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0045893|GO:0046872 AM354_RS18275 4250eb0df656e3ffb633e66c84690608 135 Gene3D G3DSA:1.10.1660.10 56 135 6.4E-17 T 29-03-2018 AM354_RS18275 4250eb0df656e3ffb633e66c84690608 135 Pfam PF13411 MerR HTH family regulatory protein 1 67 5.7E-19 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS18275 4250eb0df656e3ffb633e66c84690608 135 Gene3D G3DSA:1.10.1660.10 1 55 1.8E-22 T 29-03-2018 AM354_RS18275 4250eb0df656e3ffb633e66c84690608 135 SUPERFAMILY SSF46955 1 119 1.47E-34 T 29-03-2018 IPR009061 Putative DNA-binding domain AM354_RS18275 4250eb0df656e3ffb633e66c84690608 135 SMART SM00422 1 70 3.3E-26 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS15570 97b22d44e58680b3dd92d45aad3ffbdc 191 Gene3D G3DSA:2.60.300.12 1 98 4.1E-17 T 29-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AM354_RS15570 97b22d44e58680b3dd92d45aad3ffbdc 191 Pfam PF01106 NifU-like domain 111 177 8.0E-21 T 29-03-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 AM354_RS15570 97b22d44e58680b3dd92d45aad3ffbdc 191 Hamap MF_01637 Fe/S biogenesis protein NfuA [nfuA]. 1 191 46.37 T 29-03-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 AM354_RS15570 97b22d44e58680b3dd92d45aad3ffbdc 191 SUPERFAMILY SSF117916 95 184 5.45E-25 T 29-03-2018 IPR034904 Fe-S cluster assembly domain AM354_RS15570 97b22d44e58680b3dd92d45aad3ffbdc 191 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 119 177 3.0E-26 T 29-03-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 AM354_RS15570 97b22d44e58680b3dd92d45aad3ffbdc 191 SUPERFAMILY SSF89360 1 97 2.55E-21 T 29-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AM354_RS15570 97b22d44e58680b3dd92d45aad3ffbdc 191 TIGRFAM TIGR03341 YhgI_GntY: IscR-regulated protein YhgI 2 191 1.2E-102 T 29-03-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 AM354_RS15570 97b22d44e58680b3dd92d45aad3ffbdc 191 Pfam PF01521 Iron-sulphur cluster biosynthesis 2 98 2.2E-13 T 29-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AM354_RS15570 97b22d44e58680b3dd92d45aad3ffbdc 191 Gene3D G3DSA:3.30.300.130 102 187 3.0E-26 T 29-03-2018 IPR034904 Fe-S cluster assembly domain AM354_RS10905 a39f12e88742da8ff07c6925ae9b9d6a 317 SUPERFAMILY SSF51569 1 316 1.78E-117 T 29-03-2018 AM354_RS10905 a39f12e88742da8ff07c6925ae9b9d6a 317 ProSitePatterns PS01054 Transaldolase signature 1. 31 39 - T 29-03-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-71336 AM354_RS10905 a39f12e88742da8ff07c6925ae9b9d6a 317 Gene3D G3DSA:3.20.20.70 2 316 2.5E-123 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS10905 a39f12e88742da8ff07c6925ae9b9d6a 317 Hamap MF_00492 Transaldolase [tal]. 2 317 51.794 T 29-03-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-71336 AM354_RS10905 a39f12e88742da8ff07c6925ae9b9d6a 317 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 14 313 1.9E-101 T 29-03-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-71336 AM354_RS10905 a39f12e88742da8ff07c6925ae9b9d6a 317 ProSitePatterns PS00958 Transaldolase active site. 129 146 - T 29-03-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-71336 AM354_RS10905 a39f12e88742da8ff07c6925ae9b9d6a 317 TIGRFAM TIGR00874 talAB: transaldolase 4 316 3.5E-163 T 29-03-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-71336 AM354_RS06570 282beab0fde5432529af51f5098069e8 115 SUPERFAMILY SSF54909 1 99 9.08E-29 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel AM354_RS06570 282beab0fde5432529af51f5098069e8 115 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 77 2.4E-17 T 29-03-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain AM354_RS06570 282beab0fde5432529af51f5098069e8 115 Gene3D G3DSA:3.30.70.100 1 94 2.5E-23 T 29-03-2018 AM354_RS16980 542a8733ae1188571539e073bbfc8670 352 Pfam PF13365 Trypsin-like peptidase domain 77 211 1.6E-30 T 29-03-2018 AM354_RS16980 542a8733ae1188571539e073bbfc8670 352 Pfam PF13180 PDZ domain 276 344 2.7E-12 T 29-03-2018 IPR001478 PDZ domain GO:0005515 AM354_RS16980 542a8733ae1188571539e073bbfc8670 352 Gene3D G3DSA:2.40.10.10 28 126 4.7E-28 T 29-03-2018 AM354_RS16980 542a8733ae1188571539e073bbfc8670 352 TIGRFAM TIGR02038 protease_degS: periplasmic serine peptidase DegS 3 348 6.4E-154 T 29-03-2018 IPR011783 Peptidase S1C, DegS GO:0004252|GO:0006508 AM354_RS16980 542a8733ae1188571539e073bbfc8670 352 SMART SM00228 253 335 2.4E-10 T 29-03-2018 IPR001478 PDZ domain GO:0005515 AM354_RS16980 542a8733ae1188571539e073bbfc8670 352 Gene3D G3DSA:2.30.42.10 251 352 9.7E-20 T 29-03-2018 AM354_RS16980 542a8733ae1188571539e073bbfc8670 352 SUPERFAMILY SSF50156 227 348 2.1E-19 T 29-03-2018 IPR001478 PDZ domain GO:0005515 AM354_RS16980 542a8733ae1188571539e073bbfc8670 352 Gene3D G3DSA:2.40.10.10 127 242 2.7E-33 T 29-03-2018 AM354_RS16980 542a8733ae1188571539e073bbfc8670 352 SUPERFAMILY SSF50494 45 250 1.14E-60 T 29-03-2018 IPR009003 Peptidase S1, PA clan AM354_RS16980 542a8733ae1188571539e073bbfc8670 352 PRINTS PR00834 HtrA/DegQ protease family signature 107 127 5.8E-45 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AM354_RS16980 542a8733ae1188571539e073bbfc8670 352 PRINTS PR00834 HtrA/DegQ protease family signature 147 171 5.8E-45 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AM354_RS16980 542a8733ae1188571539e073bbfc8670 352 PRINTS PR00834 HtrA/DegQ protease family signature 86 98 5.8E-45 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AM354_RS16980 542a8733ae1188571539e073bbfc8670 352 PRINTS PR00834 HtrA/DegQ protease family signature 204 221 5.8E-45 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AM354_RS16980 542a8733ae1188571539e073bbfc8670 352 PRINTS PR00834 HtrA/DegQ protease family signature 293 305 5.8E-45 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AM354_RS16980 542a8733ae1188571539e073bbfc8670 352 PRINTS PR00834 HtrA/DegQ protease family signature 182 199 5.8E-45 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AM354_RS06565 3b93b85e837df22ffd067cd432500e8f 243 SUPERFAMILY SSF52499 38 219 5.23E-37 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM354_RS06565 3b93b85e837df22ffd067cd432500e8f 243 Gene3D G3DSA:3.40.50.850 33 238 2.4E-27 T 29-03-2018 AM354_RS06565 3b93b85e837df22ffd067cd432500e8f 243 Pfam PF00857 Isochorismatase family 44 194 3.3E-21 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM354_RS19720 05f3b2d179848676e4af6c2f9c32697b 514 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 20 506 1.6E-170 T 29-03-2018 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 AM354_RS19720 05f3b2d179848676e4af6c2f9c32697b 514 Gene3D G3DSA:1.10.287.70 53 352 0.0087 T 29-03-2018 AM354_RS19720 05f3b2d179848676e4af6c2f9c32697b 514 ProSitePatterns PS01303 BCCT family of transporters signature. 321 330 - T 29-03-2018 IPR018093 BCCT transporter, conserved site GO:0005215|GO:0006810|GO:0016020 AM354_RS19720 05f3b2d179848676e4af6c2f9c32697b 514 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 58 505 2.0E-145 T 29-03-2018 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 AM354_RS12340 6bb31cb372220a50a4526d8b3a9b1305 610 SUPERFAMILY SSF54106 565 608 3.4E-9 T 29-03-2018 IPR018392 LysM domain AM354_RS12340 6bb31cb372220a50a4526d8b3a9b1305 610 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 226 445 1.6E-47 T 29-03-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 AM354_RS12340 6bb31cb372220a50a4526d8b3a9b1305 610 Gene3D G3DSA:3.40.630.40 221 451 2.1E-57 T 29-03-2018 AM354_RS12340 6bb31cb372220a50a4526d8b3a9b1305 610 SUPERFAMILY SSF53187 372 448 2.7E-52 T 29-03-2018 AM354_RS12340 6bb31cb372220a50a4526d8b3a9b1305 610 SUPERFAMILY SSF53187 224 320 2.7E-52 T 29-03-2018 AM354_RS12340 6bb31cb372220a50a4526d8b3a9b1305 610 Pfam PF11741 AMIN domain 35 122 3.0E-6 T 29-03-2018 IPR021731 AMIN domain AM354_RS12340 6bb31cb372220a50a4526d8b3a9b1305 610 SUPERFAMILY SSF54106 498 542 4.05E-9 T 29-03-2018 IPR018392 LysM domain AM354_RS12340 6bb31cb372220a50a4526d8b3a9b1305 610 SMART SM00257 565 608 4.4E-12 T 29-03-2018 IPR018392 LysM domain AM354_RS12340 6bb31cb372220a50a4526d8b3a9b1305 610 SMART SM00257 499 542 4.3E-13 T 29-03-2018 IPR018392 LysM domain AM354_RS12340 6bb31cb372220a50a4526d8b3a9b1305 610 SMART SM00646 286 445 9.2E-71 T 29-03-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 AM354_RS12340 6bb31cb372220a50a4526d8b3a9b1305 610 Pfam PF01476 LysM domain 566 608 9.3E-11 T 29-03-2018 IPR018392 LysM domain AM354_RS12340 6bb31cb372220a50a4526d8b3a9b1305 610 Pfam PF01476 LysM domain 500 542 4.3E-12 T 29-03-2018 IPR018392 LysM domain AM354_RS12340 6bb31cb372220a50a4526d8b3a9b1305 610 Gene3D G3DSA:3.10.350.10 558 610 2.5E-11 T 29-03-2018 AM354_RS12340 6bb31cb372220a50a4526d8b3a9b1305 610 Gene3D G3DSA:3.10.350.10 492 557 5.1E-14 T 29-03-2018 AM354_RS11740 f782833d6b878f3e2fcb5bc399b65074 128 SUPERFAMILY SSF55298 5 127 8.17E-42 T 29-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like AM354_RS11740 f782833d6b878f3e2fcb5bc399b65074 128 Pfam PF01042 Endoribonuclease L-PSP 8 126 2.4E-43 T 29-03-2018 IPR006175 YjgF/YER057c/UK114 family AM354_RS11740 f782833d6b878f3e2fcb5bc399b65074 128 Gene3D G3DSA:3.30.1330.40 1 128 2.7E-44 T 29-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like AM354_RS11740 f782833d6b878f3e2fcb5bc399b65074 128 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 3 126 5.3E-52 T 29-03-2018 IPR006056 RidA family AM354_RS11740 f782833d6b878f3e2fcb5bc399b65074 128 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 103 121 - T 29-03-2018 IPR019897 RidA, conserved site AM354_RS24385 2e125f551a7270cbc83067ba93521d72 324 Gene3D G3DSA:1.10.10.60 232 268 7.8E-13 T 29-03-2018 AM354_RS24385 2e125f551a7270cbc83067ba93521d72 324 SUPERFAMILY SSF46689 269 319 2.42E-9 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS24385 2e125f551a7270cbc83067ba93521d72 324 Gene3D G3DSA:1.10.10.60 269 324 3.9E-9 T 29-03-2018 AM354_RS24385 2e125f551a7270cbc83067ba93521d72 324 SUPERFAMILY SSF46689 217 265 4.48E-10 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS24385 2e125f551a7270cbc83067ba93521d72 324 SMART SM00342 232 315 2.7E-23 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS24385 2e125f551a7270cbc83067ba93521d72 324 SUPERFAMILY SSF52317 1 197 9.47E-43 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS24385 2e125f551a7270cbc83067ba93521d72 324 Pfam PF12833 Helix-turn-helix domain 238 317 5.0E-20 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS24385 2e125f551a7270cbc83067ba93521d72 324 Pfam PF01965 DJ-1/PfpI family 38 176 2.7E-19 T 29-03-2018 IPR002818 DJ-1/PfpI AM354_RS24385 2e125f551a7270cbc83067ba93521d72 324 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 269 311 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM354_RS24385 2e125f551a7270cbc83067ba93521d72 324 Gene3D G3DSA:3.40.50.880 1 231 2.0E-60 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS17545 0c715481b6193d7f44612b126d729456 108 Pfam PF03860 Domain of Unknown Function (DUF326) 64 84 7.0E-6 T 29-03-2018 IPR005560 Protein of unknown function DUF326 AM354_RS02175 913b3cd1a2c6d5cb0ffbf4eebe3f56d2 489 Gene3D G3DSA:1.20.1650.10 5 80 1.3E-14 T 29-03-2018 AM354_RS02175 913b3cd1a2c6d5cb0ffbf4eebe3f56d2 489 SUPERFAMILY SSF53383 15 487 1.1E-117 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS02175 913b3cd1a2c6d5cb0ffbf4eebe3f56d2 489 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 66 417 1.7E-63 T 29-03-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 AM354_RS02175 913b3cd1a2c6d5cb0ffbf4eebe3f56d2 489 Gene3D G3DSA:3.40.640.10 92 370 3.6E-56 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS02175 913b3cd1a2c6d5cb0ffbf4eebe3f56d2 489 Gene3D G3DSA:3.90.1150.10 371 488 2.6E-27 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS06755 bb41e045824554b46cb9457ffcc0492b 304 SUPERFAMILY SSF51735 9 168 3.38E-34 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS06755 bb41e045824554b46cb9457ffcc0492b 304 Gene3D G3DSA:1.10.1040.10 171 296 3.3E-33 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM354_RS06755 bb41e045824554b46cb9457ffcc0492b 304 PIRSF PIRSF000103 1 297 7.2E-63 T 29-03-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 AM354_RS06755 bb41e045824554b46cb9457ffcc0492b 304 Gene3D G3DSA:3.40.50.720 7 170 6.0E-28 T 29-03-2018 AM354_RS06755 bb41e045824554b46cb9457ffcc0492b 304 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 11 24 - T 29-03-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 AM354_RS06755 bb41e045824554b46cb9457ffcc0492b 304 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 172 291 1.1E-34 T 29-03-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 AM354_RS06755 bb41e045824554b46cb9457ffcc0492b 304 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 9 166 3.1E-39 T 29-03-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 AM354_RS06755 bb41e045824554b46cb9457ffcc0492b 304 SUPERFAMILY SSF48179 171 293 4.08E-36 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM354_RS10680 d37eb59491d8b5bae16642666f0f77e7 553 SUPERFAMILY SSF53850 117 549 1.09E-63 T 29-03-2018 AM354_RS10680 d37eb59491d8b5bae16642666f0f77e7 553 Hamap MF_01449 HTH-type transcriptional regulator SgrR [sgrR]. 1 553 65.672 T 29-03-2018 IPR023767 Transcriptional regulator SgrR AM354_RS10680 d37eb59491d8b5bae16642666f0f77e7 553 Pfam PF12793 Sugar transport-related sRNA regulator N-term 5 118 1.7E-41 T 29-03-2018 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain AM354_RS10680 d37eb59491d8b5bae16642666f0f77e7 553 SUPERFAMILY SSF46785 4 56 7.96E-6 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS10680 d37eb59491d8b5bae16642666f0f77e7 553 Gene3D G3DSA:3.90.76.10 129 261 6.6E-18 T 29-03-2018 AM354_RS10680 d37eb59491d8b5bae16642666f0f77e7 553 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 177 306 9.3E-18 T 29-03-2018 IPR000914 Solute-binding protein family 5 domain AM354_RS10680 d37eb59491d8b5bae16642666f0f77e7 553 Gene3D G3DSA:1.10.10.10 3 89 6.1E-6 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS10680 d37eb59491d8b5bae16642666f0f77e7 553 Gene3D G3DSA:3.40.190.10 262 367 4.8E-8 T 29-03-2018 AM354_RS16595 d0d7465e34951a6c21ee4ae5b36f37cd 295 SUPERFAMILY SSF46785 2 86 3.89E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS16595 d0d7465e34951a6c21ee4ae5b36f37cd 295 SUPERFAMILY SSF53850 90 293 4.05E-43 T 29-03-2018 AM354_RS16595 d0d7465e34951a6c21ee4ae5b36f37cd 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 5.4E-22 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS16595 d0d7465e34951a6c21ee4ae5b36f37cd 295 Pfam PF03466 LysR substrate binding domain 89 290 1.4E-44 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS16595 d0d7465e34951a6c21ee4ae5b36f37cd 295 Gene3D G3DSA:3.40.190.10 179 265 2.8E-22 T 29-03-2018 AM354_RS16595 d0d7465e34951a6c21ee4ae5b36f37cd 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.3E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS16595 d0d7465e34951a6c21ee4ae5b36f37cd 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.3E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS16595 d0d7465e34951a6c21ee4ae5b36f37cd 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.3E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS16595 d0d7465e34951a6c21ee4ae5b36f37cd 295 Gene3D G3DSA:1.10.10.10 1 86 7.0E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS16595 d0d7465e34951a6c21ee4ae5b36f37cd 295 Gene3D G3DSA:3.40.190.10 90 178 1.1E-17 T 29-03-2018 AM354_RS20205 f02afd9829a19586aa9dac91f621bf96 280 Pfam PF01148 Cytidylyltransferase family 4 277 6.2E-73 T 29-03-2018 AM354_RS20205 f02afd9829a19586aa9dac91f621bf96 280 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 237 263 - T 29-03-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 AM354_RS00060 28bd1027c3c5b8f75059314badb199d0 204 Pfam PF07499 RuvA, C-terminal domain 160 202 8.7E-16 T 29-03-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 AM354_RS00060 28bd1027c3c5b8f75059314badb199d0 204 Pfam PF01330 RuvA N terminal domain 1 62 1.1E-20 T 29-03-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 AM354_RS00060 28bd1027c3c5b8f75059314badb199d0 204 Gene3D G3DSA:1.10.150.20 81 142 3.8E-16 T 29-03-2018 AM354_RS00060 28bd1027c3c5b8f75059314badb199d0 204 SUPERFAMILY SSF47781 66 136 1.0E-22 T 29-03-2018 IPR010994 RuvA domain 2-like AM354_RS00060 28bd1027c3c5b8f75059314badb199d0 204 Pfam PF14520 Helix-hairpin-helix domain 72 130 4.1E-17 T 29-03-2018 AM354_RS00060 28bd1027c3c5b8f75059314badb199d0 204 Gene3D G3DSA:2.40.50.140 1 56 1.9E-24 T 29-03-2018 AM354_RS00060 28bd1027c3c5b8f75059314badb199d0 204 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 204 7.4E-70 T 29-03-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 AM354_RS00060 28bd1027c3c5b8f75059314badb199d0 204 SUPERFAMILY SSF50249 1 63 6.85E-19 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS00060 28bd1027c3c5b8f75059314badb199d0 204 SMART SM00278 73 92 0.054 T 29-03-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AM354_RS00060 28bd1027c3c5b8f75059314badb199d0 204 SMART SM00278 108 127 0.15 T 29-03-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AM354_RS00060 28bd1027c3c5b8f75059314badb199d0 204 Gene3D G3DSA:1.10.8.10 158 203 2.5E-15 T 29-03-2018 AM354_RS00060 28bd1027c3c5b8f75059314badb199d0 204 SUPERFAMILY SSF46929 159 202 2.09E-10 T 29-03-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 AM354_RS00060 28bd1027c3c5b8f75059314badb199d0 204 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 204 33.223 T 29-03-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 AM354_RS00060 28bd1027c3c5b8f75059314badb199d0 204 Gene3D G3DSA:1.10.150.280 57 80 0.014 T 29-03-2018 AM354_RS15645 b7f38ef68677618eb08785566c5538bf 539 Pfam PF01293 Phosphoenolpyruvate carboxykinase 21 490 5.2E-210 T 29-03-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 AM354_RS15645 b7f38ef68677618eb08785566c5538bf 539 SUPERFAMILY SSF68923 8 226 7.5E-91 T 29-03-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 AM354_RS15645 b7f38ef68677618eb08785566c5538bf 539 TIGRFAM TIGR00224 pckA: phosphoenolpyruvate carboxykinase (ATP) 7 539 2.2E-282 T 29-03-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 AM354_RS15645 b7f38ef68677618eb08785566c5538bf 539 PIRSF PIRSF006294 3 539 3.0E-227 T 29-03-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 AM354_RS15645 b7f38ef68677618eb08785566c5538bf 539 Hamap MF_00453 Phosphoenolpyruvate carboxykinase (ATP) [pckA]. 15 537 54.812 T 29-03-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 AM354_RS15645 b7f38ef68677618eb08785566c5538bf 539 SUPERFAMILY SSF53795 228 539 3.11E-127 T 29-03-2018 AM354_RS15645 b7f38ef68677618eb08785566c5538bf 539 Gene3D G3DSA:3.40.449.10 22 226 4.2E-78 T 29-03-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 AM354_RS15645 b7f38ef68677618eb08785566c5538bf 539 ProSitePatterns PS00532 Phosphoenolpyruvate carboxykinase (ATP) signature. 264 279 - T 29-03-2018 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 AM354_RS15645 b7f38ef68677618eb08785566c5538bf 539 Gene3D G3DSA:3.90.228.20 227 310 6.7E-30 T 29-03-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 AM354_RS15645 b7f38ef68677618eb08785566c5538bf 539 Gene3D G3DSA:3.90.228.20 311 537 6.3E-91 T 29-03-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 AM354_RS04475 f13d34cbfefb54a9c77f733fa19ceba6 326 Gene3D G3DSA:3.40.50.2300 64 161 8.4E-12 T 29-03-2018 AM354_RS04475 f13d34cbfefb54a9c77f733fa19ceba6 326 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 29-03-2018 AM354_RS04475 f13d34cbfefb54a9c77f733fa19ceba6 326 SUPERFAMILY SSF53822 73 317 5.3E-49 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS04475 f13d34cbfefb54a9c77f733fa19ceba6 326 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 2.7E-5 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS04475 f13d34cbfefb54a9c77f733fa19ceba6 326 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 2.7E-5 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS04475 f13d34cbfefb54a9c77f733fa19ceba6 326 Gene3D G3DSA:1.10.260.40 16 61 3.8E-16 T 29-03-2018 AM354_RS04475 f13d34cbfefb54a9c77f733fa19ceba6 326 Gene3D G3DSA:3.40.50.2300 162 326 5.4E-41 T 29-03-2018 AM354_RS04475 f13d34cbfefb54a9c77f733fa19ceba6 326 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 4.5E-16 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS04475 f13d34cbfefb54a9c77f733fa19ceba6 326 SUPERFAMILY SSF47413 1 50 2.63E-12 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS04475 f13d34cbfefb54a9c77f733fa19ceba6 326 Pfam PF13377 Periplasmic binding protein-like domain 164 324 9.9E-38 T 29-03-2018 AM354_RS04475 f13d34cbfefb54a9c77f733fa19ceba6 326 Gene3D G3DSA:1.10.10.60 2 15 0.34 T 29-03-2018 AM354_RS04475 f13d34cbfefb54a9c77f733fa19ceba6 326 SMART SM00354 1 71 2.3E-15 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS03960 536be4d7be1d9fdb16e0f2cf247575f7 122 Gene3D G3DSA:2.40.10.180 1 114 7.7E-28 T 29-03-2018 AM354_RS03960 536be4d7be1d9fdb16e0f2cf247575f7 122 SUPERFAMILY SSF69279 1 112 3.23E-22 T 29-03-2018 AM354_RS03960 536be4d7be1d9fdb16e0f2cf247575f7 122 Pfam PF05354 Phage Head-Tail Attachment 1 111 2.8E-22 T 29-03-2018 IPR008018 Bacteriophage tail attachment protein FII GO:0019028|GO:0019068 AM354_RS03960 536be4d7be1d9fdb16e0f2cf247575f7 122 ProDom PD031229 PROPHAGE HEAD-TAIL JOINING CAPSID TAIL ATTACHMENT MINOR GIFSY-1 FII CP-933X 1 110 2.0E-15 T 29-03-2018 IPR008018 Bacteriophage tail attachment protein FII GO:0019028|GO:0019068 AM354_RS11395 aeb8b89bb83f741f17de8d3083c17f76 248 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 166 244 2.0E-5 T 29-03-2018 IPR006260 TonB, C-terminal GO:0006810 AM354_RS11395 aeb8b89bb83f741f17de8d3083c17f76 248 SUPERFAMILY SSF74653 151 246 8.63E-8 T 29-03-2018 AM354_RS11395 aeb8b89bb83f741f17de8d3083c17f76 248 Gene3D G3DSA:3.30.1150.10 133 245 1.3E-11 T 29-03-2018 AM354_RS11395 aeb8b89bb83f741f17de8d3083c17f76 248 Pfam PF16031 TonB N-terminal region 34 148 1.3E-7 T 29-03-2018 AM354_RS11395 aeb8b89bb83f741f17de8d3083c17f76 248 PRINTS PR01217 Proline rich extensin signature 71 87 1.4E-11 T 29-03-2018 AM354_RS11395 aeb8b89bb83f741f17de8d3083c17f76 248 PRINTS PR01217 Proline rich extensin signature 50 71 1.4E-11 T 29-03-2018 AM354_RS11395 aeb8b89bb83f741f17de8d3083c17f76 248 PRINTS PR01217 Proline rich extensin signature 110 135 1.4E-11 T 29-03-2018 AM354_RS11395 aeb8b89bb83f741f17de8d3083c17f76 248 PRINTS PR01217 Proline rich extensin signature 90 107 1.4E-11 T 29-03-2018 AM354_RS09210 592a3c1935d24461baf901bbd8576d33 369 SUPERFAMILY SSF53597 145 364 1.31E-57 T 29-03-2018 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 AM354_RS09210 592a3c1935d24461baf901bbd8576d33 369 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 147 365 1.9E-72 T 29-03-2018 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 AM354_RS09210 592a3c1935d24461baf901bbd8576d33 369 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 51 89 - T 29-03-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 AM354_RS09210 592a3c1935d24461baf901bbd8576d33 369 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 1 100 2.4E-20 T 29-03-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain AM354_RS09210 592a3c1935d24461baf901bbd8576d33 369 SUPERFAMILY SSF53927 4 146 4.61E-49 T 29-03-2018 IPR016193 Cytidine deaminase-like GO:0003824 AM354_RS09210 592a3c1935d24461baf901bbd8576d33 369 PIRSF PIRSF006769 1 369 6.7E-130 T 29-03-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525 AM354_RS09210 592a3c1935d24461baf901bbd8576d33 369 Gene3D G3DSA:3.40.140.10 1 124 1.2E-33 T 29-03-2018 AM354_RS09210 592a3c1935d24461baf901bbd8576d33 369 Pfam PF01872 RibD C-terminal domain 148 361 5.2E-56 T 29-03-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 AM354_RS09210 592a3c1935d24461baf901bbd8576d33 369 Gene3D G3DSA:3.40.430.10 125 369 1.8E-63 T 29-03-2018 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 AM354_RS09210 592a3c1935d24461baf901bbd8576d33 369 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 8 362 2.9E-142 T 29-03-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525 AM354_RS19920 7acafb30b674a6a5e99ea4c4f8f802c2 420 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 51 69 - T 29-03-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site AM354_RS19920 7acafb30b674a6a5e99ea4c4f8f802c2 420 SUPERFAMILY SSF51419 25 277 4.71E-57 T 29-03-2018 IPR029066 PLP-binding barrel AM354_RS19920 7acafb30b674a6a5e99ea4c4f8f802c2 420 Gene3D G3DSA:3.20.20.10 35 263 1.9E-47 T 29-03-2018 IPR029066 PLP-binding barrel AM354_RS19920 7acafb30b674a6a5e99ea4c4f8f802c2 420 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 206 376 5.5E-26 T 29-03-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 AM354_RS19920 7acafb30b674a6a5e99ea4c4f8f802c2 420 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 6 418 8.4E-131 T 29-03-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AM354_RS19920 7acafb30b674a6a5e99ea4c4f8f802c2 420 SUPERFAMILY SSF50621 250 419 1.19E-58 T 29-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AM354_RS19920 7acafb30b674a6a5e99ea4c4f8f802c2 420 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 216 229 - T 29-03-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site AM354_RS19920 7acafb30b674a6a5e99ea4c4f8f802c2 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 376 389 1.7E-19 T 29-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AM354_RS19920 7acafb30b674a6a5e99ea4c4f8f802c2 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 51 69 1.7E-19 T 29-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AM354_RS19920 7acafb30b674a6a5e99ea4c4f8f802c2 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 265 284 1.7E-19 T 29-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AM354_RS19920 7acafb30b674a6a5e99ea4c4f8f802c2 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 71 83 1.7E-19 T 29-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AM354_RS19920 7acafb30b674a6a5e99ea4c4f8f802c2 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 182 195 1.7E-19 T 29-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AM354_RS19920 7acafb30b674a6a5e99ea4c4f8f802c2 420 Gene3D G3DSA:2.40.37.10 264 420 5.7E-47 T 29-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AM354_RS19920 7acafb30b674a6a5e99ea4c4f8f802c2 420 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 42 275 5.0E-59 T 29-03-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 AM354_RS19920 7acafb30b674a6a5e99ea4c4f8f802c2 420 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 14 419 38.603 T 29-03-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AM354_RS19920 7acafb30b674a6a5e99ea4c4f8f802c2 420 PRINTS PR01181 Diaminopimelate decarboxylase signature 69 86 1.3E-26 T 29-03-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AM354_RS19920 7acafb30b674a6a5e99ea4c4f8f802c2 420 PRINTS PR01181 Diaminopimelate decarboxylase signature 157 166 1.3E-26 T 29-03-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AM354_RS19920 7acafb30b674a6a5e99ea4c4f8f802c2 420 PRINTS PR01181 Diaminopimelate decarboxylase signature 386 408 1.3E-26 T 29-03-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AM354_RS19920 7acafb30b674a6a5e99ea4c4f8f802c2 420 PRINTS PR01181 Diaminopimelate decarboxylase signature 293 311 1.3E-26 T 29-03-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AM354_RS20630 e8d6fab572ae180f23207ea8fd46b10e 430 SUPERFAMILY SSF102114 16 347 2.16E-40 T 29-03-2018 AM354_RS20630 e8d6fab572ae180f23207ea8fd46b10e 430 TIGRFAM TIGR03942 sulfatase_rSAM: anaerobic sulfatase maturase 9 385 1.8E-150 T 29-03-2018 IPR023867 Anaerobic sulphatase maturase, radical SAM GO:0016491 AM354_RS20630 e8d6fab572ae180f23207ea8fd46b10e 430 SUPERFAMILY SSF103642 412 429 8.34E-5 T 29-03-2018 AM354_RS20630 e8d6fab572ae180f23207ea8fd46b10e 430 Pfam PF04055 Radical SAM superfamily 15 185 4.2E-10 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AM354_RS20630 e8d6fab572ae180f23207ea8fd46b10e 430 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 277 366 1.4E-20 T 29-03-2018 IPR023885 4Fe4S-binding SPASM domain AM354_RS20630 e8d6fab572ae180f23207ea8fd46b10e 430 Gene3D G3DSA:3.20.20.70 12 338 1.8E-37 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS20630 e8d6fab572ae180f23207ea8fd46b10e 430 Pfam PF02810 SEC-C motif 414 429 1.4E-7 T 29-03-2018 IPR004027 SEC-C motif AM354_RS20630 e8d6fab572ae180f23207ea8fd46b10e 430 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 54 405 2.0E-17 T 29-03-2018 AM354_RS20630 e8d6fab572ae180f23207ea8fd46b10e 430 Pfam PF13186 Iron-sulfur cluster-binding domain 278 338 1.4E-8 T 29-03-2018 IPR023885 4Fe4S-binding SPASM domain AM354_RS18250 cb87752a27850d181059aa7ce4e3272c 669 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 188 206 5.7E-25 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AM354_RS18250 cb87752a27850d181059aa7ce4e3272c 669 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 315 324 5.7E-25 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AM354_RS18250 cb87752a27850d181059aa7ce4e3272c 669 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 396 412 5.7E-25 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AM354_RS18250 cb87752a27850d181059aa7ce4e3272c 669 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 97 110 5.7E-25 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AM354_RS18250 cb87752a27850d181059aa7ce4e3272c 669 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 519 533 5.7E-25 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AM354_RS18250 cb87752a27850d181059aa7ce4e3272c 669 SUPERFAMILY SSF57783 616 654 6.46E-7 T 29-03-2018 AM354_RS18250 cb87752a27850d181059aa7ce4e3272c 669 Gene3D G3DSA:1.10.460.10 152 387 1.6E-41 T 29-03-2018 AM354_RS18250 cb87752a27850d181059aa7ce4e3272c 669 Gene3D G3DSA:3.40.50.140 1 150 1.6E-38 T 29-03-2018 AM354_RS18250 cb87752a27850d181059aa7ce4e3272c 669 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 309 324 - T 29-03-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 AM354_RS18250 cb87752a27850d181059aa7ce4e3272c 669 SUPERFAMILY SSF56712 1 603 4.84E-181 T 29-03-2018 IPR023405 DNA topoisomerase, type IA, core domain AM354_RS18250 cb87752a27850d181059aa7ce4e3272c 669 SMART SM00493 1 123 8.3E-20 T 29-03-2018 IPR006171 TOPRIM domain AM354_RS18250 cb87752a27850d181059aa7ce4e3272c 669 SMART SM00436 123 218 2.4E-30 T 29-03-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 AM354_RS18250 cb87752a27850d181059aa7ce4e3272c 669 Gene3D G3DSA:1.10.460.10 388 607 1.0E-27 T 29-03-2018 AM354_RS18250 cb87752a27850d181059aa7ce4e3272c 669 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 619 649 1.2E-7 T 29-03-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 AM354_RS18250 cb87752a27850d181059aa7ce4e3272c 669 Gene3D G3DSA:3.30.65.10 608 663 2.5E-12 T 29-03-2018 AM354_RS18250 cb87752a27850d181059aa7ce4e3272c 669 SMART SM00437 272 556 6.2E-68 T 29-03-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 AM354_RS18250 cb87752a27850d181059aa7ce4e3272c 669 Pfam PF01131 DNA topoisomerase 152 590 5.5E-119 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AM354_RS18250 cb87752a27850d181059aa7ce4e3272c 669 TIGRFAM TIGR01056 topB: DNA topoisomerase III 1 664 6.8E-253 T 29-03-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 AM354_RS18250 cb87752a27850d181059aa7ce4e3272c 669 Pfam PF01751 Toprim domain 2 130 7.2E-20 T 29-03-2018 IPR006171 TOPRIM domain AM354_RS24440 b24d290340cd2ee8f7b0dcf75746c639 384 TIGRFAM TIGR02425 decarb_PcaC: 4-carboxymuconolactone decarboxylase 256 376 3.0E-55 T 29-03-2018 IPR012788 4-carboxymuconolactone decarboxylase KEGG: 00362+4.1.1.44 AM354_RS24440 b24d290340cd2ee8f7b0dcf75746c639 384 Gene3D G3DSA:1.20.1290.10 260 384 4.4E-37 T 29-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AM354_RS24440 b24d290340cd2ee8f7b0dcf75746c639 384 Gene3D G3DSA:3.40.50.1820 2 253 9.9E-47 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS24440 b24d290340cd2ee8f7b0dcf75746c639 384 Pfam PF00561 alpha/beta hydrolase fold 14 171 1.9E-11 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS24440 b24d290340cd2ee8f7b0dcf75746c639 384 SUPERFAMILY SSF53474 3 250 1.69E-57 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS24440 b24d290340cd2ee8f7b0dcf75746c639 384 TIGRFAM TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase 2 249 5.1E-85 T 29-03-2018 IPR026968 3-oxoadipate enol-lactonase 1/2 GO:0042952|GO:0047570 KEGG: 00362+3.1.1.24|MetaCyc: PWY-6185 AM354_RS24440 b24d290340cd2ee8f7b0dcf75746c639 384 SUPERFAMILY SSF69118 255 381 1.44E-38 T 29-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AM354_RS24440 b24d290340cd2ee8f7b0dcf75746c639 384 Pfam PF02627 Carboxymuconolactone decarboxylase family 288 370 1.5E-25 T 29-03-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AM354_RS24440 b24d290340cd2ee8f7b0dcf75746c639 384 PRINTS PR00111 Alpha/beta hydrolase fold signature 196 210 1.8E-8 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS24440 b24d290340cd2ee8f7b0dcf75746c639 384 PRINTS PR00111 Alpha/beta hydrolase fold signature 39 54 1.8E-8 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS24440 b24d290340cd2ee8f7b0dcf75746c639 384 PRINTS PR00111 Alpha/beta hydrolase fold signature 97 110 1.8E-8 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS24440 b24d290340cd2ee8f7b0dcf75746c639 384 PRINTS PR00111 Alpha/beta hydrolase fold signature 83 96 1.8E-8 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS13020 f8bf112c6aff68f1285600121cc38b65 256 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 234 254 1.6E-11 T 29-03-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AM354_RS13020 f8bf112c6aff68f1285600121cc38b65 256 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS13020 f8bf112c6aff68f1285600121cc38b65 256 SMART SM00382 31 231 1.2E-6 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS13020 f8bf112c6aff68f1285600121cc38b65 256 SUPERFAMILY SSF52540 5 254 5.0E-63 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS13020 f8bf112c6aff68f1285600121cc38b65 256 Gene3D G3DSA:3.40.50.300 2 256 2.1E-58 T 29-03-2018 AM354_RS13020 f8bf112c6aff68f1285600121cc38b65 256 Pfam PF00005 ABC transporter 22 182 4.9E-33 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS11665 7fe6cd266d2887a5831ec4489ee5f439 238 SUPERFAMILY SSF75516 11 158 2.09E-32 T 29-03-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain AM354_RS11665 7fe6cd266d2887a5831ec4489ee5f439 238 Pfam PF03472 Autoinducer binding domain 27 152 2.0E-24 T 29-03-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain AM354_RS11665 7fe6cd266d2887a5831ec4489ee5f439 238 Gene3D G3DSA:1.10.10.10 164 237 5.5E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS11665 7fe6cd266d2887a5831ec4489ee5f439 238 SMART SM00421 171 228 2.8E-13 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS11665 7fe6cd266d2887a5831ec4489ee5f439 238 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 188 204 2.7E-8 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS11665 7fe6cd266d2887a5831ec4489ee5f439 238 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 174 188 2.7E-8 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS11665 7fe6cd266d2887a5831ec4489ee5f439 238 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 204 216 2.7E-8 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS11665 7fe6cd266d2887a5831ec4489ee5f439 238 Pfam PF00196 Bacterial regulatory proteins, luxR family 173 227 6.2E-14 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS11665 7fe6cd266d2887a5831ec4489ee5f439 238 Gene3D G3DSA:3.30.450.80 8 163 4.0E-30 T 29-03-2018 AM354_RS11665 7fe6cd266d2887a5831ec4489ee5f439 238 SUPERFAMILY SSF46894 166 234 2.72E-14 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS09375 dcf7c8afc79755962fe24a55ea803b9e 263 Gene3D G3DSA:3.30.1150.10 118 263 1.2E-22 T 29-03-2018 AM354_RS09375 dcf7c8afc79755962fe24a55ea803b9e 263 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 180 258 1.1E-14 T 29-03-2018 IPR006260 TonB, C-terminal GO:0006810 AM354_RS09375 dcf7c8afc79755962fe24a55ea803b9e 263 SUPERFAMILY SSF74653 142 259 5.59E-21 T 29-03-2018 AM354_RS09375 dcf7c8afc79755962fe24a55ea803b9e 263 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 180 258 1.4E-13 T 29-03-2018 IPR006260 TonB, C-terminal GO:0006810 AM354_RS19450 a9474e6734bae65c9aca3512bc2aef07 392 Pfam PF01494 FAD binding domain 2 343 5.6E-25 T 29-03-2018 IPR002938 FAD-binding domain GO:0071949 AM354_RS19450 a9474e6734bae65c9aca3512bc2aef07 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 293 309 1.8E-14 T 29-03-2018 AM354_RS19450 a9474e6734bae65c9aca3512bc2aef07 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 278 293 1.8E-14 T 29-03-2018 AM354_RS19450 a9474e6734bae65c9aca3512bc2aef07 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 154 169 1.8E-14 T 29-03-2018 AM354_RS19450 a9474e6734bae65c9aca3512bc2aef07 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 1.8E-14 T 29-03-2018 AM354_RS19450 a9474e6734bae65c9aca3512bc2aef07 392 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 3 388 2.5E-131 T 29-03-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 AM354_RS19450 a9474e6734bae65c9aca3512bc2aef07 392 TIGRFAM TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase 3 388 7.2E-144 T 29-03-2018 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase GO:0006744|GO:0008681 AM354_RS19450 a9474e6734bae65c9aca3512bc2aef07 392 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 292 305 - T 29-03-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 AM354_RS19450 a9474e6734bae65c9aca3512bc2aef07 392 SUPERFAMILY SSF51905 265 382 1.18E-53 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS19450 a9474e6734bae65c9aca3512bc2aef07 392 SUPERFAMILY SSF51905 2 175 1.18E-53 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS19450 a9474e6734bae65c9aca3512bc2aef07 392 Gene3D G3DSA:3.50.50.60 2 352 4.3E-38 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS08455 bfa52e3a3948b4321aaba0da00e82060 275 SMART SM00382 51 248 6.8E-21 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS08455 bfa52e3a3948b4321aaba0da00e82060 275 Gene3D G3DSA:3.40.50.300 23 274 2.7E-76 T 29-03-2018 AM354_RS08455 bfa52e3a3948b4321aaba0da00e82060 275 ProSitePatterns PS00211 ABC transporters family signature. 172 186 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS08455 bfa52e3a3948b4321aaba0da00e82060 275 SUPERFAMILY SSF52540 26 270 1.33E-76 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS08455 bfa52e3a3948b4321aaba0da00e82060 275 Pfam PF00005 ABC transporter 42 200 4.8E-36 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS08455 bfa52e3a3948b4321aaba0da00e82060 275 PIRSF PIRSF039085 23 275 4.1E-105 T 29-03-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AM354_RS01130 8aadef268201719b9438e1128c1db0da 175 ProSitePatterns PS00934 Glyoxalase I signature 1. 27 48 - T 29-03-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 AM354_RS01130 8aadef268201719b9438e1128c1db0da 175 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 25 167 4.1E-20 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AM354_RS01130 8aadef268201719b9438e1128c1db0da 175 SUPERFAMILY SSF54593 23 172 1.75E-37 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS01130 8aadef268201719b9438e1128c1db0da 175 Gene3D G3DSA:3.10.180.10 8 175 4.5E-34 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS01130 8aadef268201719b9438e1128c1db0da 175 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 14 172 7.5E-40 T 29-03-2018 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 AM354_RS07040 a5eca8d317802fd03c9542c4a7e04f24 122 SUPERFAMILY SSF74653 40 122 2.49E-15 T 29-03-2018 AM354_RS07040 a5eca8d317802fd03c9542c4a7e04f24 122 Pfam PF06519 TolA C-terminal 35 115 1.3E-13 T 29-03-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0006810|GO:0016020 AM354_RS07040 a5eca8d317802fd03c9542c4a7e04f24 122 Gene3D G3DSA:3.30.1150.10 26 122 2.5E-16 T 29-03-2018 AM354_RS09200 fd59d2a17d0884a696c844ad42d0ea47 138 Hamap MF_00073 N utilization substance protein B homolog [nusB]. 4 135 24.242 T 29-03-2018 IPR011605 NusB antitermination factor GO:0006353 AM354_RS09200 fd59d2a17d0884a696c844ad42d0ea47 138 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 6 132 3.2E-46 T 29-03-2018 IPR011605 NusB antitermination factor GO:0006353 AM354_RS09200 fd59d2a17d0884a696c844ad42d0ea47 138 Gene3D G3DSA:1.10.940.10 1 138 2.5E-45 T 29-03-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 AM354_RS09200 fd59d2a17d0884a696c844ad42d0ea47 138 Pfam PF01029 NusB family 7 131 2.9E-37 T 29-03-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 AM354_RS09200 fd59d2a17d0884a696c844ad42d0ea47 138 SUPERFAMILY SSF48013 3 136 4.19E-44 T 29-03-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 AM354_RS20685 68a5feac75aec5d7f55d393b9d2a981c 378 Pfam PF13533 Biotin-lipoyl like 64 111 2.8E-6 T 29-03-2018 AM354_RS20685 68a5feac75aec5d7f55d393b9d2a981c 378 Gene3D G3DSA:1.20.5.50 160 217 6.1E-4 T 29-03-2018 AM354_RS20685 68a5feac75aec5d7f55d393b9d2a981c 378 SUPERFAMILY SSF111369 64 144 9.29E-10 T 29-03-2018 AM354_RS20685 68a5feac75aec5d7f55d393b9d2a981c 378 SUPERFAMILY SSF111369 189 267 4.32E-5 T 29-03-2018 AM354_RS20685 68a5feac75aec5d7f55d393b9d2a981c 378 Gene3D G3DSA:2.40.50.100 218 350 0.0029 T 29-03-2018 AM354_RS20685 68a5feac75aec5d7f55d393b9d2a981c 378 Gene3D G3DSA:2.40.50.100 124 155 0.11 T 29-03-2018 AM354_RS20685 68a5feac75aec5d7f55d393b9d2a981c 378 Gene3D G3DSA:2.40.50.100 63 123 1.9E-9 T 29-03-2018 AM354_RS14310 ead64d124190a4478c28cff3363a736c 152 SUPERFAMILY SSF51283 1 151 2.49E-56 T 29-03-2018 IPR029054 dUTPase-like AM354_RS14310 ead64d124190a4478c28cff3363a736c 152 Pfam PF00692 dUTPase 18 150 5.6E-44 T 29-03-2018 IPR029054 dUTPase-like AM354_RS14310 ead64d124190a4478c28cff3363a736c 152 Gene3D G3DSA:2.70.40.10 2 116 2.0E-40 T 29-03-2018 AM354_RS14310 ead64d124190a4478c28cff3363a736c 152 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 7 151 34.493 T 29-03-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|Reactome: R-HSA-499943 AM354_RS14310 ead64d124190a4478c28cff3363a736c 152 Gene3D G3DSA:2.70.40.10 117 151 4.5E-16 T 29-03-2018 AM354_RS14310 ead64d124190a4478c28cff3363a736c 152 TIGRFAM TIGR00576 dut: dUTP diphosphatase 11 151 1.4E-49 T 29-03-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|Reactome: R-HSA-499943 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 SUPERFAMILY SSF52777 4639 4834 8.56E-31 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 SUPERFAMILY SSF53474 5662 5930 4.75E-46 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 ProSitePatterns PS00012 Phosphopantetheine attachment site. 5619 5634 - T 29-03-2018 IPR006162 Phosphopantetheine attachment site AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Gene3D G3DSA:2.30.38.10 2199 2288 1.4E-26 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Gene3D G3DSA:2.30.38.10 3273 3362 5.1E-26 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Gene3D G3DSA:1.10.1200.10 5601 5671 4.2E-22 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Gene3D G3DSA:1.10.1200.10 2412 2482 2.5E-18 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 SUPERFAMILY SSF56801 2932 3493 1.7E-175 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Gene3D G3DSA:2.30.38.10 5396 5473 7.6E-24 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Gene3D G3DSA:2.30.38.10 4326 4406 4.9E-26 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Gene3D G3DSA:2.30.38.10 1152 1234 2.2E-22 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Gene3D G3DSA:3.30.559.10 3548 3764 2.1E-49 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Gene3D G3DSA:3.30.559.10 1422 1635 3.1E-48 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 SUPERFAMILY SSF47336 2399 2469 3.66E-18 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 SUPERFAMILY SSF52777 3746 4011 8.67E-59 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 ProSitePatterns PS00455 Putative AMP-binding domain signature. 982 993 - T 29-03-2018 IPR020845 AMP-binding, conserved site AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 SUPERFAMILY SSF47336 4519 4591 1.57E-18 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 2994 3394 3.0E-144 T 29-03-2018 IPR010071 Amino acid adenylation domain AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 4046 4440 5.2E-134 T 29-03-2018 IPR010071 Amino acid adenylation domain AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 864 1268 4.2E-134 T 29-03-2018 IPR010071 Amino acid adenylation domain AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 5115 5508 1.4E-127 T 29-03-2018 IPR010071 Amino acid adenylation domain AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1920 2320 7.5E-145 T 29-03-2018 IPR010071 Amino acid adenylation domain AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Gene3D G3DSA:3.40.50.980 988 1151 4.4E-38 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Gene3D G3DSA:3.40.50.980 2045 2198 5.3E-41 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Gene3D G3DSA:3.40.50.980 4169 4324 2.7E-32 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Gene3D G3DSA:3.40.50.980 3119 3272 5.5E-41 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 SUPERFAMILY SSF52777 28 187 2.0E-27 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 SUPERFAMILY SSF52777 3565 3740 5.23E-53 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 SUPERFAMILY SSF52777 2518 2713 2.22E-29 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Gene3D G3DSA:3.40.50.1820 5672 5945 1.3E-20 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Gene3D G3DSA:1.10.1200.10 3488 3547 1.7E-20 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 SMART SM00824 Thioesterase 5684 5856 5.2E-5 T 29-03-2018 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1380 1395 - T 29-03-2018 IPR006162 Phosphopantetheine attachment site AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 SUPERFAMILY SSF52777 1442 1614 3.56E-50 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Pfam PF13193 AMP-binding enzyme C-terminal domain 1252 1329 6.9E-13 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Pfam PF13193 AMP-binding enzyme C-terminal domain 3378 3454 3.3E-14 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Pfam PF13193 AMP-binding enzyme C-terminal domain 2304 2380 3.3E-14 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Pfam PF13193 AMP-binding enzyme C-terminal domain 5492 5568 2.9E-9 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Pfam PF13193 AMP-binding enzyme C-terminal domain 4424 4500 5.2E-12 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Pfam PF00975 Thioesterase domain 5682 5929 6.4E-25 T 29-03-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 SUPERFAMILY SSF47336 3473 3545 6.41E-19 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Gene3D G3DSA:3.10.25.10 467 572 6.8E-8 T 29-03-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 SUPERFAMILY SSF52777 1620 1886 1.67E-56 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 SUPERFAMILY SSF56801 1861 2419 3.01E-176 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 ProSitePatterns PS00455 Putative AMP-binding domain signature. 2039 2050 - T 29-03-2018 IPR020845 AMP-binding, conserved site AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 SUPERFAMILY SSF56801 804 1369 9.29E-162 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 SUPERFAMILY SSF47336 5587 5660 1.14E-19 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 SUPERFAMILY SSF47336 1348 1420 2.36E-17 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 SUPERFAMILY SSF52777 207 437 1.45E-23 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Gene3D G3DSA:3.40.50.980 4016 4168 9.9E-49 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Gene3D G3DSA:3.40.50.980 834 987 1.6E-46 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Gene3D G3DSA:3.40.50.980 1890 2044 9.2E-49 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Gene3D G3DSA:3.40.50.980 2964 3118 1.1E-49 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Pfam PF00550 Phosphopantetheine attachment site 2409 2469 7.5E-11 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Pfam PF00550 Phosphopantetheine attachment site 1358 1419 2.3E-9 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Pfam PF00550 Phosphopantetheine attachment site 4530 4590 2.4E-10 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Pfam PF00550 Phosphopantetheine attachment site 3483 3543 6.6E-12 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Pfam PF00550 Phosphopantetheine attachment site 5598 5659 1.1E-11 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 SUPERFAMILY SSF52777 4822 5057 5.34E-44 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Pfam PF00668 Condensation domain 2519 2953 3.0E-42 T 29-03-2018 IPR001242 Condensation domain AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Pfam PF00668 Condensation domain 28 362 2.1E-38 T 29-03-2018 IPR001242 Condensation domain AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Pfam PF00668 Condensation domain 1438 1879 3.7E-100 T 29-03-2018 IPR001242 Condensation domain AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Pfam PF00668 Condensation domain 3563 4005 1.1E-105 T 29-03-2018 IPR001242 Condensation domain AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Pfam PF00668 Condensation domain 4640 5071 4.9E-46 T 29-03-2018 IPR001242 Condensation domain AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Gene3D G3DSA:3.40.50.980 5208 5395 7.3E-41 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 SUPERFAMILY SSF52777 2701 2960 5.0E-43 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Gene3D G3DSA:1.10.1200.10 1360 1421 1.0E-19 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Gene3D G3DSA:1.10.1200.10 4531 4601 1.1E-19 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 SUPERFAMILY SSF50486 469 571 1.08E-8 T 29-03-2018 IPR011034 Formyl transferase, C-terminal-like GO:0003824 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Gene3D G3DSA:3.40.50.980 5085 5207 3.2E-36 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 SMART SM00823 Phosphopantetheine attachment site 1356 1424 0.075 T 29-03-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 SMART SM00823 Phosphopantetheine attachment site 3480 3548 0.0046 T 29-03-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 SMART SM00823 Phosphopantetheine attachment site 4527 4595 0.0059 T 29-03-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 SMART SM00823 Phosphopantetheine attachment site 2406 2474 0.041 T 29-03-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 SMART SM00823 Phosphopantetheine attachment site 5595 5663 1.6E-6 T 29-03-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 ProSitePatterns PS00455 Putative AMP-binding domain signature. 4162 4173 - T 29-03-2018 IPR020845 AMP-binding, conserved site AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 SUPERFAMILY SSF52777 590 827 1.45E-9 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Gene3D G3DSA:3.30.559.10 4626 4828 2.5E-27 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Gene3D G3DSA:3.30.559.10 2506 2708 1.2E-27 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Gene3D G3DSA:3.30.559.10 1 205 2.6E-21 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 ProSitePatterns PS00012 Phosphopantetheine attachment site. 3504 3519 - T 29-03-2018 IPR006162 Phosphopantetheine attachment site AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 SUPERFAMILY SSF56801 3985 4540 7.85E-160 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 ProSitePatterns PS00455 Putative AMP-binding domain signature. 5228 5239 - T 29-03-2018 IPR020845 AMP-binding, conserved site AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 ProSitePatterns PS00455 Putative AMP-binding domain signature. 3113 3124 - T 29-03-2018 IPR020845 AMP-binding, conserved site AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 SUPERFAMILY SSF56801 5053 5608 4.06E-158 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Pfam PF00501 AMP-binding enzyme 1899 2296 3.6E-109 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Pfam PF00501 AMP-binding enzyme 2973 3370 9.0E-109 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Pfam PF00501 AMP-binding enzyme 843 1244 1.6E-95 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Pfam PF00501 AMP-binding enzyme 5094 5484 1.8E-97 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Pfam PF00501 AMP-binding enzyme 4025 4416 7.9E-100 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Gene3D G3DSA:3.30.300.30 5479 5600 3.1E-39 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Gene3D G3DSA:3.30.300.30 4411 4530 8.7E-39 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Gene3D G3DSA:3.30.300.30 1239 1359 5.0E-41 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Gene3D G3DSA:3.30.300.30 3365 3487 3.9E-43 T 29-03-2018 AM354_RS16610 5ece771ef4d83d638479d3988d91417d 5950 Gene3D G3DSA:3.30.300.30 2291 2411 3.9E-43 T 29-03-2018 AM354_RS15245 b533f9726485d458f8dd3513cd9793ea 599 Pfam PF00501 AMP-binding enzyme 11 409 1.7E-96 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM354_RS15245 b533f9726485d458f8dd3513cd9793ea 599 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 32 433 7.8E-130 T 29-03-2018 IPR010071 Amino acid adenylation domain AM354_RS15245 b533f9726485d458f8dd3513cd9793ea 599 SUPERFAMILY SSF47336 518 588 1.06E-13 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS15245 b533f9726485d458f8dd3513cd9793ea 599 Gene3D G3DSA:3.40.50.980 158 313 4.5E-41 T 29-03-2018 AM354_RS15245 b533f9726485d458f8dd3513cd9793ea 599 Gene3D G3DSA:2.30.38.10 317 399 3.7E-20 T 29-03-2018 AM354_RS15245 b533f9726485d458f8dd3513cd9793ea 599 Pfam PF00550 Phosphopantetheine attachment site 524 587 1.0E-11 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS15245 b533f9726485d458f8dd3513cd9793ea 599 Gene3D G3DSA:3.40.50.980 2 157 2.1E-45 T 29-03-2018 AM354_RS15245 b533f9726485d458f8dd3513cd9793ea 599 Pfam PF13193 AMP-binding enzyme C-terminal domain 417 493 3.0E-5 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain AM354_RS15245 b533f9726485d458f8dd3513cd9793ea 599 SUPERFAMILY SSF56801 6 533 1.05E-145 T 29-03-2018 AM354_RS15245 b533f9726485d458f8dd3513cd9793ea 599 ProSitePatterns PS00455 Putative AMP-binding domain signature. 152 163 - T 29-03-2018 IPR020845 AMP-binding, conserved site AM354_RS15245 b533f9726485d458f8dd3513cd9793ea 599 Gene3D G3DSA:3.30.300.30 404 527 2.8E-28 T 29-03-2018 AM354_RS15245 b533f9726485d458f8dd3513cd9793ea 599 Gene3D G3DSA:1.10.1200.10 528 594 9.9E-17 T 29-03-2018 AM354_RS20210 36ff39e4ca7672e32ba2bf4b4ce51928 451 SUPERFAMILY SSF50156 86 192 2.23E-11 T 29-03-2018 IPR001478 PDZ domain GO:0005515 AM354_RS20210 36ff39e4ca7672e32ba2bf4b4ce51928 451 SUPERFAMILY SSF50156 195 292 6.18E-19 T 29-03-2018 IPR001478 PDZ domain GO:0005515 AM354_RS20210 36ff39e4ca7672e32ba2bf4b4ce51928 451 Gene3D G3DSA:2.30.42.10 126 220 8.0E-10 T 29-03-2018 AM354_RS20210 36ff39e4ca7672e32ba2bf4b4ce51928 451 SMART SM00228 211 280 1.0E-9 T 29-03-2018 IPR001478 PDZ domain GO:0005515 AM354_RS20210 36ff39e4ca7672e32ba2bf4b4ce51928 451 SMART SM00228 115 186 0.5 T 29-03-2018 IPR001478 PDZ domain GO:0005515 AM354_RS20210 36ff39e4ca7672e32ba2bf4b4ce51928 451 Gene3D G3DSA:2.30.42.10 221 310 7.8E-19 T 29-03-2018 AM354_RS20210 36ff39e4ca7672e32ba2bf4b4ce51928 451 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 3 451 1.9E-158 T 29-03-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 AM354_RS20210 36ff39e4ca7672e32ba2bf4b4ce51928 451 Pfam PF02163 Peptidase family M50 10 439 6.6E-87 T 29-03-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889|Reactome: R-MMU-8963889 AM354_RS20210 36ff39e4ca7672e32ba2bf4b4ce51928 451 Pfam PF13180 PDZ domain 213 286 2.2E-9 T 29-03-2018 IPR001478 PDZ domain GO:0005515 AM354_RS13225 ad08054855d893e83d602c09769dccbd 720 Gene3D G3DSA:3.40.50.300 385 657 2.2E-53 T 29-03-2018 AM354_RS13225 ad08054855d893e83d602c09769dccbd 720 SUPERFAMILY SSF52540 4 642 2.66E-184 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS13225 ad08054855d893e83d602c09769dccbd 720 Gene3D G3DSA:3.40.50.300 4 147 6.2E-29 T 29-03-2018 AM354_RS13225 ad08054855d893e83d602c09769dccbd 720 Gene3D G3DSA:3.40.50.300 149 282 6.9E-33 T 29-03-2018 AM354_RS13225 ad08054855d893e83d602c09769dccbd 720 Gene3D G3DSA:3.40.50.300 283 384 7.2E-27 T 29-03-2018 AM354_RS13225 ad08054855d893e83d602c09769dccbd 720 Pfam PF00580 UvrD/REP helicase N-terminal domain 10 271 1.2E-76 T 29-03-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 AM354_RS13225 ad08054855d893e83d602c09769dccbd 720 Pfam PF13361 UvrD-like helicase C-terminal domain 277 616 3.5E-76 T 29-03-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AM354_RS13225 ad08054855d893e83d602c09769dccbd 720 TIGRFAM TIGR01075 uvrD: DNA helicase II 6 718 0.0 T 29-03-2018 IPR005753 DNA helicase, ATP-dependent, UvrD type GO:0004003|GO:0005737|GO:0006268 AM354_RS22355 9c4512e94c953fcdf669a9820a71cc61 673 SUPERFAMILY SSF50249 318 400 7.71E-29 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS22355 9c4512e94c953fcdf669a9820a71cc61 673 SUPERFAMILY SSF56091 2 316 9.44E-123 T 29-03-2018 AM354_RS22355 9c4512e94c953fcdf669a9820a71cc61 673 Gene3D G3DSA:3.30.470.30 119 241 7.4E-54 T 29-03-2018 AM354_RS22355 9c4512e94c953fcdf669a9820a71cc61 673 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 115 144 - T 29-03-2018 IPR018239 NAD-dependent DNA ligase, active site AM354_RS22355 9c4512e94c953fcdf669a9820a71cc61 673 Pfam PF12826 Helix-hairpin-helix motif 510 573 2.0E-20 T 29-03-2018 AM354_RS22355 9c4512e94c953fcdf669a9820a71cc61 673 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 322 398 6.1E-36 T 29-03-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 AM354_RS22355 9c4512e94c953fcdf669a9820a71cc61 673 Gene3D G3DSA:1.10.150.20 503 565 1.2E-22 T 29-03-2018 AM354_RS22355 9c4512e94c953fcdf669a9820a71cc61 673 SMART SM00292 597 672 1.1E-13 T 29-03-2018 IPR001357 BRCT domain AM354_RS22355 9c4512e94c953fcdf669a9820a71cc61 673 Gene3D G3DSA:3.30.1490.70 242 321 1.6E-24 T 29-03-2018 AM354_RS22355 9c4512e94c953fcdf669a9820a71cc61 673 Gene3D G3DSA:1.10.287.610 1 67 4.3E-26 T 29-03-2018 AM354_RS22355 9c4512e94c953fcdf669a9820a71cc61 673 Gene3D G3DSA:1.10.150.20 432 502 5.6E-26 T 29-03-2018 AM354_RS22355 9c4512e94c953fcdf669a9820a71cc61 673 SMART SM00278 544 563 310.0 T 29-03-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AM354_RS22355 9c4512e94c953fcdf669a9820a71cc61 673 SMART SM00278 480 499 3.4 T 29-03-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AM354_RS22355 9c4512e94c953fcdf669a9820a71cc61 673 SMART SM00278 512 531 200.0 T 29-03-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AM354_RS22355 9c4512e94c953fcdf669a9820a71cc61 673 SMART SM00278 446 465 15.0 T 29-03-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AM354_RS22355 9c4512e94c953fcdf669a9820a71cc61 673 PIRSF PIRSF001604 1 673 1.6E-253 T 29-03-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 AM354_RS22355 9c4512e94c953fcdf669a9820a71cc61 673 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 407 434 4.3E-11 T 29-03-2018 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 AM354_RS22355 9c4512e94c953fcdf669a9820a71cc61 673 SUPERFAMILY SSF47781 403 580 4.08E-60 T 29-03-2018 IPR010994 RuvA domain 2-like AM354_RS22355 9c4512e94c953fcdf669a9820a71cc61 673 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 4 318 1.5E-137 T 29-03-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 AM354_RS22355 9c4512e94c953fcdf669a9820a71cc61 673 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 331 346 - T 29-03-2018 IPR033136 NAD-dependent DNA ligase, conserved site AM354_RS22355 9c4512e94c953fcdf669a9820a71cc61 673 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 598 670 3.3E-13 T 29-03-2018 IPR001357 BRCT domain AM354_RS22355 9c4512e94c953fcdf669a9820a71cc61 673 SUPERFAMILY SSF52113 598 670 4.09E-19 T 29-03-2018 IPR001357 BRCT domain AM354_RS22355 9c4512e94c953fcdf669a9820a71cc61 673 Hamap MF_01588 DNA ligase [ligA]. 2 671 54.76 T 29-03-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 AM354_RS22355 9c4512e94c953fcdf669a9820a71cc61 673 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 11 667 9.6E-268 T 29-03-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 AM354_RS22355 9c4512e94c953fcdf669a9820a71cc61 673 Gene3D G3DSA:3.40.50.10190 566 672 1.8E-23 T 29-03-2018 IPR001357 BRCT domain AM354_RS22355 9c4512e94c953fcdf669a9820a71cc61 673 Gene3D G3DSA:2.40.50.140 322 390 1.5E-34 T 29-03-2018 AM354_RS22355 9c4512e94c953fcdf669a9820a71cc61 673 SMART SM00532 3 448 1.9E-283 T 29-03-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 AM354_RS22355 9c4512e94c953fcdf669a9820a71cc61 673 Pfam PF14520 Helix-hairpin-helix domain 446 502 8.1E-5 T 29-03-2018 AM354_RS19125 21b7474f34efd835140784a9b4ef7961 51 Pfam PF01848 Hok/gef family 11 47 3.1E-17 T 29-03-2018 IPR000021 Hok/gef cell toxic protein GO:0016020 AM354_RS19125 21b7474f34efd835140784a9b4ef7961 51 ProDom PD005979 PLASMID MEMBRANE TRANSMEMBRANE POST-SEGREGATION KILLING INHERITANCE ALTERING PERMEABILITY STABLE MAINTENANCE 2 49 6.0E-9 T 29-03-2018 IPR000021 Hok/gef cell toxic protein GO:0016020 AM354_RS19125 21b7474f34efd835140784a9b4ef7961 51 ProSitePatterns PS00556 Hok/gef family cell toxic proteins signature. 11 30 - T 29-03-2018 IPR018084 Hok/gef cell toxic protein, conserved site GO:0016020 AM354_RS19125 21b7474f34efd835140784a9b4ef7961 51 PRINTS PR00281 Hok/Gef cell toxic protein family signature 6 24 2.7E-11 T 29-03-2018 IPR000021 Hok/gef cell toxic protein GO:0016020 AM354_RS19125 21b7474f34efd835140784a9b4ef7961 51 PRINTS PR00281 Hok/Gef cell toxic protein family signature 26 48 2.7E-11 T 29-03-2018 IPR000021 Hok/gef cell toxic protein GO:0016020 AM354_RS00080 5562b481d17169f07da3b11338ba3604 314 Gene3D G3DSA:3.40.50.1980 196 314 2.7E-23 T 29-03-2018 AM354_RS00080 5562b481d17169f07da3b11338ba3604 314 SUPERFAMILY SSF53807 29 314 2.45E-76 T 29-03-2018 AM354_RS00080 5562b481d17169f07da3b11338ba3604 314 Pfam PF01297 Zinc-uptake complex component A periplasmic 30 307 6.6E-56 T 29-03-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 AM354_RS00080 5562b481d17169f07da3b11338ba3604 314 Gene3D G3DSA:3.40.50.1980 29 195 2.4E-44 T 29-03-2018 AM354_RS16760 f694c74aaa683e8ccf59bb091271fda4 303 SUPERFAMILY SSF46785 4 109 1.56E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS16760 f694c74aaa683e8ccf59bb091271fda4 303 Pfam PF03466 LysR substrate binding domain 89 291 5.1E-38 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS16760 f694c74aaa683e8ccf59bb091271fda4 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 3.1E-20 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS16760 f694c74aaa683e8ccf59bb091271fda4 303 SUPERFAMILY SSF53850 90 295 1.02E-39 T 29-03-2018 AM354_RS16760 f694c74aaa683e8ccf59bb091271fda4 303 Gene3D G3DSA:3.40.190.10 173 259 5.9E-18 T 29-03-2018 AM354_RS16760 f694c74aaa683e8ccf59bb091271fda4 303 Gene3D G3DSA:1.10.10.10 3 84 3.0E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS16760 f694c74aaa683e8ccf59bb091271fda4 303 Gene3D G3DSA:3.40.190.10 89 172 4.4E-15 T 29-03-2018 AM354_RS17850 1feb90f876dde8004fbd3fe37d682828 815 SUPERFAMILY SSF81653 302 398 5.89E-28 T 29-03-2018 IPR008250 P-type ATPase, A domain Reactome: R-HSA-936837 AM354_RS17850 1feb90f876dde8004fbd3fe37d682828 815 SUPERFAMILY SSF47240 25 87 3.49E-5 T 29-03-2018 IPR009078 Ferritin-like superfamily AM354_RS17850 1feb90f876dde8004fbd3fe37d682828 815 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 502 508 - T 29-03-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 AM354_RS17850 1feb90f876dde8004fbd3fe37d682828 815 SUPERFAMILY SSF81665 249 301 1.14E-12 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 AM354_RS17850 1feb90f876dde8004fbd3fe37d682828 815 SUPERFAMILY SSF81665 399 494 1.14E-12 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 AM354_RS17850 1feb90f876dde8004fbd3fe37d682828 815 Pfam PF00122 E1-E2 ATPase 298 479 1.8E-57 T 29-03-2018 AM354_RS17850 1feb90f876dde8004fbd3fe37d682828 815 Gene3D G3DSA:3.40.50.1000 627 763 5.9E-41 T 29-03-2018 IPR023214 HAD-like domain AM354_RS17850 1feb90f876dde8004fbd3fe37d682828 815 PRINTS PR00943 Copper-transporting ATPase signature 676 693 3.6E-11 T 29-03-2018 AM354_RS17850 1feb90f876dde8004fbd3fe37d682828 815 PRINTS PR00943 Copper-transporting ATPase signature 421 435 3.6E-11 T 29-03-2018 AM354_RS17850 1feb90f876dde8004fbd3fe37d682828 815 PRINTS PR00943 Copper-transporting ATPase signature 267 286 3.6E-11 T 29-03-2018 AM354_RS17850 1feb90f876dde8004fbd3fe37d682828 815 PRINTS PR00943 Copper-transporting ATPase signature 483 498 3.6E-11 T 29-03-2018 AM354_RS17850 1feb90f876dde8004fbd3fe37d682828 815 PRINTS PR00943 Copper-transporting ATPase signature 287 305 3.6E-11 T 29-03-2018 AM354_RS17850 1feb90f876dde8004fbd3fe37d682828 815 PRINTS PR00943 Copper-transporting ATPase signature 209 228 3.6E-11 T 29-03-2018 AM354_RS17850 1feb90f876dde8004fbd3fe37d682828 815 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 224 808 2.5E-189 T 29-03-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AM354_RS17850 1feb90f876dde8004fbd3fe37d682828 815 SMART SM00746 32 70 8.9E-9 T 29-03-2018 IPR011017 TRASH domain AM354_RS17850 1feb90f876dde8004fbd3fe37d682828 815 Gene3D G3DSA:1.10.620.20 3 128 1.1E-18 T 29-03-2018 AM354_RS17850 1feb90f876dde8004fbd3fe37d682828 815 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 348 362 7.5E-31 T 29-03-2018 AM354_RS17850 1feb90f876dde8004fbd3fe37d682828 815 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 646 656 7.5E-31 T 29-03-2018 AM354_RS17850 1feb90f876dde8004fbd3fe37d682828 815 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 699 718 7.5E-31 T 29-03-2018 AM354_RS17850 1feb90f876dde8004fbd3fe37d682828 815 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 500 514 7.5E-31 T 29-03-2018 AM354_RS17850 1feb90f876dde8004fbd3fe37d682828 815 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 722 734 7.5E-31 T 29-03-2018 AM354_RS17850 1feb90f876dde8004fbd3fe37d682828 815 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 624 635 7.5E-31 T 29-03-2018 AM354_RS17850 1feb90f876dde8004fbd3fe37d682828 815 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 269 777 7.5E-90 T 29-03-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AM354_RS17850 1feb90f876dde8004fbd3fe37d682828 815 Pfam PF00702 haloacid dehalogenase-like hydrolase 496 713 7.3E-45 T 29-03-2018 AM354_RS17850 1feb90f876dde8004fbd3fe37d682828 815 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 206 809 3.6E-178 T 29-03-2018 AM354_RS17850 1feb90f876dde8004fbd3fe37d682828 815 Pfam PF04945 YHS domain 30 76 3.4E-19 T 29-03-2018 IPR007029 YHS domain AM354_RS17850 1feb90f876dde8004fbd3fe37d682828 815 Gene3D G3DSA:1.20.1110.10 254 515 1.7E-46 T 29-03-2018 AM354_RS17850 1feb90f876dde8004fbd3fe37d682828 815 Gene3D G3DSA:3.40.1110.10 516 626 2.7E-31 T 29-03-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AM354_RS17850 1feb90f876dde8004fbd3fe37d682828 815 SUPERFAMILY SSF56784 557 806 1.47E-55 T 29-03-2018 IPR023214 HAD-like domain AM354_RS17850 1feb90f876dde8004fbd3fe37d682828 815 SUPERFAMILY SSF56784 498 518 1.47E-55 T 29-03-2018 IPR023214 HAD-like domain AM354_RS06520 d1587186a7a3c2fc0581d32a88ba832a 251 TIGRFAM TIGR02355 moeB: molybdopterin synthase sulfurylase MoeB 9 248 2.0E-121 T 29-03-2018 IPR012730 Molybdopterin synthase sulfurylase MoeB GO:0006777 MetaCyc: PWY-6823 AM354_RS06520 d1587186a7a3c2fc0581d32a88ba832a 251 Pfam PF00899 ThiF family 13 245 4.0E-63 T 29-03-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 AM354_RS06520 d1587186a7a3c2fc0581d32a88ba832a 251 Gene3D G3DSA:3.40.50.720 2 250 1.6E-77 T 29-03-2018 AM354_RS06520 d1587186a7a3c2fc0581d32a88ba832a 251 SUPERFAMILY SSF69572 4 249 5.23E-88 T 29-03-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 AM354_RS14600 2e62710c295cca01f8ab5902133d7130 105 Hamap MF_00744 Met repressor [metJ]. 1 105 40.23 T 29-03-2018 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 AM354_RS14600 2e62710c295cca01f8ab5902133d7130 105 SUPERFAMILY SSF47598 2 105 3.11E-57 T 29-03-2018 IPR010985 Ribbon-helix-helix GO:0006355 AM354_RS14600 2e62710c295cca01f8ab5902133d7130 105 Pfam PF01340 Met Apo-repressor, MetJ 3 99 4.2E-58 T 29-03-2018 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 AM354_RS14600 2e62710c295cca01f8ab5902133d7130 105 ProDom PD020365 REPRESSOR MET BIOSYNTHESIS TRANSCRIPTION METJ METHIONINE REGULON DNA-BINDING REGULATORY AMINO-ACID 10 101 1.0E-48 T 29-03-2018 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 AM354_RS14600 2e62710c295cca01f8ab5902133d7130 105 Gene3D G3DSA:1.10.140.10 3 103 7.4E-59 T 29-03-2018 IPR023453 Methionine repressor MetJ domain AM354_RS10685 e0829c7556a01afe78a190318abcac05 328 TIGRFAM TIGR01276 thiB: thiamin/thiamin pyrophosphate ABC transporter, thiamin/thiamin pyrophospate-binding protein 9 328 7.4E-165 T 29-03-2018 IPR005967 Thiamin/thiamin pyrophosphate ABC transporter, substrate-binding protein, Proteobacteria GO:0015888|GO:0030288|GO:0030975 AM354_RS10685 e0829c7556a01afe78a190318abcac05 328 TIGRFAM TIGR01254 sfuA: ABC transporter periplasmic binding protein, thiB subfamily 19 322 4.3E-146 T 29-03-2018 IPR005948 Thiamine/thiamin pyrophosphate-binding periplasmic protein, ABC transporter GO:0015888|GO:0030288|GO:0030975 AM354_RS10685 e0829c7556a01afe78a190318abcac05 328 Gene3D G3DSA:3.40.190.10 169 312 8.3E-13 T 29-03-2018 AM354_RS10685 e0829c7556a01afe78a190318abcac05 328 Gene3D G3DSA:3.40.190.10 20 166 1.1E-21 T 29-03-2018 AM354_RS10685 e0829c7556a01afe78a190318abcac05 328 Pfam PF13343 Bacterial extracellular solute-binding protein 75 289 5.6E-18 T 29-03-2018 AM354_RS10685 e0829c7556a01afe78a190318abcac05 328 SUPERFAMILY SSF53850 22 323 2.91E-63 T 29-03-2018 AM354_RS18265 fa5f16ca4d04c650278b75751a3b333e 170 Pfam PF01252 Signal peptidase (SPase) II 18 154 9.9E-37 T 29-03-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 AM354_RS18265 fa5f16ca4d04c650278b75751a3b333e 170 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 54 62 1.7E-17 T 29-03-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 AM354_RS18265 fa5f16ca4d04c650278b75751a3b333e 170 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 136 152 1.7E-17 T 29-03-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 AM354_RS18265 fa5f16ca4d04c650278b75751a3b333e 170 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 100 115 1.7E-17 T 29-03-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 AM354_RS18265 fa5f16ca4d04c650278b75751a3b333e 170 TIGRFAM TIGR00077 lspA: signal peptidase II 10 162 3.9E-41 T 29-03-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 AM354_RS18265 fa5f16ca4d04c650278b75751a3b333e 170 ProSitePatterns PS00855 Signal peptidases II signature. 103 115 - T 29-03-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 AM354_RS18265 fa5f16ca4d04c650278b75751a3b333e 170 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 6 161 16.138 T 29-03-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 AM354_RS06430 496f72ad4d67c608b499d17fe21a5e60 247 PIRSF PIRSF005011 1 247 5.5E-155 T 29-03-2018 IPR023604 Uncharacterised protein family SanA AM354_RS06430 496f72ad4d67c608b499d17fe21a5e60 247 Gene3D G3DSA:3.40.50.620 37 177 3.8E-20 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS06430 496f72ad4d67c608b499d17fe21a5e60 247 Pfam PF02698 DUF218 domain 48 170 2.0E-18 T 29-03-2018 IPR003848 Domain of unknown function DUF218 AM354_RS16410 df8e40e372d99cd47e0d5a5822537cf0 369 Pfam PF08402 TOBE domain 281 353 1.4E-11 T 29-03-2018 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 AM354_RS16410 df8e40e372d99cd47e0d5a5822537cf0 369 Gene3D G3DSA:2.40.50.100 251 294 8.9E-10 T 29-03-2018 AM354_RS16410 df8e40e372d99cd47e0d5a5822537cf0 369 SUPERFAMILY SSF52540 4 243 6.55E-85 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS16410 df8e40e372d99cd47e0d5a5822537cf0 369 SUPERFAMILY SSF50331 236 362 2.67E-31 T 29-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal AM354_RS16410 df8e40e372d99cd47e0d5a5822537cf0 369 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS16410 df8e40e372d99cd47e0d5a5822537cf0 369 Gene3D G3DSA:2.40.50.140 295 346 2.0E-9 T 29-03-2018 AM354_RS16410 df8e40e372d99cd47e0d5a5822537cf0 369 SMART SM00382 28 211 1.3E-12 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS16410 df8e40e372d99cd47e0d5a5822537cf0 369 Gene3D G3DSA:3.40.50.300 1 250 9.9E-69 T 29-03-2018 AM354_RS16410 df8e40e372d99cd47e0d5a5822537cf0 369 Pfam PF00005 ABC transporter 20 161 4.5E-33 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS02945 1c32f3c240253be8bb5174b9c846afb5 395 Pfam PF03594 Benzoate membrane transport protein 11 384 3.3E-142 T 29-03-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 AM354_RS02945 1c32f3c240253be8bb5174b9c846afb5 395 TIGRFAM TIGR00843 benE: benzoate transporter 5 386 5.6E-147 T 29-03-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 AM354_RS18495 c8bafa2aa49936bf7b1ae697e7a3dd10 560 Pfam PF09299 Mu transposase, C-terminal 393 455 2.3E-12 T 29-03-2018 IPR015378 Transposase-like, Mu, C-terminal AM354_RS18495 c8bafa2aa49936bf7b1ae697e7a3dd10 560 Pfam PF13518 Helix-turn-helix domain 26 83 4.1E-11 T 29-03-2018 AM354_RS18495 c8bafa2aa49936bf7b1ae697e7a3dd10 560 Pfam PF00665 Integrase core domain 174 312 1.1E-24 T 29-03-2018 IPR001584 Integrase, catalytic core GO:0015074 AM354_RS18495 c8bafa2aa49936bf7b1ae697e7a3dd10 560 Gene3D G3DSA:3.30.420.10 171 389 1.2E-38 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS18495 c8bafa2aa49936bf7b1ae697e7a3dd10 560 SUPERFAMILY SSF53098 170 368 1.21E-20 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS18495 c8bafa2aa49936bf7b1ae697e7a3dd10 560 Gene3D G3DSA:2.30.30.130 395 457 1.5E-13 T 29-03-2018 IPR015378 Transposase-like, Mu, C-terminal AM354_RS18495 c8bafa2aa49936bf7b1ae697e7a3dd10 560 Gene3D G3DSA:1.10.10.60 93 156 4.0E-13 T 29-03-2018 AM354_RS25460 197b4dcdacaf00ea2e17d5ecb3f0ee43 199 Gene3D G3DSA:3.40.50.360 1 199 3.4E-32 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS25460 197b4dcdacaf00ea2e17d5ecb3f0ee43 199 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 198 26.934 T 29-03-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 AM354_RS25460 197b4dcdacaf00ea2e17d5ecb3f0ee43 199 Pfam PF02525 Flavodoxin-like fold 2 196 2.5E-37 T 29-03-2018 IPR003680 Flavodoxin-like fold AM354_RS25460 197b4dcdacaf00ea2e17d5ecb3f0ee43 199 SUPERFAMILY SSF52218 1 198 3.42E-47 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS00995 8e801ceda7e986e09765aafc0efa0802 108 PIRSF PIRSF037511 1 108 1.9E-34 T 29-03-2018 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 AM354_RS00995 8e801ceda7e986e09765aafc0efa0802 108 Gene3D G3DSA:3.30.780.10 15 106 1.2E-19 T 29-03-2018 IPR001950 SUI1 domain GO:0003743|GO:0006413 AM354_RS00995 8e801ceda7e986e09765aafc0efa0802 108 SUPERFAMILY SSF55159 5 104 1.57E-25 T 29-03-2018 IPR001950 SUI1 domain GO:0003743|GO:0006413 AM354_RS00995 8e801ceda7e986e09765aafc0efa0802 108 TIGRFAM TIGR01158 SUI1_rel: putative translation initiation factor SUI1 8 108 2.1E-37 T 29-03-2018 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 AM354_RS00995 8e801ceda7e986e09765aafc0efa0802 108 Pfam PF01253 Translation initiation factor SUI1 32 101 9.5E-19 T 29-03-2018 IPR001950 SUI1 domain GO:0003743|GO:0006413 AM354_RS02700 1bbe4455bd49292a865d09bf5fcd7d2e 122 Pfam PF06932 Protein of unknown function (DUF1283) 39 122 5.6E-40 T 29-03-2018 IPR009700 Protein of unknown function DUF1283 AM354_RS02700 1bbe4455bd49292a865d09bf5fcd7d2e 122 Hamap MF_01581 UPF0482 protein YnfB [ynfB]. 1 122 32.351 T 29-03-2018 IPR009700 Protein of unknown function DUF1283 AM354_RS02700 1bbe4455bd49292a865d09bf5fcd7d2e 122 ProDom PD073251 YNFB PERIPLASMIC SECRETED ORF9 PRECURSOR SIGNAL SIMILAR ECS2289 EXPORTED ESCHERICHIA 29 122 2.0E-22 T 29-03-2018 IPR009700 Protein of unknown function DUF1283 AM354_RS09765 81a64840f13e6e1e431975acff6da24e 367 Gene3D G3DSA:3.40.1160.10 1 265 1.8E-61 T 29-03-2018 AM354_RS09765 81a64840f13e6e1e431975acff6da24e 367 Pfam PF00696 Amino acid kinase family 6 234 1.7E-43 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase AM354_RS09765 81a64840f13e6e1e431975acff6da24e 367 TIGRFAM TIGR01027 proB: glutamate 5-kinase 5 365 8.0E-152 T 29-03-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AM354_RS09765 81a64840f13e6e1e431975acff6da24e 367 Pfam PF01472 PUA domain 276 350 1.1E-21 T 29-03-2018 IPR002478 PUA domain GO:0003723 AM354_RS09765 81a64840f13e6e1e431975acff6da24e 367 SMART SM00359 276 359 1.1E-23 T 29-03-2018 IPR002478 PUA domain GO:0003723 AM354_RS09765 81a64840f13e6e1e431975acff6da24e 367 Hamap MF_00456 Glutamate 5-kinase [proB]. 5 263 35.999 T 29-03-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AM354_RS09765 81a64840f13e6e1e431975acff6da24e 367 PRINTS PR00474 Glutamate 5-kinase family signature 76 104 8.6E-57 T 29-03-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AM354_RS09765 81a64840f13e6e1e431975acff6da24e 367 PRINTS PR00474 Glutamate 5-kinase family signature 148 175 8.6E-57 T 29-03-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AM354_RS09765 81a64840f13e6e1e431975acff6da24e 367 PRINTS PR00474 Glutamate 5-kinase family signature 116 137 8.6E-57 T 29-03-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AM354_RS09765 81a64840f13e6e1e431975acff6da24e 367 PRINTS PR00474 Glutamate 5-kinase family signature 209 229 8.6E-57 T 29-03-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AM354_RS09765 81a64840f13e6e1e431975acff6da24e 367 PRINTS PR00474 Glutamate 5-kinase family signature 42 56 8.6E-57 T 29-03-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AM354_RS09765 81a64840f13e6e1e431975acff6da24e 367 ProSitePatterns PS00902 Glutamate 5-kinase signature. 207 224 - T 29-03-2018 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AM354_RS09765 81a64840f13e6e1e431975acff6da24e 367 SUPERFAMILY SSF53633 6 256 8.38E-65 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase AM354_RS09765 81a64840f13e6e1e431975acff6da24e 367 SUPERFAMILY SSF88697 276 366 7.18E-24 T 29-03-2018 IPR015947 PUA-like domain AM354_RS09765 81a64840f13e6e1e431975acff6da24e 367 Gene3D G3DSA:2.30.130.10 274 366 4.3E-28 T 29-03-2018 IPR002478 PUA domain GO:0003723 AM354_RS09765 81a64840f13e6e1e431975acff6da24e 367 PIRSF PIRSF000729 1 367 2.9E-141 T 29-03-2018 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 AM354_RS20700 8edb728c0c898c306327417c0a7fc3ad 1029 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 8.9E-75 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS20700 8edb728c0c898c306327417c0a7fc3ad 1029 PRINTS PR00702 Acriflavin resistance protein family signature 606 620 8.9E-75 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS20700 8edb728c0c898c306327417c0a7fc3ad 1029 PRINTS PR00702 Acriflavin resistance protein family signature 541 558 8.9E-75 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS20700 8edb728c0c898c306327417c0a7fc3ad 1029 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 8.9E-75 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS20700 8edb728c0c898c306327417c0a7fc3ad 1029 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 8.9E-75 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS20700 8edb728c0c898c306327417c0a7fc3ad 1029 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 8.9E-75 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS20700 8edb728c0c898c306327417c0a7fc3ad 1029 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 8.9E-75 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS20700 8edb728c0c898c306327417c0a7fc3ad 1029 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 8.9E-75 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS20700 8edb728c0c898c306327417c0a7fc3ad 1029 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 8.9E-75 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS20700 8edb728c0c898c306327417c0a7fc3ad 1029 Gene3D G3DSA:3.30.70.1430 556 650 1.0E-12 T 29-03-2018 AM354_RS20700 8edb728c0c898c306327417c0a7fc3ad 1029 SUPERFAMILY SSF82693 554 653 4.24E-19 T 29-03-2018 AM354_RS20700 8edb728c0c898c306327417c0a7fc3ad 1029 SUPERFAMILY SSF82866 816 1004 2.09E-41 T 29-03-2018 AM354_RS20700 8edb728c0c898c306327417c0a7fc3ad 1029 SUPERFAMILY SSF82693 788 834 1.73E-15 T 29-03-2018 AM354_RS20700 8edb728c0c898c306327417c0a7fc3ad 1029 SUPERFAMILY SSF82693 653 701 1.73E-15 T 29-03-2018 AM354_RS20700 8edb728c0c898c306327417c0a7fc3ad 1029 Gene3D G3DSA:3.30.2090.10 180 269 2.3E-16 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS20700 8edb728c0c898c306327417c0a7fc3ad 1029 SUPERFAMILY SSF82693 137 181 4.66E-16 T 29-03-2018 AM354_RS20700 8edb728c0c898c306327417c0a7fc3ad 1029 SUPERFAMILY SSF82693 268 322 4.66E-16 T 29-03-2018 AM354_RS20700 8edb728c0c898c306327417c0a7fc3ad 1029 SUPERFAMILY SSF82714 702 786 6.8E-19 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS20700 8edb728c0c898c306327417c0a7fc3ad 1029 SUPERFAMILY SSF82714 183 265 5.1E-17 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS20700 8edb728c0c898c306327417c0a7fc3ad 1029 SUPERFAMILY SSF82866 296 489 1.7E-47 T 29-03-2018 AM354_RS20700 8edb728c0c898c306327417c0a7fc3ad 1029 Pfam PF00873 AcrB/AcrD/AcrF family 4 1004 1.5E-258 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS20700 8edb728c0c898c306327417c0a7fc3ad 1029 Gene3D G3DSA:3.30.2090.10 701 787 8.9E-17 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS20700 8edb728c0c898c306327417c0a7fc3ad 1029 Gene3D G3DSA:1.20.1640.10 290 503 6.6E-43 T 29-03-2018 AM354_RS20700 8edb728c0c898c306327417c0a7fc3ad 1029 SUPERFAMILY SSF82693 42 130 1.03E-18 T 29-03-2018 AM354_RS20700 8edb728c0c898c306327417c0a7fc3ad 1029 Gene3D G3DSA:1.20.1640.10 788 1007 5.4E-38 T 29-03-2018 AM354_RS20700 8edb728c0c898c306327417c0a7fc3ad 1029 Gene3D G3DSA:3.30.70.1430 41 141 4.0E-21 T 29-03-2018 AM354_RS04420 3499fb9933e68e2c1d1a81caa326e880 1562 Gene3D G3DSA:1.10.1200.10 1051 1152 6.0E-11 T 29-03-2018 AM354_RS04420 3499fb9933e68e2c1d1a81caa326e880 1562 Pfam PF00668 Condensation domain 644 955 7.1E-24 T 29-03-2018 IPR001242 Condensation domain AM354_RS04420 3499fb9933e68e2c1d1a81caa326e880 1562 SUPERFAMILY SSF52777 1162 1295 1.1E-8 T 29-03-2018 AM354_RS04420 3499fb9933e68e2c1d1a81caa326e880 1562 SUPERFAMILY SSF56801 7 491 1.96E-88 T 29-03-2018 AM354_RS04420 3499fb9933e68e2c1d1a81caa326e880 1562 Gene3D G3DSA:3.40.50.980 152 311 6.4E-30 T 29-03-2018 AM354_RS04420 3499fb9933e68e2c1d1a81caa326e880 1562 SUPERFAMILY SSF52777 835 1019 5.11E-12 T 29-03-2018 AM354_RS04420 3499fb9933e68e2c1d1a81caa326e880 1562 Pfam PF00501 AMP-binding enzyme 15 399 1.5E-53 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM354_RS04420 3499fb9933e68e2c1d1a81caa326e880 1562 Gene3D G3DSA:3.30.559.10 647 787 2.0E-10 T 29-03-2018 AM354_RS04420 3499fb9933e68e2c1d1a81caa326e880 1562 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1098 1113 - T 29-03-2018 IPR006162 Phosphopantetheine attachment site AM354_RS04420 3499fb9933e68e2c1d1a81caa326e880 1562 ProSitePatterns PS00455 Putative AMP-binding domain signature. 146 157 - T 29-03-2018 IPR020845 AMP-binding, conserved site AM354_RS04420 3499fb9933e68e2c1d1a81caa326e880 1562 Gene3D G3DSA:2.30.38.10 312 389 2.4E-11 T 29-03-2018 AM354_RS04420 3499fb9933e68e2c1d1a81caa326e880 1562 Gene3D G3DSA:1.10.1200.10 532 577 0.2 T 29-03-2018 AM354_RS04420 3499fb9933e68e2c1d1a81caa326e880 1562 Pfam PF00550 Phosphopantetheine attachment site 1075 1137 4.0E-8 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS04420 3499fb9933e68e2c1d1a81caa326e880 1562 Gene3D G3DSA:3.30.559.10 1215 1319 7.8E-6 T 29-03-2018 AM354_RS04420 3499fb9933e68e2c1d1a81caa326e880 1562 SUPERFAMILY SSF47336 1079 1142 2.75E-9 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS04420 3499fb9933e68e2c1d1a81caa326e880 1562 Gene3D G3DSA:3.40.50.980 2 151 3.4E-18 T 29-03-2018 AM354_RS04420 3499fb9933e68e2c1d1a81caa326e880 1562 Gene3D G3DSA:3.30.300.30 392 501 2.1E-23 T 29-03-2018 AM354_RS04420 3499fb9933e68e2c1d1a81caa326e880 1562 SUPERFAMILY SSF52777 649 804 2.45E-16 T 29-03-2018 AM354_RS13390 eae400810df852417207fd5896f2938c 674 Pfam PF00580 UvrD/REP helicase N-terminal domain 3 265 3.6E-75 T 29-03-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 AM354_RS13390 eae400810df852417207fd5896f2938c 674 Pfam PF13361 UvrD-like helicase C-terminal domain 271 613 5.2E-72 T 29-03-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AM354_RS13390 eae400810df852417207fd5896f2938c 674 TIGRFAM TIGR01074 rep: ATP-dependent DNA helicase Rep 2 666 0.0 T 29-03-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 AM354_RS13390 eae400810df852417207fd5896f2938c 674 SUPERFAMILY SSF52540 2 637 1.09E-164 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS13390 eae400810df852417207fd5896f2938c 674 Gene3D G3DSA:1.10.486.10 377 552 6.4E-37 T 29-03-2018 AM354_RS13390 eae400810df852417207fd5896f2938c 674 Hamap MF_01920 ATP-dependent DNA helicase Rep [rep]. 1 668 41.066 T 29-03-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 AM354_RS13390 eae400810df852417207fd5896f2938c 674 Gene3D G3DSA:3.40.50.300 277 376 3.9E-22 T 29-03-2018 AM354_RS13390 eae400810df852417207fd5896f2938c 674 Gene3D G3DSA:3.40.50.300 1 138 7.0E-26 T 29-03-2018 AM354_RS13390 eae400810df852417207fd5896f2938c 674 Gene3D G3DSA:3.40.50.300 139 276 4.1E-29 T 29-03-2018 AM354_RS25870 7897e0ae197d6b767ade788be28fd2fa 128 Gene3D G3DSA:1.10.10.60 2 60 1.1E-11 T 29-03-2018 AM354_RS25870 7897e0ae197d6b767ade788be28fd2fa 128 SUPERFAMILY SSF46689 60 110 1.52E-13 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS25870 7897e0ae197d6b767ade788be28fd2fa 128 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 76 91 9.4E-7 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM354_RS25870 7897e0ae197d6b767ade788be28fd2fa 128 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 91 107 9.4E-7 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM354_RS25870 7897e0ae197d6b767ade788be28fd2fa 128 Gene3D G3DSA:1.10.10.60 61 115 7.5E-13 T 29-03-2018 AM354_RS25870 7897e0ae197d6b767ade788be28fd2fa 128 SMART SM00342 24 107 4.8E-27 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS25870 7897e0ae197d6b767ade788be28fd2fa 128 SUPERFAMILY SSF46689 10 58 8.69E-8 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS25870 7897e0ae197d6b767ade788be28fd2fa 128 Pfam PF12833 Helix-turn-helix domain 30 108 4.4E-22 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS25870 7897e0ae197d6b767ade788be28fd2fa 128 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 61 103 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM354_RS08725 efcca4809144f5ad8659530fcca7d0ef 1902 Gene3D G3DSA:3.30.559.10 860 1057 2.7E-31 T 29-03-2018 AM354_RS08725 efcca4809144f5ad8659530fcca7d0ef 1902 Gene3D G3DSA:3.40.50.980 290 438 6.0E-32 T 29-03-2018 AM354_RS08725 efcca4809144f5ad8659530fcca7d0ef 1902 Gene3D G3DSA:3.40.50.980 1321 1468 2.6E-37 T 29-03-2018 AM354_RS08725 efcca4809144f5ad8659530fcca7d0ef 1902 Gene3D G3DSA:1.10.1200.10 794 859 5.8E-15 T 29-03-2018 AM354_RS08725 efcca4809144f5ad8659530fcca7d0ef 1902 Gene3D G3DSA:3.40.50.980 1469 1625 3.7E-38 T 29-03-2018 AM354_RS08725 efcca4809144f5ad8659530fcca7d0ef 1902 Gene3D G3DSA:3.40.50.980 439 583 5.0E-32 T 29-03-2018 AM354_RS08725 efcca4809144f5ad8659530fcca7d0ef 1902 SUPERFAMILY SSF52777 872 1064 1.89E-35 T 29-03-2018 AM354_RS08725 efcca4809144f5ad8659530fcca7d0ef 1902 Gene3D G3DSA:1.10.1200.10 1831 1897 4.1E-15 T 29-03-2018 AM354_RS08725 efcca4809144f5ad8659530fcca7d0ef 1902 Pfam PF00550 Phosphopantetheine attachment site 793 855 1.6E-7 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS08725 efcca4809144f5ad8659530fcca7d0ef 1902 Pfam PF00550 Phosphopantetheine attachment site 1829 1888 1.7E-8 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS08725 efcca4809144f5ad8659530fcca7d0ef 1902 SUPERFAMILY SSF56801 291 801 1.44E-131 T 29-03-2018 AM354_RS08725 efcca4809144f5ad8659530fcca7d0ef 1902 Pfam PF00501 AMP-binding enzyme 1330 1715 1.7E-91 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM354_RS08725 efcca4809144f5ad8659530fcca7d0ef 1902 Pfam PF00501 AMP-binding enzyme 297 683 1.3E-80 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM354_RS08725 efcca4809144f5ad8659530fcca7d0ef 1902 SUPERFAMILY SSF47336 784 856 8.11E-13 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS08725 efcca4809144f5ad8659530fcca7d0ef 1902 Gene3D G3DSA:3.30.300.30 678 793 1.6E-31 T 29-03-2018 AM354_RS08725 efcca4809144f5ad8659530fcca7d0ef 1902 Gene3D G3DSA:3.30.300.30 1710 1830 1.6E-27 T 29-03-2018 AM354_RS08725 efcca4809144f5ad8659530fcca7d0ef 1902 Gene3D G3DSA:2.30.38.10 584 675 3.9E-21 T 29-03-2018 AM354_RS08725 efcca4809144f5ad8659530fcca7d0ef 1902 SUPERFAMILY SSF47336 1818 1888 1.96E-12 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS08725 efcca4809144f5ad8659530fcca7d0ef 1902 SUPERFAMILY SSF56801 1327 1836 1.14E-127 T 29-03-2018 AM354_RS08725 efcca4809144f5ad8659530fcca7d0ef 1902 SUPERFAMILY SSF52777 1052 1292 9.64E-50 T 29-03-2018 AM354_RS08725 efcca4809144f5ad8659530fcca7d0ef 1902 Pfam PF00668 Condensation domain 872 1295 3.4E-71 T 29-03-2018 IPR001242 Condensation domain AM354_RS08725 efcca4809144f5ad8659530fcca7d0ef 1902 SMART SM00823 Phosphopantetheine attachment site 790 859 0.0086 T 29-03-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 AM354_RS08725 efcca4809144f5ad8659530fcca7d0ef 1902 SMART SM00823 Phosphopantetheine attachment site 1825 1894 0.082 T 29-03-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 AM354_RS08725 efcca4809144f5ad8659530fcca7d0ef 1902 ProSitePatterns PS00455 Putative AMP-binding domain signature. 433 444 - T 29-03-2018 IPR020845 AMP-binding, conserved site AM354_RS08725 efcca4809144f5ad8659530fcca7d0ef 1902 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1463 1474 - T 29-03-2018 IPR020845 AMP-binding, conserved site AM354_RS08725 efcca4809144f5ad8659530fcca7d0ef 1902 Gene3D G3DSA:2.30.38.10 1627 1708 3.3E-20 T 29-03-2018 AM354_RS08725 efcca4809144f5ad8659530fcca7d0ef 1902 Pfam PF13193 AMP-binding enzyme C-terminal domain 691 764 2.0E-13 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain AM354_RS08725 efcca4809144f5ad8659530fcca7d0ef 1902 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1349 1736 1.7E-110 T 29-03-2018 IPR010071 Amino acid adenylation domain AM354_RS08725 efcca4809144f5ad8659530fcca7d0ef 1902 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 318 707 3.6E-110 T 29-03-2018 IPR010071 Amino acid adenylation domain AM354_RS25185 6189417761e2550cb3918ecb0619ed02 344 SUPERFAMILY SSF50129 7 148 2.36E-43 T 29-03-2018 IPR011032 GroES-like AM354_RS25185 6189417761e2550cb3918ecb0619ed02 344 Pfam PF16884 N-terminal domain of oxidoreductase 9 115 4.4E-41 T 29-03-2018 AM354_RS25185 6189417761e2550cb3918ecb0619ed02 344 Gene3D G3DSA:3.90.180.10 2 151 1.0E-32 T 29-03-2018 AM354_RS25185 6189417761e2550cb3918ecb0619ed02 344 SUPERFAMILY SSF50129 293 340 4.71E-6 T 29-03-2018 IPR011032 GroES-like AM354_RS25185 6189417761e2550cb3918ecb0619ed02 344 SMART SM00829 23 339 3.2E-5 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AM354_RS25185 6189417761e2550cb3918ecb0619ed02 344 Gene3D G3DSA:3.40.50.720 152 282 1.4E-27 T 29-03-2018 AM354_RS25185 6189417761e2550cb3918ecb0619ed02 344 Pfam PF00107 Zinc-binding dehydrogenase 161 299 1.7E-19 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AM354_RS25185 6189417761e2550cb3918ecb0619ed02 344 SUPERFAMILY SSF51735 126 307 2.33E-46 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS08590 697796d89b2a49f583840e4faaf5e708 284 Pfam PF14561 Tetratricopeptide repeat 195 284 9.2E-30 T 29-03-2018 AM354_RS08590 697796d89b2a49f583840e4faaf5e708 284 Pfam PF14559 Tetratricopeptide repeat 124 190 2.7E-18 T 29-03-2018 AM354_RS08590 697796d89b2a49f583840e4faaf5e708 284 Gene3D G3DSA:1.25.40.10 197 284 1.4E-6 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS08590 697796d89b2a49f583840e4faaf5e708 284 Pfam PF00085 Thioredoxin 6 107 3.8E-19 T 29-03-2018 IPR013766 Thioredoxin domain GO:0045454 AM354_RS08590 697796d89b2a49f583840e4faaf5e708 284 Gene3D G3DSA:1.25.40.10 125 196 1.2E-6 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS08590 697796d89b2a49f583840e4faaf5e708 284 SUPERFAMILY SSF52833 3 112 7.08E-31 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS08590 697796d89b2a49f583840e4faaf5e708 284 Gene3D G3DSA:3.40.30.10 2 124 6.8E-28 T 29-03-2018 AM354_RS08590 697796d89b2a49f583840e4faaf5e708 284 SUPERFAMILY SSF48452 114 240 3.45E-6 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS13635 e54f14f6db80c1a853299972d12f004f 613 Gene3D G3DSA:3.40.50.300 1 49 4.8E-9 T 29-03-2018 AM354_RS13635 e54f14f6db80c1a853299972d12f004f 613 Gene3D G3DSA:1.10.10.10 548 606 1.0E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS13635 e54f14f6db80c1a853299972d12f004f 613 SUPERFAMILY SSF50447 175 293 1.1E-22 T 29-03-2018 IPR009000 Translation protein, beta-barrel domain AM354_RS13635 e54f14f6db80c1a853299972d12f004f 613 PRINTS PR00315 GTP-binding elongation factor signature 54 64 1.3E-7 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS13635 e54f14f6db80c1a853299972d12f004f 613 PRINTS PR00315 GTP-binding elongation factor signature 70 81 1.3E-7 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS13635 e54f14f6db80c1a853299972d12f004f 613 PRINTS PR00315 GTP-binding elongation factor signature 2 15 1.3E-7 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS13635 e54f14f6db80c1a853299972d12f004f 613 PRINTS PR00315 GTP-binding elongation factor signature 107 116 1.3E-7 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS13635 e54f14f6db80c1a853299972d12f004f 613 SUPERFAMILY SSF46785 415 483 7.75E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS13635 e54f14f6db80c1a853299972d12f004f 613 SUPERFAMILY SSF46785 553 607 4.58E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS13635 e54f14f6db80c1a853299972d12f004f 613 Pfam PF00009 Elongation factor Tu GTP binding domain 2 159 1.4E-30 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS13635 e54f14f6db80c1a853299972d12f004f 613 Gene3D G3DSA:3.40.50.300 50 164 4.3E-20 T 29-03-2018 AM354_RS13635 e54f14f6db80c1a853299972d12f004f 613 SUPERFAMILY SSF50465 275 350 1.98E-8 T 29-03-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal AM354_RS13635 e54f14f6db80c1a853299972d12f004f 613 SUPERFAMILY SSF52540 2 162 1.52E-40 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS13635 e54f14f6db80c1a853299972d12f004f 613 Gene3D G3DSA:2.40.30.10 171 280 1.1E-21 T 29-03-2018 AM354_RS13635 e54f14f6db80c1a853299972d12f004f 613 Gene3D G3DSA:1.10.10.10 417 480 7.0E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS13635 e54f14f6db80c1a853299972d12f004f 613 Gene3D G3DSA:2.40.30.10 281 334 5.1E-7 T 29-03-2018 AM354_RS13635 e54f14f6db80c1a853299972d12f004f 613 SUPERFAMILY SSF46785 488 546 2.15E-5 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS13635 e54f14f6db80c1a853299972d12f004f 613 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 26 41 - T 29-03-2018 IPR031157 Tr-type G domain, conserved site AM354_RS13635 e54f14f6db80c1a853299972d12f004f 613 Gene3D G3DSA:1.10.10.10 489 545 2.5E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS13635 e54f14f6db80c1a853299972d12f004f 613 Pfam PF09106 Elongation factor SelB, winged helix 424 480 2.6E-16 T 29-03-2018 IPR015190 Translation elongation factor SelB, winged helix, type 2 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 AM354_RS13635 e54f14f6db80c1a853299972d12f004f 613 Pfam PF09107 Elongation factor SelB, winged helix 560 605 3.7E-19 T 29-03-2018 IPR015191 Translation elongation factor SelB, winged helix, type 3 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 AM354_RS13635 e54f14f6db80c1a853299972d12f004f 613 TIGRFAM TIGR00475 selB: selenocysteine-specific translation elongation factor 1 607 1.1E-212 T 29-03-2018 IPR004535 Translation elongation factor, selenocysteine-specific GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 AM354_RS18690 9e79e0df103f9c302499917212b30050 569 ProSitePatterns PS01047 Heavy-metal-associated domain. 11 40 - T 29-03-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 AM354_RS18690 9e79e0df103f9c302499917212b30050 569 PIRSF PIRSF000350 4 569 4.1E-263 T 29-03-2018 AM354_RS18690 9e79e0df103f9c302499917212b30050 569 Gene3D G3DSA:3.30.70.100 4 73 2.4E-18 T 29-03-2018 AM354_RS18690 9e79e0df103f9c302499917212b30050 569 TIGRFAM TIGR02053 MerA: mercury(II) reductase 108 569 6.0E-179 T 29-03-2018 IPR021179 Mercury(II) reductase GO:0016152|GO:0016491|GO:0045340|GO:0050660|GO:0050661|GO:0050787|GO:0055114 AM354_RS18690 9e79e0df103f9c302499917212b30050 569 SUPERFAMILY SSF51905 324 465 1.81E-51 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS18690 9e79e0df103f9c302499917212b30050 569 SUPERFAMILY SSF51905 216 297 1.81E-51 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS18690 9e79e0df103f9c302499917212b30050 569 SUPERFAMILY SSF51905 108 157 1.81E-51 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS18690 9e79e0df103f9c302499917212b30050 569 SUPERFAMILY SSF55008 3 72 2.23E-16 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AM354_RS18690 9e79e0df103f9c302499917212b30050 569 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 445 551 6.7E-30 T 29-03-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AM354_RS18690 9e79e0df103f9c302499917212b30050 569 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 108 426 8.7E-65 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS18690 9e79e0df103f9c302499917212b30050 569 Gene3D G3DSA:3.50.50.60 265 312 4.8E-9 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS18690 9e79e0df103f9c302499917212b30050 569 PRINTS PR00945 Mercuric reductase class II signature 280 297 3.0E-81 T 29-03-2018 AM354_RS18690 9e79e0df103f9c302499917212b30050 569 PRINTS PR00945 Mercuric reductase class II signature 18 28 3.0E-81 T 29-03-2018 AM354_RS18690 9e79e0df103f9c302499917212b30050 569 PRINTS PR00945 Mercuric reductase class II signature 118 136 3.0E-81 T 29-03-2018 AM354_RS18690 9e79e0df103f9c302499917212b30050 569 PRINTS PR00945 Mercuric reductase class II signature 542 561 3.0E-81 T 29-03-2018 AM354_RS18690 9e79e0df103f9c302499917212b30050 569 PRINTS PR00945 Mercuric reductase class II signature 153 172 3.0E-81 T 29-03-2018 AM354_RS18690 9e79e0df103f9c302499917212b30050 569 PRINTS PR00945 Mercuric reductase class II signature 300 315 3.0E-81 T 29-03-2018 AM354_RS18690 9e79e0df103f9c302499917212b30050 569 PRINTS PR00945 Mercuric reductase class II signature 245 262 3.0E-81 T 29-03-2018 AM354_RS18690 9e79e0df103f9c302499917212b30050 569 PRINTS PR00945 Mercuric reductase class II signature 477 497 3.0E-81 T 29-03-2018 AM354_RS18690 9e79e0df103f9c302499917212b30050 569 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 141 151 - T 29-03-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 AM354_RS18690 9e79e0df103f9c302499917212b30050 569 Gene3D G3DSA:3.50.50.60 104 264 1.5E-28 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS18690 9e79e0df103f9c302499917212b30050 569 Gene3D G3DSA:3.50.50.60 313 443 2.2E-21 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS18690 9e79e0df103f9c302499917212b30050 569 SUPERFAMILY SSF55424 443 567 1.25E-34 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AM354_RS18690 9e79e0df103f9c302499917212b30050 569 Gene3D G3DSA:3.30.390.30 444 569 3.9E-36 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AM354_RS18690 9e79e0df103f9c302499917212b30050 569 Pfam PF00403 Heavy-metal-associated domain 10 66 1.7E-11 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AM354_RS21765 33a7335755a6eee6391572ec793c16ba 182 PIRSF PIRSF038321 2 182 2.2E-88 T 29-03-2018 IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor GO:0009401|GO:0016021 AM354_RS21765 33a7335755a6eee6391572ec793c16ba 182 Pfam PF03608 PTS system enzyme II sorbitol-specific factor 5 170 4.9E-76 T 29-03-2018 IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor GO:0009401|GO:0016021 AM354_RS21765 33a7335755a6eee6391572ec793c16ba 182 TIGRFAM TIGR00821 EII-GUT: PTS system, glucitol/sorbitol-specific, IIC component 1 181 2.3E-108 T 29-03-2018 IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor GO:0009401|GO:0016021 AM354_RS24605 f461b12639a9cf087fe8621a5eb2f9ce 491 Pfam PF00171 Aldehyde dehydrogenase family 25 483 1.5E-169 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM354_RS24605 f461b12639a9cf087fe8621a5eb2f9ce 491 Gene3D G3DSA:3.40.605.10 3 275 4.7E-96 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM354_RS24605 f461b12639a9cf087fe8621a5eb2f9ce 491 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 37 482 4.3E-217 T 29-03-2018 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 AM354_RS24605 f461b12639a9cf087fe8621a5eb2f9ce 491 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 288 299 - T 29-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AM354_RS24605 f461b12639a9cf087fe8621a5eb2f9ce 491 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 260 267 - T 29-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AM354_RS24605 f461b12639a9cf087fe8621a5eb2f9ce 491 SUPERFAMILY SSF53720 10 487 3.14E-170 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM354_RS24605 f461b12639a9cf087fe8621a5eb2f9ce 491 Gene3D G3DSA:3.40.309.10 276 454 3.4E-75 T 29-03-2018 AM354_RS08030 de4a817479a70f2410557ac0b1cbf82f 588 SUPERFAMILY SSF56425 236 356 4.64E-42 T 29-03-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM354_RS08030 de4a817479a70f2410557ac0b1cbf82f 588 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 43 52 - T 29-03-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM354_RS08030 de4a817479a70f2410557ac0b1cbf82f 588 Gene3D G3DSA:1.20.58.100 431 540 1.4E-35 T 29-03-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM354_RS08030 de4a817479a70f2410557ac0b1cbf82f 588 SUPERFAMILY SSF46977 452 588 9.81E-46 T 29-03-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM354_RS08030 de4a817479a70f2410557ac0b1cbf82f 588 Pfam PF02910 Fumarate reductase flavoprotein C-term 460 588 5.9E-35 T 29-03-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM354_RS08030 de4a817479a70f2410557ac0b1cbf82f 588 Pfam PF00890 FAD binding domain 9 405 4.0E-118 T 29-03-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM354_RS08030 de4a817479a70f2410557ac0b1cbf82f 588 PIRSF PIRSF000171 1 579 2.6E-47 T 29-03-2018 AM354_RS08030 de4a817479a70f2410557ac0b1cbf82f 588 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 368 390 3.9E-5 T 29-03-2018 AM354_RS08030 de4a817479a70f2410557ac0b1cbf82f 588 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 3.9E-5 T 29-03-2018 AM354_RS08030 de4a817479a70f2410557ac0b1cbf82f 588 Gene3D G3DSA:3.50.50.60 289 428 3.6E-17 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS08030 de4a817479a70f2410557ac0b1cbf82f 588 Gene3D G3DSA:3.50.50.60 3 288 4.2E-48 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS08030 de4a817479a70f2410557ac0b1cbf82f 588 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 6 588 2.9E-276 T 29-03-2018 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM354_RS08030 de4a817479a70f2410557ac0b1cbf82f 588 SUPERFAMILY SSF51905 4 259 2.14E-75 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS08030 de4a817479a70f2410557ac0b1cbf82f 588 SUPERFAMILY SSF51905 359 441 2.14E-75 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS08030 de4a817479a70f2410557ac0b1cbf82f 588 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 9 588 1.6E-242 T 29-03-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM354_RS08030 de4a817479a70f2410557ac0b1cbf82f 588 Gene3D G3DSA:4.10.80.40 541 588 1.2E-11 T 29-03-2018 AM354_RS08170 0b822ea8b0e27ea7639e5a523cbad514 179 PIRSF PIRSF038996 1 176 1.7E-68 T 29-03-2018 IPR010086 Flavodoxin, long chain GO:0010181 AM354_RS08170 0b822ea8b0e27ea7639e5a523cbad514 179 Gene3D G3DSA:3.40.50.360 4 174 2.0E-38 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS08170 0b822ea8b0e27ea7639e5a523cbad514 179 TIGRFAM TIGR01752 flav_long: flavodoxin 4 172 1.3E-73 T 29-03-2018 IPR010086 Flavodoxin, long chain GO:0010181 AM354_RS08170 0b822ea8b0e27ea7639e5a523cbad514 179 Pfam PF00258 Flavodoxin 6 164 1.1E-32 T 29-03-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 AM354_RS08170 0b822ea8b0e27ea7639e5a523cbad514 179 ProSitePatterns PS00201 Flavodoxin signature. 6 22 - T 29-03-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 AM354_RS08170 0b822ea8b0e27ea7639e5a523cbad514 179 SUPERFAMILY SSF52218 4 173 1.4E-51 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS20625 41e5b953bbc46d734350912b37907354 150 Pfam PF00583 Acetyltransferase (GNAT) family 43 129 4.8E-9 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS20625 41e5b953bbc46d734350912b37907354 150 Gene3D G3DSA:3.40.630.30 3 149 1.2E-16 T 29-03-2018 AM354_RS20625 41e5b953bbc46d734350912b37907354 150 SUPERFAMILY SSF55729 3 137 5.65E-19 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS16705 aaf7f8c7c804d8b8775d3e6da4d4ec78 162 PIRSF PIRSF018472 1 162 6.5E-57 T 29-03-2018 IPR026034 Cell shape-determining protein MreD, proteobacterial type AM354_RS16705 aaf7f8c7c804d8b8775d3e6da4d4ec78 162 Pfam PF04093 rod shape-determining protein MreD 5 154 8.7E-44 T 29-03-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 AM354_RS16705 aaf7f8c7c804d8b8775d3e6da4d4ec78 162 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 9 154 3.5E-42 T 29-03-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 AM354_RS16790 1500610fe7be6a8091e1533a049ac26f 182 Hamap MF_00765 UPF0307 protein YjgA [yjgA]. 15 179 23.839 T 29-03-2018 IPR006839 Ribosome-associated, YjgA AM354_RS16790 1500610fe7be6a8091e1533a049ac26f 182 SUPERFAMILY SSF158710 36 179 7.98E-52 T 29-03-2018 IPR023153 PSPTO4464-like domain AM354_RS16790 1500610fe7be6a8091e1533a049ac26f 182 Pfam PF04751 Protein of unknown function (DUF615) 25 175 1.6E-56 T 29-03-2018 IPR006839 Ribosome-associated, YjgA AM354_RS16790 1500610fe7be6a8091e1533a049ac26f 182 Gene3D G3DSA:1.10.60.30 110 182 2.4E-29 T 29-03-2018 AM354_RS16790 1500610fe7be6a8091e1533a049ac26f 182 Gene3D G3DSA:1.10.60.30 37 105 1.3E-24 T 29-03-2018 AM354_RS16790 1500610fe7be6a8091e1533a049ac26f 182 PIRSF PIRSF016183 9 182 4.5E-72 T 29-03-2018 IPR006839 Ribosome-associated, YjgA AM354_RS24795 f491389065f524f5000450a2aab43c7c 209 Gene3D G3DSA:1.10.10.10 107 197 3.3E-8 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS24795 f491389065f524f5000450a2aab43c7c 209 Pfam PF00196 Bacterial regulatory proteins, luxR family 139 193 1.6E-17 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS24795 f491389065f524f5000450a2aab43c7c 209 ProSitePatterns PS00622 LuxR-type HTH domain signature. 154 181 - T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS24795 f491389065f524f5000450a2aab43c7c 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 140 154 1.2E-7 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS24795 f491389065f524f5000450a2aab43c7c 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 182 1.2E-7 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS24795 f491389065f524f5000450a2aab43c7c 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 170 1.2E-7 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS24795 f491389065f524f5000450a2aab43c7c 209 SUPERFAMILY SSF46894 132 188 4.42E-10 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS24795 f491389065f524f5000450a2aab43c7c 209 Hamap MF_00982 Transcriptional regulatory protein RcsA [rcsA]. 1 209 50.698 T 29-03-2018 IPR030866 Transcriptional regulatory protein RcsA GO:0006355 AM354_RS24795 f491389065f524f5000450a2aab43c7c 209 SMART SM00421 137 194 3.9E-9 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS18965 721e36960263c836227d86a9a87218e8 865 SUPERFAMILY SSF52016 162 370 9.03E-73 T 29-03-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel AM354_RS18965 721e36960263c836227d86a9a87218e8 865 Pfam PF00330 Aconitase family (aconitate hydratase) 472 818 1.3E-38 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM354_RS18965 721e36960263c836227d86a9a87218e8 865 Pfam PF06434 Aconitate hydratase 2 N-terminus 168 382 4.2E-98 T 29-03-2018 IPR015929 Aconitase B, swivel GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 AM354_RS18965 721e36960263c836227d86a9a87218e8 865 SUPERFAMILY SSF53732 380 859 3.01E-150 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM354_RS18965 721e36960263c836227d86a9a87218e8 865 ProSitePatterns PS01244 Aconitase family signature 2. 761 774 - T 29-03-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AM354_RS18965 721e36960263c836227d86a9a87218e8 865 Gene3D G3DSA:3.20.19.10 162 363 3.1E-35 T 29-03-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel AM354_RS18965 721e36960263c836227d86a9a87218e8 865 PIRSF PIRSF036687 1 859 0.0 T 29-03-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 AM354_RS18965 721e36960263c836227d86a9a87218e8 865 Gene3D G3DSA:3.30.499.10 402 520 4.6E-10 T 29-03-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 AM354_RS18965 721e36960263c836227d86a9a87218e8 865 ProSitePatterns PS00450 Aconitase family signature 1. 702 719 - T 29-03-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AM354_RS18965 721e36960263c836227d86a9a87218e8 865 SUPERFAMILY SSF74778 2 160 9.15E-69 T 29-03-2018 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 AM354_RS18965 721e36960263c836227d86a9a87218e8 865 TIGRFAM TIGR00117 acnB: aconitate hydratase 2 1 854 0.0 T 29-03-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 AM354_RS18965 721e36960263c836227d86a9a87218e8 865 Gene3D G3DSA:3.40.1060.10 521 682 7.2E-27 T 29-03-2018 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33 AM354_RS18965 721e36960263c836227d86a9a87218e8 865 Gene3D G3DSA:3.30.499.10 683 865 1.2E-53 T 29-03-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 AM354_RS18965 721e36960263c836227d86a9a87218e8 865 Pfam PF11791 Aconitate B N-terminal domain 4 156 1.2E-67 T 29-03-2018 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 AM354_RS03010 19d90bdbd7fc989e445c40608fd75bcb 217 PIRSF PIRSF000190 2 217 6.7E-82 T 29-03-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AM354_RS03010 19d90bdbd7fc989e445c40608fd75bcb 217 SUPERFAMILY SSF50475 20 217 8.23E-67 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 AM354_RS03010 19d90bdbd7fc989e445c40608fd75bcb 217 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 15 217 37.983 T 29-03-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AM354_RS03010 19d90bdbd7fc989e445c40608fd75bcb 217 Gene3D G3DSA:2.30.110.10 16 217 1.8E-69 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 AM354_RS03010 19d90bdbd7fc989e445c40608fd75bcb 217 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 39 121 3.9E-23 T 29-03-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AM354_RS03010 19d90bdbd7fc989e445c40608fd75bcb 217 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 4 217 5.8E-94 T 29-03-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AM354_RS03010 19d90bdbd7fc989e445c40608fd75bcb 217 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 177 217 3.6E-19 T 29-03-2018 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AM354_RS03010 19d90bdbd7fc989e445c40608fd75bcb 217 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 187 200 - T 29-03-2018 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AM354_RS26170 8f45419981ae35f23d08e8a4d2883da1 221 SUPERFAMILY SSF46689 143 188 5.38E-9 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS26170 8f45419981ae35f23d08e8a4d2883da1 221 Pfam PF00239 Resolvase, N terminal domain 7 140 2.5E-44 T 29-03-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AM354_RS26170 8f45419981ae35f23d08e8a4d2883da1 221 Gene3D G3DSA:1.10.260.40 175 212 6.6E-5 T 29-03-2018 AM354_RS26170 8f45419981ae35f23d08e8a4d2883da1 221 Gene3D G3DSA:1.20.5.40 110 128 4.3E-17 T 29-03-2018 AM354_RS26170 8f45419981ae35f23d08e8a4d2883da1 221 Pfam PF02796 Helix-turn-helix domain of resolvase 143 185 1.5E-6 T 29-03-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 AM354_RS26170 8f45419981ae35f23d08e8a4d2883da1 221 SMART SM00857 6 141 1.8E-58 T 29-03-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AM354_RS26170 8f45419981ae35f23d08e8a4d2883da1 221 Gene3D G3DSA:3.40.50.1390 5 109 1.3E-33 T 29-03-2018 AM354_RS26170 8f45419981ae35f23d08e8a4d2883da1 221 SUPERFAMILY SSF53041 6 140 1.44E-43 T 29-03-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AM354_RS26170 8f45419981ae35f23d08e8a4d2883da1 221 Gene3D G3DSA:1.10.10.60 129 174 2.1E-10 T 29-03-2018 AM354_RS26170 8f45419981ae35f23d08e8a4d2883da1 221 ProSitePatterns PS00397 Site-specific recombinases active site. 9 17 - T 29-03-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 245 822 5.5E-192 T 29-03-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 713 732 2.3E-29 T 29-03-2018 AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 514 528 2.3E-29 T 29-03-2018 AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 638 649 2.3E-29 T 29-03-2018 AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 660 670 2.3E-29 T 29-03-2018 AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 362 376 2.3E-29 T 29-03-2018 AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 736 748 2.3E-29 T 29-03-2018 AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 ProSitePatterns PS01047 Heavy-metal-associated domain. 87 116 - T 29-03-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 Gene3D G3DSA:3.40.50.1000 641 779 3.8E-46 T 29-03-2018 IPR023214 HAD-like domain AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 284 792 6.3E-94 T 29-03-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 Pfam PF00403 Heavy-metal-associated domain 18 77 5.2E-14 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 Pfam PF00403 Heavy-metal-associated domain 85 145 2.9E-14 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 227 823 1.2E-177 T 29-03-2018 AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 84 144 1.5E-10 T 29-03-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 17 78 2.1E-11 T 29-03-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 SUPERFAMILY SSF81653 315 412 1.11E-28 T 29-03-2018 IPR008250 P-type ATPase, A domain Reactome: R-HSA-936837 AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 Gene3D G3DSA:3.30.70.100 14 79 8.9E-21 T 29-03-2018 AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 Gene3D G3DSA:1.20.1110.10 276 528 1.2E-48 T 29-03-2018 AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 Pfam PF00702 haloacid dehalogenase-like hydrolase 512 727 4.6E-46 T 29-03-2018 AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 SUPERFAMILY SSF55008 81 150 3.01E-21 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 Gene3D G3DSA:3.30.70.100 80 168 3.1E-22 T 29-03-2018 AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 ProSitePatterns PS01047 Heavy-metal-associated domain. 20 49 - T 29-03-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 SUPERFAMILY SSF81665 264 316 3.66E-13 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 SUPERFAMILY SSF81665 413 508 3.66E-13 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 SUPERFAMILY SSF81665 762 805 3.66E-13 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 SUPERFAMILY SSF55008 10 79 4.19E-19 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 Gene3D G3DSA:3.40.1110.10 529 640 1.6E-33 T 29-03-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 PRINTS PR00943 Copper-transporting ATPase signature 126 146 2.2E-9 T 29-03-2018 AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 PRINTS PR00943 Copper-transporting ATPase signature 747 761 2.2E-9 T 29-03-2018 AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 PRINTS PR00943 Copper-transporting ATPase signature 435 449 2.2E-9 T 29-03-2018 AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 PRINTS PR00943 Copper-transporting ATPase signature 690 707 2.2E-9 T 29-03-2018 AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 PRINTS PR00943 Copper-transporting ATPase signature 282 301 2.2E-9 T 29-03-2018 AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 PRINTS PR00943 Copper-transporting ATPase signature 786 800 2.2E-9 T 29-03-2018 AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 Pfam PF00122 E1-E2 ATPase 313 493 3.3E-57 T 29-03-2018 AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 516 522 - T 29-03-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 SUPERFAMILY SSF56784 571 820 1.12E-62 T 29-03-2018 IPR023214 HAD-like domain AM354_RS01950 75911a1222cedc587fec6f39d54f6bd9 851 SUPERFAMILY SSF56784 512 532 1.12E-62 T 29-03-2018 IPR023214 HAD-like domain AM354_RS19965 1ef4caa8b923d9ac6e0e4b25850f4481 72 Gene3D G3DSA:2.30.30.100 21 71 4.6E-25 T 29-03-2018 AM354_RS19965 1ef4caa8b923d9ac6e0e4b25850f4481 72 SUPERFAMILY SSF50182 21 71 1.58E-18 T 29-03-2018 IPR010920 LSM domain AM354_RS19965 1ef4caa8b923d9ac6e0e4b25850f4481 72 Pfam PF06004 Bacterial protein of unknown function (DUF903) 23 71 2.1E-24 T 29-03-2018 IPR010305 Protein of unknown function DUF903 AM354_RS03315 f60b88a595592e695078a5aedcde9d94 337 Pfam PF10437 Bacterial lipoate protein ligase C-terminus 249 332 2.1E-17 T 29-03-2018 IPR019491 Lipoate protein ligase, C-terminal KEGG: 00785+6.3.1.20 AM354_RS03315 f60b88a595592e695078a5aedcde9d94 337 Gene3D G3DSA:3.30.390.50 249 336 8.4E-21 T 29-03-2018 AM354_RS03315 f60b88a595592e695078a5aedcde9d94 337 Gene3D G3DSA:3.30.930.10 2 248 7.5E-72 T 29-03-2018 AM354_RS03315 f60b88a595592e695078a5aedcde9d94 337 SUPERFAMILY SSF82649 247 336 3.71E-24 T 29-03-2018 AM354_RS03315 f60b88a595592e695078a5aedcde9d94 337 SUPERFAMILY SSF55681 4 246 9.11E-78 T 29-03-2018 AM354_RS03315 f60b88a595592e695078a5aedcde9d94 337 Pfam PF03099 Biotin/lipoate A/B protein ligase family 49 157 7.9E-8 T 29-03-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 AM354_RS03315 f60b88a595592e695078a5aedcde9d94 337 Hamap MF_01602 Lipoate-protein ligase A [lplA]. 1 337 56.653 T 29-03-2018 IPR023741 Lipoate-protein ligase A GO:0016979|GO:0018055 KEGG: 00785+6.3.1.20 AM354_RS03315 f60b88a595592e695078a5aedcde9d94 337 TIGRFAM TIGR00545 lipoyltrans: lipoyltransferase and lipoate-protein ligase 4 327 2.1E-122 T 29-03-2018 IPR004562 Lipoyltransferase/lipoate-protein ligase GO:0009249 KEGG: 00785+6.3.1.20|Reactome: R-HSA-389661 AM354_RS25705 02760a657f31194554035e73acab4c89 247 Gene3D G3DSA:3.90.550.10 1 241 1.2E-42 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS25705 02760a657f31194554035e73acab4c89 247 Pfam PF00535 Glycosyl transferase family 2 5 152 7.9E-34 T 29-03-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AM354_RS25705 02760a657f31194554035e73acab4c89 247 SUPERFAMILY SSF53448 3 222 9.09E-54 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS06880 a9bafe6817416c922601bf5cd7259040 209 Pfam PF04299 Putative FMN-binding domain 1 167 2.7E-59 T 29-03-2018 IPR007396 Transcriptional regulator PAI 2-type AM354_RS06880 a9bafe6817416c922601bf5cd7259040 209 PIRSF PIRSF010372 1 208 5.9E-65 T 29-03-2018 IPR007396 Transcriptional regulator PAI 2-type AM354_RS06880 a9bafe6817416c922601bf5cd7259040 209 Gene3D G3DSA:2.30.110.10 1 208 6.0E-64 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 AM354_RS06880 a9bafe6817416c922601bf5cd7259040 209 SUPERFAMILY SSF50475 11 192 1.57E-37 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 AM354_RS09290 40185d05c3765a228467d0104e8131ff 468 PIRSF PIRSF006060 1 466 4.4E-79 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM354_RS09290 40185d05c3765a228467d0104e8131ff 468 ProSitePatterns PS00218 Amino acid permeases signature. 47 77 - T 29-03-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 AM354_RS09290 40185d05c3765a228467d0104e8131ff 468 Pfam PF00324 Amino acid permease 22 458 3.7E-110 T 29-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 AM354_RS03855 752a617a4f0c40bcfa4283a67b379430 147 SUPERFAMILY SSF74653 60 146 1.37E-17 T 29-03-2018 AM354_RS03855 752a617a4f0c40bcfa4283a67b379430 147 Pfam PF06519 TolA C-terminal 58 144 7.3E-25 T 29-03-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0006810|GO:0016020 AM354_RS03855 752a617a4f0c40bcfa4283a67b379430 147 Gene3D G3DSA:3.30.1150.10 71 141 6.2E-16 T 29-03-2018 AM354_RS03855 752a617a4f0c40bcfa4283a67b379430 147 TIGRFAM TIGR02794 tolA_full: protein TolA 40 146 2.7E-21 T 29-03-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0006810|GO:0016020 AM354_RS15720 54e087d7d18b531f8a8fa84b015dd974 270 SUPERFAMILY SSF53335 5 268 4.15E-72 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS15720 54e087d7d18b531f8a8fa84b015dd974 270 PIRSF PIRSF000398 1 270 1.2E-65 T 29-03-2018 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 AM354_RS15720 54e087d7d18b531f8a8fa84b015dd974 270 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 10 252 7.0E-77 T 29-03-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 AM354_RS15720 54e087d7d18b531f8a8fa84b015dd974 270 TIGRFAM TIGR00571 dam: DNA adenine methylase 5 268 4.0E-97 T 29-03-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 AM354_RS15720 54e087d7d18b531f8a8fa84b015dd974 270 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 178 184 - T 29-03-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AM354_RS15720 54e087d7d18b531f8a8fa84b015dd974 270 Gene3D G3DSA:3.40.50.150 146 268 8.4E-14 T 29-03-2018 AM354_RS15720 54e087d7d18b531f8a8fa84b015dd974 270 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 175 187 5.3E-19 T 29-03-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 AM354_RS15720 54e087d7d18b531f8a8fa84b015dd974 270 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 10 26 5.3E-19 T 29-03-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 AM354_RS15720 54e087d7d18b531f8a8fa84b015dd974 270 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 31 45 5.3E-19 T 29-03-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 AM354_RS15720 54e087d7d18b531f8a8fa84b015dd974 270 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 50 63 5.3E-19 T 29-03-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 AM354_RS15720 54e087d7d18b531f8a8fa84b015dd974 270 Gene3D G3DSA:1.10.1020.10 57 145 7.0E-34 T 29-03-2018 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 AM354_RS00115 dadc53c05cb1940e06a316e004ffa4f0 213 Pfam PF01081 KDPG and KHG aldolase 9 203 5.0E-88 T 29-03-2018 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 AM354_RS00115 dadc53c05cb1940e06a316e004ffa4f0 213 SUPERFAMILY SSF51569 3 208 5.49E-69 T 29-03-2018 AM354_RS00115 dadc53c05cb1940e06a316e004ffa4f0 213 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 9 209 1.3E-85 T 29-03-2018 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 AM354_RS00115 dadc53c05cb1940e06a316e004ffa4f0 213 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 128 141 - T 29-03-2018 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 AM354_RS00115 dadc53c05cb1940e06a316e004ffa4f0 213 Gene3D G3DSA:3.20.20.70 1 213 8.4E-31 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS00115 dadc53c05cb1940e06a316e004ffa4f0 213 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 40 49 - T 29-03-2018 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 AM354_RS22570 10dcd558b0453d050c10ac3451545010 409 Gene3D G3DSA:1.20.1250.20 209 405 1.2E-20 T 29-03-2018 AM354_RS22570 10dcd558b0453d050c10ac3451545010 409 Pfam PF07690 Major Facilitator Superfamily 219 398 6.0E-17 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS22570 10dcd558b0453d050c10ac3451545010 409 SUPERFAMILY SSF103473 1 389 3.66E-44 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS22570 10dcd558b0453d050c10ac3451545010 409 Gene3D G3DSA:1.20.1250.20 5 188 6.1E-18 T 29-03-2018 AM354_RS10705 3e06a817c13524aa95a867391184a9b0 564 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 201 336 2.1E-43 T 29-03-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AM354_RS10705 3e06a817c13524aa95a867391184a9b0 564 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 392 540 1.4E-49 T 29-03-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AM354_RS10705 3e06a817c13524aa95a867391184a9b0 564 Gene3D G3DSA:3.40.50.970 351 552 2.0E-50 T 29-03-2018 AM354_RS10705 3e06a817c13524aa95a867391184a9b0 564 SUPERFAMILY SSF52518 12 190 3.91E-60 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS10705 3e06a817c13524aa95a867391184a9b0 564 Gene3D G3DSA:3.40.50.1220 196 350 1.1E-49 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM354_RS10705 3e06a817c13524aa95a867391184a9b0 564 Gene3D G3DSA:3.40.50.970 7 195 2.6E-62 T 29-03-2018 AM354_RS10705 3e06a817c13524aa95a867391184a9b0 564 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 429 448 - T 29-03-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 AM354_RS10705 3e06a817c13524aa95a867391184a9b0 564 SUPERFAMILY SSF52467 196 360 7.53E-56 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM354_RS10705 3e06a817c13524aa95a867391184a9b0 564 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 14 180 1.9E-58 T 29-03-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AM354_RS10705 3e06a817c13524aa95a867391184a9b0 564 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 14 563 5.8E-204 T 29-03-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 AM354_RS10705 3e06a817c13524aa95a867391184a9b0 564 SUPERFAMILY SSF52518 367 562 2.43E-64 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS04695 bbf3bcb9a222e2db291ee64af3e90411 118 SMART SM00342 21 104 4.2E-29 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS04695 bbf3bcb9a222e2db291ee64af3e90411 118 Gene3D G3DSA:1.10.10.60 59 113 4.0E-12 T 29-03-2018 AM354_RS04695 bbf3bcb9a222e2db291ee64af3e90411 118 Gene3D G3DSA:1.10.10.60 3 58 4.1E-14 T 29-03-2018 AM354_RS04695 bbf3bcb9a222e2db291ee64af3e90411 118 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 55 100 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM354_RS04695 bbf3bcb9a222e2db291ee64af3e90411 118 Pfam PF12833 Helix-turn-helix domain 27 105 1.5E-22 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS04695 bbf3bcb9a222e2db291ee64af3e90411 118 SUPERFAMILY SSF46689 58 107 2.37E-12 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS04695 bbf3bcb9a222e2db291ee64af3e90411 118 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 73 88 2.9E-7 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM354_RS04695 bbf3bcb9a222e2db291ee64af3e90411 118 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 88 104 2.9E-7 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM354_RS04695 bbf3bcb9a222e2db291ee64af3e90411 118 SUPERFAMILY SSF46689 6 55 4.87E-11 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS15780 1c46f67f0008c92ce9079410678a77f3 326 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 29-03-2018 AM354_RS15780 1c46f67f0008c92ce9079410678a77f3 326 Gene3D G3DSA:3.40.50.2300 55 175 5.7E-30 T 29-03-2018 AM354_RS15780 1c46f67f0008c92ce9079410678a77f3 326 SUPERFAMILY SSF47413 1 59 1.38E-18 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS15780 1c46f67f0008c92ce9079410678a77f3 326 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 5.5E-6 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS15780 1c46f67f0008c92ce9079410678a77f3 326 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 5.5E-6 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS15780 1c46f67f0008c92ce9079410678a77f3 326 SUPERFAMILY SSF53822 61 322 1.99E-67 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS15780 1c46f67f0008c92ce9079410678a77f3 326 Gene3D G3DSA:1.10.260.40 2 54 1.8E-24 T 29-03-2018 AM354_RS15780 1c46f67f0008c92ce9079410678a77f3 326 Gene3D G3DSA:3.40.50.2300 176 305 1.5E-41 T 29-03-2018 AM354_RS15780 1c46f67f0008c92ce9079410678a77f3 326 Pfam PF13377 Periplasmic binding protein-like domain 168 321 8.5E-35 T 29-03-2018 AM354_RS15780 1c46f67f0008c92ce9079410678a77f3 326 SMART SM00354 1 71 2.9E-30 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS15780 1c46f67f0008c92ce9079410678a77f3 326 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 1.7E-19 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS24350 1db7217c7667265c9c2d6b80fc1ce96d 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 67 2.0E-17 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS24350 1db7217c7667265c9c2d6b80fc1ce96d 303 SUPERFAMILY SSF53850 94 300 2.17E-39 T 29-03-2018 AM354_RS24350 1db7217c7667265c9c2d6b80fc1ce96d 303 Pfam PF03466 LysR substrate binding domain 93 298 1.6E-36 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS24350 1db7217c7667265c9c2d6b80fc1ce96d 303 Gene3D G3DSA:3.40.190.10 94 181 3.0E-9 T 29-03-2018 AM354_RS24350 1db7217c7667265c9c2d6b80fc1ce96d 303 Gene3D G3DSA:3.40.190.10 182 270 1.7E-23 T 29-03-2018 AM354_RS24350 1db7217c7667265c9c2d6b80fc1ce96d 303 SUPERFAMILY SSF46785 6 88 7.71E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS24350 1db7217c7667265c9c2d6b80fc1ce96d 303 Gene3D G3DSA:1.10.10.10 3 89 8.1E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS19500 af53e614a08b6dc4e56a0f678e2b8bb4 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 5.7E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS19500 af53e614a08b6dc4e56a0f678e2b8bb4 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 5.7E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS19500 af53e614a08b6dc4e56a0f678e2b8bb4 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 5.7E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS19500 af53e614a08b6dc4e56a0f678e2b8bb4 248 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 9 247 1.1E-57 T 29-03-2018 AM354_RS19500 af53e614a08b6dc4e56a0f678e2b8bb4 248 SUPERFAMILY SSF51735 3 247 1.76E-74 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS19500 af53e614a08b6dc4e56a0f678e2b8bb4 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 1.1E-39 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS19500 af53e614a08b6dc4e56a0f678e2b8bb4 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 1.1E-39 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS19500 af53e614a08b6dc4e56a0f678e2b8bb4 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 1.1E-39 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS19500 af53e614a08b6dc4e56a0f678e2b8bb4 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 1.1E-39 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS19500 af53e614a08b6dc4e56a0f678e2b8bb4 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 1.1E-39 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS19500 af53e614a08b6dc4e56a0f678e2b8bb4 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 1.1E-39 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS19500 af53e614a08b6dc4e56a0f678e2b8bb4 248 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM354_RS19500 af53e614a08b6dc4e56a0f678e2b8bb4 248 Gene3D G3DSA:3.40.50.720 1 34 5.5E-7 T 29-03-2018 AM354_RS19500 af53e614a08b6dc4e56a0f678e2b8bb4 248 Gene3D G3DSA:3.40.50.720 35 248 1.1E-61 T 29-03-2018 AM354_RS21450 67ae400629d7c914975397e8c047e1b2 345 SUPERFAMILY SSF53335 279 332 3.32E-30 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS21450 67ae400629d7c914975397e8c047e1b2 345 SUPERFAMILY SSF53335 52 216 3.32E-30 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS21450 67ae400629d7c914975397e8c047e1b2 345 Pfam PF00145 C-5 cytosine-specific DNA methylase 78 177 7.8E-11 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS21450 67ae400629d7c914975397e8c047e1b2 345 Gene3D G3DSA:3.40.50.150 2 191 8.4E-24 T 29-03-2018 AM354_RS05545 029770f5a05656302169c8d85e6fa130 872 Gene3D G3DSA:1.25.50.10 547 871 3.0E-127 T 29-03-2018 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal AM354_RS05545 029770f5a05656302169c8d85e6fa130 872 SUPERFAMILY SSF55486 204 450 2.93E-74 T 29-03-2018 AM354_RS05545 029770f5a05656302169c8d85e6fa130 872 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 258 268 1.5E-7 T 29-03-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AM354_RS05545 029770f5a05656302169c8d85e6fa130 872 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 176 191 1.5E-7 T 29-03-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AM354_RS05545 029770f5a05656302169c8d85e6fa130 872 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 313 325 1.5E-7 T 29-03-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AM354_RS05545 029770f5a05656302169c8d85e6fa130 872 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 294 309 1.5E-7 T 29-03-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AM354_RS05545 029770f5a05656302169c8d85e6fa130 872 Gene3D G3DSA:1.10.390.10 280 443 1.8E-51 T 29-03-2018 AM354_RS05545 029770f5a05656302169c8d85e6fa130 872 TIGRFAM TIGR02414 pepN_proteo: aminopeptidase N 12 870 0.0 T 29-03-2018 IPR012779 Peptidase M1, alanyl aminopeptidase GO:0008270 AM354_RS05545 029770f5a05656302169c8d85e6fa130 872 Pfam PF01433 Peptidase family M1 domain 208 439 1.6E-59 T 29-03-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AM354_RS05545 029770f5a05656302169c8d85e6fa130 872 Gene3D G3DSA:2.60.40.1730 15 194 5.5E-33 T 29-03-2018 AM354_RS05545 029770f5a05656302169c8d85e6fa130 872 Pfam PF17432 Domain of unknown function (DUF3458_C) ARM repeats 548 870 1.6E-123 T 29-03-2018 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal AM354_RS05545 029770f5a05656302169c8d85e6fa130 872 SUPERFAMILY SSF63737 1 193 4.05E-48 T 29-03-2018 AM354_RS05545 029770f5a05656302169c8d85e6fa130 872 Pfam PF11940 Domain of unknown function (DUF3458) Ig-like fold 444 544 1.5E-34 T 29-03-2018 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold AM354_RS01255 9d816259f539ae4cac6456e0b959e3c9 523 Pfam PF00989 PAS fold 82 167 2.0E-6 T 29-03-2018 IPR013767 PAS fold GO:0006355 AM354_RS01255 9d816259f539ae4cac6456e0b959e3c9 523 SMART SM00382 226 370 9.8E-8 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS01255 9d816259f539ae4cac6456e0b959e3c9 523 Gene3D G3DSA:1.10.10.60 460 514 6.9E-7 T 29-03-2018 AM354_RS01255 9d816259f539ae4cac6456e0b959e3c9 523 TIGRFAM TIGR04381 HTH_TypR: TyrR family helix-turn-helix domain 466 513 1.1E-27 T 29-03-2018 IPR030828 TyrR family, helix-turn-helix domain GO:0003677 AM354_RS01255 9d816259f539ae4cac6456e0b959e3c9 523 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 419 428 - T 29-03-2018 IPR025944 Sigma-54 interaction domain, conserved site AM354_RS01255 9d816259f539ae4cac6456e0b959e3c9 523 SMART SM00091 80 146 2.7E-7 T 29-03-2018 IPR000014 PAS domain AM354_RS01255 9d816259f539ae4cac6456e0b959e3c9 523 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 230 243 - T 29-03-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AM354_RS01255 9d816259f539ae4cac6456e0b959e3c9 523 Gene3D G3DSA:3.30.450.20 79 181 1.8E-9 T 29-03-2018 AM354_RS01255 9d816259f539ae4cac6456e0b959e3c9 523 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 292 307 - T 29-03-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AM354_RS01255 9d816259f539ae4cac6456e0b959e3c9 523 Gene3D G3DSA:3.30.70.260 1 78 6.3E-9 T 29-03-2018 AM354_RS01255 9d816259f539ae4cac6456e0b959e3c9 523 SUPERFAMILY SSF52540 206 447 1.54E-63 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS01255 9d816259f539ae4cac6456e0b959e3c9 523 Pfam PF00158 Sigma-54 interaction domain 207 372 1.1E-62 T 29-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AM354_RS01255 9d816259f539ae4cac6456e0b959e3c9 523 Gene3D G3DSA:1.10.8.60 379 459 1.8E-18 T 29-03-2018 AM354_RS01255 9d816259f539ae4cac6456e0b959e3c9 523 SUPERFAMILY SSF55021 2 69 4.06E-5 T 29-03-2018 AM354_RS01255 9d816259f539ae4cac6456e0b959e3c9 523 SUPERFAMILY SSF55785 77 175 8.03E-9 T 29-03-2018 IPR000014 PAS domain AM354_RS01255 9d816259f539ae4cac6456e0b959e3c9 523 Gene3D G3DSA:3.40.50.300 201 378 1.6E-23 T 29-03-2018 AM354_RS01255 9d816259f539ae4cac6456e0b959e3c9 523 SUPERFAMILY SSF46689 459 513 7.62E-10 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS22270 38a0da06e6700cf27a75e80b8fa0a6d2 154 Pfam PF11143 Protein of unknown function (DUF2919) 8 148 8.5E-47 T 29-03-2018 IPR021318 Protein of unknown function DUF2919 AM354_RS17285 c98741169e2253da47175d62c6b31b1a 119 SUPERFAMILY SSF55620 1 115 4.67E-37 T 29-03-2018 AM354_RS17285 c98741169e2253da47175d62c6b31b1a 119 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 4 114 5.4E-27 T 29-03-2018 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AM354_RS17285 c98741169e2253da47175d62c6b31b1a 119 SMART SM00905 4 114 7.0E-48 T 29-03-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AM354_RS17285 c98741169e2253da47175d62c6b31b1a 119 TIGRFAM TIGR00526 folB_dom: FolB domain 1 116 1.7E-40 T 29-03-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AM354_RS17285 c98741169e2253da47175d62c6b31b1a 119 Gene3D G3DSA:3.30.1130.10 1 119 1.5E-34 T 29-03-2018 AM354_RS17285 c98741169e2253da47175d62c6b31b1a 119 Pfam PF02152 Dihydroneopterin aldolase 4 113 2.3E-31 T 29-03-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AM354_RS12155 18a3a93397d996f7647ad413c076abb3 517 Gene3D G3DSA:1.10.287.950 319 517 3.3E-46 T 29-03-2018 AM354_RS12155 18a3a93397d996f7647ad413c076abb3 517 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 329 483 8.5E-53 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM354_RS12155 18a3a93397d996f7647ad413c076abb3 517 SUPERFAMILY SSF58104 236 517 1.57E-69 T 29-03-2018 AM354_RS12155 18a3a93397d996f7647ad413c076abb3 517 SMART SM00283 269 516 7.4E-88 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM354_RS12155 18a3a93397d996f7647ad413c076abb3 517 SUPERFAMILY SSF47170 28 174 6.8E-12 T 29-03-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 AM354_RS12155 18a3a93397d996f7647ad413c076abb3 517 Pfam PF02203 Tar ligand binding domain homologue 1 174 2.5E-21 T 29-03-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 AM354_RS12155 18a3a93397d996f7647ad413c076abb3 517 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 367 394 5.6E-54 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM354_RS12155 18a3a93397d996f7647ad413c076abb3 517 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 396 425 5.6E-54 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM354_RS12155 18a3a93397d996f7647ad413c076abb3 517 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 444 473 5.6E-54 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM354_RS12155 18a3a93397d996f7647ad413c076abb3 517 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 15 40 5.6E-54 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM354_RS12155 18a3a93397d996f7647ad413c076abb3 517 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 290 319 5.6E-54 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM354_RS12155 18a3a93397d996f7647ad413c076abb3 517 Pfam PF00672 HAMP domain 218 263 2.7E-7 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM354_RS12155 18a3a93397d996f7647ad413c076abb3 517 Gene3D G3DSA:1.20.120.30 23 188 4.9E-28 T 29-03-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain AM354_RS12155 18a3a93397d996f7647ad413c076abb3 517 SMART SM00304 216 268 3.0E-7 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM354_RS06850 bc4df76f40161a7682c281b30f040a4f 336 Gene3D G3DSA:3.40.50.150 59 323 2.6E-52 T 29-03-2018 AM354_RS06850 bc4df76f40161a7682c281b30f040a4f 336 SUPERFAMILY SSF53335 63 323 2.41E-27 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS06850 bc4df76f40161a7682c281b30f040a4f 336 Hamap MF_01848 Ribosomal RNA large subunit methyltransferase F [rlmF]. 26 325 54.549 T 29-03-2018 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 AM354_RS06850 bc4df76f40161a7682c281b30f040a4f 336 PIRSF PIRSF029038 15 335 8.5E-154 T 29-03-2018 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 AM354_RS06850 bc4df76f40161a7682c281b30f040a4f 336 Pfam PF05971 Protein of unknown function (DUF890) 25 323 6.4E-128 T 29-03-2018 IPR010286 Ribosomal RNA large subunit methyltransferase F-like GO:0008168 AM354_RS06095 44a8f6104909537d5a3ab3a4afc3e7b5 165 Pfam PF00419 Fimbrial protein 31 164 2.0E-17 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS06095 44a8f6104909537d5a3ab3a4afc3e7b5 165 SUPERFAMILY SSF49401 40 164 4.57E-20 T 29-03-2018 IPR008966 Adhesion domain AM354_RS06095 44a8f6104909537d5a3ab3a4afc3e7b5 165 Gene3D G3DSA:2.60.40.1090 29 164 9.4E-15 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS05155 b78fadac69f22ee4f1a7aa14bd21a669 422 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 288 7.2E-24 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS05155 b78fadac69f22ee4f1a7aa14bd21a669 422 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 262 284 1.3E-16 T 29-03-2018 AM354_RS05155 b78fadac69f22ee4f1a7aa14bd21a669 422 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 144 162 1.3E-16 T 29-03-2018 AM354_RS05155 b78fadac69f22ee4f1a7aa14bd21a669 422 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 100 118 1.3E-16 T 29-03-2018 AM354_RS05155 b78fadac69f22ee4f1a7aa14bd21a669 422 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 1.3E-16 T 29-03-2018 AM354_RS05155 b78fadac69f22ee4f1a7aa14bd21a669 422 Gene3D G3DSA:3.40.50.720 145 390 4.9E-15 T 29-03-2018 AM354_RS05155 b78fadac69f22ee4f1a7aa14bd21a669 422 PIRSF PIRSF037495 1 418 1.6E-106 T 29-03-2018 IPR017224 Opine oxidase, subunit A/hydrogen cyanide synthase, subunit B GO:0016491|GO:0055114 AM354_RS05155 b78fadac69f22ee4f1a7aa14bd21a669 422 Gene3D G3DSA:3.50.50.60 1 144 3.9E-21 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS05155 b78fadac69f22ee4f1a7aa14bd21a669 422 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 101 109 1.6E-10 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM354_RS05155 b78fadac69f22ee4f1a7aa14bd21a669 422 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 7 29 1.6E-10 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM354_RS05155 b78fadac69f22ee4f1a7aa14bd21a669 422 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 140 164 1.6E-10 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM354_RS05155 b78fadac69f22ee4f1a7aa14bd21a669 422 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 272 290 1.6E-10 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM354_RS05155 b78fadac69f22ee4f1a7aa14bd21a669 422 SUPERFAMILY SSF51905 2 306 8.47E-36 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS14835 0d61adf338edb70a03718d212bc57b2f 339 Pfam PF03631 Virulence factor BrkB 66 324 8.2E-46 T 29-03-2018 IPR017039 Virulence factor BrkB AM354_RS14835 0d61adf338edb70a03718d212bc57b2f 339 PIRSF PIRSF035875 38 337 5.7E-22 T 29-03-2018 IPR017039 Virulence factor BrkB AM354_RS14835 0d61adf338edb70a03718d212bc57b2f 339 TIGRFAM TIGR00766 TIGR00766: inner membrane protein YhjD 52 326 2.5E-124 T 29-03-2018 IPR005274 Inner membrane protein YhjD AM354_RS04870 d28d36dcd7d9c59017450ca8a2d49fd7 1125 Gene3D G3DSA:2.40.50.140 33 124 1.8E-31 T 29-03-2018 AM354_RS04870 d28d36dcd7d9c59017450ca8a2d49fd7 1125 Pfam PF10150 Ribonuclease E/G family 121 391 7.5E-92 T 29-03-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 AM354_RS04870 d28d36dcd7d9c59017450ca8a2d49fd7 1125 SMART SM00316 37 119 2.8E-12 T 29-03-2018 IPR022967 RNA-binding domain, S1 AM354_RS04870 d28d36dcd7d9c59017450ca8a2d49fd7 1125 Pfam PF00575 S1 RNA binding domain 36 118 3.3E-16 T 29-03-2018 IPR003029 S1 domain GO:0003676 AM354_RS04870 d28d36dcd7d9c59017450ca8a2d49fd7 1125 SUPERFAMILY SSF50249 40 124 1.24E-20 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS04870 d28d36dcd7d9c59017450ca8a2d49fd7 1125 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 425 5.0E-170 T 29-03-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 AM354_RS04870 d28d36dcd7d9c59017450ca8a2d49fd7 1125 Hamap MF_00970 Ribonuclease E [rne]. 1 1110 38.852 T 29-03-2018 IPR028878 Ribonuclease E GO:0006396|GO:0008995 AM354_RS04870 d28d36dcd7d9c59017450ca8a2d49fd7 1125 Pfam PF12111 Polyribonucleotide phosphorylase C terminal 1087 1121 5.5E-19 T 29-03-2018 IPR021968 Polyribonucleotide phosphorylase C-terminal AM354_RS08800 89eaf9b73d2ea04c2be4a37f40da3af9 623 PRINTS PR00775 90kDa heat shock protein signature 192 210 8.6E-64 T 29-03-2018 IPR020575 Heat shock protein Hsp90, N-terminal AM354_RS08800 89eaf9b73d2ea04c2be4a37f40da3af9 623 PRINTS PR00775 90kDa heat shock protein signature 7 27 8.6E-64 T 29-03-2018 IPR020575 Heat shock protein Hsp90, N-terminal AM354_RS08800 89eaf9b73d2ea04c2be4a37f40da3af9 623 PRINTS PR00775 90kDa heat shock protein signature 28 50 8.6E-64 T 29-03-2018 IPR020575 Heat shock protein Hsp90, N-terminal AM354_RS08800 89eaf9b73d2ea04c2be4a37f40da3af9 623 PRINTS PR00775 90kDa heat shock protein signature 77 94 8.6E-64 T 29-03-2018 IPR020575 Heat shock protein Hsp90, N-terminal AM354_RS08800 89eaf9b73d2ea04c2be4a37f40da3af9 623 PRINTS PR00775 90kDa heat shock protein signature 95 112 8.6E-64 T 29-03-2018 IPR020575 Heat shock protein Hsp90, N-terminal AM354_RS08800 89eaf9b73d2ea04c2be4a37f40da3af9 623 PRINTS PR00775 90kDa heat shock protein signature 122 144 8.6E-64 T 29-03-2018 IPR020575 Heat shock protein Hsp90, N-terminal AM354_RS08800 89eaf9b73d2ea04c2be4a37f40da3af9 623 PRINTS PR00775 90kDa heat shock protein signature 174 191 8.6E-64 T 29-03-2018 IPR020575 Heat shock protein Hsp90, N-terminal AM354_RS08800 89eaf9b73d2ea04c2be4a37f40da3af9 623 PIRSF PIRSF002583 1 623 2.1E-218 T 29-03-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 AM354_RS08800 89eaf9b73d2ea04c2be4a37f40da3af9 623 SUPERFAMILY SSF55874 6 215 4.32E-66 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS08800 89eaf9b73d2ea04c2be4a37f40da3af9 623 Hamap MF_00505 Chaperone protein HtpG [htpG]. 4 622 32.819 T 29-03-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 AM354_RS08800 89eaf9b73d2ea04c2be4a37f40da3af9 623 SMART SM00387 29 186 9.4E-12 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS08800 89eaf9b73d2ea04c2be4a37f40da3af9 623 SUPERFAMILY SSF54211 230 485 1.21E-101 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM354_RS08800 89eaf9b73d2ea04c2be4a37f40da3af9 623 Gene3D G3DSA:3.30.565.10 31 224 2.0E-52 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS08800 89eaf9b73d2ea04c2be4a37f40da3af9 623 Pfam PF00183 Hsp90 protein 214 622 4.3E-126 T 29-03-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 AM354_RS08800 89eaf9b73d2ea04c2be4a37f40da3af9 623 SUPERFAMILY SSF110942 509 621 8.37E-35 T 29-03-2018 AM354_RS08800 89eaf9b73d2ea04c2be4a37f40da3af9 623 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 27 36 - T 29-03-2018 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0006950|GO:0051082 AM354_RS08800 89eaf9b73d2ea04c2be4a37f40da3af9 623 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 29 184 1.2E-13 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS09585 44dad3e5a6f49122526d60d612766021 499 Gene3D G3DSA:3.40.309.10 288 481 1.5E-63 T 29-03-2018 AM354_RS09585 44dad3e5a6f49122526d60d612766021 499 Pfam PF00171 Aldehyde dehydrogenase family 28 495 1.6E-165 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM354_RS09585 44dad3e5a6f49122526d60d612766021 499 SUPERFAMILY SSF53720 14 498 1.83E-164 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM354_RS09585 44dad3e5a6f49122526d60d612766021 499 Gene3D G3DSA:3.40.605.10 9 287 1.2E-104 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM354_RS09585 44dad3e5a6f49122526d60d612766021 499 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 299 310 - T 29-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AM354_RS09585 44dad3e5a6f49122526d60d612766021 499 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 271 278 - T 29-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AM354_RS17200 bc37453d2096c1fbe06acbb8af20e766 379 Hamap MF_01859 Ribosomal RNA large subunit methyltransferase G [rlmG]. 1 374 51.479 T 29-03-2018 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD GO:0005737|GO:0008990|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM354_RS17200 bc37453d2096c1fbe06acbb8af20e766 379 Gene3D G3DSA:3.40.50.150 185 379 4.7E-30 T 29-03-2018 AM354_RS17200 bc37453d2096c1fbe06acbb8af20e766 379 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 303 309 - T 29-03-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AM354_RS17200 bc37453d2096c1fbe06acbb8af20e766 379 Pfam PF05175 Methyltransferase small domain 201 371 7.8E-56 T 29-03-2018 IPR007848 Methyltransferase small domain GO:0008168 AM354_RS17200 bc37453d2096c1fbe06acbb8af20e766 379 SUPERFAMILY SSF53335 192 374 2.39E-25 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS17200 bc37453d2096c1fbe06acbb8af20e766 379 PIRSF PIRSF037565 1 375 5.0E-169 T 29-03-2018 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD GO:0005737|GO:0008990|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM354_RS14005 a16bebd509653bc4610841ff158603e5 177 Pfam PF00213 ATP synthase delta (OSCP) subunit 7 174 8.1E-51 T 29-03-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS14005 a16bebd509653bc4610841ff158603e5 177 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 137 156 - T 29-03-2018 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS14005 a16bebd509653bc4610841ff158603e5 177 SUPERFAMILY SSF47928 3 104 9.02E-28 T 29-03-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS14005 a16bebd509653bc4610841ff158603e5 177 PRINTS PR00125 ATP synthase delta subunit signature 7 26 9.2E-29 T 29-03-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS14005 a16bebd509653bc4610841ff158603e5 177 PRINTS PR00125 ATP synthase delta subunit signature 135 150 9.2E-29 T 29-03-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS14005 a16bebd509653bc4610841ff158603e5 177 PRINTS PR00125 ATP synthase delta subunit signature 150 168 9.2E-29 T 29-03-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS14005 a16bebd509653bc4610841ff158603e5 177 PRINTS PR00125 ATP synthase delta subunit signature 85 99 9.2E-29 T 29-03-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS14005 a16bebd509653bc4610841ff158603e5 177 PRINTS PR00125 ATP synthase delta subunit signature 74 85 9.2E-29 T 29-03-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS14005 a16bebd509653bc4610841ff158603e5 177 Hamap MF_01416 ATP synthase subunit delta [atpD]. 3 177 18.853 T 29-03-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS14005 a16bebd509653bc4610841ff158603e5 177 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 7 175 3.0E-64 T 29-03-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS14005 a16bebd509653bc4610841ff158603e5 177 Gene3D G3DSA:1.10.520.20 2 106 7.6E-28 T 29-03-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS09475 b5f7eb9c2824821d86c1a4418da6e4eb 261 SMART SM00530 15 87 6.0E-8 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM354_RS09475 b5f7eb9c2824821d86c1a4418da6e4eb 261 SUPERFAMILY SSF47413 35 86 2.73E-8 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS09475 b5f7eb9c2824821d86c1a4418da6e4eb 261 Pfam PF13560 Helix-turn-helix domain 11 90 4.3E-18 T 29-03-2018 AM354_RS09475 b5f7eb9c2824821d86c1a4418da6e4eb 261 Gene3D G3DSA:1.10.260.40 3 110 9.9E-16 T 29-03-2018 AM354_RS19550 3d23c157e270ce6ec6f3a2ec44783b43 505 SMART SM00382 39 229 5.4E-14 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS19550 3d23c157e270ce6ec6f3a2ec44783b43 505 SMART SM00382 289 473 0.44 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS19550 3d23c157e270ce6ec6f3a2ec44783b43 505 Gene3D G3DSA:3.40.50.300 263 505 8.5E-34 T 29-03-2018 AM354_RS19550 3d23c157e270ce6ec6f3a2ec44783b43 505 SUPERFAMILY SSF52540 13 241 3.28E-55 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS19550 3d23c157e270ce6ec6f3a2ec44783b43 505 ProSitePatterns PS00211 ABC transporters family signature. 408 422 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS19550 3d23c157e270ce6ec6f3a2ec44783b43 505 Pfam PF00005 ABC transporter 30 181 1.4E-27 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS19550 3d23c157e270ce6ec6f3a2ec44783b43 505 Pfam PF00005 ABC transporter 281 435 1.2E-21 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS19550 3d23c157e270ce6ec6f3a2ec44783b43 505 Gene3D G3DSA:3.40.50.300 11 262 1.0E-54 T 29-03-2018 AM354_RS19550 3d23c157e270ce6ec6f3a2ec44783b43 505 SUPERFAMILY SSF52540 280 495 9.06E-42 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS23150 d46831ad8002856c20f46b5fd407dcf9 912 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 88 124 1.1E-14 T 29-03-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23150 d46831ad8002856c20f46b5fd407dcf9 912 SUPERFAMILY SSF54292 1 77 1.07E-18 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM354_RS23150 d46831ad8002856c20f46b5fd407dcf9 912 Gene3D G3DSA:2.40.40.20 828 906 1.1E-12 T 29-03-2018 AM354_RS23150 d46831ad8002856c20f46b5fd407dcf9 912 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 150 160 - T 29-03-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23150 d46831ad8002856c20f46b5fd407dcf9 912 Gene3D G3DSA:2.20.25.90 214 279 1.2E-9 T 29-03-2018 AM354_RS23150 d46831ad8002856c20f46b5fd407dcf9 912 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 103 115 - T 29-03-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23150 d46831ad8002856c20f46b5fd407dcf9 912 Pfam PF00384 Molybdopterin oxidoreductase 555 638 1.0E-6 T 29-03-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23150 d46831ad8002856c20f46b5fd407dcf9 912 Gene3D G3DSA:3.10.20.30 1 164 1.7E-10 T 29-03-2018 IPR012675 Beta-grasp domain AM354_RS23150 d46831ad8002856c20f46b5fd407dcf9 912 SMART SM00929 88 128 1.9E-19 T 29-03-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23150 d46831ad8002856c20f46b5fd407dcf9 912 Gene3D G3DSA:3.40.50.740 460 647 3.3E-20 T 29-03-2018 AM354_RS23150 d46831ad8002856c20f46b5fd407dcf9 912 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 31 48 - T 29-03-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23150 d46831ad8002856c20f46b5fd407dcf9 912 Gene3D G3DSA:3.40.50.740 280 441 4.2E-10 T 29-03-2018 AM354_RS23150 d46831ad8002856c20f46b5fd407dcf9 912 SUPERFAMILY SSF50692 819 895 1.49E-13 T 29-03-2018 IPR009010 Aspartate decarboxylase-like domain AM354_RS23150 d46831ad8002856c20f46b5fd407dcf9 912 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 221 275 1.3E-9 T 29-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23150 d46831ad8002856c20f46b5fd407dcf9 912 SUPERFAMILY SSF53706 219 693 1.81E-78 T 29-03-2018 AM354_RS23150 d46831ad8002856c20f46b5fd407dcf9 912 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 4 660 1.1E-203 T 29-03-2018 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23150 d46831ad8002856c20f46b5fd407dcf9 912 SMART SM00926 221 275 1.0E-8 T 29-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23150 d46831ad8002856c20f46b5fd407dcf9 912 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 3 78 1.7E-11 T 29-03-2018 AM354_RS23150 d46831ad8002856c20f46b5fd407dcf9 912 SUPERFAMILY SSF54862 82 213 1.8E-33 T 29-03-2018 AM354_RS23150 d46831ad8002856c20f46b5fd407dcf9 912 Pfam PF01568 Molydopterin dinucleotide binding domain 830 894 4.2E-7 T 29-03-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 AM354_RS08490 67e0c177c6871b07e6d27db4a8097df2 317 Gene3D G3DSA:1.10.10.10 7 88 1.4E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS08490 67e0c177c6871b07e6d27db4a8097df2 317 Gene3D G3DSA:3.40.190.10 184 270 1.2E-18 T 29-03-2018 AM354_RS08490 67e0c177c6871b07e6d27db4a8097df2 317 Pfam PF03466 LysR substrate binding domain 93 299 1.3E-34 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS08490 67e0c177c6871b07e6d27db4a8097df2 317 SUPERFAMILY SSF46785 5 116 2.25E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS08490 67e0c177c6871b07e6d27db4a8097df2 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 3.7E-14 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS08490 67e0c177c6871b07e6d27db4a8097df2 317 SUPERFAMILY SSF53850 93 303 6.52E-38 T 29-03-2018 AM354_RS08490 67e0c177c6871b07e6d27db4a8097df2 317 Gene3D G3DSA:3.40.190.10 96 183 2.9E-12 T 29-03-2018 AM354_RS10730 b1313deb37b7bae73d500c0e31ca6f98 216 SUPERFAMILY SSF55120 6 213 7.84E-62 T 29-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS10730 b1313deb37b7bae73d500c0e31ca6f98 216 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 7 213 2.0E-57 T 29-03-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS10730 b1313deb37b7bae73d500c0e31ca6f98 216 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 57 71 - T 29-03-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS10730 b1313deb37b7bae73d500c0e31ca6f98 216 Gene3D G3DSA:3.30.2350.10 10 215 1.1E-60 T 29-03-2018 AM354_RS10730 b1313deb37b7bae73d500c0e31ca6f98 216 Pfam PF00849 RNA pseudouridylate synthase 19 166 7.7E-28 T 29-03-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS12555 d37a6026467a3d79dc144671b1c73685 766 Gene3D G3DSA:2.40.170.20 190 766 6.6E-85 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS12555 d37a6026467a3d79dc144671b1c73685 766 Pfam PF00593 TonB dependent receptor 293 763 5.1E-56 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS12555 d37a6026467a3d79dc144671b1c73685 766 Pfam PF07715 TonB-dependent Receptor Plug Domain 65 179 2.2E-29 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS12555 d37a6026467a3d79dc144671b1c73685 766 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 749 766 - T 29-03-2018 IPR010917 TonB-dependent receptor, conserved site AM354_RS12555 d37a6026467a3d79dc144671b1c73685 766 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 57 - T 29-03-2018 IPR010916 TonB box, conserved site AM354_RS12555 d37a6026467a3d79dc144671b1c73685 766 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 66 766 1.8E-118 T 29-03-2018 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 AM354_RS12555 d37a6026467a3d79dc144671b1c73685 766 Gene3D G3DSA:2.170.130.10 41 186 2.8E-35 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS12555 d37a6026467a3d79dc144671b1c73685 766 SUPERFAMILY SSF56935 50 766 2.38E-133 T 29-03-2018 AM354_RS07365 2e982ff0180786c50bc4cefea2ada67e 443 Gene3D G3DSA:1.10.760.10 22 149 1.5E-15 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS07365 2e982ff0180786c50bc4cefea2ada67e 443 Pfam PF00034 Cytochrome c 305 388 1.1E-9 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS07365 2e982ff0180786c50bc4cefea2ada67e 443 Pfam PF00034 Cytochrome c 34 133 1.6E-5 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS07365 2e982ff0180786c50bc4cefea2ada67e 443 SUPERFAMILY SSF46626 26 134 1.78E-17 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS07365 2e982ff0180786c50bc4cefea2ada67e 443 SUPERFAMILY SSF46626 178 286 2.94E-19 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS07365 2e982ff0180786c50bc4cefea2ada67e 443 SUPERFAMILY SSF46626 305 408 1.49E-20 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS07365 2e982ff0180786c50bc4cefea2ada67e 443 Gene3D G3DSA:1.10.760.10 293 416 8.0E-18 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS07365 2e982ff0180786c50bc4cefea2ada67e 443 PIRSF PIRSF000018 6 424 2.3E-140 T 29-03-2018 IPR014353 Membrane-bound alcohol dehydrogenase, cytochrome c subunit GO:0005506|GO:0016020|GO:0016614|GO:0020037 AM354_RS07365 2e982ff0180786c50bc4cefea2ada67e 443 Gene3D G3DSA:1.10.760.10 177 292 1.6E-16 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS06190 cacec2b96b044863351851acf8d4c85d 355 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 319 331 - T 29-03-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 AM354_RS06190 cacec2b96b044863351851acf8d4c85d 355 Pfam PF13242 HAD-hyrolase-like 103 152 7.5E-5 T 29-03-2018 AM354_RS06190 cacec2b96b044863351851acf8d4c85d 355 Gene3D G3DSA:3.40.50.1000 4 171 1.2E-21 T 29-03-2018 IPR023214 HAD-like domain AM354_RS06190 cacec2b96b044863351851acf8d4c85d 355 SUPERFAMILY SSF54211 252 342 6.45E-32 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM354_RS06190 cacec2b96b044863351851acf8d4c85d 355 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 4 144 3.4E-44 T 29-03-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 AM354_RS06190 cacec2b96b044863351851acf8d4c85d 355 Gene3D G3DSA:3.30.230.40 255 355 1.5E-31 T 29-03-2018 AM354_RS06190 cacec2b96b044863351851acf8d4c85d 355 SUPERFAMILY SSF56784 3 157 1.65E-38 T 29-03-2018 IPR023214 HAD-like domain AM354_RS06190 cacec2b96b044863351851acf8d4c85d 355 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 4 149 5.2E-23 T 29-03-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 AM354_RS06190 cacec2b96b044863351851acf8d4c85d 355 TIGRFAM TIGR01261 hisB_Nterm: histidinol-phosphatase 3 162 3.6E-75 T 29-03-2018 IPR005954 Histidinol-phosphatase GO:0000105|GO:0004401|GO:0004424|GO:0005737 KEGG: 00340+4.2.1.19+3.1.3.15 AM354_RS06190 cacec2b96b044863351851acf8d4c85d 355 Hamap MF_01022 Histidine biosynthesis bifunctional protein HisB [hisB]. 2 355 50.692 T 29-03-2018 IPR020566 Histidine biosynthesis bifunctional protein HisB GO:0000105|GO:0004401|GO:0004424 KEGG: 00340+4.2.1.19+3.1.3.15 AM354_RS06190 cacec2b96b044863351851acf8d4c85d 355 SUPERFAMILY SSF54211 167 251 1.19E-31 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM354_RS06190 cacec2b96b044863351851acf8d4c85d 355 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 226 239 - T 29-03-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 AM354_RS06190 cacec2b96b044863351851acf8d4c85d 355 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 196 337 4.0E-65 T 29-03-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 AM354_RS06190 cacec2b96b044863351851acf8d4c85d 355 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 167 355 37.298 T 29-03-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 AM354_RS06190 cacec2b96b044863351851acf8d4c85d 355 Gene3D G3DSA:3.30.230.40 172 253 2.6E-33 T 29-03-2018 AM354_RS08845 9071aa3d1f3cf8ca6cdb5e43edf6ea58 224 SUPERFAMILY SSF48498 85 202 2.62E-13 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AM354_RS08845 9071aa3d1f3cf8ca6cdb5e43edf6ea58 224 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 58 - T 29-03-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AM354_RS08845 9071aa3d1f3cf8ca6cdb5e43edf6ea58 224 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 1.0E-19 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS08845 9071aa3d1f3cf8ca6cdb5e43edf6ea58 224 Gene3D G3DSA:1.10.357.10 1 211 1.0E-39 T 29-03-2018 AM354_RS08845 9071aa3d1f3cf8ca6cdb5e43edf6ea58 224 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 1.3E-11 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS08845 9071aa3d1f3cf8ca6cdb5e43edf6ea58 224 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 1.3E-11 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS08845 9071aa3d1f3cf8ca6cdb5e43edf6ea58 224 Pfam PF08361 MAATS-type transcriptional repressor, C-terminal region 84 204 8.8E-54 T 29-03-2018 IPR013572 Transcription regulator MAATS, C-terminal GO:0003677 AM354_RS08845 9071aa3d1f3cf8ca6cdb5e43edf6ea58 224 SUPERFAMILY SSF46689 2 75 1.8E-20 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS10185 0cbf88b1d1c1b772a37b6a8ceaad8287 459 Gene3D G3DSA:1.20.1250.20 200 385 1.3E-21 T 29-03-2018 AM354_RS10185 0cbf88b1d1c1b772a37b6a8ceaad8287 459 Pfam PF07690 Major Facilitator Superfamily 13 286 3.0E-18 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS10185 0cbf88b1d1c1b772a37b6a8ceaad8287 459 SUPERFAMILY SSF103473 8 374 1.7E-41 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS10185 0cbf88b1d1c1b772a37b6a8ceaad8287 459 Gene3D G3DSA:1.20.1250.20 2 187 6.1E-15 T 29-03-2018 AM354_RS02095 979679f85080c0c5fc7e9d2255dae677 314 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 25 259 1.4E-93 T 29-03-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0006779|GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM354_RS02095 979679f85080c0c5fc7e9d2255dae677 314 SUPERFAMILY SSF53790 22 260 2.75E-79 T 29-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM354_RS02095 979679f85080c0c5fc7e9d2255dae677 314 Gene3D G3DSA:3.40.1010.10 24 149 1.4E-35 T 29-03-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM354_RS02095 979679f85080c0c5fc7e9d2255dae677 314 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 30 44 - T 29-03-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM354_RS02095 979679f85080c0c5fc7e9d2255dae677 314 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 27 236 1.0E-49 T 29-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM354_RS02095 979679f85080c0c5fc7e9d2255dae677 314 Gene3D G3DSA:3.30.950.10 150 271 5.7E-41 T 29-03-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM354_RS21350 b8e9c1eaa151e4ce15a7aa1c5c9249c7 788 Gene3D G3DSA:2.60.40.1760 8 243 4.4E-40 T 29-03-2018 AM354_RS21350 b8e9c1eaa151e4ce15a7aa1c5c9249c7 788 Gene3D G3DSA:3.20.20.80 244 616 4.6E-107 T 29-03-2018 AM354_RS21350 b8e9c1eaa151e4ce15a7aa1c5c9249c7 788 SUPERFAMILY SSF51445 247 594 1.37E-69 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily AM354_RS21350 b8e9c1eaa151e4ce15a7aa1c5c9249c7 788 Pfam PF13802 Galactose mutarotase-like 146 213 1.6E-22 T 29-03-2018 IPR025887 Glycoside hydrolase family 31, N-terminal domain AM354_RS21350 b8e9c1eaa151e4ce15a7aa1c5c9249c7 788 Gene3D G3DSA:2.60.40.1180 617 679 5.2E-23 T 29-03-2018 AM354_RS21350 b8e9c1eaa151e4ce15a7aa1c5c9249c7 788 SUPERFAMILY SSF74650 2 243 4.39E-44 T 29-03-2018 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 AM354_RS21350 b8e9c1eaa151e4ce15a7aa1c5c9249c7 788 Gene3D G3DSA:2.60.40.1180 680 787 1.4E-7 T 29-03-2018 AM354_RS21350 b8e9c1eaa151e4ce15a7aa1c5c9249c7 788 SUPERFAMILY SSF51011 597 678 9.35E-19 T 29-03-2018 AM354_RS21350 b8e9c1eaa151e4ce15a7aa1c5c9249c7 788 Pfam PF01055 Glycosyl hydrolases family 31 238 682 9.1E-119 T 29-03-2018 IPR000322 Glycoside hydrolase family 31 GO:0004553|GO:0005975 AM354_RS02860 81cadc26bd333d90e269aa92be5450f7 251 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 29-03-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AM354_RS02860 81cadc26bd333d90e269aa92be5450f7 251 SMART SM00420 6 58 9.1E-15 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS02860 81cadc26bd333d90e269aa92be5450f7 251 Pfam PF00455 DeoR C terminal sensor domain 75 230 4.8E-42 T 29-03-2018 IPR014036 DeoR C-terminal sensor domain AM354_RS02860 81cadc26bd333d90e269aa92be5450f7 251 Pfam PF08220 DeoR-like helix-turn-helix domain 6 60 1.7E-16 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS02860 81cadc26bd333d90e269aa92be5450f7 251 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 8.0E-10 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS02860 81cadc26bd333d90e269aa92be5450f7 251 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 8.0E-10 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS02860 81cadc26bd333d90e269aa92be5450f7 251 SUPERFAMILY SSF100950 75 230 1.53E-27 T 29-03-2018 AM354_RS02860 81cadc26bd333d90e269aa92be5450f7 251 Gene3D G3DSA:1.10.10.10 2 74 1.8E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS02860 81cadc26bd333d90e269aa92be5450f7 251 SMART SM01134 71 232 4.6E-60 T 29-03-2018 AM354_RS02860 81cadc26bd333d90e269aa92be5450f7 251 Gene3D G3DSA:3.40.50.1360 75 236 1.1E-38 T 29-03-2018 AM354_RS02860 81cadc26bd333d90e269aa92be5450f7 251 SUPERFAMILY SSF46785 4 61 6.76E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS05505 ca657c59404cd3d20b7b25ba887d1292 369 Pfam PF03473 MOSC domain 141 263 6.3E-30 T 29-03-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 AM354_RS05505 ca657c59404cd3d20b7b25ba887d1292 369 SUPERFAMILY SSF50800 149 265 2.3E-15 T 29-03-2018 IPR011037 Pyruvate kinase-like, insert domain AM354_RS05505 ca657c59404cd3d20b7b25ba887d1292 369 SUPERFAMILY SSF50800 5 52 2.3E-15 T 29-03-2018 IPR011037 Pyruvate kinase-like, insert domain AM354_RS05505 ca657c59404cd3d20b7b25ba887d1292 369 Pfam PF03476 MOSC N-terminal beta barrel domain 4 118 2.4E-29 T 29-03-2018 IPR005303 MOSC, N-terminal beta barrel AM354_RS05505 ca657c59404cd3d20b7b25ba887d1292 369 Gene3D G3DSA:2.40.33.20 1 269 9.9E-51 T 29-03-2018 AM354_RS05505 ca657c59404cd3d20b7b25ba887d1292 369 SUPERFAMILY SSF141673 6 134 2.35E-30 T 29-03-2018 AM354_RS05505 ca657c59404cd3d20b7b25ba887d1292 369 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 324 332 - T 29-03-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AM354_RS05505 ca657c59404cd3d20b7b25ba887d1292 369 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 300 363 5.2E-13 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM354_RS05505 ca657c59404cd3d20b7b25ba887d1292 369 SUPERFAMILY SSF54292 284 368 1.02E-22 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM354_RS05505 ca657c59404cd3d20b7b25ba887d1292 369 Gene3D G3DSA:3.10.20.30 270 369 5.5E-17 T 29-03-2018 IPR012675 Beta-grasp domain AM354_RS18990 6ecb8e75269e5d1d1de19702d53ca3bc 555 SUPERFAMILY SSF49503 172 293 2.44E-28 T 29-03-2018 IPR008972 Cupredoxin AM354_RS18990 6ecb8e75269e5d1d1de19702d53ca3bc 555 ProSitePatterns PS00080 Multicopper oxidases signature 2. 536 547 - T 29-03-2018 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 AM354_RS18990 6ecb8e75269e5d1d1de19702d53ca3bc 555 Pfam PF07731 Multicopper oxidase 442 554 5.7E-26 T 29-03-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 AM354_RS18990 6ecb8e75269e5d1d1de19702d53ca3bc 555 SUPERFAMILY SSF49503 438 553 1.9E-27 T 29-03-2018 IPR008972 Cupredoxin AM354_RS18990 6ecb8e75269e5d1d1de19702d53ca3bc 555 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 28 4.5E-4 T 29-03-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal AM354_RS18990 6ecb8e75269e5d1d1de19702d53ca3bc 555 Pfam PF07732 Multicopper oxidase 60 167 1.5E-29 T 29-03-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 AM354_RS18990 6ecb8e75269e5d1d1de19702d53ca3bc 555 Gene3D G3DSA:2.60.40.420 171 337 1.2E-23 T 29-03-2018 IPR008972 Cupredoxin AM354_RS18990 6ecb8e75269e5d1d1de19702d53ca3bc 555 Gene3D G3DSA:2.60.40.420 29 170 6.7E-29 T 29-03-2018 IPR008972 Cupredoxin AM354_RS18990 6ecb8e75269e5d1d1de19702d53ca3bc 555 Pfam PF00394 Multicopper oxidase 227 298 4.9E-5 T 29-03-2018 IPR001117 Multicopper oxidase, type 1 GO:0055114 AM354_RS18990 6ecb8e75269e5d1d1de19702d53ca3bc 555 SUPERFAMILY SSF49503 33 169 1.41E-30 T 29-03-2018 IPR008972 Cupredoxin AM354_RS18990 6ecb8e75269e5d1d1de19702d53ca3bc 555 Gene3D G3DSA:2.60.40.420 436 554 2.1E-33 T 29-03-2018 IPR008972 Cupredoxin AM354_RS18990 6ecb8e75269e5d1d1de19702d53ca3bc 555 Gene3D G3DSA:2.60.40.420 346 405 0.016 T 29-03-2018 IPR008972 Cupredoxin AM354_RS01805 39640c229bdd887d6a8be73e9244241e 447 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 108 122 - T 29-03-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 AM354_RS01805 39640c229bdd887d6a8be73e9244241e 447 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 75 407 1.8E-59 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM354_RS01805 39640c229bdd887d6a8be73e9244241e 447 TIGRFAM TIGR02035 D_Ser_am_lyase: D-serine ammonia-lyase 9 438 6.2E-216 T 29-03-2018 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 AM354_RS01805 39640c229bdd887d6a8be73e9244241e 447 SUPERFAMILY SSF53686 73 438 7.27E-52 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM354_RS01805 39640c229bdd887d6a8be73e9244241e 447 Hamap MF_01030 D-serine dehydratase [dsdA]. 1 447 262.799 T 29-03-2018 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 AM354_RS01805 39640c229bdd887d6a8be73e9244241e 447 Gene3D G3DSA:3.40.50.1100 239 441 5.8E-26 T 29-03-2018 AM354_RS01805 39640c229bdd887d6a8be73e9244241e 447 Gene3D G3DSA:3.40.50.1100 115 238 1.8E-23 T 29-03-2018 AM354_RS21855 a591a95ce34f70b131dd068be606ef76 496 Gene3D G3DSA:1.10.1670.10 452 493 4.2E-15 T 29-03-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 AM354_RS21855 a591a95ce34f70b131dd068be606ef76 496 SMART SM01009 208 323 3.5E-49 T 29-03-2018 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal AM354_RS21855 a591a95ce34f70b131dd068be606ef76 496 Pfam PF02805 Metal binding domain of Ada 18 81 9.1E-29 T 29-03-2018 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 AM354_RS21855 a591a95ce34f70b131dd068be606ef76 496 SMART SM00342 110 193 1.8E-24 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS21855 a591a95ce34f70b131dd068be606ef76 496 SUPERFAMILY SSF55945 209 308 1.41E-24 T 29-03-2018 AM354_RS21855 a591a95ce34f70b131dd068be606ef76 496 SUPERFAMILY SSF46689 147 195 1.34E-9 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS21855 a591a95ce34f70b131dd068be606ef76 496 Pfam PF12833 Helix-turn-helix domain 116 193 1.3E-23 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS21855 a591a95ce34f70b131dd068be606ef76 496 Gene3D G3DSA:3.40.10.10 8 83 2.9E-23 T 29-03-2018 IPR035451 Ada-like domain AM354_RS21855 a591a95ce34f70b131dd068be606ef76 496 Gene3D G3DSA:3.30.310.20 208 310 6.4E-34 T 29-03-2018 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal AM354_RS21855 a591a95ce34f70b131dd068be606ef76 496 SUPERFAMILY SSF46689 93 143 1.79E-7 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS21855 a591a95ce34f70b131dd068be606ef76 496 Pfam PF06029 AlkA N-terminal domain 209 323 9.1E-33 T 29-03-2018 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal AM354_RS21855 a591a95ce34f70b131dd068be606ef76 496 Gene3D G3DSA:1.10.10.60 93 147 1.3E-10 T 29-03-2018 AM354_RS21855 a591a95ce34f70b131dd068be606ef76 496 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 330 420 5.3E-6 T 29-03-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AM354_RS21855 a591a95ce34f70b131dd068be606ef76 496 Gene3D G3DSA:1.10.340.30 311 451 3.7E-23 T 29-03-2018 AM354_RS21855 a591a95ce34f70b131dd068be606ef76 496 Gene3D G3DSA:1.10.10.60 148 205 3.3E-11 T 29-03-2018 AM354_RS21855 a591a95ce34f70b131dd068be606ef76 496 SUPERFAMILY SSF48150 313 487 2.09E-43 T 29-03-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 AM354_RS21855 a591a95ce34f70b131dd068be606ef76 496 SMART SM00478 333 489 6.4E-15 T 29-03-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AM354_RS21855 a591a95ce34f70b131dd068be606ef76 496 SUPERFAMILY SSF57884 11 86 2.62E-31 T 29-03-2018 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 AM354_RS11180 7857c47741eab4e2ac65f5ad4f703bba 119 SUPERFAMILY SSF54909 9 116 1.26E-27 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel AM354_RS11180 7857c47741eab4e2ac65f5ad4f703bba 119 Pfam PF05336 L-rhamnose mutarotase 10 116 4.1E-29 T 29-03-2018 IPR008000 Rhamnose/fucose mutarotase GO:0005737|GO:0016857 AM354_RS22180 80f48bfda92b6e1934fd75100c9772e0 499 SMART SM00495 453 495 3.3E-8 T 29-03-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 AM354_RS22180 80f48bfda92b6e1934fd75100c9772e0 499 Gene3D G3DSA:3.20.20.80 1 436 5.4E-91 T 29-03-2018 AM354_RS22180 80f48bfda92b6e1934fd75100c9772e0 499 SUPERFAMILY SSF51445 4 291 1.2E-88 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily AM354_RS22180 80f48bfda92b6e1934fd75100c9772e0 499 SUPERFAMILY SSF51445 379 436 1.2E-88 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily AM354_RS22180 80f48bfda92b6e1934fd75100c9772e0 499 Pfam PF00704 Glycosyl hydrolases family 18 7 408 2.7E-84 T 29-03-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 AM354_RS22180 80f48bfda92b6e1934fd75100c9772e0 499 Gene3D G3DSA:2.10.10.20 449 498 5.3E-11 T 29-03-2018 AM354_RS22180 80f48bfda92b6e1934fd75100c9772e0 499 SMART SM00636 16 408 3.0E-106 T 29-03-2018 IPR011583 Chitinase II GO:0008061 AM354_RS22180 80f48bfda92b6e1934fd75100c9772e0 499 SUPERFAMILY SSF54556 292 379 2.75E-24 T 29-03-2018 IPR029070 Chitinase insertion domain AM354_RS22180 80f48bfda92b6e1934fd75100c9772e0 499 SUPERFAMILY SSF51055 449 497 2.75E-10 T 29-03-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 AM354_RS22180 80f48bfda92b6e1934fd75100c9772e0 499 ProSitePatterns PS01095 Chitinases family 18 active site. 136 144 - T 29-03-2018 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 AM354_RS09270 0f19546d9a20ed4eb10856297d35a492 418 Gene3D G3DSA:2.30.30.60 202 252 3.2E-10 T 29-03-2018 AM354_RS09270 0f19546d9a20ed4eb10856297d35a492 418 SUPERFAMILY SSF50182 187 252 2.88E-12 T 29-03-2018 IPR010920 LSM domain AM354_RS09270 0f19546d9a20ed4eb10856297d35a492 418 Pfam PF00924 Mechanosensitive ion channel 143 397 3.3E-56 T 29-03-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 AM354_RS05600 25eb4484333096471721c2339f2decba 440 Pfam PF03882 MukF winged-helix domain 3 117 8.9E-59 T 29-03-2018 IPR033439 Chromosome partition protein MukF, winged-helix domain AM354_RS05600 25eb4484333096471721c2339f2decba 440 Pfam PF17192 MukF middle domain 121 281 1.1E-84 T 29-03-2018 IPR033440 Chromosome partition protein MukF, middle domain AM354_RS05600 25eb4484333096471721c2339f2decba 440 SUPERFAMILY SSF46785 8 118 3.9E-50 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS05600 25eb4484333096471721c2339f2decba 440 Pfam PF17193 MukF C-terminal domain 283 440 3.1E-80 T 29-03-2018 IPR033441 Chromosome partition protein MukF, C-terminal domain AM354_RS05600 25eb4484333096471721c2339f2decba 440 Hamap MF_01803 Chromosome partition protein MukF [mukF]. 1 440 55.986 T 29-03-2018 IPR005582 Chromosome partition protein MukF GO:0005509|GO:0006260|GO:0007059 AM354_RS05600 25eb4484333096471721c2339f2decba 440 PIRSF PIRSF018282 1 440 7.1E-248 T 29-03-2018 IPR005582 Chromosome partition protein MukF GO:0005509|GO:0006260|GO:0007059 AM354_RS05600 25eb4484333096471721c2339f2decba 440 SUPERFAMILY SSF140570 119 281 2.09E-76 T 29-03-2018 IPR033440 Chromosome partition protein MukF, middle domain AM354_RS05600 25eb4484333096471721c2339f2decba 440 Gene3D G3DSA:1.10.10.10 24 116 3.1E-41 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS23640 dba8500b99e345461b106241a9159a55 377 Pfam PF00381 PTS HPr component phosphorylation site 287 369 7.1E-24 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like AM354_RS23640 dba8500b99e345461b106241a9159a55 377 Gene3D G3DSA:3.30.1340.10 282 369 2.6E-25 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like AM354_RS23640 dba8500b99e345461b106241a9159a55 377 SUPERFAMILY SSF55804 148 276 2.27E-12 T 29-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 AM354_RS23640 dba8500b99e345461b106241a9159a55 377 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 297 304 - T 29-03-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site AM354_RS23640 dba8500b99e345461b106241a9159a55 377 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 47 63 - T 29-03-2018 IPR002178 PTS EIIA type-2 domain AM354_RS23640 dba8500b99e345461b106241a9159a55 377 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 326 341 - T 29-03-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site AM354_RS23640 dba8500b99e345461b106241a9159a55 377 Gene3D G3DSA:3.40.930.10 3 143 1.4E-32 T 29-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 AM354_RS23640 dba8500b99e345461b106241a9159a55 377 Gene3D G3DSA:3.40.930.10 145 278 0.0034 T 29-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 AM354_RS23640 dba8500b99e345461b106241a9159a55 377 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 286 368 3.9E-21 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like AM354_RS23640 dba8500b99e345461b106241a9159a55 377 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 4 139 4.0E-29 T 29-03-2018 IPR002178 PTS EIIA type-2 domain AM354_RS23640 dba8500b99e345461b106241a9159a55 377 SUPERFAMILY SSF55804 2 140 2.09E-39 T 29-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 AM354_RS23640 dba8500b99e345461b106241a9159a55 377 SUPERFAMILY SSF55594 287 375 5.89E-24 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like AM354_RS23640 dba8500b99e345461b106241a9159a55 377 PRINTS PR00107 Phosphocarrier protein signature 297 313 7.0E-17 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like AM354_RS23640 dba8500b99e345461b106241a9159a55 377 PRINTS PR00107 Phosphocarrier protein signature 325 340 7.0E-17 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like AM354_RS23640 dba8500b99e345461b106241a9159a55 377 PRINTS PR00107 Phosphocarrier protein signature 340 357 7.0E-17 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like AM354_RS11630 c21897dd903a1b67dae30601c5b5ec7d 321 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 203 6.6E-21 T 29-03-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AM354_RS11630 c21897dd903a1b67dae30601c5b5ec7d 321 Gene3D G3DSA:3.40.50.720 1 179 2.1E-29 T 29-03-2018 AM354_RS11630 c21897dd903a1b67dae30601c5b5ec7d 321 Gene3D G3DSA:3.90.25.10 180 284 2.1E-45 T 29-03-2018 AM354_RS11630 c21897dd903a1b67dae30601c5b5ec7d 321 SUPERFAMILY SSF51735 2 313 2.45E-47 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS13995 7994efc9a5831ff283ae016e0d282485 287 Gene3D G3DSA:1.10.287.80 240 282 1.7E-14 T 29-03-2018 AM354_RS13995 7994efc9a5831ff283ae016e0d282485 287 Gene3D G3DSA:1.10.287.80 2 41 2.9E-18 T 29-03-2018 AM354_RS13995 7994efc9a5831ff283ae016e0d282485 287 PRINTS PR00126 ATP synthase gamma subunit signature 166 183 1.8E-38 T 29-03-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS13995 7994efc9a5831ff283ae016e0d282485 287 PRINTS PR00126 ATP synthase gamma subunit signature 234 253 1.8E-38 T 29-03-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS13995 7994efc9a5831ff283ae016e0d282485 287 PRINTS PR00126 ATP synthase gamma subunit signature 265 286 1.8E-38 T 29-03-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS13995 7994efc9a5831ff283ae016e0d282485 287 PRINTS PR00126 ATP synthase gamma subunit signature 73 92 1.8E-38 T 29-03-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS13995 7994efc9a5831ff283ae016e0d282485 287 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 287 8.3E-112 T 29-03-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS13995 7994efc9a5831ff283ae016e0d282485 287 Gene3D G3DSA:3.40.1380.10 42 239 2.2E-74 T 29-03-2018 AM354_RS13995 7994efc9a5831ff283ae016e0d282485 287 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 273 286 - T 29-03-2018 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS13995 7994efc9a5831ff283ae016e0d282485 287 Pfam PF00231 ATP synthase 5 286 1.4E-96 T 29-03-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS13995 7994efc9a5831ff283ae016e0d282485 287 SUPERFAMILY SSF52943 2 287 6.54E-97 T 29-03-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS13995 7994efc9a5831ff283ae016e0d282485 287 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 287 36.369 T 29-03-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS05055 d1261610c45393a53d2e3687a499d444 401 Gene3D G3DSA:2.40.50.100 67 131 6.7E-17 T 29-03-2018 AM354_RS05055 d1261610c45393a53d2e3687a499d444 401 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 45 388 2.9E-48 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AM354_RS05055 d1261610c45393a53d2e3687a499d444 401 SUPERFAMILY SSF111369 59 248 1.44E-22 T 29-03-2018 AM354_RS05055 d1261610c45393a53d2e3687a499d444 401 Gene3D G3DSA:1.10.287.470 132 184 2.7E-6 T 29-03-2018 AM354_RS05055 d1261610c45393a53d2e3687a499d444 401 Gene3D G3DSA:2.40.50.100 185 386 1.7E-6 T 29-03-2018 AM354_RS05055 d1261610c45393a53d2e3687a499d444 401 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 56 269 1.2E-15 T 29-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AM354_RS10015 1e0dbe62c8d5586053b87d297a0142c0 243 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 25 242 1.4E-69 T 29-03-2018 IPR003730 Multi-copper polyphenol oxidoreductase AM354_RS10015 1e0dbe62c8d5586053b87d297a0142c0 243 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 20 241 1.9E-78 T 29-03-2018 IPR003730 Multi-copper polyphenol oxidoreductase AM354_RS10015 1e0dbe62c8d5586053b87d297a0142c0 243 Gene3D G3DSA:3.60.140.10 1 243 3.5E-94 T 29-03-2018 AM354_RS10015 1e0dbe62c8d5586053b87d297a0142c0 243 SUPERFAMILY SSF64438 3 242 9.16E-89 T 29-03-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic AM354_RS13805 718ec58f0b8768afbfffadf23550c272 126 Pfam PF01850 PIN domain 7 107 1.9E-12 T 29-03-2018 IPR002716 PIN domain AM354_RS13805 718ec58f0b8768afbfffadf23550c272 126 SUPERFAMILY SSF88723 4 116 2.61E-24 T 29-03-2018 IPR029060 PIN domain-like AM354_RS13805 718ec58f0b8768afbfffadf23550c272 126 Gene3D G3DSA:3.40.50.1010 1 121 2.8E-21 T 29-03-2018 IPR029060 PIN domain-like AM354_RS03685 63cda384f5271834bd23342063235d46 456 TIGRFAM TIGR02022 hutF: formiminoglutamate deiminase 2 453 4.8E-216 T 29-03-2018 IPR010252 Formiminoglutamate deiminase AM354_RS03685 63cda384f5271834bd23342063235d46 456 SUPERFAMILY SSF51556 50 374 4.68E-70 T 29-03-2018 IPR032466 Metal-dependent hydrolase AM354_RS03685 63cda384f5271834bd23342063235d46 456 SUPERFAMILY SSF51338 365 434 1.85E-8 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM354_RS03685 63cda384f5271834bd23342063235d46 456 Gene3D G3DSA:2.30.40.10 365 455 9.1E-7 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM354_RS03685 63cda384f5271834bd23342063235d46 456 Gene3D G3DSA:3.20.20.140 45 364 5.4E-42 T 29-03-2018 AM354_RS03685 63cda384f5271834bd23342063235d46 456 Pfam PF01979 Amidohydrolase family 49 429 5.2E-30 T 29-03-2018 IPR006680 Amidohydrolase-related GO:0016787 AM354_RS21980 fd17121bf2e851f0de98c58a631e3cf5 171 Gene3D G3DSA:1.20.5.620 63 98 0.046 T 29-03-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain AM354_RS21980 fd17121bf2e851f0de98c58a631e3cf5 171 Gene3D G3DSA:1.20.5.620 99 162 1.1E-5 T 29-03-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain AM354_RS21980 fd17121bf2e851f0de98c58a631e3cf5 171 SUPERFAMILY SSF58113 27 155 1.06E-6 T 29-03-2018 AM354_RS21980 fd17121bf2e851f0de98c58a631e3cf5 171 Gene3D G3DSA:1.10.287.700 1 62 3.6E-4 T 29-03-2018 AM354_RS07290 55e90af05e2c7271758f5753cb41a1c9 496 SUPERFAMILY SSF51445 7 404 4.32E-94 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily AM354_RS07290 55e90af05e2c7271758f5753cb41a1c9 496 Pfam PF00128 Alpha amylase, catalytic domain 27 369 3.5E-22 T 29-03-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AM354_RS07290 55e90af05e2c7271758f5753cb41a1c9 496 Gene3D G3DSA:2.60.40.1180 408 495 2.3E-29 T 29-03-2018 AM354_RS07290 55e90af05e2c7271758f5753cb41a1c9 496 SMART SM00642 5 403 4.3E-47 T 29-03-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AM354_RS07290 55e90af05e2c7271758f5753cb41a1c9 496 Gene3D G3DSA:3.20.20.80 5 403 2.1E-74 T 29-03-2018 AM354_RS07290 55e90af05e2c7271758f5753cb41a1c9 496 PIRSF PIRSF001021 1 495 6.4E-202 T 29-03-2018 IPR013776 Alpha-amylase, thermostable GO:0004553|GO:0005509|GO:0005975 KEGG: 00500+3.2.1.1 AM354_RS07290 55e90af05e2c7271758f5753cb41a1c9 496 SUPERFAMILY SSF51011 406 492 1.38E-26 T 29-03-2018 AM354_RS06480 b4c270b1e5176a4818bb391e038cbe92 280 Pfam PF00756 Putative esterase 26 261 1.2E-66 T 29-03-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 AM354_RS06480 b4c270b1e5176a4818bb391e038cbe92 280 Gene3D G3DSA:3.40.50.1820 1 279 6.9E-48 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS06480 b4c270b1e5176a4818bb391e038cbe92 280 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 6 278 1.2E-119 T 29-03-2018 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801|Reactome: R-HSA-156590 AM354_RS06480 b4c270b1e5176a4818bb391e038cbe92 280 SUPERFAMILY SSF53474 5 278 3.86E-90 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS13175 0765d6d1da0cb8ce3112814aa6b74005 347 Gene3D G3DSA:3.40.50.1820 31 338 8.5E-33 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS13175 0765d6d1da0cb8ce3112814aa6b74005 347 SUPERFAMILY SSF53474 15 335 1.39E-34 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS13175 0765d6d1da0cb8ce3112814aa6b74005 347 Pfam PF12146 Serine aminopeptidase, S33 55 315 1.4E-53 T 29-03-2018 IPR022742 Serine aminopeptidase, S33 AM354_RS07500 8b252d10f057f81fdef70fe2e674965b 155 Gene3D G3DSA:2.160.10.10 45 151 3.0E-24 T 29-03-2018 AM354_RS07500 8b252d10f057f81fdef70fe2e674965b 155 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 102 135 3.8E-6 T 29-03-2018 IPR001451 Hexapeptide repeat AM354_RS07500 8b252d10f057f81fdef70fe2e674965b 155 Gene3D G3DSA:2.160.10.10 2 44 4.2E-6 T 29-03-2018 AM354_RS07500 8b252d10f057f81fdef70fe2e674965b 155 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 31 64 5.4E-7 T 29-03-2018 IPR001451 Hexapeptide repeat AM354_RS07500 8b252d10f057f81fdef70fe2e674965b 155 SUPERFAMILY SSF51161 18 154 5.76E-31 T 29-03-2018 IPR011004 Trimeric LpxA-like AM354_RS23005 1cb52501582159c4c87cdcf0acc7b61a 234 Gene3D G3DSA:1.10.3720.10 4 231 9.0E-32 T 29-03-2018 AM354_RS23005 1cb52501582159c4c87cdcf0acc7b61a 234 SUPERFAMILY SSF161098 17 220 3.92E-37 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS23005 1cb52501582159c4c87cdcf0acc7b61a 234 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 21 122 4.4E-14 T 29-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 AM354_RS23005 1cb52501582159c4c87cdcf0acc7b61a 234 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 38 221 1.6E-15 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS06800 e3b9460adcf7b578048ab45e146097a9 295 SUPERFAMILY SSF103481 48 138 2.22E-5 T 29-03-2018 AM354_RS06800 e3b9460adcf7b578048ab45e146097a9 295 SUPERFAMILY SSF103481 187 280 8.63E-11 T 29-03-2018 AM354_RS06800 e3b9460adcf7b578048ab45e146097a9 295 Pfam PF00892 EamA-like transporter family 150 279 6.5E-18 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM354_RS09080 1be853b51c76215a04c98e87cce3f8a9 423 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 317 393 3.8E-17 T 29-03-2018 IPR019489 Clp ATPase, C-terminal AM354_RS09080 1be853b51c76215a04c98e87cce3f8a9 423 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 5 412 1.3E-213 T 29-03-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 AM354_RS09080 1be853b51c76215a04c98e87cce3f8a9 423 Gene3D G3DSA:1.10.8.60 317 408 2.7E-33 T 29-03-2018 AM354_RS09080 1be853b51c76215a04c98e87cce3f8a9 423 SUPERFAMILY SSF57716 13 48 5.84E-12 T 29-03-2018 AM354_RS09080 1be853b51c76215a04c98e87cce3f8a9 423 SMART SM00382 111 302 5.1E-10 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS09080 1be853b51c76215a04c98e87cce3f8a9 423 Gene3D G3DSA:3.40.50.300 56 315 3.6E-67 T 29-03-2018 AM354_RS09080 1be853b51c76215a04c98e87cce3f8a9 423 SUPERFAMILY SSF52540 64 402 7.3E-72 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS09080 1be853b51c76215a04c98e87cce3f8a9 423 SMART SM00994 12 51 1.0E-24 T 29-03-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 AM354_RS09080 1be853b51c76215a04c98e87cce3f8a9 423 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 4 415 53.391 T 29-03-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 AM354_RS09080 1be853b51c76215a04c98e87cce3f8a9 423 Pfam PF06689 ClpX C4-type zinc finger 13 50 1.2E-20 T 29-03-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 AM354_RS09080 1be853b51c76215a04c98e87cce3f8a9 423 Pfam PF07724 AAA domain (Cdc48 subfamily) 112 310 3.0E-48 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AM354_RS09080 1be853b51c76215a04c98e87cce3f8a9 423 SMART SM01086 317 412 1.1E-35 T 29-03-2018 IPR019489 Clp ATPase, C-terminal AM354_RS21100 9aa500366d403faa9d8470d00e48f61d 1296 Gene3D G3DSA:3.90.650.10 425 608 2.7E-30 T 29-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain AM354_RS21100 9aa500366d403faa9d8470d00e48f61d 1296 Gene3D G3DSA:3.90.650.10 820 995 6.1E-31 T 29-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain AM354_RS21100 9aa500366d403faa9d8470d00e48f61d 1296 Hamap MF_00419 Phosphoribosylformylglycinamidine synthase [purL]. 1 1296 21.688 T 29-03-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AM354_RS21100 9aa500366d403faa9d8470d00e48f61d 1296 SUPERFAMILY SSF56042 430 614 3.14E-53 T 29-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain AM354_RS21100 9aa500366d403faa9d8470d00e48f61d 1296 Gene3D G3DSA:3.40.50.880 1039 1295 2.4E-32 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS21100 9aa500366d403faa9d8470d00e48f61d 1296 Gene3D G3DSA:3.30.1330.10 611 812 6.5E-22 T 29-03-2018 IPR016188 PurM-like, N-terminal domain AM354_RS21100 9aa500366d403faa9d8470d00e48f61d 1296 Gene3D G3DSA:3.30.1330.10 218 424 4.0E-52 T 29-03-2018 IPR016188 PurM-like, N-terminal domain AM354_RS21100 9aa500366d403faa9d8470d00e48f61d 1296 Gene3D G3DSA:3.30.1330.10 183 217 0.0034 T 29-03-2018 IPR016188 PurM-like, N-terminal domain AM354_RS21100 9aa500366d403faa9d8470d00e48f61d 1296 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 1040 1293 1.0E-105 T 29-03-2018 AM354_RS21100 9aa500366d403faa9d8470d00e48f61d 1296 Pfam PF02769 AIR synthase related protein, C-terminal domain 835 967 1.1E-12 T 29-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain AM354_RS21100 9aa500366d403faa9d8470d00e48f61d 1296 Pfam PF02769 AIR synthase related protein, C-terminal domain 431 587 1.6E-27 T 29-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain AM354_RS21100 9aa500366d403faa9d8470d00e48f61d 1296 SMART SM01211 1040 1295 7.4E-160 T 29-03-2018 AM354_RS21100 9aa500366d403faa9d8470d00e48f61d 1296 SUPERFAMILY SSF82697 1 151 2.41E-52 T 29-03-2018 AM354_RS21100 9aa500366d403faa9d8470d00e48f61d 1296 SUPERFAMILY SSF55326 220 427 6.63E-66 T 29-03-2018 IPR016188 PurM-like, N-terminal domain AM354_RS21100 9aa500366d403faa9d8470d00e48f61d 1296 SUPERFAMILY SSF109736 154 219 1.01E-21 T 29-03-2018 AM354_RS21100 9aa500366d403faa9d8470d00e48f61d 1296 SUPERFAMILY SSF52317 1036 1294 1.24E-99 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS21100 9aa500366d403faa9d8470d00e48f61d 1296 SUPERFAMILY SSF56042 822 1034 4.78E-58 T 29-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain AM354_RS21100 9aa500366d403faa9d8470d00e48f61d 1296 TIGRFAM TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synthase 3 1294 0.0 T 29-03-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AM354_RS21100 9aa500366d403faa9d8470d00e48f61d 1296 SUPERFAMILY SSF55326 618 815 4.45E-68 T 29-03-2018 IPR016188 PurM-like, N-terminal domain AM354_RS20390 618e7d11a8869c905e30912a739e463c 452 Gene3D G3DSA:3.30.870.10 18 220 2.5E-19 T 29-03-2018 AM354_RS20390 618e7d11a8869c905e30912a739e463c 452 SUPERFAMILY SSF56024 11 211 3.77E-27 T 29-03-2018 AM354_RS20390 618e7d11a8869c905e30912a739e463c 452 PIRSF PIRSF000850 1 452 7.1E-250 T 29-03-2018 AM354_RS20390 618e7d11a8869c905e30912a739e463c 452 SUPERFAMILY SSF56024 254 394 1.66E-16 T 29-03-2018 AM354_RS20390 618e7d11a8869c905e30912a739e463c 452 Pfam PF13091 PLD-like domain 258 400 5.7E-20 T 29-03-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AM354_RS20390 618e7d11a8869c905e30912a739e463c 452 Gene3D G3DSA:3.30.870.10 247 418 9.2E-16 T 29-03-2018 AM354_RS20390 618e7d11a8869c905e30912a739e463c 452 SMART SM00155 353 380 0.0012 T 29-03-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AM354_RS20390 618e7d11a8869c905e30912a739e463c 452 SMART SM00155 134 160 0.0056 T 29-03-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AM354_RS07655 725fda218275948c453fee8c1e08a493 232 Gene3D G3DSA:1.10.357.10 58 231 5.4E-34 T 29-03-2018 AM354_RS07655 725fda218275948c453fee8c1e08a493 232 ProSitePatterns PS01081 TetR-type HTH domain signature. 34 64 - T 29-03-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AM354_RS07655 725fda218275948c453fee8c1e08a493 232 Pfam PF09209 Domain of unknown function (DUF1956) 101 225 4.0E-35 T 29-03-2018 IPR015292 Transcription regulator YbiH, C-terminal AM354_RS07655 725fda218275948c453fee8c1e08a493 232 SUPERFAMILY SSF46689 12 91 4.26E-20 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS07655 725fda218275948c453fee8c1e08a493 232 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 68 7.3E-15 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS07655 725fda218275948c453fee8c1e08a493 232 Gene3D G3DSA:1.10.10.60 3 57 2.3E-19 T 29-03-2018 AM354_RS07655 725fda218275948c453fee8c1e08a493 232 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 43 66 2.2E-7 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS07655 725fda218275948c453fee8c1e08a493 232 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 22 35 2.2E-7 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS07655 725fda218275948c453fee8c1e08a493 232 SUPERFAMILY SSF48498 101 225 4.89E-32 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AM354_RS09875 47dc48e2c78cdc101127468342a5828c 399 TIGRFAM TIGR01767 MTRK: S-methyl-5-thioribose kinase 33 396 1.0E-157 T 29-03-2018 IPR009212 Methylthioribose kinase GO:0009086|GO:0046522 KEGG: 00270+2.7.1.100|KEGG: 00500+2.7.1.10|MetaCyc: PWY-6754 AM354_RS09875 47dc48e2c78cdc101127468342a5828c 399 PIRSF PIRSF031134 1 399 8.4E-163 T 29-03-2018 IPR009212 Methylthioribose kinase GO:0009086|GO:0046522 KEGG: 00270+2.7.1.100|KEGG: 00500+2.7.1.10|MetaCyc: PWY-6754 AM354_RS09875 47dc48e2c78cdc101127468342a5828c 399 Gene3D G3DSA:3.30.200.20 1 111 1.9E-37 T 29-03-2018 AM354_RS09875 47dc48e2c78cdc101127468342a5828c 399 SUPERFAMILY SSF56112 2 397 1.04E-89 T 29-03-2018 IPR011009 Protein kinase-like domain AM354_RS09875 47dc48e2c78cdc101127468342a5828c 399 Pfam PF01636 Phosphotransferase enzyme family 33 263 7.6E-12 T 29-03-2018 IPR002575 Aminoglycoside phosphotransferase AM354_RS09875 47dc48e2c78cdc101127468342a5828c 399 Hamap MF_01683 Methylthioribose kinase [mtnK]. 1 399 209.444 T 29-03-2018 IPR009212 Methylthioribose kinase GO:0009086|GO:0046522 KEGG: 00270+2.7.1.100|KEGG: 00500+2.7.1.10|MetaCyc: PWY-6754 AM354_RS09875 47dc48e2c78cdc101127468342a5828c 399 Gene3D G3DSA:3.90.1200.10 112 371 1.1E-10 T 29-03-2018 AM354_RS05100 87a3149f77807dce95dc2a6bc389473d 446 TIGRFAM TIGR00770 Dcu: transporter, anaerobic C4-dicarboxylate uptake (Dcu) family 6 441 2.9E-190 T 29-03-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 AM354_RS05100 87a3149f77807dce95dc2a6bc389473d 446 PIRSF PIRSF004539 1 444 1.4E-191 T 29-03-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 AM354_RS05100 87a3149f77807dce95dc2a6bc389473d 446 Pfam PF03605 Anaerobic c4-dicarboxylate membrane transporter 6 376 3.5E-146 T 29-03-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 AM354_RS24540 dfc8abdea5ef1a45bd87678ec3991e21 178 Gene3D G3DSA:2.60.40.1090 27 178 1.2E-25 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS24540 dfc8abdea5ef1a45bd87678ec3991e21 178 SUPERFAMILY SSF49401 35 178 6.96E-31 T 29-03-2018 IPR008966 Adhesion domain AM354_RS24540 dfc8abdea5ef1a45bd87678ec3991e21 178 Pfam PF00419 Fimbrial protein 34 178 4.8E-14 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS02610 d0326754e4de3d0de003e828ada73699 1190 SUPERFAMILY SSF56003 46 230 2.62E-30 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS02610 d0326754e4de3d0de003e828ada73699 1190 Pfam PF00034 Cytochrome c 806 905 5.8E-9 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS02610 d0326754e4de3d0de003e828ada73699 1190 Gene3D G3DSA:3.30.365.10 597 747 1.2E-35 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS02610 d0326754e4de3d0de003e828ada73699 1190 SUPERFAMILY SSF54665 206 290 3.71E-8 T 29-03-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AM354_RS02610 d0326754e4de3d0de003e828ada73699 1190 Gene3D G3DSA:1.10.760.10 936 1060 1.7E-15 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS02610 d0326754e4de3d0de003e828ada73699 1190 Gene3D G3DSA:1.10.760.10 782 920 4.4E-20 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS02610 d0326754e4de3d0de003e828ada73699 1190 SMART SM01008 205 291 8.1E-19 T 29-03-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AM354_RS02610 d0326754e4de3d0de003e828ada73699 1190 SUPERFAMILY SSF46626 793 928 2.18E-25 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS02610 d0326754e4de3d0de003e828ada73699 1190 SUPERFAMILY SSF56003 312 744 1.13E-115 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS02610 d0326754e4de3d0de003e828ada73699 1190 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 1081 1162 1.2E-10 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS02610 d0326754e4de3d0de003e828ada73699 1190 Gene3D G3DSA:1.10.760.10 1061 1190 1.0E-18 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS02610 d0326754e4de3d0de003e828ada73699 1190 Gene3D G3DSA:3.30.365.10 422 585 6.4E-40 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS02610 d0326754e4de3d0de003e828ada73699 1190 Gene3D G3DSA:3.30.365.10 327 421 2.0E-26 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS02610 d0326754e4de3d0de003e828ada73699 1190 Gene3D G3DSA:3.30.365.10 32 182 1.6E-31 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS02610 d0326754e4de3d0de003e828ada73699 1190 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 586 688 6.0E-13 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS02610 d0326754e4de3d0de003e828ada73699 1190 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 312 553 8.5E-33 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS02610 d0326754e4de3d0de003e828ada73699 1190 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 46 201 4.5E-20 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS02610 d0326754e4de3d0de003e828ada73699 1190 Gene3D G3DSA:3.90.1170.50 183 326 4.8E-30 T 29-03-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AM354_RS02610 d0326754e4de3d0de003e828ada73699 1190 SUPERFAMILY SSF46626 1067 1178 2.47E-19 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS02610 d0326754e4de3d0de003e828ada73699 1190 SUPERFAMILY SSF46626 941 1061 8.88E-14 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS11950 c0a5ff64f2ae6b5632a59c158134adb1 640 Pfam PF12343 Cold shock protein DEAD box A 575 640 3.5E-16 T 29-03-2018 IPR021046 Cold-shock protein, DEAD box A, C-terminal GO:0016817 AM354_RS11950 c0a5ff64f2ae6b5632a59c158134adb1 640 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 155 163 - T 29-03-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site AM354_RS11950 c0a5ff64f2ae6b5632a59c158134adb1 640 Gene3D G3DSA:3.40.50.300 222 500 4.6E-44 T 29-03-2018 AM354_RS11950 c0a5ff64f2ae6b5632a59c158134adb1 640 Hamap MF_00964 ATP-dependent RNA helicase DeaD [deaD]. 2 558 47.04 T 29-03-2018 IPR028618 ATP-dependent RNA helicase DeaD GO:0000027|GO:0004004|GO:0070417 AM354_RS11950 c0a5ff64f2ae6b5632a59c158134adb1 640 SMART SM00490 260 341 1.4E-31 T 29-03-2018 IPR001650 Helicase, C-terminal AM354_RS11950 c0a5ff64f2ae6b5632a59c158134adb1 640 Gene3D G3DSA:3.40.50.300 2 221 1.9E-60 T 29-03-2018 AM354_RS11950 c0a5ff64f2ae6b5632a59c158134adb1 640 Pfam PF00270 DEAD/DEAH box helicase 32 196 1.4E-51 T 29-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AM354_RS11950 c0a5ff64f2ae6b5632a59c158134adb1 640 SMART SM00487 26 224 1.8E-64 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AM354_RS11950 c0a5ff64f2ae6b5632a59c158134adb1 640 Pfam PF00271 Helicase conserved C-terminal domain 233 341 1.3E-28 T 29-03-2018 IPR001650 Helicase, C-terminal AM354_RS11950 c0a5ff64f2ae6b5632a59c158134adb1 640 SUPERFAMILY SSF52540 76 362 9.66E-73 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS11950 c0a5ff64f2ae6b5632a59c158134adb1 640 Pfam PF03880 DbpA RNA binding domain 487 556 5.9E-20 T 29-03-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain AM354_RS26085 861e1186ca59c87fff328c581ba560a1 576 SUPERFAMILY SSF52374 108 454 2.35E-96 T 29-03-2018 AM354_RS26085 861e1186ca59c87fff328c581ba560a1 576 Pfam PF00750 tRNA synthetases class I (R) 102 446 1.4E-164 T 29-03-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 AM354_RS26085 861e1186ca59c87fff328c581ba560a1 576 Gene3D G3DSA:1.10.730.10 441 576 4.5E-45 T 29-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS26085 861e1186ca59c87fff328c581ba560a1 576 PRINTS PR01038 Arginyl-tRNA synthetase signature 114 129 2.4E-26 T 29-03-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AM354_RS26085 861e1186ca59c87fff328c581ba560a1 576 PRINTS PR01038 Arginyl-tRNA synthetase signature 303 324 2.4E-26 T 29-03-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AM354_RS26085 861e1186ca59c87fff328c581ba560a1 576 PRINTS PR01038 Arginyl-tRNA synthetase signature 153 166 2.4E-26 T 29-03-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AM354_RS26085 861e1186ca59c87fff328c581ba560a1 576 PRINTS PR01038 Arginyl-tRNA synthetase signature 129 145 2.4E-26 T 29-03-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AM354_RS26085 861e1186ca59c87fff328c581ba560a1 576 SUPERFAMILY SSF47323 454 576 7.85E-35 T 29-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS26085 861e1186ca59c87fff328c581ba560a1 576 Gene3D G3DSA:3.30.1360.70 1 106 7.7E-29 T 29-03-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 AM354_RS26085 861e1186ca59c87fff328c581ba560a1 576 Hamap MF_00123 Arginine--tRNA ligase [argS]. 5 576 28.765 T 29-03-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AM354_RS26085 861e1186ca59c87fff328c581ba560a1 576 SMART SM00836 460 576 2.6E-38 T 29-03-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 AM354_RS26085 861e1186ca59c87fff328c581ba560a1 576 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 122 133 - T 29-03-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS26085 861e1186ca59c87fff328c581ba560a1 576 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 7 87 5.6E-21 T 29-03-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 AM354_RS26085 861e1186ca59c87fff328c581ba560a1 576 SMART SM01016 5 87 1.5E-28 T 29-03-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 AM354_RS26085 861e1186ca59c87fff328c581ba560a1 576 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 4 576 4.8E-204 T 29-03-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AM354_RS26085 861e1186ca59c87fff328c581ba560a1 576 SUPERFAMILY SSF55190 2 101 8.89E-22 T 29-03-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 AM354_RS26085 861e1186ca59c87fff328c581ba560a1 576 Pfam PF05746 DALR anticodon binding domain 460 576 6.3E-35 T 29-03-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 AM354_RS26085 861e1186ca59c87fff328c581ba560a1 576 Gene3D G3DSA:3.40.50.620 108 440 6.6E-59 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS13990 5b973dfae49d8501bba86ef5005b3c3b 460 SMART SM00382 142 327 3.7E-4 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS13990 5b973dfae49d8501bba86ef5005b3c3b 460 Gene3D G3DSA:3.40.50.300 76 347 8.1E-90 T 29-03-2018 AM354_RS13990 5b973dfae49d8501bba86ef5005b3c3b 460 SUPERFAMILY SSF50615 1 75 1.23E-24 T 29-03-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AM354_RS13990 5b973dfae49d8501bba86ef5005b3c3b 460 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 3 460 1.5E-262 T 29-03-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 AM354_RS13990 5b973dfae49d8501bba86ef5005b3c3b 460 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 6 71 5.5E-20 T 29-03-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AM354_RS13990 5b973dfae49d8501bba86ef5005b3c3b 460 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 333 342 - T 29-03-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AM354_RS13990 5b973dfae49d8501bba86ef5005b3c3b 460 Gene3D G3DSA:1.10.1140.10 348 458 2.5E-45 T 29-03-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AM354_RS13990 5b973dfae49d8501bba86ef5005b3c3b 460 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 130 342 5.8E-63 T 29-03-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AM354_RS13990 5b973dfae49d8501bba86ef5005b3c3b 460 SUPERFAMILY SSF47917 345 459 1.46E-55 T 29-03-2018 AM354_RS13990 5b973dfae49d8501bba86ef5005b3c3b 460 SUPERFAMILY SSF52540 77 348 5.32E-90 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS13990 5b973dfae49d8501bba86ef5005b3c3b 460 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 460 56.932 T 29-03-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 AM354_RS13990 5b973dfae49d8501bba86ef5005b3c3b 460 Gene3D G3DSA:2.40.10.170 1 75 2.6E-30 T 29-03-2018 AM354_RS14000 19bfd6f9d3a564aa07e4bcb543855d14 513 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 382 507 4.9E-46 T 29-03-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS14000 19bfd6f9d3a564aa07e4bcb543855d14 513 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 512 50.379 T 29-03-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS14000 19bfd6f9d3a564aa07e4bcb543855d14 513 Gene3D G3DSA:3.40.50.300 83 375 1.4E-113 T 29-03-2018 AM354_RS14000 19bfd6f9d3a564aa07e4bcb543855d14 513 SUPERFAMILY SSF47917 383 511 4.97E-47 T 29-03-2018 AM354_RS14000 19bfd6f9d3a564aa07e4bcb543855d14 513 Gene3D G3DSA:1.20.150.20 384 511 6.2E-48 T 29-03-2018 AM354_RS14000 19bfd6f9d3a564aa07e4bcb543855d14 513 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 29 92 2.1E-13 T 29-03-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AM354_RS14000 19bfd6f9d3a564aa07e4bcb543855d14 513 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 375 4.2E-73 T 29-03-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AM354_RS14000 19bfd6f9d3a564aa07e4bcb543855d14 513 SUPERFAMILY SSF52540 96 381 4.83E-95 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS14000 19bfd6f9d3a564aa07e4bcb543855d14 513 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 366 375 - T 29-03-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AM354_RS14000 19bfd6f9d3a564aa07e4bcb543855d14 513 SUPERFAMILY SSF50615 10 94 9.22E-26 T 29-03-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AM354_RS14000 19bfd6f9d3a564aa07e4bcb543855d14 513 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 2 512 2.6E-262 T 29-03-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS14000 19bfd6f9d3a564aa07e4bcb543855d14 513 PIRSF PIRSF039088 1 513 6.1E-232 T 29-03-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS14000 19bfd6f9d3a564aa07e4bcb543855d14 513 Gene3D G3DSA:2.40.30.20 3 82 6.8E-28 T 29-03-2018 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS18620 f99f9beb7642b6ccfb0b4b057955e8d6 427 Pfam PF02040 Arsenical pump membrane protein 4 423 4.4E-154 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS18620 f99f9beb7642b6ccfb0b4b057955e8d6 427 PRINTS PR00758 Arsenical pump membrane protein signature 101 125 8.7E-122 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS18620 f99f9beb7642b6ccfb0b4b057955e8d6 427 PRINTS PR00758 Arsenical pump membrane protein signature 364 389 8.7E-122 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS18620 f99f9beb7642b6ccfb0b4b057955e8d6 427 PRINTS PR00758 Arsenical pump membrane protein signature 278 302 8.7E-122 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS18620 f99f9beb7642b6ccfb0b4b057955e8d6 427 PRINTS PR00758 Arsenical pump membrane protein signature 217 242 8.7E-122 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS18620 f99f9beb7642b6ccfb0b4b057955e8d6 427 PRINTS PR00758 Arsenical pump membrane protein signature 323 345 8.7E-122 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS18620 f99f9beb7642b6ccfb0b4b057955e8d6 427 PRINTS PR00758 Arsenical pump membrane protein signature 177 200 8.7E-122 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS18620 f99f9beb7642b6ccfb0b4b057955e8d6 427 PRINTS PR00758 Arsenical pump membrane protein signature 144 168 8.7E-122 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS18620 f99f9beb7642b6ccfb0b4b057955e8d6 427 PRINTS PR00758 Arsenical pump membrane protein signature 397 421 8.7E-122 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS18620 f99f9beb7642b6ccfb0b4b057955e8d6 427 TIGRFAM TIGR00935 2a45: arsenite/antimonite efflux pump membrane protein 2 427 1.3E-216 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS05765 8d4722dee533f2889bff1b81b57d7e2d 241 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 37 203 8.4E-73 T 29-03-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 AM354_RS05765 8d4722dee533f2889bff1b81b57d7e2d 241 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 39 215 1.5E-75 T 29-03-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 AM354_RS05765 8d4722dee533f2889bff1b81b57d7e2d 241 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 241 98.987 T 29-03-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 AM354_RS05765 8d4722dee533f2889bff1b81b57d7e2d 241 SUPERFAMILY SSF55729 3 228 1.7E-94 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS02270 dd3c72f762f253212532fccf273d0360 697 Pfam PF08447 PAS fold 37 100 8.0E-9 T 29-03-2018 IPR013655 PAS fold-3 GO:0005515 AM354_RS02270 dd3c72f762f253212532fccf273d0360 697 Gene3D G3DSA:3.30.70.270 263 433 5.8E-55 T 29-03-2018 AM354_RS02270 dd3c72f762f253212532fccf273d0360 697 Gene3D G3DSA:3.20.20.450 434 696 6.1E-72 T 29-03-2018 IPR001633 EAL domain AM354_RS02270 dd3c72f762f253212532fccf273d0360 697 SMART SM00052 435 682 2.1E-58 T 29-03-2018 IPR001633 EAL domain AM354_RS02270 dd3c72f762f253212532fccf273d0360 697 SUPERFAMILY SSF55073 269 426 1.96E-47 T 29-03-2018 IPR029787 Nucleotide cyclase AM354_RS02270 dd3c72f762f253212532fccf273d0360 697 SUPERFAMILY SSF55785 131 251 4.01E-11 T 29-03-2018 IPR000014 PAS domain AM354_RS02270 dd3c72f762f253212532fccf273d0360 697 Gene3D G3DSA:3.30.450.20 136 262 9.8E-16 T 29-03-2018 AM354_RS02270 dd3c72f762f253212532fccf273d0360 697 Pfam PF08448 PAS fold 145 254 4.5E-15 T 29-03-2018 IPR013656 PAS fold-4 AM354_RS02270 dd3c72f762f253212532fccf273d0360 697 Gene3D G3DSA:3.30.450.20 14 135 2.4E-12 T 29-03-2018 AM354_RS02270 dd3c72f762f253212532fccf273d0360 697 SUPERFAMILY SSF141868 444 688 4.71E-64 T 29-03-2018 IPR001633 EAL domain AM354_RS02270 dd3c72f762f253212532fccf273d0360 697 Pfam PF00990 Diguanylate cyclase, GGDEF domain 265 419 3.2E-48 T 29-03-2018 IPR000160 GGDEF domain AM354_RS02270 dd3c72f762f253212532fccf273d0360 697 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 264 425 3.0E-40 T 29-03-2018 IPR000160 GGDEF domain AM354_RS02270 dd3c72f762f253212532fccf273d0360 697 SMART SM00267 253 425 1.7E-60 T 29-03-2018 IPR000160 GGDEF domain AM354_RS02270 dd3c72f762f253212532fccf273d0360 697 SUPERFAMILY SSF55785 37 125 2.62E-9 T 29-03-2018 IPR000014 PAS domain AM354_RS02270 dd3c72f762f253212532fccf273d0360 697 Pfam PF00563 EAL domain 444 676 2.4E-59 T 29-03-2018 IPR001633 EAL domain AM354_RS02460 ad851aa7bce8b0a362fd0fc972970a16 289 SMART SM00342 203 286 1.0E-32 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS02460 ad851aa7bce8b0a362fd0fc972970a16 289 SUPERFAMILY SSF46689 189 237 1.61E-11 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS02460 ad851aa7bce8b0a362fd0fc972970a16 289 Gene3D G3DSA:1.10.10.60 242 289 4.0E-15 T 29-03-2018 AM354_RS02460 ad851aa7bce8b0a362fd0fc972970a16 289 Pfam PF12833 Helix-turn-helix domain 209 287 1.1E-23 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS02460 ad851aa7bce8b0a362fd0fc972970a16 289 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 240 282 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM354_RS02460 ad851aa7bce8b0a362fd0fc972970a16 289 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 270 286 3.1E-6 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM354_RS02460 ad851aa7bce8b0a362fd0fc972970a16 289 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 255 270 3.1E-6 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM354_RS02460 ad851aa7bce8b0a362fd0fc972970a16 289 SUPERFAMILY SSF46689 240 288 1.94E-13 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS02460 ad851aa7bce8b0a362fd0fc972970a16 289 Gene3D G3DSA:1.10.10.60 104 241 7.6E-17 T 29-03-2018 AM354_RS06200 d2ab886eb74c1fffeb4934f3e88707af 245 Pfam PF00977 Histidine biosynthesis protein 1 233 4.8E-77 T 29-03-2018 IPR006062 Histidine biosynthesis GO:0000105 AM354_RS06200 d2ab886eb74c1fffeb4934f3e88707af 245 SUPERFAMILY SSF51366 1 242 1.61E-65 T 29-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 AM354_RS06200 d2ab886eb74c1fffeb4934f3e88707af 245 Gene3D G3DSA:3.20.20.70 1 245 4.9E-54 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS06200 d2ab886eb74c1fffeb4934f3e88707af 245 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 2 238 4.0E-78 T 29-03-2018 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 AM354_RS06200 d2ab886eb74c1fffeb4934f3e88707af 245 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 1 241 35.587 T 29-03-2018 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 AM354_RS24565 6c515f350c74236aefa381e49a1ac9cb 790 Gene3D G3DSA:2.140.10.10 150 605 1.2E-83 T 29-03-2018 AM354_RS24565 6c515f350c74236aefa381e49a1ac9cb 790 SUPERFAMILY SSF50998 555 787 8.77E-157 T 29-03-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily AM354_RS24565 6c515f350c74236aefa381e49a1ac9cb 790 SUPERFAMILY SSF50998 158 519 8.77E-157 T 29-03-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily AM354_RS24565 6c515f350c74236aefa381e49a1ac9cb 790 Pfam PF01011 PQQ enzyme repeat 220 248 5.6E-8 T 29-03-2018 IPR002372 Pyrrolo-quinoline quinone repeat AM354_RS24565 6c515f350c74236aefa381e49a1ac9cb 790 Pfam PF01011 PQQ enzyme repeat 719 753 6.3E-5 T 29-03-2018 IPR002372 Pyrrolo-quinoline quinone repeat AM354_RS24565 6c515f350c74236aefa381e49a1ac9cb 790 Pfam PF01011 PQQ enzyme repeat 663 696 2.6E-6 T 29-03-2018 IPR002372 Pyrrolo-quinoline quinone repeat AM354_RS24565 6c515f350c74236aefa381e49a1ac9cb 790 Pfam PF01011 PQQ enzyme repeat 440 465 1.4E-5 T 29-03-2018 IPR002372 Pyrrolo-quinoline quinone repeat AM354_RS24565 6c515f350c74236aefa381e49a1ac9cb 790 Pfam PF01011 PQQ enzyme repeat 286 315 2.8E-4 T 29-03-2018 IPR002372 Pyrrolo-quinoline quinone repeat AM354_RS24565 6c515f350c74236aefa381e49a1ac9cb 790 Pfam PF01011 PQQ enzyme repeat 354 384 3.6E-4 T 29-03-2018 IPR002372 Pyrrolo-quinoline quinone repeat AM354_RS24565 6c515f350c74236aefa381e49a1ac9cb 790 SMART SM00564 479 510 800.0 T 29-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AM354_RS24565 6c515f350c74236aefa381e49a1ac9cb 790 SMART SM00564 710 743 0.014 T 29-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AM354_RS24565 6c515f350c74236aefa381e49a1ac9cb 790 SMART SM00564 336 377 0.0078 T 29-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AM354_RS24565 6c515f350c74236aefa381e49a1ac9cb 790 SMART SM00564 215 246 0.0014 T 29-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AM354_RS24565 6c515f350c74236aefa381e49a1ac9cb 790 Gene3D G3DSA:2.140.10.10 700 785 5.1E-11 T 29-03-2018 AM354_RS24565 6c515f350c74236aefa381e49a1ac9cb 790 ProSitePatterns PS00364 Bacterial quinoprotein dehydrogenases signature 2. 401 422 - T 29-03-2018 IPR001479 Quinoprotein dehydrogenase, conserved site GO:0030288|GO:0055114 AM354_RS24565 6c515f350c74236aefa381e49a1ac9cb 790 TIGRFAM TIGR03074 PQQ_membr_DH: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family 13 787 0.0 T 29-03-2018 IPR017511 PQQ-dependent membrane bound dehydrogenase GO:0016021|GO:0016614|GO:0048038|GO:0055114 AM354_RS01405 fe5e301b560430cd708d7820a67f5f5c 499 Pfam PF02074 Carboxypeptidase Taq (M32) metallopeptidase 16 498 7.5E-94 T 29-03-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AM354_RS01405 fe5e301b560430cd708d7820a67f5f5c 499 SUPERFAMILY SSF55486 7 499 2.08E-117 T 29-03-2018 AM354_RS01405 fe5e301b560430cd708d7820a67f5f5c 499 PIRSF PIRSF006615 6 499 4.1E-192 T 29-03-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AM354_RS01405 fe5e301b560430cd708d7820a67f5f5c 499 Gene3D G3DSA:1.10.1370.10 44 498 2.7E-29 T 29-03-2018 AM354_RS01405 fe5e301b560430cd708d7820a67f5f5c 499 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 405 426 9.3E-42 T 29-03-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AM354_RS01405 fe5e301b560430cd708d7820a67f5f5c 499 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 152 172 9.3E-42 T 29-03-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AM354_RS01405 fe5e301b560430cd708d7820a67f5f5c 499 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 268 287 9.3E-42 T 29-03-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AM354_RS01405 fe5e301b560430cd708d7820a67f5f5c 499 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 295 311 9.3E-42 T 29-03-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AM354_RS01405 fe5e301b560430cd708d7820a67f5f5c 499 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 450 468 9.3E-42 T 29-03-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AM354_RS01405 fe5e301b560430cd708d7820a67f5f5c 499 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 248 267 9.3E-42 T 29-03-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AM354_RS01405 fe5e301b560430cd708d7820a67f5f5c 499 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 335 354 9.3E-42 T 29-03-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AM354_RS14075 c1dc505158cb295d1157fda606074ba0 501 Pfam PF00005 ABC transporter 269 423 6.8E-24 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS14075 c1dc505158cb295d1157fda606074ba0 501 Pfam PF00005 ABC transporter 22 169 1.6E-27 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS14075 c1dc505158cb295d1157fda606074ba0 501 ProSitePatterns PS00211 ABC transporters family signature. 396 410 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS14075 c1dc505158cb295d1157fda606074ba0 501 SMART SM00382 29 225 1.3E-8 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS14075 c1dc505158cb295d1157fda606074ba0 501 SMART SM00382 277 472 7.1E-9 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS14075 c1dc505158cb295d1157fda606074ba0 501 Gene3D G3DSA:3.40.50.300 1 259 3.9E-52 T 29-03-2018 AM354_RS14075 c1dc505158cb295d1157fda606074ba0 501 Gene3D G3DSA:3.40.50.300 260 496 1.6E-42 T 29-03-2018 AM354_RS14075 c1dc505158cb295d1157fda606074ba0 501 SUPERFAMILY SSF52540 3 231 1.08E-55 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS14075 c1dc505158cb295d1157fda606074ba0 501 SUPERFAMILY SSF52540 267 483 4.07E-49 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS23095 216ae607da766a3994159550ac62018e 164 SUPERFAMILY SSF116960 1 164 1.57E-65 T 29-03-2018 AM354_RS23095 216ae607da766a3994159550ac62018e 164 Pfam PF03887 YfbU domain 1 164 1.0E-66 T 29-03-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU AM354_RS23095 216ae607da766a3994159550ac62018e 164 Gene3D G3DSA:1.10.3190.10 54 164 4.5E-41 T 29-03-2018 IPR023146 YfbU, alpha-helical bundle domain AM354_RS23095 216ae607da766a3994159550ac62018e 164 PIRSF PIRSF006272 1 164 3.1E-73 T 29-03-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU AM354_RS23095 216ae607da766a3994159550ac62018e 164 ProDom PD035118 UPF0304 YFBU PLASMID YPO2563/Y1624/YP2374 YBFU PM1500 OXYGEN ECA3037 VV12093 PROTEIN 1 164 5.0E-86 T 29-03-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU AM354_RS23095 216ae607da766a3994159550ac62018e 164 Gene3D G3DSA:1.10.287.680 1 47 2.6E-25 T 29-03-2018 IPR023145 YfbU, helix-hairpin domain AM354_RS23095 216ae607da766a3994159550ac62018e 164 Hamap MF_00762 UPF0304 protein YfbU [yfbU]. 1 164 37.24 T 29-03-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU AM354_RS01765 8007c12b86f0f46bd6304ba8e40f8040 500 Pfam PF00171 Aldehyde dehydrogenase family 33 491 2.6E-168 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM354_RS01765 8007c12b86f0f46bd6304ba8e40f8040 500 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 296 307 - T 29-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AM354_RS01765 8007c12b86f0f46bd6304ba8e40f8040 500 Gene3D G3DSA:3.40.309.10 284 475 2.2E-68 T 29-03-2018 AM354_RS01765 8007c12b86f0f46bd6304ba8e40f8040 500 Gene3D G3DSA:3.40.605.10 9 283 2.5E-95 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM354_RS01765 8007c12b86f0f46bd6304ba8e40f8040 500 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 267 274 - T 29-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AM354_RS01765 8007c12b86f0f46bd6304ba8e40f8040 500 SUPERFAMILY SSF53720 14 495 9.95E-163 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM354_RS00055 44aa79f13183b9add0ac07fea1c2d3cd 173 Gene3D G3DSA:3.30.420.10 2 159 9.2E-52 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS00055 44aa79f13183b9add0ac07fea1c2d3cd 173 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 4 158 6.2E-81 T 29-03-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AM354_RS00055 44aa79f13183b9add0ac07fea1c2d3cd 173 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 2 153 46.865 T 29-03-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AM354_RS00055 44aa79f13183b9add0ac07fea1c2d3cd 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 5 18 1.6E-42 T 29-03-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AM354_RS00055 44aa79f13183b9add0ac07fea1c2d3cd 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 138 150 1.6E-42 T 29-03-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AM354_RS00055 44aa79f13183b9add0ac07fea1c2d3cd 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 107 126 1.6E-42 T 29-03-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AM354_RS00055 44aa79f13183b9add0ac07fea1c2d3cd 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 61 77 1.6E-42 T 29-03-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AM354_RS00055 44aa79f13183b9add0ac07fea1c2d3cd 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 83 99 1.6E-42 T 29-03-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AM354_RS00055 44aa79f13183b9add0ac07fea1c2d3cd 173 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 113 147 - T 29-03-2018 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 AM354_RS00055 44aa79f13183b9add0ac07fea1c2d3cd 173 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 4 150 7.8E-66 T 29-03-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AM354_RS00055 44aa79f13183b9add0ac07fea1c2d3cd 173 SUPERFAMILY SSF53098 3 156 1.33E-54 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS22560 0a4cabcf68ebf6f700b792d6dfb8f735 415 Pfam PF00654 Voltage gated chloride channel 67 392 1.5E-23 T 29-03-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AM354_RS22560 0a4cabcf68ebf6f700b792d6dfb8f735 415 SUPERFAMILY SSF81340 11 398 5.23E-42 T 29-03-2018 IPR014743 Chloride channel, core GO:0005216|GO:0055085 Reactome: R-HSA-2672351 AM354_RS22560 0a4cabcf68ebf6f700b792d6dfb8f735 415 PRINTS PR00762 Chloride channel signature 153 172 1.9E-6 T 29-03-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AM354_RS22560 0a4cabcf68ebf6f700b792d6dfb8f735 415 PRINTS PR00762 Chloride channel signature 320 340 1.9E-6 T 29-03-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AM354_RS22560 0a4cabcf68ebf6f700b792d6dfb8f735 415 PRINTS PR00762 Chloride channel signature 103 122 1.9E-6 T 29-03-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AM354_RS22560 0a4cabcf68ebf6f700b792d6dfb8f735 415 Gene3D G3DSA:1.10.3080.10 4 401 4.0E-33 T 29-03-2018 IPR014743 Chloride channel, core GO:0005216|GO:0055085 Reactome: R-HSA-2672351 AM354_RS22560 0a4cabcf68ebf6f700b792d6dfb8f735 415 Hamap MF_01115 Putative ion-transport protein YfeO [yfeO]. 9 410 37.981 T 29-03-2018 IPR022969 Chloride channel YfeO AM354_RS15985 0e2ddad6f2f17dd7d43a0d4bea17dd86 394 PRINTS PR00315 GTP-binding elongation factor signature 14 27 2.0E-24 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS15985 0e2ddad6f2f17dd7d43a0d4bea17dd86 394 PRINTS PR00315 GTP-binding elongation factor signature 58 66 2.0E-24 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS15985 0e2ddad6f2f17dd7d43a0d4bea17dd86 394 PRINTS PR00315 GTP-binding elongation factor signature 94 105 2.0E-24 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS15985 0e2ddad6f2f17dd7d43a0d4bea17dd86 394 PRINTS PR00315 GTP-binding elongation factor signature 131 140 2.0E-24 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS15985 0e2ddad6f2f17dd7d43a0d4bea17dd86 394 PRINTS PR00315 GTP-binding elongation factor signature 78 88 2.0E-24 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS15985 0e2ddad6f2f17dd7d43a0d4bea17dd86 394 Gene3D G3DSA:3.40.50.300 75 203 6.1E-32 T 29-03-2018 AM354_RS15985 0e2ddad6f2f17dd7d43a0d4bea17dd86 394 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 9.7E-15 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AM354_RS15985 0e2ddad6f2f17dd7d43a0d4bea17dd86 394 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 394 60.881 T 29-03-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AM354_RS15985 0e2ddad6f2f17dd7d43a0d4bea17dd86 394 SUPERFAMILY SSF50465 298 393 5.18E-36 T 29-03-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal AM354_RS15985 0e2ddad6f2f17dd7d43a0d4bea17dd86 394 Gene3D G3DSA:2.40.30.10 300 393 4.9E-33 T 29-03-2018 AM354_RS15985 0e2ddad6f2f17dd7d43a0d4bea17dd86 394 SUPERFAMILY SSF52540 6 219 2.58E-60 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS15985 0e2ddad6f2f17dd7d43a0d4bea17dd86 394 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 29-03-2018 IPR031157 Tr-type G domain, conserved site AM354_RS15985 0e2ddad6f2f17dd7d43a0d4bea17dd86 394 Pfam PF00009 Elongation factor Tu GTP binding domain 10 201 4.6E-59 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS15985 0e2ddad6f2f17dd7d43a0d4bea17dd86 394 SUPERFAMILY SSF50447 205 301 1.71E-30 T 29-03-2018 IPR009000 Translation protein, beta-barrel domain AM354_RS15985 0e2ddad6f2f17dd7d43a0d4bea17dd86 394 Pfam PF03143 Elongation factor Tu C-terminal domain 298 392 1.3E-33 T 29-03-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal AM354_RS15985 0e2ddad6f2f17dd7d43a0d4bea17dd86 394 Gene3D G3DSA:2.40.30.10 206 299 1.4E-32 T 29-03-2018 AM354_RS15985 0e2ddad6f2f17dd7d43a0d4bea17dd86 394 Gene3D G3DSA:3.40.50.300 2 74 4.9E-11 T 29-03-2018 AM354_RS15985 0e2ddad6f2f17dd7d43a0d4bea17dd86 394 Pfam PF03144 Elongation factor Tu domain 2 225 293 3.9E-17 T 29-03-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AM354_RS15985 0e2ddad6f2f17dd7d43a0d4bea17dd86 394 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 2 393 2.0E-237 T 29-03-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AM354_RS00505 304457dce96b12ffe09e98d76d7abfac 187 Gene3D G3DSA:1.10.10.60 2 45 2.3E-15 T 29-03-2018 AM354_RS00505 304457dce96b12ffe09e98d76d7abfac 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 1.8E-5 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS00505 304457dce96b12ffe09e98d76d7abfac 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 1.8E-5 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS00505 304457dce96b12ffe09e98d76d7abfac 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 58 2.7E-9 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS00505 304457dce96b12ffe09e98d76d7abfac 187 SUPERFAMILY SSF46689 2 81 3.75E-16 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS00505 304457dce96b12ffe09e98d76d7abfac 187 Gene3D G3DSA:1.10.10.60 46 175 7.1E-8 T 29-03-2018 AM354_RS03070 77112853604de2ec18bf78c0589708f6 303 Pfam PF03466 LysR substrate binding domain 83 286 1.8E-36 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS03070 77112853604de2ec18bf78c0589708f6 303 Gene3D G3DSA:3.40.190.10 82 170 3.1E-12 T 29-03-2018 AM354_RS03070 77112853604de2ec18bf78c0589708f6 303 Gene3D G3DSA:3.40.190.10 171 258 3.4E-21 T 29-03-2018 AM354_RS03070 77112853604de2ec18bf78c0589708f6 303 Gene3D G3DSA:1.10.10.10 1 78 5.6E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS03070 77112853604de2ec18bf78c0589708f6 303 SUPERFAMILY SSF53850 84 289 1.96E-38 T 29-03-2018 AM354_RS03070 77112853604de2ec18bf78c0589708f6 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 1 56 5.5E-20 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS03070 77112853604de2ec18bf78c0589708f6 303 SUPERFAMILY SSF46785 2 105 1.49E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS08395 94abe75a42deecd3305edaaa0bcd517e 321 Pfam PF04055 Radical SAM superfamily 91 251 1.5E-15 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AM354_RS08395 94abe75a42deecd3305edaaa0bcd517e 321 TIGRFAM TIGR00510 lipA: lipoyl synthase 21 321 7.8E-161 T 29-03-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AM354_RS08395 94abe75a42deecd3305edaaa0bcd517e 321 PIRSF PIRSF005963 2 321 3.7E-131 T 29-03-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AM354_RS08395 94abe75a42deecd3305edaaa0bcd517e 321 SUPERFAMILY SSF102114 52 316 2.35E-67 T 29-03-2018 AM354_RS08395 94abe75a42deecd3305edaaa0bcd517e 321 Gene3D G3DSA:3.20.20.70 28 302 8.0E-27 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS08395 94abe75a42deecd3305edaaa0bcd517e 321 SMART SM00729 84 293 1.3E-16 T 29-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 AM354_RS08395 94abe75a42deecd3305edaaa0bcd517e 321 Hamap MF_00206 Lipoyl synthase [lipA]. 1 321 157.396 T 29-03-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AM354_RS08395 94abe75a42deecd3305edaaa0bcd517e 321 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 27 73 6.7E-7 T 29-03-2018 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AM354_RS25535 06b19b7a85b2a5a0132e81e981cc2ceb 494 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 419 439 - T 29-03-2018 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 AM354_RS25535 06b19b7a85b2a5a0132e81e981cc2ceb 494 Pfam PF00474 Sodium:solute symporter family 35 437 3.2E-141 T 29-03-2018 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 AM354_RS25535 06b19b7a85b2a5a0132e81e981cc2ceb 494 TIGRFAM TIGR02121 Na_Pro_sym: sodium/proline symporter 6 491 4.9E-228 T 29-03-2018 IPR011851 Sodium/proline symporter GO:0005298|GO:0006814|GO:0015824|GO:0016021|GO:0031402 AM354_RS25535 06b19b7a85b2a5a0132e81e981cc2ceb 494 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 35 437 2.6E-125 T 29-03-2018 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 AM354_RS25535 06b19b7a85b2a5a0132e81e981cc2ceb 494 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 157 182 - T 29-03-2018 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 AM354_RS02900 ba7551b11ea16c5719cd4363fd3474c3 695 Pfam PF13375 RnfC Barrel sandwich hybrid domain 14 115 2.8E-32 T 29-03-2018 IPR026902 RnfC Barrel sandwich hybrid domain AM354_RS02900 ba7551b11ea16c5719cd4363fd3474c3 695 SUPERFAMILY SSF142019 94 303 3.14E-59 T 29-03-2018 AM354_RS02900 ba7551b11ea16c5719cd4363fd3474c3 695 Hamap MF_00461 Electron transport complex subunit RsxC [rsxC]. 1 695 255.431 T 29-03-2018 IPR010208 Electron transport complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 AM354_RS02900 ba7551b11ea16c5719cd4363fd3474c3 695 Gene3D G3DSA:3.30.70.20 385 486 1.6E-17 T 29-03-2018 AM354_RS02900 ba7551b11ea16c5719cd4363fd3474c3 695 Gene3D G3DSA:3.30.70.20 302 384 6.0E-5 T 29-03-2018 AM354_RS02900 ba7551b11ea16c5719cd4363fd3474c3 695 Pfam PF10531 SLBB domain 296 344 8.4E-11 T 29-03-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS02900 ba7551b11ea16c5719cd4363fd3474c3 695 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 416 427 - T 29-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM354_RS02900 ba7551b11ea16c5719cd4363fd3474c3 695 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 377 388 - T 29-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM354_RS02900 ba7551b11ea16c5719cd4363fd3474c3 695 SUPERFAMILY SSF46548 336 443 1.4E-20 T 29-03-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AM354_RS02900 ba7551b11ea16c5719cd4363fd3474c3 695 Pfam PF13237 4Fe-4S dicluster domain 373 427 4.4E-9 T 29-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM354_RS02900 ba7551b11ea16c5719cd4363fd3474c3 695 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 139 283 1.1E-46 T 29-03-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS02900 ba7551b11ea16c5719cd4363fd3474c3 695 TIGRFAM TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit 13 445 1.2E-183 T 29-03-2018 IPR010208 Electron transport complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 AM354_RS24765 f8c4125e586c4476fbd6e6cf9427064b 350 SUPERFAMILY SSF51735 314 347 5.08E-32 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS24765 f8c4125e586c4476fbd6e6cf9427064b 350 SUPERFAMILY SSF51735 7 263 5.08E-32 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS24765 f8c4125e586c4476fbd6e6cf9427064b 350 Gene3D G3DSA:3.40.50.720 2 350 2.0E-39 T 29-03-2018 AM354_RS24765 f8c4125e586c4476fbd6e6cf9427064b 350 Pfam PF01370 NAD dependent epimerase/dehydratase family 7 103 5.4E-9 T 29-03-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AM354_RS23305 22fd4ebca8a90e77e8236f8cfbb8dec5 241 SUPERFAMILY SSF53335 18 229 3.66E-45 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS23305 22fd4ebca8a90e77e8236f8cfbb8dec5 241 Pfam PF13489 Methyltransferase domain 58 197 4.7E-25 T 29-03-2018 AM354_RS23305 22fd4ebca8a90e77e8236f8cfbb8dec5 241 Gene3D G3DSA:3.40.50.150 1 240 6.2E-48 T 29-03-2018 AM354_RS23305 22fd4ebca8a90e77e8236f8cfbb8dec5 241 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 14 240 38.059 T 29-03-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 AM354_RS23305 22fd4ebca8a90e77e8236f8cfbb8dec5 241 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 16 234 1.7E-89 T 29-03-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 AM354_RS24445 025362d2d86ab95003f8fc2bafd3dee4 447 TIGRFAM TIGR02426 protocat_pcaB: 3-carboxy-cis,cis-muconate cycloisomerase 3 346 9.4E-120 T 29-03-2018 IPR012789 3-carboxy-cis,cis-muconate cycloisomerase GO:0019619|GO:0047472 KEGG: 00362+5.5.1.2 AM354_RS24445 025362d2d86ab95003f8fc2bafd3dee4 447 ProSitePatterns PS00163 Fumarate lyases signature. 273 282 - T 29-03-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 AM354_RS24445 025362d2d86ab95003f8fc2bafd3dee4 447 SUPERFAMILY SSF48557 2 442 4.56E-109 T 29-03-2018 IPR008948 L-Aspartase-like GO:0003824 AM354_RS24445 025362d2d86ab95003f8fc2bafd3dee4 447 Gene3D G3DSA:1.10.40.30 373 440 1.1E-21 T 29-03-2018 AM354_RS24445 025362d2d86ab95003f8fc2bafd3dee4 447 Pfam PF00206 Lyase 11 295 1.4E-48 T 29-03-2018 IPR022761 Fumarate lyase, N-terminal AM354_RS24445 025362d2d86ab95003f8fc2bafd3dee4 447 Gene3D G3DSA:1.20.200.10 103 372 6.3E-76 T 29-03-2018 AM354_RS24445 025362d2d86ab95003f8fc2bafd3dee4 447 SMART SM00998 361 440 4.7E-23 T 29-03-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AM354_RS24445 025362d2d86ab95003f8fc2bafd3dee4 447 PRINTS PR00145 Argininosuccinate lyase family signature 138 158 3.5E-8 T 29-03-2018 AM354_RS24445 025362d2d86ab95003f8fc2bafd3dee4 447 PRINTS PR00145 Argininosuccinate lyase family signature 97 119 3.5E-8 T 29-03-2018 AM354_RS24445 025362d2d86ab95003f8fc2bafd3dee4 447 PRINTS PR00145 Argininosuccinate lyase family signature 228 252 3.5E-8 T 29-03-2018 AM354_RS24445 025362d2d86ab95003f8fc2bafd3dee4 447 PRINTS PR00145 Argininosuccinate lyase family signature 273 289 3.5E-8 T 29-03-2018 AM354_RS24445 025362d2d86ab95003f8fc2bafd3dee4 447 PRINTS PR00149 Fumarate lyase superfamily signature 143 161 7.7E-22 T 29-03-2018 IPR000362 Fumarate lyase family AM354_RS24445 025362d2d86ab95003f8fc2bafd3dee4 447 PRINTS PR00149 Fumarate lyase superfamily signature 273 289 7.7E-22 T 29-03-2018 IPR000362 Fumarate lyase family AM354_RS24445 025362d2d86ab95003f8fc2bafd3dee4 447 PRINTS PR00149 Fumarate lyase superfamily signature 98 116 7.7E-22 T 29-03-2018 IPR000362 Fumarate lyase family AM354_RS24445 025362d2d86ab95003f8fc2bafd3dee4 447 PRINTS PR00149 Fumarate lyase superfamily signature 228 255 7.7E-22 T 29-03-2018 IPR000362 Fumarate lyase family AM354_RS24445 025362d2d86ab95003f8fc2bafd3dee4 447 Pfam PF10397 Adenylosuccinate lyase C-terminus 362 439 8.6E-18 T 29-03-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AM354_RS24445 025362d2d86ab95003f8fc2bafd3dee4 447 Gene3D G3DSA:1.10.275.10 6 102 1.6E-17 T 29-03-2018 IPR024083 Fumarase/histidase, N-terminal AM354_RS01315 d3eb609a86b80dcfe56fc5c84316277a 1177 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 426 607 2.4E-32 T 29-03-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 AM354_RS01315 d3eb609a86b80dcfe56fc5c84316277a 1177 Gene3D G3DSA:3.40.920.10 418 622 5.2E-52 T 29-03-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 AM354_RS01315 d3eb609a86b80dcfe56fc5c84316277a 1177 PIRSF PIRSF000159 1 1177 0.0 T 29-03-2018 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 AM354_RS01315 d3eb609a86b80dcfe56fc5c84316277a 1177 Gene3D G3DSA:3.40.50.970 793 1171 4.5E-103 T 29-03-2018 AM354_RS01315 d3eb609a86b80dcfe56fc5c84316277a 1177 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 13 242 4.2E-79 T 29-03-2018 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 AM354_RS01315 d3eb609a86b80dcfe56fc5c84316277a 1177 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 745 756 - T 29-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM354_RS01315 d3eb609a86b80dcfe56fc5c84316277a 1177 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 689 700 - T 29-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM354_RS01315 d3eb609a86b80dcfe56fc5c84316277a 1177 Pfam PF10371 Domain of unknown function 627 678 1.5E-23 T 29-03-2018 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 AM354_RS01315 d3eb609a86b80dcfe56fc5c84316277a 1177 SUPERFAMILY SSF52922 256 412 1.57E-42 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AM354_RS01315 d3eb609a86b80dcfe56fc5c84316277a 1177 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 265 350 2.6E-15 T 29-03-2018 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II AM354_RS01315 d3eb609a86b80dcfe56fc5c84316277a 1177 TIGRFAM TIGR02176 pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase 1 1168 0.0 T 29-03-2018 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 AM354_RS01315 d3eb609a86b80dcfe56fc5c84316277a 1177 Gene3D G3DSA:3.40.50.920 255 417 1.2E-40 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AM354_RS01315 d3eb609a86b80dcfe56fc5c84316277a 1177 SUPERFAMILY SSF52518 2 254 2.3E-71 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS01315 d3eb609a86b80dcfe56fc5c84316277a 1177 SMART SM00890 622 679 1.7E-30 T 29-03-2018 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 AM354_RS01315 d3eb609a86b80dcfe56fc5c84316277a 1177 Pfam PF12838 4Fe-4S dicluster domain 689 757 1.0E-9 T 29-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM354_RS01315 d3eb609a86b80dcfe56fc5c84316277a 1177 Gene3D G3DSA:3.30.70.20 669 791 6.5E-30 T 29-03-2018 AM354_RS01315 d3eb609a86b80dcfe56fc5c84316277a 1177 SUPERFAMILY SSF53323 419 668 3.4E-74 T 29-03-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 AM354_RS01315 d3eb609a86b80dcfe56fc5c84316277a 1177 Gene3D G3DSA:3.40.50.970 1 254 2.6E-47 T 29-03-2018 AM354_RS01315 d3eb609a86b80dcfe56fc5c84316277a 1177 SUPERFAMILY SSF52518 795 1164 1.24E-118 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS01315 d3eb609a86b80dcfe56fc5c84316277a 1177 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 949 1069 5.5E-9 T 29-03-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AM354_RS01315 d3eb609a86b80dcfe56fc5c84316277a 1177 SUPERFAMILY SSF54862 665 837 9.21E-22 T 29-03-2018 AM354_RS01315 d3eb609a86b80dcfe56fc5c84316277a 1177 Gene3D G3DSA:4.10.780.10 634 668 1.0E-15 T 29-03-2018 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 AM354_RS04990 807dc8fac1d54499c3ddf3e7ddbd3aac 562 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 241 254 - T 29-03-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AM354_RS04990 807dc8fac1d54499c3ddf3e7ddbd3aac 562 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 38 54 - T 29-03-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AM354_RS04990 807dc8fac1d54499c3ddf3e7ddbd3aac 562 SUPERFAMILY SSF89000 388 436 2.98E-14 T 29-03-2018 AM354_RS04990 807dc8fac1d54499c3ddf3e7ddbd3aac 562 SUPERFAMILY SSF110921 445 552 2.62E-25 T 29-03-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AM354_RS04990 807dc8fac1d54499c3ddf3e7ddbd3aac 562 Hamap MF_00572 2-isopropylmalate synthase [leuA]. 6 555 53.164 T 29-03-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AM354_RS04990 807dc8fac1d54499c3ddf3e7ddbd3aac 562 SMART SM00917 422 554 9.9E-24 T 29-03-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AM354_RS04990 807dc8fac1d54499c3ddf3e7ddbd3aac 562 Pfam PF08502 LeuA allosteric (dimerisation) domain 423 553 1.2E-19 T 29-03-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AM354_RS04990 807dc8fac1d54499c3ddf3e7ddbd3aac 562 Pfam PF00682 HMGL-like 31 311 3.4E-71 T 29-03-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 AM354_RS04990 807dc8fac1d54499c3ddf3e7ddbd3aac 562 SUPERFAMILY SSF51569 20 328 7.14E-96 T 29-03-2018 AM354_RS04990 807dc8fac1d54499c3ddf3e7ddbd3aac 562 TIGRFAM TIGR00970 leuA_yeast: 2-isopropylmalate synthase 5 549 9.4E-243 T 29-03-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AM354_RS04990 807dc8fac1d54499c3ddf3e7ddbd3aac 562 Gene3D G3DSA:3.20.20.70 8 376 2.4E-110 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS17175 999d17ff99120e30daaacbe439be8b96 411 Pfam PF00375 Sodium:dicarboxylate symporter family 13 392 3.9E-62 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS17175 999d17ff99120e30daaacbe439be8b96 411 Gene3D G3DSA:1.10.3860.10 2 402 2.1E-72 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS17175 999d17ff99120e30daaacbe439be8b96 411 PRINTS PR00173 Glutamate-aspartate symporter signature 39 64 1.7E-14 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS17175 999d17ff99120e30daaacbe439be8b96 411 PRINTS PR00173 Glutamate-aspartate symporter signature 347 367 1.7E-14 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS17175 999d17ff99120e30daaacbe439be8b96 411 PRINTS PR00173 Glutamate-aspartate symporter signature 4 24 1.7E-14 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS17175 999d17ff99120e30daaacbe439be8b96 411 PRINTS PR00173 Glutamate-aspartate symporter signature 183 202 1.7E-14 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS17175 999d17ff99120e30daaacbe439be8b96 411 PRINTS PR00173 Glutamate-aspartate symporter signature 285 311 1.7E-14 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS17175 999d17ff99120e30daaacbe439be8b96 411 PRINTS PR00173 Glutamate-aspartate symporter signature 320 339 1.7E-14 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS17175 999d17ff99120e30daaacbe439be8b96 411 SUPERFAMILY SSF118215 13 395 4.71E-95 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS17175 999d17ff99120e30daaacbe439be8b96 411 Hamap MF_01582 Serine/threonine transporter SstT [sstT]. 1 402 36.983 T 29-03-2018 IPR023025 Serine/threonine transporter SstT GO:0015293|GO:0015826|GO:0032329 AM354_RS06180 75b4f0dad75310def7d1de2fc0b0db51 435 PIRSF PIRSF000099 1 431 2.0E-164 T 29-03-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AM354_RS06180 75b4f0dad75310def7d1de2fc0b0db51 435 Pfam PF00815 Histidinol dehydrogenase 29 428 1.0E-162 T 29-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AM354_RS06180 75b4f0dad75310def7d1de2fc0b0db51 435 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 8 428 40.411 T 29-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AM354_RS06180 75b4f0dad75310def7d1de2fc0b0db51 435 Gene3D G3DSA:3.40.50.1980 227 372 1.1E-69 T 29-03-2018 AM354_RS06180 75b4f0dad75310def7d1de2fc0b0db51 435 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 37 427 1.5E-157 T 29-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AM354_RS06180 75b4f0dad75310def7d1de2fc0b0db51 435 Gene3D G3DSA:3.40.50.1980 30 226 1.3E-84 T 29-03-2018 AM354_RS06180 75b4f0dad75310def7d1de2fc0b0db51 435 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 231 263 - T 29-03-2018 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 AM354_RS06180 75b4f0dad75310def7d1de2fc0b0db51 435 SUPERFAMILY SSF53720 12 428 4.71E-87 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM354_RS06180 75b4f0dad75310def7d1de2fc0b0db51 435 PRINTS PR00083 Histidinol dehydrogenase signature 110 137 1.2E-98 T 29-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AM354_RS06180 75b4f0dad75310def7d1de2fc0b0db51 435 PRINTS PR00083 Histidinol dehydrogenase signature 37 61 1.2E-98 T 29-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AM354_RS06180 75b4f0dad75310def7d1de2fc0b0db51 435 PRINTS PR00083 Histidinol dehydrogenase signature 199 224 1.2E-98 T 29-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AM354_RS06180 75b4f0dad75310def7d1de2fc0b0db51 435 PRINTS PR00083 Histidinol dehydrogenase signature 253 272 1.2E-98 T 29-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AM354_RS06180 75b4f0dad75310def7d1de2fc0b0db51 435 PRINTS PR00083 Histidinol dehydrogenase signature 362 380 1.2E-98 T 29-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AM354_RS06180 75b4f0dad75310def7d1de2fc0b0db51 435 PRINTS PR00083 Histidinol dehydrogenase signature 321 346 1.2E-98 T 29-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AM354_RS06180 75b4f0dad75310def7d1de2fc0b0db51 435 PRINTS PR00083 Histidinol dehydrogenase signature 169 195 1.2E-98 T 29-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AM354_RS06180 75b4f0dad75310def7d1de2fc0b0db51 435 PRINTS PR00083 Histidinol dehydrogenase signature 231 252 1.2E-98 T 29-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AM354_RS02865 20cef1da08f084603f7f2ec1b840719b 332 ProSitePatterns PS00485 Adenosine and AMP deaminase signature. 274 280 - T 29-03-2018 IPR006650 Adenosine/AMP deaminase active site GO:0009168|GO:0019239 Reactome: R-HSA-74217 AM354_RS02865 20cef1da08f084603f7f2ec1b840719b 332 Pfam PF00962 Adenosine/AMP deaminase 6 327 2.1E-93 T 29-03-2018 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 AM354_RS02865 20cef1da08f084603f7f2ec1b840719b 332 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 6 330 5.3E-109 T 29-03-2018 IPR006330 Adenosine/adenine deaminase GO:0019239 Reactome: R-HSA-74217 AM354_RS02865 20cef1da08f084603f7f2ec1b840719b 332 Gene3D G3DSA:3.20.20.140 4 332 1.5E-74 T 29-03-2018 AM354_RS02865 20cef1da08f084603f7f2ec1b840719b 332 SUPERFAMILY SSF51556 5 327 2.32E-78 T 29-03-2018 IPR032466 Metal-dependent hydrolase AM354_RS02865 20cef1da08f084603f7f2ec1b840719b 332 Hamap MF_00540 Adenosine deaminase [add]. 1 331 53.329 T 29-03-2018 IPR028893 Adenosine deaminase GO:0004000|GO:0009168 KEGG: 00230+3.5.4.4|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-74217 AM354_RS06500 622b6d5ea16a9608477e98ddb39fe6c0 625 Pfam PF00005 ABC transporter 346 496 3.4E-32 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS06500 622b6d5ea16a9608477e98ddb39fe6c0 625 Pfam PF00005 ABC transporter 42 205 5.9E-25 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS06500 622b6d5ea16a9608477e98ddb39fe6c0 625 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 257 289 8.3E-4 T 29-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AM354_RS06500 622b6d5ea16a9608477e98ddb39fe6c0 625 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 548 580 1.5E-8 T 29-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AM354_RS06500 622b6d5ea16a9608477e98ddb39fe6c0 625 SUPERFAMILY SSF52540 21 277 4.08E-63 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS06500 622b6d5ea16a9608477e98ddb39fe6c0 625 SUPERFAMILY SSF52540 319 568 8.2E-72 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS06500 622b6d5ea16a9608477e98ddb39fe6c0 625 Gene3D G3DSA:3.40.50.300 18 295 5.8E-66 T 29-03-2018 AM354_RS06500 622b6d5ea16a9608477e98ddb39fe6c0 625 Gene3D G3DSA:3.40.50.300 315 601 2.5E-73 T 29-03-2018 AM354_RS06500 622b6d5ea16a9608477e98ddb39fe6c0 625 ProSitePatterns PS00211 ABC transporters family signature. 469 483 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS06500 622b6d5ea16a9608477e98ddb39fe6c0 625 ProSitePatterns PS00211 ABC transporters family signature. 178 192 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS06500 622b6d5ea16a9608477e98ddb39fe6c0 625 SMART SM00382 50 255 5.6E-17 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS06500 622b6d5ea16a9608477e98ddb39fe6c0 625 SMART SM00382 354 546 3.7E-13 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS14770 730ea515882e5884a69d8b7afd0048b1 308 SUPERFAMILY SSF56752 6 306 6.41E-105 T 29-03-2018 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 AM354_RS14770 730ea515882e5884a69d8b7afd0048b1 308 Gene3D G3DSA:3.20.10.10 142 302 6.7E-49 T 29-03-2018 AM354_RS14770 730ea515882e5884a69d8b7afd0048b1 308 Gene3D G3DSA:3.30.470.10 1 141 1.3E-42 T 29-03-2018 AM354_RS14770 730ea515882e5884a69d8b7afd0048b1 308 ProSitePatterns PS00770 Aminotransferases class-IV signature. 193 222 - T 29-03-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824|GO:0008152 Reactome: R-HSA-70895 AM354_RS14770 730ea515882e5884a69d8b7afd0048b1 308 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 9 306 1.8E-144 T 29-03-2018 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767 AM354_RS14770 730ea515882e5884a69d8b7afd0048b1 308 Pfam PF01063 Amino-transferase class IV 35 267 1.4E-49 T 29-03-2018 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 AM354_RS08850 8b8ba87c308c284a8ba738817fdac083 395 Gene3D G3DSA:1.20.1600.10 13 387 1.5E-34 T 29-03-2018 AM354_RS08850 8b8ba87c308c284a8ba738817fdac083 395 SUPERFAMILY SSF111369 54 302 1.57E-89 T 29-03-2018 AM354_RS08850 8b8ba87c308c284a8ba738817fdac083 395 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 42 378 1.9E-83 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AM354_RS08850 8b8ba87c308c284a8ba738817fdac083 395 Pfam PF00529 HlyD membrane-fusion protein of T1SS 97 362 1.9E-12 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AM354_RS08850 8b8ba87c308c284a8ba738817fdac083 395 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 65 295 1.5E-12 T 29-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AM354_RS07010 4ad6e227ef641ac32ef252c4609bc452 253 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 63 208 1.8E-18 T 29-03-2018 AM354_RS07010 4ad6e227ef641ac32ef252c4609bc452 253 SUPERFAMILY SSF53850 64 223 1.13E-15 T 29-03-2018 AM354_RS07010 4ad6e227ef641ac32ef252c4609bc452 253 Gene3D G3DSA:3.40.190.10 81 188 1.7E-15 T 29-03-2018 AM354_RS09420 7d04d9b07591726f3294a829b3c44cdf 247 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 195 236 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM354_RS09420 7d04d9b07591726f3294a829b3c44cdf 247 SUPERFAMILY SSF46689 198 240 6.27E-7 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS09420 7d04d9b07591726f3294a829b3c44cdf 247 Pfam PF12833 Helix-turn-helix domain 165 240 8.5E-19 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS09420 7d04d9b07591726f3294a829b3c44cdf 247 Gene3D G3DSA:1.10.10.60 157 199 2.8E-9 T 29-03-2018 AM354_RS09420 7d04d9b07591726f3294a829b3c44cdf 247 SUPERFAMILY SSF51182 15 174 2.49E-16 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS09420 7d04d9b07591726f3294a829b3c44cdf 247 SMART SM00342 158 240 2.2E-21 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS09420 7d04d9b07591726f3294a829b3c44cdf 247 Gene3D G3DSA:1.10.10.60 200 247 3.1E-8 T 29-03-2018 AM354_RS09420 7d04d9b07591726f3294a829b3c44cdf 247 Pfam PF02311 AraC-like ligand binding domain 10 66 8.8E-6 T 29-03-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AM354_RS09420 7d04d9b07591726f3294a829b3c44cdf 247 Gene3D G3DSA:2.60.120.280 1 156 9.6E-12 T 29-03-2018 AM354_RS03475 17eb3ceb175b0fbbd0b27287f2e0ea41 286 Pfam PF00950 ABC 3 transport family 10 265 6.0E-89 T 29-03-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 AM354_RS03475 17eb3ceb175b0fbbd0b27287f2e0ea41 286 Gene3D G3DSA:1.10.3470.10 3 273 4.0E-28 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS03475 17eb3ceb175b0fbbd0b27287f2e0ea41 286 SUPERFAMILY SSF81345 3 261 2.35E-38 T 29-03-2018 IPR029022 ABC transporter, BtuC-like AM354_RS09865 b80bff0ba41325874075ca0abfaba055 818 Pfam PF09317 Domain of unknown function (DUF1974) 514 792 2.8E-119 T 29-03-2018 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type GO:0003995|GO:0033539|GO:0055114 AM354_RS09865 b80bff0ba41325874075ca0abfaba055 818 Gene3D G3DSA:1.20.140.10 353 508 1.6E-20 T 29-03-2018 AM354_RS09865 b80bff0ba41325874075ca0abfaba055 818 SUPERFAMILY SSF47203 360 515 1.93E-22 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AM354_RS09865 b80bff0ba41325874075ca0abfaba055 818 Gene3D G3DSA:2.40.110.10 236 352 8.7E-17 T 29-03-2018 AM354_RS09865 b80bff0ba41325874075ca0abfaba055 818 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 360 503 2.1E-13 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AM354_RS09865 b80bff0ba41325874075ca0abfaba055 818 Gene3D G3DSA:1.10.540.10 75 235 1.6E-31 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AM354_RS09865 b80bff0ba41325874075ca0abfaba055 818 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 237 327 2.3E-8 T 29-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AM354_RS09865 b80bff0ba41325874075ca0abfaba055 818 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 146 233 2.4E-17 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AM354_RS09865 b80bff0ba41325874075ca0abfaba055 818 SUPERFAMILY SSF56645 120 355 2.62E-46 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AM354_RS23435 ca738881bb9fb9ca5fcec990ad4ea765 234 SMART SM00232 1 124 1.2E-16 T 29-03-2018 IPR000555 JAB1/MPN/MOV34 metalloenzyme domain GO:0005515 AM354_RS23435 ca738881bb9fb9ca5fcec990ad4ea765 234 Pfam PF14464 Prokaryotic homologs of the JAB domain 3 98 3.3E-17 T 29-03-2018 IPR028090 JAB domain, prokaryotic AM354_RS23435 ca738881bb9fb9ca5fcec990ad4ea765 234 Gene3D G3DSA:3.40.140.10 1 119 1.5E-16 T 29-03-2018 AM354_RS23435 ca738881bb9fb9ca5fcec990ad4ea765 234 Pfam PF00877 NlpC/P60 family 116 229 1.9E-17 T 29-03-2018 IPR000064 Endopeptidase, NLPC/P60 domain AM354_RS23435 ca738881bb9fb9ca5fcec990ad4ea765 234 SUPERFAMILY SSF54001 113 231 4.61E-15 T 29-03-2018 AM354_RS23435 ca738881bb9fb9ca5fcec990ad4ea765 234 SUPERFAMILY SSF102712 2 103 4.71E-21 T 29-03-2018 AM354_RS01430 72cb96b31d8cacfe7162a0f00da0b8ac 131 SUPERFAMILY SSF50475 4 120 9.82E-13 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 AM354_RS01430 72cb96b31d8cacfe7162a0f00da0b8ac 131 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 5 85 1.9E-10 T 29-03-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AM354_RS01430 72cb96b31d8cacfe7162a0f00da0b8ac 131 Gene3D G3DSA:2.30.110.10 1 120 1.0E-13 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 AM354_RS23260 3f38644f7f506adbcd2d25902f65044e 179 Pfam PF07437 YfaZ precursor 1 179 2.0E-70 T 29-03-2018 IPR009998 YfaZ AM354_RS23260 3f38644f7f506adbcd2d25902f65044e 179 Gene3D G3DSA:2.40.128.130 10 132 2.0E-6 T 29-03-2018 AM354_RS23260 3f38644f7f506adbcd2d25902f65044e 179 SUPERFAMILY SSF56925 31 179 1.45E-5 T 29-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AM354_RS23260 3f38644f7f506adbcd2d25902f65044e 179 Gene3D G3DSA:2.40.128.90 133 177 0.17 T 29-03-2018 AM354_RS22105 9ba4d87d3bb683bb1e2b88151523c25e 375 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 61 70 - T 29-03-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 AM354_RS22105 9ba4d87d3bb683bb1e2b88151523c25e 375 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 6 373 6.0E-179 T 29-03-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 AM354_RS22105 9ba4d87d3bb683bb1e2b88151523c25e 375 Pfam PF07687 Peptidase dimerisation domain 175 282 1.9E-24 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain AM354_RS22105 9ba4d87d3bb683bb1e2b88151523c25e 375 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 3 375 52.873 T 29-03-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 AM354_RS22105 9ba4d87d3bb683bb1e2b88151523c25e 375 SUPERFAMILY SSF53187 292 373 1.55E-64 T 29-03-2018 AM354_RS22105 9ba4d87d3bb683bb1e2b88151523c25e 375 SUPERFAMILY SSF53187 5 178 1.55E-64 T 29-03-2018 AM354_RS22105 9ba4d87d3bb683bb1e2b88151523c25e 375 Gene3D G3DSA:3.40.630.10 2 280 1.2E-62 T 29-03-2018 AM354_RS22105 9ba4d87d3bb683bb1e2b88151523c25e 375 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 97 136 - T 29-03-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 AM354_RS22105 9ba4d87d3bb683bb1e2b88151523c25e 375 Pfam PF01546 Peptidase family M20/M25/M40 62 371 6.4E-45 T 29-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AM354_RS22105 9ba4d87d3bb683bb1e2b88151523c25e 375 SUPERFAMILY SSF55031 179 288 2.99E-29 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain AM354_RS16690 c19f8c0c1297fc9b9cee9abf4cae2750 644 SUPERFAMILY SSF55073 231 385 5.57E-20 T 29-03-2018 IPR029787 Nucleotide cyclase AM354_RS16690 c19f8c0c1297fc9b9cee9abf4cae2750 644 SMART SM00267 214 383 2.8E-20 T 29-03-2018 IPR000160 GGDEF domain AM354_RS16690 c19f8c0c1297fc9b9cee9abf4cae2750 644 Gene3D G3DSA:3.20.20.450 387 644 1.7E-44 T 29-03-2018 IPR001633 EAL domain AM354_RS16690 c19f8c0c1297fc9b9cee9abf4cae2750 644 Gene3D G3DSA:3.30.70.270 218 386 8.0E-24 T 29-03-2018 AM354_RS16690 c19f8c0c1297fc9b9cee9abf4cae2750 644 Pfam PF17157 Gammaproteobacterial periplasmic sensor domain 34 130 4.3E-27 T 29-03-2018 IPR033423 Gammaproteobacterial periplasmic sensor domain GAPES4 AM354_RS16690 c19f8c0c1297fc9b9cee9abf4cae2750 644 SUPERFAMILY SSF141868 400 638 1.7E-36 T 29-03-2018 IPR001633 EAL domain AM354_RS16690 c19f8c0c1297fc9b9cee9abf4cae2750 644 Pfam PF00990 Diguanylate cyclase, GGDEF domain 225 378 1.4E-22 T 29-03-2018 IPR000160 GGDEF domain AM354_RS16690 c19f8c0c1297fc9b9cee9abf4cae2750 644 SMART SM00052 393 633 1.4E-35 T 29-03-2018 IPR001633 EAL domain AM354_RS16690 c19f8c0c1297fc9b9cee9abf4cae2750 644 Pfam PF00563 EAL domain 403 628 2.3E-39 T 29-03-2018 IPR001633 EAL domain AM354_RS05070 e3afd03e6b7094ea433eafcf6d478d94 500 Gene3D G3DSA:1.20.1250.20 237 490 5.1E-31 T 29-03-2018 AM354_RS05070 e3afd03e6b7094ea433eafcf6d478d94 500 ProSitePatterns PS00216 Sugar transport proteins signature 1. 316 333 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM354_RS05070 e3afd03e6b7094ea433eafcf6d478d94 500 SUPERFAMILY SSF103661 466 498 5.49E-11 T 29-03-2018 IPR015041 Osmosensory transporter coiled coil AM354_RS05070 e3afd03e6b7094ea433eafcf6d478d94 500 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 34 433 9.7E-142 T 29-03-2018 IPR004736 Citrate-proton symport GO:0005215|GO:0006810|GO:0016021 AM354_RS05070 e3afd03e6b7094ea433eafcf6d478d94 500 SUPERFAMILY SSF103473 25 446 1.44E-72 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS05070 e3afd03e6b7094ea433eafcf6d478d94 500 Pfam PF08946 Osmosensory transporter coiled coil 455 500 1.6E-22 T 29-03-2018 IPR015041 Osmosensory transporter coiled coil AM354_RS05070 e3afd03e6b7094ea433eafcf6d478d94 500 Pfam PF00083 Sugar (and other) transporter 29 448 4.3E-66 T 29-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AM354_RS05070 e3afd03e6b7094ea433eafcf6d478d94 500 Gene3D G3DSA:1.20.1250.20 24 236 4.7E-24 T 29-03-2018 AM354_RS19290 fb3afdfb0fb4dcbdd08513d556247c90 338 Hamap MF_01640 D-erythrose-4-phosphate dehydrogenase [epd]. 2 337 64.649 T 29-03-2018 IPR006422 D-erythrose-4-phosphate dehydrogenase GO:0005737|GO:0042823|GO:0048001|GO:0051287|GO:0055114 KEGG: 00750+1.2.1.72 AM354_RS19290 fb3afdfb0fb4dcbdd08513d556247c90 338 SMART SM00846 3 155 2.1E-79 T 29-03-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS19290 fb3afdfb0fb4dcbdd08513d556247c90 338 Gene3D G3DSA:3.40.50.720 1 164 3.9E-63 T 29-03-2018 AM354_RS19290 fb3afdfb0fb4dcbdd08513d556247c90 338 PIRSF PIRSF000149 1 337 1.1E-129 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS19290 fb3afdfb0fb4dcbdd08513d556247c90 338 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 160 316 3.6E-52 T 29-03-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS19290 fb3afdfb0fb4dcbdd08513d556247c90 338 SUPERFAMILY SSF51735 1 174 2.21E-53 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS19290 fb3afdfb0fb4dcbdd08513d556247c90 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 232 249 1.6E-29 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS19290 fb3afdfb0fb4dcbdd08513d556247c90 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 272 287 1.6E-29 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS19290 fb3afdfb0fb4dcbdd08513d556247c90 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 112 125 1.6E-29 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS19290 fb3afdfb0fb4dcbdd08513d556247c90 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 176 192 1.6E-29 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS19290 fb3afdfb0fb4dcbdd08513d556247c90 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 149 167 1.6E-29 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS19290 fb3afdfb0fb4dcbdd08513d556247c90 338 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 104 3.7E-33 T 29-03-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS19290 fb3afdfb0fb4dcbdd08513d556247c90 338 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 153 160 - T 29-03-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS19290 fb3afdfb0fb4dcbdd08513d556247c90 338 SUPERFAMILY SSF55347 155 317 9.82E-56 T 29-03-2018 AM354_RS19290 fb3afdfb0fb4dcbdd08513d556247c90 338 TIGRFAM TIGR01532 E4PD_g-proteo: erythrose-4-phosphate dehydrogenase 4 328 4.2E-185 T 29-03-2018 IPR006422 D-erythrose-4-phosphate dehydrogenase GO:0005737|GO:0042823|GO:0048001|GO:0051287|GO:0055114 KEGG: 00750+1.2.1.72 AM354_RS19290 fb3afdfb0fb4dcbdd08513d556247c90 338 Gene3D G3DSA:3.30.360.10 165 318 5.4E-50 T 29-03-2018 AM354_RS03180 66942d3ff199e09a141e9eaa468eeadd 470 Gene3D G3DSA:3.40.1380.20 322 470 2.0E-43 T 29-03-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM354_RS03180 66942d3ff199e09a141e9eaa468eeadd 470 Pfam PF00224 Pyruvate kinase, barrel domain 1 341 4.4E-152 T 29-03-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM354_RS03180 66942d3ff199e09a141e9eaa468eeadd 470 ProSitePatterns PS00110 Pyruvate kinase active site signature. 215 227 - T 29-03-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM354_RS03180 66942d3ff199e09a141e9eaa468eeadd 470 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 2 469 2.1E-187 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM354_RS03180 66942d3ff199e09a141e9eaa468eeadd 470 Pfam PF02887 Pyruvate kinase, alpha/beta domain 356 468 3.3E-28 T 29-03-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM354_RS03180 66942d3ff199e09a141e9eaa468eeadd 470 Gene3D G3DSA:2.40.33.10 110 160 5.6E-24 T 29-03-2018 AM354_RS03180 66942d3ff199e09a141e9eaa468eeadd 470 Gene3D G3DSA:3.20.20.60 161 321 1.2E-65 T 29-03-2018 AM354_RS03180 66942d3ff199e09a141e9eaa468eeadd 470 PRINTS PR01050 Pyruvate kinase family signature 186 200 2.0E-77 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM354_RS03180 66942d3ff199e09a141e9eaa468eeadd 470 PRINTS PR01050 Pyruvate kinase family signature 313 329 2.0E-77 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM354_RS03180 66942d3ff199e09a141e9eaa468eeadd 470 PRINTS PR01050 Pyruvate kinase family signature 294 312 2.0E-77 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM354_RS03180 66942d3ff199e09a141e9eaa468eeadd 470 PRINTS PR01050 Pyruvate kinase family signature 244 268 2.0E-77 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM354_RS03180 66942d3ff199e09a141e9eaa468eeadd 470 PRINTS PR01050 Pyruvate kinase family signature 217 243 2.0E-77 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM354_RS03180 66942d3ff199e09a141e9eaa468eeadd 470 PRINTS PR01050 Pyruvate kinase family signature 59 75 2.0E-77 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM354_RS03180 66942d3ff199e09a141e9eaa468eeadd 470 PRINTS PR01050 Pyruvate kinase family signature 269 293 2.0E-77 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM354_RS03180 66942d3ff199e09a141e9eaa468eeadd 470 Gene3D G3DSA:3.20.20.60 1 109 1.0E-18 T 29-03-2018 AM354_RS03180 66942d3ff199e09a141e9eaa468eeadd 470 SUPERFAMILY SSF51621 1 74 7.33E-101 T 29-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AM354_RS03180 66942d3ff199e09a141e9eaa468eeadd 470 SUPERFAMILY SSF51621 156 338 7.33E-101 T 29-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AM354_RS03180 66942d3ff199e09a141e9eaa468eeadd 470 SUPERFAMILY SSF52935 323 469 2.35E-35 T 29-03-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM354_RS03180 66942d3ff199e09a141e9eaa468eeadd 470 SUPERFAMILY SSF50800 70 167 2.97E-29 T 29-03-2018 IPR011037 Pyruvate kinase-like, insert domain AM354_RS16065 819dbc63ba2530364d745f0f724fd73a 179 ProSitePatterns PS00358 Ribosomal protein L5 signature. 57 73 - T 29-03-2018 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16065 819dbc63ba2530364d745f0f724fd73a 179 Pfam PF00673 ribosomal L5P family C-terminus 84 177 1.9E-41 T 29-03-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16065 819dbc63ba2530364d745f0f724fd73a 179 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 179 45.041 T 29-03-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS16065 819dbc63ba2530364d745f0f724fd73a 179 Pfam PF00281 Ribosomal protein L5 24 80 1.1E-28 T 29-03-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16065 819dbc63ba2530364d745f0f724fd73a 179 PIRSF PIRSF002161 1 179 2.6E-67 T 29-03-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16065 819dbc63ba2530364d745f0f724fd73a 179 Gene3D G3DSA:3.30.1440.10 1 179 2.8E-81 T 29-03-2018 IPR022803 Ribosomal protein L5 domain Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16065 819dbc63ba2530364d745f0f724fd73a 179 SUPERFAMILY SSF55282 4 179 3.77E-79 T 29-03-2018 IPR022803 Ribosomal protein L5 domain Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS08935 d8c161d69a39ec42f5a4fbb2d231ca6e 203 Pfam PF07963 Prokaryotic N-terminal methylation motif 5 29 1.3E-7 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site AM354_RS08935 d8c161d69a39ec42f5a4fbb2d231ca6e 203 SUPERFAMILY SSF54523 40 199 1.83E-37 T 29-03-2018 AM354_RS08935 d8c161d69a39ec42f5a4fbb2d231ca6e 203 Gene3D G3DSA:3.10.610.10 39 149 1.3E-24 T 29-03-2018 AM354_RS08935 d8c161d69a39ec42f5a4fbb2d231ca6e 203 Pfam PF11612 Type II secretion system (T2SS), protein J 60 194 2.0E-27 T 29-03-2018 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 AM354_RS08935 d8c161d69a39ec42f5a4fbb2d231ca6e 203 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 29 1.3E-6 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site AM354_RS08935 d8c161d69a39ec42f5a4fbb2d231ca6e 203 Gene3D G3DSA:2.10.70.20 153 201 1.1E-12 T 29-03-2018 AM354_RS08935 d8c161d69a39ec42f5a4fbb2d231ca6e 203 TIGRFAM TIGR01711 gspJ: type II secretion system protein J 8 195 1.9E-45 T 29-03-2018 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 AM354_RS09485 d7af967af03bc44ca277ef8b34e97922 182 SUPERFAMILY SSF55729 10 162 2.21E-31 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS09485 d7af967af03bc44ca277ef8b34e97922 182 Gene3D G3DSA:3.40.630.30 2 182 5.2E-22 T 29-03-2018 AM354_RS09485 d7af967af03bc44ca277ef8b34e97922 182 Pfam PF13302 Acetyltransferase (GNAT) domain 14 156 6.0E-27 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS22005 d2fe33f8cd6e61c5fba6256f745982a8 489 Gene3D G3DSA:1.25.40.10 392 461 6.0E-5 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS22005 d2fe33f8cd6e61c5fba6256f745982a8 489 Pfam PF14559 Tetratricopeptide repeat 355 420 1.2E-10 T 29-03-2018 AM354_RS22005 d2fe33f8cd6e61c5fba6256f745982a8 489 Pfam PF01435 Peptidase family M48 74 260 4.9E-28 T 29-03-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AM354_RS22005 d2fe33f8cd6e61c5fba6256f745982a8 489 Hamap MF_00997 Beta-barrel assembly-enhancing protease [bepA]. 5 486 40.38 T 29-03-2018 IPR030873 Beta-barrel assembly-enhancing protease GO:0006508|GO:0008237|GO:0016020|GO:0061077 AM354_RS22005 d2fe33f8cd6e61c5fba6256f745982a8 489 Gene3D G3DSA:1.25.40.10 294 391 1.6E-9 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS22005 d2fe33f8cd6e61c5fba6256f745982a8 489 Gene3D G3DSA:3.30.2010.10 63 155 4.5E-17 T 29-03-2018 AM354_RS22005 d2fe33f8cd6e61c5fba6256f745982a8 489 SUPERFAMILY SSF48452 310 458 3.35E-11 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS08795 fad4659046718e4300e9e59a2fc2924c 214 SUPERFAMILY SSF52540 1 188 7.38E-45 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS08795 fad4659046718e4300e9e59a2fc2924c 214 Gene3D G3DSA:3.40.50.300 1 214 2.0E-68 T 29-03-2018 AM354_RS08795 fad4659046718e4300e9e59a2fc2924c 214 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 29-03-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AM354_RS08795 fad4659046718e4300e9e59a2fc2924c 214 PRINTS PR00094 Adenylate kinase signature 81 97 7.4E-36 T 29-03-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AM354_RS08795 fad4659046718e4300e9e59a2fc2924c 214 PRINTS PR00094 Adenylate kinase signature 4 17 7.4E-36 T 29-03-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AM354_RS08795 fad4659046718e4300e9e59a2fc2924c 214 PRINTS PR00094 Adenylate kinase signature 173 187 7.4E-36 T 29-03-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AM354_RS08795 fad4659046718e4300e9e59a2fc2924c 214 PRINTS PR00094 Adenylate kinase signature 32 46 7.4E-36 T 29-03-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AM354_RS08795 fad4659046718e4300e9e59a2fc2924c 214 PRINTS PR00094 Adenylate kinase signature 156 171 7.4E-36 T 29-03-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AM354_RS08795 fad4659046718e4300e9e59a2fc2924c 214 Pfam PF05191 Adenylate kinase, active site lid 123 158 3.7E-16 T 29-03-2018 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 AM354_RS08795 fad4659046718e4300e9e59a2fc2924c 214 Pfam PF00406 Adenylate kinase 5 186 5.2E-61 T 29-03-2018 AM354_RS08795 fad4659046718e4300e9e59a2fc2924c 214 TIGRFAM TIGR01351 adk: adenylate kinase 2 213 4.4E-76 T 29-03-2018 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 AM354_RS08795 fad4659046718e4300e9e59a2fc2924c 214 Hamap MF_00235 Adenylate kinase [adk]. 1 214 53.204 T 29-03-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AM354_RS04185 38747db2970294fa9649567159eeaf74 456 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 12 455 2.1E-152 T 29-03-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AM354_RS04185 38747db2970294fa9649567159eeaf74 456 Gene3D G3DSA:1.10.40.30 391 445 2.0E-31 T 29-03-2018 AM354_RS04185 38747db2970294fa9649567159eeaf74 456 Gene3D G3DSA:1.20.200.10 118 390 1.0E-82 T 29-03-2018 AM354_RS04185 38747db2970294fa9649567159eeaf74 456 PRINTS PR00149 Fumarate lyase superfamily signature 294 310 4.7E-17 T 29-03-2018 IPR000362 Fumarate lyase family AM354_RS04185 38747db2970294fa9649567159eeaf74 456 PRINTS PR00149 Fumarate lyase superfamily signature 251 278 4.7E-17 T 29-03-2018 IPR000362 Fumarate lyase family AM354_RS04185 38747db2970294fa9649567159eeaf74 456 PRINTS PR00149 Fumarate lyase superfamily signature 117 135 4.7E-17 T 29-03-2018 IPR000362 Fumarate lyase family AM354_RS04185 38747db2970294fa9649567159eeaf74 456 PRINTS PR00149 Fumarate lyase superfamily signature 163 181 4.7E-17 T 29-03-2018 IPR000362 Fumarate lyase family AM354_RS04185 38747db2970294fa9649567159eeaf74 456 Gene3D G3DSA:1.10.275.10 1 117 7.3E-44 T 29-03-2018 IPR024083 Fumarase/histidase, N-terminal AM354_RS04185 38747db2970294fa9649567159eeaf74 456 SUPERFAMILY SSF48557 10 454 1.23E-106 T 29-03-2018 IPR008948 L-Aspartase-like GO:0003824 AM354_RS04185 38747db2970294fa9649567159eeaf74 456 Pfam PF00206 Lyase 14 312 5.4E-78 T 29-03-2018 IPR022761 Fumarate lyase, N-terminal AM354_RS04185 38747db2970294fa9649567159eeaf74 456 Pfam PF08328 Adenylosuccinate lyase C-terminal 331 445 2.9E-52 T 29-03-2018 IPR013539 Adenylosuccinate lyase PurB, C-terminal GO:0004018|GO:0006188 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234 AM354_RS04185 38747db2970294fa9649567159eeaf74 456 ProSitePatterns PS00163 Fumarate lyases signature. 294 303 - T 29-03-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 AM354_RS26000 d4b55add7f5f2d0fc303f91b51000605 333 Pfam PF00535 Glycosyl transferase family 2 6 131 7.2E-33 T 29-03-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AM354_RS26000 d4b55add7f5f2d0fc303f91b51000605 333 Gene3D G3DSA:3.90.550.10 4 316 3.8E-50 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS26000 d4b55add7f5f2d0fc303f91b51000605 333 SUPERFAMILY SSF53448 5 226 4.69E-50 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS23080 99389f914f0141fec31392493596241f 719 Pfam PF13500 AAA domain 3 229 2.0E-51 T 29-03-2018 AM354_RS23080 99389f914f0141fec31392493596241f 719 Gene3D G3DSA:3.40.1390.20 234 366 3.3E-28 T 29-03-2018 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like AM354_RS23080 99389f914f0141fec31392493596241f 719 Pfam PF07085 DRTGG domain 233 344 6.7E-29 T 29-03-2018 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AM354_RS23080 99389f914f0141fec31392493596241f 719 SUPERFAMILY SSF53659 392 709 7.4E-94 T 29-03-2018 AM354_RS23080 99389f914f0141fec31392493596241f 719 Gene3D G3DSA:3.40.50.300 1 233 8.2E-28 T 29-03-2018 AM354_RS23080 99389f914f0141fec31392493596241f 719 Gene3D G3DSA:3.40.718.10 409 693 2.5E-64 T 29-03-2018 AM354_RS23080 99389f914f0141fec31392493596241f 719 SUPERFAMILY SSF52540 3 240 1.22E-27 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS23080 99389f914f0141fec31392493596241f 719 SUPERFAMILY SSF75138 229 353 7.85E-26 T 29-03-2018 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like AM354_RS23080 99389f914f0141fec31392493596241f 719 PIRSF PIRSF006107 1 714 0.0 T 29-03-2018 IPR016475 Phosphate acetyltransferase, bacteria GO:0008959 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AM354_RS23080 99389f914f0141fec31392493596241f 719 Pfam PF01515 Phosphate acetyl/butaryl transferase 391 706 5.0E-127 T 29-03-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AM354_RS23080 99389f914f0141fec31392493596241f 719 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 406 706 3.8E-136 T 29-03-2018 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AM354_RS06980 eec8d06d02ed8ab46b6a1800826dff62 484 PRINTS PR01035 Tetracycline resistance protein signature 144 166 6.2E-5 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AM354_RS06980 eec8d06d02ed8ab46b6a1800826dff62 484 PRINTS PR01035 Tetracycline resistance protein signature 30 46 6.2E-5 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AM354_RS06980 eec8d06d02ed8ab46b6a1800826dff62 484 PRINTS PR01035 Tetracycline resistance protein signature 265 285 6.2E-5 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AM354_RS06980 eec8d06d02ed8ab46b6a1800826dff62 484 Gene3D G3DSA:1.20.1250.20 262 470 2.1E-9 T 29-03-2018 AM354_RS06980 eec8d06d02ed8ab46b6a1800826dff62 484 Gene3D G3DSA:1.20.1250.20 13 205 1.6E-26 T 29-03-2018 AM354_RS06980 eec8d06d02ed8ab46b6a1800826dff62 484 Pfam PF07690 Major Facilitator Superfamily 25 403 2.0E-30 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS06980 eec8d06d02ed8ab46b6a1800826dff62 484 SUPERFAMILY SSF103473 6 200 3.4E-39 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS06980 eec8d06d02ed8ab46b6a1800826dff62 484 SUPERFAMILY SSF103473 249 460 3.4E-39 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS21870 78a1228601a06ca1ace319150d0361bb 477 Gene3D G3DSA:3.10.580.10 149 293 1.5E-17 T 29-03-2018 AM354_RS21870 78a1228601a06ca1ace319150d0361bb 477 Pfam PF03448 MgtE intracellular N domain 61 162 2.5E-22 T 29-03-2018 IPR006668 Magnesium transporter, MgtE intracellular domain AM354_RS21870 78a1228601a06ca1ace319150d0361bb 477 Pfam PF00571 CBS domain 228 282 1.3E-6 T 29-03-2018 IPR000644 CBS domain AM354_RS21870 78a1228601a06ca1ace319150d0361bb 477 SUPERFAMILY SSF158791 51 159 1.7E-22 T 29-03-2018 AM354_RS21870 78a1228601a06ca1ace319150d0361bb 477 TIGRFAM TIGR00400 mgtE: magnesium transporter 51 476 2.2E-78 T 29-03-2018 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 AM354_RS21870 78a1228601a06ca1ace319150d0361bb 477 SUPERFAMILY SSF161093 305 476 1.57E-48 T 29-03-2018 AM354_RS21870 78a1228601a06ca1ace319150d0361bb 477 SUPERFAMILY SSF54631 164 303 6.86E-26 T 29-03-2018 AM354_RS21870 78a1228601a06ca1ace319150d0361bb 477 SMART SM00116 235 283 0.0063 T 29-03-2018 IPR000644 CBS domain AM354_RS21870 78a1228601a06ca1ace319150d0361bb 477 Gene3D G3DSA:1.10.357.20 304 477 8.5E-34 T 29-03-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 AM354_RS21870 78a1228601a06ca1ace319150d0361bb 477 Gene3D G3DSA:1.25.60.10 37 148 1.3E-16 T 29-03-2018 AM354_RS21870 78a1228601a06ca1ace319150d0361bb 477 Pfam PF01769 Divalent cation transporter 348 469 1.9E-24 T 29-03-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 AM354_RS21870 78a1228601a06ca1ace319150d0361bb 477 SMART SM00924 61 164 2.1E-31 T 29-03-2018 IPR006668 Magnesium transporter, MgtE intracellular domain AM354_RS11355 1c6f605b699cd9f4a88edd053dda769e 309 SUPERFAMILY SSF53850 101 305 1.1E-19 T 29-03-2018 AM354_RS11355 1c6f605b699cd9f4a88edd053dda769e 309 Gene3D G3DSA:1.10.10.10 11 105 7.9E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS11355 1c6f605b699cd9f4a88edd053dda769e 309 Pfam PF03466 LysR substrate binding domain 101 305 1.6E-20 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS11355 1c6f605b699cd9f4a88edd053dda769e 309 Gene3D G3DSA:3.40.190.10 106 234 1.2E-13 T 29-03-2018 AM354_RS11355 1c6f605b699cd9f4a88edd053dda769e 309 SUPERFAMILY SSF46785 15 100 1.74E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS11355 1c6f605b699cd9f4a88edd053dda769e 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 17 75 5.1E-15 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS24590 ba905969bd0ac0d4b0df2f9b058de921 131 SUPERFAMILY SSF51182 6 130 5.63E-34 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS24590 ba905969bd0ac0d4b0df2f9b058de921 131 Gene3D G3DSA:2.60.120.10 1 131 6.6E-32 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS24590 ba905969bd0ac0d4b0df2f9b058de921 131 Pfam PF07883 Cupin domain 41 105 2.8E-13 T 29-03-2018 IPR013096 Cupin 2, conserved barrel AM354_RS04220 c3d924281427fcd187998ec65c551ea7 485 SUPERFAMILY SSF47384 247 329 1.0E-5 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS04220 c3d924281427fcd187998ec65c551ea7 485 PRINTS PR00344 Bacterial sensor protein C-terminal signature 439 457 8.4E-8 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS04220 c3d924281427fcd187998ec65c551ea7 485 PRINTS PR00344 Bacterial sensor protein C-terminal signature 408 422 8.4E-8 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS04220 c3d924281427fcd187998ec65c551ea7 485 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 375 475 2.5E-12 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS04220 c3d924281427fcd187998ec65c551ea7 485 SMART SM00388 264 328 0.0041 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS04220 c3d924281427fcd187998ec65c551ea7 485 Pfam PF08918 PhoQ Sensor 8 185 1.6E-90 T 29-03-2018 IPR015014 PhoQ Sensor GO:0000160|GO:0004673|GO:0005524|GO:0016020|GO:0018106|GO:0046872 AM354_RS04220 c3d924281427fcd187998ec65c551ea7 485 SMART SM00387 373 479 1.1E-22 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS04220 c3d924281427fcd187998ec65c551ea7 485 SUPERFAMILY SSF55874 320 477 2.62E-30 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS04220 c3d924281427fcd187998ec65c551ea7 485 Gene3D G3DSA:3.30.565.10 334 485 4.2E-30 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS21735 112ef6e7e21878de9f76935fc1782279 323 Gene3D G3DSA:3.10.580.10 197 322 4.1E-20 T 29-03-2018 AM354_RS21735 112ef6e7e21878de9f76935fc1782279 323 SUPERFAMILY SSF53697 11 258 5.56E-59 T 29-03-2018 AM354_RS21735 112ef6e7e21878de9f76935fc1782279 323 Pfam PF01380 SIS domain 41 171 1.6E-32 T 29-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AM354_RS21735 112ef6e7e21878de9f76935fc1782279 323 Pfam PF00571 CBS domain 278 317 0.0017 T 29-03-2018 IPR000644 CBS domain AM354_RS21735 112ef6e7e21878de9f76935fc1782279 323 Pfam PF00571 CBS domain 201 258 3.8E-5 T 29-03-2018 IPR000644 CBS domain AM354_RS21735 112ef6e7e21878de9f76935fc1782279 323 SMART SM00116 210 258 1.1 T 29-03-2018 IPR000644 CBS domain AM354_RS21735 112ef6e7e21878de9f76935fc1782279 323 SMART SM00116 274 322 4.6 T 29-03-2018 IPR000644 CBS domain AM354_RS21735 112ef6e7e21878de9f76935fc1782279 323 SUPERFAMILY SSF54631 267 320 2.65E-6 T 29-03-2018 AM354_RS21735 112ef6e7e21878de9f76935fc1782279 323 Gene3D G3DSA:3.40.50.10490 1 196 3.6E-53 T 29-03-2018 AM354_RS21735 112ef6e7e21878de9f76935fc1782279 323 PIRSF PIRSF004692 1 323 1.2E-118 T 29-03-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 AM354_RS21735 112ef6e7e21878de9f76935fc1782279 323 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 45 313 1.6E-114 T 29-03-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 AM354_RS16370 248fc5b3e674ceeee10d5fba41f93dcb 602 Pfam PF00999 Sodium/hydrogen exchanger family 10 390 5.8E-38 T 29-03-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AM354_RS16370 248fc5b3e674ceeee10d5fba41f93dcb 602 SUPERFAMILY SSF51735 402 495 6.43E-11 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS16370 248fc5b3e674ceeee10d5fba41f93dcb 602 Gene3D G3DSA:3.40.50.720 393 536 3.1E-6 T 29-03-2018 AM354_RS16370 248fc5b3e674ceeee10d5fba41f93dcb 602 Pfam PF02254 TrkA-N domain 402 494 5.8E-8 T 29-03-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 AM354_RS01015 a9e3abb6f477864f7f251a94e453dfcd 299 SUPERFAMILY SSF54862 15 157 5.66E-8 T 29-03-2018 AM354_RS01015 a9e3abb6f477864f7f251a94e453dfcd 299 PIRSF PIRSF000371 1 297 6.3E-91 T 29-03-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 AM354_RS01015 a9e3abb6f477864f7f251a94e453dfcd 299 TIGRFAM TIGR02494 PFLE_PFLC: glycyl-radical enzyme activating protein 3 286 1.1E-100 T 29-03-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 AM354_RS01015 a9e3abb6f477864f7f251a94e453dfcd 299 ProSitePatterns PS01087 Radical activating enzymes signature. 13 34 - T 29-03-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 AM354_RS01015 a9e3abb6f477864f7f251a94e453dfcd 299 Pfam PF13353 4Fe-4S single cluster domain 12 154 4.2E-11 T 29-03-2018 AM354_RS01015 a9e3abb6f477864f7f251a94e453dfcd 299 Gene3D G3DSA:3.80.30.10 121 295 6.8E-31 T 29-03-2018 AM354_RS01015 a9e3abb6f477864f7f251a94e453dfcd 299 SUPERFAMILY SSF102114 126 264 1.94E-18 T 29-03-2018 AM354_RS01015 a9e3abb6f477864f7f251a94e453dfcd 299 Pfam PF04055 Radical SAM superfamily 19 228 5.4E-26 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AM354_RS22090 62034b83d2c361f943d7b2f6fd440e64 229 Pfam PF02230 Phospholipase/Carboxylesterase 4 206 6.3E-38 T 29-03-2018 IPR003140 Phospholipase/carboxylesterase/thioesterase GO:0016787 AM354_RS22090 62034b83d2c361f943d7b2f6fd440e64 229 Gene3D G3DSA:3.40.50.1820 1 218 2.2E-21 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS22090 62034b83d2c361f943d7b2f6fd440e64 229 SUPERFAMILY SSF53474 5 205 4.79E-30 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS07610 e8ae273f44da9b5e12f82cc68289a85a 513 Gene3D G3DSA:3.30.565.10 340 507 5.3E-24 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS07610 e8ae273f44da9b5e12f82cc68289a85a 513 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 423 506 3.1E-7 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS07610 e8ae273f44da9b5e12f82cc68289a85a 513 Pfam PF05231 MASE1 11 281 1.5E-41 T 29-03-2018 IPR007895 MASE1 AM354_RS07610 e8ae273f44da9b5e12f82cc68289a85a 513 SMART SM00387 419 508 1.3E-10 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS07610 e8ae273f44da9b5e12f82cc68289a85a 513 SUPERFAMILY SSF55874 396 505 1.26E-18 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS07610 e8ae273f44da9b5e12f82cc68289a85a 513 Pfam PF07730 Histidine kinase 316 380 2.8E-14 T 29-03-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AM354_RS25815 e807cdc294a733e323fec9b5977fb1d0 344 TIGRFAM TIGR03243 arg_catab_AOST: arginine and ornithine succinyltransferase subunits 3 338 8.5E-148 T 29-03-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 AM354_RS25815 e807cdc294a733e323fec9b5977fb1d0 344 SUPERFAMILY SSF55729 1 338 3.86E-135 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS25815 e807cdc294a733e323fec9b5977fb1d0 344 Hamap MF_01171 Arginine N-succinyltransferase [astA]. 1 344 73.521 T 29-03-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 AM354_RS25815 e807cdc294a733e323fec9b5977fb1d0 344 Gene3D G3DSA:2.40.40.20 275 338 5.4E-18 T 29-03-2018 AM354_RS25815 e807cdc294a733e323fec9b5977fb1d0 344 Gene3D G3DSA:3.40.630.30 1 274 4.2E-23 T 29-03-2018 AM354_RS25815 e807cdc294a733e323fec9b5977fb1d0 344 TIGRFAM TIGR03244 arg_catab_AstA: arginine N-succinyltransferase 3 338 3.3E-158 T 29-03-2018 IPR017650 Arginine N-succinyltransferase GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 AM354_RS25815 e807cdc294a733e323fec9b5977fb1d0 344 Pfam PF04958 Arginine N-succinyltransferase beta subunit 1 337 3.3E-145 T 29-03-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 AM354_RS21035 90b6b3008f4849a15d89ba176ba864a4 226 Gene3D G3DSA:3.30.160.20 148 226 1.2E-20 T 29-03-2018 AM354_RS21035 90b6b3008f4849a15d89ba176ba864a4 226 Gene3D G3DSA:1.10.1520.10 5 147 3.5E-44 T 29-03-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 AM354_RS21035 90b6b3008f4849a15d89ba176ba864a4 226 ProSitePatterns PS00517 Ribonuclease III family signature. 38 46 - T 29-03-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 AM354_RS21035 90b6b3008f4849a15d89ba176ba864a4 226 SMART SM00535 21 149 5.4E-58 T 29-03-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 AM354_RS21035 90b6b3008f4849a15d89ba176ba864a4 226 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 9 223 1.0E-73 T 29-03-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 AM354_RS21035 90b6b3008f4849a15d89ba176ba864a4 226 Pfam PF14622 Ribonuclease-III-like 20 140 1.8E-33 T 29-03-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 AM354_RS21035 90b6b3008f4849a15d89ba176ba864a4 226 Hamap MF_00104 Ribonuclease 3 [rnc]. 9 220 29.49 T 29-03-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 AM354_RS21035 90b6b3008f4849a15d89ba176ba864a4 226 Pfam PF00035 Double-stranded RNA binding motif 156 223 3.0E-14 T 29-03-2018 IPR014720 Double-stranded RNA-binding domain AM354_RS21035 90b6b3008f4849a15d89ba176ba864a4 226 SUPERFAMILY SSF54768 109 223 6.76E-27 T 29-03-2018 AM354_RS21035 90b6b3008f4849a15d89ba176ba864a4 226 SMART SM00358 156 224 2.0E-23 T 29-03-2018 IPR014720 Double-stranded RNA-binding domain AM354_RS21035 90b6b3008f4849a15d89ba176ba864a4 226 SUPERFAMILY SSF69065 5 159 1.71E-49 T 29-03-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 AM354_RS24935 1a8ef01308bb0263037f39538f2b1cb1 428 SUPERFAMILY SSF56672 1 236 1.16E-68 T 29-03-2018 AM354_RS24935 1a8ef01308bb0263037f39538f2b1cb1 428 Pfam PF11799 impB/mucB/samB family C-terminal domain 243 351 7.4E-14 T 29-03-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AM354_RS24935 1a8ef01308bb0263037f39538f2b1cb1 428 Pfam PF00817 impB/mucB/samB family 5 149 1.3E-35 T 29-03-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AM354_RS24935 1a8ef01308bb0263037f39538f2b1cb1 428 Gene3D G3DSA:1.10.150.20 172 248 4.0E-15 T 29-03-2018 AM354_RS24935 1a8ef01308bb0263037f39538f2b1cb1 428 SUPERFAMILY SSF100879 249 334 3.92E-5 T 29-03-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AM354_RS24935 1a8ef01308bb0263037f39538f2b1cb1 428 Pfam PF13438 Domain of unknown function (DUF4113) 370 419 2.0E-21 T 29-03-2018 IPR025188 Domain of unknown function DUF4113 AM354_RS24935 1a8ef01308bb0263037f39538f2b1cb1 428 Gene3D G3DSA:3.30.1490.100 249 362 6.4E-23 T 29-03-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AM354_RS24935 1a8ef01308bb0263037f39538f2b1cb1 428 Gene3D G3DSA:3.30.70.270 37 113 2.7E-16 T 29-03-2018 AM354_RS24935 1a8ef01308bb0263037f39538f2b1cb1 428 Gene3D G3DSA:3.30.70.270 114 171 1.7E-10 T 29-03-2018 AM354_RS21780 cd375c76f65293809c8cfba3aae35868 301 Gene3D G3DSA:3.40.50.10330 1 135 2.7E-29 T 29-03-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 AM354_RS21780 cd375c76f65293809c8cfba3aae35868 301 TIGRFAM TIGR03702 lip_kinase_YegS: lipid kinase YegS 9 300 2.2E-137 T 29-03-2018 IPR022433 Lipid kinase YegS GO:0001727|GO:0046872 AM354_RS21780 cd375c76f65293809c8cfba3aae35868 301 TIGRFAM TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family 10 295 4.6E-91 T 29-03-2018 IPR005218 Diacylglycerol/lipid kinase AM354_RS21780 cd375c76f65293809c8cfba3aae35868 301 Pfam PF00781 Diacylglycerol kinase catalytic domain 9 131 4.1E-30 T 29-03-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 AM354_RS21780 cd375c76f65293809c8cfba3aae35868 301 SMART SM00046 8 131 1.9E-23 T 29-03-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 AM354_RS21780 cd375c76f65293809c8cfba3aae35868 301 SUPERFAMILY SSF111331 8 297 1.48E-69 T 29-03-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain AM354_RS21780 cd375c76f65293809c8cfba3aae35868 301 Hamap MF_01377 Probable lipid kinase YegS [yegS]. 8 301 45.631 T 29-03-2018 IPR022433 Lipid kinase YegS GO:0001727|GO:0046872 AM354_RS04915 811346a22b346f9003365d9f64a0f458 334 SUPERFAMILY SSF51735 115 285 1.76E-26 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS04915 811346a22b346f9003365d9f64a0f458 334 Pfam PF00107 Zinc-binding dehydrogenase 153 248 2.2E-7 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AM354_RS04915 811346a22b346f9003365d9f64a0f458 334 SMART SM00829 15 318 5.5E-6 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AM354_RS04915 811346a22b346f9003365d9f64a0f458 334 SUPERFAMILY SSF50129 10 145 5.35E-25 T 29-03-2018 IPR011032 GroES-like AM354_RS04915 811346a22b346f9003365d9f64a0f458 334 Gene3D G3DSA:3.90.180.10 1 320 5.1E-43 T 29-03-2018 AM354_RS24325 48193768f0eaf6b8b2217bf0a5692a4a 487 TIGRFAM TIGR01717 AMP-nucleosdse: AMP nucleosidase 13 487 2.2E-234 T 29-03-2018 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 AM354_RS24325 48193768f0eaf6b8b2217bf0a5692a4a 487 Hamap MF_01932 AMP nucleosidase [amn]. 5 487 58.413 T 29-03-2018 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 AM354_RS24325 48193768f0eaf6b8b2217bf0a5692a4a 487 Gene3D G3DSA:3.30.1730.10 8 173 1.9E-53 T 29-03-2018 IPR018953 AMP nucleoside phosphorylase, N-terminal KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 AM354_RS24325 48193768f0eaf6b8b2217bf0a5692a4a 487 Gene3D G3DSA:3.40.50.1580 177 470 2.2E-64 T 29-03-2018 AM354_RS24325 48193768f0eaf6b8b2217bf0a5692a4a 487 Pfam PF10423 Bacterial AMP nucleoside phosphorylase N-terminus 14 169 6.5E-56 T 29-03-2018 IPR018953 AMP nucleoside phosphorylase, N-terminal KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 AM354_RS24325 48193768f0eaf6b8b2217bf0a5692a4a 487 SUPERFAMILY SSF53167 11 487 4.06E-156 T 29-03-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AM354_RS24325 48193768f0eaf6b8b2217bf0a5692a4a 487 Pfam PF01048 Phosphorylase superfamily 272 433 4.0E-19 T 29-03-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 Gene3D G3DSA:3.30.70.100 166 252 2.9E-22 T 29-03-2018 AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 360 866 1.3E-86 T 29-03-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 SUPERFAMILY SSF55008 71 129 4.58E-12 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 SUPERFAMILY SSF81653 391 488 4.58E-24 T 29-03-2018 IPR008250 P-type ATPase, A domain Reactome: R-HSA-936837 AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 ProSitePatterns PS01047 Heavy-metal-associated domain. 9 38 - T 29-03-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 Gene3D G3DSA:3.40.1110.10 616 712 3.7E-30 T 29-03-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 ProSitePatterns PS01229 Hypothetical cof family signature 2. 787 809 - T 29-03-2018 AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 Pfam PF00403 Heavy-metal-associated domain 174 228 7.8E-16 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 Pfam PF00403 Heavy-metal-associated domain 9 61 3.7E-8 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 Pfam PF00403 Heavy-metal-associated domain 73 128 1.4E-7 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 SUPERFAMILY SSF81665 355 392 4.58E-10 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 SUPERFAMILY SSF81665 836 852 4.58E-10 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 SUPERFAMILY SSF81665 489 584 4.58E-10 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 SUPERFAMILY SSF55008 3 65 1.15E-10 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 SUPERFAMILY SSF56784 645 893 7.79E-61 T 29-03-2018 IPR023214 HAD-like domain AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 SUPERFAMILY SSF56784 588 608 7.79E-61 T 29-03-2018 IPR023214 HAD-like domain AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 PRINTS PR00943 Copper-transporting ATPase signature 573 588 2.4E-8 T 29-03-2018 AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 PRINTS PR00943 Copper-transporting ATPase signature 764 781 2.4E-8 T 29-03-2018 AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 PRINTS PR00943 Copper-transporting ATPase signature 860 874 2.4E-8 T 29-03-2018 AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 PRINTS PR00943 Copper-transporting ATPase signature 306 325 2.4E-8 T 29-03-2018 AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 PRINTS PR00943 Copper-transporting ATPase signature 511 525 2.4E-8 T 29-03-2018 AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 PRINTS PR00943 Copper-transporting ATPase signature 378 396 2.4E-8 T 29-03-2018 AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 302 896 2.4E-188 T 29-03-2018 AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 Pfam PF00122 E1-E2 ATPase 389 569 1.0E-49 T 29-03-2018 AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 Pfam PF00702 haloacid dehalogenase-like hydrolase 587 801 6.5E-50 T 29-03-2018 AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 590 604 4.6E-25 T 29-03-2018 AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 712 723 4.6E-25 T 29-03-2018 AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 734 744 4.6E-25 T 29-03-2018 AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 787 806 4.6E-25 T 29-03-2018 AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 810 822 4.6E-25 T 29-03-2018 AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 438 452 4.6E-25 T 29-03-2018 AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 Gene3D G3DSA:3.30.70.100 70 134 1.1E-12 T 29-03-2018 AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 Gene3D G3DSA:3.30.70.100 1 69 1.1E-11 T 29-03-2018 AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 SUPERFAMILY SSF55008 170 235 2.62E-19 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 321 896 2.5E-183 T 29-03-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 592 598 - T 29-03-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 Gene3D G3DSA:3.40.50.1000 713 852 1.6E-48 T 29-03-2018 IPR023214 HAD-like domain AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 Gene3D G3DSA:1.20.1110.10 355 615 9.6E-45 T 29-03-2018 AM354_RS08695 fd61c19371e349e473bd382a080d8b59 903 ProSitePatterns PS01047 Heavy-metal-associated domain. 174 203 - T 29-03-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 AM354_RS04705 82dcf59ea83d7dcb4c52febb414a3f64 1047 SUPERFAMILY SSF82714 729 815 3.53E-18 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS04705 82dcf59ea83d7dcb4c52febb414a3f64 1047 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 3 1045 0.0 T 29-03-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 AM354_RS04705 82dcf59ea83d7dcb4c52febb414a3f64 1047 Gene3D G3DSA:3.30.70.1320 774 852 1.3E-5 T 29-03-2018 AM354_RS04705 82dcf59ea83d7dcb4c52febb414a3f64 1047 Gene3D G3DSA:1.20.1640.10 279 501 2.2E-50 T 29-03-2018 AM354_RS04705 82dcf59ea83d7dcb4c52febb414a3f64 1047 Gene3D G3DSA:1.20.1640.10 853 1038 1.7E-36 T 29-03-2018 AM354_RS04705 82dcf59ea83d7dcb4c52febb414a3f64 1047 SUPERFAMILY SSF82866 812 1037 6.15E-42 T 29-03-2018 AM354_RS04705 82dcf59ea83d7dcb4c52febb414a3f64 1047 SUPERFAMILY SSF82693 277 333 6.98E-27 T 29-03-2018 AM354_RS04705 82dcf59ea83d7dcb4c52febb414a3f64 1047 SUPERFAMILY SSF82693 139 184 6.98E-27 T 29-03-2018 AM354_RS04705 82dcf59ea83d7dcb4c52febb414a3f64 1047 SUPERFAMILY SSF82693 41 134 3.14E-27 T 29-03-2018 AM354_RS04705 82dcf59ea83d7dcb4c52febb414a3f64 1047 SUPERFAMILY SSF82866 299 499 2.22E-50 T 29-03-2018 AM354_RS04705 82dcf59ea83d7dcb4c52febb414a3f64 1047 Gene3D G3DSA:3.30.70.1430 578 678 6.4E-15 T 29-03-2018 AM354_RS04705 82dcf59ea83d7dcb4c52febb414a3f64 1047 Gene3D G3DSA:3.30.70.1440 679 773 5.4E-19 T 29-03-2018 AM354_RS04705 82dcf59ea83d7dcb4c52febb414a3f64 1047 PRINTS PR00702 Acriflavin resistance protein family signature 366 387 1.8E-88 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS04705 82dcf59ea83d7dcb4c52febb414a3f64 1047 PRINTS PR00702 Acriflavin resistance protein family signature 394 418 1.8E-88 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS04705 82dcf59ea83d7dcb4c52febb414a3f64 1047 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 1.8E-88 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS04705 82dcf59ea83d7dcb4c52febb414a3f64 1047 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.8E-88 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS04705 82dcf59ea83d7dcb4c52febb414a3f64 1047 PRINTS PR00702 Acriflavin resistance protein family signature 562 579 1.8E-88 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS04705 82dcf59ea83d7dcb4c52febb414a3f64 1047 PRINTS PR00702 Acriflavin resistance protein family signature 339 362 1.8E-88 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS04705 82dcf59ea83d7dcb4c52febb414a3f64 1047 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 1.8E-88 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS04705 82dcf59ea83d7dcb4c52febb414a3f64 1047 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.8E-88 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS04705 82dcf59ea83d7dcb4c52febb414a3f64 1047 PRINTS PR00702 Acriflavin resistance protein family signature 631 645 1.8E-88 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS04705 82dcf59ea83d7dcb4c52febb414a3f64 1047 Gene3D G3DSA:3.30.70.1430 40 142 5.7E-28 T 29-03-2018 AM354_RS04705 82dcf59ea83d7dcb4c52febb414a3f64 1047 SUPERFAMILY SSF82693 575 678 1.52E-20 T 29-03-2018 AM354_RS04705 82dcf59ea83d7dcb4c52febb414a3f64 1047 SUPERFAMILY SSF82714 185 275 4.05E-22 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS04705 82dcf59ea83d7dcb4c52febb414a3f64 1047 Gene3D G3DSA:3.30.2090.10 183 278 1.0E-18 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS04705 82dcf59ea83d7dcb4c52febb414a3f64 1047 Pfam PF00873 AcrB/AcrD/AcrF family 3 1034 0.0 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS01555 cd60034ceb82e88fcacf2be108dcae66 177 SUPERFAMILY SSF55961 2 177 9.26E-40 T 29-03-2018 AM354_RS01555 cd60034ceb82e88fcacf2be108dcae66 177 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 22 154 1.2E-17 T 29-03-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 AM354_RS01555 cd60034ceb82e88fcacf2be108dcae66 177 Gene3D G3DSA:3.30.530.20 9 177 1.3E-28 T 29-03-2018 IPR023393 START-like domain AM354_RS23630 f8d3316172b40a3d223caca0b597e4eb 140 Pfam PF00293 NUDIX domain 5 127 5.3E-26 T 29-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AM354_RS23630 f8d3316172b40a3d223caca0b597e4eb 140 SUPERFAMILY SSF55811 3 133 3.93E-33 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 AM354_RS23630 f8d3316172b40a3d223caca0b597e4eb 140 Gene3D G3DSA:3.90.79.10 2 133 2.6E-30 T 29-03-2018 AM354_RS23630 f8d3316172b40a3d223caca0b597e4eb 140 ProSitePatterns PS00893 Nudix box signature. 36 57 - T 29-03-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AM354_RS23630 f8d3316172b40a3d223caca0b597e4eb 140 PRINTS PR00502 NUDIX hydrolase family signature 45 60 2.1E-8 T 29-03-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AM354_RS23630 f8d3316172b40a3d223caca0b597e4eb 140 PRINTS PR00502 NUDIX hydrolase family signature 31 45 2.1E-8 T 29-03-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AM354_RS23445 5755050e81baa5679c09a657a2731593 1055 Pfam PF13550 Putative phage tail protein 342 498 5.1E-20 T 29-03-2018 IPR032876 Tip attachment protein J AM354_RS23445 5755050e81baa5679c09a657a2731593 1055 Pfam PF09327 Domain of unknown function (DUF1983) 903 982 7.4E-21 T 29-03-2018 IPR015406 Domain of unknown function DUF1983 AM354_RS23445 5755050e81baa5679c09a657a2731593 1055 Gene3D G3DSA:2.60.40.10 618 816 1.7E-15 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS23445 5755050e81baa5679c09a657a2731593 1055 Gene3D G3DSA:2.60.40.10 106 206 0.56 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS02780 d0c0777cfe7f3c700027014e61e88f9d 312 SUPERFAMILY SSF56596 6 307 5.75E-115 T 29-03-2018 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 AM354_RS02780 d0c0777cfe7f3c700027014e61e88f9d 312 Pfam PF05472 DNA replication terminus site-binding protein (Ter protein) 9 306 1.1E-139 T 29-03-2018 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 AM354_RS02780 d0c0777cfe7f3c700027014e61e88f9d 312 TIGRFAM TIGR02648 rep_term_tus: DNA replication terminus site-binding protein 10 308 2.0E-156 T 29-03-2018 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 AM354_RS02780 d0c0777cfe7f3c700027014e61e88f9d 312 Gene3D G3DSA:3.30.54.10 262 308 1.9E-8 T 29-03-2018 AM354_RS02780 d0c0777cfe7f3c700027014e61e88f9d 312 Gene3D G3DSA:3.30.54.10 186 246 2.8E-30 T 29-03-2018 AM354_RS02780 d0c0777cfe7f3c700027014e61e88f9d 312 Gene3D G3DSA:3.50.14.10 7 185 6.7E-60 T 29-03-2018 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 AM354_RS02780 d0c0777cfe7f3c700027014e61e88f9d 312 Hamap MF_00483 DNA replication terminus site-binding protein [tus]. 1 309 46.996 T 29-03-2018 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 AM354_RS20950 44b794af8cb65430050b8e0485dbe29a 553 Gene3D G3DSA:3.40.50.300 1 212 3.5E-24 T 29-03-2018 AM354_RS20950 44b794af8cb65430050b8e0485dbe29a 553 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 552 1.2E-164 T 29-03-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 AM354_RS20950 44b794af8cb65430050b8e0485dbe29a 553 SUPERFAMILY SSF52540 360 516 2.67E-67 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS20950 44b794af8cb65430050b8e0485dbe29a 553 SUPERFAMILY SSF52540 1 199 2.67E-67 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS20950 44b794af8cb65430050b8e0485dbe29a 553 SUPERFAMILY SSF52540 287 331 2.67E-67 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS20950 44b794af8cb65430050b8e0485dbe29a 553 Pfam PF02463 RecF/RecN/SMC N terminal domain 1 512 1.3E-18 T 29-03-2018 IPR003395 RecF/RecN/SMC, N-terminal AM354_RS20950 44b794af8cb65430050b8e0485dbe29a 553 Gene3D G3DSA:3.40.50.300 213 532 2.5E-16 T 29-03-2018 AM354_RS20950 44b794af8cb65430050b8e0485dbe29a 553 PIRSF PIRSF003128 1 553 2.5E-154 T 29-03-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 AM354_RS08790 65d4c876669a3de9c4a63d6ff67409a6 377 Pfam PF05651 Putative sugar diacid recognition 9 141 5.4E-50 T 29-03-2018 IPR008599 Putative sugar diacid recognition AM354_RS08790 65d4c876669a3de9c4a63d6ff67409a6 377 Gene3D G3DSA:1.10.10.60 305 354 5.5E-7 T 29-03-2018 AM354_RS08790 65d4c876669a3de9c4a63d6ff67409a6 377 Pfam PF13556 PucR C-terminal helix-turn-helix domain 317 373 8.7E-19 T 29-03-2018 IPR025736 PucR C-terminal helix-turn-helix domain AM354_RS06360 05c043fa29e9fe2165b8d5cb9d6f364a 527 Pfam PF03741 Integral membrane protein TerC family 15 203 4.3E-50 T 29-03-2018 IPR005496 Integral membrane protein TerC GO:0016021 AM354_RS06360 05c043fa29e9fe2165b8d5cb9d6f364a 527 Gene3D G3DSA:3.10.580.10 285 438 2.5E-27 T 29-03-2018 AM354_RS06360 05c043fa29e9fe2165b8d5cb9d6f364a 527 SMART SM01091 441 520 1.5E-26 T 29-03-2018 IPR005170 Transporter-associated domain AM354_RS06360 05c043fa29e9fe2165b8d5cb9d6f364a 527 Pfam PF03471 Transporter associated domain 442 518 1.1E-18 T 29-03-2018 IPR005170 Transporter-associated domain AM354_RS06360 05c043fa29e9fe2165b8d5cb9d6f364a 527 Gene3D G3DSA:3.30.465.10 439 519 3.0E-21 T 29-03-2018 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AM354_RS06360 05c043fa29e9fe2165b8d5cb9d6f364a 527 Pfam PF00571 CBS domain 375 424 6.4E-7 T 29-03-2018 IPR000644 CBS domain AM354_RS06360 05c043fa29e9fe2165b8d5cb9d6f364a 527 SUPERFAMILY SSF54631 292 426 3.78E-25 T 29-03-2018 AM354_RS06360 05c043fa29e9fe2165b8d5cb9d6f364a 527 SMART SM00116 313 363 3.0 T 29-03-2018 IPR000644 CBS domain AM354_RS06360 05c043fa29e9fe2165b8d5cb9d6f364a 527 SMART SM00116 376 424 6.6 T 29-03-2018 IPR000644 CBS domain AM354_RS06360 05c043fa29e9fe2165b8d5cb9d6f364a 527 SUPERFAMILY SSF56176 439 524 1.09E-21 T 29-03-2018 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AM354_RS24160 70bfe2a40af898824b24be64fcc7bf0a 1029 Pfam PF16353 Domain of unknown function(DUF4981) 638 725 4.5E-17 T 29-03-2018 IPR032312 Beta-galactosidase, domain 4 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AM354_RS24160 70bfe2a40af898824b24be64fcc7bf0a 1029 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 336 627 1.1E-116 T 29-03-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 AM354_RS24160 70bfe2a40af898824b24be64fcc7bf0a 1029 Pfam PF02929 Beta galactosidase small chain 755 1023 3.7E-56 T 29-03-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AM354_RS24160 70bfe2a40af898824b24be64fcc7bf0a 1029 SUPERFAMILY SSF51445 340 624 1.21E-99 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily AM354_RS24160 70bfe2a40af898824b24be64fcc7bf0a 1029 SUPERFAMILY SSF49303 222 333 9.78E-22 T 29-03-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AM354_RS24160 70bfe2a40af898824b24be64fcc7bf0a 1029 Pfam PF00703 Glycosyl hydrolases family 2 222 333 7.5E-13 T 29-03-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AM354_RS24160 70bfe2a40af898824b24be64fcc7bf0a 1029 Gene3D G3DSA:2.60.120.260 4 220 1.9E-69 T 29-03-2018 IPR008979 Galactose-binding domain-like AM354_RS24160 70bfe2a40af898824b24be64fcc7bf0a 1029 Gene3D G3DSA:2.60.40.10 222 333 2.8E-18 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS24160 70bfe2a40af898824b24be64fcc7bf0a 1029 SUPERFAMILY SSF74650 741 1023 8.0E-90 T 29-03-2018 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 AM354_RS24160 70bfe2a40af898824b24be64fcc7bf0a 1029 PRINTS PR00132 Glycosyl hydrolase family 2 signature 531 546 6.1E-38 T 29-03-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-6798695 AM354_RS24160 70bfe2a40af898824b24be64fcc7bf0a 1029 PRINTS PR00132 Glycosyl hydrolase family 2 signature 148 163 6.1E-38 T 29-03-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-6798695 AM354_RS24160 70bfe2a40af898824b24be64fcc7bf0a 1029 PRINTS PR00132 Glycosyl hydrolase family 2 signature 447 462 6.1E-38 T 29-03-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-6798695 AM354_RS24160 70bfe2a40af898824b24be64fcc7bf0a 1029 PRINTS PR00132 Glycosyl hydrolase family 2 signature 375 393 6.1E-38 T 29-03-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-6798695 AM354_RS24160 70bfe2a40af898824b24be64fcc7bf0a 1029 PRINTS PR00132 Glycosyl hydrolase family 2 signature 344 358 6.1E-38 T 29-03-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-6798695 AM354_RS24160 70bfe2a40af898824b24be64fcc7bf0a 1029 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 54 220 1.2E-62 T 29-03-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AM354_RS24160 70bfe2a40af898824b24be64fcc7bf0a 1029 ProSitePatterns PS00719 Glycosyl hydrolases family 2 signature 1. 385 410 - T 29-03-2018 IPR023230 Glycoside hydrolase, family 2, conserved site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-6798695 AM354_RS24160 70bfe2a40af898824b24be64fcc7bf0a 1029 Hamap MF_01687 Beta-galactosidase [lacZ]. 7 1026 17.515 T 29-03-2018 IPR023933 Glycoside hydrolase, family 2, beta-galactosidase GO:0016798 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AM354_RS24160 70bfe2a40af898824b24be64fcc7bf0a 1029 Gene3D G3DSA:2.70.98.10 735 1026 1.2E-74 T 29-03-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 AM354_RS24160 70bfe2a40af898824b24be64fcc7bf0a 1029 SUPERFAMILY SSF49303 622 730 1.33E-29 T 29-03-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AM354_RS24160 70bfe2a40af898824b24be64fcc7bf0a 1029 SMART SM01038 751 1024 3.6E-114 T 29-03-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AM354_RS24160 70bfe2a40af898824b24be64fcc7bf0a 1029 Gene3D G3DSA:2.60.40.10 627 731 5.1E-24 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS24160 70bfe2a40af898824b24be64fcc7bf0a 1029 ProSitePatterns PS00608 Glycosyl hydrolases family 2 acid/base catalyst. 447 461 - T 29-03-2018 IPR023232 Glycoside hydrolase, family 2, active site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-6798695 AM354_RS24160 70bfe2a40af898824b24be64fcc7bf0a 1029 Gene3D G3DSA:3.20.20.80 334 624 4.5E-84 T 29-03-2018 AM354_RS24160 70bfe2a40af898824b24be64fcc7bf0a 1029 SUPERFAMILY SSF49785 16 220 1.98E-69 T 29-03-2018 IPR008979 Galactose-binding domain-like AM354_RS14135 42b3b784195d551eda123554ff3d190e 196 Gene3D G3DSA:3.90.550.10 1 193 8.1E-33 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS14135 42b3b784195d551eda123554ff3d190e 196 TIGRFAM TIGR02665 molyb_mobA: molybdenum cofactor guanylyltransferase 5 185 1.1E-69 T 29-03-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 AM354_RS14135 42b3b784195d551eda123554ff3d190e 196 SUPERFAMILY SSF53448 5 184 3.13E-33 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS14135 42b3b784195d551eda123554ff3d190e 196 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 3 188 29.52 T 29-03-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 AM354_RS14135 42b3b784195d551eda123554ff3d190e 196 Pfam PF12804 MobA-like NTP transferase domain 7 158 9.2E-34 T 29-03-2018 IPR025877 MobA-like NTP transferase AM354_RS00015 59b834921ce7e34cd6139849f9a24137 247 Gene3D G3DSA:3.40.50.150 18 247 3.1E-45 T 29-03-2018 AM354_RS00015 59b834921ce7e34cd6139849f9a24137 247 SUPERFAMILY SSF53335 20 242 2.48E-43 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS00015 59b834921ce7e34cd6139849f9a24137 247 PIRSF PIRSF006325 1 243 3.3E-131 T 29-03-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 AM354_RS00015 59b834921ce7e34cd6139849f9a24137 247 TIGRFAM TIGR00740 TIGR00740: tRNA (cmo5U34)-methyltransferase 4 242 9.7E-129 T 29-03-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 AM354_RS00015 59b834921ce7e34cd6139849f9a24137 247 Hamap MF_01589 Carboxy-S-adenosyl-L-methionine synthase [cmoA]. 3 242 42.974 T 29-03-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 AM354_RS00015 59b834921ce7e34cd6139849f9a24137 247 Pfam PF13649 Methyltransferase domain 60 158 9.1E-15 T 29-03-2018 AM354_RS19740 e16c820299488b23c750d897d8780550 379 PIRSF PIRSF000138 2 379 7.0E-121 T 29-03-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 AM354_RS19740 e16c820299488b23c750d897d8780550 379 Gene3D G3DSA:3.20.20.70 2 379 1.1E-98 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS19740 e16c820299488b23c750d897d8780550 379 Hamap MF_01559 L-lactate dehydrogenase [lldD]. 1 379 74.132 T 29-03-2018 IPR020920 L-lactate dehydrogenase, bacterial GO:0004457|GO:0006089|GO:0010181|GO:0055114 AM354_RS19740 e16c820299488b23c750d897d8780550 379 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 273 279 - T 29-03-2018 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 AM354_RS19740 e16c820299488b23c750d897d8780550 379 Pfam PF01070 FMN-dependent dehydrogenase 13 375 9.6E-126 T 29-03-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 AM354_RS19740 e16c820299488b23c750d897d8780550 379 SUPERFAMILY SSF51395 223 372 5.74E-100 T 29-03-2018 AM354_RS19740 e16c820299488b23c750d897d8780550 379 SUPERFAMILY SSF51395 7 193 5.74E-100 T 29-03-2018 AM354_RS06635 4e270f095978e7670fef86586cb12b09 555 Gene3D G3DSA:3.30.560.10 104 490 1.3E-101 T 29-03-2018 AM354_RS06635 4e270f095978e7670fef86586cb12b09 555 PIRSF PIRSF000137 1 538 3.8E-140 T 29-03-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 AM354_RS06635 4e270f095978e7670fef86586cb12b09 555 Pfam PF00732 GMC oxidoreductase 3 300 1.8E-98 T 29-03-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 AM354_RS06635 4e270f095978e7670fef86586cb12b09 555 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 259 273 - T 29-03-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 AM354_RS06635 4e270f095978e7670fef86586cb12b09 555 SUPERFAMILY SSF54373 295 477 2.94E-64 T 29-03-2018 AM354_RS06635 4e270f095978e7670fef86586cb12b09 555 Gene3D G3DSA:4.10.450.10 38 103 2.1E-25 T 29-03-2018 AM354_RS06635 4e270f095978e7670fef86586cb12b09 555 SUPERFAMILY SSF51905 1 293 1.25E-89 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS06635 4e270f095978e7670fef86586cb12b09 555 SUPERFAMILY SSF51905 476 535 1.25E-89 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS06635 4e270f095978e7670fef86586cb12b09 555 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 82 105 - T 29-03-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 AM354_RS06635 4e270f095978e7670fef86586cb12b09 555 Hamap MF_00750 Oxygen-dependent choline dehydrogenase [betA]. 1 554 62.758 T 29-03-2018 IPR011533 Oxygen-dependent choline dehydrogenase GO:0008812|GO:0019285 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494 AM354_RS06635 4e270f095978e7670fef86586cb12b09 555 Pfam PF05199 GMC oxidoreductase 393 527 2.3E-41 T 29-03-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 AM354_RS06635 4e270f095978e7670fef86586cb12b09 555 TIGRFAM TIGR01810 betA: choline dehydrogenase 4 537 8.3E-291 T 29-03-2018 IPR011533 Oxygen-dependent choline dehydrogenase GO:0008812|GO:0019285 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494 AM354_RS20120 9748f23797fc57b7aebca09c87b25434 182 Hamap MF_01104 Protein Syd [syd]. 3 181 36.538 T 29-03-2018 IPR009948 Syd GO:0009898 AM354_RS20120 9748f23797fc57b7aebca09c87b25434 182 Pfam PF07348 Syd protein (SUKH-2) 7 179 1.4E-71 T 29-03-2018 IPR009948 Syd GO:0009898 AM354_RS20120 9748f23797fc57b7aebca09c87b25434 182 Gene3D G3DSA:3.40.1580.10 48 179 0.0013 T 29-03-2018 AM354_RS23230 70fd99463fc037721903a302b7ad4181 558 Gene3D G3DSA:3.40.50.1220 218 355 2.0E-15 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM354_RS23230 70fd99463fc037721903a302b7ad4181 558 PIRSF PIRSF004983 1 558 2.3E-173 T 29-03-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 AM354_RS23230 70fd99463fc037721903a302b7ad4181 558 Gene3D G3DSA:3.40.50.970 356 558 5.2E-28 T 29-03-2018 AM354_RS23230 70fd99463fc037721903a302b7ad4181 558 SUPERFAMILY SSF52518 368 548 5.16E-32 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS23230 70fd99463fc037721903a302b7ad4181 558 Gene3D G3DSA:3.40.50.970 1 204 2.2E-51 T 29-03-2018 AM354_RS23230 70fd99463fc037721903a302b7ad4181 558 Pfam PF16582 Middle domain of thiamine pyrophosphate 184 390 1.9E-85 T 29-03-2018 IPR032264 Menaquinone biosynthesis protein MenD, middle domain KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 AM354_RS23230 70fd99463fc037721903a302b7ad4181 558 Hamap MF_01659 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 4 555 31.958 T 29-03-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 AM354_RS23230 70fd99463fc037721903a302b7ad4181 558 TIGRFAM TIGR00173 menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 10 432 2.0E-138 T 29-03-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 AM354_RS23230 70fd99463fc037721903a302b7ad4181 558 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 423 536 2.3E-8 T 29-03-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AM354_RS23230 70fd99463fc037721903a302b7ad4181 558 SUPERFAMILY SSF52518 7 175 1.45E-29 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS23230 70fd99463fc037721903a302b7ad4181 558 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 9 139 1.2E-26 T 29-03-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AM354_RS19235 a116eead22379fa9e90a81907318db1b 440 Pfam PF05525 Branched-chain amino acid transport protein 8 429 4.1E-144 T 29-03-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 AM354_RS19235 a116eead22379fa9e90a81907318db1b 440 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 14 416 6.4E-144 T 29-03-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 AM354_RS09435 94ff4d7bccc75ea810da6023c57a597f 707 Pfam PF07715 TonB-dependent Receptor Plug Domain 65 161 1.9E-17 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS09435 94ff4d7bccc75ea810da6023c57a597f 707 SUPERFAMILY SSF56935 54 707 1.2E-124 T 29-03-2018 AM354_RS09435 94ff4d7bccc75ea810da6023c57a597f 707 Gene3D G3DSA:2.170.130.10 35 169 1.2E-23 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS09435 94ff4d7bccc75ea810da6023c57a597f 707 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 66 707 4.9E-109 T 29-03-2018 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 AM354_RS09435 94ff4d7bccc75ea810da6023c57a597f 707 Gene3D G3DSA:2.40.170.20 175 707 5.8E-78 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS09435 94ff4d7bccc75ea810da6023c57a597f 707 Pfam PF00593 TonB dependent receptor 235 704 1.1E-59 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS12540 46d1cdff4e278449e012a39469196905 1314 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 496 900 8.1E-135 T 29-03-2018 IPR010071 Amino acid adenylation domain AM354_RS12540 46d1cdff4e278449e012a39469196905 1314 Pfam PF00501 AMP-binding enzyme 476 877 7.9E-101 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM354_RS12540 46d1cdff4e278449e012a39469196905 1314 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1016 1031 - T 29-03-2018 IPR006162 Phosphopantetheine attachment site AM354_RS12540 46d1cdff4e278449e012a39469196905 1314 Pfam PF00975 Thioesterase domain 1084 1296 7.5E-37 T 29-03-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 AM354_RS12540 46d1cdff4e278449e012a39469196905 1314 SUPERFAMILY SSF52777 21 195 1.22E-32 T 29-03-2018 AM354_RS12540 46d1cdff4e278449e012a39469196905 1314 Pfam PF13193 AMP-binding enzyme C-terminal domain 885 967 4.0E-7 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain AM354_RS12540 46d1cdff4e278449e012a39469196905 1314 ProSitePatterns PS00455 Putative AMP-binding domain signature. 614 625 - T 29-03-2018 IPR020845 AMP-binding, conserved site AM354_RS12540 46d1cdff4e278449e012a39469196905 1314 SMART SM00824 Thioesterase 1086 1306 1.3E-5 T 29-03-2018 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 AM354_RS12540 46d1cdff4e278449e012a39469196905 1314 Gene3D G3DSA:2.30.38.10 787 867 1.7E-23 T 29-03-2018 AM354_RS12540 46d1cdff4e278449e012a39469196905 1314 Gene3D G3DSA:3.30.300.30 871 977 1.4E-29 T 29-03-2018 AM354_RS12540 46d1cdff4e278449e012a39469196905 1314 Gene3D G3DSA:3.40.50.980 620 782 4.1E-44 T 29-03-2018 AM354_RS12540 46d1cdff4e278449e012a39469196905 1314 Gene3D G3DSA:3.30.559.10 3 207 2.9E-20 T 29-03-2018 AM354_RS12540 46d1cdff4e278449e012a39469196905 1314 SUPERFAMILY SSF52777 202 462 8.23E-34 T 29-03-2018 AM354_RS12540 46d1cdff4e278449e012a39469196905 1314 Gene3D G3DSA:3.40.50.1820 1070 1312 4.8E-20 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS12540 46d1cdff4e278449e012a39469196905 1314 SUPERFAMILY SSF56801 447 1003 1.19E-154 T 29-03-2018 AM354_RS12540 46d1cdff4e278449e012a39469196905 1314 Pfam PF00668 Condensation domain 15 455 3.3E-68 T 29-03-2018 IPR001242 Condensation domain AM354_RS12540 46d1cdff4e278449e012a39469196905 1314 Gene3D G3DSA:3.40.50.980 467 619 1.5E-43 T 29-03-2018 AM354_RS12540 46d1cdff4e278449e012a39469196905 1314 Pfam PF00550 Phosphopantetheine attachment site 994 1054 2.2E-9 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS12540 46d1cdff4e278449e012a39469196905 1314 SUPERFAMILY SSF47336 986 1057 1.15E-12 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS12540 46d1cdff4e278449e012a39469196905 1314 Gene3D G3DSA:1.10.1200.10 978 1069 7.6E-19 T 29-03-2018 AM354_RS12540 46d1cdff4e278449e012a39469196905 1314 SUPERFAMILY SSF53474 1065 1311 3.78E-46 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS11985 e8c7aef7d360e941a88eb266efaadd7e 136 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 9 103 2.0E-45 T 29-03-2018 IPR000238 Ribosome-binding factor A GO:0006364 AM354_RS11985 e8c7aef7d360e941a88eb266efaadd7e 136 SUPERFAMILY SSF89919 2 110 1.31E-31 T 29-03-2018 IPR023799 Ribosome-binding factor A domain AM354_RS11985 e8c7aef7d360e941a88eb266efaadd7e 136 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 3 123 22.235 T 29-03-2018 IPR000238 Ribosome-binding factor A GO:0006364 AM354_RS11985 e8c7aef7d360e941a88eb266efaadd7e 136 Gene3D G3DSA:3.30.300.20 6 123 7.1E-33 T 29-03-2018 IPR015946 K homology domain-like, alpha/beta AM354_RS11985 e8c7aef7d360e941a88eb266efaadd7e 136 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 1 121 9.5E-41 T 29-03-2018 IPR000238 Ribosome-binding factor A GO:0006364 AM354_RS11985 e8c7aef7d360e941a88eb266efaadd7e 136 ProSitePatterns PS01319 Ribosome-binding factor A signature. 82 103 - T 29-03-2018 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 AM354_RS11985 e8c7aef7d360e941a88eb266efaadd7e 136 Pfam PF02033 Ribosome-binding factor A 7 115 8.6E-31 T 29-03-2018 IPR000238 Ribosome-binding factor A GO:0006364 AM354_RS19460 91d73777ca0258e36dcbe4f9105a6f38 365 Gene3D G3DSA:3.30.1360.120 2 135 6.4E-36 T 29-03-2018 AM354_RS19460 91d73777ca0258e36dcbe4f9105a6f38 365 SUPERFAMILY SSF101790 270 360 7.36E-25 T 29-03-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain AM354_RS19460 91d73777ca0258e36dcbe4f9105a6f38 365 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 263 353 4.0E-17 T 29-03-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 AM354_RS19460 91d73777ca0258e36dcbe4f9105a6f38 365 Pfam PF01571 Aminomethyltransferase folate-binding domain 7 254 1.2E-81 T 29-03-2018 IPR006222 Glycine cleavage T-protein-like, N-terminal AM354_RS19460 91d73777ca0258e36dcbe4f9105a6f38 365 Hamap MF_00259 Aminomethyltransferase [gcvT]. 1 359 43.82 T 29-03-2018 IPR022903 Glycine cleavage system T protein, bacteria GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 AM354_RS19460 91d73777ca0258e36dcbe4f9105a6f38 365 SUPERFAMILY SSF103025 3 277 1.32E-91 T 29-03-2018 AM354_RS19460 91d73777ca0258e36dcbe4f9105a6f38 365 PIRSF PIRSF006487 1 363 2.1E-78 T 29-03-2018 AM354_RS19460 91d73777ca0258e36dcbe4f9105a6f38 365 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 2 358 4.9E-155 T 29-03-2018 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 AM354_RS19460 91d73777ca0258e36dcbe4f9105a6f38 365 Gene3D G3DSA:3.30.1360.120 136 231 6.8E-23 T 29-03-2018 AM354_RS19460 91d73777ca0258e36dcbe4f9105a6f38 365 Gene3D G3DSA:4.10.1250.10 232 276 4.6E-16 T 29-03-2018 AM354_RS19460 91d73777ca0258e36dcbe4f9105a6f38 365 Gene3D G3DSA:2.40.30.110 277 363 4.6E-17 T 29-03-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 AM354_RS15260 90b53f4147852faa94522322a83322eb 531 Gene3D G3DSA:1.20.1250.20 14 202 6.7E-28 T 29-03-2018 AM354_RS15260 90b53f4147852faa94522322a83322eb 531 Pfam PF07690 Major Facilitator Superfamily 29 422 6.8E-41 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS15260 90b53f4147852faa94522322a83322eb 531 SUPERFAMILY SSF103473 261 432 8.63E-54 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS15260 90b53f4147852faa94522322a83322eb 531 SUPERFAMILY SSF103473 13 205 8.63E-54 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS15260 90b53f4147852faa94522322a83322eb 531 SUPERFAMILY SSF103473 494 520 8.63E-54 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS15260 90b53f4147852faa94522322a83322eb 531 Gene3D G3DSA:1.20.1250.20 272 531 2.7E-22 T 29-03-2018 AM354_RS15260 90b53f4147852faa94522322a83322eb 531 ProSitePatterns PS00217 Sugar transport proteins signature 2. 120 145 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM354_RS15260 90b53f4147852faa94522322a83322eb 531 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 29 516 2.0E-101 T 29-03-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 AM354_RS05835 b798fc23ea2dc2b6d30c12080500aefc 231 Pfam PF04131 Putative N-acetylmannosamine-6-phosphate epimerase 31 228 2.8E-66 T 29-03-2018 IPR007260 Putative N-acetylmannosamine-6-phosphate epimerase GO:0006051|GO:0047465 KEGG: 00520+5.1.3.9 AM354_RS05835 b798fc23ea2dc2b6d30c12080500aefc 231 Gene3D G3DSA:3.20.20.70 2 230 9.1E-38 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS05835 b798fc23ea2dc2b6d30c12080500aefc 231 Hamap MF_01235 Putative N-acetylmannosamine-6-phosphate 2-epimerase [nanE]. 7 229 40.536 T 29-03-2018 IPR007260 Putative N-acetylmannosamine-6-phosphate epimerase GO:0006051|GO:0047465 KEGG: 00520+5.1.3.9 AM354_RS05835 b798fc23ea2dc2b6d30c12080500aefc 231 SUPERFAMILY SSF51366 8 227 3.14E-61 T 29-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 AM354_RS23590 56fc4606cd5cbf44562107505ea53d0f 490 PRINTS PR00084 Mannitol dehydrogenase signature 27 37 1.9E-18 T 29-03-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AM354_RS23590 56fc4606cd5cbf44562107505ea53d0f 490 PRINTS PR00084 Mannitol dehydrogenase signature 179 192 1.9E-18 T 29-03-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AM354_RS23590 56fc4606cd5cbf44562107505ea53d0f 490 PRINTS PR00084 Mannitol dehydrogenase signature 218 231 1.9E-18 T 29-03-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AM354_RS23590 56fc4606cd5cbf44562107505ea53d0f 490 PRINTS PR00084 Mannitol dehydrogenase signature 249 264 1.9E-18 T 29-03-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AM354_RS23590 56fc4606cd5cbf44562107505ea53d0f 490 SUPERFAMILY SSF51735 6 282 1.97E-91 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS23590 56fc4606cd5cbf44562107505ea53d0f 490 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 218 461 6.4E-90 T 29-03-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 AM354_RS23590 56fc4606cd5cbf44562107505ea53d0f 490 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 26 188 2.1E-43 T 29-03-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 AM354_RS23590 56fc4606cd5cbf44562107505ea53d0f 490 SUPERFAMILY SSF48179 284 487 1.97E-66 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM354_RS23590 56fc4606cd5cbf44562107505ea53d0f 490 Gene3D G3DSA:1.10.1040.10 283 490 2.0E-69 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM354_RS23590 56fc4606cd5cbf44562107505ea53d0f 490 Gene3D G3DSA:3.40.50.720 1 282 4.4E-102 T 29-03-2018 AM354_RS17105 2df66beab907a4ac135bf229cc4bdac1 298 Pfam PF03466 LysR substrate binding domain 95 291 4.2E-18 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS17105 2df66beab907a4ac135bf229cc4bdac1 298 Gene3D G3DSA:3.40.190.10 94 182 5.8E-7 T 29-03-2018 AM354_RS17105 2df66beab907a4ac135bf229cc4bdac1 298 SUPERFAMILY SSF53850 93 295 1.76E-22 T 29-03-2018 AM354_RS17105 2df66beab907a4ac135bf229cc4bdac1 298 SUPERFAMILY SSF46785 8 91 1.69E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS17105 2df66beab907a4ac135bf229cc4bdac1 298 Gene3D G3DSA:3.40.190.10 183 268 1.8E-9 T 29-03-2018 AM354_RS17105 2df66beab907a4ac135bf229cc4bdac1 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 68 5.0E-16 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS17105 2df66beab907a4ac135bf229cc4bdac1 298 Gene3D G3DSA:1.10.10.10 2 89 2.0E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS00965 bb2b3fbdccbbfc3bb8ed6eea1752d456 265 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 5.8E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS00965 bb2b3fbdccbbfc3bb8ed6eea1752d456 265 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 5.8E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS00965 bb2b3fbdccbbfc3bb8ed6eea1752d456 265 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 5.8E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS00965 bb2b3fbdccbbfc3bb8ed6eea1752d456 265 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 187 0.0017 T 29-03-2018 AM354_RS00965 bb2b3fbdccbbfc3bb8ed6eea1752d456 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 3.2E-43 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS00965 bb2b3fbdccbbfc3bb8ed6eea1752d456 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 3.2E-43 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS00965 bb2b3fbdccbbfc3bb8ed6eea1752d456 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 3.2E-43 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS00965 bb2b3fbdccbbfc3bb8ed6eea1752d456 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 3.2E-43 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS00965 bb2b3fbdccbbfc3bb8ed6eea1752d456 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 226 246 3.2E-43 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS00965 bb2b3fbdccbbfc3bb8ed6eea1752d456 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 3.2E-43 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS00965 bb2b3fbdccbbfc3bb8ed6eea1752d456 265 Gene3D G3DSA:3.40.50.720 1 39 4.9E-8 T 29-03-2018 AM354_RS00965 bb2b3fbdccbbfc3bb8ed6eea1752d456 265 Gene3D G3DSA:3.40.50.720 40 265 3.1E-65 T 29-03-2018 AM354_RS00965 bb2b3fbdccbbfc3bb8ed6eea1752d456 265 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 262 9.4E-61 T 29-03-2018 AM354_RS00965 bb2b3fbdccbbfc3bb8ed6eea1752d456 265 SUPERFAMILY SSF51735 7 264 4.11E-80 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS00965 bb2b3fbdccbbfc3bb8ed6eea1752d456 265 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM354_RS08470 b39b44a1c1963f1555d8efa1162a08a8 482 Pfam PF00990 Diguanylate cyclase, GGDEF domain 305 464 3.2E-43 T 29-03-2018 IPR000160 GGDEF domain AM354_RS08470 b39b44a1c1963f1555d8efa1162a08a8 482 SMART SM00267 294 468 1.8E-53 T 29-03-2018 IPR000160 GGDEF domain AM354_RS08470 b39b44a1c1963f1555d8efa1162a08a8 482 SUPERFAMILY SSF55073 310 468 1.65E-41 T 29-03-2018 IPR029787 Nucleotide cyclase AM354_RS08470 b39b44a1c1963f1555d8efa1162a08a8 482 Gene3D G3DSA:3.30.70.270 298 474 1.0E-50 T 29-03-2018 AM354_RS08470 b39b44a1c1963f1555d8efa1162a08a8 482 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 301 467 3.9E-49 T 29-03-2018 IPR000160 GGDEF domain AM354_RS16800 538ca1d099dd85473ceabf77f5ab3d04 128 SUPERFAMILY SSF47175 23 128 2.0E-30 T 29-03-2018 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 AM354_RS16800 538ca1d099dd85473ceabf77f5ab3d04 128 Pfam PF07361 Cytochrome b562 24 128 5.6E-33 T 29-03-2018 IPR009155 Cytochrome b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900|GO:0042597 AM354_RS16800 538ca1d099dd85473ceabf77f5ab3d04 128 PIRSF PIRSF000029 1 128 5.8E-48 T 29-03-2018 IPR009155 Cytochrome b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900|GO:0042597 AM354_RS16800 538ca1d099dd85473ceabf77f5ab3d04 128 Gene3D G3DSA:1.20.120.10 24 128 8.5E-21 T 29-03-2018 AM354_RS19230 9e5364e5ed15dbf635bf26691becefcb 664 Pfam PF02779 Transketolase, pyrimidine binding domain 355 524 2.4E-44 T 29-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AM354_RS19230 9e5364e5ed15dbf635bf26691becefcb 664 Gene3D G3DSA:3.40.50.920 541 664 8.8E-34 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AM354_RS19230 9e5364e5ed15dbf635bf26691becefcb 664 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 4 334 2.3E-170 T 29-03-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AM354_RS19230 9e5364e5ed15dbf635bf26691becefcb 664 SMART SM00861 355 526 1.1E-67 T 29-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AM354_RS19230 9e5364e5ed15dbf635bf26691becefcb 664 Gene3D G3DSA:3.40.50.970 1 364 4.0E-128 T 29-03-2018 AM354_RS19230 9e5364e5ed15dbf635bf26691becefcb 664 SUPERFAMILY SSF52922 533 664 9.03E-44 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AM354_RS19230 9e5364e5ed15dbf635bf26691becefcb 664 ProSitePatterns PS00802 Transketolase signature 2. 467 483 - T 29-03-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AM354_RS19230 9e5364e5ed15dbf635bf26691becefcb 664 SUPERFAMILY SSF52518 5 331 1.37E-120 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS19230 9e5364e5ed15dbf635bf26691becefcb 664 SUPERFAMILY SSF52518 335 526 2.24E-67 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS19230 9e5364e5ed15dbf635bf26691becefcb 664 Pfam PF02780 Transketolase, C-terminal domain 540 655 5.7E-20 T 29-03-2018 IPR033248 Transketolase, C-terminal domain AM354_RS19230 9e5364e5ed15dbf635bf26691becefcb 664 Gene3D G3DSA:3.40.50.970 365 540 9.4E-41 T 29-03-2018 AM354_RS19230 9e5364e5ed15dbf635bf26691becefcb 664 ProSitePatterns PS00801 Transketolase signature 1. 12 32 - T 29-03-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AM354_RS19230 9e5364e5ed15dbf635bf26691becefcb 664 TIGRFAM TIGR00232 tktlase_bact: transketolase 5 663 0.0 T 29-03-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 AM354_RS22160 9e5364e5ed15dbf635bf26691becefcb 664 Pfam PF02779 Transketolase, pyrimidine binding domain 355 524 2.4E-44 T 29-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AM354_RS22160 9e5364e5ed15dbf635bf26691becefcb 664 Gene3D G3DSA:3.40.50.920 541 664 8.8E-34 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AM354_RS22160 9e5364e5ed15dbf635bf26691becefcb 664 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 4 334 2.3E-170 T 29-03-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AM354_RS22160 9e5364e5ed15dbf635bf26691becefcb 664 SMART SM00861 355 526 1.1E-67 T 29-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AM354_RS22160 9e5364e5ed15dbf635bf26691becefcb 664 Gene3D G3DSA:3.40.50.970 1 364 4.0E-128 T 29-03-2018 AM354_RS22160 9e5364e5ed15dbf635bf26691becefcb 664 SUPERFAMILY SSF52922 533 664 9.03E-44 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AM354_RS22160 9e5364e5ed15dbf635bf26691becefcb 664 ProSitePatterns PS00802 Transketolase signature 2. 467 483 - T 29-03-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AM354_RS22160 9e5364e5ed15dbf635bf26691becefcb 664 SUPERFAMILY SSF52518 5 331 1.37E-120 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS22160 9e5364e5ed15dbf635bf26691becefcb 664 SUPERFAMILY SSF52518 335 526 2.24E-67 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS22160 9e5364e5ed15dbf635bf26691becefcb 664 Pfam PF02780 Transketolase, C-terminal domain 540 655 5.7E-20 T 29-03-2018 IPR033248 Transketolase, C-terminal domain AM354_RS22160 9e5364e5ed15dbf635bf26691becefcb 664 Gene3D G3DSA:3.40.50.970 365 540 9.4E-41 T 29-03-2018 AM354_RS22160 9e5364e5ed15dbf635bf26691becefcb 664 ProSitePatterns PS00801 Transketolase signature 1. 12 32 - T 29-03-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AM354_RS22160 9e5364e5ed15dbf635bf26691becefcb 664 TIGRFAM TIGR00232 tktlase_bact: transketolase 5 663 0.0 T 29-03-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 AM354_RS25500 b9c38cc1e40041e9a0ee276c47d25b3a 240 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 16 236 1.4E-84 T 29-03-2018 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 AM354_RS25500 b9c38cc1e40041e9a0ee276c47d25b3a 240 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 43 56 - T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS25500 b9c38cc1e40041e9a0ee276c47d25b3a 240 SUPERFAMILY SSF88659 89 156 2.7E-16 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS25500 b9c38cc1e40041e9a0ee276c47d25b3a 240 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 16 236 7.7E-31 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS25500 b9c38cc1e40041e9a0ee276c47d25b3a 240 PIRSF PIRSF000770 3 240 3.8E-42 T 29-03-2018 AM354_RS25500 b9c38cc1e40041e9a0ee276c47d25b3a 240 Gene3D G3DSA:1.10.10.10 89 136 8.0E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS25500 b9c38cc1e40041e9a0ee276c47d25b3a 240 Pfam PF04542 Sigma-70 region 2 17 88 6.1E-16 T 29-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS25500 b9c38cc1e40041e9a0ee276c47d25b3a 240 SUPERFAMILY SSF88946 5 88 3.14E-23 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS25500 b9c38cc1e40041e9a0ee276c47d25b3a 240 Pfam PF04545 Sigma-70, region 4 185 234 7.3E-18 T 29-03-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS25500 b9c38cc1e40041e9a0ee276c47d25b3a 240 Gene3D G3DSA:1.10.1740.10 2 86 2.8E-21 T 29-03-2018 AM354_RS25500 b9c38cc1e40041e9a0ee276c47d25b3a 240 Hamap MF_00962 RNA polymerase sigma factor FliA [fliA]. 5 239 62.421 T 29-03-2018 IPR028617 RNA polymerase sigma factor FliA GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 AM354_RS25500 b9c38cc1e40041e9a0ee276c47d25b3a 240 PRINTS PR00046 Major sigma-70 factor signature 221 232 1.0E-13 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS25500 b9c38cc1e40041e9a0ee276c47d25b3a 240 PRINTS PR00046 Major sigma-70 factor signature 206 221 1.0E-13 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS25500 b9c38cc1e40041e9a0ee276c47d25b3a 240 PRINTS PR00046 Major sigma-70 factor signature 43 56 1.0E-13 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS25500 b9c38cc1e40041e9a0ee276c47d25b3a 240 PRINTS PR00046 Major sigma-70 factor signature 67 75 1.0E-13 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS25500 b9c38cc1e40041e9a0ee276c47d25b3a 240 PRINTS PR00046 Major sigma-70 factor signature 189 201 1.0E-13 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS25500 b9c38cc1e40041e9a0ee276c47d25b3a 240 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 206 232 - T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS25500 b9c38cc1e40041e9a0ee276c47d25b3a 240 SUPERFAMILY SSF88659 150 238 5.05E-21 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS25500 b9c38cc1e40041e9a0ee276c47d25b3a 240 Gene3D G3DSA:1.10.10.10 145 239 2.1E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS25500 b9c38cc1e40041e9a0ee276c47d25b3a 240 Pfam PF04539 Sigma-70 region 3 97 158 2.7E-16 T 29-03-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS17315 3fc9e65015db9b1b2f51152d34e57ae9 476 TIGRFAM TIGR02199 rfaE_dom_II: bifunctional protein RfaE, domain II 331 472 6.0E-63 T 29-03-2018 IPR011914 RfaE bifunctional protein, domain II GO:0005975|GO:0016773|GO:0016779 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.7.70+2.7.1.167 AM354_RS17315 3fc9e65015db9b1b2f51152d34e57ae9 476 SUPERFAMILY SSF52374 340 471 9.01E-21 T 29-03-2018 AM354_RS17315 3fc9e65015db9b1b2f51152d34e57ae9 476 TIGRFAM TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I 6 312 2.5E-128 T 29-03-2018 IPR011913 RfaE bifunctional protein, domain I GO:0005975|GO:0016773|GO:0016779 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.7.70+2.7.1.167 AM354_RS17315 3fc9e65015db9b1b2f51152d34e57ae9 476 Pfam PF01467 Cytidylyltransferase-like 345 469 8.0E-15 T 29-03-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AM354_RS17315 3fc9e65015db9b1b2f51152d34e57ae9 476 Pfam PF00294 pfkB family carbohydrate kinase 13 305 2.1E-55 T 29-03-2018 IPR011611 Carbohydrate kinase PfkB AM354_RS17315 3fc9e65015db9b1b2f51152d34e57ae9 476 SUPERFAMILY SSF53613 12 309 2.34E-58 T 29-03-2018 IPR029056 Ribokinase-like AM354_RS17315 3fc9e65015db9b1b2f51152d34e57ae9 476 Gene3D G3DSA:3.40.50.620 319 476 5.9E-26 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS17315 3fc9e65015db9b1b2f51152d34e57ae9 476 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 342 408 1.7E-17 T 29-03-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AM354_RS17315 3fc9e65015db9b1b2f51152d34e57ae9 476 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 51 74 - T 29-03-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AM354_RS17315 3fc9e65015db9b1b2f51152d34e57ae9 476 Hamap MF_01603 Bifunctional protein HldE [hldE]. 4 474 43.277 T 29-03-2018 IPR023030 Bifunctional protein HldE GO:0016773|GO:0016779 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.7.70+2.7.1.167 AM354_RS17315 3fc9e65015db9b1b2f51152d34e57ae9 476 Gene3D G3DSA:3.40.1190.20 2 310 4.9E-59 T 29-03-2018 IPR029056 Ribokinase-like AM354_RS00135 4109ba713a4967b0ec93d77db5a43fa6 638 SMART SM00487 16 342 0.0014 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AM354_RS00135 4109ba713a4967b0ec93d77db5a43fa6 638 SUPERFAMILY SSF52540 13 232 1.89E-26 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS00135 4109ba713a4967b0ec93d77db5a43fa6 638 SMART SM00491 474 603 4.6E-54 T 29-03-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 AM354_RS00135 4109ba713a4967b0ec93d77db5a43fa6 638 Gene3D G3DSA:3.40.50.300 444 627 1.3E-12 T 29-03-2018 AM354_RS00135 4109ba713a4967b0ec93d77db5a43fa6 638 SUPERFAMILY SSF52540 431 595 2.82E-21 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS00135 4109ba713a4967b0ec93d77db5a43fa6 638 SUPERFAMILY SSF52540 388 402 2.82E-21 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS00135 4109ba713a4967b0ec93d77db5a43fa6 638 SUPERFAMILY SSF52540 173 248 2.82E-21 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS00135 4109ba713a4967b0ec93d77db5a43fa6 638 SUPERFAMILY SSF52540 39 84 2.82E-21 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS00135 4109ba713a4967b0ec93d77db5a43fa6 638 Gene3D G3DSA:3.40.50.300 17 420 2.7E-32 T 29-03-2018 AM354_RS00135 4109ba713a4967b0ec93d77db5a43fa6 638 Pfam PF04851 Type III restriction enzyme, res subunit 18 232 6.4E-5 T 29-03-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AM354_RS00135 4109ba713a4967b0ec93d77db5a43fa6 638 Pfam PF13307 Helicase C-terminal domain 459 616 7.9E-35 T 29-03-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 AM354_RS20215 2b0ffb366e82e935b5b7df22114ad72c 808 Gene3D G3DSA:3.10.20.310 174 265 5.2E-21 T 29-03-2018 AM354_RS20215 2b0ffb366e82e935b5b7df22114ad72c 808 Gene3D G3DSA:2.40.160.50 388 808 8.0E-88 T 29-03-2018 AM354_RS20215 2b0ffb366e82e935b5b7df22114ad72c 808 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 24 808 2.8E-287 T 29-03-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 AM354_RS20215 2b0ffb366e82e935b5b7df22114ad72c 808 Pfam PF07244 Surface antigen variable number repeat 348 421 5.4E-15 T 29-03-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 AM354_RS20215 2b0ffb366e82e935b5b7df22114ad72c 808 Pfam PF07244 Surface antigen variable number repeat 176 263 4.1E-15 T 29-03-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 AM354_RS20215 2b0ffb366e82e935b5b7df22114ad72c 808 Pfam PF07244 Surface antigen variable number repeat 266 344 1.1E-10 T 29-03-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 AM354_RS20215 2b0ffb366e82e935b5b7df22114ad72c 808 Pfam PF07244 Surface antigen variable number repeat 92 172 6.8E-11 T 29-03-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 AM354_RS20215 2b0ffb366e82e935b5b7df22114ad72c 808 Gene3D G3DSA:3.10.20.310 350 387 0.002 T 29-03-2018 AM354_RS20215 2b0ffb366e82e935b5b7df22114ad72c 808 Gene3D G3DSA:3.10.20.310 92 173 3.1E-12 T 29-03-2018 AM354_RS20215 2b0ffb366e82e935b5b7df22114ad72c 808 Pfam PF01103 Surface antigen 448 808 1.4E-99 T 29-03-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 AM354_RS20215 2b0ffb366e82e935b5b7df22114ad72c 808 PIRSF PIRSF006076 1 808 2.3E-256 T 29-03-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 AM354_RS20215 2b0ffb366e82e935b5b7df22114ad72c 808 Gene3D G3DSA:3.10.20.310 266 346 1.1E-11 T 29-03-2018 AM354_RS20215 2b0ffb366e82e935b5b7df22114ad72c 808 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 2 808 26.197 T 29-03-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 AM354_RS20215 2b0ffb366e82e935b5b7df22114ad72c 808 Gene3D G3DSA:3.10.20.310 21 91 6.6E-8 T 29-03-2018 AM354_RS10245 8fc359a39c5286d6af0c82a47d70bbec 332 SUPERFAMILY SSF88946 58 166 1.96E-45 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS10245 8fc359a39c5286d6af0c82a47d70bbec 332 SUPERFAMILY SSF88659 169 243 8.72E-15 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS10245 8fc359a39c5286d6af0c82a47d70bbec 332 Pfam PF00140 Sigma-70 factor, region 1.2 58 89 5.1E-11 T 29-03-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS10245 8fc359a39c5286d6af0c82a47d70bbec 332 Pfam PF04545 Sigma-70, region 4 264 317 2.7E-15 T 29-03-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS10245 8fc359a39c5286d6af0c82a47d70bbec 332 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 289 315 - T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS10245 8fc359a39c5286d6af0c82a47d70bbec 332 Gene3D G3DSA:1.10.10.10 166 216 1.6E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS10245 8fc359a39c5286d6af0c82a47d70bbec 332 Gene3D G3DSA:1.10.601.10 2 165 3.2E-59 T 29-03-2018 AM354_RS10245 8fc359a39c5286d6af0c82a47d70bbec 332 Pfam PF04542 Sigma-70 region 2 96 165 3.2E-21 T 29-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS10245 8fc359a39c5286d6af0c82a47d70bbec 332 Pfam PF04539 Sigma-70 region 3 176 250 9.3E-21 T 29-03-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS10245 8fc359a39c5286d6af0c82a47d70bbec 332 Hamap MF_00959 RNA polymerase sigma factor RpoS [rpoS]. 12 330 39.935 T 29-03-2018 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS10245 8fc359a39c5286d6af0c82a47d70bbec 332 SUPERFAMILY SSF88659 227 321 5.05E-23 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS10245 8fc359a39c5286d6af0c82a47d70bbec 332 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 93 319 4.1E-35 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS10245 8fc359a39c5286d6af0c82a47d70bbec 332 Gene3D G3DSA:1.10.10.10 258 325 5.6E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS10245 8fc359a39c5286d6af0c82a47d70bbec 332 PRINTS PR00046 Major sigma-70 factor signature 268 280 2.5E-27 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS10245 8fc359a39c5286d6af0c82a47d70bbec 332 PRINTS PR00046 Major sigma-70 factor signature 304 315 2.5E-27 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS10245 8fc359a39c5286d6af0c82a47d70bbec 332 PRINTS PR00046 Major sigma-70 factor signature 289 304 2.5E-27 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS10245 8fc359a39c5286d6af0c82a47d70bbec 332 PRINTS PR00046 Major sigma-70 factor signature 120 133 2.5E-27 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS10245 8fc359a39c5286d6af0c82a47d70bbec 332 PRINTS PR00046 Major sigma-70 factor signature 144 152 2.5E-27 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS10245 8fc359a39c5286d6af0c82a47d70bbec 332 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 120 133 - T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS10245 8fc359a39c5286d6af0c82a47d70bbec 332 TIGRFAM TIGR02394 rpoS_proteo: RNA polymerase sigma factor RpoS 50 330 1.5E-144 T 29-03-2018 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS16515 1b371aaec6e20d4af32403f1e2d79335 155 Pfam PF01037 Lrp/AsnC ligand binding domain 70 143 1.5E-19 T 29-03-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AM354_RS16515 1b371aaec6e20d4af32403f1e2d79335 155 SUPERFAMILY SSF46785 2 63 1.97E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS16515 1b371aaec6e20d4af32403f1e2d79335 155 SUPERFAMILY SSF54909 65 153 8.45E-17 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel AM354_RS16515 1b371aaec6e20d4af32403f1e2d79335 155 Gene3D G3DSA:1.10.10.10 4 55 6.2E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS16515 1b371aaec6e20d4af32403f1e2d79335 155 Gene3D G3DSA:3.30.70.920 57 150 3.9E-21 T 29-03-2018 AM354_RS16515 1b371aaec6e20d4af32403f1e2d79335 155 SMART SM00344 4 113 1.8E-31 T 29-03-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AM354_RS16515 1b371aaec6e20d4af32403f1e2d79335 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 4 20 1.8E-10 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 AM354_RS16515 1b371aaec6e20d4af32403f1e2d79335 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 50 1.8E-10 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 AM354_RS16515 1b371aaec6e20d4af32403f1e2d79335 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 20 31 1.8E-10 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 AM354_RS16515 1b371aaec6e20d4af32403f1e2d79335 155 Pfam PF13404 AsnC-type helix-turn-helix domain 4 41 4.3E-14 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 AM354_RS02350 b71b57cd15b8feb19bcd789518b3457c 460 PRINTS PR01036 Tetracycline resistance protein TetB signature 301 325 4.9E-13 T 29-03-2018 AM354_RS02350 b71b57cd15b8feb19bcd789518b3457c 460 PRINTS PR01036 Tetracycline resistance protein TetB signature 398 417 4.9E-13 T 29-03-2018 AM354_RS02350 b71b57cd15b8feb19bcd789518b3457c 460 PRINTS PR01036 Tetracycline resistance protein TetB signature 137 161 4.9E-13 T 29-03-2018 AM354_RS02350 b71b57cd15b8feb19bcd789518b3457c 460 PRINTS PR01036 Tetracycline resistance protein TetB signature 107 127 4.9E-13 T 29-03-2018 AM354_RS02350 b71b57cd15b8feb19bcd789518b3457c 460 PRINTS PR01036 Tetracycline resistance protein TetB signature 16 40 4.9E-13 T 29-03-2018 AM354_RS02350 b71b57cd15b8feb19bcd789518b3457c 460 Gene3D G3DSA:1.20.1250.20 11 205 1.5E-31 T 29-03-2018 AM354_RS02350 b71b57cd15b8feb19bcd789518b3457c 460 Gene3D G3DSA:1.20.1250.20 257 460 8.7E-26 T 29-03-2018 AM354_RS02350 b71b57cd15b8feb19bcd789518b3457c 460 SUPERFAMILY SSF103473 12 202 1.16E-66 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS02350 b71b57cd15b8feb19bcd789518b3457c 460 SUPERFAMILY SSF103473 248 459 1.16E-66 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS02350 b71b57cd15b8feb19bcd789518b3457c 460 Pfam PF07690 Major Facilitator Superfamily 18 407 3.6E-54 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS04150 1dd07dc6144808a33ed86f046b55fc6c 417 SMART SM01329 29 413 1.7E-179 T 29-03-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 AM354_RS04150 1dd07dc6144808a33ed86f046b55fc6c 417 SUPERFAMILY SSF53659 4 417 8.06E-149 T 29-03-2018 AM354_RS04150 1dd07dc6144808a33ed86f046b55fc6c 417 TIGRFAM TIGR00183 prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent 1 417 1.5E-235 T 29-03-2018 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 AM354_RS04150 1dd07dc6144808a33ed86f046b55fc6c 417 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 304 323 - T 29-03-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 AM354_RS04150 1dd07dc6144808a33ed86f046b55fc6c 417 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 30 413 1.4E-117 T 29-03-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 AM354_RS04150 1dd07dc6144808a33ed86f046b55fc6c 417 Gene3D G3DSA:3.40.718.10 9 417 2.0E-134 T 29-03-2018 AM354_RS19485 776e9be0854fcc0075f214e61e2650e5 472 Pfam PF00512 His Kinase A (phospho-acceptor) domain 243 305 1.2E-12 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS19485 776e9be0854fcc0075f214e61e2650e5 472 SMART SM00388 241 306 7.9E-10 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS19485 776e9be0854fcc0075f214e61e2650e5 472 Gene3D G3DSA:1.10.287.130 231 300 2.5E-12 T 29-03-2018 AM354_RS19485 776e9be0854fcc0075f214e61e2650e5 472 Gene3D G3DSA:3.30.565.10 301 461 4.5E-33 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS19485 776e9be0854fcc0075f214e61e2650e5 472 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 352 460 9.1E-16 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS19485 776e9be0854fcc0075f214e61e2650e5 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 389 403 9.5E-11 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS19485 776e9be0854fcc0075f214e61e2650e5 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 446 459 9.5E-11 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS19485 776e9be0854fcc0075f214e61e2650e5 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 417 9.5E-11 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS19485 776e9be0854fcc0075f214e61e2650e5 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 421 439 9.5E-11 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS19485 776e9be0854fcc0075f214e61e2650e5 472 SUPERFAMILY SSF55874 296 460 2.36E-35 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS19485 776e9be0854fcc0075f214e61e2650e5 472 SMART SM00387 351 462 2.0E-28 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS19485 776e9be0854fcc0075f214e61e2650e5 472 SUPERFAMILY SSF47384 224 307 6.28E-15 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS10635 faa65a236c167db5b8a25030de016dfb 602 Gene3D G3DSA:3.40.50.980 192 387 1.2E-39 T 29-03-2018 AM354_RS10635 faa65a236c167db5b8a25030de016dfb 602 Pfam PF00501 AMP-binding enzyme 15 469 1.0E-92 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM354_RS10635 faa65a236c167db5b8a25030de016dfb 602 Gene3D G3DSA:3.40.50.980 8 191 6.3E-35 T 29-03-2018 AM354_RS10635 faa65a236c167db5b8a25030de016dfb 602 Gene3D G3DSA:3.30.300.30 464 600 1.0E-14 T 29-03-2018 AM354_RS10635 faa65a236c167db5b8a25030de016dfb 602 Gene3D G3DSA:2.30.38.10 388 462 5.0E-20 T 29-03-2018 AM354_RS10635 faa65a236c167db5b8a25030de016dfb 602 SUPERFAMILY SSF56801 339 599 1.7E-112 T 29-03-2018 AM354_RS10635 faa65a236c167db5b8a25030de016dfb 602 SUPERFAMILY SSF56801 8 288 1.7E-112 T 29-03-2018 AM354_RS10635 faa65a236c167db5b8a25030de016dfb 602 ProSitePatterns PS00455 Putative AMP-binding domain signature. 186 197 - T 29-03-2018 IPR020845 AMP-binding, conserved site AM354_RS09625 8489ee8957bbdcc68a557efe51e1852e 174 Pfam PF01292 Prokaryotic cytochrome b561 3 169 9.4E-20 T 29-03-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 AM354_RS09625 8489ee8957bbdcc68a557efe51e1852e 174 SUPERFAMILY SSF81342 3 169 5.89E-26 T 29-03-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 AM354_RS09625 8489ee8957bbdcc68a557efe51e1852e 174 Gene3D G3DSA:1.20.950.20 1 174 7.4E-23 T 29-03-2018 AM354_RS02830 759c60a4e4eefb5fd3b5edadf4f93cb2 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 1.2E-17 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS02830 759c60a4e4eefb5fd3b5edadf4f93cb2 293 SUPERFAMILY SSF53850 93 289 3.8E-35 T 29-03-2018 AM354_RS02830 759c60a4e4eefb5fd3b5edadf4f93cb2 293 Gene3D G3DSA:3.40.190.10 177 258 1.2E-12 T 29-03-2018 AM354_RS02830 759c60a4e4eefb5fd3b5edadf4f93cb2 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 1.9E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS02830 759c60a4e4eefb5fd3b5edadf4f93cb2 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 1.9E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS02830 759c60a4e4eefb5fd3b5edadf4f93cb2 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 1.9E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS02830 759c60a4e4eefb5fd3b5edadf4f93cb2 293 Gene3D G3DSA:3.40.190.10 93 176 1.6E-17 T 29-03-2018 AM354_RS02830 759c60a4e4eefb5fd3b5edadf4f93cb2 293 SUPERFAMILY SSF46785 2 86 4.18E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS02830 759c60a4e4eefb5fd3b5edadf4f93cb2 293 Gene3D G3DSA:1.10.10.10 1 87 1.8E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS02830 759c60a4e4eefb5fd3b5edadf4f93cb2 293 Pfam PF03466 LysR substrate binding domain 91 286 9.3E-37 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS15215 4f61507f31bbbc4daf7b845a01f1bf90 75 Pfam PF13693 Winged helix-turn-helix DNA-binding 6 71 8.2E-34 T 29-03-2018 AM354_RS15215 4f61507f31bbbc4daf7b845a01f1bf90 75 Gene3D G3DSA:1.10.260.40 2 72 2.9E-12 T 29-03-2018 AM354_RS15215 4f61507f31bbbc4daf7b845a01f1bf90 75 SUPERFAMILY SSF47413 4 70 2.59E-28 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS21610 f0599e5e8fb6bf0e4d51ee1f2db2f83c 77 PIRSF PIRSF030786 1 70 2.5E-35 T 29-03-2018 IPR007054 Lysis protein S GO:0019835 AM354_RS21610 f0599e5e8fb6bf0e4d51ee1f2db2f83c 77 Pfam PF04971 Bacteriophage P21 holin S 3 67 1.8E-29 T 29-03-2018 IPR007054 Lysis protein S GO:0019835 AM354_RS21000 de2b5e21cedd38a6908ce7906f9432ed 191 SUPERFAMILY SSF88946 2 104 1.11E-29 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS21000 de2b5e21cedd38a6908ce7906f9432ed 191 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 22 183 3.4E-31 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS21000 de2b5e21cedd38a6908ce7906f9432ed 191 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 46 77 - T 29-03-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS21000 de2b5e21cedd38a6908ce7906f9432ed 191 Pfam PF04542 Sigma-70 region 2 25 91 6.9E-17 T 29-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS21000 de2b5e21cedd38a6908ce7906f9432ed 191 Pfam PF08281 Sigma-70, region 4 129 180 4.5E-19 T 29-03-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS21000 de2b5e21cedd38a6908ce7906f9432ed 191 SUPERFAMILY SSF88659 122 183 9.53E-19 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS21000 de2b5e21cedd38a6908ce7906f9432ed 191 Gene3D G3DSA:1.10.10.10 115 187 2.6E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS21000 de2b5e21cedd38a6908ce7906f9432ed 191 TIGRFAM TIGR02939 RpoE_Sigma70: RNA polymerase sigma factor RpoE 1 189 4.3E-99 T 29-03-2018 IPR014286 RNA polymerase sigma-70 RpoE type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS21000 de2b5e21cedd38a6908ce7906f9432ed 191 Gene3D G3DSA:1.10.1740.10 1 114 3.1E-29 T 29-03-2018 AM354_RS03375 3597791b2155949ecced21f950c61c78 138 Pfam PF10697 Protein of unknown function (DUF2502) 23 112 4.9E-29 T 29-03-2018 IPR019638 Protein of unknown function DUF2502 AM354_RS11995 37575bdee9e3d06f2a8ca28fb2ca7b38 502 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 4 348 1.6E-124 T 29-03-2018 IPR010213 Transcription termination factor NusA GO:0003723 AM354_RS11995 37575bdee9e3d06f2a8ca28fb2ca7b38 502 SUPERFAMILY SSF47794 362 422 2.67E-17 T 29-03-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 AM354_RS11995 37575bdee9e3d06f2a8ca28fb2ca7b38 502 SMART SM00316 133 200 3.2E-9 T 29-03-2018 IPR022967 RNA-binding domain, S1 AM354_RS11995 37575bdee9e3d06f2a8ca28fb2ca7b38 502 Gene3D G3DSA:3.30.300.20 278 353 3.0E-9 T 29-03-2018 IPR015946 K homology domain-like, alpha/beta AM354_RS11995 37575bdee9e3d06f2a8ca28fb2ca7b38 502 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 372 421 4.7E-22 T 29-03-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication AM354_RS11995 37575bdee9e3d06f2a8ca28fb2ca7b38 502 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 448 496 4.2E-18 T 29-03-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication AM354_RS11995 37575bdee9e3d06f2a8ca28fb2ca7b38 502 Gene3D G3DSA:3.30.300.20 199 276 2.6E-33 T 29-03-2018 IPR015946 K homology domain-like, alpha/beta AM354_RS11995 37575bdee9e3d06f2a8ca28fb2ca7b38 502 SUPERFAMILY SSF50249 132 199 3.59E-17 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS11995 37575bdee9e3d06f2a8ca28fb2ca7b38 502 SUPERFAMILY SSF47794 436 499 9.26E-18 T 29-03-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 AM354_RS11995 37575bdee9e3d06f2a8ca28fb2ca7b38 502 Gene3D G3DSA:1.10.150.20 359 428 1.4E-16 T 29-03-2018 AM354_RS11995 37575bdee9e3d06f2a8ca28fb2ca7b38 502 Gene3D G3DSA:1.10.150.20 434 502 2.8E-17 T 29-03-2018 AM354_RS11995 37575bdee9e3d06f2a8ca28fb2ca7b38 502 SUPERFAMILY SSF54814 279 334 8.72E-12 T 29-03-2018 IPR009019 K homology domain, prokaryotic type GO:0003723 AM354_RS11995 37575bdee9e3d06f2a8ca28fb2ca7b38 502 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 417 27.539 T 29-03-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 AM354_RS11995 37575bdee9e3d06f2a8ca28fb2ca7b38 502 Pfam PF14520 Helix-hairpin-helix domain 439 493 1.3E-10 T 29-03-2018 AM354_RS11995 37575bdee9e3d06f2a8ca28fb2ca7b38 502 Pfam PF14520 Helix-hairpin-helix domain 377 418 2.6E-4 T 29-03-2018 AM354_RS11995 37575bdee9e3d06f2a8ca28fb2ca7b38 502 Pfam PF13184 NusA-like KH domain 230 297 9.1E-28 T 29-03-2018 IPR025249 KH domain, NusA-like GO:0003723 AM354_RS11995 37575bdee9e3d06f2a8ca28fb2ca7b38 502 SUPERFAMILY SSF69705 1 126 1.44E-41 T 29-03-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 AM354_RS11995 37575bdee9e3d06f2a8ca28fb2ca7b38 502 SUPERFAMILY SSF54814 201 278 2.52E-29 T 29-03-2018 IPR009019 K homology domain, prokaryotic type GO:0003723 AM354_RS11995 37575bdee9e3d06f2a8ca28fb2ca7b38 502 Gene3D G3DSA:3.30.1480.10 1 128 7.6E-45 T 29-03-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 AM354_RS11995 37575bdee9e3d06f2a8ca28fb2ca7b38 502 Pfam PF08529 NusA N-terminal domain 4 123 2.6E-36 T 29-03-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 AM354_RS11995 37575bdee9e3d06f2a8ca28fb2ca7b38 502 Gene3D G3DSA:2.40.50.140 129 198 1.2E-13 T 29-03-2018 AM354_RS05615 11efa8d02f675d622e7c096054c9faad 298 Gene3D G3DSA:3.90.1200.10 87 280 5.7E-6 T 29-03-2018 AM354_RS05615 11efa8d02f675d622e7c096054c9faad 298 Pfam PF01636 Phosphotransferase enzyme family 62 243 4.2E-7 T 29-03-2018 IPR002575 Aminoglycoside phosphotransferase AM354_RS05615 11efa8d02f675d622e7c096054c9faad 298 SUPERFAMILY SSF56112 11 268 3.06E-19 T 29-03-2018 IPR011009 Protein kinase-like domain AM354_RS08640 7d492a52e65f30c168d05718ed9be487 380 Gene3D G3DSA:3.90.1510.10 42 276 2.0E-95 T 29-03-2018 IPR018193 Glycerate kinase, flavodoxin-like domain GO:0008887|GO:0031388 AM354_RS08640 7d492a52e65f30c168d05718ed9be487 380 Pfam PF02595 Glycerate kinase family 3 373 5.0E-145 T 29-03-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 AM354_RS08640 7d492a52e65f30c168d05718ed9be487 380 SUPERFAMILY SSF110738 1 375 8.5E-133 T 29-03-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 AM354_RS08640 7d492a52e65f30c168d05718ed9be487 380 PIRSF PIRSF006078 1 377 9.1E-137 T 29-03-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 AM354_RS08640 7d492a52e65f30c168d05718ed9be487 380 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 2 375 2.7E-158 T 29-03-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 AM354_RS19210 d75ac6158bb771f854808669573644e9 264 Gene3D G3DSA:3.40.50.720 1 118 2.0E-10 T 29-03-2018 AM354_RS19210 d75ac6158bb771f854808669573644e9 264 SUPERFAMILY SSF51735 1 149 4.26E-20 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS19210 d75ac6158bb771f854808669573644e9 264 PIRSF PIRSF005227 1 263 4.8E-71 T 29-03-2018 IPR011182 L-aspartate dehydrogenase GO:0009435|GO:0033735|GO:0055114 KEGG: 00760+1.4.1.21 AM354_RS19210 d75ac6158bb771f854808669573644e9 264 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 8 115 3.2E-11 T 29-03-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 AM354_RS19210 d75ac6158bb771f854808669573644e9 264 SUPERFAMILY SSF55347 120 233 1.96E-28 T 29-03-2018 AM354_RS19210 d75ac6158bb771f854808669573644e9 264 Pfam PF01958 Domain of unknown function DUF108 164 251 1.3E-30 T 29-03-2018 IPR002811 Aspartate dehydrogenase GO:0006742|GO:0016491|GO:0019363|GO:0055114 KEGG: 00760+1.4.1.21 AM354_RS19210 d75ac6158bb771f854808669573644e9 264 Gene3D G3DSA:3.30.360.10 120 233 2.5E-34 T 29-03-2018 AM354_RS19210 d75ac6158bb771f854808669573644e9 264 Hamap MF_01265 Probable L-aspartate dehydrogenase [nadX]. 1 263 32.05 T 29-03-2018 IPR020626 L-aspartate dehydrogenase, prokaryotic GO:0009435|GO:0033735|GO:0055114 KEGG: 00760+1.4.1.21 AM354_RS01385 7acd259e7f46b1429e0a0d2963ea1091 498 Gene3D G3DSA:3.40.309.10 279 477 6.1E-62 T 29-03-2018 AM354_RS01385 7acd259e7f46b1429e0a0d2963ea1091 498 SUPERFAMILY SSF53720 13 496 7.46E-148 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM354_RS01385 7acd259e7f46b1429e0a0d2963ea1091 498 Gene3D G3DSA:3.40.605.10 9 278 3.5E-85 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM354_RS01385 7acd259e7f46b1429e0a0d2963ea1091 498 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 262 269 - T 29-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AM354_RS01385 7acd259e7f46b1429e0a0d2963ea1091 498 Pfam PF00171 Aldehyde dehydrogenase family 34 490 2.3E-148 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM354_RS23650 fdda4d6ef1f94d497a86f72b4e93d2e7 561 SUPERFAMILY SSF52794 5 87 3.4E-8 T 29-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AM354_RS23650 fdda4d6ef1f94d497a86f72b4e93d2e7 561 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 107 193 4.8E-18 T 29-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AM354_RS23650 fdda4d6ef1f94d497a86f72b4e93d2e7 561 Pfam PF02378 Phosphotransferase system, EIIC 232 495 4.9E-15 T 29-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AM354_RS23650 fdda4d6ef1f94d497a86f72b4e93d2e7 561 Gene3D G3DSA:3.40.50.2300 2 84 0.0074 T 29-03-2018 AM354_RS23650 fdda4d6ef1f94d497a86f72b4e93d2e7 561 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 106 189 2.8E-39 T 29-03-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202|KEGG: 00230+2.7.1.20|MetaCyc: PWY-6619 AM354_RS23650 fdda4d6ef1f94d497a86f72b4e93d2e7 561 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 218 551 8.5E-144 T 29-03-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 AM354_RS23650 fdda4d6ef1f94d497a86f72b4e93d2e7 561 Gene3D G3DSA:3.40.50.2300 104 202 2.1E-37 T 29-03-2018 AM354_RS23650 fdda4d6ef1f94d497a86f72b4e93d2e7 561 SUPERFAMILY SSF52794 104 204 6.63E-35 T 29-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AM354_RS26180 30e1f4b599e5fe9e554a7b9663bf3152 210 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 4 173 9.2E-16 T 29-03-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain AM354_RS26180 30e1f4b599e5fe9e554a7b9663bf3152 210 SUPERFAMILY SSF52540 1 209 1.78E-41 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS26180 30e1f4b599e5fe9e554a7b9663bf3152 210 PIRSF PIRSF009320 1 210 1.2E-46 T 29-03-2018 AM354_RS26180 30e1f4b599e5fe9e554a7b9663bf3152 210 Gene3D G3DSA:3.40.50.300 2 210 4.1E-39 T 29-03-2018 AM354_RS13265 14fcae4e42692105a5c073c0b39f0073 313 Gene3D G3DSA:3.40.190.10 107 199 1.7E-38 T 29-03-2018 AM354_RS13265 14fcae4e42692105a5c073c0b39f0073 313 SUPERFAMILY SSF53850 5 218 1.66E-85 T 29-03-2018 AM354_RS13265 14fcae4e42692105a5c073c0b39f0073 313 SUPERFAMILY SSF54782 220 309 1.22E-28 T 29-03-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AM354_RS13265 14fcae4e42692105a5c073c0b39f0073 313 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 6 297 4.0E-113 T 29-03-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AM354_RS13265 14fcae4e42692105a5c073c0b39f0073 313 Gene3D G3DSA:3.40.190.10 2 106 3.4E-44 T 29-03-2018 AM354_RS13265 14fcae4e42692105a5c073c0b39f0073 313 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 6 211 6.1E-79 T 29-03-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AM354_RS13265 14fcae4e42692105a5c073c0b39f0073 313 Gene3D G3DSA:3.30.160.40 221 306 4.7E-26 T 29-03-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AM354_RS13265 14fcae4e42692105a5c073c0b39f0073 313 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 227 295 2.2E-22 T 29-03-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AM354_RS13265 14fcae4e42692105a5c073c0b39f0073 313 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 231 247 - T 29-03-2018 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AM354_RS13265 14fcae4e42692105a5c073c0b39f0073 313 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 5 297 39.805 T 29-03-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AM354_RS13265 14fcae4e42692105a5c073c0b39f0073 313 PRINTS PR00151 Porphobilinogen deaminase signature 76 95 3.1E-49 T 29-03-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AM354_RS13265 14fcae4e42692105a5c073c0b39f0073 313 PRINTS PR00151 Porphobilinogen deaminase signature 45 65 3.1E-49 T 29-03-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AM354_RS13265 14fcae4e42692105a5c073c0b39f0073 313 PRINTS PR00151 Porphobilinogen deaminase signature 230 247 3.1E-49 T 29-03-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AM354_RS13265 14fcae4e42692105a5c073c0b39f0073 313 PRINTS PR00151 Porphobilinogen deaminase signature 124 141 3.1E-49 T 29-03-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AM354_RS13265 14fcae4e42692105a5c073c0b39f0073 313 PRINTS PR00151 Porphobilinogen deaminase signature 143 160 3.1E-49 T 29-03-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AM354_RS13265 14fcae4e42692105a5c073c0b39f0073 313 PIRSF PIRSF001438 1 311 3.9E-123 T 29-03-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AM354_RS24790 6980364fd206b90e2662e7d64bad5204 66 Pfam PF10781 Dextransucrase DSRB 1 60 3.5E-37 T 29-03-2018 IPR019717 Dextransucrase DSRB AM354_RS24790 6980364fd206b90e2662e7d64bad5204 66 Hamap MF_01549 Protein DsrB [dsrB]. 1 62 26.891 T 29-03-2018 IPR019717 Dextransucrase DSRB AM354_RS13745 923fe2d969e812cc2befec6ca58b4542 662 SUPERFAMILY SSF52266 245 266 5.5E-8 T 29-03-2018 IPR013830 SGNH hydrolase-type esterase domain AM354_RS13745 923fe2d969e812cc2befec6ca58b4542 662 SUPERFAMILY SSF52266 31 172 5.5E-8 T 29-03-2018 IPR013830 SGNH hydrolase-type esterase domain AM354_RS13745 923fe2d969e812cc2befec6ca58b4542 662 SUPERFAMILY SSF52266 315 349 5.5E-8 T 29-03-2018 IPR013830 SGNH hydrolase-type esterase domain AM354_RS13745 923fe2d969e812cc2befec6ca58b4542 662 Pfam PF03797 Autotransporter beta-domain 392 640 1.0E-45 T 29-03-2018 IPR005546 Autotransporter beta-domain AM354_RS13745 923fe2d969e812cc2befec6ca58b4542 662 Gene3D G3DSA:3.40.50.1110 21 350 2.6E-45 T 29-03-2018 AM354_RS13745 923fe2d969e812cc2befec6ca58b4542 662 Gene3D G3DSA:2.40.128.130 351 662 1.5E-41 T 29-03-2018 AM354_RS13745 923fe2d969e812cc2befec6ca58b4542 662 SUPERFAMILY SSF103515 360 662 2.75E-42 T 29-03-2018 IPR005546 Autotransporter beta-domain AM354_RS13745 923fe2d969e812cc2befec6ca58b4542 662 PIRSF PIRSF037375 2 662 5.0E-228 T 29-03-2018 IPR017186 Lipase, autotransporter EstA AM354_RS13745 923fe2d969e812cc2befec6ca58b4542 662 ProSitePatterns PS01098 Lipolytic enzymes "G-D-S-L" family, serine active site. 32 43 - T 29-03-2018 IPR008265 Lipase, GDSL, active site GO:0006629|GO:0016298 Reactome: R-HSA-1482788|Reactome: R-HSA-975634 AM354_RS13745 923fe2d969e812cc2befec6ca58b4542 662 SMART SM00869 389 651 4.4E-32 T 29-03-2018 IPR005546 Autotransporter beta-domain AM354_RS13745 923fe2d969e812cc2befec6ca58b4542 662 Pfam PF00657 GDSL-like Lipase/Acylhydrolase 33 345 3.9E-10 T 29-03-2018 IPR001087 GDSL lipase/esterase GO:0016788 AM354_RS10520 3d988af6b2b0a5e2c2ab8bafa3ae7002 902 SMART SM00957 6 402 0.0 T 29-03-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 AM354_RS10520 3d988af6b2b0a5e2c2ab8bafa3ae7002 902 SUPERFAMILY SSF52540 368 415 6.77E-84 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS10520 3d988af6b2b0a5e2c2ab8bafa3ae7002 902 SUPERFAMILY SSF52540 5 228 6.77E-84 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS10520 3d988af6b2b0a5e2c2ab8bafa3ae7002 902 Pfam PF01043 SecA preprotein cross-linking domain 232 358 2.5E-39 T 29-03-2018 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 AM354_RS10520 3d988af6b2b0a5e2c2ab8bafa3ae7002 902 SUPERFAMILY SSF52540 416 618 4.89E-58 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS10520 3d988af6b2b0a5e2c2ab8bafa3ae7002 902 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 28 817 0.0 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AM354_RS10520 3d988af6b2b0a5e2c2ab8bafa3ae7002 902 PRINTS PR00906 SecA protein signature 117 127 8.0E-74 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AM354_RS10520 3d988af6b2b0a5e2c2ab8bafa3ae7002 902 PRINTS PR00906 SecA protein signature 63 87 8.0E-74 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AM354_RS10520 3d988af6b2b0a5e2c2ab8bafa3ae7002 902 PRINTS PR00906 SecA protein signature 101 115 8.0E-74 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AM354_RS10520 3d988af6b2b0a5e2c2ab8bafa3ae7002 902 PRINTS PR00906 SecA protein signature 413 426 8.0E-74 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AM354_RS10520 3d988af6b2b0a5e2c2ab8bafa3ae7002 902 PRINTS PR00906 SecA protein signature 170 190 8.0E-74 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AM354_RS10520 3d988af6b2b0a5e2c2ab8bafa3ae7002 902 PRINTS PR00906 SecA protein signature 339 361 8.0E-74 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AM354_RS10520 3d988af6b2b0a5e2c2ab8bafa3ae7002 902 PRINTS PR00906 SecA protein signature 376 393 8.0E-74 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AM354_RS10520 3d988af6b2b0a5e2c2ab8bafa3ae7002 902 Gene3D G3DSA:1.10.3060.10 635 731 9.7E-29 T 29-03-2018 AM354_RS10520 3d988af6b2b0a5e2c2ab8bafa3ae7002 902 SUPERFAMILY SSF81767 227 368 1.44E-44 T 29-03-2018 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 AM354_RS10520 3d988af6b2b0a5e2c2ab8bafa3ae7002 902 Gene3D G3DSA:3.10.450.50 732 902 1.1E-56 T 29-03-2018 AM354_RS10520 3d988af6b2b0a5e2c2ab8bafa3ae7002 902 Pfam PF07517 SecA DEAD-like domain 7 402 3.5E-132 T 29-03-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 AM354_RS10520 3d988af6b2b0a5e2c2ab8bafa3ae7002 902 SMART SM00958 228 358 4.1E-83 T 29-03-2018 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 AM354_RS10520 3d988af6b2b0a5e2c2ab8bafa3ae7002 902 Pfam PF07516 SecA Wing and Scaffold domain 617 830 1.6E-69 T 29-03-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 AM354_RS10520 3d988af6b2b0a5e2c2ab8bafa3ae7002 902 Gene3D G3DSA:3.40.50.300 417 634 3.1E-54 T 29-03-2018 AM354_RS10520 3d988af6b2b0a5e2c2ab8bafa3ae7002 902 Pfam PF02810 SEC-C motif 882 900 1.1E-10 T 29-03-2018 IPR004027 SEC-C motif AM354_RS10520 3d988af6b2b0a5e2c2ab8bafa3ae7002 902 Gene3D G3DSA:3.40.50.300 302 416 5.9E-8 T 29-03-2018 AM354_RS10520 3d988af6b2b0a5e2c2ab8bafa3ae7002 902 Gene3D G3DSA:3.40.50.300 9 268 2.4E-56 T 29-03-2018 AM354_RS10520 3d988af6b2b0a5e2c2ab8bafa3ae7002 902 Hamap MF_01382 Protein translocase subunit SecA [secA]. 5 832 20.019 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AM354_RS10520 3d988af6b2b0a5e2c2ab8bafa3ae7002 902 SUPERFAMILY SSF81886 620 840 1.7E-85 T 29-03-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 AM354_RS10520 3d988af6b2b0a5e2c2ab8bafa3ae7002 902 SUPERFAMILY SSF81886 878 890 1.7E-85 T 29-03-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 AM354_RS10520 3d988af6b2b0a5e2c2ab8bafa3ae7002 902 ProSitePatterns PS01312 SecA family signature. 500 515 - T 29-03-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 AM354_RS12225 f2d4c3f0dfb506c3b6d3c6acc9920445 117 Pfam PF04343 Protein of unknown function, DUF488 6 113 1.4E-25 T 29-03-2018 IPR007438 Protein of unknown function DUF488 AM354_RS04170 887f1d22689e8cec70b8820f19504a1f 366 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 7 361 2.3E-156 T 29-03-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 Reactome: R-HSA-6787450 AM354_RS04170 887f1d22689e8cec70b8820f19504a1f 366 Gene3D G3DSA:3.40.50.620 1 213 1.8E-66 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS04170 887f1d22689e8cec70b8820f19504a1f 366 SUPERFAMILY SSF52402 5 296 1.98E-58 T 29-03-2018 AM354_RS04170 887f1d22689e8cec70b8820f19504a1f 366 Pfam PF03054 tRNA methyl transferase 7 361 2.2E-144 T 29-03-2018 AM354_RS04170 887f1d22689e8cec70b8820f19504a1f 366 Gene3D G3DSA:2.30.30.280 214 281 3.3E-29 T 29-03-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 Reactome: R-HSA-6787450 AM354_RS04170 887f1d22689e8cec70b8820f19504a1f 366 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 7 362 41.166 T 29-03-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 Reactome: R-HSA-6787450 AM354_RS04170 887f1d22689e8cec70b8820f19504a1f 366 Gene3D G3DSA:2.40.30.10 283 365 2.1E-29 T 29-03-2018 AM354_RS05775 21ae8fc5802b40e800aa4bbddf380a9a 759 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 561 579 1.2E-36 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 AM354_RS05775 21ae8fc5802b40e800aa4bbddf380a9a 759 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 594 608 1.2E-36 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 AM354_RS05775 21ae8fc5802b40e800aa4bbddf380a9a 759 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 490 508 1.2E-36 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 AM354_RS05775 21ae8fc5802b40e800aa4bbddf380a9a 759 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 532 550 1.2E-36 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 AM354_RS05775 21ae8fc5802b40e800aa4bbddf380a9a 759 Pfam PF07724 AAA domain (Cdc48 subfamily) 485 646 1.2E-49 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AM354_RS05775 21ae8fc5802b40e800aa4bbddf380a9a 759 SMART SM00382 486 653 1.8E-6 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS05775 21ae8fc5802b40e800aa4bbddf380a9a 759 SMART SM00382 205 349 2.1E-13 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS05775 21ae8fc5802b40e800aa4bbddf380a9a 759 SMART SM01086 652 743 6.3E-35 T 29-03-2018 IPR019489 Clp ATPase, C-terminal AM354_RS05775 21ae8fc5802b40e800aa4bbddf380a9a 759 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 3 733 0.0 T 29-03-2018 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0004176 AM354_RS05775 21ae8fc5802b40e800aa4bbddf380a9a 759 SUPERFAMILY SSF81923 1 141 1.96E-58 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 AM354_RS05775 21ae8fc5802b40e800aa4bbddf380a9a 759 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 301 313 - T 29-03-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 AM354_RS05775 21ae8fc5802b40e800aa4bbddf380a9a 759 Gene3D G3DSA:1.10.8.60 350 436 5.7E-27 T 29-03-2018 AM354_RS05775 21ae8fc5802b40e800aa4bbddf380a9a 759 Gene3D G3DSA:3.40.50.300 441 651 3.3E-42 T 29-03-2018 AM354_RS05775 21ae8fc5802b40e800aa4bbddf380a9a 759 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 210 341 5.0E-13 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AM354_RS05775 21ae8fc5802b40e800aa4bbddf380a9a 759 SUPERFAMILY SSF52540 436 742 8.56E-77 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS05775 21ae8fc5802b40e800aa4bbddf380a9a 759 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 517 535 - T 29-03-2018 IPR028299 ClpA/B, conserved site 2 AM354_RS05775 21ae8fc5802b40e800aa4bbddf380a9a 759 SUPERFAMILY SSF52540 168 424 1.26E-68 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS05775 21ae8fc5802b40e800aa4bbddf380a9a 759 Gene3D G3DSA:1.10.8.60 652 757 3.1E-25 T 29-03-2018 AM354_RS05775 21ae8fc5802b40e800aa4bbddf380a9a 759 Gene3D G3DSA:1.10.1780.10 1 143 3.3E-28 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 AM354_RS05775 21ae8fc5802b40e800aa4bbddf380a9a 759 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 652 732 8.4E-24 T 29-03-2018 IPR019489 Clp ATPase, C-terminal AM354_RS05775 21ae8fc5802b40e800aa4bbddf380a9a 759 Gene3D G3DSA:3.40.50.300 164 349 8.8E-29 T 29-03-2018 AM354_RS05775 21ae8fc5802b40e800aa4bbddf380a9a 759 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 13 62 5.1E-15 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 AM354_RS10415 1e5fb6190c12036c118601ed4a3ca5d0 908 SMART SM00448 664 777 1.9E-31 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS10415 1e5fb6190c12036c118601ed4a3ca5d0 908 Pfam PF01627 Hpt domain 816 894 2.2E-11 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM354_RS10415 1e5fb6190c12036c118601ed4a3ca5d0 908 SMART SM00073 806 901 2.3E-11 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM354_RS10415 1e5fb6190c12036c118601ed4a3ca5d0 908 SMART SM00304 199 251 1.3E-7 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM354_RS10415 1e5fb6190c12036c118601ed4a3ca5d0 908 PRINTS PR00344 Bacterial sensor protein C-terminal signature 444 458 6.7E-13 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS10415 1e5fb6190c12036c118601ed4a3ca5d0 908 PRINTS PR00344 Bacterial sensor protein C-terminal signature 462 472 6.7E-13 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS10415 1e5fb6190c12036c118601ed4a3ca5d0 908 PRINTS PR00344 Bacterial sensor protein C-terminal signature 479 497 6.7E-13 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS10415 1e5fb6190c12036c118601ed4a3ca5d0 908 PRINTS PR00344 Bacterial sensor protein C-terminal signature 503 516 6.7E-13 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS10415 1e5fb6190c12036c118601ed4a3ca5d0 908 SUPERFAMILY SSF47226 760 895 2.09E-22 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM354_RS10415 1e5fb6190c12036c118601ed4a3ca5d0 908 SUPERFAMILY SSF47384 276 357 1.88E-22 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS10415 1e5fb6190c12036c118601ed4a3ca5d0 908 Gene3D G3DSA:3.30.565.10 360 523 1.6E-47 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS10415 1e5fb6190c12036c118601ed4a3ca5d0 908 Gene3D G3DSA:1.20.120.160 793 905 3.8E-15 T 29-03-2018 AM354_RS10415 1e5fb6190c12036c118601ed4a3ca5d0 908 SUPERFAMILY SSF52172 663 781 1.85E-33 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS10415 1e5fb6190c12036c118601ed4a3ca5d0 908 Pfam PF00512 His Kinase A (phospho-acceptor) domain 292 356 6.2E-20 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS10415 1e5fb6190c12036c118601ed4a3ca5d0 908 Pfam PF00072 Response regulator receiver domain 666 775 1.5E-26 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS10415 1e5fb6190c12036c118601ed4a3ca5d0 908 SUPERFAMILY SSF158472 199 248 4.84E-5 T 29-03-2018 AM354_RS10415 1e5fb6190c12036c118601ed4a3ca5d0 908 SMART SM00387 403 519 5.9E-34 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS10415 1e5fb6190c12036c118601ed4a3ca5d0 908 Gene3D G3DSA:3.40.50.2300 650 792 9.4E-34 T 29-03-2018 AM354_RS10415 1e5fb6190c12036c118601ed4a3ca5d0 908 SUPERFAMILY SSF55874 345 515 1.13E-43 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS10415 1e5fb6190c12036c118601ed4a3ca5d0 908 SMART SM00388 291 356 5.6E-25 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS10415 1e5fb6190c12036c118601ed4a3ca5d0 908 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 403 517 1.8E-29 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS10415 1e5fb6190c12036c118601ed4a3ca5d0 908 Gene3D G3DSA:1.10.287.130 281 352 4.1E-21 T 29-03-2018 AM354_RS10415 1e5fb6190c12036c118601ed4a3ca5d0 908 Pfam PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) 31 176 2.2E-58 T 29-03-2018 IPR019247 Histidine kinase BarA, N-terminal AM354_RS10965 ad0d8901ca5832e8c352d878f6e04144 172 TIGRFAM TIGR00258 TIGR00258: inosine/xanthosine triphosphatase 7 170 8.0E-47 T 29-03-2018 IPR002786 Non-canonical purine NTP phosphatase AM354_RS10965 ad0d8901ca5832e8c352d878f6e04144 172 Pfam PF01931 Protein of unknown function DUF84 7 165 4.0E-50 T 29-03-2018 IPR026533 Non-canonical purine NTP phosphatase/PRRC1 AM354_RS10965 ad0d8901ca5832e8c352d878f6e04144 172 SUPERFAMILY SSF52972 1 167 4.8E-54 T 29-03-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AM354_RS10965 ad0d8901ca5832e8c352d878f6e04144 172 Gene3D G3DSA:3.90.950.10 1 170 3.4E-55 T 29-03-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AM354_RS10965 ad0d8901ca5832e8c352d878f6e04144 172 Hamap MF_00648 Non-canonical purine NTP phosphatase. 2 171 28.055 T 29-03-2018 IPR002786 Non-canonical purine NTP phosphatase AM354_RS08390 b30a013867c61e0371380b870bd0ceb4 219 PIRSF PIRSF016262 2 215 1.6E-56 T 29-03-2018 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AM354_RS08390 b30a013867c61e0371380b870bd0ceb4 219 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 28 204 5.2E-72 T 29-03-2018 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AM354_RS08390 b30a013867c61e0371380b870bd0ceb4 219 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 75 128 1.0E-20 T 29-03-2018 AM354_RS08390 b30a013867c61e0371380b870bd0ceb4 219 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 71 86 - T 29-03-2018 IPR020605 Octanoyltransferase, conserved site GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 AM354_RS08390 b30a013867c61e0371380b870bd0ceb4 219 SUPERFAMILY SSF55681 5 206 5.14E-68 T 29-03-2018 AM354_RS08390 b30a013867c61e0371380b870bd0ceb4 219 Hamap MF_00013 Octanoyltransferase [lipB]. 5 206 36.987 T 29-03-2018 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AM354_RS08390 b30a013867c61e0371380b870bd0ceb4 219 Pfam PF03099 Biotin/lipoate A/B protein ligase family 63 159 6.2E-6 T 29-03-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 AM354_RS08390 b30a013867c61e0371380b870bd0ceb4 219 Gene3D G3DSA:3.30.930.10 2 204 7.9E-60 T 29-03-2018 AM354_RS11930 6c06f84ee2518cf2cdcff6bc52cb404a 323 SUPERFAMILY SSF111369 38 94 2.35E-7 T 29-03-2018 AM354_RS11930 6c06f84ee2518cf2cdcff6bc52cb404a 323 Gene3D G3DSA:2.40.50.100 160 231 1.3E-6 T 29-03-2018 AM354_RS11930 6c06f84ee2518cf2cdcff6bc52cb404a 323 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 131 284 1.9E-10 T 29-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AM354_RS11930 6c06f84ee2518cf2cdcff6bc52cb404a 323 Gene3D G3DSA:1.10.287.470 107 159 2.0E-12 T 29-03-2018 AM354_RS11930 6c06f84ee2518cf2cdcff6bc52cb404a 323 SUPERFAMILY SSF111369 176 253 1.18E-6 T 29-03-2018 AM354_RS11930 6c06f84ee2518cf2cdcff6bc52cb404a 323 Pfam PF13533 Biotin-lipoyl like 40 85 4.8E-11 T 29-03-2018 AM354_RS11930 6c06f84ee2518cf2cdcff6bc52cb404a 323 Gene3D G3DSA:2.40.50.100 38 101 4.8E-13 T 29-03-2018 AM354_RS20965 b7ab18d050f4a582770ebc9aa4637f3d 227 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 4 221 40.665 T 29-03-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AM354_RS20965 b7ab18d050f4a582770ebc9aa4637f3d 227 Gene3D G3DSA:3.40.470.10 1 226 3.7E-106 T 29-03-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AM354_RS20965 b7ab18d050f4a582770ebc9aa4637f3d 227 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 6 214 5.2E-89 T 29-03-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AM354_RS20965 b7ab18d050f4a582770ebc9aa4637f3d 227 Pfam PF03167 Uracil DNA glycosylase superfamily 54 209 6.2E-25 T 29-03-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AM354_RS20965 b7ab18d050f4a582770ebc9aa4637f3d 227 SUPERFAMILY SSF52141 5 220 2.18E-97 T 29-03-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AM354_RS20965 b7ab18d050f4a582770ebc9aa4637f3d 227 SMART SM00986 49 210 4.0E-41 T 29-03-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AM354_RS20965 b7ab18d050f4a582770ebc9aa4637f3d 227 SMART SM00987 49 210 4.0E-41 T 29-03-2018 AM354_RS20965 b7ab18d050f4a582770ebc9aa4637f3d 227 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 57 66 - T 29-03-2018 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AM354_RS16075 e48c0c4579ecb6173da341e62b7e0a1a 130 SUPERFAMILY SSF56047 5 129 2.35E-46 T 29-03-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16075 e48c0c4579ecb6173da341e62b7e0a1a 130 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 130 31.746 T 29-03-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16075 e48c0c4579ecb6173da341e62b7e0a1a 130 Pfam PF00410 Ribosomal protein S8 5 129 2.1E-48 T 29-03-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16075 e48c0c4579ecb6173da341e62b7e0a1a 130 Gene3D G3DSA:3.30.1490.10 74 129 8.0E-23 T 29-03-2018 AM354_RS16075 e48c0c4579ecb6173da341e62b7e0a1a 130 Gene3D G3DSA:3.30.1370.30 1 66 2.6E-24 T 29-03-2018 AM354_RS16075 e48c0c4579ecb6173da341e62b7e0a1a 130 ProSitePatterns PS00053 Ribosomal protein S8 signature. 100 117 - T 29-03-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS00950 e305f76379d02582654dfc1ff4bcf0af 499 ProSitePatterns PS00211 ABC transporters family signature. 400 414 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS00950 e305f76379d02582654dfc1ff4bcf0af 499 Pfam PF00005 ABC transporter 22 171 2.8E-29 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS00950 e305f76379d02582654dfc1ff4bcf0af 499 Pfam PF00005 ABC transporter 274 427 4.4E-21 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS00950 e305f76379d02582654dfc1ff4bcf0af 499 SUPERFAMILY SSF52540 250 482 1.78E-45 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS00950 e305f76379d02582654dfc1ff4bcf0af 499 SUPERFAMILY SSF52540 6 226 7.38E-59 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS00950 e305f76379d02582654dfc1ff4bcf0af 499 Gene3D G3DSA:3.40.50.300 4 230 2.2E-54 T 29-03-2018 AM354_RS00950 e305f76379d02582654dfc1ff4bcf0af 499 Gene3D G3DSA:3.40.50.300 254 486 5.7E-39 T 29-03-2018 AM354_RS00950 e305f76379d02582654dfc1ff4bcf0af 499 SMART SM00382 283 496 0.0015 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS00950 e305f76379d02582654dfc1ff4bcf0af 499 SMART SM00382 31 219 6.1E-13 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS03055 ff77e7393f70d21f19e5126271c654e0 614 SUPERFAMILY SSF51120 354 436 5.62E-9 T 29-03-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AM354_RS03055 ff77e7393f70d21f19e5126271c654e0 614 SUPERFAMILY SSF51120 483 612 7.98E-15 T 29-03-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AM354_RS03055 ff77e7393f70d21f19e5126271c654e0 614 PRINTS PR00313 NodO calcium binding signature 509 517 1.2E-8 T 29-03-2018 AM354_RS03055 ff77e7393f70d21f19e5126271c654e0 614 PRINTS PR00313 NodO calcium binding signature 380 391 1.2E-8 T 29-03-2018 AM354_RS03055 ff77e7393f70d21f19e5126271c654e0 614 PRINTS PR00313 NodO calcium binding signature 491 499 1.2E-8 T 29-03-2018 AM354_RS03055 ff77e7393f70d21f19e5126271c654e0 614 PRINTS PR00313 NodO calcium binding signature 528 537 1.2E-8 T 29-03-2018 AM354_RS03055 ff77e7393f70d21f19e5126271c654e0 614 SUPERFAMILY SSF53474 131 264 3.46E-13 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS03055 ff77e7393f70d21f19e5126271c654e0 614 Gene3D G3DSA:2.150.10.10 483 613 5.3E-12 T 29-03-2018 AM354_RS03055 ff77e7393f70d21f19e5126271c654e0 614 Gene3D G3DSA:3.40.50.1820 11 401 3.5E-11 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS06070 59c1e213dc943a8cde53a26d725e00c1 844 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 314 324 - T 29-03-2018 IPR018030 Fimbrial membrane usher, conserved site AM354_RS06070 59c1e213dc943a8cde53a26d725e00c1 844 SUPERFAMILY SSF141729 35 155 4.71E-31 T 29-03-2018 AM354_RS06070 59c1e213dc943a8cde53a26d725e00c1 844 Pfam PF00577 Outer membrane usher protein 197 746 2.3E-192 T 29-03-2018 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 AM354_RS06070 59c1e213dc943a8cde53a26d725e00c1 844 Pfam PF13953 PapC C-terminal domain 758 815 9.4E-14 T 29-03-2018 IPR025949 PapC-like, C-terminal domain AM354_RS06070 59c1e213dc943a8cde53a26d725e00c1 844 Pfam PF13954 PapC N-terminal domain 36 181 5.0E-40 T 29-03-2018 IPR025885 PapC, N-terminal domain GO:0005515 AM354_RS06985 499c533cd28fa60e343c7c03da770fd4 217 SUPERFAMILY SSF46785 18 197 3.66E-26 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS06985 499c533cd28fa60e343c7c03da770fd4 217 Gene3D G3DSA:1.10.10.10 12 167 1.5E-9 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS11830 c329fa92dc75191dc8641f64a48c86fc 361 Pfam PF05861 Bacterial phosphonate metabolism protein (PhnI) 1 351 5.3E-157 T 29-03-2018 IPR008773 Phosphonate metabolism protein PhnI GO:0019634 AM354_RS11830 c329fa92dc75191dc8641f64a48c86fc 361 PIRSF PIRSF007313 1 361 3.3E-166 T 29-03-2018 IPR008773 Phosphonate metabolism protein PhnI GO:0019634 AM354_RS02290 dff69bc7e55bed7badb20de1cc73f6ee 506 Gene3D G3DSA:3.40.605.10 16 277 2.4E-87 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM354_RS02290 dff69bc7e55bed7badb20de1cc73f6ee 506 SUPERFAMILY SSF53720 12 497 7.33E-160 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM354_RS02290 dff69bc7e55bed7badb20de1cc73f6ee 506 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 261 268 - T 29-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AM354_RS02290 dff69bc7e55bed7badb20de1cc73f6ee 506 Gene3D G3DSA:3.40.309.10 278 480 1.4E-65 T 29-03-2018 AM354_RS02290 dff69bc7e55bed7badb20de1cc73f6ee 506 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 294 305 - T 29-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AM354_RS02290 dff69bc7e55bed7badb20de1cc73f6ee 506 Pfam PF00171 Aldehyde dehydrogenase family 28 493 8.9E-159 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM354_RS18885 75bb6eb69e13ddd3cd2b8760a42e507f 316 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 124 296 2.3E-80 T 29-03-2018 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 AM354_RS18885 75bb6eb69e13ddd3cd2b8760a42e507f 316 SUPERFAMILY SSF52440 2 122 6.91E-46 T 29-03-2018 IPR016185 Pre-ATP-grasp domain AM354_RS18885 75bb6eb69e13ddd3cd2b8760a42e507f 316 TIGRFAM TIGR01380 glut_syn: glutathione synthase 2 312 1.3E-140 T 29-03-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 AM354_RS18885 75bb6eb69e13ddd3cd2b8760a42e507f 316 Gene3D G3DSA:3.30.1490.20 138 191 8.0E-23 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AM354_RS18885 75bb6eb69e13ddd3cd2b8760a42e507f 316 Gene3D G3DSA:3.30.470.20 192 300 3.8E-16 T 29-03-2018 AM354_RS18885 75bb6eb69e13ddd3cd2b8760a42e507f 316 Gene3D G3DSA:3.40.50.20 2 129 3.5E-52 T 29-03-2018 AM354_RS18885 75bb6eb69e13ddd3cd2b8760a42e507f 316 Hamap MF_00162 Glutathione synthetase [gshB]. 1 316 183.903 T 29-03-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 AM354_RS18885 75bb6eb69e13ddd3cd2b8760a42e507f 316 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 2 120 7.9E-48 T 29-03-2018 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 AM354_RS18885 75bb6eb69e13ddd3cd2b8760a42e507f 316 SUPERFAMILY SSF56059 123 312 6.19E-60 T 29-03-2018 AM354_RS02330 55eb9fde8d06875f3d9323de37975bfa 151 Gene3D G3DSA:3.10.129.10 4 151 1.3E-36 T 29-03-2018 AM354_RS02330 55eb9fde8d06875f3d9323de37975bfa 151 Pfam PF07977 FabA-like domain 17 144 5.1E-21 T 29-03-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AM354_RS02330 55eb9fde8d06875f3d9323de37975bfa 151 SUPERFAMILY SSF54637 8 149 1.19E-32 T 29-03-2018 IPR029069 HotDog domain AM354_RS20960 cc58c50414ac25c1ecc489dd1a59967c 194 SUPERFAMILY SSF51064 136 192 5.36E-19 T 29-03-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 AM354_RS20960 cc58c50414ac25c1ecc489dd1a59967c 194 PRINTS PR00773 GrpE protein signature 60 76 1.2E-26 T 29-03-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AM354_RS20960 cc58c50414ac25c1ecc489dd1a59967c 194 PRINTS PR00773 GrpE protein signature 88 103 1.2E-26 T 29-03-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AM354_RS20960 cc58c50414ac25c1ecc489dd1a59967c 194 PRINTS PR00773 GrpE protein signature 170 189 1.2E-26 T 29-03-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AM354_RS20960 cc58c50414ac25c1ecc489dd1a59967c 194 PRINTS PR00773 GrpE protein signature 143 158 1.2E-26 T 29-03-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AM354_RS20960 cc58c50414ac25c1ecc489dd1a59967c 194 Hamap MF_01151 Protein GrpE [grpE]. 4 191 21.309 T 29-03-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AM354_RS20960 cc58c50414ac25c1ecc489dd1a59967c 194 Gene3D G3DSA:2.30.22.10 135 191 1.4E-20 T 29-03-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 AM354_RS20960 cc58c50414ac25c1ecc489dd1a59967c 194 Pfam PF01025 GrpE 34 191 1.3E-48 T 29-03-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AM354_RS20960 cc58c50414ac25c1ecc489dd1a59967c 194 ProSitePatterns PS01071 grpE protein signature. 146 189 - T 29-03-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AM354_RS20960 cc58c50414ac25c1ecc489dd1a59967c 194 Gene3D G3DSA:3.90.20.20 2 134 2.5E-28 T 29-03-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 AM354_RS20960 cc58c50414ac25c1ecc489dd1a59967c 194 SUPERFAMILY SSF58014 43 135 1.57E-26 T 29-03-2018 AM354_RS00110 9568244b0fa54c8e4eb6ce040404ea6f 491 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 176 182 - T 29-03-2018 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AM354_RS00110 9568244b0fa54c8e4eb6ce040404ea6f 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 236 252 5.9E-47 T 29-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AM354_RS00110 9568244b0fa54c8e4eb6ce040404ea6f 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 166 194 5.9E-47 T 29-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AM354_RS00110 9568244b0fa54c8e4eb6ce040404ea6f 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 218 235 5.9E-47 T 29-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AM354_RS00110 9568244b0fa54c8e4eb6ce040404ea6f 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 327 353 5.9E-47 T 29-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AM354_RS00110 9568244b0fa54c8e4eb6ce040404ea6f 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 142 155 5.9E-47 T 29-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AM354_RS00110 9568244b0fa54c8e4eb6ce040404ea6f 491 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 13 186 2.4E-59 T 29-03-2018 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AM354_RS00110 9568244b0fa54c8e4eb6ce040404ea6f 491 SUPERFAMILY SSF55347 176 488 3.6E-113 T 29-03-2018 AM354_RS00110 9568244b0fa54c8e4eb6ce040404ea6f 491 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 188 488 7.4E-116 T 29-03-2018 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AM354_RS00110 9568244b0fa54c8e4eb6ce040404ea6f 491 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 9 489 90.775 T 29-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AM354_RS00110 9568244b0fa54c8e4eb6ce040404ea6f 491 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 9 489 5.2E-200 T 29-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AM354_RS00110 9568244b0fa54c8e4eb6ce040404ea6f 491 Gene3D G3DSA:3.30.360.10 188 490 7.0E-126 T 29-03-2018 AM354_RS00110 9568244b0fa54c8e4eb6ce040404ea6f 491 PIRSF PIRSF000110 1 491 4.9E-183 T 29-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AM354_RS00110 9568244b0fa54c8e4eb6ce040404ea6f 491 SUPERFAMILY SSF51735 5 189 2.17E-57 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS00110 9568244b0fa54c8e4eb6ce040404ea6f 491 Gene3D G3DSA:3.40.50.720 7 187 2.8E-63 T 29-03-2018 AM354_RS07080 4f8c70e47958bc27b76a22ddaf736b06 479 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 66 6.3E-16 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS07080 4f8c70e47958bc27b76a22ddaf736b06 479 SUPERFAMILY SSF46785 1 70 5.44E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS07080 4f8c70e47958bc27b76a22ddaf736b06 479 Gene3D G3DSA:3.90.1150.10 371 467 2.2E-26 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS07080 4f8c70e47958bc27b76a22ddaf736b06 479 SMART SM00345 7 66 6.0E-22 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS07080 4f8c70e47958bc27b76a22ddaf736b06 479 Gene3D G3DSA:3.40.640.10 122 370 1.6E-52 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS07080 4f8c70e47958bc27b76a22ddaf736b06 479 Pfam PF00155 Aminotransferase class I and II 106 461 2.0E-38 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM354_RS07080 4f8c70e47958bc27b76a22ddaf736b06 479 Gene3D G3DSA:1.10.10.10 1 68 1.0E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS07080 4f8c70e47958bc27b76a22ddaf736b06 479 SUPERFAMILY SSF53383 80 464 1.25E-97 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS08120 ae0eda6d04d036bcdf260ee5259eaad8 689 Gene3D G3DSA:3.40.1110.10 322 449 9.8E-25 T 29-03-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AM354_RS08120 ae0eda6d04d036bcdf260ee5259eaad8 689 Gene3D G3DSA:2.70.150.10 21 208 4.2E-24 T 29-03-2018 AM354_RS08120 ae0eda6d04d036bcdf260ee5259eaad8 689 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 469 479 3.9E-24 T 29-03-2018 AM354_RS08120 ae0eda6d04d036bcdf260ee5259eaad8 689 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 154 168 3.9E-24 T 29-03-2018 AM354_RS08120 ae0eda6d04d036bcdf260ee5259eaad8 689 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 522 541 3.9E-24 T 29-03-2018 AM354_RS08120 ae0eda6d04d036bcdf260ee5259eaad8 689 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 311 325 3.9E-24 T 29-03-2018 AM354_RS08120 ae0eda6d04d036bcdf260ee5259eaad8 689 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 545 557 3.9E-24 T 29-03-2018 AM354_RS08120 ae0eda6d04d036bcdf260ee5259eaad8 689 Pfam PF00702 haloacid dehalogenase-like hydrolase 307 536 9.3E-36 T 29-03-2018 AM354_RS08120 ae0eda6d04d036bcdf260ee5259eaad8 689 SUPERFAMILY SSF81653 111 207 1.31E-22 T 29-03-2018 IPR008250 P-type ATPase, A domain Reactome: R-HSA-936837 AM354_RS08120 ae0eda6d04d036bcdf260ee5259eaad8 689 SUPERFAMILY SSF56784 299 323 1.08E-37 T 29-03-2018 IPR023214 HAD-like domain AM354_RS08120 ae0eda6d04d036bcdf260ee5259eaad8 689 SUPERFAMILY SSF56784 441 565 1.08E-37 T 29-03-2018 IPR023214 HAD-like domain AM354_RS08120 ae0eda6d04d036bcdf260ee5259eaad8 689 SUPERFAMILY SSF56784 391 410 1.08E-37 T 29-03-2018 IPR023214 HAD-like domain AM354_RS08120 ae0eda6d04d036bcdf260ee5259eaad8 689 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 379 610 1.7E-47 T 29-03-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AM354_RS08120 ae0eda6d04d036bcdf260ee5259eaad8 689 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 72 347 4.1E-35 T 29-03-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AM354_RS08120 ae0eda6d04d036bcdf260ee5259eaad8 689 SUPERFAMILY SSF81665 208 305 1.7E-11 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 AM354_RS08120 ae0eda6d04d036bcdf260ee5259eaad8 689 SUPERFAMILY SSF81665 30 103 1.7E-11 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 AM354_RS08120 ae0eda6d04d036bcdf260ee5259eaad8 689 Pfam PF00122 E1-E2 ATPase 113 288 1.9E-33 T 29-03-2018 AM354_RS08120 ae0eda6d04d036bcdf260ee5259eaad8 689 SUPERFAMILY SSF81660 322 456 3.92E-37 T 29-03-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AM354_RS08120 ae0eda6d04d036bcdf260ee5259eaad8 689 TIGRFAM TIGR01497 kdpB: K+-transporting ATPase, B subunit 3 682 0.0 T 29-03-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 AM354_RS08120 ae0eda6d04d036bcdf260ee5259eaad8 689 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 313 319 - T 29-03-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 AM354_RS08120 ae0eda6d04d036bcdf260ee5259eaad8 689 Hamap MF_00285 Potassium-transporting ATPase ATP-binding subunit [kdpB]. 8 686 41.37 T 29-03-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 AM354_RS08120 ae0eda6d04d036bcdf260ee5259eaad8 689 Gene3D G3DSA:3.40.50.1000 450 583 2.0E-33 T 29-03-2018 IPR023214 HAD-like domain AM354_RS13850 b0c6f31ecc4998c54ccffee4eee4474f 271 Gene3D G3DSA:3.40.50.1000 1 271 2.9E-48 T 29-03-2018 IPR023214 HAD-like domain AM354_RS13850 b0c6f31ecc4998c54ccffee4eee4474f 271 ProSitePatterns PS01229 Hypothetical cof family signature 2. 218 240 - T 29-03-2018 AM354_RS13850 b0c6f31ecc4998c54ccffee4eee4474f 271 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 264 3.4E-68 T 29-03-2018 IPR023214 HAD-like domain AM354_RS13850 b0c6f31ecc4998c54ccffee4eee4474f 271 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 237 2.2E-28 T 29-03-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 AM354_RS13850 b0c6f31ecc4998c54ccffee4eee4474f 271 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 264 2.8E-69 T 29-03-2018 IPR000150 Cof family GO:0016787 AM354_RS13850 b0c6f31ecc4998c54ccffee4eee4474f 271 SUPERFAMILY SSF56784 1 269 8.53E-78 T 29-03-2018 IPR023214 HAD-like domain AM354_RS20410 4f33fd6d37febbf7176f1c837d493b06 362 Gene3D G3DSA:3.40.1280.10 197 362 5.2E-37 T 29-03-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AM354_RS20410 4f33fd6d37febbf7176f1c837d493b06 362 PIRSF PIRSF006280 1 362 6.3E-168 T 29-03-2018 IPR016479 tRNA/rRNA methyltransferase, YfiF, predicted GO:0008168 AM354_RS20410 4f33fd6d37febbf7176f1c837d493b06 362 SMART SM00967 126 201 1.1E-9 T 29-03-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 AM354_RS20410 4f33fd6d37febbf7176f1c837d493b06 362 Pfam PF00588 SpoU rRNA Methylase family 216 353 8.0E-32 T 29-03-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AM354_RS20410 4f33fd6d37febbf7176f1c837d493b06 362 SUPERFAMILY SSF55315 120 196 3.88E-10 T 29-03-2018 IPR029064 50S ribosomal protein L30e-like AM354_RS20410 4f33fd6d37febbf7176f1c837d493b06 362 Gene3D G3DSA:3.30.1330.30 113 196 2.3E-9 T 29-03-2018 IPR029064 50S ribosomal protein L30e-like AM354_RS20410 4f33fd6d37febbf7176f1c837d493b06 362 SUPERFAMILY SSF75217 208 361 1.18E-39 T 29-03-2018 IPR029028 Alpha/beta knot methyltransferases AM354_RS20410 4f33fd6d37febbf7176f1c837d493b06 362 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 127 199 1.4E-12 T 29-03-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 AM354_RS19535 554704614e77ae3f19843e1b07d958c0 441 ProSitePatterns PS00217 Sugar transport proteins signature 2. 139 164 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM354_RS19535 554704614e77ae3f19843e1b07d958c0 441 Pfam PF07690 Major Facilitator Superfamily 40 399 1.9E-29 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS19535 554704614e77ae3f19843e1b07d958c0 441 SUPERFAMILY SSF103473 27 440 5.89E-62 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS19535 554704614e77ae3f19843e1b07d958c0 441 Gene3D G3DSA:1.20.1250.20 27 236 1.3E-20 T 29-03-2018 AM354_RS19535 554704614e77ae3f19843e1b07d958c0 441 Gene3D G3DSA:1.20.1250.20 237 441 1.2E-25 T 29-03-2018 AM354_RS23790 e7acd423675889585f0dbe9cf2fccb30 355 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 32 146 1.5E-25 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AM354_RS23790 e7acd423675889585f0dbe9cf2fccb30 355 SMART SM00829 15 353 0.0037 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AM354_RS23790 e7acd423675889585f0dbe9cf2fccb30 355 SUPERFAMILY SSF50129 4 188 2.93E-43 T 29-03-2018 IPR011032 GroES-like AM354_RS23790 e7acd423675889585f0dbe9cf2fccb30 355 Gene3D G3DSA:3.40.50.10730 167 297 9.9E-26 T 29-03-2018 AM354_RS23790 e7acd423675889585f0dbe9cf2fccb30 355 Pfam PF00107 Zinc-binding dehydrogenase 189 306 1.2E-23 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AM354_RS23790 e7acd423675889585f0dbe9cf2fccb30 355 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 71 85 - T 29-03-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AM354_RS23790 e7acd423675889585f0dbe9cf2fccb30 355 SUPERFAMILY SSF51735 156 311 1.97E-36 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS23790 e7acd423675889585f0dbe9cf2fccb30 355 Gene3D G3DSA:3.90.180.10 5 166 1.5E-40 T 29-03-2018 AM354_RS02895 e70cb8d9cef37184edb91d2fe7595ce0 190 Gene3D G3DSA:3.30.70.20 151 181 4.3E-5 T 29-03-2018 AM354_RS02895 e70cb8d9cef37184edb91d2fe7595ce0 190 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 115 126 - T 29-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM354_RS02895 e70cb8d9cef37184edb91d2fe7595ce0 190 PIRSF PIRSF005784 3 189 2.6E-85 T 29-03-2018 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria GO:0005886|GO:0022900|GO:0051536 AM354_RS02895 e70cb8d9cef37184edb91d2fe7595ce0 190 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 145 156 - T 29-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM354_RS02895 e70cb8d9cef37184edb91d2fe7595ce0 190 Gene3D G3DSA:3.30.70.20 124 150 2.1E-11 T 29-03-2018 AM354_RS02895 e70cb8d9cef37184edb91d2fe7595ce0 190 Hamap MF_00463 Electron transport complex subunit RsxB [rsxB]. 4 183 43.621 T 29-03-2018 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria GO:0005886|GO:0022900|GO:0051536 AM354_RS02895 e70cb8d9cef37184edb91d2fe7595ce0 190 Gene3D G3DSA:3.30.70.20 23 123 3.2E-12 T 29-03-2018 AM354_RS02895 e70cb8d9cef37184edb91d2fe7595ce0 190 SUPERFAMILY SSF54862 39 174 2.93E-29 T 29-03-2018 AM354_RS02895 e70cb8d9cef37184edb91d2fe7595ce0 190 Pfam PF14697 4Fe-4S dicluster domain 108 162 3.2E-17 T 29-03-2018 AM354_RS02895 e70cb8d9cef37184edb91d2fe7595ce0 190 Pfam PF04060 Putative Fe-S cluster 44 75 3.8E-13 T 29-03-2018 IPR007202 4Fe-4S domain GO:0051536 AM354_RS02895 e70cb8d9cef37184edb91d2fe7595ce0 190 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 2 189 2.8E-88 T 29-03-2018 IPR010207 Electron transport complex, RnfB/RsxB GO:0009055|GO:0051536 AM354_RS19985 8b0da69f478d17e42ed1caf5308d10a4 748 SUPERFAMILY SSF55781 2 159 2.84E-31 T 29-03-2018 IPR029016 GAF domain-like AM354_RS19985 8b0da69f478d17e42ed1caf5308d10a4 748 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 419 707 1.3E-101 T 29-03-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 AM354_RS19985 8b0da69f478d17e42ed1caf5308d10a4 748 Gene3D G3DSA:1.10.274.10 196 303 4.0E-29 T 29-03-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AM354_RS19985 8b0da69f478d17e42ed1caf5308d10a4 748 SUPERFAMILY SSF52009 293 413 4.97E-24 T 29-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AM354_RS19985 8b0da69f478d17e42ed1caf5308d10a4 748 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 351 362 - T 29-03-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 AM354_RS19985 8b0da69f478d17e42ed1caf5308d10a4 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 666 678 1.3E-24 T 29-03-2018 AM354_RS19985 8b0da69f478d17e42ed1caf5308d10a4 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 630 645 1.3E-24 T 29-03-2018 AM354_RS19985 8b0da69f478d17e42ed1caf5308d10a4 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 613 628 1.3E-24 T 29-03-2018 AM354_RS19985 8b0da69f478d17e42ed1caf5308d10a4 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 459 478 1.3E-24 T 29-03-2018 AM354_RS19985 8b0da69f478d17e42ed1caf5308d10a4 748 SUPERFAMILY SSF47831 198 309 1.18E-25 T 29-03-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AM354_RS19985 8b0da69f478d17e42ed1caf5308d10a4 748 Pfam PF01590 GAF domain 18 151 6.5E-15 T 29-03-2018 IPR003018 GAF domain GO:0005515 AM354_RS19985 8b0da69f478d17e42ed1caf5308d10a4 748 SUPERFAMILY SSF51621 420 715 1.15E-95 T 29-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AM354_RS19985 8b0da69f478d17e42ed1caf5308d10a4 748 Pfam PF05524 PEP-utilising enzyme, N-terminal 174 294 5.0E-24 T 29-03-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AM354_RS19985 8b0da69f478d17e42ed1caf5308d10a4 748 Pfam PF00391 PEP-utilising enzyme, mobile domain 321 391 2.0E-14 T 29-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AM354_RS19985 8b0da69f478d17e42ed1caf5308d10a4 748 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 613 631 - T 29-03-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 AM354_RS19985 8b0da69f478d17e42ed1caf5308d10a4 748 Gene3D G3DSA:3.20.20.60 419 739 8.1E-86 T 29-03-2018 AM354_RS19985 8b0da69f478d17e42ed1caf5308d10a4 748 Gene3D G3DSA:3.30.450.40 1 175 5.3E-30 T 29-03-2018 IPR029016 GAF domain-like AM354_RS19985 8b0da69f478d17e42ed1caf5308d10a4 748 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 175 731 5.2E-128 T 29-03-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 AM354_RS19985 8b0da69f478d17e42ed1caf5308d10a4 748 SMART SM00065 17 164 5.4E-26 T 29-03-2018 IPR003018 GAF domain GO:0005515 AM354_RS19985 8b0da69f478d17e42ed1caf5308d10a4 748 Gene3D G3DSA:3.50.30.10 304 418 4.3E-18 T 29-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AM354_RS05880 0f58d7039efe1f41862b2966af62293d 242 SMART SM00382 27 218 3.8E-13 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS05880 0f58d7039efe1f41862b2966af62293d 242 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS05880 0f58d7039efe1f41862b2966af62293d 242 Pfam PF00005 ABC transporter 20 170 8.1E-36 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS05880 0f58d7039efe1f41862b2966af62293d 242 Gene3D G3DSA:3.40.50.300 1 242 5.7E-66 T 29-03-2018 AM354_RS05880 0f58d7039efe1f41862b2966af62293d 242 SUPERFAMILY SSF52540 3 236 4.31E-69 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS05880 0f58d7039efe1f41862b2966af62293d 242 PIRSF PIRSF039085 1 242 6.8E-85 T 29-03-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AM354_RS24695 f26a079b9a54d00c9a766108342bdb2d 165 SUPERFAMILY SSF117916 12 104 1.11E-23 T 29-03-2018 IPR034904 Fe-S cluster assembly domain AM354_RS24695 f26a079b9a54d00c9a766108342bdb2d 165 Pfam PF01883 Iron-sulfur cluster assembly protein 13 74 3.8E-11 T 29-03-2018 IPR002744 MIP18 family-like AM354_RS24695 f26a079b9a54d00c9a766108342bdb2d 165 TIGRFAM TIGR02159 PA_CoA_Oxy4: phenylacetate-CoA oxygenase, PaaJ subunit 21 165 4.0E-63 T 29-03-2018 IPR011883 Phenylacetate-CoA oxygenase, PaaJ subunit AM354_RS24695 f26a079b9a54d00c9a766108342bdb2d 165 Gene3D G3DSA:3.30.300.130 11 105 2.8E-21 T 29-03-2018 IPR034904 Fe-S cluster assembly domain AM354_RS14635 7c75bb390bdddd3635f7db587de60042 257 Gene3D G3DSA:3.40.1160.10 2 257 5.8E-46 T 29-03-2018 AM354_RS14635 7c75bb390bdddd3635f7db587de60042 257 SUPERFAMILY SSF53633 2 255 1.7E-59 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase AM354_RS14635 7c75bb390bdddd3635f7db587de60042 257 PIRSF PIRSF000728 1 257 3.0E-70 T 29-03-2018 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AM354_RS14635 7c75bb390bdddd3635f7db587de60042 257 TIGRFAM TIGR00761 argB: acetylglutamate kinase 4 233 2.3E-74 T 29-03-2018 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AM354_RS14635 7c75bb390bdddd3635f7db587de60042 257 Pfam PF00696 Amino acid kinase family 4 234 1.5E-39 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase AM354_RS14635 7c75bb390bdddd3635f7db587de60042 257 Hamap MF_00082_B Acetylglutamate kinase [argB]. 1 257 25.609 T 29-03-2018 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AM354_RS07785 5dfc235b424ca1e81bdb57ce622317b6 257 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 33 252 7.0E-80 T 29-03-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689|GO:0030288 AM354_RS07785 5dfc235b424ca1e81bdb57ce622317b6 257 SUPERFAMILY SSF53850 26 255 4.92E-71 T 29-03-2018 AM354_RS07785 5dfc235b424ca1e81bdb57ce622317b6 257 PIRSF PIRSF004846 1 257 1.1E-80 T 29-03-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689|GO:0030288 AM354_RS07785 5dfc235b424ca1e81bdb57ce622317b6 257 Pfam PF13531 Bacterial extracellular solute-binding protein 28 253 3.0E-50 T 29-03-2018 AM354_RS07785 5dfc235b424ca1e81bdb57ce622317b6 257 Gene3D G3DSA:3.40.190.10 121 217 5.7E-35 T 29-03-2018 AM354_RS07785 5dfc235b424ca1e81bdb57ce622317b6 257 Gene3D G3DSA:3.40.190.10 25 120 1.3E-16 T 29-03-2018 AM354_RS25990 f7f1dd32015db9c69d08995b03517a3d 192 SUPERFAMILY SSF55811 15 183 6.23E-31 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 AM354_RS25990 f7f1dd32015db9c69d08995b03517a3d 192 Gene3D G3DSA:3.90.79.10 5 191 1.3E-40 T 29-03-2018 AM354_RS25990 f7f1dd32015db9c69d08995b03517a3d 192 ProSitePatterns PS01293 Nudix CoA signature. 49 69 - T 29-03-2018 IPR000059 NUDIX hydrolase, NudL, conserved site GO:0000287|GO:0009132|GO:0016818|GO:0030145 Reactome: R-HSA-390918 AM354_RS25990 f7f1dd32015db9c69d08995b03517a3d 192 Pfam PF00293 NUDIX domain 32 145 8.6E-13 T 29-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AM354_RS07270 585f32e17ab0ce7166ede310827c638f 301 SUPERFAMILY SSF55729 137 296 5.83E-29 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS07270 585f32e17ab0ce7166ede310827c638f 301 Pfam PF12802 MarR family 21 76 3.6E-11 T 29-03-2018 AM354_RS07270 585f32e17ab0ce7166ede310827c638f 301 SMART SM00347 14 113 1.5E-9 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM354_RS07270 585f32e17ab0ce7166ede310827c638f 301 Gene3D G3DSA:1.10.10.10 1 130 7.6E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS07270 585f32e17ab0ce7166ede310827c638f 301 Pfam PF00583 Acetyltransferase (GNAT) family 174 273 2.0E-13 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS07270 585f32e17ab0ce7166ede310827c638f 301 SUPERFAMILY SSF46785 9 127 1.51E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS07270 585f32e17ab0ce7166ede310827c638f 301 Gene3D G3DSA:3.40.630.30 131 301 9.9E-30 T 29-03-2018 AM354_RS25635 f95d628d2858a2a420ee09d6f15619a7 503 Pfam PF11924 Inverse autotransporter, beta-domain 82 360 1.8E-92 T 29-03-2018 IPR024519 Inverse autotransporter, beta-domain AM354_RS09825 0064c61dec6f2e4a20f187c213f55f32 198 TIGRFAM TIGR01940 nqrE: NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit 2 197 3.8E-106 T 29-03-2018 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E GO:0009276|GO:0016021|GO:0016655|GO:0022904|GO:0055114 AM354_RS09825 0064c61dec6f2e4a20f187c213f55f32 198 PIRSF PIRSF006102 1 198 3.4E-65 T 29-03-2018 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 AM354_RS09825 0064c61dec6f2e4a20f187c213f55f32 198 Hamap MF_00429 Na(+)-translocating NADH-quinone reductase subunit E [nqrE]. 1 198 30.047 T 29-03-2018 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E GO:0009276|GO:0016021|GO:0016655|GO:0022904|GO:0055114 AM354_RS09825 0064c61dec6f2e4a20f187c213f55f32 198 Pfam PF02508 Rnf-Nqr subunit, membrane protein 4 196 1.7E-59 T 29-03-2018 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 AM354_RS15395 fa75fd9627e715409032fe7447b97f16 231 Gene3D G3DSA:2.60.120.10 12 131 2.7E-48 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS15395 fa75fd9627e715409032fe7447b97f16 231 SUPERFAMILY SSF51182 1 230 4.7E-80 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS15395 fa75fd9627e715409032fe7447b97f16 231 Pfam PF02678 Pirin 8 119 7.0E-38 T 29-03-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 AM354_RS15395 fa75fd9627e715409032fe7447b97f16 231 Gene3D G3DSA:2.60.120.10 132 231 5.9E-24 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS15395 fa75fd9627e715409032fe7447b97f16 231 PIRSF PIRSF006232 1 230 5.1E-57 T 29-03-2018 IPR012093 Pirin Reactome: R-HSA-8935690 AM354_RS01945 bbe74323d58ade1f27f566da068ecf9e 156 SMART SM00422 1 70 5.0E-29 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS01945 bbe74323d58ade1f27f566da068ecf9e 156 Pfam PF09278 MerR, DNA binding 45 108 5.1E-18 T 29-03-2018 IPR015358 Transcription regulator MerR, DNA binding AM354_RS01945 bbe74323d58ade1f27f566da068ecf9e 156 Gene3D G3DSA:1.10.1660.10 1 55 8.8E-21 T 29-03-2018 AM354_RS01945 bbe74323d58ade1f27f566da068ecf9e 156 ProSitePatterns PS00552 MerR-type HTH domain signature. 4 26 - T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS01945 bbe74323d58ade1f27f566da068ecf9e 156 Pfam PF00376 MerR family regulatory protein 2 39 2.1E-17 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS01945 bbe74323d58ade1f27f566da068ecf9e 156 SUPERFAMILY SSF46955 1 126 3.66E-38 T 29-03-2018 IPR009061 Putative DNA-binding domain AM354_RS01945 bbe74323d58ade1f27f566da068ecf9e 156 Gene3D G3DSA:1.10.1660.10 56 132 4.0E-20 T 29-03-2018 AM354_RS01945 bbe74323d58ade1f27f566da068ecf9e 156 TIGRFAM TIGR02044 CueR: Cu(I)-responsive transcriptional regulator 1 126 2.1E-53 T 29-03-2018 IPR011789 Cu(I)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0005507|GO:0045893 AM354_RS01945 bbe74323d58ade1f27f566da068ecf9e 156 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 4.6E-10 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS01945 bbe74323d58ade1f27f566da068ecf9e 156 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 4.6E-10 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS01945 bbe74323d58ade1f27f566da068ecf9e 156 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 4.6E-10 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS11115 6b4f4d16ae99c9b36af38b30e1953924 346 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 265 271 - T 29-03-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AM354_RS11115 6b4f4d16ae99c9b36af38b30e1953924 346 Pfam PF08468 Methyltransferase small domain N-terminal 8 162 1.2E-53 T 29-03-2018 IPR013675 Methyltransferase small, N-terminal GO:0006364|GO:0008990 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM354_RS11115 6b4f4d16ae99c9b36af38b30e1953924 346 Hamap MF_01862 Ribosomal RNA small subunit methyltransferase C [rsmC]. 4 336 45.573 T 29-03-2018 IPR023543 rRNA small subunit methyltransferase C GO:0008649 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM354_RS11115 6b4f4d16ae99c9b36af38b30e1953924 346 SUPERFAMILY SSF53335 153 315 1.28E-28 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS11115 6b4f4d16ae99c9b36af38b30e1953924 346 Gene3D G3DSA:3.40.50.150 159 339 6.3E-30 T 29-03-2018 AM354_RS11115 6b4f4d16ae99c9b36af38b30e1953924 346 Pfam PF05175 Methyltransferase small domain 167 333 7.6E-60 T 29-03-2018 IPR007848 Methyltransferase small domain GO:0008168 AM354_RS10400 5b368b196d879f1e5f0a76a1e22046d3 264 SUPERFAMILY SSF101386 139 240 5.42E-24 T 29-03-2018 AM354_RS10400 5b368b196d879f1e5f0a76a1e22046d3 264 TIGRFAM TIGR00444 mazG: MazG family protein 13 260 9.6E-111 T 29-03-2018 IPR011551 NTP pyrophosphohydrolase MazG AM354_RS10400 5b368b196d879f1e5f0a76a1e22046d3 264 SUPERFAMILY SSF101386 6 108 2.8E-25 T 29-03-2018 AM354_RS10400 5b368b196d879f1e5f0a76a1e22046d3 264 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 171 232 3.4E-8 T 29-03-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core AM354_RS10400 5b368b196d879f1e5f0a76a1e22046d3 264 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 30 103 8.1E-27 T 29-03-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core AM354_RS10400 5b368b196d879f1e5f0a76a1e22046d3 264 Gene3D G3DSA:1.10.287.1080 6 125 2.2E-41 T 29-03-2018 AM354_RS10400 5b368b196d879f1e5f0a76a1e22046d3 264 Gene3D G3DSA:1.10.287.1080 140 264 1.6E-26 T 29-03-2018 AM354_RS01925 759ba80164a06a39e7398ee1667618c3 1045 SUPERFAMILY SSF82693 38 131 1.57E-27 T 29-03-2018 AM354_RS01925 759ba80164a06a39e7398ee1667618c3 1045 Gene3D G3DSA:3.30.2090.10 180 273 6.1E-21 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS01925 759ba80164a06a39e7398ee1667618c3 1045 Pfam PF00873 AcrB/AcrD/AcrF family 1 1029 0.0 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS01925 759ba80164a06a39e7398ee1667618c3 1045 Gene3D G3DSA:3.30.70.1430 38 140 2.6E-30 T 29-03-2018 AM354_RS01925 759ba80164a06a39e7398ee1667618c3 1045 SUPERFAMILY SSF82693 671 720 3.4E-20 T 29-03-2018 AM354_RS01925 759ba80164a06a39e7398ee1667618c3 1045 SUPERFAMILY SSF82693 811 859 3.4E-20 T 29-03-2018 AM354_RS01925 759ba80164a06a39e7398ee1667618c3 1045 Gene3D G3DSA:1.20.1640.10 825 1032 2.6E-32 T 29-03-2018 AM354_RS01925 759ba80164a06a39e7398ee1667618c3 1045 Gene3D G3DSA:1.20.1640.10 274 499 5.5E-46 T 29-03-2018 AM354_RS01925 759ba80164a06a39e7398ee1667618c3 1045 SUPERFAMILY SSF82866 843 1029 1.7E-39 T 29-03-2018 AM354_RS01925 759ba80164a06a39e7398ee1667618c3 1045 SUPERFAMILY SSF82866 296 497 2.09E-49 T 29-03-2018 AM354_RS01925 759ba80164a06a39e7398ee1667618c3 1045 Gene3D G3DSA:3.30.70.1430 566 667 1.7E-20 T 29-03-2018 AM354_RS01925 759ba80164a06a39e7398ee1667618c3 1045 SUPERFAMILY SSF82693 135 182 9.42E-25 T 29-03-2018 AM354_RS01925 759ba80164a06a39e7398ee1667618c3 1045 SUPERFAMILY SSF82693 274 330 9.42E-25 T 29-03-2018 AM354_RS01925 759ba80164a06a39e7398ee1667618c3 1045 Gene3D G3DSA:3.30.70.1440 671 767 5.9E-15 T 29-03-2018 AM354_RS01925 759ba80164a06a39e7398ee1667618c3 1045 SUPERFAMILY SSF82714 721 810 4.84E-18 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS01925 759ba80164a06a39e7398ee1667618c3 1045 SUPERFAMILY SSF82714 182 272 4.05E-22 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS01925 759ba80164a06a39e7398ee1667618c3 1045 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1039 0.0 T 29-03-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 AM354_RS01925 759ba80164a06a39e7398ee1667618c3 1045 SUPERFAMILY SSF82693 564 670 2.67E-30 T 29-03-2018 AM354_RS01925 759ba80164a06a39e7398ee1667618c3 1045 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 4.2E-108 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS01925 759ba80164a06a39e7398ee1667618c3 1045 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 4.2E-108 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS01925 759ba80164a06a39e7398ee1667618c3 1045 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 4.2E-108 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS01925 759ba80164a06a39e7398ee1667618c3 1045 PRINTS PR00702 Acriflavin resistance protein family signature 620 634 4.2E-108 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS01925 759ba80164a06a39e7398ee1667618c3 1045 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 4.2E-108 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS01925 759ba80164a06a39e7398ee1667618c3 1045 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 4.2E-108 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS01925 759ba80164a06a39e7398ee1667618c3 1045 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 4.2E-108 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS01925 759ba80164a06a39e7398ee1667618c3 1045 PRINTS PR00702 Acriflavin resistance protein family signature 551 568 4.2E-108 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS01925 759ba80164a06a39e7398ee1667618c3 1045 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 4.2E-108 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS12640 80e91918c9868648bd48e55c6b928e7d 427 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 102 1.2E-35 T 29-03-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AM354_RS12640 80e91918c9868648bd48e55c6b928e7d 427 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 103 296 2.0E-83 T 29-03-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AM354_RS12640 80e91918c9868648bd48e55c6b928e7d 427 Gene3D G3DSA:3.90.600.10 330 424 1.1E-35 T 29-03-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AM354_RS12640 80e91918c9868648bd48e55c6b928e7d 427 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 290 297 - T 29-03-2018 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AM354_RS12640 80e91918c9868648bd48e55c6b928e7d 427 SMART SM01210 330 423 3.7E-56 T 29-03-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AM354_RS12640 80e91918c9868648bd48e55c6b928e7d 427 SMART SM01209 103 296 2.0E-140 T 29-03-2018 AM354_RS12640 80e91918c9868648bd48e55c6b928e7d 427 SUPERFAMILY SSF51246 329 424 9.42E-33 T 29-03-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AM354_RS12640 80e91918c9868648bd48e55c6b928e7d 427 Gene3D G3DSA:3.30.1490.20 87 189 1.7E-22 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AM354_RS12640 80e91918c9868648bd48e55c6b928e7d 427 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 423 1.2E-184 T 29-03-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AM354_RS12640 80e91918c9868648bd48e55c6b928e7d 427 Gene3D G3DSA:3.30.470.20 191 329 2.7E-61 T 29-03-2018 AM354_RS12640 80e91918c9868648bd48e55c6b928e7d 427 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 423 43.885 T 29-03-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AM354_RS12640 80e91918c9868648bd48e55c6b928e7d 427 Gene3D G3DSA:3.40.50.20 2 86 7.1E-38 T 29-03-2018 AM354_RS12640 80e91918c9868648bd48e55c6b928e7d 427 SUPERFAMILY SSF52440 1 103 6.19E-37 T 29-03-2018 IPR016185 Pre-ATP-grasp domain AM354_RS12640 80e91918c9868648bd48e55c6b928e7d 427 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 331 421 1.2E-29 T 29-03-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AM354_RS12640 80e91918c9868648bd48e55c6b928e7d 427 SUPERFAMILY SSF56059 104 322 7.42E-69 T 29-03-2018 AM354_RS08755 4ad92115baa05fdefe953c40adc507f0 550 SUPERFAMILY SSF56300 27 360 6.48E-97 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like AM354_RS08755 4ad92115baa05fdefe953c40adc507f0 550 Gene3D G3DSA:3.90.780.10 363 549 5.3E-47 T 29-03-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM354_RS08755 4ad92115baa05fdefe953c40adc507f0 550 SUPERFAMILY SSF55816 363 542 6.93E-53 T 29-03-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM354_RS08755 4ad92115baa05fdefe953c40adc507f0 550 Gene3D G3DSA:3.60.21.10 26 362 1.0E-84 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like AM354_RS08755 4ad92115baa05fdefe953c40adc507f0 550 ProSitePatterns PS00785 5'-nucleotidase signature 1. 34 46 - T 29-03-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM354_RS08755 4ad92115baa05fdefe953c40adc507f0 550 Pfam PF00149 Calcineurin-like phosphoesterase 35 254 3.2E-17 T 29-03-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AM354_RS08755 4ad92115baa05fdefe953c40adc507f0 550 PRINTS PR01607 Apyrase family signature 207 224 1.2E-59 T 29-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM354_RS08755 4ad92115baa05fdefe953c40adc507f0 550 PRINTS PR01607 Apyrase family signature 238 261 1.2E-59 T 29-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM354_RS08755 4ad92115baa05fdefe953c40adc507f0 550 PRINTS PR01607 Apyrase family signature 417 440 1.2E-59 T 29-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM354_RS08755 4ad92115baa05fdefe953c40adc507f0 550 PRINTS PR01607 Apyrase family signature 283 303 1.2E-59 T 29-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM354_RS08755 4ad92115baa05fdefe953c40adc507f0 550 PRINTS PR01607 Apyrase family signature 484 503 1.2E-59 T 29-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM354_RS08755 4ad92115baa05fdefe953c40adc507f0 550 PRINTS PR01607 Apyrase family signature 32 50 1.2E-59 T 29-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM354_RS08755 4ad92115baa05fdefe953c40adc507f0 550 ProSitePatterns PS00786 5'-nucleotidase signature 2. 109 120 - T 29-03-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM354_RS08755 4ad92115baa05fdefe953c40adc507f0 550 Pfam PF02872 5'-nucleotidase, C-terminal domain 363 509 1.1E-33 T 29-03-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM354_RS13605 22e70d26161307ae47d70c327fce8e0d 330 Hamap MF_01949 O-acetyltransferase WecH [wecH]. 1 330 37.754 T 29-03-2018 IPR032905 O-acetyltransferase WecH GO:0009246|GO:0016413 AM354_RS13605 22e70d26161307ae47d70c327fce8e0d 330 Pfam PF01757 Acyltransferase family 6 318 7.2E-29 T 29-03-2018 IPR002656 Acyltransferase 3 GO:0016747 AM354_RS09110 5270022e4dcf1c479528f8c62b947ab8 316 SUPERFAMILY SSF81464 18 116 4.91E-24 T 29-03-2018 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM354_RS09110 5270022e4dcf1c479528f8c62b947ab8 316 TIGRFAM TIGR01433 CyoA: ubiquinol oxidase, subunit II 13 239 1.6E-115 T 29-03-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 AM354_RS09110 5270022e4dcf1c479528f8c62b947ab8 316 SUPERFAMILY SSF49503 122 281 2.07E-51 T 29-03-2018 IPR008972 Cupredoxin AM354_RS09110 5270022e4dcf1c479528f8c62b947ab8 316 Gene3D G3DSA:1.10.287.90 28 113 1.3E-18 T 29-03-2018 AM354_RS09110 5270022e4dcf1c479528f8c62b947ab8 316 Pfam PF06481 COX Aromatic Rich Motif 239 285 5.1E-20 T 29-03-2018 IPR010514 COX aromatic rich motif GO:0008827|GO:0016021|GO:0022900|GO:0055114 AM354_RS09110 5270022e4dcf1c479528f8c62b947ab8 316 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 149 219 4.6E-5 T 29-03-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM354_RS09110 5270022e4dcf1c479528f8c62b947ab8 316 PIRSF PIRSF000292 1 312 1.3E-133 T 29-03-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 AM354_RS09110 5270022e4dcf1c479528f8c62b947ab8 316 Gene3D G3DSA:2.60.40.420 114 281 5.4E-52 T 29-03-2018 IPR008972 Cupredoxin AM354_RS11730 1fc018dae8dda47241d69f6f33d71267 311 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 8 305 3.8E-121 T 29-03-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AM354_RS11730 1fc018dae8dda47241d69f6f33d71267 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 39 61 3.6E-36 T 29-03-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AM354_RS11730 1fc018dae8dda47241d69f6f33d71267 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 79 88 3.6E-36 T 29-03-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AM354_RS11730 1fc018dae8dda47241d69f6f33d71267 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 226 235 3.6E-36 T 29-03-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AM354_RS11730 1fc018dae8dda47241d69f6f33d71267 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 134 151 3.6E-36 T 29-03-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AM354_RS11730 1fc018dae8dda47241d69f6f33d71267 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 286 300 3.6E-36 T 29-03-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AM354_RS11730 1fc018dae8dda47241d69f6f33d71267 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 264 269 3.6E-36 T 29-03-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AM354_RS11730 1fc018dae8dda47241d69f6f33d71267 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 260 269 4.4E-25 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AM354_RS11730 1fc018dae8dda47241d69f6f33d71267 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 270 293 4.4E-25 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AM354_RS11730 1fc018dae8dda47241d69f6f33d71267 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 49 68 4.4E-25 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AM354_RS11730 1fc018dae8dda47241d69f6f33d71267 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 135 146 4.4E-25 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AM354_RS11730 1fc018dae8dda47241d69f6f33d71267 311 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 7 307 38.279 T 29-03-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AM354_RS11730 1fc018dae8dda47241d69f6f33d71267 311 Gene3D G3DSA:3.40.50.1370 1 146 2.9E-52 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AM354_RS11730 1fc018dae8dda47241d69f6f33d71267 311 Gene3D G3DSA:3.40.50.1370 147 292 3.0E-47 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AM354_RS11730 1fc018dae8dda47241d69f6f33d71267 311 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 8 148 3.9E-47 T 29-03-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 AM354_RS11730 1fc018dae8dda47241d69f6f33d71267 311 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 49 56 - T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AM354_RS11730 1fc018dae8dda47241d69f6f33d71267 311 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 155 303 1.2E-27 T 29-03-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 AM354_RS11730 1fc018dae8dda47241d69f6f33d71267 311 SUPERFAMILY SSF53671 4 306 7.98E-100 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AM354_RS08655 06240f8c4289e7e4abfe2616f36c0b3d 259 TIGRFAM TIGR03234 OH-pyruv-isom: hydroxypyruvate isomerase 2 255 6.8E-117 T 29-03-2018 IPR017643 Hydroxypyruvate isomerase KEGG: 00630+5.3.1.22 AM354_RS08655 06240f8c4289e7e4abfe2616f36c0b3d 259 PIRSF PIRSF006241 1 259 2.6E-97 T 29-03-2018 IPR026040 Hydroxypyruvate isomerase-like KEGG: 00630+5.3.1.22 AM354_RS08655 06240f8c4289e7e4abfe2616f36c0b3d 259 Pfam PF01261 Xylose isomerase-like TIM barrel 21 219 3.0E-36 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM354_RS08655 06240f8c4289e7e4abfe2616f36c0b3d 259 Gene3D G3DSA:3.20.20.150 1 259 9.1E-61 T 29-03-2018 AM354_RS08655 06240f8c4289e7e4abfe2616f36c0b3d 259 SUPERFAMILY SSF51658 1 258 2.75E-86 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM354_RS07420 36779e3a0a2fb2d6884b22dddd0dfc7b 765 SMART SM01217 685 754 1.3E-29 T 29-03-2018 IPR026891 Fibronectin type III-like domain AM354_RS07420 36779e3a0a2fb2d6884b22dddd0dfc7b 765 Pfam PF14310 Fibronectin type III-like domain 686 754 2.5E-21 T 29-03-2018 IPR026891 Fibronectin type III-like domain AM354_RS07420 36779e3a0a2fb2d6884b22dddd0dfc7b 765 PRINTS PR00133 Glycosyl hydrolase family 3 signature 120 139 2.3E-19 T 29-03-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AM354_RS07420 36779e3a0a2fb2d6884b22dddd0dfc7b 765 PRINTS PR00133 Glycosyl hydrolase family 3 signature 273 291 2.3E-19 T 29-03-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AM354_RS07420 36779e3a0a2fb2d6884b22dddd0dfc7b 765 PRINTS PR00133 Glycosyl hydrolase family 3 signature 203 219 2.3E-19 T 29-03-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AM354_RS07420 36779e3a0a2fb2d6884b22dddd0dfc7b 765 PRINTS PR00133 Glycosyl hydrolase family 3 signature 166 182 2.3E-19 T 29-03-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AM354_RS07420 36779e3a0a2fb2d6884b22dddd0dfc7b 765 PRINTS PR00133 Glycosyl hydrolase family 3 signature 101 117 2.3E-19 T 29-03-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AM354_RS07420 36779e3a0a2fb2d6884b22dddd0dfc7b 765 Gene3D G3DSA:2.60.40.10 649 765 9.9E-34 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS07420 36779e3a0a2fb2d6884b22dddd0dfc7b 765 Gene3D G3DSA:3.40.50.1700 380 648 5.3E-87 T 29-03-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AM354_RS07420 36779e3a0a2fb2d6884b22dddd0dfc7b 765 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 395 648 1.5E-63 T 29-03-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AM354_RS07420 36779e3a0a2fb2d6884b22dddd0dfc7b 765 SUPERFAMILY SSF51445 34 388 2.32E-98 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily AM354_RS07420 36779e3a0a2fb2d6884b22dddd0dfc7b 765 SUPERFAMILY SSF52279 395 464 8.24E-62 T 29-03-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AM354_RS07420 36779e3a0a2fb2d6884b22dddd0dfc7b 765 SUPERFAMILY SSF52279 495 651 8.24E-62 T 29-03-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AM354_RS07420 36779e3a0a2fb2d6884b22dddd0dfc7b 765 Gene3D G3DSA:3.20.20.300 32 374 1.1E-102 T 29-03-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AM354_RS07420 36779e3a0a2fb2d6884b22dddd0dfc7b 765 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 46 351 4.5E-88 T 29-03-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AM354_RS07420 36779e3a0a2fb2d6884b22dddd0dfc7b 765 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 273 290 - T 29-03-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 AM354_RS17180 4a9572c3c73beca36dae082338e96f7b 324 Pfam PF03741 Integral membrane protein TerC family 81 283 5.6E-56 T 29-03-2018 IPR005496 Integral membrane protein TerC GO:0016021 AM354_RS17180 4a9572c3c73beca36dae082338e96f7b 324 TIGRFAM TIGR03718 R_switched_Alx: integral membrane protein, TerC family 8 314 6.7E-122 T 29-03-2018 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 AM354_RS02110 fc05b18086b9da09f6f8e1a3db3688f6 265 Pfam PF00005 ABC transporter 27 169 1.4E-34 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS02110 fc05b18086b9da09f6f8e1a3db3688f6 265 Gene3D G3DSA:3.40.50.300 3 243 2.1E-58 T 29-03-2018 AM354_RS02110 fc05b18086b9da09f6f8e1a3db3688f6 265 SMART SM00382 36 219 1.3E-18 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS02110 fc05b18086b9da09f6f8e1a3db3688f6 265 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS02110 fc05b18086b9da09f6f8e1a3db3688f6 265 TIGRFAM TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D 27 257 7.8E-99 T 29-03-2018 IPR005890 Nitrate transport ATP-binding subunit C/D GO:0015112|GO:0015706|GO:0016020 AM354_RS02110 fc05b18086b9da09f6f8e1a3db3688f6 265 SUPERFAMILY SSF52540 7 236 3.77E-69 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS00215 e99405b6975767f4c369eb2d835a0e20 216 Pfam PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment 37 216 7.3E-83 T 29-03-2018 IPR015304 ZinT domain GO:0008270 AM354_RS00215 e99405b6975767f4c369eb2d835a0e20 216 SUPERFAMILY SSF50814 31 216 1.08E-75 T 29-03-2018 IPR012674 Calycin AM354_RS00215 e99405b6975767f4c369eb2d835a0e20 216 Gene3D G3DSA:2.40.128.20 29 216 2.4E-67 T 29-03-2018 IPR012674 Calycin AM354_RS15705 223a54596d7bfdc0ef12acb32959857c 173 PRINTS PR01100 Shikimate kinase family signature 59 67 4.3E-29 T 29-03-2018 AM354_RS15705 223a54596d7bfdc0ef12acb32959857c 173 PRINTS PR01100 Shikimate kinase family signature 31 44 4.3E-29 T 29-03-2018 AM354_RS15705 223a54596d7bfdc0ef12acb32959857c 173 PRINTS PR01100 Shikimate kinase family signature 98 115 4.3E-29 T 29-03-2018 AM354_RS15705 223a54596d7bfdc0ef12acb32959857c 173 PRINTS PR01100 Shikimate kinase family signature 7 22 4.3E-29 T 29-03-2018 AM354_RS15705 223a54596d7bfdc0ef12acb32959857c 173 PRINTS PR01100 Shikimate kinase family signature 77 86 4.3E-29 T 29-03-2018 AM354_RS15705 223a54596d7bfdc0ef12acb32959857c 173 Pfam PF01202 Shikimate kinase 13 170 7.5E-57 T 29-03-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 AM354_RS15705 223a54596d7bfdc0ef12acb32959857c 173 Gene3D G3DSA:3.40.50.300 1 173 9.8E-37 T 29-03-2018 AM354_RS15705 223a54596d7bfdc0ef12acb32959857c 173 SUPERFAMILY SSF52540 4 170 7.83E-35 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS15705 223a54596d7bfdc0ef12acb32959857c 173 ProSitePatterns PS01128 Shikimate kinase signature. 60 85 - T 29-03-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 AM354_RS15705 223a54596d7bfdc0ef12acb32959857c 173 Hamap MF_00109 Shikimate kinase [aroK]. 4 171 29.478 T 29-03-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 AM354_RS06600 e02bec581f1fef56e018b7899ef05e01 357 Gene3D G3DSA:2.60.40.1090 42 182 0.056 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS06600 e02bec581f1fef56e018b7899ef05e01 357 SUPERFAMILY SSF49401 225 356 6.46E-13 T 29-03-2018 IPR008966 Adhesion domain AM354_RS06600 e02bec581f1fef56e018b7899ef05e01 357 Pfam PF00419 Fimbrial protein 200 357 6.0E-21 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS06600 e02bec581f1fef56e018b7899ef05e01 357 Gene3D G3DSA:2.60.40.1090 215 357 3.4E-13 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS24300 90342ebfea19e661de6673a797380b14 189 SUPERFAMILY SSF47413 8 75 1.69E-17 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS24300 90342ebfea19e661de6673a797380b14 189 Gene3D G3DSA:2.60.120.10 75 188 1.0E-14 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS24300 90342ebfea19e661de6673a797380b14 189 SMART SM00530 15 70 2.4E-15 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM354_RS24300 90342ebfea19e661de6673a797380b14 189 Gene3D G3DSA:1.10.260.40 5 74 2.4E-18 T 29-03-2018 AM354_RS24300 90342ebfea19e661de6673a797380b14 189 SUPERFAMILY SSF51182 54 185 1.36E-18 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS24300 90342ebfea19e661de6673a797380b14 189 Pfam PF01381 Helix-turn-helix 16 70 2.5E-13 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM354_RS08125 166f7d7adf3eeb377104be399bdb752a 189 PIRSF PIRSF001296 1 189 9.9E-76 T 29-03-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 AM354_RS08125 166f7d7adf3eeb377104be399bdb752a 189 Hamap MF_00276 Potassium-transporting ATPase KdpC subunit [kdpC]. 1 188 34.704 T 29-03-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 AM354_RS08125 166f7d7adf3eeb377104be399bdb752a 189 Pfam PF02669 K+-transporting ATPase, c chain 5 186 3.1E-71 T 29-03-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 AM354_RS08125 166f7d7adf3eeb377104be399bdb752a 189 TIGRFAM TIGR00681 kdpC: K+-transporting ATPase, C subunit 4 187 3.6E-76 T 29-03-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 AM354_RS06945 dc06d0015563c10c28615aeea28c9566 218 Gene3D G3DSA:1.20.1050.10 107 207 9.3E-15 T 29-03-2018 AM354_RS06945 dc06d0015563c10c28615aeea28c9566 218 SUPERFAMILY SSF47616 88 205 2.42E-15 T 29-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like AM354_RS06945 dc06d0015563c10c28615aeea28c9566 218 SUPERFAMILY SSF52833 4 87 3.43E-13 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS06945 dc06d0015563c10c28615aeea28c9566 218 Pfam PF14497 Glutathione S-transferase, C-terminal domain 129 207 6.3E-5 T 29-03-2018 IPR004046 Glutathione S-transferase, C-terminal AM354_RS06945 dc06d0015563c10c28615aeea28c9566 218 Gene3D G3DSA:3.40.30.10 2 106 6.9E-15 T 29-03-2018 AM354_RS06945 dc06d0015563c10c28615aeea28c9566 218 Pfam PF13417 Glutathione S-transferase, N-terminal domain 17 81 1.2E-8 T 29-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AM354_RS14185 ebb7b2269c9d3ade7c7746fb8ae97a65 457 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 8 457 3.3E-220 T 29-03-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 AM354_RS14185 ebb7b2269c9d3ade7c7746fb8ae97a65 457 Gene3D G3DSA:3.20.20.70 26 353 1.1E-44 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS14185 ebb7b2269c9d3ade7c7746fb8ae97a65 457 Pfam PF04055 Radical SAM superfamily 57 226 2.0E-16 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AM354_RS14185 ebb7b2269c9d3ade7c7746fb8ae97a65 457 Pfam PF06969 HemN C-terminal domain 363 431 1.9E-11 T 29-03-2018 IPR010723 HemN, C-terminal AM354_RS14185 ebb7b2269c9d3ade7c7746fb8ae97a65 457 PIRSF PIRSF000167 3 454 8.8E-174 T 29-03-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 AM354_RS14185 ebb7b2269c9d3ade7c7746fb8ae97a65 457 SUPERFAMILY SSF102114 6 444 7.06E-144 T 29-03-2018 AM354_RS14185 ebb7b2269c9d3ade7c7746fb8ae97a65 457 SMART SM00729 52 272 4.5E-54 T 29-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 AM354_RS05060 58a39306dedd1f3198efd86fc3636dbd 645 Pfam PF00005 ABC transporter 24 172 2.0E-29 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS05060 58a39306dedd1f3198efd86fc3636dbd 645 Gene3D G3DSA:1.20.1250.20 256 637 1.0E-4 T 29-03-2018 AM354_RS05060 58a39306dedd1f3198efd86fc3636dbd 645 Pfam PF02687 FtsX-like permease family 550 638 2.8E-11 T 29-03-2018 IPR003838 ABC transporter permease protein domain GO:0016020 AM354_RS05060 58a39306dedd1f3198efd86fc3636dbd 645 Pfam PF12704 MacB-like periplasmic core domain 271 487 3.1E-35 T 29-03-2018 IPR025857 MacB-like periplasmic core domain AM354_RS05060 58a39306dedd1f3198efd86fc3636dbd 645 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS05060 58a39306dedd1f3198efd86fc3636dbd 645 SMART SM00382 33 220 1.1E-12 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS05060 58a39306dedd1f3198efd86fc3636dbd 645 Gene3D G3DSA:3.40.50.300 1 255 4.1E-63 T 29-03-2018 AM354_RS05060 58a39306dedd1f3198efd86fc3636dbd 645 SUPERFAMILY SSF52540 4 227 2.6E-69 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS21045 496b4b6e5a1a43aa6f9a5e811d1e29d5 243 Pfam PF02565 Recombination protein O C terminal 85 226 2.1E-23 T 29-03-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 AM354_RS21045 496b4b6e5a1a43aa6f9a5e811d1e29d5 243 SUPERFAMILY SSF50249 5 75 9.25E-15 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS21045 496b4b6e5a1a43aa6f9a5e811d1e29d5 243 Hamap MF_00201 DNA repair protein RecO [recO]. 1 231 23.333 T 29-03-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 AM354_RS21045 496b4b6e5a1a43aa6f9a5e811d1e29d5 243 Pfam PF11967 Recombination protein O N terminal 5 76 7.3E-23 T 29-03-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal AM354_RS21045 496b4b6e5a1a43aa6f9a5e811d1e29d5 243 Gene3D G3DSA:2.40.50.140 2 76 6.0E-25 T 29-03-2018 AM354_RS21045 496b4b6e5a1a43aa6f9a5e811d1e29d5 243 SUPERFAMILY SSF57863 85 175 5.49E-10 T 29-03-2018 AM354_RS21045 496b4b6e5a1a43aa6f9a5e811d1e29d5 243 TIGRFAM TIGR00613 reco: DNA repair protein RecO 6 230 2.5E-37 T 29-03-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 AM354_RS05660 53ce40bd71648a0a7936ef58c5170e7f 756 Pfam PF00753 Metallo-beta-lactamase superfamily 508 688 8.1E-18 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS05660 53ce40bd71648a0a7936ef58c5170e7f 756 Gene3D G3DSA:3.60.15.10 497 714 7.1E-25 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS05660 53ce40bd71648a0a7936ef58c5170e7f 756 TIGRFAM TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 122 720 3.4E-181 T 29-03-2018 IPR004797 Competence protein ComEC/Rec2 GO:0016021|GO:0030420 AM354_RS05660 53ce40bd71648a0a7936ef58c5170e7f 756 SMART SM00849 510 691 4.1E-15 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS05660 53ce40bd71648a0a7936ef58c5170e7f 756 Pfam PF13567 Domain of unknown function (DUF4131) 23 172 2.4E-9 T 29-03-2018 IPR025405 Domain of unknown function DUF4131 AM354_RS05660 53ce40bd71648a0a7936ef58c5170e7f 756 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 226 409 2.2E-39 T 29-03-2018 IPR004477 ComEC/Rec2-related protein AM354_RS05660 53ce40bd71648a0a7936ef58c5170e7f 756 Pfam PF03772 Competence protein 205 474 3.9E-52 T 29-03-2018 IPR004477 ComEC/Rec2-related protein AM354_RS05660 53ce40bd71648a0a7936ef58c5170e7f 756 SUPERFAMILY SSF56281 500 744 9.43E-45 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS15960 12a7a28a6e233bd3e8499ddb5e6aa314 119 Hamap MF_00389 Protein TusC [tusC]. 1 119 37.004 T 29-03-2018 IPR017462 Sulphur relay, TusC/DsrF AM354_RS15960 12a7a28a6e233bd3e8499ddb5e6aa314 119 TIGRFAM TIGR03010 sulf_tusC_dsrF: sulfur relay protein TusC/DsrF 4 119 3.5E-46 T 29-03-2018 IPR017462 Sulphur relay, TusC/DsrF AM354_RS15960 12a7a28a6e233bd3e8499ddb5e6aa314 119 SUPERFAMILY SSF75169 1 119 2.09E-37 T 29-03-2018 IPR027396 DsrEFH-like AM354_RS15960 12a7a28a6e233bd3e8499ddb5e6aa314 119 Pfam PF02635 DsrE/DsrF-like family 2 119 1.4E-24 T 29-03-2018 IPR003787 Sulphur relay, DsrE/F-like protein AM354_RS15960 12a7a28a6e233bd3e8499ddb5e6aa314 119 Gene3D G3DSA:3.40.1260.10 1 119 1.2E-22 T 29-03-2018 AM354_RS23100 0a0da6ab2c9d7737a1f5d49a92ec94da 218 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 125 141 6.0E-10 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS23100 0a0da6ab2c9d7737a1f5d49a92ec94da 218 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 143 163 6.0E-10 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS23100 0a0da6ab2c9d7737a1f5d49a92ec94da 218 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 3 14 6.0E-10 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS23100 0a0da6ab2c9d7737a1f5d49a92ec94da 218 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 95 108 6.0E-10 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS23100 0a0da6ab2c9d7737a1f5d49a92ec94da 218 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 6 164 5.3E-6 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS23100 0a0da6ab2c9d7737a1f5d49a92ec94da 218 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 6 181 2.1E-19 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS23100 0a0da6ab2c9d7737a1f5d49a92ec94da 218 Gene3D G3DSA:1.10.150.240 31 75 1.1E-17 T 29-03-2018 IPR023198 Phosphoglycolate phosphatase, domain 2 AM354_RS23100 0a0da6ab2c9d7737a1f5d49a92ec94da 218 SUPERFAMILY SSF56784 4 203 3.36E-48 T 29-03-2018 IPR023214 HAD-like domain AM354_RS23100 0a0da6ab2c9d7737a1f5d49a92ec94da 218 Gene3D G3DSA:3.40.50.1000 76 205 1.6E-28 T 29-03-2018 IPR023214 HAD-like domain AM354_RS23100 0a0da6ab2c9d7737a1f5d49a92ec94da 218 Gene3D G3DSA:3.40.50.1000 1 30 0.064 T 29-03-2018 IPR023214 HAD-like domain AM354_RS23100 0a0da6ab2c9d7737a1f5d49a92ec94da 218 Pfam PF13419 Haloacid dehalogenase-like hydrolase 7 181 7.1E-27 T 29-03-2018 IPR023214 HAD-like domain AM354_RS22730 611f595269795688031ed4f8bb410f00 164 Pfam PF03100 CcmE 4 137 5.4E-45 T 29-03-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 AM354_RS22730 611f595269795688031ed4f8bb410f00 164 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 2 147 32.319 T 29-03-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 AM354_RS22730 611f595269795688031ed4f8bb410f00 164 Gene3D G3DSA:2.40.50.140 27 131 1.6E-32 T 29-03-2018 AM354_RS22730 611f595269795688031ed4f8bb410f00 164 SUPERFAMILY SSF82093 30 143 7.32E-41 T 29-03-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 AM354_RS05675 0a3c8aca89bc8a24ec049c3da215bfe7 229 SUPERFAMILY SSF52540 6 224 2.31E-48 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS05675 0a3c8aca89bc8a24ec049c3da215bfe7 229 Pfam PF02224 Cytidylate kinase 8 221 1.6E-82 T 29-03-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 AM354_RS05675 0a3c8aca89bc8a24ec049c3da215bfe7 229 Gene3D G3DSA:3.40.50.300 4 224 6.1E-53 T 29-03-2018 AM354_RS05675 0a3c8aca89bc8a24ec049c3da215bfe7 229 TIGRFAM TIGR00017 cmk: cytidylate kinase 6 219 8.0E-93 T 29-03-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 AM354_RS05675 0a3c8aca89bc8a24ec049c3da215bfe7 229 Hamap MF_00238 Cytidylate kinase [cmk]. 6 224 34.246 T 29-03-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 AM354_RS18150 9ba65783ea148baeb0cf2fa522aa98f8 258 Pfam PF00486 Transcriptional regulatory protein, C terminal 30 101 5.8E-12 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS18150 9ba65783ea148baeb0cf2fa522aa98f8 258 SUPERFAMILY SSF46894 24 103 4.54E-12 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS18150 9ba65783ea148baeb0cf2fa522aa98f8 258 Gene3D G3DSA:1.10.10.10 7 104 1.5E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS18150 9ba65783ea148baeb0cf2fa522aa98f8 258 SMART SM00862 22 101 9.4E-11 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS13890 cc6e81833cecadf8e4ea4025aed8e969 545 Pfam PF02096 60Kd inner membrane protein 351 530 4.1E-61 T 29-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AM354_RS13890 cc6e81833cecadf8e4ea4025aed8e969 545 PRINTS PR00701 60kDa inner membrane protein signature 459 481 2.2E-95 T 29-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AM354_RS13890 cc6e81833cecadf8e4ea4025aed8e969 545 PRINTS PR00701 60kDa inner membrane protein signature 248 263 2.2E-95 T 29-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AM354_RS13890 cc6e81833cecadf8e4ea4025aed8e969 545 PRINTS PR00701 60kDa inner membrane protein signature 496 519 2.2E-95 T 29-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AM354_RS13890 cc6e81833cecadf8e4ea4025aed8e969 545 PRINTS PR00701 60kDa inner membrane protein signature 66 87 2.2E-95 T 29-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AM354_RS13890 cc6e81833cecadf8e4ea4025aed8e969 545 PRINTS PR00701 60kDa inner membrane protein signature 158 178 2.2E-95 T 29-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AM354_RS13890 cc6e81833cecadf8e4ea4025aed8e969 545 PRINTS PR00701 60kDa inner membrane protein signature 2 23 2.2E-95 T 29-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AM354_RS13890 cc6e81833cecadf8e4ea4025aed8e969 545 PRINTS PR00701 60kDa inner membrane protein signature 321 341 2.2E-95 T 29-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AM354_RS13890 cc6e81833cecadf8e4ea4025aed8e969 545 PRINTS PR00701 60kDa inner membrane protein signature 412 435 2.2E-95 T 29-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AM354_RS13890 cc6e81833cecadf8e4ea4025aed8e969 545 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 3 349 1.3E-118 T 29-03-2018 IPR028053 Membrane insertase YidC, N-terminal AM354_RS13890 cc6e81833cecadf8e4ea4025aed8e969 545 Pfam PF14849 YidC periplasmic domain 61 340 2.1E-86 T 29-03-2018 IPR028053 Membrane insertase YidC, N-terminal AM354_RS13890 cc6e81833cecadf8e4ea4025aed8e969 545 PRINTS PR01900 YidC translocation/secretion protein signature 465 480 1.3E-29 T 29-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AM354_RS13890 cc6e81833cecadf8e4ea4025aed8e969 545 PRINTS PR01900 YidC translocation/secretion protein signature 336 352 1.3E-29 T 29-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AM354_RS13890 cc6e81833cecadf8e4ea4025aed8e969 545 PRINTS PR01900 YidC translocation/secretion protein signature 485 509 1.3E-29 T 29-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AM354_RS13890 cc6e81833cecadf8e4ea4025aed8e969 545 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 350 530 9.6E-70 T 29-03-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal AM354_RS13890 cc6e81833cecadf8e4ea4025aed8e969 545 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 4 532 26.858 T 29-03-2018 IPR019998 Membrane insertase YidC GO:0016021|GO:0051205 AM354_RS17520 ece3203714c50875896ba04cdffcd557 291 Pfam PF00753 Metallo-beta-lactamase superfamily 60 264 3.9E-22 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS17520 ece3203714c50875896ba04cdffcd557 291 SUPERFAMILY SSF56281 4 278 1.44E-45 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS17520 ece3203714c50875896ba04cdffcd557 291 Gene3D G3DSA:3.60.15.10 1 290 1.3E-49 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS17520 ece3203714c50875896ba04cdffcd557 291 SMART SM00849 61 264 3.1E-22 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS19190 85458c9eff0884cadaf6c2606b40d973 418 Pfam PF07690 Major Facilitator Superfamily 33 380 8.2E-46 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS19190 85458c9eff0884cadaf6c2606b40d973 418 Gene3D G3DSA:1.20.1250.20 18 224 2.4E-28 T 29-03-2018 AM354_RS19190 85458c9eff0884cadaf6c2606b40d973 418 Gene3D G3DSA:1.20.1250.20 225 418 8.9E-32 T 29-03-2018 AM354_RS19190 85458c9eff0884cadaf6c2606b40d973 418 SUPERFAMILY SSF103473 15 417 1.7E-73 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS01775 8bf8f227d34ac5c8705e051b1c028837 229 SMART SM00345 8 66 1.4E-13 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS01775 8bf8f227d34ac5c8705e051b1c028837 229 Pfam PF00392 Bacterial regulatory proteins, gntR family 7 66 4.1E-14 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS01775 8bf8f227d34ac5c8705e051b1c028837 229 Gene3D G3DSA:1.10.10.10 2 67 9.7E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS01775 8bf8f227d34ac5c8705e051b1c028837 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 26 40 8.2E-5 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS01775 8bf8f227d34ac5c8705e051b1c028837 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 40 56 8.2E-5 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS01775 8bf8f227d34ac5c8705e051b1c028837 229 Pfam PF07729 FCD domain 84 204 9.3E-17 T 29-03-2018 IPR011711 GntR, C-terminal AM354_RS01775 8bf8f227d34ac5c8705e051b1c028837 229 SUPERFAMILY SSF48008 87 210 2.88E-14 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM354_RS01775 8bf8f227d34ac5c8705e051b1c028837 229 SMART SM00895 76 205 2.2E-8 T 29-03-2018 IPR011711 GntR, C-terminal AM354_RS01775 8bf8f227d34ac5c8705e051b1c028837 229 Gene3D G3DSA:1.20.120.530 68 219 2.5E-21 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM354_RS01775 8bf8f227d34ac5c8705e051b1c028837 229 SUPERFAMILY SSF46785 7 70 6.28E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS05980 04e52aa8650d0f80ce04ee4a89d8aac3 333 SUPERFAMILY SSF53659 6 331 5.76E-107 T 29-03-2018 AM354_RS05980 04e52aa8650d0f80ce04ee4a89d8aac3 333 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 35 326 1.9E-102 T 29-03-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 AM354_RS05980 04e52aa8650d0f80ce04ee4a89d8aac3 333 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 4 330 35.246 T 29-03-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 AM354_RS05980 04e52aa8650d0f80ce04ee4a89d8aac3 333 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 7 329 1.7E-112 T 29-03-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 AM354_RS05980 04e52aa8650d0f80ce04ee4a89d8aac3 333 Gene3D G3DSA:3.40.718.10 2 333 9.9E-126 T 29-03-2018 AM354_RS14545 03d0887816fdc0c3a2abc27a32874342 502 SUPERFAMILY SSF53067 6 257 1.66E-96 T 29-03-2018 AM354_RS14545 03d0887816fdc0c3a2abc27a32874342 502 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 6 498 4.6E-229 T 29-03-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 AM354_RS14545 03d0887816fdc0c3a2abc27a32874342 502 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 364 384 - T 29-03-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AM354_RS14545 03d0887816fdc0c3a2abc27a32874342 502 SUPERFAMILY SSF53067 257 499 2.75E-86 T 29-03-2018 AM354_RS14545 03d0887816fdc0c3a2abc27a32874342 502 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 263 452 1.5E-61 T 29-03-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AM354_RS14545 03d0887816fdc0c3a2abc27a32874342 502 Gene3D G3DSA:3.30.420.40 251 502 4.9E-80 T 29-03-2018 AM354_RS14545 03d0887816fdc0c3a2abc27a32874342 502 PIRSF PIRSF000538 5 502 2.8E-180 T 29-03-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AM354_RS14545 03d0887816fdc0c3a2abc27a32874342 502 Gene3D G3DSA:3.30.420.40 2 250 1.8E-87 T 29-03-2018 AM354_RS14545 03d0887816fdc0c3a2abc27a32874342 502 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 7 254 9.0E-93 T 29-03-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AM354_RS14545 03d0887816fdc0c3a2abc27a32874342 502 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 137 149 - T 29-03-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AM354_RS14545 03d0887816fdc0c3a2abc27a32874342 502 Hamap MF_00186 Glycerol kinase [glpK]. 5 499 59.934 T 29-03-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 AM354_RS03525 c21c5b8e1bff247476820082ac9654de 239 Pfam PF07702 UTRA domain 94 232 1.6E-31 T 29-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AM354_RS03525 c21c5b8e1bff247476820082ac9654de 239 SUPERFAMILY SSF64288 61 236 6.12E-37 T 29-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AM354_RS03525 c21c5b8e1bff247476820082ac9654de 239 Gene3D G3DSA:1.10.10.10 1 72 1.2E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS03525 c21c5b8e1bff247476820082ac9654de 239 SMART SM00866 94 233 9.6E-27 T 29-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AM354_RS03525 c21c5b8e1bff247476820082ac9654de 239 SUPERFAMILY SSF46785 2 77 3.18E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS03525 c21c5b8e1bff247476820082ac9654de 239 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 73 1.2E-19 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS03525 c21c5b8e1bff247476820082ac9654de 239 TIGRFAM TIGR03337 phnR: phosphonate utilization transcriptional regulator PhnR 9 238 8.5E-115 T 29-03-2018 IPR017722 Phosphonate utilization transcriptional regulator PhnR AM354_RS03525 c21c5b8e1bff247476820082ac9654de 239 SMART SM00345 14 73 1.8E-19 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS03525 c21c5b8e1bff247476820082ac9654de 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 63 4.6E-8 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS03525 c21c5b8e1bff247476820082ac9654de 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 33 47 4.6E-8 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS03525 c21c5b8e1bff247476820082ac9654de 239 Gene3D G3DSA:3.40.1410.10 73 238 9.6E-31 T 29-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AM354_RS19570 38e201bfdaa6c3cac9c29f59fdd6cc50 302 Pfam PF00480 ROK family 6 291 1.1E-48 T 29-03-2018 IPR000600 ROK family Reactome: R-HSA-4085001 AM354_RS19570 38e201bfdaa6c3cac9c29f59fdd6cc50 302 Gene3D G3DSA:3.30.420.40 117 298 3.9E-40 T 29-03-2018 AM354_RS19570 38e201bfdaa6c3cac9c29f59fdd6cc50 302 Gene3D G3DSA:3.30.420.40 2 116 9.7E-20 T 29-03-2018 AM354_RS19570 38e201bfdaa6c3cac9c29f59fdd6cc50 302 SUPERFAMILY SSF53067 2 294 3.29E-40 T 29-03-2018 AM354_RS02515 9a523aaf2380a68aed2b293206ee9de6 538 Pfam PF08548 Peptidase M10 serralysin C terminal 307 534 1.5E-66 T 29-03-2018 IPR013858 Peptidase M10 serralysin, C-terminal GO:0005509|GO:0005615 AM354_RS02515 9a523aaf2380a68aed2b293206ee9de6 538 SUPERFAMILY SSF51120 308 529 1.83E-34 T 29-03-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AM354_RS02515 9a523aaf2380a68aed2b293206ee9de6 538 Gene3D G3DSA:2.150.10.10 302 537 1.8E-45 T 29-03-2018 AM354_RS02515 9a523aaf2380a68aed2b293206ee9de6 538 Pfam PF00413 Matrixin 134 259 2.6E-10 T 29-03-2018 IPR001818 Peptidase M10, metallopeptidase GO:0004222|GO:0006508|GO:0008270|GO:0031012 AM354_RS02515 9a523aaf2380a68aed2b293206ee9de6 538 SUPERFAMILY SSF55486 70 305 6.85E-52 T 29-03-2018 AM354_RS02515 9a523aaf2380a68aed2b293206ee9de6 538 SMART SM00235 93 291 4.4E-8 T 29-03-2018 IPR006026 Peptidase, metallopeptidase GO:0006508|GO:0008237|GO:0008270 AM354_RS02515 9a523aaf2380a68aed2b293206ee9de6 538 Gene3D G3DSA:3.40.390.10 65 301 9.7E-34 T 29-03-2018 IPR024079 Metallopeptidase, catalytic domain GO:0008237 AM354_RS17895 5f5b1e77c45857ebdf8b41989a968ec8 466 SMART SM00304 193 246 9.8E-6 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM354_RS17895 5f5b1e77c45857ebdf8b41989a968ec8 466 PRINTS PR00344 Bacterial sensor protein C-terminal signature 411 421 1.6E-7 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS17895 5f5b1e77c45857ebdf8b41989a968ec8 466 PRINTS PR00344 Bacterial sensor protein C-terminal signature 428 446 1.6E-7 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS17895 5f5b1e77c45857ebdf8b41989a968ec8 466 SUPERFAMILY SSF55874 302 459 6.16E-31 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS17895 5f5b1e77c45857ebdf8b41989a968ec8 466 Gene3D G3DSA:3.30.565.10 319 466 8.8E-31 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS17895 5f5b1e77c45857ebdf8b41989a968ec8 466 SUPERFAMILY SSF47384 231 313 5.3E-15 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS17895 5f5b1e77c45857ebdf8b41989a968ec8 466 SMART SM00388 247 313 5.1E-14 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS17895 5f5b1e77c45857ebdf8b41989a968ec8 466 TIGRFAM TIGR01386 cztS_silS_copS: heavy metal sensor kinase 4 463 3.9E-185 T 29-03-2018 IPR006290 Heavy metal sensor kinase GO:0000160|GO:0004673|GO:0016020 AM354_RS17895 5f5b1e77c45857ebdf8b41989a968ec8 466 Gene3D G3DSA:1.10.287.130 237 309 5.7E-11 T 29-03-2018 AM354_RS17895 5f5b1e77c45857ebdf8b41989a968ec8 466 Pfam PF00512 His Kinase A (phospho-acceptor) domain 248 313 3.1E-10 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS17895 5f5b1e77c45857ebdf8b41989a968ec8 466 SMART SM00387 356 465 9.4E-26 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS17895 5f5b1e77c45857ebdf8b41989a968ec8 466 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 356 462 3.2E-15 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS19090 a7f72268a6104c129821c2dd52617f8a 809 Pfam PF00270 DEAD/DEAH box helicase 14 159 2.0E-9 T 29-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AM354_RS19090 a7f72268a6104c129821c2dd52617f8a 809 Gene3D G3DSA:3.40.50.300 1 159 5.5E-24 T 29-03-2018 AM354_RS19090 a7f72268a6104c129821c2dd52617f8a 809 Pfam PF04408 Helicase associated domain (HA2) 386 444 1.1E-11 T 29-03-2018 IPR007502 Helicase-associated domain GO:0004386 AM354_RS19090 a7f72268a6104c129821c2dd52617f8a 809 SMART SM00847 385 476 8.8E-12 T 29-03-2018 IPR007502 Helicase-associated domain GO:0004386 AM354_RS19090 a7f72268a6104c129821c2dd52617f8a 809 SUPERFAMILY SSF52540 13 336 8.03E-52 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS19090 a7f72268a6104c129821c2dd52617f8a 809 SMART SM00487 2 186 2.5E-16 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AM354_RS19090 a7f72268a6104c129821c2dd52617f8a 809 Gene3D G3DSA:3.40.50.300 177 346 3.5E-43 T 29-03-2018 AM354_RS19090 a7f72268a6104c129821c2dd52617f8a 809 Pfam PF00271 Helicase conserved C-terminal domain 202 324 1.5E-12 T 29-03-2018 IPR001650 Helicase, C-terminal AM354_RS19090 a7f72268a6104c129821c2dd52617f8a 809 PIRSF PIRSF005496 1 809 0.0 T 29-03-2018 AM354_RS19090 a7f72268a6104c129821c2dd52617f8a 809 SMART SM00490 227 325 3.1E-15 T 29-03-2018 IPR001650 Helicase, C-terminal AM354_RS19090 a7f72268a6104c129821c2dd52617f8a 809 Pfam PF08482 ATP-dependent helicase C-terminal 664 796 2.0E-53 T 29-03-2018 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal AM354_RS19090 a7f72268a6104c129821c2dd52617f8a 809 TIGRFAM TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB 1 808 0.0 T 29-03-2018 IPR010225 ATP-dependent helicase HrpB GO:0008026 AM354_RS17100 c8751025334ff2205b250b4e13d1a822 233 Gene3D G3DSA:2.60.120.10 137 233 1.2E-20 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS17100 c8751025334ff2205b250b4e13d1a822 233 SUPERFAMILY SSF51182 1 231 1.6E-43 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS17100 c8751025334ff2205b250b4e13d1a822 233 PIRSF PIRSF006232 1 230 1.6E-29 T 29-03-2018 IPR012093 Pirin Reactome: R-HSA-8935690 AM354_RS17100 c8751025334ff2205b250b4e13d1a822 233 Gene3D G3DSA:2.60.120.10 12 135 5.9E-21 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS17100 c8751025334ff2205b250b4e13d1a822 233 Pfam PF02678 Pirin 5 119 1.2E-19 T 29-03-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 AM354_RS11885 3fd3ed325df230b4d66c64f0a8ff1f03 720 SUPERFAMILY SSF53383 109 568 1.78E-123 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS11885 3fd3ed325df230b4d66c64f0a8ff1f03 720 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 4 103 4.5E-22 T 29-03-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 AM354_RS11885 3fd3ed325df230b4d66c64f0a8ff1f03 720 Gene3D G3DSA:3.90.1150.10 421 600 4.6E-53 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS11885 3fd3ed325df230b4d66c64f0a8ff1f03 720 SUPERFAMILY SSF52172 1 108 3.53E-33 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS11885 3fd3ed325df230b4d66c64f0a8ff1f03 720 Gene3D G3DSA:3.90.100.10 601 720 3.4E-37 T 29-03-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 AM354_RS11885 3fd3ed325df230b4d66c64f0a8ff1f03 720 PIRSF PIRSF009393 1 720 1.3E-296 T 29-03-2018 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 AM354_RS11885 3fd3ed325df230b4d66c64f0a8ff1f03 720 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 109 550 1.6E-198 T 29-03-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 AM354_RS11885 3fd3ed325df230b4d66c64f0a8ff1f03 720 Gene3D G3DSA:3.40.640.10 109 420 2.3E-35 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS11885 3fd3ed325df230b4d66c64f0a8ff1f03 720 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 350 364 - T 29-03-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 AM354_RS11885 3fd3ed325df230b4d66c64f0a8ff1f03 720 Gene3D G3DSA:3.40.50.220 3 108 5.3E-34 T 29-03-2018 IPR027464 Ornithine decarboxylase, N-terminal domain KEGG: 00330+4.1.1.17|KEGG: 00480+4.1.1.17|MetaCyc: PWY-46|MetaCyc: PWY-6305 AM354_RS11885 3fd3ed325df230b4d66c64f0a8ff1f03 720 TIGRFAM TIGR04301 ODC_inducible: ornithine decarboxylase SpeF 1 719 0.0 T 29-03-2018 IPR027568 Ornithine decarboxylase SpeF GO:0004586 KEGG: 00330+4.1.1.17|KEGG: 00480+4.1.1.17|MetaCyc: PWY-46|MetaCyc: PWY-6305 AM354_RS11885 3fd3ed325df230b4d66c64f0a8ff1f03 720 SUPERFAMILY SSF55904 573 719 3.14E-47 T 29-03-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 AM354_RS11885 3fd3ed325df230b4d66c64f0a8ff1f03 720 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 576 705 1.4E-48 T 29-03-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 AM354_RS19860 448d4134a59b0f6c32b33931531ced87 257 SMART SM01134 75 236 7.3E-74 T 29-03-2018 AM354_RS19860 448d4134a59b0f6c32b33931531ced87 257 Gene3D G3DSA:3.40.50.1360 68 253 3.7E-42 T 29-03-2018 AM354_RS19860 448d4134a59b0f6c32b33931531ced87 257 Pfam PF00455 DeoR C terminal sensor domain 77 235 2.0E-52 T 29-03-2018 IPR014036 DeoR C-terminal sensor domain AM354_RS19860 448d4134a59b0f6c32b33931531ced87 257 SUPERFAMILY SSF46785 7 67 2.07E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS19860 448d4134a59b0f6c32b33931531ced87 257 Pfam PF08220 DeoR-like helix-turn-helix domain 8 63 5.1E-17 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS19860 448d4134a59b0f6c32b33931531ced87 257 SUPERFAMILY SSF100950 76 236 2.83E-34 T 29-03-2018 AM354_RS19860 448d4134a59b0f6c32b33931531ced87 257 SMART SM00420 8 60 3.3E-16 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS19860 448d4134a59b0f6c32b33931531ced87 257 Gene3D G3DSA:1.10.10.10 1 63 9.7E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS19860 448d4134a59b0f6c32b33931531ced87 257 ProSitePatterns PS00894 DeoR-type HTH domain signature. 8 42 - T 29-03-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AM354_RS03125 806836d0fd6694964097b7eea76dc45a 341 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 29-03-2018 AM354_RS03125 806836d0fd6694964097b7eea76dc45a 341 Gene3D G3DSA:3.40.50.2300 58 169 3.4E-27 T 29-03-2018 AM354_RS03125 806836d0fd6694964097b7eea76dc45a 341 Gene3D G3DSA:1.10.260.40 2 57 2.0E-20 T 29-03-2018 AM354_RS03125 806836d0fd6694964097b7eea76dc45a 341 Pfam PF13377 Periplasmic binding protein-like domain 171 331 2.4E-39 T 29-03-2018 AM354_RS03125 806836d0fd6694964097b7eea76dc45a 341 SUPERFAMILY SSF53822 60 337 3.34E-95 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS03125 806836d0fd6694964097b7eea76dc45a 341 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 3.2E-6 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS03125 806836d0fd6694964097b7eea76dc45a 341 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 3.2E-6 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS03125 806836d0fd6694964097b7eea76dc45a 341 SMART SM00354 1 71 3.4E-37 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS03125 806836d0fd6694964097b7eea76dc45a 341 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 3.0E-19 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS03125 806836d0fd6694964097b7eea76dc45a 341 Hamap MF_01277 HTH-type transcriptional repressor PurR [purR]. 1 335 62.701 T 29-03-2018 IPR023588 Transcription regulator HTH, PurR GO:0006355 AM354_RS03125 806836d0fd6694964097b7eea76dc45a 341 SUPERFAMILY SSF47413 1 59 7.31E-17 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS03125 806836d0fd6694964097b7eea76dc45a 341 Gene3D G3DSA:3.40.50.2300 170 334 2.5E-51 T 29-03-2018 AM354_RS22425 37b63fa65c121301aa51530e95b3e7f1 268 Pfam PF00005 ABC transporter 21 168 1.8E-30 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS22425 37b63fa65c121301aa51530e95b3e7f1 268 SUPERFAMILY SSF52540 7 230 1.38E-60 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS22425 37b63fa65c121301aa51530e95b3e7f1 268 Gene3D G3DSA:3.40.50.300 1 238 8.5E-62 T 29-03-2018 AM354_RS22425 37b63fa65c121301aa51530e95b3e7f1 268 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS22425 37b63fa65c121301aa51530e95b3e7f1 268 SMART SM00382 29 226 2.5E-14 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS07705 5dd44b2074e4c8ee1bfb8e93124e21fa 327 SMART SM00729 13 217 2.1E-6 T 29-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 AM354_RS07705 5dd44b2074e4c8ee1bfb8e93124e21fa 327 Pfam PF06463 Molybdenum Cofactor Synthesis C 184 310 1.3E-37 T 29-03-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 Reactome: R-HSA-947581 AM354_RS07705 5dd44b2074e4c8ee1bfb8e93124e21fa 327 Pfam PF04055 Radical SAM superfamily 18 179 2.8E-29 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AM354_RS07705 5dd44b2074e4c8ee1bfb8e93124e21fa 327 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 4 327 37.654 T 29-03-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 Reactome: R-HSA-947581 AM354_RS07705 5dd44b2074e4c8ee1bfb8e93124e21fa 327 Gene3D G3DSA:3.20.20.70 1 327 5.6E-71 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS07705 5dd44b2074e4c8ee1bfb8e93124e21fa 327 Pfam PF13353 4Fe-4S single cluster domain 22 123 5.9E-7 T 29-03-2018 AM354_RS07705 5dd44b2074e4c8ee1bfb8e93124e21fa 327 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 19 30 - T 29-03-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 Reactome: R-HSA-947581 AM354_RS07705 5dd44b2074e4c8ee1bfb8e93124e21fa 327 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 4 327 1.6E-105 T 29-03-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 Reactome: R-HSA-947581 AM354_RS07705 5dd44b2074e4c8ee1bfb8e93124e21fa 327 SUPERFAMILY SSF102114 4 276 5.1E-72 T 29-03-2018 AM354_RS05515 3b32b76596159d68ecda159ecadc797d 336 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 292 312 - T 29-03-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 AM354_RS05515 3b32b76596159d68ecda159ecadc797d 336 PIRSF PIRSF000164 12 336 2.7E-98 T 29-03-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 AM354_RS05515 3b32b76596159d68ecda159ecadc797d 336 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 3 336 1.4E-159 T 29-03-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 AM354_RS05515 3b32b76596159d68ecda159ecadc797d 336 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 80 99 - T 29-03-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 AM354_RS05515 3b32b76596159d68ecda159ecadc797d 336 SUPERFAMILY SSF51395 1 334 1.76E-105 T 29-03-2018 AM354_RS05515 3b32b76596159d68ecda159ecadc797d 336 Pfam PF01180 Dihydroorotate dehydrogenase 47 335 4.9E-93 T 29-03-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 AM354_RS05515 3b32b76596159d68ecda159ecadc797d 336 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 2 336 51.781 T 29-03-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 AM354_RS05515 3b32b76596159d68ecda159ecadc797d 336 Gene3D G3DSA:3.20.20.70 1 336 1.4E-79 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS07115 67cab2d9bb32d315e6930cc707b865d3 170 Pfam PF09933 Predicted small integral membrane protein (DUF2165) 8 165 1.8E-33 T 29-03-2018 IPR018681 Protein of unknown function DUF2165, transmembrane AM354_RS16875 ac1413be18c8b7c5e5686e595a1d90bc 638 Pfam PF00874 PRD domain 301 387 1.3E-20 T 29-03-2018 IPR011608 PRD domain GO:0006355 AM354_RS16875 ac1413be18c8b7c5e5686e595a1d90bc 638 Pfam PF08279 HTH domain 17 64 1.1E-7 T 29-03-2018 IPR013196 Helix-turn-helix, type 11 AM354_RS16875 ac1413be18c8b7c5e5686e595a1d90bc 638 Pfam PF05043 Mga helix-turn-helix domain 83 166 2.7E-13 T 29-03-2018 IPR007737 Mga helix-turn-helix domain AM354_RS16875 ac1413be18c8b7c5e5686e595a1d90bc 638 Gene3D G3DSA:3.40.50.2300 399 484 1.5E-11 T 29-03-2018 AM354_RS16875 ac1413be18c8b7c5e5686e595a1d90bc 638 Gene3D G3DSA:1.10.10.10 87 153 1.5E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS16875 ac1413be18c8b7c5e5686e595a1d90bc 638 Gene3D G3DSA:1.10.10.10 6 68 1.7E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS16875 ac1413be18c8b7c5e5686e595a1d90bc 638 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 496 628 5.5E-17 T 29-03-2018 IPR002178 PTS EIIA type-2 domain AM354_RS16875 ac1413be18c8b7c5e5686e595a1d90bc 638 Gene3D G3DSA:1.10.1790.10 194 279 0.025 T 29-03-2018 IPR011608 PRD domain GO:0006355 AM354_RS16875 ac1413be18c8b7c5e5686e595a1d90bc 638 ProSitePatterns PS00894 DeoR-type HTH domain signature. 8 41 - T 29-03-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AM354_RS16875 ac1413be18c8b7c5e5686e595a1d90bc 638 SUPERFAMILY SSF52794 402 479 4.55E-6 T 29-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AM354_RS16875 ac1413be18c8b7c5e5686e595a1d90bc 638 Gene3D G3DSA:3.40.930.10 491 632 9.5E-20 T 29-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 AM354_RS16875 ac1413be18c8b7c5e5686e595a1d90bc 638 SUPERFAMILY SSF55804 491 629 9.94E-25 T 29-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 AM354_RS16875 ac1413be18c8b7c5e5686e595a1d90bc 638 Gene3D G3DSA:1.10.1790.10 280 393 4.8E-23 T 29-03-2018 IPR011608 PRD domain GO:0006355 AM354_RS16875 ac1413be18c8b7c5e5686e595a1d90bc 638 SUPERFAMILY SSF63520 293 392 4.45E-23 T 29-03-2018 IPR011608 PRD domain GO:0006355 AM354_RS12705 faecc77160c7544fd1a0e510f62379e5 377 SUPERFAMILY SSF102114 37 365 2.75E-55 T 29-03-2018 AM354_RS12705 faecc77160c7544fd1a0e510f62379e5 377 Pfam PF04055 Radical SAM superfamily 83 221 6.4E-9 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AM354_RS12705 faecc77160c7544fd1a0e510f62379e5 377 TIGRFAM TIGR02351 thiH: thiazole biosynthesis protein ThiH 5 369 1.2E-161 T 29-03-2018 IPR012726 Thiazole biosynthesis ThiH GO:0005506|GO:0009228|GO:0051539 KEGG: 00730+4.1.99.19|MetaCyc: PWY-6892 AM354_RS12705 faecc77160c7544fd1a0e510f62379e5 377 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 259 362 1.0E-23 T 29-03-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AM354_RS12705 faecc77160c7544fd1a0e510f62379e5 377 SMART SM00876 259 363 4.1E-31 T 29-03-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AM354_RS12705 faecc77160c7544fd1a0e510f62379e5 377 Gene3D G3DSA:3.20.20.70 24 376 2.4E-49 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS07820 483858721bac4ab649f5540f5e62ecab 263 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 20 83 4.4E-13 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS07820 483858721bac4ab649f5540f5e62ecab 263 TIGRFAM TIGR00637 ModE_repress: ModE molybdate transport repressor domain 16 107 7.5E-38 T 29-03-2018 IPR003725 Molybdenum-binding protein ModE, N-terminal AM354_RS07820 483858721bac4ab649f5540f5e62ecab 263 Gene3D G3DSA:2.40.50.100 184 253 3.2E-18 T 29-03-2018 AM354_RS07820 483858721bac4ab649f5540f5e62ecab 263 Pfam PF03459 TOBE domain 124 188 7.7E-17 T 29-03-2018 IPR005116 Transport-associated OB, type 1 AM354_RS07820 483858721bac4ab649f5540f5e62ecab 263 Pfam PF03459 TOBE domain 198 259 2.1E-13 T 29-03-2018 IPR005116 Transport-associated OB, type 1 AM354_RS07820 483858721bac4ab649f5540f5e62ecab 263 SUPERFAMILY SSF50331 173 259 5.74E-16 T 29-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal AM354_RS07820 483858721bac4ab649f5540f5e62ecab 263 SUPERFAMILY SSF46785 2 105 2.35E-25 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS07820 483858721bac4ab649f5540f5e62ecab 263 Gene3D G3DSA:1.10.10.10 1 107 6.9E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS07820 483858721bac4ab649f5540f5e62ecab 263 PIRSF PIRSF005763 1 263 9.1E-96 T 29-03-2018 IPR016462 Molybdate-dependent transcriptional regulator ModE GO:0006355|GO:0015689|GO:0030151 AM354_RS07820 483858721bac4ab649f5540f5e62ecab 263 SUPERFAMILY SSF50331 122 192 1.29E-19 T 29-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal AM354_RS07820 483858721bac4ab649f5540f5e62ecab 263 Gene3D G3DSA:2.40.50.100 108 183 4.6E-19 T 29-03-2018 AM354_RS07820 483858721bac4ab649f5540f5e62ecab 263 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 122 191 3.9E-26 T 29-03-2018 IPR004606 Molybdenum-pterin binding GO:0006810|GO:0030151 AM354_RS02260 664c6bf66884470928a82279d9f1fd81 104 PRINTS PR01274 Metalloprotease inhibitor signature 65 78 1.1E-8 T 29-03-2018 IPR022815 Protease inhibitor I38 AM354_RS02260 664c6bf66884470928a82279d9f1fd81 104 PRINTS PR01274 Metalloprotease inhibitor signature 3 19 1.1E-8 T 29-03-2018 IPR022815 Protease inhibitor I38 AM354_RS02260 664c6bf66884470928a82279d9f1fd81 104 Pfam PF02974 Protease inhibitor Inh 8 93 3.3E-18 T 29-03-2018 IPR021140 Alkaline proteinase inhibitor/ Outer membrane lipoprotein Omp19 AM354_RS02260 664c6bf66884470928a82279d9f1fd81 104 Gene3D G3DSA:2.40.128.10 9 102 1.3E-21 T 29-03-2018 AM354_RS02260 664c6bf66884470928a82279d9f1fd81 104 SUPERFAMILY SSF50882 3 102 4.45E-22 T 29-03-2018 IPR016085 Protease inhibitor, beta-barrel domain GO:0004866 AM354_RS02260 664c6bf66884470928a82279d9f1fd81 104 ProDom PD015804 INHIBITOR PROTEASE METALLOPROTEASE PROTEINASE PRECURSOR SIGNAL PERIPLASMIC METALLOENZYME ALKALINE PRTA-SPECIFIC 13 92 9.0E-12 T 29-03-2018 IPR003086 Metalloprotease inhibitor I38 GO:0004866|GO:0030288 AM354_RS09615 812f76c6846b8367c9a38c9b8b8b4f03 126 Pfam PF01638 HxlR-like helix-turn-helix 20 108 3.4E-20 T 29-03-2018 IPR002577 Helix-turn-helix, HxlR type AM354_RS09615 812f76c6846b8367c9a38c9b8b8b4f03 126 Gene3D G3DSA:1.10.10.10 4 126 3.8E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS09615 812f76c6846b8367c9a38c9b8b8b4f03 126 SUPERFAMILY SSF46785 6 119 3.37E-29 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS20275 2046bc640e3d136ece9a91dec447954b 517 SUPERFAMILY SSF48452 360 488 1.0E-4 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS20275 2046bc640e3d136ece9a91dec447954b 517 Gene3D G3DSA:1.10.10.10 1 105 2.7E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS20275 2046bc640e3d136ece9a91dec447954b 517 Gene3D G3DSA:1.25.40.10 357 514 6.5E-13 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS20275 2046bc640e3d136ece9a91dec447954b 517 Pfam PF00486 Transcriptional regulatory protein, C terminal 28 100 7.4E-17 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS20275 2046bc640e3d136ece9a91dec447954b 517 SMART SM00862 24 100 4.5E-18 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS20275 2046bc640e3d136ece9a91dec447954b 517 SUPERFAMILY SSF46894 2 101 1.64E-20 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS14905 6928337e4ef76a30427de481f854b325 680 Gene3D G3DSA:1.20.1050.40 4 138 1.4E-40 T 29-03-2018 IPR024080 Neurolysin/Thimet oligopeptidase, N-terminal AM354_RS14905 6928337e4ef76a30427de481f854b325 680 Gene3D G3DSA:1.10.1370.10 450 680 1.2E-67 T 29-03-2018 AM354_RS14905 6928337e4ef76a30427de481f854b325 680 Gene3D G3DSA:1.10.1370.10 140 443 3.3E-60 T 29-03-2018 AM354_RS14905 6928337e4ef76a30427de481f854b325 680 Pfam PF01432 Peptidase family M3 222 677 4.0E-167 T 29-03-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 AM354_RS14905 6928337e4ef76a30427de481f854b325 680 SUPERFAMILY SSF55486 1 677 2.62E-211 T 29-03-2018 AM354_RS03560 83fe56963645db082a93b75dc9b9ce4c 292 Pfam PF01435 Peptidase family M48 74 287 2.0E-39 T 29-03-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AM354_RS03560 83fe56963645db082a93b75dc9b9ce4c 292 Gene3D G3DSA:3.30.2010.10 64 157 6.1E-21 T 29-03-2018 AM354_RS03560 83fe56963645db082a93b75dc9b9ce4c 292 Hamap MF_00188 Protease HtpX [htpX]. 1 288 26.534 T 29-03-2018 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 AM354_RS17165 7f53b636a6221cceee3390054b69d532 470 Hamap MF_00675 Uronate isomerase [uxaC]. 2 467 48.96 T 29-03-2018 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 AM354_RS17165 7f53b636a6221cceee3390054b69d532 470 Gene3D G3DSA:3.20.20.140 3 89 8.4E-27 T 29-03-2018 AM354_RS17165 7f53b636a6221cceee3390054b69d532 470 Gene3D G3DSA:3.20.20.140 90 467 8.2E-153 T 29-03-2018 AM354_RS17165 7f53b636a6221cceee3390054b69d532 470 Pfam PF02614 Glucuronate isomerase 1 465 6.2E-224 T 29-03-2018 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 AM354_RS17165 7f53b636a6221cceee3390054b69d532 470 SUPERFAMILY SSF51556 3 465 4.54E-180 T 29-03-2018 IPR032466 Metal-dependent hydrolase AM354_RS18610 b96de3d9d94fd01eefb8d65895dfbbd5 240 SUPERFAMILY SSF52218 23 227 5.03E-65 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS18610 b96de3d9d94fd01eefb8d65895dfbbd5 240 TIGRFAM TIGR02690 resist_ArsH: arsenical resistance protein ArsH 10 226 5.2E-122 T 29-03-2018 IPR014063 Arsenate resistance ArsH AM354_RS18610 b96de3d9d94fd01eefb8d65895dfbbd5 240 Gene3D G3DSA:3.40.50.360 21 225 4.7E-48 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS18610 b96de3d9d94fd01eefb8d65895dfbbd5 240 Pfam PF03358 NADPH-dependent FMN reductase 34 178 8.8E-27 T 29-03-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AM354_RS13675 f4f446d5f3b883ff89cee43de86223e2 206 SUPERFAMILY SSF46609 1 90 1.96E-36 T 29-03-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM354_RS13675 f4f446d5f3b883ff89cee43de86223e2 206 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 97 201 4.8E-41 T 29-03-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM354_RS13675 f4f446d5f3b883ff89cee43de86223e2 206 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 90 3.4E-32 T 29-03-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM354_RS13675 f4f446d5f3b883ff89cee43de86223e2 206 PRINTS PR01703 Manganese superoxide dismutase signature 73 86 1.2E-27 T 29-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM354_RS13675 f4f446d5f3b883ff89cee43de86223e2 206 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 1.2E-27 T 29-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM354_RS13675 f4f446d5f3b883ff89cee43de86223e2 206 PRINTS PR01703 Manganese superoxide dismutase signature 124 132 1.2E-27 T 29-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM354_RS13675 f4f446d5f3b883ff89cee43de86223e2 206 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 1.2E-27 T 29-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM354_RS13675 f4f446d5f3b883ff89cee43de86223e2 206 PRINTS PR01703 Manganese superoxide dismutase signature 166 178 1.2E-27 T 29-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM354_RS13675 f4f446d5f3b883ff89cee43de86223e2 206 PIRSF PIRSF000349 1 206 2.3E-80 T 29-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM354_RS13675 f4f446d5f3b883ff89cee43de86223e2 206 SUPERFAMILY SSF54719 95 204 2.88E-46 T 29-03-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM354_RS13675 f4f446d5f3b883ff89cee43de86223e2 206 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 168 175 - T 29-03-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM354_RS13675 f4f446d5f3b883ff89cee43de86223e2 206 Gene3D G3DSA:1.10.287.990 20 90 1.9E-31 T 29-03-2018 AM354_RS07745 eee5bda0430641fe880c8b3b6899b807 345 SUPERFAMILY SSF102114 5 313 2.22E-95 T 29-03-2018 AM354_RS07745 eee5bda0430641fe880c8b3b6899b807 345 SMART SM00876 220 312 2.5E-49 T 29-03-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AM354_RS07745 eee5bda0430641fe880c8b3b6899b807 345 Hamap MF_01694 Biotin synthase [bioB]. 5 313 41.469 T 29-03-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AM354_RS07745 eee5bda0430641fe880c8b3b6899b807 345 TIGRFAM TIGR00433 bioB: biotin synthase 14 310 4.9E-125 T 29-03-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AM354_RS07745 eee5bda0430641fe880c8b3b6899b807 345 PIRSF PIRSF001619 1 319 3.5E-139 T 29-03-2018 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AM354_RS07745 eee5bda0430641fe880c8b3b6899b807 345 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 220 310 1.7E-20 T 29-03-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AM354_RS07745 eee5bda0430641fe880c8b3b6899b807 345 SMART SM00729 43 255 2.0E-39 T 29-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 AM354_RS07745 eee5bda0430641fe880c8b3b6899b807 345 Pfam PF04055 Radical SAM superfamily 50 202 3.9E-18 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AM354_RS07745 eee5bda0430641fe880c8b3b6899b807 345 Gene3D G3DSA:3.20.20.70 4 315 7.2E-61 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS06215 612f718358afbd43dee4af222ae4b67b 468 Gene3D G3DSA:1.20.5.320 435 468 4.8E-22 T 29-03-2018 AM354_RS06215 612f718358afbd43dee4af222ae4b67b 468 ProSitePatterns PS00461 6-phosphogluconate dehydrogenase signature. 252 264 - T 29-03-2018 IPR006184 6-phosphogluconate-binding site GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AM354_RS06215 612f718358afbd43dee4af222ae4b67b 468 SUPERFAMILY SSF51735 4 175 9.25E-52 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS06215 612f718358afbd43dee4af222ae4b67b 468 SUPERFAMILY SSF48179 176 467 1.57E-131 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM354_RS06215 612f718358afbd43dee4af222ae4b67b 468 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 5 173 1.3E-51 T 29-03-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 AM354_RS06215 612f718358afbd43dee4af222ae4b67b 468 TIGRFAM TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating) 5 468 6.2E-230 T 29-03-2018 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AM354_RS06215 612f718358afbd43dee4af222ae4b67b 468 Gene3D G3DSA:3.40.50.720 1 179 7.2E-35 T 29-03-2018 AM354_RS06215 612f718358afbd43dee4af222ae4b67b 468 PIRSF PIRSF000109 1 468 3.4E-241 T 29-03-2018 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AM354_RS06215 612f718358afbd43dee4af222ae4b67b 468 Gene3D G3DSA:1.10.1040.10 180 434 1.5E-111 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM354_RS06215 612f718358afbd43dee4af222ae4b67b 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 167 195 1.5E-89 T 29-03-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AM354_RS06215 612f718358afbd43dee4af222ae4b67b 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 66 95 1.5E-89 T 29-03-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AM354_RS06215 612f718358afbd43dee4af222ae4b67b 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 4 27 1.5E-89 T 29-03-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AM354_RS06215 612f718358afbd43dee4af222ae4b67b 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 248 275 1.5E-89 T 29-03-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AM354_RS06215 612f718358afbd43dee4af222ae4b67b 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 119 144 1.5E-89 T 29-03-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AM354_RS06215 612f718358afbd43dee4af222ae4b67b 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 356 378 1.5E-89 T 29-03-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AM354_RS06215 612f718358afbd43dee4af222ae4b67b 468 SMART SM01350 178 467 6.5E-224 T 29-03-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AM354_RS06215 612f718358afbd43dee4af222ae4b67b 468 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 178 466 1.6E-133 T 29-03-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AM354_RS20475 923fe0ef6fbdcc6d09bfac6af5d01fe7 530 SMART SM00387 420 530 1.7E-17 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS20475 923fe0ef6fbdcc6d09bfac6af5d01fe7 530 SUPERFAMILY SSF103190 37 165 1.69E-31 T 29-03-2018 IPR029151 Periplasmic sensor domain-like AM354_RS20475 923fe0ef6fbdcc6d09bfac6af5d01fe7 530 Pfam PF17203 Single cache domain 3 34 163 3.7E-20 T 29-03-2018 IPR033463 Single cache domain 3 AM354_RS20475 923fe0ef6fbdcc6d09bfac6af5d01fe7 530 SMART SM00091 212 281 3.5E-4 T 29-03-2018 IPR000014 PAS domain AM354_RS20475 923fe0ef6fbdcc6d09bfac6af5d01fe7 530 SUPERFAMILY SSF55890 324 376 9.02E-6 T 29-03-2018 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 AM354_RS20475 923fe0ef6fbdcc6d09bfac6af5d01fe7 530 Gene3D G3DSA:3.30.450.20 205 322 3.0E-11 T 29-03-2018 AM354_RS20475 923fe0ef6fbdcc6d09bfac6af5d01fe7 530 Gene3D G3DSA:3.30.450.20 29 163 4.3E-19 T 29-03-2018 AM354_RS20475 923fe0ef6fbdcc6d09bfac6af5d01fe7 530 SUPERFAMILY SSF55785 212 313 6.28E-8 T 29-03-2018 IPR000014 PAS domain AM354_RS20475 923fe0ef6fbdcc6d09bfac6af5d01fe7 530 Gene3D G3DSA:1.10.287.130 323 378 1.3E-12 T 29-03-2018 AM354_RS20475 923fe0ef6fbdcc6d09bfac6af5d01fe7 530 Gene3D G3DSA:3.30.565.10 379 530 1.6E-25 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS20475 923fe0ef6fbdcc6d09bfac6af5d01fe7 530 PRINTS PR00344 Bacterial sensor protein C-terminal signature 516 529 1.1E-7 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS20475 923fe0ef6fbdcc6d09bfac6af5d01fe7 530 PRINTS PR00344 Bacterial sensor protein C-terminal signature 461 475 1.1E-7 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS20475 923fe0ef6fbdcc6d09bfac6af5d01fe7 530 PRINTS PR00344 Bacterial sensor protein C-terminal signature 479 489 1.1E-7 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS20475 923fe0ef6fbdcc6d09bfac6af5d01fe7 530 PRINTS PR00344 Bacterial sensor protein C-terminal signature 492 510 1.1E-7 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS20475 923fe0ef6fbdcc6d09bfac6af5d01fe7 530 Pfam PF13188 PAS domain 215 269 2.2E-4 T 29-03-2018 IPR000014 PAS domain AM354_RS20475 923fe0ef6fbdcc6d09bfac6af5d01fe7 530 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 422 529 6.8E-15 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS20475 923fe0ef6fbdcc6d09bfac6af5d01fe7 530 SUPERFAMILY SSF55874 378 530 4.45E-26 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS17080 ab4cff58a480c835c02a032ae86103cc 117 Gene3D G3DSA:3.40.1350.10 9 117 7.1E-32 T 29-03-2018 AM354_RS17080 ab4cff58a480c835c02a032ae86103cc 117 Pfam PF02021 Uncharacterised protein family UPF0102 11 102 1.8E-23 T 29-03-2018 IPR003509 Uncharacterised protein family UPF0102 AM354_RS17080 ab4cff58a480c835c02a032ae86103cc 117 SUPERFAMILY SSF52980 5 113 1.5E-18 T 29-03-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AM354_RS17080 ab4cff58a480c835c02a032ae86103cc 117 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 4 116 2.1E-39 T 29-03-2018 IPR003509 Uncharacterised protein family UPF0102 AM354_RS17080 ab4cff58a480c835c02a032ae86103cc 117 Hamap MF_00048 UPF0102 protein YraN [yraN]. 3 115 21.974 T 29-03-2018 IPR003509 Uncharacterised protein family UPF0102 AM354_RS14655 3ebbed187aec2d2665b1cbfcd8dd011a 482 Gene3D G3DSA:3.30.390.30 348 473 5.3E-25 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AM354_RS14655 3ebbed187aec2d2665b1cbfcd8dd011a 482 Gene3D G3DSA:3.40.50.720 168 336 1.2E-23 T 29-03-2018 AM354_RS14655 3ebbed187aec2d2665b1cbfcd8dd011a 482 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 135 153 1.8E-19 T 29-03-2018 AM354_RS14655 3ebbed187aec2d2665b1cbfcd8dd011a 482 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 277 1.8E-19 T 29-03-2018 AM354_RS14655 3ebbed187aec2d2665b1cbfcd8dd011a 482 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 1.8E-19 T 29-03-2018 AM354_RS14655 3ebbed187aec2d2665b1cbfcd8dd011a 482 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 291 313 1.8E-19 T 29-03-2018 AM354_RS14655 3ebbed187aec2d2665b1cbfcd8dd011a 482 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 174 192 1.8E-19 T 29-03-2018 AM354_RS14655 3ebbed187aec2d2665b1cbfcd8dd011a 482 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 262 276 5.7E-40 T 29-03-2018 AM354_RS14655 3ebbed187aec2d2665b1cbfcd8dd011a 482 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 138 147 5.7E-40 T 29-03-2018 AM354_RS14655 3ebbed187aec2d2665b1cbfcd8dd011a 482 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 306 313 5.7E-40 T 29-03-2018 AM354_RS14655 3ebbed187aec2d2665b1cbfcd8dd011a 482 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 5.7E-40 T 29-03-2018 AM354_RS14655 3ebbed187aec2d2665b1cbfcd8dd011a 482 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 39 54 5.7E-40 T 29-03-2018 AM354_RS14655 3ebbed187aec2d2665b1cbfcd8dd011a 482 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 433 453 5.7E-40 T 29-03-2018 AM354_RS14655 3ebbed187aec2d2665b1cbfcd8dd011a 482 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 411 426 5.7E-40 T 29-03-2018 AM354_RS14655 3ebbed187aec2d2665b1cbfcd8dd011a 482 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 343 364 5.7E-40 T 29-03-2018 AM354_RS14655 3ebbed187aec2d2665b1cbfcd8dd011a 482 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 174 199 5.7E-40 T 29-03-2018 AM354_RS14655 3ebbed187aec2d2665b1cbfcd8dd011a 482 Gene3D G3DSA:3.50.50.60 3 165 3.1E-18 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS14655 3ebbed187aec2d2665b1cbfcd8dd011a 482 SUPERFAMILY SSF51905 1 56 2.19E-43 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS14655 3ebbed187aec2d2665b1cbfcd8dd011a 482 SUPERFAMILY SSF51905 114 365 2.19E-43 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS14655 3ebbed187aec2d2665b1cbfcd8dd011a 482 SUPERFAMILY SSF55424 348 465 5.15E-26 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AM354_RS14655 3ebbed187aec2d2665b1cbfcd8dd011a 482 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 326 6.0E-39 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS14655 3ebbed187aec2d2665b1cbfcd8dd011a 482 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 349 458 1.9E-18 T 29-03-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AM354_RS14655 3ebbed187aec2d2665b1cbfcd8dd011a 482 PIRSF PIRSF000350 2 467 7.0E-58 T 29-03-2018 AM354_RS22310 223efccbc6848d2d0a248f6b159df208 226 SMART SM00448 1 111 5.7E-37 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS22310 223efccbc6848d2d0a248f6b159df208 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 225 3.4E-20 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS22310 223efccbc6848d2d0a248f6b159df208 226 Gene3D G3DSA:3.40.50.2300 1 123 1.7E-31 T 29-03-2018 AM354_RS22310 223efccbc6848d2d0a248f6b159df208 226 SMART SM00862 149 225 1.4E-21 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS22310 223efccbc6848d2d0a248f6b159df208 226 Gene3D G3DSA:1.10.10.10 124 226 2.8E-27 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS22310 223efccbc6848d2d0a248f6b159df208 226 SUPERFAMILY SSF46894 127 225 1.22E-24 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS22310 223efccbc6848d2d0a248f6b159df208 226 Pfam PF00072 Response regulator receiver domain 3 111 6.5E-21 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS22310 223efccbc6848d2d0a248f6b159df208 226 SUPERFAMILY SSF52172 1 123 1.57E-35 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS16285 47fc3c9b6085ef8424fcef62c64f7519 1231 SUPERFAMILY SSF82282 12 404 5.49E-117 T 29-03-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 AM354_RS16285 47fc3c9b6085ef8424fcef62c64f7519 1231 Gene3D G3DSA:3.20.20.20 350 649 5.8E-75 T 29-03-2018 AM354_RS16285 47fc3c9b6085ef8424fcef62c64f7519 1231 Gene3D G3DSA:3.20.20.330 7 342 2.3E-111 T 29-03-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 AM354_RS16285 47fc3c9b6085ef8424fcef62c64f7519 1231 SUPERFAMILY SSF51717 361 635 1.96E-89 T 29-03-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AM354_RS16285 47fc3c9b6085ef8424fcef62c64f7519 1231 Pfam PF02607 B12 binding domain 663 737 2.6E-24 T 29-03-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AM354_RS16285 47fc3c9b6085ef8424fcef62c64f7519 1231 SMART SM01018 661 744 1.2E-44 T 29-03-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AM354_RS16285 47fc3c9b6085ef8424fcef62c64f7519 1231 Pfam PF00809 Pterin binding enzyme 365 603 6.1E-62 T 29-03-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AM354_RS16285 47fc3c9b6085ef8424fcef62c64f7519 1231 Pfam PF02574 Homocysteine S-methyltransferase 22 330 2.5E-79 T 29-03-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 AM354_RS16285 47fc3c9b6085ef8424fcef62c64f7519 1231 Gene3D G3DSA:3.10.196.10 960 1083 1.2E-46 T 29-03-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AM354_RS16285 47fc3c9b6085ef8424fcef62c64f7519 1231 Gene3D G3DSA:3.10.196.10 1084 1231 1.8E-65 T 29-03-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AM354_RS16285 47fc3c9b6085ef8424fcef62c64f7519 1231 TIGRFAM TIGR02082 metH: methionine synthase 18 1196 0.0 T 29-03-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AM354_RS16285 47fc3c9b6085ef8424fcef62c64f7519 1231 SUPERFAMILY SSF47644 657 743 2.75E-28 T 29-03-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AM354_RS16285 47fc3c9b6085ef8424fcef62c64f7519 1231 SUPERFAMILY SSF52242 747 898 6.15E-47 T 29-03-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 AM354_RS16285 47fc3c9b6085ef8424fcef62c64f7519 1231 Gene3D G3DSA:1.10.1240.10 656 735 3.1E-37 T 29-03-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AM354_RS16285 47fc3c9b6085ef8424fcef62c64f7519 1231 SUPERFAMILY SSF56507 907 1230 2.22E-133 T 29-03-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AM354_RS16285 47fc3c9b6085ef8424fcef62c64f7519 1231 Pfam PF02310 B12 binding domain 752 844 1.8E-18 T 29-03-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 AM354_RS16285 47fc3c9b6085ef8424fcef62c64f7519 1231 PIRSF PIRSF000381 6 1199 0.0 T 29-03-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AM354_RS16285 47fc3c9b6085ef8424fcef62c64f7519 1231 Gene3D G3DSA:3.40.50.280 736 907 5.2E-57 T 29-03-2018 AM354_RS16285 47fc3c9b6085ef8424fcef62c64f7519 1231 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 942 1212 9.9E-126 T 29-03-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AM354_RS18340 cdb35fb16f78237aae9f23044c124729 252 Pfam PF14348 Domain of unknown function (DUF4400) 54 249 4.0E-74 T 29-03-2018 IPR022266 Integrating conjugative element protein, PFL4697-type AM354_RS18340 cdb35fb16f78237aae9f23044c124729 252 TIGRFAM TIGR03747 conj_TIGR03747: integrating conjugative element membrane protein, PFL_4697 family 17 252 2.7E-96 T 29-03-2018 IPR022266 Integrating conjugative element protein, PFL4697-type AM354_RS01680 6f1e6c2a702c5079f7a93ede77328f69 338 Gene3D G3DSA:3.40.190.10 142 286 1.9E-29 T 29-03-2018 AM354_RS01680 6f1e6c2a702c5079f7a93ede77328f69 338 PIRSF PIRSF002825 4 338 2.9E-82 T 29-03-2018 IPR026045 Ferric binding protein AM354_RS01680 6f1e6c2a702c5079f7a93ede77328f69 338 SUPERFAMILY SSF53850 33 326 1.55E-75 T 29-03-2018 AM354_RS01680 6f1e6c2a702c5079f7a93ede77328f69 338 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 126 143 - T 29-03-2018 IPR006061 Solute-binding family 1, conserved site GO:0006810 AM354_RS01680 6f1e6c2a702c5079f7a93ede77328f69 338 Gene3D G3DSA:3.40.190.10 25 141 2.2E-9 T 29-03-2018 AM354_RS01680 6f1e6c2a702c5079f7a93ede77328f69 338 Pfam PF13343 Bacterial extracellular solute-binding protein 81 315 5.4E-27 T 29-03-2018 AM354_RS12815 7088e692d12d1dd2ab93d92560efb854 320 Gene3D G3DSA:3.30.930.10 65 270 2.3E-62 T 29-03-2018 AM354_RS12815 7088e692d12d1dd2ab93d92560efb854 320 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 81 317 1.4E-77 T 29-03-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780 AM354_RS12815 7088e692d12d1dd2ab93d92560efb854 320 SUPERFAMILY SSF50037 271 317 1.83E-11 T 29-03-2018 IPR008988 Transcriptional repressor, C-terminal AM354_RS12815 7088e692d12d1dd2ab93d92560efb854 320 Gene3D G3DSA:2.30.30.100 272 318 2.4E-16 T 29-03-2018 AM354_RS12815 7088e692d12d1dd2ab93d92560efb854 320 SUPERFAMILY SSF46785 3 60 8.17E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS12815 7088e692d12d1dd2ab93d92560efb854 320 Pfam PF03099 Biotin/lipoate A/B protein ligase family 84 208 6.5E-25 T 29-03-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 AM354_RS12815 7088e692d12d1dd2ab93d92560efb854 320 Hamap MF_00978 Bifunctional ligase/repressor BirA [birA]. 7 317 33.445 T 29-03-2018 IPR030855 Bifunctional ligase/repressor BirA GO:0004077|GO:0006355 KEGG: 00780+6.3.4.15 AM354_RS12815 7088e692d12d1dd2ab93d92560efb854 320 Gene3D G3DSA:1.10.10.10 1 64 3.7E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS12815 7088e692d12d1dd2ab93d92560efb854 320 Pfam PF08279 HTH domain 9 58 3.8E-11 T 29-03-2018 IPR013196 Helix-turn-helix, type 11 AM354_RS12815 7088e692d12d1dd2ab93d92560efb854 320 Pfam PF02237 Biotin protein ligase C terminal domain 272 317 2.2E-12 T 29-03-2018 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780 AM354_RS12815 7088e692d12d1dd2ab93d92560efb854 320 SUPERFAMILY SSF55681 72 268 2.24E-59 T 29-03-2018 AM354_RS12815 7088e692d12d1dd2ab93d92560efb854 320 TIGRFAM TIGR00122 birA_repr_reg: biotin operon repressor 6 73 3.3E-26 T 29-03-2018 IPR004409 Biotin operon repressor, helix-turn-helix domain GO:0006355 KEGG: 00780+6.3.4.15 AM354_RS11530 87dd5091c595708e13c1a4fcafe7d8d9 726 Pfam PF02554 Carbon starvation protein CstA 34 405 4.7E-161 T 29-03-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 AM354_RS11530 87dd5091c595708e13c1a4fcafe7d8d9 726 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 486 614 1.2E-33 T 29-03-2018 IPR025299 CstA, C-terminal domain AM354_RS22925 ff9ae4942f2984c2ee701f22d7505584 224 SMART SM00448 1 112 1.4E-40 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS22925 ff9ae4942f2984c2ee701f22d7505584 224 Pfam PF00072 Response regulator receiver domain 4 113 2.4E-27 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS22925 ff9ae4942f2984c2ee701f22d7505584 224 Gene3D G3DSA:1.10.10.10 123 222 1.3E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS22925 ff9ae4942f2984c2ee701f22d7505584 224 Gene3D G3DSA:3.40.50.2300 1 122 3.9E-36 T 29-03-2018 AM354_RS22925 ff9ae4942f2984c2ee701f22d7505584 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 144 217 6.7E-18 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS22925 ff9ae4942f2984c2ee701f22d7505584 224 SMART SM00862 144 217 2.0E-17 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS22925 ff9ae4942f2984c2ee701f22d7505584 224 SUPERFAMILY SSF46894 121 218 2.47E-18 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS22925 ff9ae4942f2984c2ee701f22d7505584 224 SUPERFAMILY SSF52172 1 132 7.12E-39 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS14195 94e76114d2df532c5582a29951430a5d 349 SMART SM00091 7 75 1.6E-5 T 29-03-2018 IPR000014 PAS domain AM354_RS14195 94e76114d2df532c5582a29951430a5d 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 281 295 6.7E-11 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS14195 94e76114d2df532c5582a29951430a5d 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 333 346 6.7E-11 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS14195 94e76114d2df532c5582a29951430a5d 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 310 328 6.7E-11 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS14195 94e76114d2df532c5582a29951430a5d 349 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 234 347 9.8E-15 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS14195 94e76114d2df532c5582a29951430a5d 349 Gene3D G3DSA:3.30.450.20 9 104 2.2E-9 T 29-03-2018 AM354_RS14195 94e76114d2df532c5582a29951430a5d 349 SUPERFAMILY SSF47384 121 190 1.12E-12 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS14195 94e76114d2df532c5582a29951430a5d 349 Pfam PF00512 His Kinase A (phospho-acceptor) domain 131 190 1.8E-14 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS14195 94e76114d2df532c5582a29951430a5d 349 SUPERFAMILY SSF55785 11 99 4.35E-5 T 29-03-2018 IPR000014 PAS domain AM354_RS14195 94e76114d2df532c5582a29951430a5d 349 SMART SM00387 233 349 3.1E-31 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS14195 94e76114d2df532c5582a29951430a5d 349 SMART SM00388 129 194 6.2E-15 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS14195 94e76114d2df532c5582a29951430a5d 349 Pfam PF00989 PAS fold 11 97 1.4E-6 T 29-03-2018 IPR013767 PAS fold GO:0006355 AM354_RS14195 94e76114d2df532c5582a29951430a5d 349 Gene3D G3DSA:1.10.287.130 118 190 3.6E-14 T 29-03-2018 AM354_RS14195 94e76114d2df532c5582a29951430a5d 349 SUPERFAMILY SSF55874 198 346 1.83E-35 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS14195 94e76114d2df532c5582a29951430a5d 349 Gene3D G3DSA:3.30.565.10 193 349 2.3E-33 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS25975 062c19a699da3d9152a3ca57c80b386a 514 Pfam PF00571 CBS domain 363 414 2.3E-6 T 29-03-2018 IPR000644 CBS domain AM354_RS25975 062c19a699da3d9152a3ca57c80b386a 514 SMART SM01091 426 507 1.9E-21 T 29-03-2018 IPR005170 Transporter-associated domain AM354_RS25975 062c19a699da3d9152a3ca57c80b386a 514 SUPERFAMILY SSF54631 285 422 2.02E-25 T 29-03-2018 AM354_RS25975 062c19a699da3d9152a3ca57c80b386a 514 Pfam PF03471 Transporter associated domain 429 506 7.0E-17 T 29-03-2018 IPR005170 Transporter-associated domain AM354_RS25975 062c19a699da3d9152a3ca57c80b386a 514 Gene3D G3DSA:3.30.465.10 424 507 6.4E-20 T 29-03-2018 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AM354_RS25975 062c19a699da3d9152a3ca57c80b386a 514 Gene3D G3DSA:3.10.580.10 276 423 1.5E-26 T 29-03-2018 AM354_RS25975 062c19a699da3d9152a3ca57c80b386a 514 Pfam PF03741 Integral membrane protein TerC family 14 203 4.1E-48 T 29-03-2018 IPR005496 Integral membrane protein TerC GO:0016021 AM354_RS25975 062c19a699da3d9152a3ca57c80b386a 514 SUPERFAMILY SSF56176 423 505 1.23E-16 T 29-03-2018 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AM354_RS25975 062c19a699da3d9152a3ca57c80b386a 514 SMART SM00116 304 353 43.0 T 29-03-2018 IPR000644 CBS domain AM354_RS25975 062c19a699da3d9152a3ca57c80b386a 514 SMART SM00116 366 414 0.019 T 29-03-2018 IPR000644 CBS domain AM354_RS01150 97fe1177694e87fa7ff4ebd0f84cf754 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.7E-13 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS01150 97fe1177694e87fa7ff4ebd0f84cf754 301 SUPERFAMILY SSF53850 88 298 1.81E-26 T 29-03-2018 AM354_RS01150 97fe1177694e87fa7ff4ebd0f84cf754 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.4E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS01150 97fe1177694e87fa7ff4ebd0f84cf754 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.4E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS01150 97fe1177694e87fa7ff4ebd0f84cf754 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.4E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS01150 97fe1177694e87fa7ff4ebd0f84cf754 301 Gene3D G3DSA:3.40.190.10 183 278 9.8E-12 T 29-03-2018 AM354_RS01150 97fe1177694e87fa7ff4ebd0f84cf754 301 Gene3D G3DSA:1.10.10.10 1 90 1.6E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS01150 97fe1177694e87fa7ff4ebd0f84cf754 301 SUPERFAMILY SSF46785 1 87 3.29E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS01150 97fe1177694e87fa7ff4ebd0f84cf754 301 Pfam PF03466 LysR substrate binding domain 87 296 9.9E-27 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS01150 97fe1177694e87fa7ff4ebd0f84cf754 301 Gene3D G3DSA:3.40.190.10 91 182 1.3E-11 T 29-03-2018 AM354_RS04645 437dab5ad371ea636162a92cf93379c4 217 Gene3D G3DSA:1.10.3680.10 73 215 1.1E-15 T 29-03-2018 IPR029024 TerB-like AM354_RS04645 437dab5ad371ea636162a92cf93379c4 217 SUPERFAMILY SSF158682 69 206 5.89E-18 T 29-03-2018 AM354_RS04645 437dab5ad371ea636162a92cf93379c4 217 Pfam PF04391 Protein of unknown function (DUF533) 30 209 9.5E-53 T 29-03-2018 IPR007486 Inner membrane protein YebE AM354_RS00335 f76e8701806ff3179d670e34e185e832 183 PIRSF PIRSF000232 1 182 7.1E-64 T 29-03-2018 IPR026021 Putative NAD(P)H nitroreductase YdjA-like AM354_RS00335 f76e8701806ff3179d670e34e185e832 183 SUPERFAMILY SSF55469 1 174 5.89E-38 T 29-03-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AM354_RS00335 f76e8701806ff3179d670e34e185e832 183 Gene3D G3DSA:3.40.109.10 1 183 2.5E-32 T 29-03-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AM354_RS00335 f76e8701806ff3179d670e34e185e832 183 Pfam PF00881 Nitroreductase family 8 161 1.4E-20 T 29-03-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 AM354_RS15250 049bd1604a28b4af03c98e2aa457ab52 1831 Gene3D G3DSA:3.40.47.10 2 271 9.0E-67 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS15250 049bd1604a28b4af03c98e2aa457ab52 1831 SUPERFAMILY SSF53901 413 435 6.76E-79 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS15250 049bd1604a28b4af03c98e2aa457ab52 1831 SUPERFAMILY SSF53901 6 126 6.76E-79 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS15250 049bd1604a28b4af03c98e2aa457ab52 1831 SUPERFAMILY SSF53901 155 381 6.76E-79 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS15250 049bd1604a28b4af03c98e2aa457ab52 1831 Gene3D G3DSA:3.40.47.10 275 440 8.2E-50 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS15250 049bd1604a28b4af03c98e2aa457ab52 1831 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 172 188 - T 29-03-2018 IPR018201 Beta-ketoacyl synthase, active site AM354_RS15250 049bd1604a28b4af03c98e2aa457ab52 1831 Pfam PF00550 Phosphopantetheine attachment site 1757 1820 6.4E-11 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS15250 049bd1604a28b4af03c98e2aa457ab52 1831 Gene3D G3DSA:3.40.366.10 528 672 1.6E-50 T 29-03-2018 AM354_RS15250 049bd1604a28b4af03c98e2aa457ab52 1831 SUPERFAMILY SSF51735 908 1135 3.94E-17 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS15250 049bd1604a28b4af03c98e2aa457ab52 1831 Gene3D G3DSA:3.40.50.720 1151 1397 7.2E-34 T 29-03-2018 AM354_RS15250 049bd1604a28b4af03c98e2aa457ab52 1831 Gene3D G3DSA:3.40.366.10 717 836 2.7E-23 T 29-03-2018 AM354_RS15250 049bd1604a28b4af03c98e2aa457ab52 1831 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 532 831 4.6E-111 T 29-03-2018 IPR020801 Polyketide synthase, acyl transferase domain AM354_RS15250 049bd1604a28b4af03c98e2aa457ab52 1831 SUPERFAMILY SSF55048 658 720 2.09E-9 T 29-03-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 AM354_RS15250 049bd1604a28b4af03c98e2aa457ab52 1831 SUPERFAMILY SSF47336 1747 1820 1.31E-15 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS15250 049bd1604a28b4af03c98e2aa457ab52 1831 SMART SM00825 Beta-ketoacyl synthase 12 438 1.5E-156 T 29-03-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AM354_RS15250 049bd1604a28b4af03c98e2aa457ab52 1831 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1779 1794 - T 29-03-2018 IPR006162 Phosphopantetheine attachment site AM354_RS15250 049bd1604a28b4af03c98e2aa457ab52 1831 Pfam PF00698 Acyl transferase domain 530 828 1.3E-54 T 29-03-2018 IPR014043 Acyl transferase AM354_RS15250 049bd1604a28b4af03c98e2aa457ab52 1831 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 388 492 3.0E-12 T 29-03-2018 IPR032821 Ketoacyl-synthetase, C-terminal extension Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 AM354_RS15250 049bd1604a28b4af03c98e2aa457ab52 1831 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 267 385 1.8E-35 T 29-03-2018 IPR014031 Beta-ketoacyl synthase, C-terminal AM354_RS15250 049bd1604a28b4af03c98e2aa457ab52 1831 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 10 259 1.6E-67 T 29-03-2018 IPR014030 Beta-ketoacyl synthase, N-terminal AM354_RS15250 049bd1604a28b4af03c98e2aa457ab52 1831 SUPERFAMILY SSF51735 1158 1388 1.22E-26 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS15250 049bd1604a28b4af03c98e2aa457ab52 1831 Pfam PF08659 KR domain 1159 1351 1.6E-43 T 29-03-2018 IPR013968 Polyketide synthase, ketoreductase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 AM354_RS15250 049bd1604a28b4af03c98e2aa457ab52 1831 Gene3D G3DSA:1.10.1200.10 1747 1826 5.3E-16 T 29-03-2018 AM354_RS15250 049bd1604a28b4af03c98e2aa457ab52 1831 Pfam PF14765 Polyketide synthase dehydratase 1386 1658 5.3E-26 T 29-03-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 AM354_RS15250 049bd1604a28b4af03c98e2aa457ab52 1831 SUPERFAMILY SSF52151 721 820 2.38E-72 T 29-03-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AM354_RS15250 049bd1604a28b4af03c98e2aa457ab52 1831 SUPERFAMILY SSF52151 529 660 2.38E-72 T 29-03-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AM354_RS15250 049bd1604a28b4af03c98e2aa457ab52 1831 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 1159 1353 9.3E-45 T 29-03-2018 AM354_RS15250 049bd1604a28b4af03c98e2aa457ab52 1831 Gene3D G3DSA:3.30.70.250 673 716 4.5E-16 T 29-03-2018 AM354_RS13865 26f402973e365a57e2a52edd3f2b7a50 366 SMART SM00480 17 362 1.6E-167 T 29-03-2018 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS13865 26f402973e365a57e2a52edd3f2b7a50 366 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 366 7.9E-113 T 29-03-2018 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS13865 26f402973e365a57e2a52edd3f2b7a50 366 Gene3D G3DSA:3.10.150.10 124 247 7.0E-34 T 29-03-2018 AM354_RS13865 26f402973e365a57e2a52edd3f2b7a50 366 SUPERFAMILY SSF55979 125 244 3.59E-31 T 29-03-2018 AM354_RS13865 26f402973e365a57e2a52edd3f2b7a50 366 Pfam PF02767 DNA polymerase III beta subunit, central domain 129 243 2.1E-40 T 29-03-2018 IPR022637 DNA polymerase III, beta chain, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS13865 26f402973e365a57e2a52edd3f2b7a50 366 Gene3D G3DSA:3.10.150.10 1 120 1.2E-26 T 29-03-2018 AM354_RS13865 26f402973e365a57e2a52edd3f2b7a50 366 SUPERFAMILY SSF55979 245 366 5.16E-37 T 29-03-2018 AM354_RS13865 26f402973e365a57e2a52edd3f2b7a50 366 PIRSF PIRSF000804 1 366 4.3E-117 T 29-03-2018 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS13865 26f402973e365a57e2a52edd3f2b7a50 366 Gene3D G3DSA:3.10.150.10 248 366 1.7E-24 T 29-03-2018 AM354_RS13865 26f402973e365a57e2a52edd3f2b7a50 366 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 120 8.8E-39 T 29-03-2018 IPR022634 DNA polymerase III, beta chain, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS13865 26f402973e365a57e2a52edd3f2b7a50 366 SUPERFAMILY SSF55979 1 118 2.28E-26 T 29-03-2018 AM354_RS13865 26f402973e365a57e2a52edd3f2b7a50 366 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 245 365 5.2E-44 T 29-03-2018 IPR022635 DNA polymerase III, beta chain, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS16050 64785cfc4ceead4666b66fb658fcd270 84 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 6 76 2.0E-34 T 29-03-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS16050 64785cfc4ceead4666b66fb658fcd270 84 Gene3D G3DSA:2.40.50.140 5 82 4.8E-35 T 29-03-2018 AM354_RS16050 64785cfc4ceead4666b66fb658fcd270 84 PRINTS PR00973 Ribosomal protein S17 family signature 56 66 4.5E-14 T 29-03-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS16050 64785cfc4ceead4666b66fb658fcd270 84 PRINTS PR00973 Ribosomal protein S17 family signature 24 47 4.5E-14 T 29-03-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS16050 64785cfc4ceead4666b66fb658fcd270 84 PRINTS PR00973 Ribosomal protein S17 family signature 66 73 4.5E-14 T 29-03-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS16050 64785cfc4ceead4666b66fb658fcd270 84 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 5 80 25.177 T 29-03-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS16050 64785cfc4ceead4666b66fb658fcd270 84 ProSitePatterns PS00056 Ribosomal protein S17 signature. 56 68 - T 29-03-2018 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16050 64785cfc4ceead4666b66fb658fcd270 84 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 6 76 1.0E-38 T 29-03-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS16050 64785cfc4ceead4666b66fb658fcd270 84 SUPERFAMILY SSF50249 6 82 1.33E-33 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS16050 64785cfc4ceead4666b66fb658fcd270 84 Pfam PF00366 Ribosomal protein S17 10 76 6.2E-34 T 29-03-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS11655 41b989c9634100188b8116a07a535f0b 141 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 20 112 1.1E-9 T 29-03-2018 AM354_RS11655 41b989c9634100188b8116a07a535f0b 141 SUPERFAMILY SSF54593 16 140 2.34E-25 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS11655 41b989c9634100188b8116a07a535f0b 141 Gene3D G3DSA:3.10.180.10 2 141 1.0E-26 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS16835 707e26e521b97769fb8e7a86029b9a8d 121 Pfam PF14272 Glycine-rich SFCGS 4 117 4.9E-61 T 29-03-2018 IPR020034 Conserved hypothetical protein CHP03577, EF0830/AHA3911 AM354_RS16835 707e26e521b97769fb8e7a86029b9a8d 121 Gene3D G3DSA:3.40.1400.10 15 120 4.4E-4 T 29-03-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 AM354_RS16835 707e26e521b97769fb8e7a86029b9a8d 121 TIGRFAM TIGR03577 EF_0830: conserved hypothetical protein EF_0830/AHA_3911 4 118 1.9E-67 T 29-03-2018 IPR020034 Conserved hypothetical protein CHP03577, EF0830/AHA3911 AM354_RS06460 ffbc706668c5387197f6b96cb58fa545 221 Pfam PF01227 GTP cyclohydrolase I 38 216 1.3E-63 T 29-03-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AM354_RS06460 ffbc706668c5387197f6b96cb58fa545 221 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 144 154 - T 29-03-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AM354_RS06460 ffbc706668c5387197f6b96cb58fa545 221 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 96 112 - T 29-03-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AM354_RS06460 ffbc706668c5387197f6b96cb58fa545 221 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 34 217 34.161 T 29-03-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AM354_RS06460 ffbc706668c5387197f6b96cb58fa545 221 Gene3D G3DSA:1.10.286.10 7 83 6.3E-22 T 29-03-2018 AM354_RS06460 ffbc706668c5387197f6b96cb58fa545 221 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 38 218 1.3E-85 T 29-03-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AM354_RS06460 ffbc706668c5387197f6b96cb58fa545 221 Gene3D G3DSA:3.30.1130.10 87 219 1.5E-46 T 29-03-2018 AM354_RS06460 ffbc706668c5387197f6b96cb58fa545 221 SUPERFAMILY SSF55620 8 219 2.52E-74 T 29-03-2018 AM354_RS04950 d3a079ffd9d1bccc9ed239977e046dfc 94 Pfam PF03795 YCII-related domain 1 79 4.4E-8 T 29-03-2018 IPR005545 YCII-related AM354_RS04950 d3a079ffd9d1bccc9ed239977e046dfc 94 SUPERFAMILY SSF54909 1 80 1.05E-11 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel AM354_RS04950 d3a079ffd9d1bccc9ed239977e046dfc 94 Gene3D G3DSA:3.30.70.1060 1 82 5.1E-10 T 29-03-2018 AM354_RS05195 cbb29b509a6fb85a24526bc86d697554 337 Gene3D G3DSA:1.10.1530.10 297 326 0.2 T 29-03-2018 AM354_RS05195 cbb29b509a6fb85a24526bc86d697554 337 Gene3D G3DSA:1.10.1530.10 5 80 4.2E-20 T 29-03-2018 AM354_RS05195 cbb29b509a6fb85a24526bc86d697554 337 Gene3D G3DSA:3.30.1370.60 81 296 1.6E-79 T 29-03-2018 AM354_RS05195 cbb29b509a6fb85a24526bc86d697554 337 SUPERFAMILY SSF89733 4 336 5.49E-100 T 29-03-2018 IPR003767 Malate/L-lactate dehydrogenase-like GO:0008152|GO:0016491|GO:0055114 AM354_RS05195 cbb29b509a6fb85a24526bc86d697554 337 Pfam PF02615 Malate/L-lactate dehydrogenase 8 332 6.9E-101 T 29-03-2018 IPR003767 Malate/L-lactate dehydrogenase-like GO:0008152|GO:0016491|GO:0055114 AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 Pfam PF01751 Toprim domain 414 523 3.5E-12 T 29-03-2018 IPR006171 TOPRIM domain AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 SMART SM00433 35 625 1.1E-206 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 SUPERFAMILY SSF54211 218 383 8.72E-46 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 5 626 0.0 T 29-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 Gene3D G3DSA:3.30.565.10 18 217 2.1E-65 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 557 621 1.4E-23 T 29-03-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 3 629 47.238 T 29-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 SMART SM00387 28 174 1.1E-19 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 PRINTS PR01098 Topoisomerase IV subunit B signature 175 192 3.7E-153 T 29-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 PRINTS PR01098 Topoisomerase IV subunit B signature 312 327 3.7E-153 T 29-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 PRINTS PR01098 Topoisomerase IV subunit B signature 504 520 3.7E-153 T 29-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 PRINTS PR01098 Topoisomerase IV subunit B signature 239 262 3.7E-153 T 29-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 PRINTS PR01098 Topoisomerase IV subunit B signature 150 165 3.7E-153 T 29-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 PRINTS PR01098 Topoisomerase IV subunit B signature 470 482 3.7E-153 T 29-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 PRINTS PR01098 Topoisomerase IV subunit B signature 449 470 3.7E-153 T 29-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 PRINTS PR01098 Topoisomerase IV subunit B signature 27 40 3.7E-153 T 29-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 PRINTS PR01098 Topoisomerase IV subunit B signature 538 560 3.7E-153 T 29-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 PRINTS PR01098 Topoisomerase IV subunit B signature 136 150 3.7E-153 T 29-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 PRINTS PR01098 Topoisomerase IV subunit B signature 193 214 3.7E-153 T 29-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 PRINTS PR01098 Topoisomerase IV subunit B signature 295 311 3.7E-153 T 29-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 PRINTS PR01098 Topoisomerase IV subunit B signature 363 388 3.7E-153 T 29-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 PRINTS PR01098 Topoisomerase IV subunit B signature 339 362 3.7E-153 T 29-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 29 172 1.9E-16 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 SUPERFAMILY SSF56719 389 622 4.18E-77 T 29-03-2018 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 Gene3D G3DSA:3.40.50.670 397 628 1.2E-77 T 29-03-2018 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 Pfam PF00204 DNA gyrase B 219 385 1.3E-39 T 29-03-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 PRINTS PR00418 DNA topoisomerase II family signature 110 124 3.8E-59 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 PRINTS PR00418 DNA topoisomerase II family signature 498 515 3.8E-59 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 PRINTS PR00418 DNA topoisomerase II family signature 67 80 3.8E-59 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 PRINTS PR00418 DNA topoisomerase II family signature 267 280 3.8E-59 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 PRINTS PR00418 DNA topoisomerase II family signature 480 496 3.8E-59 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 PRINTS PR00418 DNA topoisomerase II family signature 32 47 3.8E-59 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 PRINTS PR00418 DNA topoisomerase II family signature 518 530 3.8E-59 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 PRINTS PR00418 DNA topoisomerase II family signature 561 577 3.8E-59 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 PRINTS PR00418 DNA topoisomerase II family signature 415 429 3.8E-59 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 SUPERFAMILY SSF55874 6 216 2.01E-68 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 Gene3D G3DSA:3.30.230.10 218 392 7.2E-39 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AM354_RS17400 66c953bb64b26f7f5dc8595150918fb5 631 ProSitePatterns PS00177 DNA topoisomerase II signature. 417 425 - T 29-03-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM354_RS06535 7c40c37982f60504c3f0687a056c3aae 299 Pfam PF03466 LysR substrate binding domain 89 290 2.6E-45 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS06535 7c40c37982f60504c3f0687a056c3aae 299 Gene3D G3DSA:3.40.190.10 176 262 7.3E-20 T 29-03-2018 AM354_RS06535 7c40c37982f60504c3f0687a056c3aae 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 2.4E-27 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS06535 7c40c37982f60504c3f0687a056c3aae 299 SUPERFAMILY SSF46785 3 110 1.95E-27 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS06535 7c40c37982f60504c3f0687a056c3aae 299 Gene3D G3DSA:3.40.190.10 88 175 8.0E-23 T 29-03-2018 AM354_RS06535 7c40c37982f60504c3f0687a056c3aae 299 Gene3D G3DSA:1.10.10.10 1 83 4.4E-27 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS06535 7c40c37982f60504c3f0687a056c3aae 299 SUPERFAMILY SSF53850 90 290 8.28E-43 T 29-03-2018 AM354_RS06535 7c40c37982f60504c3f0687a056c3aae 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.6E-12 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS06535 7c40c37982f60504c3f0687a056c3aae 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.6E-12 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS06535 7c40c37982f60504c3f0687a056c3aae 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.6E-12 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS01520 2248cc813c355d5238d80973e42bef15 434 SUPERFAMILY SSF46785 4 84 8.52E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS01520 2248cc813c355d5238d80973e42bef15 434 Gene3D G3DSA:3.90.1150.10 335 431 6.1E-12 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS01520 2248cc813c355d5238d80973e42bef15 434 Gene3D G3DSA:3.40.640.10 138 334 7.9E-24 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS01520 2248cc813c355d5238d80973e42bef15 434 SUPERFAMILY SSF53383 86 428 3.58E-51 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS01520 2248cc813c355d5238d80973e42bef15 434 Gene3D G3DSA:1.10.10.10 6 74 1.3E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS01520 2248cc813c355d5238d80973e42bef15 434 SMART SM00345 14 73 2.6E-17 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS01520 2248cc813c355d5238d80973e42bef15 434 Pfam PF00155 Aminotransferase class I and II 152 421 4.8E-19 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM354_RS01520 2248cc813c355d5238d80973e42bef15 434 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 73 1.1E-16 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS05590 e37ba0ade0ca2cceb76ba705d5514951 1482 Pfam PF16330 MukB hinge domain 645 810 2.6E-74 T 29-03-2018 IPR032520 MukB, hinge domain AM354_RS05590 e37ba0ade0ca2cceb76ba705d5514951 1482 Gene3D G3DSA:1.20.120.570 509 666 1.9E-5 T 29-03-2018 AM354_RS05590 e37ba0ade0ca2cceb76ba705d5514951 1482 Gene3D G3DSA:1.20.5.50 780 909 0.02 T 29-03-2018 AM354_RS05590 e37ba0ade0ca2cceb76ba705d5514951 1482 SUPERFAMILY SSF52540 22 224 1.83E-23 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS05590 e37ba0ade0ca2cceb76ba705d5514951 1482 Gene3D G3DSA:1.10.287.620 976 1117 1.9E-9 T 29-03-2018 AM354_RS05590 e37ba0ade0ca2cceb76ba705d5514951 1482 Hamap MF_01800 Chromosome partition protein MukB [mukB]. 1 1471 11.067 T 29-03-2018 IPR012090 Chromosome partition protein MukB GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 AM354_RS05590 e37ba0ade0ca2cceb76ba705d5514951 1482 Gene3D G3DSA:3.40.1140.10 1 227 1.3E-10 T 29-03-2018 AM354_RS05590 e37ba0ade0ca2cceb76ba705d5514951 1482 Gene3D G3DSA:3.40.50.300 1153 1436 5.5E-5 T 29-03-2018 AM354_RS05590 e37ba0ade0ca2cceb76ba705d5514951 1482 Gene3D G3DSA:1.20.5.730 344 426 0.033 T 29-03-2018 AM354_RS05590 e37ba0ade0ca2cceb76ba705d5514951 1482 SUPERFAMILY SSF52540 1268 1433 1.6E-6 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS05590 e37ba0ade0ca2cceb76ba705d5514951 1482 SUPERFAMILY SSF52540 21 55 1.6E-6 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS05590 e37ba0ade0ca2cceb76ba705d5514951 1482 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1336 1424 2.2E-14 T 29-03-2018 AM354_RS05590 e37ba0ade0ca2cceb76ba705d5514951 1482 Pfam PF04310 MukB N-terminal 2 227 6.3E-125 T 29-03-2018 IPR007406 MukB, N-terminal domain GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 AM354_RS05590 e37ba0ade0ca2cceb76ba705d5514951 1482 PIRSF PIRSF005246 1 1480 0.0 T 29-03-2018 IPR012090 Chromosome partition protein MukB GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 AM354_RS10390 3215355a53c626411bc3c7c7405d5b63 431 SMART SM01193 4 134 1.7E-93 T 29-03-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM354_RS10390 3215355a53c626411bc3c7c7405d5b63 431 Gene3D G3DSA:3.30.390.10 3 127 2.9E-51 T 29-03-2018 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM354_RS10390 3215355a53c626411bc3c7c7405d5b63 431 Pfam PF00113 Enolase, C-terminal TIM barrel domain 144 429 7.4E-140 T 29-03-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM354_RS10390 3215355a53c626411bc3c7c7405d5b63 431 Gene3D G3DSA:3.20.20.120 128 430 8.9E-103 T 29-03-2018 IPR029065 Enolase C-terminal domain-like AM354_RS10390 3215355a53c626411bc3c7c7405d5b63 431 SUPERFAMILY SSF54826 3 138 3.34E-56 T 29-03-2018 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM354_RS10390 3215355a53c626411bc3c7c7405d5b63 431 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 428 4.4E-205 T 29-03-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM354_RS10390 3215355a53c626411bc3c7c7405d5b63 431 PRINTS PR00148 Enolase signature 107 123 1.2E-44 T 29-03-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM354_RS10390 3215355a53c626411bc3c7c7405d5b63 431 PRINTS PR00148 Enolase signature 37 51 1.2E-44 T 29-03-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM354_RS10390 3215355a53c626411bc3c7c7405d5b63 431 PRINTS PR00148 Enolase signature 165 178 1.2E-44 T 29-03-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM354_RS10390 3215355a53c626411bc3c7c7405d5b63 431 PRINTS PR00148 Enolase signature 368 385 1.2E-44 T 29-03-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM354_RS10390 3215355a53c626411bc3c7c7405d5b63 431 PRINTS PR00148 Enolase signature 316 327 1.2E-44 T 29-03-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM354_RS10390 3215355a53c626411bc3c7c7405d5b63 431 PRINTS PR00148 Enolase signature 339 353 1.2E-44 T 29-03-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM354_RS10390 3215355a53c626411bc3c7c7405d5b63 431 Hamap MF_00318 Enolase [eno]. 2 416 44.146 T 29-03-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM354_RS10390 3215355a53c626411bc3c7c7405d5b63 431 SMART SM01192 143 430 8.5E-212 T 29-03-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM354_RS10390 3215355a53c626411bc3c7c7405d5b63 431 SUPERFAMILY SSF51604 143 427 4.1E-127 T 29-03-2018 IPR029065 Enolase C-terminal domain-like AM354_RS10390 3215355a53c626411bc3c7c7405d5b63 431 ProSitePatterns PS00164 Enolase signature. 339 352 - T 29-03-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS10390 3215355a53c626411bc3c7c7405d5b63 431 Pfam PF03952 Enolase, N-terminal domain 4 134 2.5E-58 T 29-03-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM354_RS10390 3215355a53c626411bc3c7c7405d5b63 431 PIRSF PIRSF001400 1 429 2.8E-191 T 29-03-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM354_RS17565 23c9c1b0a0c87a8c60924b2c43ab28a5 56 Pfam PF12464 Maltose acetyltransferase 11 50 4.0E-7 T 29-03-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 AM354_RS01670 a2baf2cc8feb2beea2b01f72dc19b275 345 Pfam PF00005 ABC transporter 19 163 1.6E-34 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS01670 a2baf2cc8feb2beea2b01f72dc19b275 345 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS01670 a2baf2cc8feb2beea2b01f72dc19b275 345 SMART SM00382 28 213 3.4E-19 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS01670 a2baf2cc8feb2beea2b01f72dc19b275 345 SUPERFAMILY SSF52540 4 240 1.93E-69 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS01670 a2baf2cc8feb2beea2b01f72dc19b275 345 SUPERFAMILY SSF50331 243 336 2.66E-6 T 29-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal AM354_RS01670 a2baf2cc8feb2beea2b01f72dc19b275 345 Gene3D G3DSA:3.40.50.300 1 274 1.7E-63 T 29-03-2018 AM354_RS21285 f73ad322ac64acad3f1ac4b45b001c50 249 TIGRFAM TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW 11 236 1.6E-76 T 29-03-2018 IPR013360 Pilus biogenesis/stability type IV, PilW AM354_RS21285 f73ad322ac64acad3f1ac4b45b001c50 249 SUPERFAMILY SSF48452 137 238 4.17E-6 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS21285 f73ad322ac64acad3f1ac4b45b001c50 249 Gene3D G3DSA:1.25.40.10 26 248 3.4E-33 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS21285 f73ad322ac64acad3f1ac4b45b001c50 249 SUPERFAMILY SSF48452 37 170 6.64E-20 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS21285 f73ad322ac64acad3f1ac4b45b001c50 249 SMART SM00028 33 66 0.0016 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AM354_RS21285 f73ad322ac64acad3f1ac4b45b001c50 249 SMART SM00028 67 100 5.3 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AM354_RS21285 f73ad322ac64acad3f1ac4b45b001c50 249 SMART SM00028 137 170 0.031 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AM354_RS21285 f73ad322ac64acad3f1ac4b45b001c50 249 Pfam PF13432 Tetratricopeptide repeat 37 100 7.7E-6 T 29-03-2018 AM354_RS21285 f73ad322ac64acad3f1ac4b45b001c50 249 Pfam PF13174 Tetratricopeptide repeat 139 169 0.019 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AM354_RS09795 304f8abd1359e35b5520024318f76a9f 298 SUPERFAMILY SSF51695 27 295 1.15E-50 T 29-03-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 AM354_RS09795 304f8abd1359e35b5520024318f76a9f 298 Gene3D G3DSA:3.20.20.190 19 298 4.3E-48 T 29-03-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 AM354_RS09795 304f8abd1359e35b5520024318f76a9f 298 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 33 289 9.7E-17 T 29-03-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 AM354_RS10310 66e03268de0edea148aff3d89042c432 475 SUPERFAMILY SSF50447 242 328 4.64E-24 T 29-03-2018 IPR009000 Translation protein, beta-barrel domain AM354_RS10310 66e03268de0edea148aff3d89042c432 475 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 28 434 1.4E-206 T 29-03-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 AM354_RS10310 66e03268de0edea148aff3d89042c432 475 Hamap MF_00062 Sulfate adenylyltransferase subunit 1 [cysN]. 19 475 54.339 T 29-03-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 AM354_RS10310 66e03268de0edea148aff3d89042c432 475 Gene3D G3DSA:2.40.30.10 228 329 2.4E-22 T 29-03-2018 AM354_RS10310 66e03268de0edea148aff3d89042c432 475 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 83 98 - T 29-03-2018 IPR031157 Tr-type G domain, conserved site AM354_RS10310 66e03268de0edea148aff3d89042c432 475 Gene3D G3DSA:2.40.30.10 332 436 1.6E-18 T 29-03-2018 AM354_RS10310 66e03268de0edea148aff3d89042c432 475 Pfam PF00009 Elongation factor Tu GTP binding domain 27 231 2.8E-44 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS10310 66e03268de0edea148aff3d89042c432 475 SUPERFAMILY SSF50465 334 435 1.15E-29 T 29-03-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal AM354_RS10310 66e03268de0edea148aff3d89042c432 475 PRINTS PR00315 GTP-binding elongation factor signature 126 137 8.1E-14 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS10310 66e03268de0edea148aff3d89042c432 475 PRINTS PR00315 GTP-binding elongation factor signature 163 172 8.1E-14 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS10310 66e03268de0edea148aff3d89042c432 475 PRINTS PR00315 GTP-binding elongation factor signature 110 120 8.1E-14 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS10310 66e03268de0edea148aff3d89042c432 475 PRINTS PR00315 GTP-binding elongation factor signature 29 42 8.1E-14 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS10310 66e03268de0edea148aff3d89042c432 475 PRINTS PR00315 GTP-binding elongation factor signature 90 98 8.1E-14 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS10310 66e03268de0edea148aff3d89042c432 475 SUPERFAMILY SSF52540 24 253 1.09E-57 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS10310 66e03268de0edea148aff3d89042c432 475 Gene3D G3DSA:3.40.50.300 4 227 2.0E-40 T 29-03-2018 AM354_RS10310 66e03268de0edea148aff3d89042c432 475 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 34 215 3.8E-16 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AM354_RS05650 bf0eac47fb2667269d3612ebea7f2ae9 326 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 14 319 2.4E-116 T 29-03-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130 AM354_RS05650 bf0eac47fb2667269d3612ebea7f2ae9 326 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 1 325 41.094 T 29-03-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130 AM354_RS05650 bf0eac47fb2667269d3612ebea7f2ae9 326 SUPERFAMILY SSF52540 46 180 3.75E-13 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS05650 bf0eac47fb2667269d3612ebea7f2ae9 326 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 19 322 8.9E-105 T 29-03-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130 AM354_RS05650 bf0eac47fb2667269d3612ebea7f2ae9 326 Gene3D G3DSA:3.40.50.300 46 292 5.6E-9 T 29-03-2018 AM354_RS10120 80d297374e06dc6dc9d69c316d738de9 520 TIGRFAM TIGR01434 glu_cys_ligase: glutamate--cysteine ligase 6 516 1.7E-258 T 29-03-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AM354_RS10120 80d297374e06dc6dc9d69c316d738de9 520 SUPERFAMILY SSF55931 4 515 1.18E-206 T 29-03-2018 AM354_RS10120 80d297374e06dc6dc9d69c316d738de9 520 Hamap MF_00578 Glutamate--cysteine ligase [gshA]. 1 520 232.195 T 29-03-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AM354_RS10120 80d297374e06dc6dc9d69c316d738de9 520 Pfam PF04262 Glutamate-cysteine ligase 10 380 1.2E-174 T 29-03-2018 IPR007370 Glutamate--cysteine ligase GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AM354_RS20420 c6983b461f526d34c0aa81f56f326bb7 390 Pfam PF00529 HlyD membrane-fusion protein of T1SS 36 346 1.6E-15 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AM354_RS20420 c6983b461f526d34c0aa81f56f326bb7 390 TIGRFAM TIGR00998 8a0101: efflux pump membrane protein 20 345 4.0E-137 T 29-03-2018 IPR005694 Efflux pump membrane protein Emr GO:0006855|GO:0015238 AM354_RS20420 c6983b461f526d34c0aa81f56f326bb7 390 SUPERFAMILY SSF111369 194 269 9.42E-10 T 29-03-2018 AM354_RS20420 c6983b461f526d34c0aa81f56f326bb7 390 Gene3D G3DSA:2.40.50.100 209 358 7.9E-7 T 29-03-2018 AM354_RS20420 c6983b461f526d34c0aa81f56f326bb7 390 SUPERFAMILY SSF111369 58 113 3.79E-7 T 29-03-2018 AM354_RS20420 c6983b461f526d34c0aa81f56f326bb7 390 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 61 292 2.5E-13 T 29-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AM354_RS20420 c6983b461f526d34c0aa81f56f326bb7 390 Gene3D G3DSA:2.40.50.100 60 191 7.8E-13 T 29-03-2018 AM354_RS19980 0c1d30881f071f7d38bd4cba347b7e65 175 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 29-03-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AM354_RS19980 0c1d30881f071f7d38bd4cba347b7e65 175 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 1 156 37.584 T 29-03-2018 IPR022927 RNA pyrophosphohydrolase RppH AM354_RS19980 0c1d30881f071f7d38bd4cba347b7e65 175 Gene3D G3DSA:3.90.79.10 1 164 2.5E-35 T 29-03-2018 AM354_RS19980 0c1d30881f071f7d38bd4cba347b7e65 175 Pfam PF00293 NUDIX domain 7 146 2.1E-28 T 29-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AM354_RS19980 0c1d30881f071f7d38bd4cba347b7e65 175 SUPERFAMILY SSF55811 6 153 1.35E-32 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 AM354_RS19980 0c1d30881f071f7d38bd4cba347b7e65 175 PRINTS PR00502 NUDIX hydrolase family signature 47 62 1.1E-7 T 29-03-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AM354_RS19980 0c1d30881f071f7d38bd4cba347b7e65 175 PRINTS PR00502 NUDIX hydrolase family signature 33 47 1.1E-7 T 29-03-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AM354_RS13720 4f3e9dcd74df8ba10e65030c25ce8bee 639 Gene3D G3DSA:3.40.930.10 492 637 8.4E-36 T 29-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 AM354_RS13720 4f3e9dcd74df8ba10e65030c25ce8bee 639 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 496 633 6.4E-33 T 29-03-2018 IPR002178 PTS EIIA type-2 domain AM354_RS13720 4f3e9dcd74df8ba10e65030c25ce8bee 639 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 539 555 - T 29-03-2018 IPR002178 PTS EIIA type-2 domain AM354_RS13720 4f3e9dcd74df8ba10e65030c25ce8bee 639 TIGRFAM TIGR00851 mtlA: PTS system, mannitol-specific IIC component 9 348 2.8E-186 T 29-03-2018 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.197|KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 AM354_RS13720 4f3e9dcd74df8ba10e65030c25ce8bee 639 Gene3D G3DSA:3.40.50.2300 366 471 4.6E-18 T 29-03-2018 AM354_RS13720 4f3e9dcd74df8ba10e65030c25ce8bee 639 SUPERFAMILY SSF55804 496 634 4.58E-41 T 29-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 AM354_RS13720 4f3e9dcd74df8ba10e65030c25ce8bee 639 SUPERFAMILY SSF52794 377 466 5.18E-23 T 29-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AM354_RS13720 4f3e9dcd74df8ba10e65030c25ce8bee 639 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 379 456 3.7E-10 T 29-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AM354_RS13720 4f3e9dcd74df8ba10e65030c25ce8bee 639 Pfam PF02378 Phosphotransferase system, EIIC 18 278 4.2E-19 T 29-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AM354_RS07390 71ddbc25f158a823e23a50da3eedf97b 259 SMART SM00382 31 207 6.1E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS07390 71ddbc25f158a823e23a50da3eedf97b 259 Gene3D G3DSA:3.40.50.300 2 230 7.9E-53 T 29-03-2018 AM354_RS07390 71ddbc25f158a823e23a50da3eedf97b 259 Pfam PF00005 ABC transporter 23 158 1.2E-25 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS07390 71ddbc25f158a823e23a50da3eedf97b 259 SUPERFAMILY SSF52540 5 219 3.06E-52 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS07390 71ddbc25f158a823e23a50da3eedf97b 259 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS15800 9931e936407efb9dc45ab9d5f822fedc 189 Gene3D G3DSA:2.40.100.10 14 189 3.6E-52 T 29-03-2018 IPR029000 Cyclophilin-like domain AM354_RS15800 9931e936407efb9dc45ab9d5f822fedc 189 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 43 58 6.0E-11 T 29-03-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 AM354_RS15800 9931e936407efb9dc45ab9d5f822fedc 189 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 69 81 6.0E-11 T 29-03-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 AM354_RS15800 9931e936407efb9dc45ab9d5f822fedc 189 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 143 158 6.0E-11 T 29-03-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 AM354_RS15800 9931e936407efb9dc45ab9d5f822fedc 189 PIRSF PIRSF001467 9 188 1.2E-28 T 29-03-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 AM354_RS15800 9931e936407efb9dc45ab9d5f822fedc 189 SUPERFAMILY SSF50891 26 188 2.48E-58 T 29-03-2018 IPR029000 Cyclophilin-like domain AM354_RS15800 9931e936407efb9dc45ab9d5f822fedc 189 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 30 187 3.3E-48 T 29-03-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 AM354_RS15800 9931e936407efb9dc45ab9d5f822fedc 189 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 64 81 - T 29-03-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 AM354_RS24090 83a2aa674505d0b2189f6b17c103e4d7 350 SUPERFAMILY SSF56935 32 333 1.62E-38 T 29-03-2018 AM354_RS24090 83a2aa674505d0b2189f6b17c103e4d7 350 Gene3D G3DSA:2.40.160.10 27 349 3.2E-30 T 29-03-2018 AM354_RS24090 83a2aa674505d0b2189f6b17c103e4d7 350 Pfam PF00267 Gram-negative porin 36 349 1.5E-48 T 29-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM354_RS24090 83a2aa674505d0b2189f6b17c103e4d7 350 PRINTS PR00183 E.coli/Salmonella-type porin signature 264 283 8.4E-12 T 29-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM354_RS24090 83a2aa674505d0b2189f6b17c103e4d7 350 PRINTS PR00183 E.coli/Salmonella-type porin signature 28 44 8.4E-12 T 29-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM354_RS24090 83a2aa674505d0b2189f6b17c103e4d7 350 PRINTS PR00183 E.coli/Salmonella-type porin signature 97 119 8.4E-12 T 29-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM354_RS24090 83a2aa674505d0b2189f6b17c103e4d7 350 PRINTS PR00183 E.coli/Salmonella-type porin signature 235 252 8.4E-12 T 29-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM354_RS10420 5af33806308f92d9c6065804ab7c0582 479 Gene3D G3DSA:2.40.10.10 26 163 8.2E-32 T 29-03-2018 AM354_RS10420 5af33806308f92d9c6065804ab7c0582 479 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 394 468 2.1E-11 T 29-03-2018 IPR001478 PDZ domain GO:0005515 AM354_RS10420 5af33806308f92d9c6065804ab7c0582 479 Gene3D G3DSA:2.40.10.10 164 282 2.2E-42 T 29-03-2018 AM354_RS10420 5af33806308f92d9c6065804ab7c0582 479 Pfam PF13365 Trypsin-like peptidase domain 117 253 4.7E-30 T 29-03-2018 AM354_RS10420 5af33806308f92d9c6065804ab7c0582 479 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 39 476 2.5E-163 T 29-03-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 AM354_RS10420 5af33806308f92d9c6065804ab7c0582 479 Gene3D G3DSA:2.30.42.10 392 477 2.8E-15 T 29-03-2018 AM354_RS10420 5af33806308f92d9c6065804ab7c0582 479 Gene3D G3DSA:2.30.42.10 287 391 4.9E-25 T 29-03-2018 AM354_RS10420 5af33806308f92d9c6065804ab7c0582 479 SMART SM00228 399 471 1.2E-10 T 29-03-2018 IPR001478 PDZ domain GO:0005515 AM354_RS10420 5af33806308f92d9c6065804ab7c0582 479 SMART SM00228 292 374 3.5E-11 T 29-03-2018 IPR001478 PDZ domain GO:0005515 AM354_RS10420 5af33806308f92d9c6065804ab7c0582 479 SUPERFAMILY SSF50156 274 383 1.6E-21 T 29-03-2018 IPR001478 PDZ domain GO:0005515 AM354_RS10420 5af33806308f92d9c6065804ab7c0582 479 PRINTS PR00834 HtrA/DegQ protease family signature 246 263 2.0E-59 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AM354_RS10420 5af33806308f92d9c6065804ab7c0582 479 PRINTS PR00834 HtrA/DegQ protease family signature 148 168 2.0E-59 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AM354_RS10420 5af33806308f92d9c6065804ab7c0582 479 PRINTS PR00834 HtrA/DegQ protease family signature 127 139 2.0E-59 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AM354_RS10420 5af33806308f92d9c6065804ab7c0582 479 PRINTS PR00834 HtrA/DegQ protease family signature 224 241 2.0E-59 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AM354_RS10420 5af33806308f92d9c6065804ab7c0582 479 PRINTS PR00834 HtrA/DegQ protease family signature 189 213 2.0E-59 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AM354_RS10420 5af33806308f92d9c6065804ab7c0582 479 PRINTS PR00834 HtrA/DegQ protease family signature 332 344 2.0E-59 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AM354_RS10420 5af33806308f92d9c6065804ab7c0582 479 Pfam PF13180 PDZ domain 294 383 2.1E-14 T 29-03-2018 IPR001478 PDZ domain GO:0005515 AM354_RS10420 5af33806308f92d9c6065804ab7c0582 479 SUPERFAMILY SSF50156 407 475 5.26E-16 T 29-03-2018 IPR001478 PDZ domain GO:0005515 AM354_RS10420 5af33806308f92d9c6065804ab7c0582 479 SUPERFAMILY SSF50494 2 58 6.75E-62 T 29-03-2018 IPR009003 Peptidase S1, PA clan AM354_RS10420 5af33806308f92d9c6065804ab7c0582 479 SUPERFAMILY SSF50494 114 301 6.75E-62 T 29-03-2018 IPR009003 Peptidase S1, PA clan AM354_RS11265 8cdb1a2935aad9c45cd96443e8f26679 254 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 46 243 6.6E-61 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AM354_RS11265 8cdb1a2935aad9c45cd96443e8f26679 254 Gene3D G3DSA:3.90.850.10 39 253 4.2E-73 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AM354_RS11265 8cdb1a2935aad9c45cd96443e8f26679 254 Gene3D G3DSA:2.30.30.370 1 38 3.2E-16 T 29-03-2018 AM354_RS11265 8cdb1a2935aad9c45cd96443e8f26679 254 SUPERFAMILY SSF56529 39 247 1.83E-74 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AM354_RS11265 8cdb1a2935aad9c45cd96443e8f26679 254 TIGRFAM TIGR02303 HpaG-C-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit 2 246 7.5E-119 T 29-03-2018 IPR012684 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit GO:0008704|GO:0018800|GO:1901023 KEGG: 00350+5.3.3.10+4.1.1.68 AM354_RS21040 3637d1fb2dceee5bca636ddb8601715d 302 Gene3D G3DSA:3.40.50.300 63 195 1.0E-11 T 29-03-2018 AM354_RS21040 3637d1fb2dceee5bca636ddb8601715d 302 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 79 97 9.5E-6 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 AM354_RS21040 3637d1fb2dceee5bca636ddb8601715d 302 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 11 31 9.5E-6 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 AM354_RS21040 3637d1fb2dceee5bca636ddb8601715d 302 Pfam PF01926 50S ribosome-binding GTPase 11 125 2.3E-22 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 AM354_RS21040 3637d1fb2dceee5bca636ddb8601715d 302 Hamap MF_00367 GTPase Era [era]. 6 297 35.799 T 29-03-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS21040 3637d1fb2dceee5bca636ddb8601715d 302 Gene3D G3DSA:1.20.120.430 2 62 7.5E-17 T 29-03-2018 AM354_RS21040 3637d1fb2dceee5bca636ddb8601715d 302 SUPERFAMILY SSF54814 182 297 9.81E-42 T 29-03-2018 IPR009019 K homology domain, prokaryotic type GO:0003723 AM354_RS21040 3637d1fb2dceee5bca636ddb8601715d 302 Pfam PF07650 KH domain 209 285 3.5E-19 T 29-03-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS21040 3637d1fb2dceee5bca636ddb8601715d 302 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 8 171 3.4E-40 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AM354_RS21040 3637d1fb2dceee5bca636ddb8601715d 302 Gene3D G3DSA:3.30.300.20 196 300 3.0E-43 T 29-03-2018 IPR015946 K homology domain-like, alpha/beta AM354_RS21040 3637d1fb2dceee5bca636ddb8601715d 302 TIGRFAM TIGR00436 era: GTP-binding protein Era 9 280 5.0E-117 T 29-03-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS21040 3637d1fb2dceee5bca636ddb8601715d 302 SUPERFAMILY SSF52540 11 205 1.5E-43 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS11070 c104529fd642bdf36f5636d75ef479cf 425 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 201 422 1.0E-76 T 29-03-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 AM354_RS11070 c104529fd642bdf36f5636d75ef479cf 425 Pfam PF07670 Nucleoside recognition 99 195 1.3E-8 T 29-03-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 AM354_RS11070 c104529fd642bdf36f5636d75ef479cf 425 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 8 81 3.5E-23 T 29-03-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 AM354_RS11070 c104529fd642bdf36f5636d75ef479cf 425 TIGRFAM TIGR00804 nupC: nucleoside transporter, NupC family 5 422 3.8E-154 T 29-03-2018 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial GO:0005337|GO:0016020|GO:1901642 Reactome: R-HSA-83936 AM354_RS05875 29f4fc6f5ad76a728c8e02d6e88fc4c1 180 Pfam PF12883 Protein of unknown function (DUF3828) 40 162 2.6E-16 T 29-03-2018 IPR024289 Domain of unknown function DUF3828 AM354_RS24075 98ec5196c3cc8b2f2c060cb9c90b1ed9 731 SUPERFAMILY SSF48113 17 425 1.77E-152 T 29-03-2018 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 AM354_RS24075 98ec5196c3cc8b2f2c060cb9c90b1ed9 731 SUPERFAMILY SSF48113 426 730 3.98E-114 T 29-03-2018 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 AM354_RS24075 98ec5196c3cc8b2f2c060cb9c90b1ed9 731 ProSitePatterns PS00436 Peroxidases active site signature. 87 98 - T 29-03-2018 IPR019794 Peroxidase, active site GO:0004601|GO:0055114 AM354_RS24075 98ec5196c3cc8b2f2c060cb9c90b1ed9 731 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 263 286 3.8E-55 T 29-03-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 AM354_RS24075 98ec5196c3cc8b2f2c060cb9c90b1ed9 731 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 23 45 3.8E-55 T 29-03-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 AM354_RS24075 98ec5196c3cc8b2f2c060cb9c90b1ed9 731 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 476 502 3.8E-55 T 29-03-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 AM354_RS24075 98ec5196c3cc8b2f2c060cb9c90b1ed9 731 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 49 62 3.8E-55 T 29-03-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 AM354_RS24075 98ec5196c3cc8b2f2c060cb9c90b1ed9 731 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 64 89 3.8E-55 T 29-03-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 AM354_RS24075 98ec5196c3cc8b2f2c060cb9c90b1ed9 731 ProSitePatterns PS00435 Peroxidases proximal heme-ligand signature. 255 265 - T 29-03-2018 IPR019793 Peroxidases heam-ligand binding site Reactome: R-HSA-2408557 AM354_RS24075 98ec5196c3cc8b2f2c060cb9c90b1ed9 731 Gene3D G3DSA:1.10.420.10 596 706 1.6E-33 T 29-03-2018 AM354_RS24075 98ec5196c3cc8b2f2c060cb9c90b1ed9 731 Gene3D G3DSA:1.10.420.10 229 393 1.4E-40 T 29-03-2018 AM354_RS24075 98ec5196c3cc8b2f2c060cb9c90b1ed9 731 Gene3D G3DSA:1.10.520.10 443 595 1.3E-30 T 29-03-2018 AM354_RS24075 98ec5196c3cc8b2f2c060cb9c90b1ed9 731 Gene3D G3DSA:1.10.520.10 53 196 1.2E-35 T 29-03-2018 AM354_RS24075 98ec5196c3cc8b2f2c060cb9c90b1ed9 731 PRINTS PR00458 Haem peroxidase superfamily signature 147 164 9.2E-18 T 29-03-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 AM354_RS24075 98ec5196c3cc8b2f2c060cb9c90b1ed9 731 PRINTS PR00458 Haem peroxidase superfamily signature 314 329 9.2E-18 T 29-03-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 AM354_RS24075 98ec5196c3cc8b2f2c060cb9c90b1ed9 731 PRINTS PR00458 Haem peroxidase superfamily signature 87 101 9.2E-18 T 29-03-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 AM354_RS24075 98ec5196c3cc8b2f2c060cb9c90b1ed9 731 PRINTS PR00458 Haem peroxidase superfamily signature 255 270 9.2E-18 T 29-03-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 AM354_RS24075 98ec5196c3cc8b2f2c060cb9c90b1ed9 731 PRINTS PR00458 Haem peroxidase superfamily signature 165 177 9.2E-18 T 29-03-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 AM354_RS24075 98ec5196c3cc8b2f2c060cb9c90b1ed9 731 TIGRFAM TIGR00198 cat_per_HPI: catalase/peroxidase HPI 14 730 0.0 T 29-03-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 AM354_RS24075 98ec5196c3cc8b2f2c060cb9c90b1ed9 731 Hamap MF_01961 Catalase-peroxidase [katG]. 2 731 42.127 T 29-03-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 AM354_RS24075 98ec5196c3cc8b2f2c060cb9c90b1ed9 731 Pfam PF00141 Peroxidase 398 703 1.8E-37 T 29-03-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 AM354_RS24075 98ec5196c3cc8b2f2c060cb9c90b1ed9 731 Pfam PF00141 Peroxidase 66 390 3.1E-47 T 29-03-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 AM354_RS16925 0825263d148b619513cfa72309381f13 192 PIRSF PIRSF028513 1 187 3.5E-41 T 29-03-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 AM354_RS16925 0825263d148b619513cfa72309381f13 192 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 14 184 3.3E-54 T 29-03-2018 IPR010664 Lipopolysaccharide assembly, LptC-related AM354_RS16925 0825263d148b619513cfa72309381f13 192 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 7 183 1.0E-56 T 29-03-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 AM354_RS16925 0825263d148b619513cfa72309381f13 192 Hamap MF_01915 Lipopolysaccharide export system protein LptC [lptC]. 4 186 27.33 T 29-03-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 AM354_RS16925 0825263d148b619513cfa72309381f13 192 Gene3D G3DSA:2.60.450.10 88 189 5.5E-6 T 29-03-2018 AM354_RS03040 19636d85f834be2a9e5492aa96d047ea 287 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 44 230 4.3E-38 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AM354_RS03040 19636d85f834be2a9e5492aa96d047ea 287 Gene3D G3DSA:2.40.50.100 43 100 5.5E-16 T 29-03-2018 AM354_RS03040 19636d85f834be2a9e5492aa96d047ea 287 Gene3D G3DSA:1.10.287.470 101 146 1.1E-6 T 29-03-2018 AM354_RS03040 19636d85f834be2a9e5492aa96d047ea 287 Gene3D G3DSA:2.40.50.100 147 237 1.0E-5 T 29-03-2018 AM354_RS03040 19636d85f834be2a9e5492aa96d047ea 287 SUPERFAMILY SSF111369 42 219 7.85E-26 T 29-03-2018 AM354_RS03040 19636d85f834be2a9e5492aa96d047ea 287 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 43 230 4.2E-15 T 29-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AM354_RS03195 b5d301c341f13f28bc02cef9671575cf 138 Gene3D G3DSA:3.90.1010.10 1 137 1.2E-48 T 29-03-2018 AM354_RS03195 b5d301c341f13f28bc02cef9671575cf 138 SUPERFAMILY SSF82649 4 136 6.8E-46 T 29-03-2018 AM354_RS03195 b5d301c341f13f28bc02cef9671575cf 138 Pfam PF02657 Fe-S metabolism associated domain 12 132 3.1E-44 T 29-03-2018 IPR003808 Fe-S metabolism associated domain, SufE-like AM354_RS03195 b5d301c341f13f28bc02cef9671575cf 138 Hamap MF_01832 Cysteine desulfuration protein SufE [sufE]. 1 138 42.533 T 29-03-2018 IPR023939 Cysteine desulfuration protein SufE GO:0006790|GO:0016226 AM354_RS04805 2ed96c34478a7384fa0cce24ab9bdace 341 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 11 333 33.527 T 29-03-2018 IPR003770 Endolytic murein transglycosylase AM354_RS04805 2ed96c34478a7384fa0cce24ab9bdace 341 Gene3D G3DSA:3.30.160.60 75 109 2.2E-18 T 29-03-2018 AM354_RS04805 2ed96c34478a7384fa0cce24ab9bdace 341 Gene3D G3DSA:3.30.160.60 304 338 2.2E-16 T 29-03-2018 AM354_RS04805 2ed96c34478a7384fa0cce24ab9bdace 341 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 2 338 2.2E-119 T 29-03-2018 IPR003770 Endolytic murein transglycosylase AM354_RS04805 2ed96c34478a7384fa0cce24ab9bdace 341 Pfam PF02618 YceG-like family 45 329 3.7E-82 T 29-03-2018 IPR003770 Endolytic murein transglycosylase AM354_RS12050 efc3e952bf207e95decfc6a3377b3779 477 TIGRFAM TIGR00666 PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 46 447 7.0E-169 T 29-03-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM354_RS12050 efc3e952bf207e95decfc6a3377b3779 477 Gene3D G3DSA:3.40.710.10 20 477 1.1E-41 T 29-03-2018 AM354_RS12050 efc3e952bf207e95decfc6a3377b3779 477 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 286 308 3.3E-38 T 29-03-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM354_RS12050 efc3e952bf207e95decfc6a3377b3779 477 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 345 359 3.3E-38 T 29-03-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM354_RS12050 efc3e952bf207e95decfc6a3377b3779 477 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 424 437 3.3E-38 T 29-03-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM354_RS12050 efc3e952bf207e95decfc6a3377b3779 477 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 58 77 3.3E-38 T 29-03-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM354_RS12050 efc3e952bf207e95decfc6a3377b3779 477 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 360 374 3.3E-38 T 29-03-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM354_RS12050 efc3e952bf207e95decfc6a3377b3779 477 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 22 468 6.9E-165 T 29-03-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM354_RS12050 efc3e952bf207e95decfc6a3377b3779 477 SUPERFAMILY SSF56601 23 473 4.56E-101 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM354_RS23950 224286b4693efe85409fe12191bbf6ae 431 Pfam PF00083 Sugar (and other) transporter 21 222 1.9E-23 T 29-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AM354_RS23950 224286b4693efe85409fe12191bbf6ae 431 Pfam PF00083 Sugar (and other) transporter 230 421 1.6E-10 T 29-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AM354_RS23950 224286b4693efe85409fe12191bbf6ae 431 ProSitePatterns PS00216 Sugar transport proteins signature 1. 294 311 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM354_RS23950 224286b4693efe85409fe12191bbf6ae 431 SUPERFAMILY SSF103473 16 423 1.96E-65 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS23950 224286b4693efe85409fe12191bbf6ae 431 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 23 413 1.8E-141 T 29-03-2018 IPR004736 Citrate-proton symport GO:0005215|GO:0006810|GO:0016021 AM354_RS23950 224286b4693efe85409fe12191bbf6ae 431 ProSitePatterns PS00216 Sugar transport proteins signature 1. 76 92 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM354_RS23950 224286b4693efe85409fe12191bbf6ae 431 ProSitePatterns PS00217 Sugar transport proteins signature 2. 126 151 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM354_RS23950 224286b4693efe85409fe12191bbf6ae 431 Gene3D G3DSA:1.20.1250.20 224 423 2.4E-23 T 29-03-2018 AM354_RS23950 224286b4693efe85409fe12191bbf6ae 431 Gene3D G3DSA:1.20.1250.20 2 217 5.4E-24 T 29-03-2018 AM354_RS09465 4d73e605245ec06d1b1af0babeacf29e 231 Gene3D G3DSA:1.20.1080.10 1 231 1.1E-73 T 29-03-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 AM354_RS09465 4d73e605245ec06d1b1af0babeacf29e 231 TIGRFAM TIGR00861 MIP: MIP family channel proteins 7 223 1.4E-63 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM354_RS09465 4d73e605245ec06d1b1af0babeacf29e 231 Pfam PF00230 Major intrinsic protein 3 223 5.4E-53 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM354_RS09465 4d73e605245ec06d1b1af0babeacf29e 231 ProSitePatterns PS00221 MIP family signature. 61 69 - T 29-03-2018 IPR022357 Major intrinsic protein, conserved site GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM354_RS09465 4d73e605245ec06d1b1af0babeacf29e 231 PRINTS PR00783 Major intrinsic protein family signature 3 22 5.0E-52 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM354_RS09465 4d73e605245ec06d1b1af0babeacf29e 231 PRINTS PR00783 Major intrinsic protein family signature 43 67 5.0E-52 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM354_RS09465 4d73e605245ec06d1b1af0babeacf29e 231 PRINTS PR00783 Major intrinsic protein family signature 137 155 5.0E-52 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM354_RS09465 4d73e605245ec06d1b1af0babeacf29e 231 PRINTS PR00783 Major intrinsic protein family signature 80 99 5.0E-52 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM354_RS09465 4d73e605245ec06d1b1af0babeacf29e 231 PRINTS PR00783 Major intrinsic protein family signature 167 189 5.0E-52 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM354_RS09465 4d73e605245ec06d1b1af0babeacf29e 231 PRINTS PR00783 Major intrinsic protein family signature 206 226 5.0E-52 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM354_RS09465 4d73e605245ec06d1b1af0babeacf29e 231 SUPERFAMILY SSF81338 3 228 8.24E-69 T 29-03-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 AM354_RS09465 4d73e605245ec06d1b1af0babeacf29e 231 Hamap MF_01146 Aquaporin Z [aqpZ]. 2 230 35.942 T 29-03-2018 IPR023743 Aquaporin Z GO:0006833|GO:0015250|GO:0016021|GO:0055085 AM354_RS00520 eda34010c716d694ae86850decf32ce2 501 Gene3D G3DSA:3.40.50.300 11 266 1.7E-52 T 29-03-2018 AM354_RS00520 eda34010c716d694ae86850decf32ce2 501 Gene3D G3DSA:3.40.50.300 267 496 2.3E-39 T 29-03-2018 AM354_RS00520 eda34010c716d694ae86850decf32ce2 501 ProSitePatterns PS00211 ABC transporters family signature. 405 419 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS00520 eda34010c716d694ae86850decf32ce2 501 SUPERFAMILY SSF52540 12 239 2.72E-55 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS00520 eda34010c716d694ae86850decf32ce2 501 SUPERFAMILY SSF52540 265 490 1.36E-46 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS00520 eda34010c716d694ae86850decf32ce2 501 Pfam PF00005 ABC transporter 279 432 7.0E-22 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS00520 eda34010c716d694ae86850decf32ce2 501 Pfam PF00005 ABC transporter 29 179 4.4E-26 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS00520 eda34010c716d694ae86850decf32ce2 501 SMART SM00382 38 227 7.5E-10 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS00520 eda34010c716d694ae86850decf32ce2 501 SMART SM00382 287 481 5.9E-4 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS10555 9e493932cf282b84fbedddcb319c7f65 306 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 63 74 - T 29-03-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS10555 9e493932cf282b84fbedddcb319c7f65 306 Gene3D G3DSA:3.30.1490.20 111 171 1.1E-20 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AM354_RS10555 9e493932cf282b84fbedddcb319c7f65 306 Pfam PF07478 D-ala D-ala ligase C-terminus 103 303 6.1E-66 T 29-03-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS10555 9e493932cf282b84fbedddcb319c7f65 306 Pfam PF01820 D-ala D-ala ligase N-terminus 4 86 2.3E-16 T 29-03-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS10555 9e493932cf282b84fbedddcb319c7f65 306 SUPERFAMILY SSF52440 3 96 4.7E-28 T 29-03-2018 IPR016185 Pre-ATP-grasp domain AM354_RS10555 9e493932cf282b84fbedddcb319c7f65 306 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 4 305 1.2E-107 T 29-03-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS10555 9e493932cf282b84fbedddcb319c7f65 306 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 3 306 36.159 T 29-03-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS10555 9e493932cf282b84fbedddcb319c7f65 306 SUPERFAMILY SSF56059 97 302 1.77E-60 T 29-03-2018 AM354_RS10555 9e493932cf282b84fbedddcb319c7f65 306 PIRSF PIRSF039102 38 306 2.0E-91 T 29-03-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS10555 9e493932cf282b84fbedddcb319c7f65 306 PIRSF PIRSF039102 1 44 1.4E-7 T 29-03-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS10555 9e493932cf282b84fbedddcb319c7f65 306 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 248 276 - T 29-03-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS10555 9e493932cf282b84fbedddcb319c7f65 306 Gene3D G3DSA:3.40.50.20 1 106 7.3E-31 T 29-03-2018 AM354_RS10555 9e493932cf282b84fbedddcb319c7f65 306 Gene3D G3DSA:3.30.470.20 172 305 7.1E-41 T 29-03-2018 AM354_RS15850 dbf14f3df1edbb7e10fa3469eed09930 135 SUPERFAMILY SSF82784 1 131 2.09E-42 T 29-03-2018 IPR003718 OsmC/Ohr family AM354_RS15850 dbf14f3df1edbb7e10fa3469eed09930 135 Pfam PF02566 OsmC-like protein 30 127 1.3E-18 T 29-03-2018 IPR003718 OsmC/Ohr family AM354_RS15850 dbf14f3df1edbb7e10fa3469eed09930 135 Gene3D G3DSA:2.20.25.10 1 29 4.9E-15 T 29-03-2018 AM354_RS15850 dbf14f3df1edbb7e10fa3469eed09930 135 Gene3D G3DSA:3.30.300.20 35 133 1.9E-20 T 29-03-2018 IPR015946 K homology domain-like, alpha/beta AM354_RS10930 1ac1d5dc85d31429e0b4bc2ab5daface 819 Pfam PF13840 ACT domain 394 450 9.4E-8 T 29-03-2018 IPR027795 GATS-like ACT domain AM354_RS10930 1ac1d5dc85d31429e0b4bc2ab5daface 819 Gene3D G3DSA:3.40.50.720 465 635 2.0E-30 T 29-03-2018 AM354_RS10930 1ac1d5dc85d31429e0b4bc2ab5daface 819 Gene3D G3DSA:3.30.70.260 384 464 2.6E-17 T 29-03-2018 AM354_RS10930 1ac1d5dc85d31429e0b4bc2ab5daface 819 SUPERFAMILY SSF55021 304 381 2.29E-23 T 29-03-2018 AM354_RS10930 1ac1d5dc85d31429e0b4bc2ab5daface 819 Gene3D G3DSA:3.40.1160.10 1 289 8.5E-60 T 29-03-2018 AM354_RS10930 1ac1d5dc85d31429e0b4bc2ab5daface 819 Gene3D G3DSA:3.30.70.260 290 383 3.0E-28 T 29-03-2018 AM354_RS10930 1ac1d5dc85d31429e0b4bc2ab5daface 819 Gene3D G3DSA:3.30.360.10 636 793 7.0E-54 T 29-03-2018 AM354_RS10930 1ac1d5dc85d31429e0b4bc2ab5daface 819 SUPERFAMILY SSF53633 1 298 1.7E-73 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase AM354_RS10930 1ac1d5dc85d31429e0b4bc2ab5daface 819 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 660 682 - T 29-03-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 AM354_RS10930 1ac1d5dc85d31429e0b4bc2ab5daface 819 SUPERFAMILY SSF51735 464 636 2.73E-39 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS10930 1ac1d5dc85d31429e0b4bc2ab5daface 819 PIRSF PIRSF000727 1 817 0.0 T 29-03-2018 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I GO:0004072|GO:0004412|GO:0009067|GO:0055114 KEGG: 00260+2.7.2.4+1.1.1.3|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4+1.1.1.3|KEGG: 00300+2.7.2.4+1.1.1.3|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 AM354_RS10930 1ac1d5dc85d31429e0b4bc2ab5daface 819 SUPERFAMILY SSF55021 383 476 6.7E-21 T 29-03-2018 AM354_RS10930 1ac1d5dc85d31429e0b4bc2ab5daface 819 Pfam PF01842 ACT domain 324 376 6.5E-9 T 29-03-2018 IPR002912 ACT domain AM354_RS10930 1ac1d5dc85d31429e0b4bc2ab5daface 819 ProSitePatterns PS00324 Aspartokinase signature. 3 11 - T 29-03-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 AM354_RS10930 1ac1d5dc85d31429e0b4bc2ab5daface 819 Pfam PF00696 Amino acid kinase family 2 284 1.7E-44 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase AM354_RS10930 1ac1d5dc85d31429e0b4bc2ab5daface 819 SUPERFAMILY SSF55347 614 797 1.18E-51 T 29-03-2018 AM354_RS10930 1ac1d5dc85d31429e0b4bc2ab5daface 819 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 472 605 4.2E-29 T 29-03-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 AM354_RS10930 1ac1d5dc85d31429e0b4bc2ab5daface 819 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 3 460 5.1E-143 T 29-03-2018 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 AM354_RS10930 1ac1d5dc85d31429e0b4bc2ab5daface 819 Pfam PF00742 Homoserine dehydrogenase 614 810 2.7E-48 T 29-03-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 AM354_RS05235 ce20d3500807d99193b32401d2d3eeb5 239 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 98 118 - T 29-03-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 AM354_RS05235 ce20d3500807d99193b32401d2d3eeb5 239 SUPERFAMILY SSF52096 7 221 2.39E-59 T 29-03-2018 IPR029045 ClpP/crotonase-like domain AM354_RS05235 ce20d3500807d99193b32401d2d3eeb5 239 Gene3D G3DSA:3.90.226.10 2 239 2.2E-59 T 29-03-2018 AM354_RS05235 ce20d3500807d99193b32401d2d3eeb5 239 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 229 6.3E-47 T 29-03-2018 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AM354_RS13680 53a5269c0dfbec10c0c18e8e3079ef5c 642 SMART SM00283 359 606 1.9E-91 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM354_RS13680 53a5269c0dfbec10c0c18e8e3079ef5c 642 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 418 573 1.6E-54 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM354_RS13680 53a5269c0dfbec10c0c18e8e3079ef5c 642 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 384 406 - T 29-03-2018 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site AM354_RS13680 53a5269c0dfbec10c0c18e8e3079ef5c 642 Gene3D G3DSA:1.10.287.950 414 610 2.6E-47 T 29-03-2018 AM354_RS13680 53a5269c0dfbec10c0c18e8e3079ef5c 642 Gene3D G3DSA:1.10.287.950 79 413 4.2E-15 T 29-03-2018 AM354_RS13680 53a5269c0dfbec10c0c18e8e3079ef5c 642 SUPERFAMILY SSF58104 326 607 9.94E-74 T 29-03-2018 AM354_RS13680 53a5269c0dfbec10c0c18e8e3079ef5c 642 SMART SM01358 39 284 4.5E-39 T 29-03-2018 IPR032255 Helical bimodular sensor domain AM354_RS13680 53a5269c0dfbec10c0c18e8e3079ef5c 642 Pfam PF16591 Helical bimodular sensor domain 47 278 4.2E-15 T 29-03-2018 IPR032255 Helical bimodular sensor domain AM354_RS13680 53a5269c0dfbec10c0c18e8e3079ef5c 642 SMART SM00304 306 358 1.1E-6 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM354_RS13680 53a5269c0dfbec10c0c18e8e3079ef5c 642 Pfam PF00672 HAMP domain 308 354 1.1E-8 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM354_RS15980 db5358fb2a934f797f9cb6253a65cd1b 704 Gene3D G3DSA:3.30.70.240 625 702 5.8E-29 T 29-03-2018 AM354_RS15980 db5358fb2a934f797f9cb6253a65cd1b 704 Gene3D G3DSA:3.30.230.10 501 624 2.6E-39 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AM354_RS15980 db5358fb2a934f797f9cb6253a65cd1b 704 SUPERFAMILY SSF50447 271 411 3.09E-35 T 29-03-2018 IPR009000 Translation protein, beta-barrel domain AM354_RS15980 db5358fb2a934f797f9cb6253a65cd1b 704 Gene3D G3DSA:3.40.50.300 1 293 3.7E-58 T 29-03-2018 AM354_RS15980 db5358fb2a934f797f9cb6253a65cd1b 704 Pfam PF14492 Elongation Factor G, domain II 411 485 1.1E-33 T 29-03-2018 AM354_RS15980 db5358fb2a934f797f9cb6253a65cd1b 704 Pfam PF00009 Elongation factor Tu GTP binding domain 9 287 2.1E-66 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS15980 db5358fb2a934f797f9cb6253a65cd1b 704 Gene3D G3DSA:3.30.70.870 407 500 2.5E-36 T 29-03-2018 AM354_RS15980 db5358fb2a934f797f9cb6253a65cd1b 704 Gene3D G3DSA:2.40.30.10 295 406 4.9E-30 T 29-03-2018 AM354_RS15980 db5358fb2a934f797f9cb6253a65cd1b 704 SMART SM00838 611 698 1.1E-49 T 29-03-2018 IPR000640 Elongation factor EFG, domain V-like AM354_RS15980 db5358fb2a934f797f9cb6253a65cd1b 704 SUPERFAMILY SSF52540 6 287 3.81E-106 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS15980 db5358fb2a934f797f9cb6253a65cd1b 704 Pfam PF03144 Elongation factor Tu domain 2 331 398 2.2E-16 T 29-03-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AM354_RS15980 db5358fb2a934f797f9cb6253a65cd1b 704 SUPERFAMILY SSF54211 486 610 1.31E-39 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM354_RS15980 db5358fb2a934f797f9cb6253a65cd1b 704 Pfam PF00679 Elongation factor G C-terminus 611 696 2.8E-28 T 29-03-2018 IPR000640 Elongation factor EFG, domain V-like AM354_RS15980 db5358fb2a934f797f9cb6253a65cd1b 704 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 703 0.0 T 29-03-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AM354_RS15980 db5358fb2a934f797f9cb6253a65cd1b 704 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 10 187 2.5E-32 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AM354_RS15980 db5358fb2a934f797f9cb6253a65cd1b 704 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 29-03-2018 IPR031157 Tr-type G domain, conserved site AM354_RS15980 db5358fb2a934f797f9cb6253a65cd1b 704 PRINTS PR00315 GTP-binding elongation factor signature 85 95 1.7E-16 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS15980 db5358fb2a934f797f9cb6253a65cd1b 704 PRINTS PR00315 GTP-binding elongation factor signature 137 146 1.7E-16 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS15980 db5358fb2a934f797f9cb6253a65cd1b 704 PRINTS PR00315 GTP-binding elongation factor signature 101 112 1.7E-16 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS15980 db5358fb2a934f797f9cb6253a65cd1b 704 PRINTS PR00315 GTP-binding elongation factor signature 12 25 1.7E-16 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS15980 db5358fb2a934f797f9cb6253a65cd1b 704 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.7E-16 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS15980 db5358fb2a934f797f9cb6253a65cd1b 704 Pfam PF03764 Elongation factor G, domain IV 486 609 5.4E-44 T 29-03-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 AM354_RS15980 db5358fb2a934f797f9cb6253a65cd1b 704 Hamap MF_00054_B Elongation factor G [fusA]. 6 702 111.79 T 29-03-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AM354_RS15980 db5358fb2a934f797f9cb6253a65cd1b 704 SUPERFAMILY SSF54980 611 700 7.19E-27 T 29-03-2018 IPR035647 EF-G domain III/V-like AM354_RS15980 db5358fb2a934f797f9cb6253a65cd1b 704 SMART SM00889 487 609 4.0E-71 T 29-03-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 AM354_RS15980 db5358fb2a934f797f9cb6253a65cd1b 704 SUPERFAMILY SSF54980 411 488 3.02E-25 T 29-03-2018 IPR035647 EF-G domain III/V-like AM354_RS07795 dd99b7d3a9cd22110546f3d4822c86bf 262 Gene3D G3DSA:3.40.50.300 2 244 3.2E-58 T 29-03-2018 AM354_RS07795 dd99b7d3a9cd22110546f3d4822c86bf 262 SUPERFAMILY SSF52540 11 235 5.22E-57 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS07795 dd99b7d3a9cd22110546f3d4822c86bf 262 Pfam PF00005 ABC transporter 25 174 2.5E-27 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS07795 dd99b7d3a9cd22110546f3d4822c86bf 262 SMART SM00382 34 218 8.1E-14 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS12330 88870ab2fddf695a8f7ab6221a3890a9 313 Pfam PF01715 IPP transferase 46 291 4.1E-84 T 29-03-2018 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 AM354_RS12330 88870ab2fddf695a8f7ab6221a3890a9 313 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 12 300 6.7E-120 T 29-03-2018 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 AM354_RS12330 88870ab2fddf695a8f7ab6221a3890a9 313 Gene3D G3DSA:1.10.287.890 207 289 1.6E-22 T 29-03-2018 AM354_RS12330 88870ab2fddf695a8f7ab6221a3890a9 313 Gene3D G3DSA:3.40.50.300 8 201 5.1E-61 T 29-03-2018 AM354_RS12330 88870ab2fddf695a8f7ab6221a3890a9 313 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 12 312 29.571 T 29-03-2018 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 AM354_RS12330 88870ab2fddf695a8f7ab6221a3890a9 313 SUPERFAMILY SSF52540 13 158 6.32E-20 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS12185 342eb52c861a707a61c818207f284147 441 SUPERFAMILY SSF54631 200 335 1.08E-20 T 29-03-2018 AM354_RS12185 342eb52c861a707a61c818207f284147 441 Gene3D G3DSA:3.30.465.10 346 433 6.1E-22 T 29-03-2018 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AM354_RS12185 342eb52c861a707a61c818207f284147 441 SUPERFAMILY SSF56176 344 428 4.09E-22 T 29-03-2018 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AM354_RS12185 342eb52c861a707a61c818207f284147 441 Pfam PF01595 Domain of unknown function DUF21 6 197 6.9E-38 T 29-03-2018 IPR002550 Domain of unknown function DUF21 AM354_RS12185 342eb52c861a707a61c818207f284147 441 Pfam PF00571 CBS domain 287 333 0.003 T 29-03-2018 IPR000644 CBS domain AM354_RS12185 342eb52c861a707a61c818207f284147 441 Gene3D G3DSA:3.10.580.10 193 345 4.6E-21 T 29-03-2018 AM354_RS12185 342eb52c861a707a61c818207f284147 441 SMART SM01091 346 426 7.4E-27 T 29-03-2018 IPR005170 Transporter-associated domain AM354_RS12185 342eb52c861a707a61c818207f284147 441 SMART SM00116 285 333 10.0 T 29-03-2018 IPR000644 CBS domain AM354_RS12185 342eb52c861a707a61c818207f284147 441 SMART SM00116 221 270 1.3 T 29-03-2018 IPR000644 CBS domain AM354_RS12185 342eb52c861a707a61c818207f284147 441 Pfam PF03471 Transporter associated domain 348 425 1.5E-20 T 29-03-2018 IPR005170 Transporter-associated domain AM354_RS10710 8966b8d2701467a63e4ca023e87e06f4 97 Pfam PF13710 ACT domain 19 79 1.1E-9 T 29-03-2018 AM354_RS10710 8966b8d2701467a63e4ca023e87e06f4 97 Gene3D G3DSA:3.30.70.260 1 97 1.5E-19 T 29-03-2018 AM354_RS10710 8966b8d2701467a63e4ca023e87e06f4 97 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 16 79 2.0E-16 T 29-03-2018 AM354_RS10710 8966b8d2701467a63e4ca023e87e06f4 97 SUPERFAMILY SSF55021 10 82 1.04E-16 T 29-03-2018 AM354_RS07735 d7d538bf3f75b786b57d42dbc7cc7c1e 255 Pfam PF08241 Methyltransferase domain 51 142 1.1E-25 T 29-03-2018 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AM354_RS07735 d7d538bf3f75b786b57d42dbc7cc7c1e 255 Hamap MF_00835 Malonyl-[acyl-carrier protein] O-methyltransferase [bioC]. 8 254 30.912 T 29-03-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00670+2.1.1.19|KEGG: 00780+2.1.1.197|MetaCyc: PWY-2201|MetaCyc: PWY-6519 AM354_RS07735 d7d538bf3f75b786b57d42dbc7cc7c1e 255 SUPERFAMILY SSF53335 14 215 1.69E-41 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS07735 d7d538bf3f75b786b57d42dbc7cc7c1e 255 TIGRFAM TIGR02072 BioC: malonyl-acyl carrier protein O-methyltransferase BioC 16 254 3.7E-66 T 29-03-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00670+2.1.1.19|KEGG: 00780+2.1.1.197|MetaCyc: PWY-2201|MetaCyc: PWY-6519 AM354_RS07735 d7d538bf3f75b786b57d42dbc7cc7c1e 255 Gene3D G3DSA:3.40.50.150 2 206 4.9E-38 T 29-03-2018 AM354_RS26050 0e3881445e7152209e0dc075f8e0e1b0 215 Gene3D G3DSA:3.40.30.10 1 101 1.7E-13 T 29-03-2018 AM354_RS26050 0e3881445e7152209e0dc075f8e0e1b0 215 SUPERFAMILY SSF52833 1 87 2.13E-17 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS26050 0e3881445e7152209e0dc075f8e0e1b0 215 SUPERFAMILY SSF47616 76 212 1.21E-45 T 29-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like AM354_RS26050 0e3881445e7152209e0dc075f8e0e1b0 215 Gene3D G3DSA:1.20.1050.10 102 214 4.2E-32 T 29-03-2018 AM354_RS26050 0e3881445e7152209e0dc075f8e0e1b0 215 Pfam PF04399 Glutaredoxin 2, C terminal domain 86 213 1.0E-48 T 29-03-2018 IPR007494 Glutaredoxin 2, C-terminal AM354_RS26050 0e3881445e7152209e0dc075f8e0e1b0 215 ProSitePatterns PS00195 Glutaredoxin active site. 3 18 - T 29-03-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 AM354_RS26050 0e3881445e7152209e0dc075f8e0e1b0 215 TIGRFAM TIGR02182 GRXB: glutaredoxin, GrxB family 2 210 1.0E-88 T 29-03-2018 IPR011901 Glutaredoxin-2 GO:0005829|GO:0097573 AM354_RS26050 0e3881445e7152209e0dc075f8e0e1b0 215 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 74 3.6E-11 T 29-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AM354_RS11935 4f43b8df06e57bab5678a9e2c53abf5b 341 Gene3D G3DSA:3.20.20.30 17 334 1.5E-72 T 29-03-2018 AM354_RS11935 4f43b8df06e57bab5678a9e2c53abf5b 341 Pfam PF00296 Luciferase-like monooxygenase 30 309 4.7E-33 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AM354_RS11935 4f43b8df06e57bab5678a9e2c53abf5b 341 SUPERFAMILY SSF51679 12 332 5.54E-88 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AM354_RS11935 4f43b8df06e57bab5678a9e2c53abf5b 341 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 13 332 8.2E-139 T 29-03-2018 IPR019949 Luciferase family oxidoreductase, group 1 AM354_RS13835 ecd10c405457648f10e53830d9ac39d7 244 SMART SM00014 111 223 1.6E-25 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM354_RS13835 ecd10c405457648f10e53830d9ac39d7 244 PIRSF PIRSF000897 1 244 3.6E-96 T 29-03-2018 IPR011158 Nonspecific acid phosphatase, class A GO:0003993|GO:0030288 KEGG: 00740+3.1.3.2|MetaCyc: PWY-6348 AM354_RS13835 ecd10c405457648f10e53830d9ac39d7 244 Gene3D G3DSA:1.20.144.10 16 244 1.0E-45 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM354_RS13835 ecd10c405457648f10e53830d9ac39d7 244 PRINTS PR00483 Bacterial acid phosphatase class A signature 128 146 2.0E-54 T 29-03-2018 IPR001011 Acid phosphatase, class A, bacterial GO:0003993|GO:0030288 KEGG: 00740+3.1.3.2|MetaCyc: PWY-6348 AM354_RS13835 ecd10c405457648f10e53830d9ac39d7 244 PRINTS PR00483 Bacterial acid phosphatase class A signature 220 238 2.0E-54 T 29-03-2018 IPR001011 Acid phosphatase, class A, bacterial GO:0003993|GO:0030288 KEGG: 00740+3.1.3.2|MetaCyc: PWY-6348 AM354_RS13835 ecd10c405457648f10e53830d9ac39d7 244 PRINTS PR00483 Bacterial acid phosphatase class A signature 63 82 2.0E-54 T 29-03-2018 IPR001011 Acid phosphatase, class A, bacterial GO:0003993|GO:0030288 KEGG: 00740+3.1.3.2|MetaCyc: PWY-6348 AM354_RS13835 ecd10c405457648f10e53830d9ac39d7 244 PRINTS PR00483 Bacterial acid phosphatase class A signature 154 180 2.0E-54 T 29-03-2018 IPR001011 Acid phosphatase, class A, bacterial GO:0003993|GO:0030288 KEGG: 00740+3.1.3.2|MetaCyc: PWY-6348 AM354_RS13835 ecd10c405457648f10e53830d9ac39d7 244 PRINTS PR00483 Bacterial acid phosphatase class A signature 186 210 2.0E-54 T 29-03-2018 IPR001011 Acid phosphatase, class A, bacterial GO:0003993|GO:0030288 KEGG: 00740+3.1.3.2|MetaCyc: PWY-6348 AM354_RS13835 ecd10c405457648f10e53830d9ac39d7 244 Pfam PF01569 PAP2 superfamily 125 223 5.0E-15 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM354_RS13835 ecd10c405457648f10e53830d9ac39d7 244 SUPERFAMILY SSF48317 24 239 9.42E-43 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM354_RS13835 ecd10c405457648f10e53830d9ac39d7 244 ProSitePatterns PS01157 Class A bacterial acid phosphatases signature. 158 165 - T 29-03-2018 IPR018296 Acid phosphatase, class A, bacterial, conserved site GO:0003993|GO:0030288 KEGG: 00740+3.1.3.2|MetaCyc: PWY-6348 AM354_RS01845 df54f46dd0d0ac1339a3f198ca47f0ce 201 Gene3D G3DSA:3.40.109.10 2 201 1.4E-40 T 29-03-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AM354_RS01845 df54f46dd0d0ac1339a3f198ca47f0ce 201 SUPERFAMILY SSF55469 1 197 4.71E-49 T 29-03-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AM354_RS01845 df54f46dd0d0ac1339a3f198ca47f0ce 201 Pfam PF00881 Nitroreductase family 7 178 4.9E-31 T 29-03-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 AM354_RS10820 705152d58e96c218d55cfa935b25afbd 419 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 252 393 8.3E-7 T 29-03-2018 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 Reactome: R-HSA-156588 AM354_RS10820 705152d58e96c218d55cfa935b25afbd 419 Gene3D G3DSA:3.40.50.2000 1 243 8.2E-27 T 29-03-2018 AM354_RS10820 705152d58e96c218d55cfa935b25afbd 419 TIGRFAM TIGR01426 MGT: glycosyltransferase, MGT family 5 416 6.8E-34 T 29-03-2018 IPR006326 UDP-glycosyltransferase, MGT GO:0016758|GO:0016999 AM354_RS10820 705152d58e96c218d55cfa935b25afbd 419 SUPERFAMILY SSF53756 2 414 1.2E-64 T 29-03-2018 AM354_RS10820 705152d58e96c218d55cfa935b25afbd 419 Gene3D G3DSA:3.40.50.2000 244 402 6.3E-29 T 29-03-2018 AM354_RS10820 705152d58e96c218d55cfa935b25afbd 419 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 2 58 1.5E-8 T 29-03-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AM354_RS02245 d60a9f34f5169f4931f77aee82ffdc24 200 SUPERFAMILY SSF160519 1 194 1.31E-64 T 29-03-2018 IPR009569 Amino acid synthesis, putative AM354_RS02245 d60a9f34f5169f4931f77aee82ffdc24 200 Gene3D G3DSA:3.30.1330.110 3 191 1.9E-66 T 29-03-2018 IPR009569 Amino acid synthesis, putative AM354_RS02245 d60a9f34f5169f4931f77aee82ffdc24 200 Pfam PF06684 Amino acid synthesis 5 181 2.7E-61 T 29-03-2018 IPR009569 Amino acid synthesis, putative AM354_RS18860 7ef67ac693c1336f44c971b87b99603d 273 Gene3D G3DSA:1.10.3730.10 166 273 2.6E-32 T 29-03-2018 AM354_RS18860 7ef67ac693c1336f44c971b87b99603d 273 Gene3D G3DSA:3.40.50.720 1 165 3.9E-27 T 29-03-2018 AM354_RS18860 7ef67ac693c1336f44c971b87b99603d 273 SUPERFAMILY SSF48179 163 271 1.19E-29 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM354_RS18860 7ef67ac693c1336f44c971b87b99603d 273 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 164 269 5.8E-30 T 29-03-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 AM354_RS18860 7ef67ac693c1336f44c971b87b99603d 273 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 4 269 25.241 T 29-03-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344 AM354_RS18860 7ef67ac693c1336f44c971b87b99603d 273 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 224 247 - T 29-03-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344 AM354_RS18860 7ef67ac693c1336f44c971b87b99603d 273 PIRSF PIRSF000193 3 271 7.6E-75 T 29-03-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344 AM354_RS18860 7ef67ac693c1336f44c971b87b99603d 273 SUPERFAMILY SSF51735 4 162 1.07E-38 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS18860 7ef67ac693c1336f44c971b87b99603d 273 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 5 100 7.2E-21 T 29-03-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal AM354_RS18860 7ef67ac693c1336f44c971b87b99603d 273 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 6 269 1.2E-74 T 29-03-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344 AM354_RS13100 b90ca9ae37ac362e3466046dc6c5207c 487 Pfam PF00413 Matrixin 99 206 6.0E-9 T 29-03-2018 IPR001818 Peptidase M10, metallopeptidase GO:0004222|GO:0006508|GO:0008270|GO:0031012 AM354_RS13100 b90ca9ae37ac362e3466046dc6c5207c 487 SUPERFAMILY SSF51120 264 485 5.49E-50 T 29-03-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AM354_RS13100 b90ca9ae37ac362e3466046dc6c5207c 487 Pfam PF08548 Peptidase M10 serralysin C terminal 264 487 3.2E-84 T 29-03-2018 IPR013858 Peptidase M10 serralysin, C-terminal GO:0005509|GO:0005615 AM354_RS13100 b90ca9ae37ac362e3466046dc6c5207c 487 Gene3D G3DSA:2.150.10.10 259 487 1.2E-60 T 29-03-2018 AM354_RS13100 b90ca9ae37ac362e3466046dc6c5207c 487 PIRSF PIRSF001205 2 487 7.3E-232 T 29-03-2018 IPR016294 Peptidase M10B GO:0004222|GO:0005509|GO:0005615|GO:0006508|GO:0008270 AM354_RS13100 b90ca9ae37ac362e3466046dc6c5207c 487 PRINTS PR00313 NodO calcium binding signature 346 357 3.4E-12 T 29-03-2018 AM354_RS13100 b90ca9ae37ac362e3466046dc6c5207c 487 PRINTS PR00313 NodO calcium binding signature 367 375 3.4E-12 T 29-03-2018 AM354_RS13100 b90ca9ae37ac362e3466046dc6c5207c 487 PRINTS PR00313 NodO calcium binding signature 376 384 3.4E-12 T 29-03-2018 AM354_RS13100 b90ca9ae37ac362e3466046dc6c5207c 487 PRINTS PR00313 NodO calcium binding signature 385 394 3.4E-12 T 29-03-2018 AM354_RS13100 b90ca9ae37ac362e3466046dc6c5207c 487 Gene3D G3DSA:3.40.390.10 34 258 1.9E-41 T 29-03-2018 IPR024079 Metallopeptidase, catalytic domain GO:0008237 AM354_RS13100 b90ca9ae37ac362e3466046dc6c5207c 487 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 372 390 - T 29-03-2018 IPR018511 Hemolysin-type calcium-binding conserved site AM354_RS13100 b90ca9ae37ac362e3466046dc6c5207c 487 SUPERFAMILY SSF55486 20 262 3.31E-84 T 29-03-2018 AM354_RS13100 b90ca9ae37ac362e3466046dc6c5207c 487 SMART SM00235 72 248 3.6E-32 T 29-03-2018 IPR006026 Peptidase, metallopeptidase GO:0006508|GO:0008237|GO:0008270 AM354_RS15660 ae4fda5ffe329ced38a5e43a842cefc3 226 Gene3D G3DSA:3.40.50.1000 41 204 1.0E-22 T 29-03-2018 IPR023214 HAD-like domain AM354_RS15660 ae4fda5ffe329ced38a5e43a842cefc3 226 Gene3D G3DSA:3.40.50.1000 7 40 0.25 T 29-03-2018 IPR023214 HAD-like domain AM354_RS15660 ae4fda5ffe329ced38a5e43a842cefc3 226 Pfam PF13419 Haloacid dehalogenase-like hydrolase 13 190 2.0E-10 T 29-03-2018 IPR023214 HAD-like domain AM354_RS15660 ae4fda5ffe329ced38a5e43a842cefc3 226 SUPERFAMILY SSF56784 6 213 1.05E-42 T 29-03-2018 IPR023214 HAD-like domain AM354_RS15660 ae4fda5ffe329ced38a5e43a842cefc3 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 154 174 1.8E-7 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS15660 ae4fda5ffe329ced38a5e43a842cefc3 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 10 21 1.8E-7 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS15660 ae4fda5ffe329ced38a5e43a842cefc3 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 181 194 1.8E-7 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS15660 ae4fda5ffe329ced38a5e43a842cefc3 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 105 118 1.8E-7 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS15660 ae4fda5ffe329ced38a5e43a842cefc3 226 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 13 191 7.8E-17 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS14945 eb001b20ddb58b1206a88504a42d1af7 447 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 202 445 7.4E-86 T 29-03-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AM354_RS14945 eb001b20ddb58b1206a88504a42d1af7 447 PIRSF PIRSF000185 23 447 7.3E-115 T 29-03-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 AM354_RS14945 eb001b20ddb58b1206a88504a42d1af7 447 SMART SM00839 204 445 1.9E-92 T 29-03-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AM354_RS14945 eb001b20ddb58b1206a88504a42d1af7 447 Gene3D G3DSA:3.40.50.720 209 373 5.1E-46 T 29-03-2018 AM354_RS14945 eb001b20ddb58b1206a88504a42d1af7 447 SUPERFAMILY SSF51735 202 446 1.17E-73 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS14945 eb001b20ddb58b1206a88504a42d1af7 447 SUPERFAMILY SSF53223 7 196 2.37E-74 T 29-03-2018 AM354_RS14945 eb001b20ddb58b1206a88504a42d1af7 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 114 128 3.1E-32 T 29-03-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AM354_RS14945 eb001b20ddb58b1206a88504a42d1af7 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 372 383 3.1E-32 T 29-03-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AM354_RS14945 eb001b20ddb58b1206a88504a42d1af7 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 193 215 3.1E-32 T 29-03-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AM354_RS14945 eb001b20ddb58b1206a88504a42d1af7 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 235 255 3.1E-32 T 29-03-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AM354_RS14945 eb001b20ddb58b1206a88504a42d1af7 447 Gene3D G3DSA:3.40.50.10860 65 190 2.7E-55 T 29-03-2018 AM354_RS14945 eb001b20ddb58b1206a88504a42d1af7 447 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 57 184 2.9E-50 T 29-03-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AM354_RS14945 eb001b20ddb58b1206a88504a42d1af7 447 Gene3D G3DSA:1.10.285.10 374 447 3.2E-25 T 29-03-2018 AM354_RS14945 eb001b20ddb58b1206a88504a42d1af7 447 Gene3D G3DSA:1.10.285.10 6 64 9.6E-8 T 29-03-2018 AM354_RS14945 eb001b20ddb58b1206a88504a42d1af7 447 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 122 135 - T 29-03-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AM354_RS09545 3cabd981f20a95695d5ab48cea2c0806 196 Pfam PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP 47 193 1.0E-68 T 29-03-2018 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP KEGG: 00565+2.3.1.25 AM354_RS09545 3cabd981f20a95695d5ab48cea2c0806 196 Hamap MF_00837 Lipid A palmitoyltransferase PagP [pagP]. 3 196 45.039 T 29-03-2018 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP KEGG: 00565+2.3.1.25 AM354_RS09545 3cabd981f20a95695d5ab48cea2c0806 196 ProDom PD103779 CRCA ANTIMICROBIAL RESISTANCE LIPOPROTEIN RCP A PEPTIDE ACYLATION LIPID EXPORTED 46 184 2.0E-53 T 29-03-2018 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP KEGG: 00565+2.3.1.25 AM354_RS09545 3cabd981f20a95695d5ab48cea2c0806 196 SUPERFAMILY SSF56925 38 196 1.02E-81 T 29-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AM354_RS09545 3cabd981f20a95695d5ab48cea2c0806 196 Gene3D G3DSA:2.40.160.20 39 196 6.7E-64 T 29-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AM354_RS21170 dc20a98f848a34d87a29291671bd7ea3 474 Hamap MF_01275 Gamma-aminobutyraldehyde dehydrogenase [prr]. 1 474 73.888 T 29-03-2018 IPR017749 1-pyrroline dehydrogenase GO:0009447|GO:0019145|GO:0051287|GO:0055114 KEGG: 00330+1.2.1.19|KEGG: 00410+1.2.1.19|MetaCyc: PWY-2|MetaCyc: PWY-3 AM354_RS21170 dc20a98f848a34d87a29291671bd7ea3 474 Gene3D G3DSA:3.40.605.10 1 259 2.2E-94 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM354_RS21170 dc20a98f848a34d87a29291671bd7ea3 474 Gene3D G3DSA:3.40.309.10 260 456 5.8E-67 T 29-03-2018 AM354_RS21170 dc20a98f848a34d87a29291671bd7ea3 474 SUPERFAMILY SSF53720 3 472 3.4E-158 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM354_RS21170 dc20a98f848a34d87a29291671bd7ea3 474 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 245 252 - T 29-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AM354_RS21170 dc20a98f848a34d87a29291671bd7ea3 474 Pfam PF00171 Aldehyde dehydrogenase family 14 470 3.7E-163 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM354_RS21170 dc20a98f848a34d87a29291671bd7ea3 474 TIGRFAM TIGR03374 ABALDH: 1-pyrroline dehydrogenase 2 473 7.8E-288 T 29-03-2018 IPR017749 1-pyrroline dehydrogenase GO:0009447|GO:0019145|GO:0051287|GO:0055114 KEGG: 00330+1.2.1.19|KEGG: 00410+1.2.1.19|MetaCyc: PWY-2|MetaCyc: PWY-3 AM354_RS18950 738413d265f577bba26a927371a023ea 887 Gene3D G3DSA:3.40.50.970 472 706 4.1E-67 T 29-03-2018 AM354_RS18950 738413d265f577bba26a927371a023ea 887 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 5 886 0.0 T 29-03-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 AM354_RS18950 738413d265f577bba26a927371a023ea 887 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 361 446 3.1E-5 T 29-03-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AM354_RS18950 738413d265f577bba26a927371a023ea 887 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 118 294 2.3E-8 T 29-03-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AM354_RS18950 738413d265f577bba26a927371a023ea 887 SUPERFAMILY SSF52518 474 701 3.18E-98 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS18950 738413d265f577bba26a927371a023ea 887 Gene3D G3DSA:3.40.50.970 57 471 2.1E-84 T 29-03-2018 AM354_RS18950 738413d265f577bba26a927371a023ea 887 PIRSF PIRSF000156 1 887 0.0 T 29-03-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 AM354_RS18950 738413d265f577bba26a927371a023ea 887 Gene3D G3DSA:3.40.50.920 707 887 8.9E-41 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AM354_RS18950 738413d265f577bba26a927371a023ea 887 SUPERFAMILY SSF52922 702 885 1.04E-61 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AM354_RS18950 738413d265f577bba26a927371a023ea 887 SUPERFAMILY SSF52518 58 469 7.12E-145 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS02615 2ebe8d2997665e98ec8e135b9b59c456 180 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 58 66 - T 29-03-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AM354_RS02615 2ebe8d2997665e98ec8e135b9b59c456 180 Pfam PF01799 [2Fe-2S] binding domain 92 164 8.2E-29 T 29-03-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AM354_RS02615 2ebe8d2997665e98ec8e135b9b59c456 180 SUPERFAMILY SSF54292 24 97 9.31E-21 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM354_RS02615 2ebe8d2997665e98ec8e135b9b59c456 180 Gene3D G3DSA:3.10.20.30 17 93 4.8E-22 T 29-03-2018 IPR012675 Beta-grasp domain AM354_RS02615 2ebe8d2997665e98ec8e135b9b59c456 180 SUPERFAMILY SSF47741 103 169 1.57E-29 T 29-03-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AM354_RS02615 2ebe8d2997665e98ec8e135b9b59c456 180 Gene3D G3DSA:1.10.150.120 94 178 3.0E-32 T 29-03-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AM354_RS02615 2ebe8d2997665e98ec8e135b9b59c456 180 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 26 71 2.4E-5 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM354_RS00540 70589428296fc18d2b310800bb2e99cb 333 Gene3D G3DSA:1.10.260.40 9 61 1.0E-17 T 29-03-2018 AM354_RS00540 70589428296fc18d2b310800bb2e99cb 333 Gene3D G3DSA:3.40.50.2300 62 186 7.2E-33 T 29-03-2018 AM354_RS00540 70589428296fc18d2b310800bb2e99cb 333 Pfam PF00356 Bacterial regulatory proteins, lacI family 10 55 5.0E-9 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS00540 70589428296fc18d2b310800bb2e99cb 333 Gene3D G3DSA:3.40.50.2300 187 333 8.1E-23 T 29-03-2018 AM354_RS00540 70589428296fc18d2b310800bb2e99cb 333 SUPERFAMILY SSF47413 8 66 3.94E-14 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS00540 70589428296fc18d2b310800bb2e99cb 333 SUPERFAMILY SSF53822 66 329 3.34E-47 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS00540 70589428296fc18d2b310800bb2e99cb 333 Pfam PF13407 Periplasmic binding protein domain 69 267 3.6E-22 T 29-03-2018 IPR025997 Periplasmic binding protein AM354_RS00540 70589428296fc18d2b310800bb2e99cb 333 SMART SM00354 8 78 4.5E-18 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS03250 77f6865ed21299a1732a4e516cef4fc7 792 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 417 428 - T 29-03-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 AM354_RS03250 77f6865ed21299a1732a4e516cef4fc7 792 TIGRFAM TIGR01418 PEP_synth: phosphoenolpyruvate synthase 11 790 0.0 T 29-03-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484 AM354_RS03250 77f6865ed21299a1732a4e516cef4fc7 792 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 485 788 1.4E-59 T 29-03-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 AM354_RS03250 77f6865ed21299a1732a4e516cef4fc7 792 SUPERFAMILY SSF56059 9 388 1.41E-107 T 29-03-2018 AM354_RS03250 77f6865ed21299a1732a4e516cef4fc7 792 Gene3D G3DSA:3.20.20.60 481 792 3.7E-103 T 29-03-2018 AM354_RS03250 77f6865ed21299a1732a4e516cef4fc7 792 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 697 715 - T 29-03-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 AM354_RS03250 77f6865ed21299a1732a4e516cef4fc7 792 SUPERFAMILY SSF52009 351 469 3.14E-35 T 29-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AM354_RS03250 77f6865ed21299a1732a4e516cef4fc7 792 Pfam PF00391 PEP-utilising enzyme, mobile domain 387 458 7.3E-27 T 29-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AM354_RS03250 77f6865ed21299a1732a4e516cef4fc7 792 PIRSF PIRSF000854 7 792 0.0 T 29-03-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484 AM354_RS03250 77f6865ed21299a1732a4e516cef4fc7 792 Gene3D G3DSA:3.30.1490.20 7 198 1.4E-53 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AM354_RS03250 77f6865ed21299a1732a4e516cef4fc7 792 SUPERFAMILY SSF51621 470 788 6.28E-96 T 29-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AM354_RS03250 77f6865ed21299a1732a4e516cef4fc7 792 Gene3D G3DSA:3.50.30.10 361 478 1.4E-36 T 29-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AM354_RS03250 77f6865ed21299a1732a4e516cef4fc7 792 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 23 348 8.3E-119 T 29-03-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 AM354_RS03250 77f6865ed21299a1732a4e516cef4fc7 792 Gene3D G3DSA:3.30.470.20 199 360 7.2E-45 T 29-03-2018 AM354_RS20590 0dac702d4e094c2373162ee95da15ff2 76 Pfam PF06902 Divergent 4Fe-4S mono-cluster 13 76 1.6E-27 T 29-03-2018 IPR010693 Divergent 4Fe-4S mono-cluster AM354_RS06275 f8f3e07a5ff5e3df8d30d9d98ebacb87 458 Gene3D G3DSA:1.20.1600.10 26 449 2.7E-74 T 29-03-2018 AM354_RS06275 f8f3e07a5ff5e3df8d30d9d98ebacb87 458 Pfam PF02321 Outer membrane efflux protein 31 227 4.9E-27 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 AM354_RS06275 f8f3e07a5ff5e3df8d30d9d98ebacb87 458 Pfam PF02321 Outer membrane efflux protein 254 436 1.6E-32 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 AM354_RS06275 f8f3e07a5ff5e3df8d30d9d98ebacb87 458 SUPERFAMILY SSF56954 30 454 9.55E-90 T 29-03-2018 AM354_RS06275 f8f3e07a5ff5e3df8d30d9d98ebacb87 458 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 29 455 2.8E-118 T 29-03-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 AM354_RS18190 cc5b23b1d64104391a5a62d877a11605 149 SUPERFAMILY SSF49401 23 148 1.55E-18 T 29-03-2018 IPR008966 Adhesion domain AM354_RS18190 cc5b23b1d64104391a5a62d877a11605 149 Pfam PF00419 Fimbrial protein 15 148 1.7E-8 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS18190 cc5b23b1d64104391a5a62d877a11605 149 Gene3D G3DSA:2.60.40.1090 26 148 2.9E-9 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS17045 758b93bb955b1d193ea353e106d86135 310 Pfam PF16199 Radical_SAM C-terminal domain 208 287 5.4E-16 T 29-03-2018 IPR032432 Radical SAM, C-terminal extension Reactome: R-HSA-3214847 AM354_RS17045 758b93bb955b1d193ea353e106d86135 310 TIGRFAM TIGR01212 TIGR01212: radical SAM protein, TIGR01212 family 6 301 8.9E-127 T 29-03-2018 IPR005911 Protein YhcC-like GO:0051536 AM354_RS17045 758b93bb955b1d193ea353e106d86135 310 Pfam PF04055 Radical SAM superfamily 43 201 1.9E-16 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AM354_RS17045 758b93bb955b1d193ea353e106d86135 310 Gene3D G3DSA:3.20.20.70 2 296 2.1E-36 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS17045 758b93bb955b1d193ea353e106d86135 310 SMART SM00729 23 247 2.5E-41 T 29-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 AM354_RS17045 758b93bb955b1d193ea353e106d86135 310 SUPERFAMILY SSF102114 13 251 1.96E-44 T 29-03-2018 AM354_RS25585 d43a5bf716fae2c2b8b91375688285e6 317 SUPERFAMILY SSF53850 90 292 3.5E-41 T 29-03-2018 AM354_RS25585 d43a5bf716fae2c2b8b91375688285e6 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.5E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS25585 d43a5bf716fae2c2b8b91375688285e6 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.5E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS25585 d43a5bf716fae2c2b8b91375688285e6 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.5E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS25585 d43a5bf716fae2c2b8b91375688285e6 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 63 1.6E-12 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS25585 d43a5bf716fae2c2b8b91375688285e6 317 Gene3D G3DSA:3.40.190.10 93 179 6.1E-21 T 29-03-2018 AM354_RS25585 d43a5bf716fae2c2b8b91375688285e6 317 Gene3D G3DSA:1.10.10.10 1 92 5.9E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS25585 d43a5bf716fae2c2b8b91375688285e6 317 Gene3D G3DSA:3.40.190.10 180 267 3.6E-20 T 29-03-2018 AM354_RS25585 d43a5bf716fae2c2b8b91375688285e6 317 Pfam PF03466 LysR substrate binding domain 90 292 1.3E-42 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS25585 d43a5bf716fae2c2b8b91375688285e6 317 SUPERFAMILY SSF46785 4 113 2.57E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS04775 eac6178f3d23878db07e7612af38c2fa 156 SUPERFAMILY SSF46785 46 153 1.07E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS04775 eac6178f3d23878db07e7612af38c2fa 156 Pfam PF01325 Iron dependent repressor, N-terminal DNA binding domain 39 93 3.2E-11 T 29-03-2018 IPR022687 DTXR-type HTH domain GO:0003677 AM354_RS04775 eac6178f3d23878db07e7612af38c2fa 156 Pfam PF02742 Iron dependent repressor, metal binding and dimerisation domain 96 152 2.8E-12 T 29-03-2018 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 AM354_RS04775 eac6178f3d23878db07e7612af38c2fa 156 Gene3D G3DSA:1.10.10.10 25 95 4.5E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS04775 eac6178f3d23878db07e7612af38c2fa 156 Gene3D G3DSA:1.10.60.10 96 150 2.8E-17 T 29-03-2018 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 AM354_RS04775 eac6178f3d23878db07e7612af38c2fa 156 SMART SM00529 57 156 7.3E-31 T 29-03-2018 IPR022689 Iron dependent repressor GO:0003700|GO:0006355|GO:0046914 AM354_RS20360 4f9c4784ad9876df72004984b1cd93b1 187 Gene3D G3DSA:3.40.50.1000 4 187 1.7E-33 T 29-03-2018 IPR023214 HAD-like domain AM354_RS20360 4f9c4784ad9876df72004984b1cd93b1 187 Pfam PF13242 HAD-hyrolase-like 109 179 3.6E-13 T 29-03-2018 AM354_RS20360 4f9c4784ad9876df72004984b1cd93b1 187 SUPERFAMILY SSF56784 3 185 3.72E-54 T 29-03-2018 IPR023214 HAD-like domain AM354_RS20360 4f9c4784ad9876df72004984b1cd93b1 187 PIRSF PIRSF004682 1 187 3.5E-65 T 29-03-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 AM354_RS20360 4f9c4784ad9876df72004984b1cd93b1 187 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 6 155 5.8E-39 T 29-03-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 AM354_RS20360 4f9c4784ad9876df72004984b1cd93b1 187 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 7 156 3.6E-39 T 29-03-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 AM354_RS20360 4f9c4784ad9876df72004984b1cd93b1 187 TIGRFAM TIGR00213 GmhB_yaeD: D,D-heptose 1,7-bisphosphate phosphatase 6 180 5.4E-94 T 29-03-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 AM354_RS24180 555c720fe3d6c943e0c2bb8750225e89 306 SUPERFAMILY SSF51621 7 240 3.84E-62 T 29-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AM354_RS24180 555c720fe3d6c943e0c2bb8750225e89 306 PIRSF PIRSF015582 2 304 3.9E-78 T 29-03-2018 IPR011206 Citrate lyase beta subunit-like AM354_RS24180 555c720fe3d6c943e0c2bb8750225e89 306 TIGRFAM TIGR01588 citE: citrate (pro-3S)-lyase, beta subunit 8 294 1.2E-135 T 29-03-2018 IPR006475 Citrate lyase, beta subunit, bacteria GO:0005737|GO:0006084|GO:0008816|GO:0009346 KEGG: 00720+4.1.3.34|MetaCyc: PWY-5392|MetaCyc: PWY-6038 AM354_RS24180 555c720fe3d6c943e0c2bb8750225e89 306 Gene3D G3DSA:3.20.20.360 2 265 8.7E-51 T 29-03-2018 AM354_RS24180 555c720fe3d6c943e0c2bb8750225e89 306 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 11 230 1.9E-80 T 29-03-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 AM354_RS10325 59d0cfba2108641cce1c49aa3dd3e6e2 356 Pfam PF04389 Peptidase family M28 104 328 1.5E-32 T 29-03-2018 IPR007484 Peptidase M28 AM354_RS10325 59d0cfba2108641cce1c49aa3dd3e6e2 356 SUPERFAMILY SSF53187 45 319 2.0E-40 T 29-03-2018 AM354_RS10325 59d0cfba2108641cce1c49aa3dd3e6e2 356 Gene3D G3DSA:3.40.630.10 35 352 1.4E-43 T 29-03-2018 AM354_RS04790 6db5acb5fa0f1e1554d130a4c5001568 258 SUPERFAMILY SSF51556 1 257 9.45E-87 T 29-03-2018 IPR032466 Metal-dependent hydrolase AM354_RS04790 6db5acb5fa0f1e1554d130a4c5001568 258 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 3 256 3.3E-93 T 29-03-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 AM354_RS04790 6db5acb5fa0f1e1554d130a4c5001568 258 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 3 11 - T 29-03-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 AM354_RS04790 6db5acb5fa0f1e1554d130a4c5001568 258 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 191 207 - T 29-03-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 AM354_RS04790 6db5acb5fa0f1e1554d130a4c5001568 258 Pfam PF01026 TatD related DNase 4 255 2.5E-77 T 29-03-2018 IPR001130 TatD family GO:0016788 AM354_RS04790 6db5acb5fa0f1e1554d130a4c5001568 258 Gene3D G3DSA:3.20.20.140 1 258 2.5E-81 T 29-03-2018 AM354_RS04790 6db5acb5fa0f1e1554d130a4c5001568 258 PIRSF PIRSF005902 1 258 2.0E-75 T 29-03-2018 IPR001130 TatD family GO:0016788 AM354_RS15900 df761563ac4d4b76cc46fb54258df271 637 SUPERFAMILY SSF52540 119 256 1.43E-46 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS15900 df761563ac4d4b76cc46fb54258df271 637 SUPERFAMILY SSF52540 2 92 1.43E-46 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS15900 df761563ac4d4b76cc46fb54258df271 637 Gene3D G3DSA:3.40.50.300 308 624 2.2E-48 T 29-03-2018 AM354_RS15900 df761563ac4d4b76cc46fb54258df271 637 Pfam PF00005 ABC transporter 328 459 4.7E-23 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS15900 df761563ac4d4b76cc46fb54258df271 637 Pfam PF00005 ABC transporter 17 178 1.9E-22 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS15900 df761563ac4d4b76cc46fb54258df271 637 Gene3D G3DSA:3.40.50.300 2 279 5.8E-52 T 29-03-2018 AM354_RS15900 df761563ac4d4b76cc46fb54258df271 637 SMART SM00382 26 223 1.2E-14 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS15900 df761563ac4d4b76cc46fb54258df271 637 SMART SM00382 337 506 7.5E-12 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS15900 df761563ac4d4b76cc46fb54258df271 637 Pfam PF16326 ABC transporter C-terminal domain 562 623 2.1E-8 T 29-03-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 AM354_RS15900 df761563ac4d4b76cc46fb54258df271 637 SUPERFAMILY SSF52540 294 510 2.52E-45 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS15900 df761563ac4d4b76cc46fb54258df271 637 ProSitePatterns PS00211 ABC transporters family signature. 431 445 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS15900 df761563ac4d4b76cc46fb54258df271 637 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS15900 df761563ac4d4b76cc46fb54258df271 637 Pfam PF12848 ABC transporter 217 296 2.3E-28 T 29-03-2018 IPR032781 ABC-transporter extension domain AM354_RS22470 a5a882c32d96068cb36e9f7e899c4989 471 Gene3D G3DSA:1.10.10.350 366 471 6.0E-24 T 29-03-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AM354_RS22470 a5a882c32d96068cb36e9f7e899c4989 471 Gene3D G3DSA:3.40.50.620 3 118 1.8E-41 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS22470 a5a882c32d96068cb36e9f7e899c4989 471 Gene3D G3DSA:1.10.1160.10 232 314 1.2E-33 T 29-03-2018 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 AM354_RS22470 a5a882c32d96068cb36e9f7e899c4989 471 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 9 20 - T 29-03-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS22470 a5a882c32d96068cb36e9f7e899c4989 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 179 189 3.1E-27 T 29-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 AM354_RS22470 a5a882c32d96068cb36e9f7e899c4989 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 20 31 3.1E-27 T 29-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 AM354_RS22470 a5a882c32d96068cb36e9f7e899c4989 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 6 18 3.1E-27 T 29-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 AM354_RS22470 a5a882c32d96068cb36e9f7e899c4989 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 195 203 3.1E-27 T 29-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 AM354_RS22470 a5a882c32d96068cb36e9f7e899c4989 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 48 3.1E-27 T 29-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 AM354_RS22470 a5a882c32d96068cb36e9f7e899c4989 471 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 2 305 1.2E-116 T 29-03-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 AM354_RS22470 a5a882c32d96068cb36e9f7e899c4989 471 Gene3D G3DSA:3.40.50.620 119 231 1.2E-28 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS22470 a5a882c32d96068cb36e9f7e899c4989 471 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 2 459 6.8E-202 T 29-03-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AM354_RS22470 a5a882c32d96068cb36e9f7e899c4989 471 SUPERFAMILY SSF52374 3 298 1.21E-112 T 29-03-2018 AM354_RS22470 a5a882c32d96068cb36e9f7e899c4989 471 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 2 461 32.941 T 29-03-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AM354_RS22470 a5a882c32d96068cb36e9f7e899c4989 471 SUPERFAMILY SSF48163 299 461 2.62E-45 T 29-03-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AM354_RS22470 a5a882c32d96068cb36e9f7e899c4989 471 Gene3D G3DSA:1.10.8.70 317 361 2.6E-13 T 29-03-2018 IPR020752 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 1 GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 AM354_RS03430 7f7f5bf73459f9cd91b02e96ba69740d 377 Pfam PF01497 Periplasmic binding protein 96 319 3.2E-23 T 29-03-2018 IPR002491 ABC transporter periplasmic binding domain GO:0005488 AM354_RS03430 7f7f5bf73459f9cd91b02e96ba69740d 377 SUPERFAMILY SSF53807 30 363 5.1E-48 T 29-03-2018 AM354_RS03430 7f7f5bf73459f9cd91b02e96ba69740d 377 Gene3D G3DSA:3.40.50.1980 18 163 2.0E-19 T 29-03-2018 AM354_RS03430 7f7f5bf73459f9cd91b02e96ba69740d 377 Gene3D G3DSA:3.40.50.1980 164 349 7.1E-38 T 29-03-2018 AM354_RS01960 3d393f9c6c15b8664ee4319a1c9d2b80 1052 Gene3D G3DSA:1.20.1640.10 278 500 1.1E-50 T 29-03-2018 AM354_RS01960 3d393f9c6c15b8664ee4319a1c9d2b80 1052 Gene3D G3DSA:1.20.1640.10 827 1031 9.0E-40 T 29-03-2018 AM354_RS01960 3d393f9c6c15b8664ee4319a1c9d2b80 1052 SUPERFAMILY SSF82714 726 812 2.09E-20 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS01960 3d393f9c6c15b8664ee4319a1c9d2b80 1052 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 4 1047 0.0 T 29-03-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 AM354_RS01960 3d393f9c6c15b8664ee4319a1c9d2b80 1052 Gene3D G3DSA:3.30.70.1440 676 772 4.3E-20 T 29-03-2018 AM354_RS01960 3d393f9c6c15b8664ee4319a1c9d2b80 1052 SUPERFAMILY SSF82866 298 499 1.02E-51 T 29-03-2018 AM354_RS01960 3d393f9c6c15b8664ee4319a1c9d2b80 1052 SUPERFAMILY SSF82693 40 134 6.28E-27 T 29-03-2018 AM354_RS01960 3d393f9c6c15b8664ee4319a1c9d2b80 1052 SUPERFAMILY SSF82693 676 725 1.1E-25 T 29-03-2018 AM354_RS01960 3d393f9c6c15b8664ee4319a1c9d2b80 1052 SUPERFAMILY SSF82693 812 861 1.1E-25 T 29-03-2018 AM354_RS01960 3d393f9c6c15b8664ee4319a1c9d2b80 1052 Gene3D G3DSA:3.30.2090.10 183 277 1.3E-16 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS01960 3d393f9c6c15b8664ee4319a1c9d2b80 1052 Gene3D G3DSA:3.30.70.1430 573 672 6.7E-19 T 29-03-2018 AM354_RS01960 3d393f9c6c15b8664ee4319a1c9d2b80 1052 Pfam PF00873 AcrB/AcrD/AcrF family 4 1031 0.0 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS01960 3d393f9c6c15b8664ee4319a1c9d2b80 1052 SUPERFAMILY SSF82714 185 274 5.75E-18 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS01960 3d393f9c6c15b8664ee4319a1c9d2b80 1052 SUPERFAMILY SSF82693 569 675 6.98E-26 T 29-03-2018 AM354_RS01960 3d393f9c6c15b8664ee4319a1c9d2b80 1052 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.6E-88 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS01960 3d393f9c6c15b8664ee4319a1c9d2b80 1052 PRINTS PR00702 Acriflavin resistance protein family signature 625 639 1.6E-88 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS01960 3d393f9c6c15b8664ee4319a1c9d2b80 1052 PRINTS PR00702 Acriflavin resistance protein family signature 338 361 1.6E-88 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS01960 3d393f9c6c15b8664ee4319a1c9d2b80 1052 PRINTS PR00702 Acriflavin resistance protein family signature 471 494 1.6E-88 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS01960 3d393f9c6c15b8664ee4319a1c9d2b80 1052 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.6E-88 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS01960 3d393f9c6c15b8664ee4319a1c9d2b80 1052 PRINTS PR00702 Acriflavin resistance protein family signature 556 573 1.6E-88 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS01960 3d393f9c6c15b8664ee4319a1c9d2b80 1052 PRINTS PR00702 Acriflavin resistance protein family signature 393 417 1.6E-88 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS01960 3d393f9c6c15b8664ee4319a1c9d2b80 1052 PRINTS PR00702 Acriflavin resistance protein family signature 365 386 1.6E-88 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS01960 3d393f9c6c15b8664ee4319a1c9d2b80 1052 PRINTS PR00702 Acriflavin resistance protein family signature 446 469 1.6E-88 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS01960 3d393f9c6c15b8664ee4319a1c9d2b80 1052 SUPERFAMILY SSF82693 137 184 5.62E-27 T 29-03-2018 AM354_RS01960 3d393f9c6c15b8664ee4319a1c9d2b80 1052 SUPERFAMILY SSF82693 276 332 5.62E-27 T 29-03-2018 AM354_RS01960 3d393f9c6c15b8664ee4319a1c9d2b80 1052 Gene3D G3DSA:3.30.70.1430 40 142 2.7E-27 T 29-03-2018 AM354_RS01960 3d393f9c6c15b8664ee4319a1c9d2b80 1052 SUPERFAMILY SSF82866 835 1030 1.1E-44 T 29-03-2018 AM354_RS11705 95f887daeb27677e1e108259489352e4 535 PIRSF PIRSF000137 1 535 2.2E-146 T 29-03-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 AM354_RS11705 95f887daeb27677e1e108259489352e4 535 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 81 104 - T 29-03-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 AM354_RS11705 95f887daeb27677e1e108259489352e4 535 SUPERFAMILY SSF54373 290 475 5.49E-40 T 29-03-2018 AM354_RS11705 95f887daeb27677e1e108259489352e4 535 Pfam PF00732 GMC oxidoreductase 6 295 3.5E-86 T 29-03-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 AM354_RS11705 95f887daeb27677e1e108259489352e4 535 Gene3D G3DSA:4.10.450.10 37 102 1.3E-25 T 29-03-2018 AM354_RS11705 95f887daeb27677e1e108259489352e4 535 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 255 269 - T 29-03-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 AM354_RS11705 95f887daeb27677e1e108259489352e4 535 Pfam PF05199 GMC oxidoreductase 388 526 1.5E-36 T 29-03-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 AM354_RS11705 95f887daeb27677e1e108259489352e4 535 SUPERFAMILY SSF51905 2 288 2.3E-88 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS11705 95f887daeb27677e1e108259489352e4 535 SUPERFAMILY SSF51905 474 533 2.3E-88 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS11705 95f887daeb27677e1e108259489352e4 535 Gene3D G3DSA:3.30.560.10 103 488 1.8E-101 T 29-03-2018 AM354_RS11100 84dc6f05736796bb50c60c6bef125a34 529 Pfam PF03144 Elongation factor Tu domain 2 314 380 2.0E-11 T 29-03-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AM354_RS11100 84dc6f05736796bb50c60c6bef125a34 529 SUPERFAMILY SSF50447 262 393 4.42E-29 T 29-03-2018 IPR009000 Translation protein, beta-barrel domain AM354_RS11100 84dc6f05736796bb50c60c6bef125a34 529 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 4 527 52.529 T 29-03-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 AM354_RS11100 84dc6f05736796bb50c60c6bef125a34 529 PRINTS PR00315 GTP-binding elongation factor signature 101 112 6.6E-11 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS11100 84dc6f05736796bb50c60c6bef125a34 529 PRINTS PR00315 GTP-binding elongation factor signature 15 28 6.6E-11 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS11100 84dc6f05736796bb50c60c6bef125a34 529 PRINTS PR00315 GTP-binding elongation factor signature 137 146 6.6E-11 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS11100 84dc6f05736796bb50c60c6bef125a34 529 PRINTS PR00315 GTP-binding elongation factor signature 85 95 6.6E-11 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS11100 84dc6f05736796bb50c60c6bef125a34 529 PRINTS PR00315 GTP-binding elongation factor signature 65 73 6.6E-11 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS11100 84dc6f05736796bb50c60c6bef125a34 529 Gene3D G3DSA:3.30.70.870 394 469 1.6E-9 T 29-03-2018 AM354_RS11100 84dc6f05736796bb50c60c6bef125a34 529 Pfam PF16658 Class II release factor RF3, C-terminal domain 387 514 4.9E-46 T 29-03-2018 IPR032090 Peptide chain release factor 3, C-terminal AM354_RS11100 84dc6f05736796bb50c60c6bef125a34 529 Gene3D G3DSA:3.40.50.300 6 280 3.2E-37 T 29-03-2018 AM354_RS11100 84dc6f05736796bb50c60c6bef125a34 529 SUPERFAMILY SSF52540 10 277 2.15E-84 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS11100 84dc6f05736796bb50c60c6bef125a34 529 Gene3D G3DSA:2.40.30.10 281 387 8.4E-23 T 29-03-2018 AM354_RS11100 84dc6f05736796bb50c60c6bef125a34 529 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 5 529 0.0 T 29-03-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 AM354_RS11100 84dc6f05736796bb50c60c6bef125a34 529 SUPERFAMILY SSF54980 393 468 1.8E-16 T 29-03-2018 IPR035647 EF-G domain III/V-like AM354_RS11100 84dc6f05736796bb50c60c6bef125a34 529 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 58 73 - T 29-03-2018 IPR031157 Tr-type G domain, conserved site AM354_RS11100 84dc6f05736796bb50c60c6bef125a34 529 Pfam PF00009 Elongation factor Tu GTP binding domain 13 277 2.6E-46 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS11100 84dc6f05736796bb50c60c6bef125a34 529 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 14 153 7.7E-18 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AM354_RS01450 8dd95b4932ad07fc578ac628d9ff5228 509 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 170 195 - T 29-03-2018 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 Reactome: R-HSA-71403 AM354_RS01450 8dd95b4932ad07fc578ac628d9ff5228 509 Gene3D G3DSA:3.40.50.720 196 377 8.3E-59 T 29-03-2018 AM354_RS01450 8dd95b4932ad07fc578ac628d9ff5228 509 TIGRFAM TIGR00561 pntA: NAD(P)(+) transhydrogenase (AB-specific), alpha subunit 2 509 2.3E-291 T 29-03-2018 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0015992|GO:0055114 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 AM354_RS01450 8dd95b4932ad07fc578ac628d9ff5228 509 SUPERFAMILY SSF52283 1 168 1.62E-57 T 29-03-2018 AM354_RS01450 8dd95b4932ad07fc578ac628d9ff5228 509 SMART SM01002 146 311 4.9E-86 T 29-03-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain AM354_RS01450 8dd95b4932ad07fc578ac628d9ff5228 509 PIRSF PIRSF000203 1 508 7.3E-279 T 29-03-2018 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0015992|GO:0055114 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 AM354_RS01450 8dd95b4932ad07fc578ac628d9ff5228 509 Gene3D G3DSA:3.40.50.720 1 195 1.1E-53 T 29-03-2018 AM354_RS01450 8dd95b4932ad07fc578ac628d9ff5228 509 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 141 368 2.6E-75 T 29-03-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain AM354_RS01450 8dd95b4932ad07fc578ac628d9ff5228 509 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 426 508 5.3E-36 T 29-03-2018 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 AM354_RS01450 8dd95b4932ad07fc578ac628d9ff5228 509 SUPERFAMILY SSF51735 137 317 8.95E-38 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS01450 8dd95b4932ad07fc578ac628d9ff5228 509 ProSitePatterns PS00836 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1. 4 30 - T 29-03-2018 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 GO:0016491|GO:0055114 Reactome: R-HSA-71403 AM354_RS01450 8dd95b4932ad07fc578ac628d9ff5228 509 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 137 3.0E-52 T 29-03-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal AM354_RS01450 8dd95b4932ad07fc578ac628d9ff5228 509 SMART SM01003 4 137 1.7E-76 T 29-03-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal AM354_RS21660 4a7c73640761ee16f27b89e68b8c406e 289 SUPERFAMILY SSF55174 7 62 2.69E-13 T 29-03-2018 AM354_RS21660 4a7c73640761ee16f27b89e68b8c406e 289 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 104 118 - T 29-03-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 AM354_RS21660 4a7c73640761ee16f27b89e68b8c406e 289 Pfam PF01479 S4 domain 8 52 2.6E-10 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM354_RS21660 4a7c73640761ee16f27b89e68b8c406e 289 Gene3D G3DSA:3.30.70.1560 145 212 5.7E-23 T 29-03-2018 AM354_RS21660 4a7c73640761ee16f27b89e68b8c406e 289 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 73 226 1.6E-53 T 29-03-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 AM354_RS21660 4a7c73640761ee16f27b89e68b8c406e 289 Pfam PF00849 RNA pseudouridylate synthase 69 195 2.9E-15 T 29-03-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS21660 4a7c73640761ee16f27b89e68b8c406e 289 SUPERFAMILY SSF55120 69 229 1.65E-38 T 29-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS21660 4a7c73640761ee16f27b89e68b8c406e 289 Gene3D G3DSA:3.10.290.10 4 64 8.0E-17 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM354_RS21660 4a7c73640761ee16f27b89e68b8c406e 289 SMART SM00363 7 63 1.8E-11 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM354_RS21660 4a7c73640761ee16f27b89e68b8c406e 289 Gene3D G3DSA:3.30.70.580 65 144 5.9E-17 T 29-03-2018 AM354_RS20745 b1e67f5984967d0ca7ac30f39103edac 169 Pfam PF06892 Phage regulatory protein CII (CP76) 4 158 2.0E-54 T 29-03-2018 IPR009679 Bacteriophage 186, CII AM354_RS10425 e03f48b3c99c1a66261e451b973ef988 505 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 30 503 1.3E-122 T 29-03-2018 IPR006261 dNTP triphosphohydrolase GO:0016793 AM354_RS10425 e03f48b3c99c1a66261e451b973ef988 505 Pfam PF13286 Phosphohydrolase-associated domain 431 500 2.3E-5 T 29-03-2018 IPR026875 Phosphohydrolase-associated domain AM354_RS10425 e03f48b3c99c1a66261e451b973ef988 505 Gene3D G3DSA:1.10.3210.10 3 262 2.2E-54 T 29-03-2018 AM354_RS10425 e03f48b3c99c1a66261e451b973ef988 505 SMART SM00471 62 282 3.1E-10 T 29-03-2018 IPR003607 HD/PDEase domain AM354_RS10425 e03f48b3c99c1a66261e451b973ef988 505 Hamap MF_00030 Deoxyguanosinetriphosphate triphosphohydrolase [dgt]. 1 505 52.239 T 29-03-2018 IPR020779 dNTP triphosphohydrolase, type 1 GO:0000287|GO:0006203|GO:0008832 KEGG: 00230+3.1.5.1 AM354_RS10425 e03f48b3c99c1a66261e451b973ef988 505 Gene3D G3DSA:1.10.3410.10 263 390 1.5E-23 T 29-03-2018 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain AM354_RS10425 e03f48b3c99c1a66261e451b973ef988 505 Pfam PF01966 HD domain 66 132 1.4E-9 T 29-03-2018 IPR006674 HD domain AM354_RS10425 e03f48b3c99c1a66261e451b973ef988 505 SUPERFAMILY SSF109604 251 432 4.49E-63 T 29-03-2018 AM354_RS10425 e03f48b3c99c1a66261e451b973ef988 505 SUPERFAMILY SSF109604 24 134 4.49E-63 T 29-03-2018 AM354_RS10425 e03f48b3c99c1a66261e451b973ef988 505 SUPERFAMILY SSF109604 182 215 4.49E-63 T 29-03-2018 AM354_RS10425 e03f48b3c99c1a66261e451b973ef988 505 SUPERFAMILY SSF109604 484 502 4.49E-63 T 29-03-2018 AM354_RS10375 b2ec2f64b2b2351a0f9c057955eef4bf 397 PIRSF PIRSF001434 1 397 1.5E-144 T 29-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AM354_RS10375 b2ec2f64b2b2351a0f9c057955eef4bf 397 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 11 393 3.1E-139 T 29-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AM354_RS10375 b2ec2f64b2b2351a0f9c057955eef4bf 397 Gene3D G3DSA:3.90.1150.10 263 397 9.0E-50 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS10375 b2ec2f64b2b2351a0f9c057955eef4bf 397 SUPERFAMILY SSF53383 29 394 4.26E-123 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS10375 b2ec2f64b2b2351a0f9c057955eef4bf 397 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 202 216 - T 29-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AM354_RS10375 b2ec2f64b2b2351a0f9c057955eef4bf 397 Gene3D G3DSA:3.40.640.10 7 261 1.3E-66 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS10375 b2ec2f64b2b2351a0f9c057955eef4bf 397 TIGRFAM TIGR01328 met_gam_lyase: methionine gamma-lyase 7 395 1.1E-173 T 29-03-2018 IPR006237 L-methionine gamma-lyase GO:0018826 KEGG: 00270+4.4.1.11|KEGG: 00450+4.4.1.11|KEGG: 00920+4.4.1.2|MetaCyc: PWY-7793 AM354_RS23960 8f8db2f3ad311b29344b6a0f2c63685b 100 Pfam PF13744 Helix-turn-helix domain 12 88 1.9E-9 T 29-03-2018 AM354_RS23960 8f8db2f3ad311b29344b6a0f2c63685b 100 SUPERFAMILY SSF47413 20 96 8.04E-14 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS23960 8f8db2f3ad311b29344b6a0f2c63685b 100 Gene3D G3DSA:3.30.240.10 27 91 2.7E-8 T 29-03-2018 AM354_RS24880 d103da0250ec2c482ef9f887b8b680d1 280 PIRSF PIRSF015626 8 276 2.8E-79 T 29-03-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 AM354_RS24880 d103da0250ec2c482ef9f887b8b680d1 280 SUPERFAMILY SSF53927 20 273 1.74E-77 T 29-03-2018 IPR016193 Cytidine deaminase-like GO:0003824 AM354_RS24880 d103da0250ec2c482ef9f887b8b680d1 280 Hamap MF_00187 Sulfurtransferase FdhD [fdhD]. 15 274 32.194 T 29-03-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 AM354_RS24880 d103da0250ec2c482ef9f887b8b680d1 280 Gene3D G3DSA:3.10.20.10 40 126 1.7E-23 T 29-03-2018 AM354_RS24880 d103da0250ec2c482ef9f887b8b680d1 280 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 34 273 6.0E-87 T 29-03-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 AM354_RS24880 d103da0250ec2c482ef9f887b8b680d1 280 Pfam PF02634 FdhD/NarQ family 38 273 1.1E-70 T 29-03-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 AM354_RS24880 d103da0250ec2c482ef9f887b8b680d1 280 Gene3D G3DSA:3.40.140.10 142 278 1.3E-41 T 29-03-2018 AM354_RS10945 5d33782a2834c0360ee8d12a3f21fabc 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 232 4.3E-18 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS10945 5d33782a2834c0360ee8d12a3f21fabc 238 Pfam PF00072 Response regulator receiver domain 6 113 5.6E-27 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS10945 5d33782a2834c0360ee8d12a3f21fabc 238 SMART SM00862 156 232 1.6E-14 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS10945 5d33782a2834c0360ee8d12a3f21fabc 238 Gene3D G3DSA:3.40.50.2300 1 125 3.8E-31 T 29-03-2018 AM354_RS10945 5d33782a2834c0360ee8d12a3f21fabc 238 SUPERFAMILY SSF52172 2 127 1.2E-35 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS10945 5d33782a2834c0360ee8d12a3f21fabc 238 SMART SM00448 4 114 2.5E-38 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS10945 5d33782a2834c0360ee8d12a3f21fabc 238 Gene3D G3DSA:1.10.10.10 126 238 8.3E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS10945 5d33782a2834c0360ee8d12a3f21fabc 238 SUPERFAMILY SSF46894 137 234 2.64E-21 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS08000 d02fe102b0d586f162a0cd43dfe0fb60 632 Pfam PF00149 Calcineurin-like phosphoesterase 25 243 1.1E-12 T 29-03-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AM354_RS08000 d02fe102b0d586f162a0cd43dfe0fb60 632 Pfam PF02872 5'-nucleotidase, C-terminal domain 338 488 1.0E-20 T 29-03-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM354_RS08000 d02fe102b0d586f162a0cd43dfe0fb60 632 PRINTS PR01607 Apyrase family signature 226 249 1.9E-9 T 29-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM354_RS08000 d02fe102b0d586f162a0cd43dfe0fb60 632 PRINTS PR01607 Apyrase family signature 199 216 1.9E-9 T 29-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM354_RS08000 d02fe102b0d586f162a0cd43dfe0fb60 632 PRINTS PR01607 Apyrase family signature 22 40 1.9E-9 T 29-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM354_RS08000 d02fe102b0d586f162a0cd43dfe0fb60 632 PRINTS PR01607 Apyrase family signature 253 273 1.9E-9 T 29-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM354_RS08000 d02fe102b0d586f162a0cd43dfe0fb60 632 Gene3D G3DSA:3.90.780.10 314 553 2.9E-30 T 29-03-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM354_RS08000 d02fe102b0d586f162a0cd43dfe0fb60 632 ProSitePatterns PS00786 5'-nucleotidase signature 2. 103 114 - T 29-03-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM354_RS08000 d02fe102b0d586f162a0cd43dfe0fb60 632 SUPERFAMILY SSF56300 18 315 4.66E-75 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like AM354_RS08000 d02fe102b0d586f162a0cd43dfe0fb60 632 Gene3D G3DSA:3.60.21.10 13 313 3.1E-69 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like AM354_RS08000 d02fe102b0d586f162a0cd43dfe0fb60 632 SUPERFAMILY SSF55816 333 546 1.26E-23 T 29-03-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM354_RS07490 6bf3519f052ad00bccda7c121b6f8b03 283 Pfam PF00892 EamA-like transporter family 149 280 3.0E-12 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM354_RS07490 6bf3519f052ad00bccda7c121b6f8b03 283 Pfam PF00892 EamA-like transporter family 12 137 2.0E-8 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM354_RS07490 6bf3519f052ad00bccda7c121b6f8b03 283 SUPERFAMILY SSF103481 42 140 2.35E-7 T 29-03-2018 AM354_RS07490 6bf3519f052ad00bccda7c121b6f8b03 283 SUPERFAMILY SSF103481 190 282 2.22E-12 T 29-03-2018 AM354_RS22020 0782349d8e31f368d0a67e47d74b9ec0 153 SMART SM00344 1 110 1.6E-48 T 29-03-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AM354_RS22020 0782349d8e31f368d0a67e47d74b9ec0 153 Pfam PF13412 Winged helix-turn-helix DNA-binding 1 48 8.7E-22 T 29-03-2018 AM354_RS22020 0782349d8e31f368d0a67e47d74b9ec0 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 2.2E-19 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 AM354_RS22020 0782349d8e31f368d0a67e47d74b9ec0 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 2.2E-19 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 AM354_RS22020 0782349d8e31f368d0a67e47d74b9ec0 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 2.2E-19 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 AM354_RS22020 0782349d8e31f368d0a67e47d74b9ec0 153 ProSitePatterns PS00519 AsnC-type HTH domain signature. 19 45 - T 29-03-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site AM354_RS22020 0782349d8e31f368d0a67e47d74b9ec0 153 Gene3D G3DSA:3.30.70.920 53 138 3.6E-22 T 29-03-2018 AM354_RS22020 0782349d8e31f368d0a67e47d74b9ec0 153 SUPERFAMILY SSF46785 1 61 2.35E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS22020 0782349d8e31f368d0a67e47d74b9ec0 153 SUPERFAMILY SSF54909 61 146 3.89E-18 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel AM354_RS22020 0782349d8e31f368d0a67e47d74b9ec0 153 Pfam PF01037 Lrp/AsnC ligand binding domain 67 141 1.6E-19 T 29-03-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AM354_RS22020 0782349d8e31f368d0a67e47d74b9ec0 153 Gene3D G3DSA:1.10.10.10 1 52 2.8E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS17260 24e73b069e437006c955c3c7b400a006 613 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 403 416 - T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS17260 24e73b069e437006c955c3c7b400a006 613 Pfam PF04542 Sigma-70 region 2 379 448 1.7E-21 T 29-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS17260 24e73b069e437006c955c3c7b400a006 613 Gene3D G3DSA:1.10.601.10 3 114 1.8E-14 T 29-03-2018 AM354_RS17260 24e73b069e437006c955c3c7b400a006 613 Gene3D G3DSA:1.10.601.10 115 448 1.4E-107 T 29-03-2018 AM354_RS17260 24e73b069e437006c955c3c7b400a006 613 PRINTS PR00046 Major sigma-70 factor signature 427 435 6.3E-31 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS17260 24e73b069e437006c955c3c7b400a006 613 PRINTS PR00046 Major sigma-70 factor signature 572 587 6.3E-31 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS17260 24e73b069e437006c955c3c7b400a006 613 PRINTS PR00046 Major sigma-70 factor signature 551 563 6.3E-31 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS17260 24e73b069e437006c955c3c7b400a006 613 PRINTS PR00046 Major sigma-70 factor signature 587 598 6.3E-31 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS17260 24e73b069e437006c955c3c7b400a006 613 PRINTS PR00046 Major sigma-70 factor signature 403 416 6.3E-31 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS17260 24e73b069e437006c955c3c7b400a006 613 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 375 600 3.5E-38 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS17260 24e73b069e437006c955c3c7b400a006 613 Pfam PF04539 Sigma-70 region 3 458 533 3.5E-29 T 29-03-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS17260 24e73b069e437006c955c3c7b400a006 613 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 375 611 7.8E-121 T 29-03-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 AM354_RS17260 24e73b069e437006c955c3c7b400a006 613 Pfam PF04546 Sigma-70, non-essential region 139 348 3.3E-74 T 29-03-2018 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS17260 24e73b069e437006c955c3c7b400a006 613 SUPERFAMILY SSF88659 452 525 1.54E-20 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS17260 24e73b069e437006c955c3c7b400a006 613 SUPERFAMILY SSF88659 509 611 2.32E-25 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS17260 24e73b069e437006c955c3c7b400a006 613 Gene3D G3DSA:1.10.10.10 449 499 7.9E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS17260 24e73b069e437006c955c3c7b400a006 613 SUPERFAMILY SSF88946 115 446 3.79E-102 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS17260 24e73b069e437006c955c3c7b400a006 613 Gene3D G3DSA:1.10.10.10 542 612 6.6E-27 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS17260 24e73b069e437006c955c3c7b400a006 613 Pfam PF03979 Sigma-70 factor, region 1.1 4 81 2.4E-30 T 29-03-2018 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 AM354_RS17260 24e73b069e437006c955c3c7b400a006 613 Pfam PF00140 Sigma-70 factor, region 1.2 98 128 1.8E-12 T 29-03-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS17260 24e73b069e437006c955c3c7b400a006 613 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 4 612 46.672 T 29-03-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 AM354_RS17260 24e73b069e437006c955c3c7b400a006 613 Pfam PF04545 Sigma-70, region 4 547 600 1.0E-18 T 29-03-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS17260 24e73b069e437006c955c3c7b400a006 613 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 572 598 - T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS22275 e2138920f39c1d18ac92807fd15dbf7b 195 Pfam PF06572 Protein of unknown function (DUF1131) 22 190 6.9E-79 T 29-03-2018 IPR010938 Protein of unknown function DUF1131 AM354_RS22275 e2138920f39c1d18ac92807fd15dbf7b 195 Gene3D G3DSA:2.60.460.10 30 190 7.4E-61 T 29-03-2018 AM354_RS22275 e2138920f39c1d18ac92807fd15dbf7b 195 ProDom PD105195 LIPOPROTEIN YFEY MEMBRANE OUTER PRECURSOR SIGNAL ESCHERICHIA ECS3303 EXPORTED Y1456 16 189 4.0E-53 T 29-03-2018 IPR010938 Protein of unknown function DUF1131 AM354_RS17505 f5f61947ca360bf458b825f4cd411661 374 SUPERFAMILY SSF51395 1 374 9.42E-122 T 29-03-2018 AM354_RS17505 f5f61947ca360bf458b825f4cd411661 374 Gene3D G3DSA:3.20.20.70 5 374 3.1E-121 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS17505 f5f61947ca360bf458b825f4cd411661 374 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 5 352 2.6E-88 T 29-03-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 AM354_RS16785 f68c48bd34e97e8c492edcf4e7711299 99 SUPERFAMILY SSF52038 1 88 7.46E-28 T 29-03-2018 IPR000468 Barstar (barnase inhibitor) AM354_RS16785 f68c48bd34e97e8c492edcf4e7711299 99 Pfam PF01337 Barstar (barnase inhibitor) 6 79 4.8E-11 T 29-03-2018 IPR000468 Barstar (barnase inhibitor) AM354_RS16785 f68c48bd34e97e8c492edcf4e7711299 99 Gene3D G3DSA:3.30.370.10 1 89 3.3E-23 T 29-03-2018 IPR000468 Barstar (barnase inhibitor) AM354_RS22775 48163b8b61e78f1a3e06fdaf9dd51d8b 721 Pfam PF00378 Enoyl-CoA hydratase/isomerase 24 214 1.6E-41 T 29-03-2018 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AM354_RS22775 48163b8b61e78f1a3e06fdaf9dd51d8b 721 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 499 524 - T 29-03-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM354_RS22775 48163b8b61e78f1a3e06fdaf9dd51d8b 721 Gene3D G3DSA:3.40.50.720 263 500 3.7E-55 T 29-03-2018 AM354_RS22775 48163b8b61e78f1a3e06fdaf9dd51d8b 721 Hamap MF_01617 Fatty acid oxidation complex subunit alpha [fadJ]. 11 717 53.453 T 29-03-2018 IPR012802 Fatty oxidation complex, alpha subunit FadJ GO:0003857|GO:0004300|GO:0006635|GO:0008692|GO:0051287|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM354_RS22775 48163b8b61e78f1a3e06fdaf9dd51d8b 721 SUPERFAMILY SSF52096 16 309 2.8E-64 T 29-03-2018 IPR029045 ClpP/crotonase-like domain AM354_RS22775 48163b8b61e78f1a3e06fdaf9dd51d8b 721 Gene3D G3DSA:1.10.1040.10 501 600 4.3E-24 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM354_RS22775 48163b8b61e78f1a3e06fdaf9dd51d8b 721 Gene3D G3DSA:1.10.1040.10 625 716 8.6E-21 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM354_RS22775 48163b8b61e78f1a3e06fdaf9dd51d8b 721 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 321 499 2.4E-56 T 29-03-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM354_RS22775 48163b8b61e78f1a3e06fdaf9dd51d8b 721 SUPERFAMILY SSF48179 502 604 6.38E-29 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM354_RS22775 48163b8b61e78f1a3e06fdaf9dd51d8b 721 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 502 595 7.5E-25 T 29-03-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM354_RS22775 48163b8b61e78f1a3e06fdaf9dd51d8b 721 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 629 714 4.4E-7 T 29-03-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM354_RS22775 48163b8b61e78f1a3e06fdaf9dd51d8b 721 SUPERFAMILY SSF51735 319 500 5.62E-49 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS22775 48163b8b61e78f1a3e06fdaf9dd51d8b 721 TIGRFAM TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ 16 717 0.0 T 29-03-2018 IPR012802 Fatty oxidation complex, alpha subunit FadJ GO:0003857|GO:0004300|GO:0006635|GO:0008692|GO:0051287|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM354_RS22775 48163b8b61e78f1a3e06fdaf9dd51d8b 721 Gene3D G3DSA:3.90.226.10 2 215 7.6E-56 T 29-03-2018 AM354_RS22775 48163b8b61e78f1a3e06fdaf9dd51d8b 721 SUPERFAMILY SSF48179 625 717 1.45E-26 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM354_RS24665 92beb629efae1a0f3c45e4f783c6ad1a 401 SUPERFAMILY SSF53901 4 276 6.8E-76 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS24665 92beb629efae1a0f3c45e4f783c6ad1a 401 SUPERFAMILY SSF53901 277 400 4.32E-44 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS24665 92beb629efae1a0f3c45e4f783c6ad1a 401 TIGRFAM TIGR02430 pcaF: 3-oxoadipyl-CoA thiolase 3 401 1.9E-212 T 29-03-2018 IPR012793 Beta-ketoadipyl CoA thiolase GO:0016747|GO:0019619 KEGG: 00250+2.3.1.17|KEGG: 00360+2.3.1.174|KEGG: 00362+2.3.1.174|MetaCyc: PWY-1361|MetaCyc: PWY-2361|MetaCyc: PWY-6185 AM354_RS24665 92beb629efae1a0f3c45e4f783c6ad1a 401 ProSitePatterns PS00737 Thiolases signature 2. 347 363 - T 29-03-2018 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 AM354_RS24665 92beb629efae1a0f3c45e4f783c6ad1a 401 Pfam PF00108 Thiolase, N-terminal domain 5 268 6.8E-74 T 29-03-2018 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 AM354_RS24665 92beb629efae1a0f3c45e4f783c6ad1a 401 Gene3D G3DSA:3.40.47.10 272 398 8.5E-33 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS24665 92beb629efae1a0f3c45e4f783c6ad1a 401 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 86 104 - T 29-03-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 AM354_RS24665 92beb629efae1a0f3c45e4f783c6ad1a 401 ProSitePatterns PS00099 Thiolases active site. 382 395 - T 29-03-2018 IPR020610 Thiolase, active site GO:0008152|GO:0016747 AM354_RS24665 92beb629efae1a0f3c45e4f783c6ad1a 401 PIRSF PIRSF000429 1 401 1.1E-125 T 29-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 AM354_RS24665 92beb629efae1a0f3c45e4f783c6ad1a 401 Gene3D G3DSA:3.40.47.10 158 271 7.0E-23 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS24665 92beb629efae1a0f3c45e4f783c6ad1a 401 Gene3D G3DSA:3.40.47.10 1 157 1.8E-26 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS24665 92beb629efae1a0f3c45e4f783c6ad1a 401 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 399 2.9E-133 T 29-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 AM354_RS24665 92beb629efae1a0f3c45e4f783c6ad1a 401 Pfam PF02803 Thiolase, C-terminal domain 277 400 1.8E-44 T 29-03-2018 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 AM354_RS20240 2d3d9a50767c1cfd3166fa7517dfd2a5 382 Gene3D G3DSA:3.40.50.2000 1 183 1.3E-4 T 29-03-2018 AM354_RS20240 2d3d9a50767c1cfd3166fa7517dfd2a5 382 Pfam PF02684 Lipid-A-disaccharide synthetase 8 376 3.4E-145 T 29-03-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622 AM354_RS20240 2d3d9a50767c1cfd3166fa7517dfd2a5 382 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 5 381 43.221 T 29-03-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622 AM354_RS20240 2d3d9a50767c1cfd3166fa7517dfd2a5 382 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 3 379 4.9E-173 T 29-03-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622 AM354_RS20240 2d3d9a50767c1cfd3166fa7517dfd2a5 382 Gene3D G3DSA:3.40.50.2000 184 365 3.7E-12 T 29-03-2018 AM354_RS20240 2d3d9a50767c1cfd3166fa7517dfd2a5 382 SUPERFAMILY SSF53756 8 305 2.09E-26 T 29-03-2018 AM354_RS17745 f3e792773f7c86602458363e7c5514dc 181 Gene3D G3DSA:1.10.1740.10 5 66 2.4E-16 T 29-03-2018 AM354_RS17745 f3e792773f7c86602458363e7c5514dc 181 Pfam PF04542 Sigma-70 region 2 15 80 3.8E-13 T 29-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS17745 f3e792773f7c86602458363e7c5514dc 181 Gene3D G3DSA:1.10.10.10 67 173 3.8E-5 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS17745 f3e792773f7c86602458363e7c5514dc 181 SUPERFAMILY SSF88946 12 93 4.32E-17 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS17745 f3e792773f7c86602458363e7c5514dc 181 Pfam PF08281 Sigma-70, region 4 105 156 3.6E-6 T 29-03-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS17745 f3e792773f7c86602458363e7c5514dc 181 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 14 159 1.1E-17 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS17745 f3e792773f7c86602458363e7c5514dc 181 SUPERFAMILY SSF88659 102 160 2.24E-7 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS24060 d4a6dd9b34677b41932cc65e79b2b1f9 460 Pfam PF08548 Peptidase M10 serralysin C terminal 236 460 1.5E-73 T 29-03-2018 IPR013858 Peptidase M10 serralysin, C-terminal GO:0005509|GO:0005615 AM354_RS24060 d4a6dd9b34677b41932cc65e79b2b1f9 460 Pfam PF00413 Matrixin 55 196 6.2E-11 T 29-03-2018 IPR001818 Peptidase M10, metallopeptidase GO:0004222|GO:0006508|GO:0008270|GO:0031012 AM354_RS24060 d4a6dd9b34677b41932cc65e79b2b1f9 460 Gene3D G3DSA:2.150.10.10 231 460 1.1E-53 T 29-03-2018 AM354_RS24060 d4a6dd9b34677b41932cc65e79b2b1f9 460 SUPERFAMILY SSF55486 9 234 1.02E-51 T 29-03-2018 AM354_RS24060 d4a6dd9b34677b41932cc65e79b2b1f9 460 PRINTS PR00313 NodO calcium binding signature 357 366 3.9E-9 T 29-03-2018 AM354_RS24060 d4a6dd9b34677b41932cc65e79b2b1f9 460 PRINTS PR00313 NodO calcium binding signature 318 329 3.9E-9 T 29-03-2018 AM354_RS24060 d4a6dd9b34677b41932cc65e79b2b1f9 460 PRINTS PR00313 NodO calcium binding signature 339 347 3.9E-9 T 29-03-2018 AM354_RS24060 d4a6dd9b34677b41932cc65e79b2b1f9 460 PRINTS PR00313 NodO calcium binding signature 348 356 3.9E-9 T 29-03-2018 AM354_RS24060 d4a6dd9b34677b41932cc65e79b2b1f9 460 Gene3D G3DSA:3.40.390.10 17 230 2.4E-32 T 29-03-2018 IPR024079 Metallopeptidase, catalytic domain GO:0008237 AM354_RS24060 d4a6dd9b34677b41932cc65e79b2b1f9 460 PIRSF PIRSF001205 1 460 2.5E-175 T 29-03-2018 IPR016294 Peptidase M10B GO:0004222|GO:0005509|GO:0005615|GO:0006508|GO:0008270 AM354_RS24060 d4a6dd9b34677b41932cc65e79b2b1f9 460 SMART SM00235 47 216 5.5E-13 T 29-03-2018 IPR006026 Peptidase, metallopeptidase GO:0006508|GO:0008237|GO:0008270 AM354_RS24060 d4a6dd9b34677b41932cc65e79b2b1f9 460 SUPERFAMILY SSF51120 238 457 5.36E-44 T 29-03-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AM354_RS20635 016f72bb43a8a93401e898af9db926d4 116 Pfam PF02656 Domain of unknown function (DUF202) 9 68 1.3E-11 T 29-03-2018 IPR003807 Domain of unknown function DUF202 AM354_RS14605 43fcd829171a440f3f25d1517b492169 386 Gene3D G3DSA:3.40.640.10 1 247 1.0E-55 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS14605 43fcd829171a440f3f25d1517b492169 386 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 6 381 2.1E-141 T 29-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AM354_RS14605 43fcd829171a440f3f25d1517b492169 386 PIRSF PIRSF001434 1 384 2.3E-135 T 29-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AM354_RS14605 43fcd829171a440f3f25d1517b492169 386 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 190 204 - T 29-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AM354_RS14605 43fcd829171a440f3f25d1517b492169 386 Gene3D G3DSA:3.90.1150.10 248 386 7.2E-52 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS14605 43fcd829171a440f3f25d1517b492169 386 SUPERFAMILY SSF53383 9 381 3.94E-120 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS14605 43fcd829171a440f3f25d1517b492169 386 TIGRFAM TIGR02080 O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase 3 382 3.8E-206 T 29-03-2018 IPR011821 O-succinylhomoserine (thiol)-lyase KEGG: 00270+2.5.1.48|KEGG: 00450+2.5.1.48|KEGG: 00920+2.5.1.48|MetaCyc: PWY-801 AM354_RS24220 f97cf37723328dd275bb7a0b541c7dad 230 SUPERFAMILY SSF56214 115 198 3.01E-14 T 29-03-2018 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 AM354_RS24220 f97cf37723328dd275bb7a0b541c7dad 230 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 115 196 2.8E-11 T 29-03-2018 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 AM354_RS24220 f97cf37723328dd275bb7a0b541c7dad 230 Gene3D G3DSA:3.90.470.20 124 204 1.5E-7 T 29-03-2018 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 AM354_RS24220 f97cf37723328dd275bb7a0b541c7dad 230 PRINTS PR01399 Enterobactin synthetase component D signature 81 99 2.5E-15 T 29-03-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 AM354_RS24220 f97cf37723328dd275bb7a0b541c7dad 230 PRINTS PR01399 Enterobactin synthetase component D signature 158 174 2.5E-15 T 29-03-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 AM354_RS24220 f97cf37723328dd275bb7a0b541c7dad 230 PRINTS PR01399 Enterobactin synthetase component D signature 51 71 2.5E-15 T 29-03-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 AM354_RS24220 f97cf37723328dd275bb7a0b541c7dad 230 Gene3D G3DSA:3.90.470.20 40 123 4.9E-13 T 29-03-2018 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 AM354_RS11905 6785e8563fe1349e212f9ce1f1c94acc 173 Pfam PF02036 SCP-2 sterol transfer family 43 133 4.6E-19 T 29-03-2018 IPR003033 SCP2 sterol-binding domain AM354_RS11905 6785e8563fe1349e212f9ce1f1c94acc 173 PIRSF PIRSF025550 1 173 1.5E-81 T 29-03-2018 IPR016830 Uncharacterised conserved protein UCP025550, lipid carrier protein, YhbT AM354_RS11905 6785e8563fe1349e212f9ce1f1c94acc 173 Gene3D G3DSA:3.30.1050.10 20 140 1.5E-17 T 29-03-2018 IPR003033 SCP2 sterol-binding domain AM354_RS11905 6785e8563fe1349e212f9ce1f1c94acc 173 SUPERFAMILY SSF55718 42 137 4.0E-22 T 29-03-2018 IPR003033 SCP2 sterol-binding domain AM354_RS03520 13ab20c164c6b32a9845d440de00dae9 367 Hamap MF_01376 2-aminoethylphosphonate--pyruvate transaminase [phnW]. 1 367 200.084 T 29-03-2018 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 AM354_RS03520 13ab20c164c6b32a9845d440de00dae9 367 Gene3D G3DSA:3.90.1150.10 256 366 1.0E-31 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS03520 13ab20c164c6b32a9845d440de00dae9 367 TIGRFAM TIGR03301 PhnW-AepZ: 2-aminoethylphosphonate aminotransferase 7 363 1.1E-152 T 29-03-2018 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 AM354_RS03520 13ab20c164c6b32a9845d440de00dae9 367 PIRSF PIRSF000524 1 366 7.9E-57 T 29-03-2018 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661 AM354_RS03520 13ab20c164c6b32a9845d440de00dae9 367 SUPERFAMILY SSF53383 6 363 5.47E-84 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS03520 13ab20c164c6b32a9845d440de00dae9 367 Gene3D G3DSA:3.40.640.10 17 255 1.3E-35 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS03520 13ab20c164c6b32a9845d440de00dae9 367 Pfam PF00266 Aminotransferase class-V 41 317 1.7E-25 T 29-03-2018 IPR000192 Aminotransferase class V domain AM354_RS03520 13ab20c164c6b32a9845d440de00dae9 367 TIGRFAM TIGR02326 transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase 4 365 2.6E-187 T 29-03-2018 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 AM354_RS02100 2c1d84f7cbe9e42308471df2bd702cf7 888 Gene3D G3DSA:2.40.40.20 541 697 9.1E-34 T 29-03-2018 AM354_RS02100 2c1d84f7cbe9e42308471df2bd702cf7 888 Pfam PF01568 Molydopterin dinucleotide binding domain 583 691 1.3E-21 T 29-03-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 AM354_RS02100 2c1d84f7cbe9e42308471df2bd702cf7 888 Pfam PF00384 Molybdopterin oxidoreductase 70 482 9.6E-87 T 29-03-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS02100 2c1d84f7cbe9e42308471df2bd702cf7 888 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 7 55 9.8E-17 T 29-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS02100 2c1d84f7cbe9e42308471df2bd702cf7 888 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 10 28 - T 29-03-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 KEGG: 00910+1.7.99.4 AM354_RS02100 2c1d84f7cbe9e42308471df2bd702cf7 888 Gene3D G3DSA:3.40.50.740 253 540 3.5E-75 T 29-03-2018 AM354_RS02100 2c1d84f7cbe9e42308471df2bd702cf7 888 Pfam PF04324 BFD-like [2Fe-2S] binding domain 828 875 4.6E-11 T 29-03-2018 IPR007419 BFD-like [2Fe-2S]-binding domain AM354_RS02100 2c1d84f7cbe9e42308471df2bd702cf7 888 Gene3D G3DSA:3.40.228.10 161 252 3.3E-25 T 29-03-2018 AM354_RS02100 2c1d84f7cbe9e42308471df2bd702cf7 888 PIRSF PIRSF036643 1 708 9.3E-144 T 29-03-2018 AM354_RS02100 2c1d84f7cbe9e42308471df2bd702cf7 888 SUPERFAMILY SSF50692 573 713 2.94E-37 T 29-03-2018 IPR009010 Aspartate decarboxylase-like domain AM354_RS02100 2c1d84f7cbe9e42308471df2bd702cf7 888 SUPERFAMILY SSF53706 7 585 1.44E-184 T 29-03-2018 AM354_RS02100 2c1d84f7cbe9e42308471df2bd702cf7 888 Gene3D G3DSA:2.20.25.90 2 57 2.4E-15 T 29-03-2018 AM354_RS02100 2c1d84f7cbe9e42308471df2bd702cf7 888 Gene3D G3DSA:3.40.50.740 61 160 3.4E-20 T 29-03-2018 AM354_RS02100 2c1d84f7cbe9e42308471df2bd702cf7 888 SMART SM00926 5 58 4.8E-14 T 29-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS25370 2014a264b7f36b00b3c93c02a10f8a28 319 TIGRFAM TIGR02550 flagell_flgL: flagellar hook-associated protein 3 2 193 3.0E-63 T 29-03-2018 IPR013384 Flagellar hook-associated protein 3 GO:0009424|GO:0071973 AM354_RS25370 2014a264b7f36b00b3c93c02a10f8a28 319 SUPERFAMILY SSF64518 1 316 3.92E-56 T 29-03-2018 AM354_RS25370 2014a264b7f36b00b3c93c02a10f8a28 319 Gene3D G3DSA:1.20.1330.10 38 292 1.2E-23 T 29-03-2018 AM354_RS25370 2014a264b7f36b00b3c93c02a10f8a28 319 Pfam PF00669 Bacterial flagellin N-terminal helical region 3 138 7.8E-24 T 29-03-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 AM354_RS10180 0c88bb68c3e3a624594cf61e621bd57f 162 Pfam PF02464 Competence-damaged protein 10 158 3.2E-57 T 29-03-2018 IPR008136 CinA, C-terminal AM354_RS10180 0c88bb68c3e3a624594cf61e621bd57f 162 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 14 156 1.8E-55 T 29-03-2018 IPR008136 CinA, C-terminal AM354_RS10180 0c88bb68c3e3a624594cf61e621bd57f 162 Gene3D G3DSA:3.90.950.20 1 161 4.8E-59 T 29-03-2018 AM354_RS10180 0c88bb68c3e3a624594cf61e621bd57f 162 SUPERFAMILY SSF142433 6 159 3.92E-55 T 29-03-2018 IPR008136 CinA, C-terminal AM354_RS05215 9cbf5cd09f115d55f1127a420d253f0f 509 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 423 497 6.1E-9 T 29-03-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM354_RS05215 9cbf5cd09f115d55f1127a420d253f0f 509 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 191 285 1.0E-22 T 29-03-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM354_RS05215 9cbf5cd09f115d55f1127a420d253f0f 509 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 11 187 3.0E-54 T 29-03-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM354_RS05215 9cbf5cd09f115d55f1127a420d253f0f 509 Gene3D G3DSA:3.40.50.720 1 189 3.3E-46 T 29-03-2018 AM354_RS05215 9cbf5cd09f115d55f1127a420d253f0f 509 Gene3D G3DSA:1.10.1040.10 419 504 1.7E-10 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM354_RS05215 9cbf5cd09f115d55f1127a420d253f0f 509 Gene3D G3DSA:1.10.1040.10 190 293 4.2E-23 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM354_RS05215 9cbf5cd09f115d55f1127a420d253f0f 509 SUPERFAMILY SSF48179 417 497 5.53E-11 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM354_RS05215 9cbf5cd09f115d55f1127a420d253f0f 509 SUPERFAMILY SSF51735 8 190 1.49E-46 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS05215 9cbf5cd09f115d55f1127a420d253f0f 509 SUPERFAMILY SSF48179 190 298 7.91E-23 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM354_RS26140 3bbe6fc94050cb6cec0b616db4b4659e 382 Gene3D G3DSA:3.90.120.10 198 354 9.9E-9 T 29-03-2018 AM354_RS26140 3bbe6fc94050cb6cec0b616db4b4659e 382 Pfam PF00145 C-5 cytosine-specific DNA methylase 3 367 3.6E-45 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS26140 3bbe6fc94050cb6cec0b616db4b4659e 382 TIGRFAM TIGR00675 dcm: DNA (cytosine-5-)-methyltransferase 5 366 8.7E-44 T 29-03-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 AM354_RS26140 3bbe6fc94050cb6cec0b616db4b4659e 382 SUPERFAMILY SSF53335 3 367 6.65E-71 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS26140 3bbe6fc94050cb6cec0b616db4b4659e 382 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 109 123 1.6E-7 T 29-03-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 AM354_RS26140 3bbe6fc94050cb6cec0b616db4b4659e 382 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 3 19 1.6E-7 T 29-03-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 AM354_RS26140 3bbe6fc94050cb6cec0b616db4b4659e 382 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 154 167 1.6E-7 T 29-03-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 AM354_RS26140 3bbe6fc94050cb6cec0b616db4b4659e 382 Gene3D G3DSA:3.40.50.150 2 196 2.1E-39 T 29-03-2018 AM354_RS16125 4157208684c94686d88d743bda4a1b43 206 Gene3D G3DSA:3.10.290.10 102 144 3.5E-15 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM354_RS16125 4157208684c94686d88d743bda4a1b43 206 Gene3D G3DSA:1.10.1050.10 145 206 8.0E-18 T 29-03-2018 AM354_RS16125 4157208684c94686d88d743bda4a1b43 206 Pfam PF01479 S4 domain 97 143 2.3E-18 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM354_RS16125 4157208684c94686d88d743bda4a1b43 206 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 206 36.412 T 29-03-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 AM354_RS16125 4157208684c94686d88d743bda4a1b43 206 SMART SM00363 96 160 5.3E-20 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM354_RS16125 4157208684c94686d88d743bda4a1b43 206 Gene3D G3DSA:1.10.1050.10 1 101 4.5E-42 T 29-03-2018 AM354_RS16125 4157208684c94686d88d743bda4a1b43 206 SUPERFAMILY SSF55174 3 206 8.9E-73 T 29-03-2018 AM354_RS16125 4157208684c94686d88d743bda4a1b43 206 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 206 7.2E-87 T 29-03-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 AM354_RS16125 4157208684c94686d88d743bda4a1b43 206 ProSitePatterns PS00632 Ribosomal protein S4 signature. 94 118 - T 29-03-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16125 4157208684c94686d88d743bda4a1b43 206 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 95 9.8E-33 T 29-03-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 AM354_RS16125 4157208684c94686d88d743bda4a1b43 206 SMART SM01390 3 95 3.8E-50 T 29-03-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 AM354_RS03990 1afd573d4d88db4cde3bdd63e6fd87e5 81 SUPERFAMILY SSF64210 16 69 6.02E-17 T 29-03-2018 IPR004174 Head-to-tail joining protein W GO:0019058 AM354_RS03990 1afd573d4d88db4cde3bdd63e6fd87e5 81 ProDom PD019366 PROPHAGE HEAD JOINING GP3 COMPLETION HEAD-TO-TAIL W PROPHAGE-DERIVED DNA HEAD-TAIL 36 78 6.0E-10 T 29-03-2018 IPR004174 Head-to-tail joining protein W GO:0019058 AM354_RS03990 1afd573d4d88db4cde3bdd63e6fd87e5 81 Pfam PF02831 gpW 17 79 1.5E-24 T 29-03-2018 IPR004174 Head-to-tail joining protein W GO:0019058 AM354_RS03990 1afd573d4d88db4cde3bdd63e6fd87e5 81 Gene3D G3DSA:3.30.1580.10 16 78 2.6E-24 T 29-03-2018 AM354_RS20020 e2c06649d5ff570450ca448230e0b353 1123 TIGRFAM TIGR01450 recC: exodeoxyribonuclease V, gamma subunit 2 1088 0.0 T 29-03-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 AM354_RS20020 e2c06649d5ff570450ca448230e0b353 1123 SUPERFAMILY SSF52540 360 811 3.29E-107 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS20020 e2c06649d5ff570450ca448230e0b353 1123 Gene3D G3DSA:1.10.486.10 442 650 5.2E-71 T 29-03-2018 AM354_RS20020 e2c06649d5ff570450ca448230e0b353 1123 SUPERFAMILY SSF52980 819 1120 6.43E-97 T 29-03-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AM354_RS20020 e2c06649d5ff570450ca448230e0b353 1123 PIRSF PIRSF000980 1 1122 0.0 T 29-03-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 AM354_RS20020 e2c06649d5ff570450ca448230e0b353 1123 SUPERFAMILY SSF52540 1 347 4.3E-129 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS20020 e2c06649d5ff570450ca448230e0b353 1123 Hamap MF_01486 RecBCD enzyme subunit RecC [recC]. 1 1113 21.296 T 29-03-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 AM354_RS20020 e2c06649d5ff570450ca448230e0b353 1123 Pfam PF04257 Exodeoxyribonuclease V, gamma subunit 1 807 0.0 T 29-03-2018 AM354_RS20020 e2c06649d5ff570450ca448230e0b353 1123 Gene3D G3DSA:1.10.10.160 86 185 2.7E-32 T 29-03-2018 AM354_RS17460 9bd87edcecb4d54cfcfc65fa9bc2830f 244 Gene3D G3DSA:1.10.10.10 10 84 2.5E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS17460 9bd87edcecb4d54cfcfc65fa9bc2830f 244 SUPERFAMILY SSF64288 71 242 6.28E-40 T 29-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AM354_RS17460 9bd87edcecb4d54cfcfc65fa9bc2830f 244 Gene3D G3DSA:3.40.1410.10 85 243 9.7E-36 T 29-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AM354_RS17460 9bd87edcecb4d54cfcfc65fa9bc2830f 244 SMART SM00866 103 239 7.9E-32 T 29-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AM354_RS17460 9bd87edcecb4d54cfcfc65fa9bc2830f 244 SMART SM00345 24 83 7.3E-16 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS17460 9bd87edcecb4d54cfcfc65fa9bc2830f 244 Pfam PF00392 Bacterial regulatory proteins, gntR family 22 83 5.6E-14 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS17460 9bd87edcecb4d54cfcfc65fa9bc2830f 244 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 57 73 5.1E-8 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS17460 9bd87edcecb4d54cfcfc65fa9bc2830f 244 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 43 57 5.1E-8 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS17460 9bd87edcecb4d54cfcfc65fa9bc2830f 244 SUPERFAMILY SSF46785 19 84 9.36E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS17460 9bd87edcecb4d54cfcfc65fa9bc2830f 244 Pfam PF07702 UTRA domain 105 238 3.3E-31 T 29-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AM354_RS05125 cb318edfe4336085bc78577e338086a8 610 Pfam PF14520 Helix-hairpin-helix domain 561 609 1.3E-7 T 29-03-2018 AM354_RS05125 cb318edfe4336085bc78577e338086a8 610 Pfam PF02151 UvrB/uvrC motif 205 237 1.8E-9 T 29-03-2018 IPR001943 UVR domain GO:0005515 AM354_RS05125 cb318edfe4336085bc78577e338086a8 610 Gene3D G3DSA:3.40.1440.10 4 101 4.0E-24 T 29-03-2018 IPR000305 GIY-YIG nuclease superfamily AM354_RS05125 cb318edfe4336085bc78577e338086a8 610 SUPERFAMILY SSF82771 17 100 1.83E-24 T 29-03-2018 IPR000305 GIY-YIG nuclease superfamily AM354_RS05125 cb318edfe4336085bc78577e338086a8 610 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 385 542 1.2E-45 T 29-03-2018 IPR001162 UvrC family homology region AM354_RS05125 cb318edfe4336085bc78577e338086a8 610 Gene3D G3DSA:1.10.150.20 554 610 1.2E-11 T 29-03-2018 AM354_RS05125 cb318edfe4336085bc78577e338086a8 610 Gene3D G3DSA:4.10.860.10 182 240 8.3E-16 T 29-03-2018 IPR001943 UVR domain GO:0005515 AM354_RS05125 cb318edfe4336085bc78577e338086a8 610 SMART SM00465 17 98 8.1E-23 T 29-03-2018 IPR000305 GIY-YIG nuclease superfamily AM354_RS05125 cb318edfe4336085bc78577e338086a8 610 SUPERFAMILY SSF46600 190 243 3.66E-13 T 29-03-2018 IPR001943 UVR domain GO:0005515 AM354_RS05125 cb318edfe4336085bc78577e338086a8 610 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 9 589 6.7E-230 T 29-03-2018 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 AM354_RS05125 cb318edfe4336085bc78577e338086a8 610 SUPERFAMILY SSF47781 521 609 7.94E-18 T 29-03-2018 IPR010994 RuvA domain 2-like AM354_RS05125 cb318edfe4336085bc78577e338086a8 610 Pfam PF01541 GIY-YIG catalytic domain 18 93 1.6E-12 T 29-03-2018 IPR000305 GIY-YIG nuclease superfamily AM354_RS05125 cb318edfe4336085bc78577e338086a8 610 SMART SM00278 588 607 0.093 T 29-03-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AM354_RS05125 cb318edfe4336085bc78577e338086a8 610 SMART SM00278 556 575 15.0 T 29-03-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AM354_RS05125 cb318edfe4336085bc78577e338086a8 610 Hamap MF_00203 UvrABC system protein C [uvrC]. 4 607 30.061 T 29-03-2018 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 AM354_RS07440 37672eff19dc72a2dcc01403e68b5ba7 367 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 4 351 43.183 T 29-03-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS07440 37672eff19dc72a2dcc01403e68b5ba7 367 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 107 118 - T 29-03-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS07440 37672eff19dc72a2dcc01403e68b5ba7 367 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 5 350 1.1E-113 T 29-03-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS07440 37672eff19dc72a2dcc01403e68b5ba7 367 SUPERFAMILY SSF52440 3 139 9.59E-36 T 29-03-2018 IPR016185 Pre-ATP-grasp domain AM354_RS07440 37672eff19dc72a2dcc01403e68b5ba7 367 Gene3D G3DSA:3.40.50.20 1 150 1.6E-44 T 29-03-2018 AM354_RS07440 37672eff19dc72a2dcc01403e68b5ba7 367 PIRSF PIRSF039102 1 359 1.1E-133 T 29-03-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS07440 37672eff19dc72a2dcc01403e68b5ba7 367 SUPERFAMILY SSF56059 140 357 1.56E-62 T 29-03-2018 AM354_RS07440 37672eff19dc72a2dcc01403e68b5ba7 367 Gene3D G3DSA:3.30.1490.20 155 213 3.0E-20 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AM354_RS07440 37672eff19dc72a2dcc01403e68b5ba7 367 Pfam PF01820 D-ala D-ala ligase N-terminus 5 129 1.1E-29 T 29-03-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS07440 37672eff19dc72a2dcc01403e68b5ba7 367 Pfam PF07478 D-ala D-ala ligase C-terminus 147 348 1.9E-79 T 29-03-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS07440 37672eff19dc72a2dcc01403e68b5ba7 367 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 293 321 - T 29-03-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS07440 37672eff19dc72a2dcc01403e68b5ba7 367 Gene3D G3DSA:3.30.470.20 214 360 1.8E-44 T 29-03-2018 AM354_RS14090 cdb482e04351c637f94d000e21d29cd9 308 Hamap MF_01987 Ribokinase [rbsK]. 4 303 26.282 T 29-03-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 AM354_RS14090 cdb482e04351c637f94d000e21d29cd9 308 SUPERFAMILY SSF53613 5 304 8.57E-85 T 29-03-2018 IPR029056 Ribokinase-like AM354_RS14090 cdb482e04351c637f94d000e21d29cd9 308 TIGRFAM TIGR02152 D_ribokin_bact: ribokinase 7 301 2.1E-111 T 29-03-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 AM354_RS14090 cdb482e04351c637f94d000e21d29cd9 308 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 248 261 - T 29-03-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AM354_RS14090 cdb482e04351c637f94d000e21d29cd9 308 PRINTS PR00990 Ribokinase signature 175 190 4.1E-36 T 29-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AM354_RS14090 cdb482e04351c637f94d000e21d29cd9 308 PRINTS PR00990 Ribokinase signature 8 29 4.1E-36 T 29-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AM354_RS14090 cdb482e04351c637f94d000e21d29cd9 308 PRINTS PR00990 Ribokinase signature 219 230 4.1E-36 T 29-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AM354_RS14090 cdb482e04351c637f94d000e21d29cd9 308 PRINTS PR00990 Ribokinase signature 107 120 4.1E-36 T 29-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AM354_RS14090 cdb482e04351c637f94d000e21d29cd9 308 PRINTS PR00990 Ribokinase signature 35 54 4.1E-36 T 29-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AM354_RS14090 cdb482e04351c637f94d000e21d29cd9 308 Gene3D G3DSA:3.40.1190.20 1 308 2.6E-85 T 29-03-2018 IPR029056 Ribokinase-like AM354_RS14090 cdb482e04351c637f94d000e21d29cd9 308 Pfam PF00294 pfkB family carbohydrate kinase 5 296 3.1E-75 T 29-03-2018 IPR011611 Carbohydrate kinase PfkB AM354_RS24535 a809dc3cfe3da18abcea5936d034059a 163 Gene3D G3DSA:2.60.40.1090 26 163 5.3E-13 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS24535 a809dc3cfe3da18abcea5936d034059a 163 SUPERFAMILY SSF49401 37 163 9.94E-22 T 29-03-2018 IPR008966 Adhesion domain AM354_RS24535 a809dc3cfe3da18abcea5936d034059a 163 Pfam PF00419 Fimbrial protein 29 163 6.7E-14 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS08500 80ae402b52395dbd037e66b054e7d353 365 Gene3D G3DSA:3.90.180.10 5 176 1.8E-40 T 29-03-2018 AM354_RS08500 80ae402b52395dbd037e66b054e7d353 365 Pfam PF00107 Zinc-binding dehydrogenase 196 313 1.3E-27 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AM354_RS08500 80ae402b52395dbd037e66b054e7d353 365 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 60 74 - T 29-03-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AM354_RS08500 80ae402b52395dbd037e66b054e7d353 365 Gene3D G3DSA:3.40.50.10730 177 308 6.0E-29 T 29-03-2018 AM354_RS08500 80ae402b52395dbd037e66b054e7d353 365 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 153 4.7E-26 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AM354_RS08500 80ae402b52395dbd037e66b054e7d353 365 SUPERFAMILY SSF51735 159 331 3.64E-39 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS08500 80ae402b52395dbd037e66b054e7d353 365 SMART SM00829 13 363 2.2E-7 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AM354_RS08500 80ae402b52395dbd037e66b054e7d353 365 SUPERFAMILY SSF50129 5 191 1.83E-55 T 29-03-2018 IPR011032 GroES-like AM354_RS05715 e9eecb9b3fb335d9f49f2bf36f230a6a 383 Pfam PF07690 Major Facilitator Superfamily 11 317 7.4E-25 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS05715 e9eecb9b3fb335d9f49f2bf36f230a6a 383 Gene3D G3DSA:1.20.1250.20 194 380 7.6E-21 T 29-03-2018 AM354_RS05715 e9eecb9b3fb335d9f49f2bf36f230a6a 383 Gene3D G3DSA:1.20.1250.20 3 191 1.3E-19 T 29-03-2018 AM354_RS05715 e9eecb9b3fb335d9f49f2bf36f230a6a 383 Hamap MF_01149 Uncharacterized MFS-type transporter YcaD [ycaD]. 1 383 35.885 T 29-03-2018 IPR023745 MSF-type transporter, YcaD AM354_RS05715 e9eecb9b3fb335d9f49f2bf36f230a6a 383 SUPERFAMILY SSF103473 6 371 2.09E-45 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS08310 6f3a971f517310869809e77f9eb7a4b7 224 SUPERFAMILY SSF161098 14 209 3.01E-39 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS08310 6f3a971f517310869809e77f9eb7a4b7 224 Gene3D G3DSA:1.10.3720.10 2 224 6.7E-41 T 29-03-2018 AM354_RS08310 6f3a971f517310869809e77f9eb7a4b7 224 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 118 1.1E-24 T 29-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 AM354_RS08310 6f3a971f517310869809e77f9eb7a4b7 224 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 223 2.3E-18 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS02040 0e3889ee76f2a2723adcbd5cc9a16519 433 Gene3D G3DSA:2.120.10.30 320 433 2.0E-15 T 29-03-2018 IPR011042 Six-bladed beta-propeller, TolB-like AM354_RS02040 0e3889ee76f2a2723adcbd5cc9a16519 433 Gene3D G3DSA:2.120.10.30 53 319 3.5E-35 T 29-03-2018 IPR011042 Six-bladed beta-propeller, TolB-like AM354_RS02040 0e3889ee76f2a2723adcbd5cc9a16519 433 SUPERFAMILY SSF50952 124 431 3.01E-34 T 29-03-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 AM354_RS02040 0e3889ee76f2a2723adcbd5cc9a16519 433 SUPERFAMILY SSF50952 63 95 3.01E-34 T 29-03-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 AM354_RS02040 0e3889ee76f2a2723adcbd5cc9a16519 433 Pfam PF07995 Glucose / Sorbosone dehydrogenase 169 358 1.4E-14 T 29-03-2018 IPR012938 Glucose/Sorbosone dehydrogenase AM354_RS20805 f9f119cae1ed8159ce3453ede6719ab6 234 Pfam PF05944 Phage small terminase subunit 37 165 1.7E-42 T 29-03-2018 IPR010270 Bacteriophage P2, GpM GO:0003677|GO:0004519|GO:0019069 AM354_RS04295 3c7480995d8b6a520dfca454d677b307 400 Pfam PF02687 FtsX-like permease family 297 393 2.0E-13 T 29-03-2018 IPR003838 ABC transporter permease protein domain GO:0016020 AM354_RS04295 3c7480995d8b6a520dfca454d677b307 400 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 4 400 6.9E-143 T 29-03-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 AM354_RS04295 3c7480995d8b6a520dfca454d677b307 400 Gene3D G3DSA:1.20.1250.20 14 389 0.0022 T 29-03-2018 AM354_RS04295 3c7480995d8b6a520dfca454d677b307 400 Pfam PF12704 MacB-like periplasmic core domain 27 208 1.1E-12 T 29-03-2018 IPR025857 MacB-like periplasmic core domain AM354_RS00410 fc64ef926a34e943a64d27977f229afd 337 Gene3D G3DSA:3.40.50.2300 5 294 3.2E-35 T 29-03-2018 AM354_RS00410 fc64ef926a34e943a64d27977f229afd 337 Pfam PF00072 Response regulator receiver domain 10 120 6.7E-26 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS00410 fc64ef926a34e943a64d27977f229afd 337 Hamap MF_00958 Regulator of RpoS [rssB]. 1 337 55.805 T 29-03-2018 IPR028616 Regulator of RpoS AM354_RS00410 fc64ef926a34e943a64d27977f229afd 337 SUPERFAMILY SSF52172 7 133 1.02E-32 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS00410 fc64ef926a34e943a64d27977f229afd 337 SMART SM00448 8 120 5.1E-30 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS18350 a2a77f2c8d7bf9a4e91603d099be67c3 115 Pfam PF09686 Plasmid protein of unknown function (Plasmid_RAQPRD) 31 110 4.0E-31 T 29-03-2018 IPR019110 Uncharacterised protein family, RAQPRD AM354_RS18350 a2a77f2c8d7bf9a4e91603d099be67c3 115 TIGRFAM TIGR01690 ICE_RAQPRD: integrative conjugative element protein, RAQPRD family 20 112 3.4E-32 T 29-03-2018 IPR019110 Uncharacterised protein family, RAQPRD AM354_RS09130 654c0a3c39b4554e177d4cfda59ce1c0 296 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 56 78 - T 29-03-2018 IPR030470 UbiA prenyltransferase conserved site AM354_RS09130 654c0a3c39b4554e177d4cfda59ce1c0 296 Pfam PF01040 UbiA prenyltransferase family 18 266 1.2E-60 T 29-03-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 AM354_RS09130 654c0a3c39b4554e177d4cfda59ce1c0 296 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 3 281 2.5E-92 T 29-03-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 AM354_RS09130 654c0a3c39b4554e177d4cfda59ce1c0 296 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 1 283 18.223 T 29-03-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 AM354_RS23205 78cd76a448f6ad02a5521848f329912f 327 Pfam PF00356 Bacterial regulatory proteins, lacI family 7 48 2.8E-16 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS23205 78cd76a448f6ad02a5521848f329912f 327 SUPERFAMILY SSF47413 5 49 1.61E-10 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS23205 78cd76a448f6ad02a5521848f329912f 327 Gene3D G3DSA:1.10.10.60 3 18 0.036 T 29-03-2018 AM354_RS23205 78cd76a448f6ad02a5521848f329912f 327 Gene3D G3DSA:3.40.50.2300 59 168 5.6E-25 T 29-03-2018 AM354_RS23205 78cd76a448f6ad02a5521848f329912f 327 SMART SM00354 5 72 2.9E-15 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS23205 78cd76a448f6ad02a5521848f329912f 327 Pfam PF13377 Periplasmic binding protein-like domain 170 326 2.1E-26 T 29-03-2018 AM354_RS23205 78cd76a448f6ad02a5521848f329912f 327 SUPERFAMILY SSF53822 62 321 1.05E-52 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS23205 78cd76a448f6ad02a5521848f329912f 327 Gene3D G3DSA:1.10.260.40 19 58 5.4E-15 T 29-03-2018 AM354_RS23205 78cd76a448f6ad02a5521848f329912f 327 Gene3D G3DSA:3.40.50.2300 169 327 7.8E-37 T 29-03-2018 AM354_RS23205 78cd76a448f6ad02a5521848f329912f 327 ProSitePatterns PS00356 LacI-type HTH domain signature. 8 26 - T 29-03-2018 AM354_RS12060 b6ed011193bcc549bbae27e1225c4894 353 SMART SM00304 83 135 0.0091 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM354_RS12060 b6ed011193bcc549bbae27e1225c4894 353 Gene3D G3DSA:1.10.287.130 126 192 1.2E-9 T 29-03-2018 AM354_RS12060 b6ed011193bcc549bbae27e1225c4894 353 SUPERFAMILY SSF47384 120 194 1.45E-12 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS12060 b6ed011193bcc549bbae27e1225c4894 353 SMART SM00388 136 196 7.5E-11 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS12060 b6ed011193bcc549bbae27e1225c4894 353 Gene3D G3DSA:1.20.5.1040 2 83 0.0043 T 29-03-2018 AM354_RS12060 b6ed011193bcc549bbae27e1225c4894 353 Gene3D G3DSA:3.30.565.10 203 353 5.1E-32 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS12060 b6ed011193bcc549bbae27e1225c4894 353 PRINTS PR00344 Bacterial sensor protein C-terminal signature 279 293 6.8E-8 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS12060 b6ed011193bcc549bbae27e1225c4894 353 PRINTS PR00344 Bacterial sensor protein C-terminal signature 310 328 6.8E-8 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS12060 b6ed011193bcc549bbae27e1225c4894 353 SUPERFAMILY SSF55874 186 348 4.32E-33 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS12060 b6ed011193bcc549bbae27e1225c4894 353 Pfam PF00512 His Kinase A (phospho-acceptor) domain 138 194 3.5E-10 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS12060 b6ed011193bcc549bbae27e1225c4894 353 SMART SM00387 242 351 1.3E-26 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS12060 b6ed011193bcc549bbae27e1225c4894 353 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 242 349 4.5E-18 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS11225 d21541e84e8a4689aec039d0f225ef81 520 Pfam PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal 15 281 6.1E-93 T 29-03-2018 IPR024674 HpaB/PvcC/4-BUDH N-terminal AM354_RS11225 d21541e84e8a4689aec039d0f225ef81 520 PIRSF PIRSF000331 11 501 1.1E-196 T 29-03-2018 IPR004925 HpaB/PvcC/4-BUDH AM354_RS11225 d21541e84e8a4689aec039d0f225ef81 520 Gene3D G3DSA:2.40.110.10 152 283 1.6E-12 T 29-03-2018 AM354_RS11225 d21541e84e8a4689aec039d0f225ef81 520 Pfam PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal 288 489 2.3E-64 T 29-03-2018 IPR024719 HpaB/PvcC/4-BUDH C-terminal AM354_RS11225 d21541e84e8a4689aec039d0f225ef81 520 TIGRFAM TIGR02310 HpaB-2: 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component 2 520 0.0 T 29-03-2018 IPR012688 4-HPA 3-monooxygenase large component, gammaproteobacteria GO:0010124|GO:0016712|GO:0050660 AM354_RS11225 d21541e84e8a4689aec039d0f225ef81 520 Gene3D G3DSA:1.20.140.10 292 494 8.1E-66 T 29-03-2018 AM354_RS11225 d21541e84e8a4689aec039d0f225ef81 520 SUPERFAMILY SSF56645 13 282 1.02E-81 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AM354_RS11225 d21541e84e8a4689aec039d0f225ef81 520 SUPERFAMILY SSF47203 272 493 4.18E-45 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AM354_RS11225 d21541e84e8a4689aec039d0f225ef81 520 Gene3D G3DSA:1.10.3140.10 14 151 2.3E-49 T 29-03-2018 AM354_RS11225 d21541e84e8a4689aec039d0f225ef81 520 PIRSF PIRSF500125 1 518 5.1E-282 T 29-03-2018 IPR024677 4-HPA 3-monooxygenase large component/Pyoverdin chromophore biosynthetic protein AM354_RS15560 99bba2d59741425926590e78ae388374 801 SUPERFAMILY SSF53756 6 799 5.18E-295 T 29-03-2018 AM354_RS15560 99bba2d59741425926590e78ae388374 801 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 14 798 0.0 T 29-03-2018 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 AM354_RS15560 99bba2d59741425926590e78ae388374 801 Pfam PF00343 Carbohydrate phosphorylase 94 798 0.0 T 29-03-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 AM354_RS15560 99bba2d59741425926590e78ae388374 801 PIRSF PIRSF000460 2 801 4.8E-208 T 29-03-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 AM354_RS15560 99bba2d59741425926590e78ae388374 801 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 643 655 - T 29-03-2018 IPR035090 Phosphorylase pyridoxal-phosphate attachment site KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 AM354_RS15560 99bba2d59741425926590e78ae388374 801 Gene3D G3DSA:3.40.50.2000 468 784 5.5E-132 T 29-03-2018 AM354_RS15560 99bba2d59741425926590e78ae388374 801 Gene3D G3DSA:3.40.50.2000 2 467 3.3E-171 T 29-03-2018 AM354_RS21355 c5138162c64b0e589abc442582deb90f 458 Gene3D G3DSA:3.40.50.261 121 387 5.4E-5 T 29-03-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AM354_RS21355 c5138162c64b0e589abc442582deb90f 458 Gene3D G3DSA:2.40.50.140 12 105 6.4E-7 T 29-03-2018 AM354_RS21355 c5138162c64b0e589abc442582deb90f 458 Pfam PF13742 OB-fold nucleic acid binding domain 10 103 1.6E-32 T 29-03-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 AM354_RS21355 c5138162c64b0e589abc442582deb90f 458 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 7 443 30.528 T 29-03-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 AM354_RS21355 c5138162c64b0e589abc442582deb90f 458 Pfam PF02601 Exonuclease VII, large subunit 126 440 2.6E-101 T 29-03-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 AM354_RS21355 c5138162c64b0e589abc442582deb90f 458 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 11 358 2.7E-138 T 29-03-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 AM354_RS12460 a800ad2739ec10175862223aebe7f3be 548 SUPERFAMILY SSF52029 185 376 4.19E-82 T 29-03-2018 IPR027409 GroEL-like apical domain AM354_RS12460 a800ad2739ec10175862223aebe7f3be 548 Gene3D G3DSA:3.50.7.10 186 373 1.9E-96 T 29-03-2018 IPR027409 GroEL-like apical domain AM354_RS12460 a800ad2739ec10175862223aebe7f3be 548 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 526 4.1E-255 T 29-03-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AM354_RS12460 a800ad2739ec10175862223aebe7f3be 548 PRINTS PR00298 60kDa chaperonin signature 83 110 2.5E-74 T 29-03-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AM354_RS12460 a800ad2739ec10175862223aebe7f3be 548 PRINTS PR00298 60kDa chaperonin signature 350 375 2.5E-74 T 29-03-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AM354_RS12460 a800ad2739ec10175862223aebe7f3be 548 PRINTS PR00298 60kDa chaperonin signature 27 53 2.5E-74 T 29-03-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AM354_RS12460 a800ad2739ec10175862223aebe7f3be 548 PRINTS PR00298 60kDa chaperonin signature 398 419 2.5E-74 T 29-03-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AM354_RS12460 a800ad2739ec10175862223aebe7f3be 548 PRINTS PR00298 60kDa chaperonin signature 268 291 2.5E-74 T 29-03-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AM354_RS12460 a800ad2739ec10175862223aebe7f3be 548 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 523 5.5E-93 T 29-03-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 AM354_RS12460 a800ad2739ec10175862223aebe7f3be 548 SUPERFAMILY SSF54849 137 203 9.39E-25 T 29-03-2018 AM354_RS12460 a800ad2739ec10175862223aebe7f3be 548 Gene3D G3DSA:1.10.560.10 374 516 9.2E-24 T 29-03-2018 IPR027413 GroEL-like equatorial domain AM354_RS12460 a800ad2739ec10175862223aebe7f3be 548 SUPERFAMILY SSF48592 406 521 9.16E-77 T 29-03-2018 AM354_RS12460 a800ad2739ec10175862223aebe7f3be 548 SUPERFAMILY SSF48592 7 134 9.16E-77 T 29-03-2018 AM354_RS12460 a800ad2739ec10175862223aebe7f3be 548 Gene3D G3DSA:1.10.560.10 1 185 1.3E-43 T 29-03-2018 IPR027413 GroEL-like equatorial domain AM354_RS12460 a800ad2739ec10175862223aebe7f3be 548 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 29-03-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AM354_RS12460 a800ad2739ec10175862223aebe7f3be 548 Hamap MF_00600 60 kDa chaperonin [groL]. 2 547 41.567 T 29-03-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AM354_RS21935 bf64a6a60bc7f551960408c6ba0ebfc2 120 Gene3D G3DSA:1.10.3510.10 3 120 2.2E-32 T 29-03-2018 IPR023138 NMB0513-like domain AM354_RS21935 bf64a6a60bc7f551960408c6ba0ebfc2 120 Pfam PF04591 Protein of unknown function, DUF596 54 120 1.3E-22 T 29-03-2018 IPR007670 Protein of unknown function DUF596 AM354_RS21935 bf64a6a60bc7f551960408c6ba0ebfc2 120 SUPERFAMILY SSF160472 4 120 8.5E-35 T 29-03-2018 IPR023138 NMB0513-like domain AM354_RS05570 badb901295d4b140299441a1ceea6c99 396 PRINTS PR00799 Aspartate aminotransferase signature 341 359 8.1E-40 T 29-03-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 AM354_RS05570 badb901295d4b140299441a1ceea6c99 396 PRINTS PR00799 Aspartate aminotransferase signature 175 194 8.1E-40 T 29-03-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 AM354_RS05570 badb901295d4b140299441a1ceea6c99 396 PRINTS PR00799 Aspartate aminotransferase signature 273 298 8.1E-40 T 29-03-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 AM354_RS05570 badb901295d4b140299441a1ceea6c99 396 PRINTS PR00799 Aspartate aminotransferase signature 206 218 8.1E-40 T 29-03-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 AM354_RS05570 badb901295d4b140299441a1ceea6c99 396 Gene3D G3DSA:3.90.1150.10 306 396 4.3E-25 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS05570 badb901295d4b140299441a1ceea6c99 396 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 243 256 - T 29-03-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 AM354_RS05570 badb901295d4b140299441a1ceea6c99 396 Pfam PF00155 Aminotransferase class I and II 27 392 2.0E-91 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM354_RS05570 badb901295d4b140299441a1ceea6c99 396 Gene3D G3DSA:3.40.640.10 86 305 1.3E-30 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS05570 badb901295d4b140299441a1ceea6c99 396 SUPERFAMILY SSF53383 1 396 2.74E-119 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS05570 badb901295d4b140299441a1ceea6c99 396 Gene3D G3DSA:3.90.1150.10 1 85 1.2E-20 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS21370 8c6efaa026480804152051c5fb10df13 525 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 7 525 56.29 T 29-03-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 AM354_RS21370 8c6efaa026480804152051c5fb10df13 525 SUPERFAMILY SSF52402 197 420 8.6E-58 T 29-03-2018 AM354_RS21370 8c6efaa026480804152051c5fb10df13 525 SUPERFAMILY SSF54810 405 525 2.09E-51 T 29-03-2018 AM354_RS21370 8c6efaa026480804152051c5fb10df13 525 Pfam PF00958 GMP synthase C terminal domain 433 524 8.6E-44 T 29-03-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 AM354_RS21370 8c6efaa026480804152051c5fb10df13 525 PRINTS PR00097 Anthranilate synthase component II signature 54 63 1.4E-6 T 29-03-2018 AM354_RS21370 8c6efaa026480804152051c5fb10df13 525 PRINTS PR00097 Anthranilate synthase component II signature 177 190 1.4E-6 T 29-03-2018 AM354_RS21370 8c6efaa026480804152051c5fb10df13 525 PRINTS PR00097 Anthranilate synthase component II signature 81 92 1.4E-6 T 29-03-2018 AM354_RS21370 8c6efaa026480804152051c5fb10df13 525 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 81 97 5.1E-6 T 29-03-2018 AM354_RS21370 8c6efaa026480804152051c5fb10df13 525 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 51 65 5.1E-6 T 29-03-2018 AM354_RS21370 8c6efaa026480804152051c5fb10df13 525 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 10 24 5.1E-6 T 29-03-2018 AM354_RS21370 8c6efaa026480804152051c5fb10df13 525 Pfam PF02540 NAD synthase 216 281 1.1E-6 T 29-03-2018 IPR022310 NAD/GMP synthase AM354_RS21370 8c6efaa026480804152051c5fb10df13 525 SUPERFAMILY SSF52317 4 204 1.39E-56 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS21370 8c6efaa026480804152051c5fb10df13 525 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 10 205 1.0E-83 T 29-03-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 AM354_RS21370 8c6efaa026480804152051c5fb10df13 525 PRINTS PR00096 Glutamine amidotransferase superfamily signature 177 190 1.2E-7 T 29-03-2018 AM354_RS21370 8c6efaa026480804152051c5fb10df13 525 PRINTS PR00096 Glutamine amidotransferase superfamily signature 81 92 1.2E-7 T 29-03-2018 AM354_RS21370 8c6efaa026480804152051c5fb10df13 525 PRINTS PR00096 Glutamine amidotransferase superfamily signature 54 63 1.2E-7 T 29-03-2018 AM354_RS21370 8c6efaa026480804152051c5fb10df13 525 Gene3D G3DSA:3.40.50.620 223 400 2.3E-36 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS21370 8c6efaa026480804152051c5fb10df13 525 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 213 525 2.3E-155 T 29-03-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 AM354_RS21370 8c6efaa026480804152051c5fb10df13 525 Gene3D G3DSA:3.30.300.10 401 525 6.3E-53 T 29-03-2018 AM354_RS21370 8c6efaa026480804152051c5fb10df13 525 Gene3D G3DSA:3.40.50.880 5 222 3.2E-47 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS21370 8c6efaa026480804152051c5fb10df13 525 Pfam PF00117 Glutamine amidotransferase class-I 12 200 4.8E-40 T 29-03-2018 IPR017926 Glutamine amidotransferase AM354_RS00435 c04f45e20fcdfbf674c7ee82b62fd4a3 194 ProSitePatterns PS00603 Thymidine kinase cellular-type signature. 173 186 - T 29-03-2018 IPR020633 Thymidine kinase, conserved site GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 AM354_RS00435 c04f45e20fcdfbf674c7ee82b62fd4a3 194 SUPERFAMILY SSF57716 142 191 1.33E-17 T 29-03-2018 AM354_RS00435 c04f45e20fcdfbf674c7ee82b62fd4a3 194 Pfam PF00265 Thymidine kinase 2 186 8.3E-62 T 29-03-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 AM354_RS00435 c04f45e20fcdfbf674c7ee82b62fd4a3 194 Gene3D G3DSA:3.30.60.20 142 193 1.3E-18 T 29-03-2018 AM354_RS00435 c04f45e20fcdfbf674c7ee82b62fd4a3 194 PIRSF PIRSF035805 1 193 7.0E-58 T 29-03-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 AM354_RS00435 c04f45e20fcdfbf674c7ee82b62fd4a3 194 Gene3D G3DSA:3.40.50.300 2 141 1.4E-43 T 29-03-2018 AM354_RS00435 c04f45e20fcdfbf674c7ee82b62fd4a3 194 SUPERFAMILY SSF52540 1 141 8.15E-39 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS00435 c04f45e20fcdfbf674c7ee82b62fd4a3 194 Hamap MF_00124 Thymidine kinase [tdk]. 1 189 35.395 T 29-03-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 AM354_RS02080 74f456da28941a05e295313c7e4efe69 307 Gene3D G3DSA:3.40.50.2300 133 307 6.2E-38 T 29-03-2018 AM354_RS02080 74f456da28941a05e295313c7e4efe69 307 SUPERFAMILY SSF53822 22 301 1.73E-72 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS02080 74f456da28941a05e295313c7e4efe69 307 Gene3D G3DSA:3.40.50.2300 25 132 3.1E-20 T 29-03-2018 AM354_RS02080 74f456da28941a05e295313c7e4efe69 307 Pfam PF13407 Periplasmic binding protein domain 26 279 2.3E-56 T 29-03-2018 IPR025997 Periplasmic binding protein AM354_RS08760 2f0b3297d77715a0392ea5ab3891e4d5 406 Gene3D G3DSA:1.20.1250.20 15 205 1.4E-20 T 29-03-2018 AM354_RS08760 2f0b3297d77715a0392ea5ab3891e4d5 406 Pfam PF07690 Major Facilitator Superfamily 30 362 2.1E-37 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS08760 2f0b3297d77715a0392ea5ab3891e4d5 406 SUPERFAMILY SSF103473 18 404 2.09E-57 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS08760 2f0b3297d77715a0392ea5ab3891e4d5 406 Gene3D G3DSA:1.20.1250.20 206 405 2.1E-24 T 29-03-2018 AM354_RS11785 1b22a620f68784ded12094f3f5b75441 712 SUPERFAMILY SSF51998 121 687 3.05E-194 T 29-03-2018 AM354_RS11785 1b22a620f68784ded12094f3f5b75441 712 Gene3D G3DSA:3.20.70.20 121 687 2.4E-204 T 29-03-2018 AM354_RS11785 1b22a620f68784ded12094f3f5b75441 712 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 116 705 1.8E-180 T 29-03-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.17.4.2|KEGG: 00240+1.17.4.2 AM354_RS11785 1b22a620f68784ded12094f3f5b75441 712 Pfam PF03477 ATP cone domain 4 89 3.2E-20 T 29-03-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 AM354_RS11785 1b22a620f68784ded12094f3f5b75441 712 ProSitePatterns PS00850 Glycine radical domain signature. 676 684 - T 29-03-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site AM354_RS11785 1b22a620f68784ded12094f3f5b75441 712 TIGRFAM TIGR02487 NrdD: anaerobic ribonucleoside-triphosphate reductase 115 705 8.6E-203 T 29-03-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.17.4.2|KEGG: 00240+1.17.4.2 AM354_RS16025 3cba96a2416f781cc6a27b130af8c072 92 PIRSF PIRSF002144 1 92 4.4E-31 T 29-03-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16025 3cba96a2416f781cc6a27b130af8c072 92 Gene3D G3DSA:3.30.860.10 1 92 6.0E-40 T 29-03-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16025 3cba96a2416f781cc6a27b130af8c072 92 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 91 1.6E-45 T 29-03-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 AM354_RS16025 3cba96a2416f781cc6a27b130af8c072 92 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 29-03-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16025 3cba96a2416f781cc6a27b130af8c072 92 SUPERFAMILY SSF54570 3 84 6.02E-35 T 29-03-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16025 3cba96a2416f781cc6a27b130af8c072 92 Pfam PF00203 Ribosomal protein S19 3 83 2.2E-35 T 29-03-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16025 3cba96a2416f781cc6a27b130af8c072 92 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 25.439 T 29-03-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16025 3cba96a2416f781cc6a27b130af8c072 92 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 1.1E-24 T 29-03-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16025 3cba96a2416f781cc6a27b130af8c072 92 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 1.1E-24 T 29-03-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16025 3cba96a2416f781cc6a27b130af8c072 92 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 1.1E-24 T 29-03-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16970 44bc005334d49b0bd5a9c4d0437f9029 84 PIRSF PIRSF003113 1 83 1.0E-23 T 29-03-2018 IPR002634 BolA protein AM354_RS16970 44bc005334d49b0bd5a9c4d0437f9029 84 SUPERFAMILY SSF82657 1 82 2.35E-30 T 29-03-2018 IPR002634 BolA protein AM354_RS16970 44bc005334d49b0bd5a9c4d0437f9029 84 Pfam PF01722 BolA-like protein 19 74 1.9E-15 T 29-03-2018 IPR002634 BolA protein AM354_RS16970 44bc005334d49b0bd5a9c4d0437f9029 84 Gene3D G3DSA:3.30.300.90 1 83 1.4E-26 T 29-03-2018 AM354_RS10115 b3c81f78b062dd88a665ba6e89f1eee0 171 Pfam PF02664 S-Ribosylhomocysteinase (LuxS) 4 151 1.1E-61 T 29-03-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 AM354_RS10115 b3c81f78b062dd88a665ba6e89f1eee0 171 PIRSF PIRSF006160 1 162 3.5E-65 T 29-03-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 AM354_RS10115 b3c81f78b062dd88a665ba6e89f1eee0 171 SUPERFAMILY SSF63411 4 162 1.28E-66 T 29-03-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AM354_RS10115 b3c81f78b062dd88a665ba6e89f1eee0 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 77 95 4.9E-49 T 29-03-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 AM354_RS10115 b3c81f78b062dd88a665ba6e89f1eee0 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 49 67 4.9E-49 T 29-03-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 AM354_RS10115 b3c81f78b062dd88a665ba6e89f1eee0 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 28 46 4.9E-49 T 29-03-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 AM354_RS10115 b3c81f78b062dd88a665ba6e89f1eee0 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 121 140 4.9E-49 T 29-03-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 AM354_RS10115 b3c81f78b062dd88a665ba6e89f1eee0 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 5 23 4.9E-49 T 29-03-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 AM354_RS10115 b3c81f78b062dd88a665ba6e89f1eee0 171 Hamap MF_00091 S-ribosylhomocysteine lyase [luxS]. 1 159 35.389 T 29-03-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 AM354_RS10115 b3c81f78b062dd88a665ba6e89f1eee0 171 Gene3D G3DSA:3.30.1360.80 3 161 5.4E-64 T 29-03-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 AM354_RS10115 b3c81f78b062dd88a665ba6e89f1eee0 171 ProDom PD013172 LYASE SYNTHESIS LUXS AUTOINDUCER-2 PRODUCTION AUTOINDUCER S-RIBOSYLHOMOCYSTEINE AI-2 QUORUM SENSING 9 148 3.0E-80 T 29-03-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 AM354_RS00825 25a5a0c5247ab622a22a70cf6bc9f551 396 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 7 388 8.6E-191 T 29-03-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AM354_RS00825 25a5a0c5247ab622a22a70cf6bc9f551 396 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 51 373 5.4E-51 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM354_RS00825 25a5a0c5247ab622a22a70cf6bc9f551 396 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 79 93 - T 29-03-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AM354_RS00825 25a5a0c5247ab622a22a70cf6bc9f551 396 Gene3D G3DSA:3.40.50.1100 194 396 7.2E-38 T 29-03-2018 AM354_RS00825 25a5a0c5247ab622a22a70cf6bc9f551 396 PIRSF PIRSF001413 1 396 1.2E-171 T 29-03-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AM354_RS00825 25a5a0c5247ab622a22a70cf6bc9f551 396 SUPERFAMILY SSF53686 4 389 4.06E-144 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM354_RS00825 25a5a0c5247ab622a22a70cf6bc9f551 396 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 1 390 49.882 T 29-03-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AM354_RS00825 25a5a0c5247ab622a22a70cf6bc9f551 396 Gene3D G3DSA:3.40.50.1100 8 193 2.1E-45 T 29-03-2018 AM354_RS19245 af02a2266c997f977f30e300b8be3333 362 Gene3D G3DSA:3.40.190.10 156 314 2.9E-22 T 29-03-2018 AM354_RS19245 af02a2266c997f977f30e300b8be3333 362 SUPERFAMILY SSF53850 44 341 1.09E-52 T 29-03-2018 AM354_RS19245 af02a2266c997f977f30e300b8be3333 362 Pfam PF13531 Bacterial extracellular solute-binding protein 46 302 4.4E-16 T 29-03-2018 AM354_RS19245 af02a2266c997f977f30e300b8be3333 362 Gene3D G3DSA:3.40.190.10 35 155 6.6E-8 T 29-03-2018 AM354_RS09655 fc9e11f3917a59a670eedf70052608a1 72 Pfam PF05154 TM2 domain 3 53 4.2E-17 T 29-03-2018 IPR007829 TM2 domain AM354_RS22055 2778c05f5f000a40f701334a3f84e9b1 154 Pfam PF00578 AhpC/TSA family 7 134 8.9E-39 T 29-03-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AM354_RS22055 2778c05f5f000a40f701334a3f84e9b1 154 PIRSF PIRSF000239 1 153 3.3E-17 T 29-03-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AM354_RS22055 2778c05f5f000a40f701334a3f84e9b1 154 SUPERFAMILY SSF52833 1 153 3.12E-49 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS22055 2778c05f5f000a40f701334a3f84e9b1 154 Gene3D G3DSA:3.40.30.10 1 154 1.5E-42 T 29-03-2018 AM354_RS14240 14bd944dfd2c82b5c39dab09bf6fa5db 403 TIGRFAM TIGR00210 gltS: sodium/glutamate symporter 2 397 5.1E-189 T 29-03-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 AM354_RS14240 14bd944dfd2c82b5c39dab09bf6fa5db 403 Pfam PF03616 Sodium/glutamate symporter 2 366 3.8E-159 T 29-03-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 AM354_RS14240 14bd944dfd2c82b5c39dab09bf6fa5db 403 Hamap MF_02062 Sodium/glutamate symporter [gltS]. 2 397 24.843 T 29-03-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 AM354_RS04380 fccb39639e8d5cea2e118bb4fd4b0498 363 SUPERFAMILY SSF81271 279 359 1.31E-36 T 29-03-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 AM354_RS04380 fccb39639e8d5cea2e118bb4fd4b0498 363 PIRSF PIRSF006641 1 363 1.5E-159 T 29-03-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 AM354_RS04380 fccb39639e8d5cea2e118bb4fd4b0498 363 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 363 2.4E-176 T 29-03-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 AM354_RS04380 fccb39639e8d5cea2e118bb4fd4b0498 363 Pfam PF01926 50S ribosome-binding GTPase 5 121 1.0E-21 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 AM354_RS04380 fccb39639e8d5cea2e118bb4fd4b0498 363 Gene3D G3DSA:3.40.50.300 1 80 2.5E-8 T 29-03-2018 AM354_RS04380 fccb39639e8d5cea2e118bb4fd4b0498 363 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 363 46.677 T 29-03-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 AM354_RS04380 fccb39639e8d5cea2e118bb4fd4b0498 363 Pfam PF06071 Protein of unknown function (DUF933) 279 362 4.2E-40 T 29-03-2018 IPR013029 Domain of unknown function DUF933 Reactome: R-HSA-114608 AM354_RS04380 fccb39639e8d5cea2e118bb4fd4b0498 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 2.3E-34 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 AM354_RS04380 fccb39639e8d5cea2e118bb4fd4b0498 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 2.3E-34 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 AM354_RS04380 fccb39639e8d5cea2e118bb4fd4b0498 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 2.3E-34 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 AM354_RS04380 fccb39639e8d5cea2e118bb4fd4b0498 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 2.3E-34 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 AM354_RS04380 fccb39639e8d5cea2e118bb4fd4b0498 363 Gene3D G3DSA:1.10.150.300 110 200 4.2E-28 T 29-03-2018 IPR023192 TGS-like domain Reactome: R-HSA-114608 AM354_RS04380 fccb39639e8d5cea2e118bb4fd4b0498 363 Gene3D G3DSA:3.10.20.30 263 362 1.6E-46 T 29-03-2018 IPR012675 Beta-grasp domain AM354_RS04380 fccb39639e8d5cea2e118bb4fd4b0498 363 SUPERFAMILY SSF52540 3 301 5.4E-85 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS11965 d4682a250e3e35e63ac430e1f829dc19 705 SUPERFAMILY SSF55666 450 548 5.47E-28 T 29-03-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AM354_RS11965 d4682a250e3e35e63ac430e1f829dc19 705 SMART SM00322 552 617 1.9E-11 T 29-03-2018 IPR004087 K Homology domain GO:0003676 AM354_RS11965 d4682a250e3e35e63ac430e1f829dc19 705 Gene3D G3DSA:1.10.10.400 246 315 2.3E-20 T 29-03-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AM354_RS11965 d4682a250e3e35e63ac430e1f829dc19 705 Gene3D G3DSA:3.30.230.70 316 544 1.2E-57 T 29-03-2018 IPR027408 PNPase/RNase PH domain Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AM354_RS11965 d4682a250e3e35e63ac430e1f829dc19 705 Gene3D G3DSA:2.40.50.140 617 697 4.4E-26 T 29-03-2018 AM354_RS11965 d4682a250e3e35e63ac430e1f829dc19 705 SUPERFAMILY SSF54211 5 144 1.97E-49 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM354_RS11965 d4682a250e3e35e63ac430e1f829dc19 705 Pfam PF01138 3' exoribonuclease family, domain 1 16 144 1.3E-18 T 29-03-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AM354_RS11965 d4682a250e3e35e63ac430e1f829dc19 705 Pfam PF01138 3' exoribonuclease family, domain 1 324 456 2.6E-21 T 29-03-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AM354_RS11965 d4682a250e3e35e63ac430e1f829dc19 705 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 10 691 0.0 T 29-03-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AM354_RS11965 d4682a250e3e35e63ac430e1f829dc19 705 SUPERFAMILY SSF54791 554 622 2.4E-17 T 29-03-2018 IPR004088 K Homology domain, type 1 GO:0003723 AM354_RS11965 d4682a250e3e35e63ac430e1f829dc19 705 Gene3D G3DSA:3.30.230.70 13 245 1.2E-52 T 29-03-2018 IPR027408 PNPase/RNase PH domain Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AM354_RS11965 d4682a250e3e35e63ac430e1f829dc19 705 Pfam PF00575 S1 RNA binding domain 619 690 1.0E-22 T 29-03-2018 IPR003029 S1 domain GO:0003676 AM354_RS11965 d4682a250e3e35e63ac430e1f829dc19 705 SUPERFAMILY SSF55666 145 235 1.54E-30 T 29-03-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AM354_RS11965 d4682a250e3e35e63ac430e1f829dc19 705 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 3 693 30.411 T 29-03-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AM354_RS11965 d4682a250e3e35e63ac430e1f829dc19 705 SUPERFAMILY SSF54211 300 492 9.62E-47 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM354_RS11965 d4682a250e3e35e63ac430e1f829dc19 705 Gene3D G3DSA:3.30.1370.10 554 616 1.3E-12 T 29-03-2018 IPR004088 K Homology domain, type 1 GO:0003723 AM354_RS11965 d4682a250e3e35e63ac430e1f829dc19 705 PIRSF PIRSF005499 2 704 4.8E-301 T 29-03-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AM354_RS11965 d4682a250e3e35e63ac430e1f829dc19 705 Pfam PF00013 KH domain 557 614 2.4E-8 T 29-03-2018 IPR004088 K Homology domain, type 1 GO:0003723 AM354_RS11965 d4682a250e3e35e63ac430e1f829dc19 705 Pfam PF03725 3' exoribonuclease family, domain 2 460 527 2.5E-5 T 29-03-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AM354_RS11965 d4682a250e3e35e63ac430e1f829dc19 705 Pfam PF03725 3' exoribonuclease family, domain 2 147 210 9.5E-14 T 29-03-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AM354_RS11965 d4682a250e3e35e63ac430e1f829dc19 705 SMART SM00316 620 690 1.5E-27 T 29-03-2018 IPR022967 RNA-binding domain, S1 AM354_RS11965 d4682a250e3e35e63ac430e1f829dc19 705 SUPERFAMILY SSF46915 238 320 4.18E-20 T 29-03-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AM354_RS11965 d4682a250e3e35e63ac430e1f829dc19 705 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 241 320 1.0E-25 T 29-03-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AM354_RS11965 d4682a250e3e35e63ac430e1f829dc19 705 SUPERFAMILY SSF50249 608 692 1.34E-22 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS02935 b4716961885d44d46fdadd5c18f9c50e 697 SUPERFAMILY SSF53474 431 683 3.93E-47 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS02935 b4716961885d44d46fdadd5c18f9c50e 697 Gene3D G3DSA:2.130.10.120 69 418 1.0E-29 T 29-03-2018 AM354_RS02935 b4716961885d44d46fdadd5c18f9c50e 697 SUPERFAMILY SSF50993 20 428 4.18E-56 T 29-03-2018 AM354_RS02935 b4716961885d44d46fdadd5c18f9c50e 697 Gene3D G3DSA:3.40.50.1820 419 695 6.4E-42 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS02935 b4716961885d44d46fdadd5c18f9c50e 697 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 518 537 4.6E-46 T 29-03-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AM354_RS02935 b4716961885d44d46fdadd5c18f9c50e 697 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 463 481 4.6E-46 T 29-03-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AM354_RS02935 b4716961885d44d46fdadd5c18f9c50e 697 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 603 618 4.6E-46 T 29-03-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AM354_RS02935 b4716961885d44d46fdadd5c18f9c50e 697 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 622 644 4.6E-46 T 29-03-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AM354_RS02935 b4716961885d44d46fdadd5c18f9c50e 697 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 490 514 4.6E-46 T 29-03-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AM354_RS02935 b4716961885d44d46fdadd5c18f9c50e 697 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 548 568 4.6E-46 T 29-03-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AM354_RS02935 b4716961885d44d46fdadd5c18f9c50e 697 Pfam PF00326 Prolyl oligopeptidase family 486 690 6.2E-48 T 29-03-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 AM354_RS02935 b4716961885d44d46fdadd5c18f9c50e 697 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 329 421 7.8E-6 T 29-03-2018 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 AM354_RS02935 b4716961885d44d46fdadd5c18f9c50e 697 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 17 237 7.3E-26 T 29-03-2018 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 AM354_RS17445 b91cf4b87555954f134f17f1f7aefbbd 416 Gene3D G3DSA:1.20.1250.20 199 414 4.2E-22 T 29-03-2018 AM354_RS17445 b91cf4b87555954f134f17f1f7aefbbd 416 TIGRFAM TIGR00889 2A0110: nucleoside transporter 1 408 7.6E-182 T 29-03-2018 IPR004740 Nucleoside:H+ symporter GO:0005337|GO:0015858|GO:0016021 AM354_RS17445 b91cf4b87555954f134f17f1f7aefbbd 416 Pfam PF03825 Nucleoside H+ symporter 1 406 1.5E-159 T 29-03-2018 AM354_RS17445 b91cf4b87555954f134f17f1f7aefbbd 416 SUPERFAMILY SSF103473 8 406 8.2E-33 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS17445 b91cf4b87555954f134f17f1f7aefbbd 416 Gene3D G3DSA:1.20.1250.20 5 195 6.2E-8 T 29-03-2018 AM354_RS10900 da6f7a45a1e68f66b09bd79c8738bb07 195 SUPERFAMILY SSF53218 3 188 8.77E-47 T 29-03-2018 IPR001453 MoaB/Mog domain AM354_RS10900 da6f7a45a1e68f66b09bd79c8738bb07 195 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 69 82 - T 29-03-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 AM354_RS10900 da6f7a45a1e68f66b09bd79c8738bb07 195 Pfam PF00994 Probable molybdopterin binding domain 8 147 3.1E-27 T 29-03-2018 IPR001453 MoaB/Mog domain AM354_RS10900 da6f7a45a1e68f66b09bd79c8738bb07 195 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 4 147 2.0E-40 T 29-03-2018 IPR001453 MoaB/Mog domain AM354_RS10900 da6f7a45a1e68f66b09bd79c8738bb07 195 SMART SM00852 7 153 1.9E-21 T 29-03-2018 IPR001453 MoaB/Mog domain AM354_RS10900 da6f7a45a1e68f66b09bd79c8738bb07 195 Gene3D G3DSA:3.40.980.10 1 188 2.7E-39 T 29-03-2018 IPR001453 MoaB/Mog domain AM354_RS05815 3ea206aebe11f60ce6865df5b5470811 549 Pfam PF03063 Prismane/CO dehydrogenase family 1 544 2.8E-155 T 29-03-2018 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase GO:0016491|GO:0055114 KEGG: 00910+1.7.99.1 AM354_RS05815 3ea206aebe11f60ce6865df5b5470811 549 PIRSF PIRSF000076 1 549 2.2E-236 T 29-03-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 AM354_RS05815 3ea206aebe11f60ce6865df5b5470811 549 Hamap MF_00069 Hydroxylamine reductase [hcp]. 1 549 20.672 T 29-03-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 AM354_RS05815 3ea206aebe11f60ce6865df5b5470811 549 Gene3D G3DSA:1.20.1270.20 1 144 3.4E-35 T 29-03-2018 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 AM354_RS05815 3ea206aebe11f60ce6865df5b5470811 549 Gene3D G3DSA:1.20.1270.20 150 232 1.4E-17 T 29-03-2018 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 AM354_RS05815 3ea206aebe11f60ce6865df5b5470811 549 Gene3D G3DSA:3.40.50.2030 235 375 6.9E-63 T 29-03-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 AM354_RS05815 3ea206aebe11f60ce6865df5b5470811 549 TIGRFAM TIGR01703 hybrid_clust: hydroxylamine reductase 1 548 2.0E-237 T 29-03-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 AM354_RS05815 3ea206aebe11f60ce6865df5b5470811 549 Gene3D G3DSA:3.40.50.2030 376 549 1.1E-59 T 29-03-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 AM354_RS05815 3ea206aebe11f60ce6865df5b5470811 549 SUPERFAMILY SSF56821 1 548 1.98E-186 T 29-03-2018 IPR011254 Prismane-like GO:0003824|GO:0016491|GO:0055114 AM354_RS22250 d256ea5937640664fad83fecc9cb0a38 306 SUPERFAMILY SSF102886 6 302 2.09E-139 T 29-03-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AM354_RS22250 d256ea5937640664fad83fecc9cb0a38 306 PRINTS PR00073 Coprogen oxidase signature 125 147 1.3E-85 T 29-03-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AM354_RS22250 d256ea5937640664fad83fecc9cb0a38 306 PRINTS PR00073 Coprogen oxidase signature 90 114 1.3E-85 T 29-03-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AM354_RS22250 d256ea5937640664fad83fecc9cb0a38 306 PRINTS PR00073 Coprogen oxidase signature 31 47 1.3E-85 T 29-03-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AM354_RS22250 d256ea5937640664fad83fecc9cb0a38 306 PRINTS PR00073 Coprogen oxidase signature 48 69 1.3E-85 T 29-03-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AM354_RS22250 d256ea5937640664fad83fecc9cb0a38 306 PRINTS PR00073 Coprogen oxidase signature 262 288 1.3E-85 T 29-03-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AM354_RS22250 d256ea5937640664fad83fecc9cb0a38 306 PRINTS PR00073 Coprogen oxidase signature 162 191 1.3E-85 T 29-03-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AM354_RS22250 d256ea5937640664fad83fecc9cb0a38 306 PRINTS PR00073 Coprogen oxidase signature 234 261 1.3E-85 T 29-03-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AM354_RS22250 d256ea5937640664fad83fecc9cb0a38 306 PIRSF PIRSF000166 3 303 1.6E-128 T 29-03-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AM354_RS22250 d256ea5937640664fad83fecc9cb0a38 306 Gene3D G3DSA:3.40.1500.10 2 302 8.9E-140 T 29-03-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AM354_RS22250 d256ea5937640664fad83fecc9cb0a38 306 Pfam PF01218 Coproporphyrinogen III oxidase 9 302 1.4E-132 T 29-03-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AM354_RS22250 d256ea5937640664fad83fecc9cb0a38 306 Hamap MF_00333 Oxygen-dependent coproporphyrinogen-III oxidase [hemF]. 3 277 57.688 T 29-03-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AM354_RS22250 d256ea5937640664fad83fecc9cb0a38 306 ProSitePatterns PS01021 Coproporphyrinogen III oxidase signature. 166 190 - T 29-03-2018 IPR018375 Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AM354_RS01205 96656e4d4d5d64d95d5714995c0298c4 395 SMART SM00833 255 372 3.8E-48 T 29-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal AM354_RS01205 96656e4d4d5d64d95d5714995c0298c4 395 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 5 209 6.5E-55 T 29-03-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain AM354_RS01205 96656e4d4d5d64d95d5714995c0298c4 395 SUPERFAMILY SSF52540 2 312 1.5E-42 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS01205 96656e4d4d5d64d95d5714995c0298c4 395 Gene3D G3DSA:3.40.50.300 1 228 9.5E-52 T 29-03-2018 AM354_RS01205 96656e4d4d5d64d95d5714995c0298c4 395 Gene3D G3DSA:3.30.1220.10 239 373 2.5E-29 T 29-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal AM354_RS01205 96656e4d4d5d64d95d5714995c0298c4 395 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 255 372 8.4E-26 T 29-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal AM354_RS06575 ef7bad47d62d848f486182b7ace74342 227 Gene3D G3DSA:1.10.10.10 2 99 1.3E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS06575 ef7bad47d62d848f486182b7ace74342 227 SMART SM00418 12 91 1.6E-17 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS06575 ef7bad47d62d848f486182b7ace74342 227 Pfam PF01022 Bacterial regulatory protein, arsR family 19 64 1.5E-10 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS06575 ef7bad47d62d848f486182b7ace74342 227 SUPERFAMILY SSF46785 2 91 1.91E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS06575 ef7bad47d62d848f486182b7ace74342 227 Gene3D G3DSA:1.10.10.10 188 227 0.043 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS00960 fd64e6dd37a28a936973bc82eea8a705 507 Gene3D G3DSA:3.30.420.40 248 500 9.8E-57 T 29-03-2018 AM354_RS00960 fd64e6dd37a28a936973bc82eea8a705 507 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 7 251 1.4E-58 T 29-03-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AM354_RS00960 fd64e6dd37a28a936973bc82eea8a705 507 SUPERFAMILY SSF53067 256 493 7.92E-59 T 29-03-2018 AM354_RS00960 fd64e6dd37a28a936973bc82eea8a705 507 PIRSF PIRSF000538 4 499 1.8E-123 T 29-03-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AM354_RS00960 fd64e6dd37a28a936973bc82eea8a705 507 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 261 448 5.8E-46 T 29-03-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AM354_RS00960 fd64e6dd37a28a936973bc82eea8a705 507 Gene3D G3DSA:3.30.420.40 1 247 1.8E-68 T 29-03-2018 AM354_RS00960 fd64e6dd37a28a936973bc82eea8a705 507 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 361 381 - T 29-03-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AM354_RS00960 fd64e6dd37a28a936973bc82eea8a705 507 SUPERFAMILY SSF53067 6 251 8.83E-73 T 29-03-2018 AM354_RS05445 bfb065683eefbdc48a31b607af19af63 359 ProSitePatterns PS01068 OmpA-like domain. 268 312 - T 29-03-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 AM354_RS05445 bfb065683eefbdc48a31b607af19af63 359 Pfam PF01389 OmpA-like transmembrane domain 23 206 1.1E-73 T 29-03-2018 IPR000498 Outer membrane protein OmpA-like, transmembrane domain GO:0009279|GO:0016021 AM354_RS05445 bfb065683eefbdc48a31b607af19af63 359 SUPERFAMILY SSF56925 22 206 1.65E-40 T 29-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AM354_RS05445 bfb065683eefbdc48a31b607af19af63 359 PRINTS PR01022 Outer membrane protein A signature 177 191 6.9E-65 T 29-03-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 AM354_RS05445 bfb065683eefbdc48a31b607af19af63 359 PRINTS PR01022 Outer membrane protein A signature 191 205 6.9E-65 T 29-03-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 AM354_RS05445 bfb065683eefbdc48a31b607af19af63 359 PRINTS PR01022 Outer membrane protein A signature 251 270 6.9E-65 T 29-03-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 AM354_RS05445 bfb065683eefbdc48a31b607af19af63 359 PRINTS PR01022 Outer membrane protein A signature 326 339 6.9E-65 T 29-03-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 AM354_RS05445 bfb065683eefbdc48a31b607af19af63 359 PRINTS PR01022 Outer membrane protein A signature 114 130 6.9E-65 T 29-03-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 AM354_RS05445 bfb065683eefbdc48a31b607af19af63 359 PRINTS PR01022 Outer membrane protein A signature 290 309 6.9E-65 T 29-03-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 AM354_RS05445 bfb065683eefbdc48a31b607af19af63 359 PRINTS PR01022 Outer membrane protein A signature 222 237 6.9E-65 T 29-03-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 AM354_RS05445 bfb065683eefbdc48a31b607af19af63 359 Pfam PF00691 OmpA family 233 321 1.7E-22 T 29-03-2018 IPR006665 OmpA-like domain AM354_RS05445 bfb065683eefbdc48a31b607af19af63 359 Gene3D G3DSA:2.40.160.20 9 217 1.1E-45 T 29-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AM354_RS05445 bfb065683eefbdc48a31b607af19af63 359 Gene3D G3DSA:3.30.1330.60 218 358 2.8E-39 T 29-03-2018 IPR006665 OmpA-like domain AM354_RS05445 bfb065683eefbdc48a31b607af19af63 359 SUPERFAMILY SSF103088 220 347 3.4E-34 T 29-03-2018 IPR006665 OmpA-like domain AM354_RS05445 bfb065683eefbdc48a31b607af19af63 359 PRINTS PR01021 OMPA domain signature 281 297 3.2E-23 T 29-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AM354_RS05445 bfb065683eefbdc48a31b607af19af63 359 PRINTS PR01021 OMPA domain signature 266 281 3.2E-23 T 29-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AM354_RS05445 bfb065683eefbdc48a31b607af19af63 359 PRINTS PR01021 OMPA domain signature 234 256 3.2E-23 T 29-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AM354_RS01840 4fcfc0e9265832eaeae2876dfebad883 432 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 324 405 1.5E-8 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS01840 4fcfc0e9265832eaeae2876dfebad883 432 PIRSF PIRSF000018 15 432 1.4E-141 T 29-03-2018 IPR014353 Membrane-bound alcohol dehydrogenase, cytochrome c subunit GO:0005506|GO:0016020|GO:0016614|GO:0020037 AM354_RS01840 4fcfc0e9265832eaeae2876dfebad883 432 SUPERFAMILY SSF46626 306 416 3.35E-16 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS01840 4fcfc0e9265832eaeae2876dfebad883 432 SUPERFAMILY SSF46626 40 166 1.43E-22 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS01840 4fcfc0e9265832eaeae2876dfebad883 432 Gene3D G3DSA:1.10.760.10 178 312 2.6E-16 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS01840 4fcfc0e9265832eaeae2876dfebad883 432 SUPERFAMILY SSF46626 182 300 1.02E-13 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS01840 4fcfc0e9265832eaeae2876dfebad883 432 Pfam PF00034 Cytochrome c 48 147 3.1E-7 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS01840 4fcfc0e9265832eaeae2876dfebad883 432 Gene3D G3DSA:1.10.760.10 313 424 7.2E-14 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS01840 4fcfc0e9265832eaeae2876dfebad883 432 Gene3D G3DSA:1.10.760.10 21 161 1.7E-18 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS15420 4e76fbdb2b5c4296e007b31fd5fa9ee8 297 Pfam PF02126 Phosphotriesterase family 11 297 1.3E-100 T 29-03-2018 IPR001559 Phosphotriesterase GO:0008270|GO:0009056 AM354_RS15420 4e76fbdb2b5c4296e007b31fd5fa9ee8 297 SUPERFAMILY SSF51556 12 296 5.3E-91 T 29-03-2018 IPR032466 Metal-dependent hydrolase AM354_RS15420 4e76fbdb2b5c4296e007b31fd5fa9ee8 297 PIRSF PIRSF016839 2 297 1.2E-119 T 29-03-2018 AM354_RS15420 4e76fbdb2b5c4296e007b31fd5fa9ee8 297 Gene3D G3DSA:3.20.20.140 8 297 4.2E-55 T 29-03-2018 AM354_RS05325 f74e0ea61f251041847e70c11cb00756 309 SUPERFAMILY SSF53850 88 299 3.44E-36 T 29-03-2018 AM354_RS05325 f74e0ea61f251041847e70c11cb00756 309 Pfam PF03466 LysR substrate binding domain 88 296 1.4E-34 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS05325 f74e0ea61f251041847e70c11cb00756 309 Gene3D G3DSA:3.40.190.10 79 176 7.2E-11 T 29-03-2018 AM354_RS05325 f74e0ea61f251041847e70c11cb00756 309 SUPERFAMILY SSF46785 3 88 4.99E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS05325 f74e0ea61f251041847e70c11cb00756 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 2.0E-12 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS05325 f74e0ea61f251041847e70c11cb00756 309 Gene3D G3DSA:1.10.10.10 2 78 3.0E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS05325 f74e0ea61f251041847e70c11cb00756 309 Gene3D G3DSA:3.40.190.10 177 267 3.4E-18 T 29-03-2018 AM354_RS23600 3823e5455c1a1a910d35977602f0d0b3 190 Hamap MF_00646 Elongation factor P-like protein [yeiP]. 2 189 43.223 T 29-03-2018 IPR011897 Translation elongation factor P-like, YeiP AM354_RS23600 3823e5455c1a1a910d35977602f0d0b3 190 Pfam PF09285 Elongation factor P, C-terminal 133 188 4.2E-18 T 29-03-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 AM354_RS23600 3823e5455c1a1a910d35977602f0d0b3 190 ProSitePatterns PS01275 Elongation factor P signature. 154 173 - T 29-03-2018 IPR013852 Translation elongation factor P/YeiP, conserved site AM354_RS23600 3823e5455c1a1a910d35977602f0d0b3 190 PIRSF PIRSF005901 1 190 8.7E-59 T 29-03-2018 IPR020599 Translation elongation factor P/YeiP AM354_RS23600 3823e5455c1a1a910d35977602f0d0b3 190 TIGRFAM TIGR02178 yeiP: elongation factor P-like protein YeiP 3 189 5.6E-97 T 29-03-2018 IPR011897 Translation elongation factor P-like, YeiP AM354_RS23600 3823e5455c1a1a910d35977602f0d0b3 190 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 4 61 2.0E-16 T 29-03-2018 IPR013185 Translation elongation factor, KOW-like AM354_RS23600 3823e5455c1a1a910d35977602f0d0b3 190 SUPERFAMILY SSF50249 132 189 8.39E-14 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS23600 3823e5455c1a1a910d35977602f0d0b3 190 SUPERFAMILY SSF50249 67 130 2.74E-11 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS23600 3823e5455c1a1a910d35977602f0d0b3 190 Gene3D G3DSA:2.40.50.140 133 188 3.8E-20 T 29-03-2018 AM354_RS23600 3823e5455c1a1a910d35977602f0d0b3 190 SUPERFAMILY SSF50104 1 64 1.75E-10 T 29-03-2018 IPR008991 Translation protein SH3-like domain AM354_RS23600 3823e5455c1a1a910d35977602f0d0b3 190 Gene3D G3DSA:2.30.30.30 2 63 1.7E-14 T 29-03-2018 IPR014722 Ribosomal protein L2 domain 2 AM354_RS23600 3823e5455c1a1a910d35977602f0d0b3 190 Pfam PF01132 Elongation factor P (EF-P) OB domain 70 125 4.0E-13 T 29-03-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 AM354_RS23600 3823e5455c1a1a910d35977602f0d0b3 190 Gene3D G3DSA:2.40.50.140 66 131 4.9E-15 T 29-03-2018 AM354_RS23600 3823e5455c1a1a910d35977602f0d0b3 190 SMART SM01185 69 125 1.5E-15 T 29-03-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 AM354_RS23600 3823e5455c1a1a910d35977602f0d0b3 190 SMART SM00841 133 188 8.3E-25 T 29-03-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 AM354_RS06770 9d4fc9dcfbf2ee6774db0e75d3babe3c 258 SUPERFAMILY SSF51658 1 257 2.07E-83 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM354_RS06770 9d4fc9dcfbf2ee6774db0e75d3babe3c 258 PIRSF PIRSF006241 1 258 9.4E-87 T 29-03-2018 IPR026040 Hydroxypyruvate isomerase-like KEGG: 00630+5.3.1.22 AM354_RS06770 9d4fc9dcfbf2ee6774db0e75d3babe3c 258 Gene3D G3DSA:3.20.20.150 1 258 1.9E-55 T 29-03-2018 AM354_RS06770 9d4fc9dcfbf2ee6774db0e75d3babe3c 258 Pfam PF01261 Xylose isomerase-like TIM barrel 21 219 1.5E-34 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM354_RS00525 8ecace528be75b52cc948e5a2dfb5ad4 505 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 134 146 - T 29-03-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AM354_RS00525 8ecace528be75b52cc948e5a2dfb5ad4 505 TIGRFAM TIGR01312 XylB: xylulokinase 6 494 2.8E-161 T 29-03-2018 IPR006000 Xylulokinase GO:0004856|GO:0005997 KEGG: 00040+2.7.1.17 AM354_RS00525 8ecace528be75b52cc948e5a2dfb5ad4 505 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 263 444 1.0E-27 T 29-03-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AM354_RS00525 8ecace528be75b52cc948e5a2dfb5ad4 505 SUPERFAMILY SSF53067 3 254 5.18E-63 T 29-03-2018 AM354_RS00525 8ecace528be75b52cc948e5a2dfb5ad4 505 Gene3D G3DSA:3.30.420.40 250 502 1.5E-53 T 29-03-2018 AM354_RS00525 8ecace528be75b52cc948e5a2dfb5ad4 505 Gene3D G3DSA:3.30.420.40 1 249 2.2E-71 T 29-03-2018 AM354_RS00525 8ecace528be75b52cc948e5a2dfb5ad4 505 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 3 252 1.6E-68 T 29-03-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AM354_RS00525 8ecace528be75b52cc948e5a2dfb5ad4 505 PIRSF PIRSF000538 1 504 2.9E-116 T 29-03-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AM354_RS00525 8ecace528be75b52cc948e5a2dfb5ad4 505 SUPERFAMILY SSF53067 254 499 9.66E-49 T 29-03-2018 AM354_RS25365 b593d9b091be177ca6ace2a6a710ccb1 549 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 488 548 7.0E-9 T 29-03-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain AM354_RS25365 b593d9b091be177ca6ace2a6a710ccb1 549 PRINTS PR01005 Flagellar hook-associated protein signature 443 462 2.4E-75 T 29-03-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 AM354_RS25365 b593d9b091be177ca6ace2a6a710ccb1 549 PRINTS PR01005 Flagellar hook-associated protein signature 124 144 2.4E-75 T 29-03-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 AM354_RS25365 b593d9b091be177ca6ace2a6a710ccb1 549 PRINTS PR01005 Flagellar hook-associated protein signature 157 181 2.4E-75 T 29-03-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 AM354_RS25365 b593d9b091be177ca6ace2a6a710ccb1 549 PRINTS PR01005 Flagellar hook-associated protein signature 259 281 2.4E-75 T 29-03-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 AM354_RS25365 b593d9b091be177ca6ace2a6a710ccb1 549 PRINTS PR01005 Flagellar hook-associated protein signature 12 35 2.4E-75 T 29-03-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 AM354_RS25365 b593d9b091be177ca6ace2a6a710ccb1 549 PRINTS PR01005 Flagellar hook-associated protein signature 50 72 2.4E-75 T 29-03-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 AM354_RS25365 b593d9b091be177ca6ace2a6a710ccb1 549 PRINTS PR01005 Flagellar hook-associated protein signature 216 234 2.4E-75 T 29-03-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 AM354_RS25365 b593d9b091be177ca6ace2a6a710ccb1 549 PRINTS PR01005 Flagellar hook-associated protein signature 468 489 2.4E-75 T 29-03-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 AM354_RS25365 b593d9b091be177ca6ace2a6a710ccb1 549 PRINTS PR01005 Flagellar hook-associated protein signature 359 381 2.4E-75 T 29-03-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 AM354_RS25365 b593d9b091be177ca6ace2a6a710ccb1 549 PRINTS PR01005 Flagellar hook-associated protein signature 515 539 2.4E-75 T 29-03-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 AM354_RS25365 b593d9b091be177ca6ace2a6a710ccb1 549 Gene3D G3DSA:1.20.1170.10 2 521 1.3E-5 T 29-03-2018 AM354_RS25365 b593d9b091be177ca6ace2a6a710ccb1 549 Pfam PF00460 Flagella basal body rod protein 6 35 7.5E-9 T 29-03-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 AM354_RS25365 b593d9b091be177ca6ace2a6a710ccb1 549 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 4 337 1.2E-79 T 29-03-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 AM354_RS25365 b593d9b091be177ca6ace2a6a710ccb1 549 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 12 32 - T 29-03-2018 IPR019776 Flagellar basal body rod protein, conserved site AM354_RS25365 b593d9b091be177ca6ace2a6a710ccb1 549 SUPERFAMILY SSF64518 115 547 1.1E-49 T 29-03-2018 AM354_RS19345 61d37ffa256722d347167055b73b14b5 286 TIGRFAM TIGR00542 hxl6Piso_put: putative hexulose-6-phosphate isomerase 2 286 4.4E-147 T 29-03-2018 IPR004560 L-ribulose-5-phosphate 3-epimerase GO:0005975|GO:0016861 KEGG: 00053+5.1.3.22|MetaCyc: PWY-6961 AM354_RS19345 61d37ffa256722d347167055b73b14b5 286 SUPERFAMILY SSF51658 11 278 4.71E-59 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM354_RS19345 61d37ffa256722d347167055b73b14b5 286 Gene3D G3DSA:3.20.20.150 1 286 4.9E-57 T 29-03-2018 AM354_RS19345 61d37ffa256722d347167055b73b14b5 286 Pfam PF01261 Xylose isomerase-like TIM barrel 23 234 7.2E-37 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM354_RS04435 24b344e023c7166116b7a7d11b81207d 427 SUPERFAMILY SSF51735 9 192 1.78E-41 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS04435 24b344e023c7166116b7a7d11b81207d 427 Gene3D G3DSA:3.40.50.720 225 424 1.1E-48 T 29-03-2018 AM354_RS04435 24b344e023c7166116b7a7d11b81207d 427 Gene3D G3DSA:1.20.5.170 202 224 1.4E-10 T 29-03-2018 AM354_RS04435 24b344e023c7166116b7a7d11b81207d 427 SMART SM00984 318 420 1.1E-20 T 29-03-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AM354_RS04435 24b344e023c7166116b7a7d11b81207d 427 PIRSF PIRSF500136 2 426 1.6E-136 T 29-03-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 AM354_RS04435 24b344e023c7166116b7a7d11b81207d 427 PIRSF PIRSF000124 8 424 2.7E-46 T 29-03-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 AM354_RS04435 24b344e023c7166116b7a7d11b81207d 427 Gene3D G3DSA:3.40.50.720 2 200 8.2E-36 T 29-03-2018 AM354_RS04435 24b344e023c7166116b7a7d11b81207d 427 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 9 179 1.5E-30 T 29-03-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AM354_RS04435 24b344e023c7166116b7a7d11b81207d 427 SUPERFAMILY SSF48179 202 293 2.72E-23 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM354_RS04435 24b344e023c7166116b7a7d11b81207d 427 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 318 420 2.6E-18 T 29-03-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AM354_RS04435 24b344e023c7166116b7a7d11b81207d 427 SUPERFAMILY SSF52413 303 421 2.22E-21 T 29-03-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AM354_RS04435 24b344e023c7166116b7a7d11b81207d 427 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 203 291 3.5E-22 T 29-03-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AM354_RS04435 24b344e023c7166116b7a7d11b81207d 427 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 8 414 8.8E-108 T 29-03-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 AM354_RS10620 9533f287b0d08fa3580133fa83e0334b 334 Gene3D G3DSA:3.40.50.2300 57 165 1.3E-25 T 29-03-2018 AM354_RS10620 9533f287b0d08fa3580133fa83e0334b 334 SMART SM00354 1 73 7.4E-32 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS10620 9533f287b0d08fa3580133fa83e0334b 334 ProSitePatterns PS00356 LacI-type HTH domain signature. 3 21 - T 29-03-2018 AM354_RS10620 9533f287b0d08fa3580133fa83e0334b 334 SUPERFAMILY SSF47413 2 58 8.7E-16 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS10620 9533f287b0d08fa3580133fa83e0334b 334 TIGRFAM TIGR02417 fruct_sucro_rep: D-fructose-responsive transcription factor 2 328 2.7E-150 T 29-03-2018 IPR012781 D-fructose-responsive transcription factor GO:0003677|GO:0006355|GO:0009750 AM354_RS10620 9533f287b0d08fa3580133fa83e0334b 334 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 62 311 5.6E-16 T 29-03-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain AM354_RS10620 9533f287b0d08fa3580133fa83e0334b 334 Gene3D G3DSA:1.10.260.40 1 56 7.6E-20 T 29-03-2018 AM354_RS10620 9533f287b0d08fa3580133fa83e0334b 334 Pfam PF00356 Bacterial regulatory proteins, lacI family 2 50 4.9E-19 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS10620 9533f287b0d08fa3580133fa83e0334b 334 SUPERFAMILY SSF53822 60 314 1.0E-41 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS10620 9533f287b0d08fa3580133fa83e0334b 334 Gene3D G3DSA:3.40.50.2300 166 334 3.4E-20 T 29-03-2018 AM354_RS02155 17f57266167da67d5742926b6eb52ef9 626 Pfam PF00990 Diguanylate cyclase, GGDEF domain 463 619 4.2E-42 T 29-03-2018 IPR000160 GGDEF domain AM354_RS02155 17f57266167da67d5742926b6eb52ef9 626 Gene3D G3DSA:3.30.450.40 8 176 1.2E-23 T 29-03-2018 IPR029016 GAF domain-like AM354_RS02155 17f57266167da67d5742926b6eb52ef9 626 SUPERFAMILY SSF55073 468 623 4.97E-41 T 29-03-2018 IPR029787 Nucleotide cyclase AM354_RS02155 17f57266167da67d5742926b6eb52ef9 626 Gene3D G3DSA:3.30.70.270 455 625 1.4E-50 T 29-03-2018 AM354_RS02155 17f57266167da67d5742926b6eb52ef9 626 SMART SM00086 252 294 1.1E-9 T 29-03-2018 IPR001610 PAC motif AM354_RS02155 17f57266167da67d5742926b6eb52ef9 626 Gene3D G3DSA:3.30.450.20 177 331 8.6E-30 T 29-03-2018 AM354_RS02155 17f57266167da67d5742926b6eb52ef9 626 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 459 622 2.8E-35 T 29-03-2018 IPR000160 GGDEF domain AM354_RS02155 17f57266167da67d5742926b6eb52ef9 626 SMART SM00267 452 624 1.8E-53 T 29-03-2018 IPR000160 GGDEF domain AM354_RS02155 17f57266167da67d5742926b6eb52ef9 626 Gene3D G3DSA:3.30.450.20 332 454 6.1E-22 T 29-03-2018 AM354_RS02155 17f57266167da67d5742926b6eb52ef9 626 SUPERFAMILY SSF55785 330 450 2.44E-16 T 29-03-2018 IPR000014 PAS domain AM354_RS02155 17f57266167da67d5742926b6eb52ef9 626 SUPERFAMILY SSF55785 187 297 6.46E-24 T 29-03-2018 IPR000014 PAS domain AM354_RS02155 17f57266167da67d5742926b6eb52ef9 626 Pfam PF08448 PAS fold 352 454 1.4E-11 T 29-03-2018 IPR013656 PAS fold-4 AM354_RS02155 17f57266167da67d5742926b6eb52ef9 626 Pfam PF08447 PAS fold 203 288 1.3E-13 T 29-03-2018 IPR013655 PAS fold-3 GO:0005515 AM354_RS02155 17f57266167da67d5742926b6eb52ef9 626 SUPERFAMILY SSF55781 30 162 8.24E-28 T 29-03-2018 IPR029016 GAF domain-like AM354_RS02155 17f57266167da67d5742926b6eb52ef9 626 SMART SM00065 26 171 2.5E-11 T 29-03-2018 IPR003018 GAF domain GO:0005515 AM354_RS02155 17f57266167da67d5742926b6eb52ef9 626 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 176 301 9.9E-26 T 29-03-2018 IPR000014 PAS domain AM354_RS02155 17f57266167da67d5742926b6eb52ef9 626 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 342 459 6.0E-13 T 29-03-2018 IPR000014 PAS domain AM354_RS02155 17f57266167da67d5742926b6eb52ef9 626 SMART SM00091 179 245 2.7E-10 T 29-03-2018 IPR000014 PAS domain AM354_RS02155 17f57266167da67d5742926b6eb52ef9 626 SMART SM00091 345 411 5.1E-4 T 29-03-2018 IPR000014 PAS domain AM354_RS02155 17f57266167da67d5742926b6eb52ef9 626 Pfam PF01590 GAF domain 31 154 1.7E-10 T 29-03-2018 IPR003018 GAF domain GO:0005515 AM354_RS08985 0fef54730bf3ed3e6c411fbefbaa1b4e 265 SUPERFAMILY SSF46894 23 101 3.68E-15 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS08985 0fef54730bf3ed3e6c411fbefbaa1b4e 265 Gene3D G3DSA:1.10.10.10 4 105 1.7E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS08985 0fef54730bf3ed3e6c411fbefbaa1b4e 265 SMART SM00862 24 101 4.8E-13 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS08985 0fef54730bf3ed3e6c411fbefbaa1b4e 265 Pfam PF00486 Transcriptional regulatory protein, C terminal 24 101 8.8E-15 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS13840 f40278b32930b873b140e2701a81bf0f 322 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 43 56 - T 29-03-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 AM354_RS13840 f40278b32930b873b140e2701a81bf0f 322 SUPERFAMILY SSF53686 6 308 5.76E-91 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM354_RS13840 f40278b32930b873b140e2701a81bf0f 322 Gene3D G3DSA:3.40.50.1100 134 321 4.2E-44 T 29-03-2018 AM354_RS13840 f40278b32930b873b140e2701a81bf0f 322 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 17 305 1.4E-80 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM354_RS13840 f40278b32930b873b140e2701a81bf0f 322 Gene3D G3DSA:3.40.50.1100 28 133 1.1E-29 T 29-03-2018 AM354_RS04340 921de160956c893bd57042d7215e37c3 361 SMART SM00937 63 178 2.0E-71 T 29-03-2018 IPR005139 Peptide chain release factor GO:0006415 AM354_RS04340 921de160956c893bd57042d7215e37c3 361 Gene3D G3DSA:3.30.160.20 209 291 1.4E-32 T 29-03-2018 AM354_RS04340 921de160956c893bd57042d7215e37c3 361 Pfam PF03462 PCRF domain 12 203 9.1E-76 T 29-03-2018 IPR005139 Peptide chain release factor GO:0006415 AM354_RS04340 921de160956c893bd57042d7215e37c3 361 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 5 357 40.898 T 29-03-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 AM354_RS04340 921de160956c893bd57042d7215e37c3 361 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 228 244 - T 29-03-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AM354_RS04340 921de160956c893bd57042d7215e37c3 361 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 1 357 1.7E-175 T 29-03-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 AM354_RS04340 921de160956c893bd57042d7215e37c3 361 Gene3D G3DSA:1.20.58.410 3 100 2.4E-20 T 29-03-2018 AM354_RS04340 921de160956c893bd57042d7215e37c3 361 SUPERFAMILY SSF75620 12 353 7.72E-137 T 29-03-2018 AM354_RS04340 921de160956c893bd57042d7215e37c3 361 Pfam PF00472 RF-1 domain 216 321 1.2E-40 T 29-03-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AM354_RS15485 c7974b8697ba607e1123bb9c30569f43 476 Gene3D G3DSA:3.40.50.2000 262 458 1.3E-33 T 29-03-2018 AM354_RS15485 c7974b8697ba607e1123bb9c30569f43 476 SUPERFAMILY SSF53756 5 476 5.58E-115 T 29-03-2018 AM354_RS15485 c7974b8697ba607e1123bb9c30569f43 476 Pfam PF08323 Starch synthase catalytic domain 2 234 1.3E-70 T 29-03-2018 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 AM354_RS15485 c7974b8697ba607e1123bb9c30569f43 476 Hamap MF_00484 Glycogen synthase [glgA]. 1 476 45.711 T 29-03-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 AM354_RS15485 c7974b8697ba607e1123bb9c30569f43 476 Pfam PF00534 Glycosyl transferases group 1 288 448 1.9E-13 T 29-03-2018 IPR001296 Glycosyl transferase, family 1 AM354_RS15485 c7974b8697ba607e1123bb9c30569f43 476 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 1 476 4.2E-169 T 29-03-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 AM354_RS15485 c7974b8697ba607e1123bb9c30569f43 476 Gene3D G3DSA:3.40.50.2000 10 261 1.7E-11 T 29-03-2018 AM354_RS03290 51e70add1a919bc215e8b609cd064df6 276 SUPERFAMILY SSF53807 24 271 1.61E-50 T 29-03-2018 AM354_RS03290 51e70add1a919bc215e8b609cd064df6 276 Pfam PF01497 Periplasmic binding protein 27 251 2.2E-27 T 29-03-2018 IPR002491 ABC transporter periplasmic binding domain GO:0005488 AM354_RS03290 51e70add1a919bc215e8b609cd064df6 276 Gene3D G3DSA:3.40.50.1980 131 275 4.3E-24 T 29-03-2018 AM354_RS03290 51e70add1a919bc215e8b609cd064df6 276 Gene3D G3DSA:3.40.50.1980 23 130 2.5E-26 T 29-03-2018 AM354_RS08540 bc70623db16b1d8f500de172133efc5f 461 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 2 461 38.739 T 29-03-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 AM354_RS08540 bc70623db16b1d8f500de172133efc5f 461 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 25 36 7.2E-30 T 29-03-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AM354_RS08540 bc70623db16b1d8f500de172133efc5f 461 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 191 209 7.2E-30 T 29-03-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AM354_RS08540 bc70623db16b1d8f500de172133efc5f 461 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 222 243 7.2E-30 T 29-03-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AM354_RS08540 bc70623db16b1d8f500de172133efc5f 461 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 61 70 7.2E-30 T 29-03-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AM354_RS08540 bc70623db16b1d8f500de172133efc5f 461 SUPERFAMILY SSF52374 1 313 8.45E-99 T 29-03-2018 AM354_RS08540 bc70623db16b1d8f500de172133efc5f 461 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 15 313 3.8E-139 T 29-03-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 AM354_RS08540 bc70623db16b1d8f500de172133efc5f 461 Gene3D G3DSA:3.40.50.620 1 305 2.6E-89 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS08540 bc70623db16b1d8f500de172133efc5f 461 SUPERFAMILY SSF47323 316 460 2.48E-43 T 29-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS08540 bc70623db16b1d8f500de172133efc5f 461 Pfam PF09190 DALR domain 341 402 1.4E-25 T 29-03-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 AM354_RS08540 bc70623db16b1d8f500de172133efc5f 461 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 2 460 1.6E-192 T 29-03-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 AM354_RS08540 bc70623db16b1d8f500de172133efc5f 461 SMART SM00840 341 402 1.9E-29 T 29-03-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 AM354_RS08540 bc70623db16b1d8f500de172133efc5f 461 Gene3D G3DSA:1.20.120.640 306 394 3.3E-22 T 29-03-2018 AM354_RS23825 7b354c32075871b78c7ee9d4616d6ccd 334 Gene3D G3DSA:3.40.50.2300 61 175 6.0E-26 T 29-03-2018 AM354_RS23825 7b354c32075871b78c7ee9d4616d6ccd 334 Pfam PF00356 Bacterial regulatory proteins, lacI family 9 54 4.6E-16 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS23825 7b354c32075871b78c7ee9d4616d6ccd 334 SMART SM00354 7 77 9.4E-26 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS23825 7b354c32075871b78c7ee9d4616d6ccd 334 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 67 268 7.2E-20 T 29-03-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain AM354_RS23825 7b354c32075871b78c7ee9d4616d6ccd 334 SUPERFAMILY SSF53822 65 319 4.91E-43 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS23825 7b354c32075871b78c7ee9d4616d6ccd 334 SUPERFAMILY SSF47413 7 65 1.88E-16 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS23825 7b354c32075871b78c7ee9d4616d6ccd 334 Gene3D G3DSA:3.40.50.2300 176 334 6.7E-25 T 29-03-2018 AM354_RS23825 7b354c32075871b78c7ee9d4616d6ccd 334 Gene3D G3DSA:1.10.260.40 8 60 6.1E-20 T 29-03-2018 AM354_RS05585 89528795833e0b0a8529fc448c9446e6 602 SUPERFAMILY SSF141523 361 414 1.19E-19 T 29-03-2018 AM354_RS05585 89528795833e0b0a8529fc448c9446e6 602 SUPERFAMILY SSF141523 471 520 1.19E-19 T 29-03-2018 AM354_RS05585 89528795833e0b0a8529fc448c9446e6 602 SUPERFAMILY SSF47090 298 341 5.41E-9 T 29-03-2018 IPR002477 Peptidoglycan binding-like AM354_RS05585 89528795833e0b0a8529fc448c9446e6 602 Pfam PF03734 L,D-transpeptidase catalytic domain 363 530 1.1E-28 T 29-03-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AM354_RS05585 89528795833e0b0a8529fc448c9446e6 602 Pfam PF01471 Putative peptidoglycan binding domain 300 334 2.4E-5 T 29-03-2018 IPR002477 Peptidoglycan binding-like AM354_RS05585 89528795833e0b0a8529fc448c9446e6 602 Gene3D G3DSA:2.40.440.10 360 546 1.3E-23 T 29-03-2018 AM354_RS05585 89528795833e0b0a8529fc448c9446e6 602 Gene3D G3DSA:1.10.101.10 208 340 1.4E-20 T 29-03-2018 IPR002477 Peptidoglycan binding-like AM354_RS03360 6bd977b0e1dd9c43130a530d8f56462e 251 Pfam PF00005 ABC transporter 16 163 2.1E-18 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS03360 6bd977b0e1dd9c43130a530d8f56462e 251 SMART SM00382 22 227 2.4E-6 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS03360 6bd977b0e1dd9c43130a530d8f56462e 251 Hamap MF_01005 Vitamin B12 import ATP-binding protein BtuD [btuD]. 1 249 44.823 T 29-03-2018 IPR023693 ABC transporter, vitamin B12, BtuD GO:0005524|GO:0015889|GO:0016887 AM354_RS03360 6bd977b0e1dd9c43130a530d8f56462e 251 SUPERFAMILY SSF52540 15 227 6.09E-45 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS03360 6bd977b0e1dd9c43130a530d8f56462e 251 ProSitePatterns PS00211 ABC transporters family signature. 128 142 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS03360 6bd977b0e1dd9c43130a530d8f56462e 251 Gene3D G3DSA:3.40.50.300 12 233 2.0E-43 T 29-03-2018 AM354_RS12260 961f793915471787e0732589c44ddbc4 250 Pfam PF00326 Prolyl oligopeptidase family 97 234 3.1E-9 T 29-03-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 AM354_RS12260 961f793915471787e0732589c44ddbc4 250 SUPERFAMILY SSF53474 10 249 1.55E-35 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS12260 961f793915471787e0732589c44ddbc4 250 Gene3D G3DSA:3.40.50.1820 2 250 9.7E-33 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS03000 e223902fb9ec5cc62458d434273e4ba9 286 TIGRFAM TIGR00687 pyridox_kin: pyridoxal kinase 1 285 5.7E-132 T 29-03-2018 IPR004625 Pyridoxine kinase GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-6798695|Reactome: R-HSA-964975 AM354_RS03000 e223902fb9ec5cc62458d434273e4ba9 286 SUPERFAMILY SSF53613 1 279 2.46E-75 T 29-03-2018 IPR029056 Ribokinase-like AM354_RS03000 e223902fb9ec5cc62458d434273e4ba9 286 Gene3D G3DSA:3.40.1190.20 1 286 8.6E-63 T 29-03-2018 IPR029056 Ribokinase-like AM354_RS03000 e223902fb9ec5cc62458d434273e4ba9 286 Pfam PF08543 Phosphomethylpyrimidine kinase 73 263 9.4E-14 T 29-03-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 AM354_RS03000 e223902fb9ec5cc62458d434273e4ba9 286 Hamap MF_01639 Pyridoxal kinase PdxY [pdxY]. 1 286 53.905 T 29-03-2018 IPR023685 Pyridoxal kinase PdxY GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282 AM354_RS08220 7d3ea668cb432f842812b27f931a2199 250 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 6 223 1.9E-62 T 29-03-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA AM354_RS08220 7d3ea668cb432f842812b27f931a2199 250 Gene3D G3DSA:3.40.50.1000 1 249 7.2E-32 T 29-03-2018 IPR023214 HAD-like domain AM354_RS08220 7d3ea668cb432f842812b27f931a2199 250 SUPERFAMILY SSF56784 1 247 2.07E-66 T 29-03-2018 IPR023214 HAD-like domain AM354_RS08220 7d3ea668cb432f842812b27f931a2199 250 Pfam PF13344 Haloacid dehalogenase-like hydrolase 6 105 2.4E-23 T 29-03-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA AM354_RS08220 7d3ea668cb432f842812b27f931a2199 250 Pfam PF13242 HAD-hyrolase-like 174 246 1.2E-20 T 29-03-2018 AM354_RS02340 e438b53fd1eaab1ae74306a840388e1f 64 Gene3D G3DSA:1.10.1220.10 2 44 9.9E-15 T 29-03-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AM354_RS02340 e438b53fd1eaab1ae74306a840388e1f 64 SUPERFAMILY SSF47598 2 46 1.37E-10 T 29-03-2018 IPR010985 Ribbon-helix-helix GO:0006355 AM354_RS02340 e438b53fd1eaab1ae74306a840388e1f 64 Pfam PF01402 Ribbon-helix-helix protein, copG family 7 43 4.2E-5 T 29-03-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 AM354_RS00745 108824f0c1e2390c6ec4aa03d7f502f9 893 Pfam PF01464 Transglycosylase SLT domain 41 144 3.4E-20 T 29-03-2018 IPR008258 Transglycosylase SLT domain 1 AM354_RS00745 108824f0c1e2390c6ec4aa03d7f502f9 893 Gene3D G3DSA:1.10.530.10 6 158 4.2E-33 T 29-03-2018 AM354_RS00745 108824f0c1e2390c6ec4aa03d7f502f9 893 SUPERFAMILY SSF53955 34 156 4.76E-31 T 29-03-2018 IPR023346 Lysozyme-like domain AM354_RS15440 5e7ebe505a394fb895b2ac90be5ce2da 303 Gene3D G3DSA:3.40.190.10 202 302 1.1E-13 T 29-03-2018 AM354_RS15440 5e7ebe505a394fb895b2ac90be5ce2da 303 Gene3D G3DSA:3.40.190.10 78 201 9.8E-34 T 29-03-2018 AM354_RS15440 5e7ebe505a394fb895b2ac90be5ce2da 303 SUPERFAMILY SSF53850 75 303 5.9E-71 T 29-03-2018 AM354_RS15440 5e7ebe505a394fb895b2ac90be5ce2da 303 SUPERFAMILY SSF46785 17 68 3.16E-5 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS15440 5e7ebe505a394fb895b2ac90be5ce2da 303 Pfam PF14502 Helix-turn-helix domain 25 72 5.2E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS15440 5e7ebe505a394fb895b2ac90be5ce2da 303 Pfam PF14503 YhfZ C-terminal domain 76 303 3.8E-75 T 29-03-2018 IPR032791 Uncharacterised protein YhfZ, C-terminal domain AM354_RS15440 5e7ebe505a394fb895b2ac90be5ce2da 303 Gene3D G3DSA:1.10.10.10 12 77 1.9E-6 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS16660 d8997b46162c2285db362657ec865634 449 SMART SM00878 336 441 4.7E-64 T 29-03-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AM354_RS16660 d8997b46162c2285db362657ec865634 449 SUPERFAMILY SSF51246 331 444 2.62E-43 T 29-03-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AM354_RS16660 d8997b46162c2285db362657ec865634 449 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 447 1.3E-250 T 29-03-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 AM354_RS16660 d8997b46162c2285db362657ec865634 449 Gene3D G3DSA:3.40.50.20 1 123 9.4E-52 T 29-03-2018 AM354_RS16660 d8997b46162c2285db362657ec865634 449 Pfam PF02785 Biotin carboxylase C-terminal domain 336 441 2.4E-38 T 29-03-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AM354_RS16660 d8997b46162c2285db362657ec865634 449 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 323 3.4E-86 T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AM354_RS16660 d8997b46162c2285db362657ec865634 449 SUPERFAMILY SSF56059 83 347 8.25E-70 T 29-03-2018 AM354_RS16660 d8997b46162c2285db362657ec865634 449 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AM354_RS16660 d8997b46162c2285db362657ec865634 449 SUPERFAMILY SSF52440 1 113 1.08E-46 T 29-03-2018 IPR016185 Pre-ATP-grasp domain AM354_RS16660 d8997b46162c2285db362657ec865634 449 Gene3D G3DSA:3.30.1490.20 124 210 1.7E-20 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AM354_RS16660 d8997b46162c2285db362657ec865634 449 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 154 168 - T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AM354_RS16660 d8997b46162c2285db362657ec865634 449 Gene3D G3DSA:3.30.470.20 211 444 1.1E-96 T 29-03-2018 AM354_RS16660 d8997b46162c2285db362657ec865634 449 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 3.3E-44 T 29-03-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AM354_RS25355 2b725e4e25d01776be33c3edfb9763a9 314 Gene3D G3DSA:1.10.530.10 147 299 8.0E-35 T 29-03-2018 AM354_RS25355 2b725e4e25d01776be33c3edfb9763a9 314 SMART SM00047 143 307 2.5E-46 T 29-03-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 AM354_RS25355 2b725e4e25d01776be33c3edfb9763a9 314 PRINTS PR01002 Flagellar protein FlgJ signature 53 73 1.2E-108 T 29-03-2018 AM354_RS25355 2b725e4e25d01776be33c3edfb9763a9 314 PRINTS PR01002 Flagellar protein FlgJ signature 148 171 1.2E-108 T 29-03-2018 AM354_RS25355 2b725e4e25d01776be33c3edfb9763a9 314 PRINTS PR01002 Flagellar protein FlgJ signature 192 213 1.2E-108 T 29-03-2018 AM354_RS25355 2b725e4e25d01776be33c3edfb9763a9 314 PRINTS PR01002 Flagellar protein FlgJ signature 296 313 1.2E-108 T 29-03-2018 AM354_RS25355 2b725e4e25d01776be33c3edfb9763a9 314 PRINTS PR01002 Flagellar protein FlgJ signature 278 296 1.2E-108 T 29-03-2018 AM354_RS25355 2b725e4e25d01776be33c3edfb9763a9 314 PRINTS PR01002 Flagellar protein FlgJ signature 214 235 1.2E-108 T 29-03-2018 AM354_RS25355 2b725e4e25d01776be33c3edfb9763a9 314 PRINTS PR01002 Flagellar protein FlgJ signature 172 190 1.2E-108 T 29-03-2018 AM354_RS25355 2b725e4e25d01776be33c3edfb9763a9 314 PRINTS PR01002 Flagellar protein FlgJ signature 258 277 1.2E-108 T 29-03-2018 AM354_RS25355 2b725e4e25d01776be33c3edfb9763a9 314 PRINTS PR01002 Flagellar protein FlgJ signature 6 26 1.2E-108 T 29-03-2018 AM354_RS25355 2b725e4e25d01776be33c3edfb9763a9 314 PRINTS PR01002 Flagellar protein FlgJ signature 112 137 1.2E-108 T 29-03-2018 AM354_RS25355 2b725e4e25d01776be33c3edfb9763a9 314 PRINTS PR01002 Flagellar protein FlgJ signature 28 51 1.2E-108 T 29-03-2018 AM354_RS25355 2b725e4e25d01776be33c3edfb9763a9 314 PRINTS PR01002 Flagellar protein FlgJ signature 236 257 1.2E-108 T 29-03-2018 AM354_RS25355 2b725e4e25d01776be33c3edfb9763a9 314 PRINTS PR01002 Flagellar protein FlgJ signature 74 96 1.2E-108 T 29-03-2018 AM354_RS25355 2b725e4e25d01776be33c3edfb9763a9 314 Pfam PF10135 Rod binding protein 50 96 4.2E-17 T 29-03-2018 IPR019301 Flagellar protein FlgJ, N-terminal AM354_RS25355 2b725e4e25d01776be33c3edfb9763a9 314 TIGRFAM TIGR02541 flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ 12 296 2.4E-111 T 29-03-2018 IPR013377 Peptidoglycan hydrolase FlgJ GO:0016798|GO:0044780 AM354_RS25355 2b725e4e25d01776be33c3edfb9763a9 314 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 163 296 2.8E-20 T 29-03-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 AM354_RS19575 324f9320b5df99980aff41935b312afe 308 Pfam PF00294 pfkB family carbohydrate kinase 4 295 3.3E-64 T 29-03-2018 IPR011611 Carbohydrate kinase PfkB AM354_RS19575 324f9320b5df99980aff41935b312afe 308 PRINTS PR00990 Ribokinase signature 219 230 2.2E-28 T 29-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AM354_RS19575 324f9320b5df99980aff41935b312afe 308 PRINTS PR00990 Ribokinase signature 7 28 2.2E-28 T 29-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AM354_RS19575 324f9320b5df99980aff41935b312afe 308 PRINTS PR00990 Ribokinase signature 107 120 2.2E-28 T 29-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AM354_RS19575 324f9320b5df99980aff41935b312afe 308 PRINTS PR00990 Ribokinase signature 34 53 2.2E-28 T 29-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AM354_RS19575 324f9320b5df99980aff41935b312afe 308 PRINTS PR00990 Ribokinase signature 175 190 2.2E-28 T 29-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AM354_RS19575 324f9320b5df99980aff41935b312afe 308 TIGRFAM TIGR02152 D_ribokin_bact: ribokinase 5 299 1.3E-91 T 29-03-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 AM354_RS19575 324f9320b5df99980aff41935b312afe 308 SUPERFAMILY SSF53613 4 303 4.52E-76 T 29-03-2018 IPR029056 Ribokinase-like AM354_RS19575 324f9320b5df99980aff41935b312afe 308 Gene3D G3DSA:3.40.1190.20 1 306 4.8E-76 T 29-03-2018 IPR029056 Ribokinase-like AM354_RS19575 324f9320b5df99980aff41935b312afe 308 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 248 261 - T 29-03-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AM354_RS19575 324f9320b5df99980aff41935b312afe 308 Hamap MF_01987 Ribokinase [rbsK]. 3 303 23.336 T 29-03-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 AM354_RS23775 c3e6225cdb9fb7602a22a5d68eb8930e 262 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 29 254 6.1E-64 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM354_RS23775 c3e6225cdb9fb7602a22a5d68eb8930e 262 Gene3D G3DSA:3.40.190.10 16 140 1.6E-36 T 29-03-2018 AM354_RS23775 c3e6225cdb9fb7602a22a5d68eb8930e 262 SMART SM00062 28 256 7.7E-75 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM354_RS23775 c3e6225cdb9fb7602a22a5d68eb8930e 262 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 10 253 2.5E-81 T 29-03-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0006810|GO:0030288 AM354_RS23775 c3e6225cdb9fb7602a22a5d68eb8930e 262 Gene3D G3DSA:3.40.190.10 141 262 3.3E-17 T 29-03-2018 AM354_RS23775 c3e6225cdb9fb7602a22a5d68eb8930e 262 SUPERFAMILY SSF53850 2 256 2.57E-65 T 29-03-2018 AM354_RS11060 7950ee71a6ff9c53e37927c7e95fa7a0 440 ProSitePatterns PS00647 Thymidine and pyrimidine-nucleoside phosphorylases signature. 113 128 - T 29-03-2018 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM354_RS11060 7950ee71a6ff9c53e37927c7e95fa7a0 440 TIGRFAM TIGR02644 Y_phosphoryl: pyrimidine-nucleoside phosphorylase 5 423 3.0E-167 T 29-03-2018 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic GO:0006213|GO:0016154 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181|Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM354_RS11060 7950ee71a6ff9c53e37927c7e95fa7a0 440 SUPERFAMILY SSF47648 3 70 5.49E-21 T 29-03-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM354_RS11060 7950ee71a6ff9c53e37927c7e95fa7a0 440 Pfam PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain 351 423 2.0E-25 T 29-03-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM354_RS11060 7950ee71a6ff9c53e37927c7e95fa7a0 440 SUPERFAMILY SSF52418 75 334 2.09E-88 T 29-03-2018 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM354_RS11060 7950ee71a6ff9c53e37927c7e95fa7a0 440 Gene3D G3DSA:3.40.1030.10 69 341 1.0E-83 T 29-03-2018 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM354_RS11060 7950ee71a6ff9c53e37927c7e95fa7a0 440 TIGRFAM TIGR02643 T_phosphoryl: thymidine phosphorylase 2 438 4.9E-230 T 29-03-2018 IPR013465 Thymidine phosphorylase GO:0006213|GO:0009032 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 AM354_RS11060 7950ee71a6ff9c53e37927c7e95fa7a0 440 Gene3D G3DSA:1.20.970.10 2 68 1.3E-21 T 29-03-2018 AM354_RS11060 7950ee71a6ff9c53e37927c7e95fa7a0 440 Hamap MF_01628 Thymidine phosphorylase [deoA]. 2 438 47.489 T 29-03-2018 IPR013465 Thymidine phosphorylase GO:0006213|GO:0009032 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 AM354_RS11060 7950ee71a6ff9c53e37927c7e95fa7a0 440 Pfam PF00591 Glycosyl transferase family, a/b domain 79 309 3.4E-51 T 29-03-2018 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM354_RS11060 7950ee71a6ff9c53e37927c7e95fa7a0 440 Pfam PF02885 Glycosyl transferase family, helical bundle domain 6 67 2.1E-18 T 29-03-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM354_RS11060 7950ee71a6ff9c53e37927c7e95fa7a0 440 Gene3D G3DSA:3.90.1170.30 342 429 3.8E-31 T 29-03-2018 AM354_RS11060 7950ee71a6ff9c53e37927c7e95fa7a0 440 SUPERFAMILY SSF54680 337 439 1.44E-33 T 29-03-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM354_RS11060 7950ee71a6ff9c53e37927c7e95fa7a0 440 PIRSF PIRSF000478 1 439 6.0E-155 T 29-03-2018 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM354_RS11060 7950ee71a6ff9c53e37927c7e95fa7a0 440 SMART SM00941 350 424 1.1E-33 T 29-03-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM354_RS02920 85df1bf4e2ce2e7e29dc6263d1be4192 232 TIGRFAM TIGR01948 rnfE: electron transport complex, RnfABCDGE type, E subunit 6 209 9.2E-83 T 29-03-2018 IPR010968 Electron transport complex, RsxE GO:0016020|GO:0022900 AM354_RS02920 85df1bf4e2ce2e7e29dc6263d1be4192 232 Pfam PF02508 Rnf-Nqr subunit, membrane protein 6 199 1.7E-62 T 29-03-2018 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 AM354_RS02920 85df1bf4e2ce2e7e29dc6263d1be4192 232 PIRSF PIRSF006102 1 219 8.0E-77 T 29-03-2018 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 AM354_RS02920 85df1bf4e2ce2e7e29dc6263d1be4192 232 Hamap MF_00478 Electron transport complex subunit RsxE [rsxE]. 1 210 27.391 T 29-03-2018 IPR010968 Electron transport complex, RsxE GO:0016020|GO:0022900 AM354_RS20025 ea42eeeaa5b72e4ba70122a27b81180f 962 SUPERFAMILY SSF63411 266 503 8.38E-71 T 29-03-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AM354_RS20025 ea42eeeaa5b72e4ba70122a27b81180f 962 SUPERFAMILY SSF63411 35 263 3.67E-52 T 29-03-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AM354_RS20025 ea42eeeaa5b72e4ba70122a27b81180f 962 Pfam PF05193 Peptidase M16 inactive domain 683 859 9.3E-9 T 29-03-2018 IPR007863 Peptidase M16, C-terminal AM354_RS20025 ea42eeeaa5b72e4ba70122a27b81180f 962 Pfam PF05193 Peptidase M16 inactive domain 217 393 1.4E-20 T 29-03-2018 IPR007863 Peptidase M16, C-terminal AM354_RS20025 ea42eeeaa5b72e4ba70122a27b81180f 962 Gene3D G3DSA:3.30.830.10 504 722 2.1E-31 T 29-03-2018 AM354_RS20025 ea42eeeaa5b72e4ba70122a27b81180f 962 SUPERFAMILY SSF63411 505 731 5.59E-49 T 29-03-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AM354_RS20025 ea42eeeaa5b72e4ba70122a27b81180f 962 Gene3D G3DSA:3.30.830.10 723 959 4.7E-36 T 29-03-2018 AM354_RS20025 ea42eeeaa5b72e4ba70122a27b81180f 962 Pfam PF16187 Middle or third domain of peptidase_M16 401 676 2.0E-57 T 29-03-2018 IPR032632 Peptidase M16, middle/third domain AM354_RS20025 ea42eeeaa5b72e4ba70122a27b81180f 962 Pfam PF00675 Insulinase (Peptidase family M16) 56 192 6.1E-35 T 29-03-2018 IPR011765 Peptidase M16, N-terminal AM354_RS20025 ea42eeeaa5b72e4ba70122a27b81180f 962 Gene3D G3DSA:3.30.830.10 273 503 8.3E-61 T 29-03-2018 AM354_RS20025 ea42eeeaa5b72e4ba70122a27b81180f 962 Gene3D G3DSA:3.30.830.10 24 269 4.4E-71 T 29-03-2018 AM354_RS20025 ea42eeeaa5b72e4ba70122a27b81180f 962 SUPERFAMILY SSF63411 746 955 2.97E-47 T 29-03-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AM354_RS20025 ea42eeeaa5b72e4ba70122a27b81180f 962 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 76 99 - T 29-03-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 AM354_RS08820 49447f8f2fe62a10cf8a6339987c3657 183 SUPERFAMILY SSF53271 14 180 1.48E-52 T 29-03-2018 IPR029057 Phosphoribosyltransferase-like AM354_RS08820 49447f8f2fe62a10cf8a6339987c3657 183 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 11 179 5.1E-72 T 29-03-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 AM354_RS08820 49447f8f2fe62a10cf8a6339987c3657 183 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 11 180 38.415 T 29-03-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 AM354_RS08820 49447f8f2fe62a10cf8a6339987c3657 183 Gene3D G3DSA:3.40.50.2020 4 182 2.3E-41 T 29-03-2018 AM354_RS08820 49447f8f2fe62a10cf8a6339987c3657 183 Pfam PF00156 Phosphoribosyl transferase domain 31 164 5.8E-17 T 29-03-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AM354_RS14590 5f2737548af6bca51860a46bf1a11822 731 SUPERFAMILY SSF52540 502 600 2.57E-40 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS14590 5f2737548af6bca51860a46bf1a11822 731 SUPERFAMILY SSF52540 219 439 2.57E-40 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS14590 5f2737548af6bca51860a46bf1a11822 731 Pfam PF00271 Helicase conserved C-terminal domain 521 588 8.2E-6 T 29-03-2018 IPR001650 Helicase, C-terminal AM354_RS14590 5f2737548af6bca51860a46bf1a11822 731 Pfam PF00270 DEAD/DEAH box helicase 218 363 6.9E-14 T 29-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AM354_RS14590 5f2737548af6bca51860a46bf1a11822 731 SMART SM00490 491 588 6.9E-9 T 29-03-2018 IPR001650 Helicase, C-terminal AM354_RS14590 5f2737548af6bca51860a46bf1a11822 731 Hamap MF_00983 Probable primosomal protein N' [priA]. 6 731 25.821 T 29-03-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 AM354_RS14590 5f2737548af6bca51860a46bf1a11822 731 Gene3D G3DSA:3.40.50.300 399 620 6.3E-22 T 29-03-2018 AM354_RS14590 5f2737548af6bca51860a46bf1a11822 731 TIGRFAM TIGR00595 priA: primosomal protein N' 220 729 8.8E-208 T 29-03-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 AM354_RS14590 5f2737548af6bca51860a46bf1a11822 731 SMART SM00487 194 394 1.3E-17 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AM354_RS14590 5f2737548af6bca51860a46bf1a11822 731 Gene3D G3DSA:3.40.50.300 195 360 1.2E-26 T 29-03-2018 AM354_RS11030 bb586e46e2320b436dc1e0daf6362319 424 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 66 136 1.8E-19 T 29-03-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AM354_RS11030 bb586e46e2320b436dc1e0daf6362319 424 Gene3D G3DSA:1.10.260.40 5 61 6.7E-10 T 29-03-2018 AM354_RS11030 bb586e46e2320b436dc1e0daf6362319 424 SMART SM00530 6 62 2.7E-7 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM354_RS11030 bb586e46e2320b436dc1e0daf6362319 424 SUPERFAMILY SSF52540 232 405 2.35E-27 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS11030 bb586e46e2320b436dc1e0daf6362319 424 Pfam PF01381 Helix-turn-helix 11 59 2.5E-8 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM354_RS11030 bb586e46e2320b436dc1e0daf6362319 424 TIGRFAM TIGR01526 nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase 65 395 5.6E-153 T 29-03-2018 IPR006417 Nicotinamide-nucleotide adenylyltransferase GO:0003677|GO:0006355|GO:0006810|GO:0019363 KEGG: 00760+2.7.7.1+2.7.1.22 AM354_RS11030 bb586e46e2320b436dc1e0daf6362319 424 Gene3D G3DSA:3.40.50.620 63 230 6.8E-20 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS11030 bb586e46e2320b436dc1e0daf6362319 424 Pfam PF13521 AAA domain 234 394 8.0E-34 T 29-03-2018 AM354_RS11030 bb586e46e2320b436dc1e0daf6362319 424 SUPERFAMILY SSF47413 5 59 9.48E-9 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS11030 bb586e46e2320b436dc1e0daf6362319 424 PIRSF PIRSF004776 3 415 8.5E-214 T 29-03-2018 IPR016429 Bifunctional transcriptional regulator NadR GO:0045892 KEGG: 00760+2.7.7.1+2.7.1.22 AM354_RS11030 bb586e46e2320b436dc1e0daf6362319 424 Gene3D G3DSA:3.40.50.300 231 399 2.8E-16 T 29-03-2018 AM354_RS11030 bb586e46e2320b436dc1e0daf6362319 424 SUPERFAMILY SSF52374 65 223 5.9E-21 T 29-03-2018 AM354_RS14640 3536c052bbe5ccbbb4508d9324e03085 406 Gene3D G3DSA:3.90.1260.10 169 359 5.4E-84 T 29-03-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AM354_RS14640 3536c052bbe5ccbbb4508d9324e03085 406 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 122 133 - T 29-03-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AM354_RS14640 3536c052bbe5ccbbb4508d9324e03085 406 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 12 20 - T 29-03-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AM354_RS14640 3536c052bbe5ccbbb4508d9324e03085 406 TIGRFAM TIGR00032 argG: argininosuccinate synthase 8 396 3.0E-135 T 29-03-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AM354_RS14640 3536c052bbe5ccbbb4508d9324e03085 406 Gene3D G3DSA:1.20.5.470 369 402 7.7E-14 T 29-03-2018 AM354_RS14640 3536c052bbe5ccbbb4508d9324e03085 406 Gene3D G3DSA:3.40.50.620 1 168 1.7E-25 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS14640 3536c052bbe5ccbbb4508d9324e03085 406 Pfam PF00764 Arginosuccinate synthase 10 397 1.2E-143 T 29-03-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AM354_RS14640 3536c052bbe5ccbbb4508d9324e03085 406 SUPERFAMILY SSF52402 7 172 9.04E-46 T 29-03-2018 AM354_RS14640 3536c052bbe5ccbbb4508d9324e03085 406 Hamap MF_00005 Argininosuccinate synthase [argG]. 6 403 51.115 T 29-03-2018 IPR023434 Argininosuccinate synthase, type 1 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AM354_RS14640 3536c052bbe5ccbbb4508d9324e03085 406 SUPERFAMILY SSF69864 177 404 3.27E-88 T 29-03-2018 AM354_RS00460 b22cba268958314b9fb2831ffebd6e3a 306 Gene3D G3DSA:1.10.3720.10 2 294 1.2E-42 T 29-03-2018 AM354_RS00460 b22cba268958314b9fb2831ffebd6e3a 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 306 8.0E-39 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS00460 b22cba268958314b9fb2831ffebd6e3a 306 SUPERFAMILY SSF161098 89 291 1.06E-21 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS14370 d5fd290806bc1220fc14cb8685e79d79 360 Gene3D G3DSA:3.40.50.2000 178 360 2.8E-42 T 29-03-2018 AM354_RS14370 d5fd290806bc1220fc14cb8685e79d79 360 SUPERFAMILY SSF53756 15 359 2.83E-86 T 29-03-2018 AM354_RS14370 d5fd290806bc1220fc14cb8685e79d79 360 Gene3D G3DSA:3.40.50.2000 7 176 1.4E-39 T 29-03-2018 AM354_RS14370 d5fd290806bc1220fc14cb8685e79d79 360 TIGRFAM TIGR02201 heptsyl_trn_III: putative lipopolysaccharide heptosyltransferase III 16 359 1.7E-160 T 29-03-2018 IPR011916 Lipopolysaccharide heptosyltransferase III, putative AM354_RS14370 d5fd290806bc1220fc14cb8685e79d79 360 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 89 330 3.6E-49 T 29-03-2018 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 AM354_RS05840 49cb44bf524977a6535aff65b7012bd9 518 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 419 502 2.0E-19 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM354_RS05840 49cb44bf524977a6535aff65b7012bd9 518 Gene3D G3DSA:3.30.1360.60 441 516 5.3E-25 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM354_RS05840 49cb44bf524977a6535aff65b7012bd9 518 Pfam PF02378 Phosphotransferase system, EIIC 20 358 2.3E-91 T 29-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AM354_RS05840 49cb44bf524977a6535aff65b7012bd9 518 SUPERFAMILY SSF55604 444 517 6.41E-20 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM354_RS05840 49cb44bf524977a6535aff65b7012bd9 518 Pfam PF00367 phosphotransferase system, EIIB 445 474 5.3E-12 T 29-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AM354_RS05840 49cb44bf524977a6535aff65b7012bd9 518 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 456 473 - T 29-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AM354_RS14010 f6e57b5b6ac72a647b1db77b47e1773b 156 Hamap MF_01398 ATP synthase subunit b [atpF]. 1 138 13.307 T 29-03-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 AM354_RS14010 f6e57b5b6ac72a647b1db77b47e1773b 156 Pfam PF00430 ATP synthase B/B' CF(0) 6 137 8.7E-39 T 29-03-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 AM354_RS14010 f6e57b5b6ac72a647b1db77b47e1773b 156 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 10 156 4.3E-61 T 29-03-2018 IPR005864 ATP synthase, F0 complex, subunit b, bacterial GO:0015078|GO:0015986|GO:0045263 AM354_RS14010 f6e57b5b6ac72a647b1db77b47e1773b 156 SUPERFAMILY SSF81573 63 121 2.62E-15 T 29-03-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain AM354_RS14010 f6e57b5b6ac72a647b1db77b47e1773b 156 Gene3D G3DSA:1.20.5.620 62 122 2.1E-15 T 29-03-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain AM354_RS00645 f7da51ce9ddaeca75cbd32d6be92b0fd 730 Pfam PF05272 Virulence-associated protein E 423 621 1.1E-42 T 29-03-2018 IPR007936 Virulence-associated E AM354_RS00645 f7da51ce9ddaeca75cbd32d6be92b0fd 730 Pfam PF09250 Bifunctional DNA primase/polymerase, N-terminal 45 180 2.8E-8 T 29-03-2018 IPR015330 DNA primase/polymerase, bifunctional, N-terminal AM354_RS10195 8f36a5f604965acbdbfb264d5267ec6e 282 SUPERFAMILY SSF46689 228 278 8.51E-13 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS10195 8f36a5f604965acbdbfb264d5267ec6e 282 Gene3D G3DSA:2.60.120.280 13 205 2.7E-16 T 29-03-2018 AM354_RS10195 8f36a5f604965acbdbfb264d5267ec6e 282 Pfam PF07883 Cupin domain 36 83 3.7E-9 T 29-03-2018 IPR013096 Cupin 2, conserved barrel AM354_RS10195 8f36a5f604965acbdbfb264d5267ec6e 282 SMART SM00342 192 275 2.9E-22 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS10195 8f36a5f604965acbdbfb264d5267ec6e 282 Gene3D G3DSA:1.10.10.60 237 278 7.3E-9 T 29-03-2018 AM354_RS10195 8f36a5f604965acbdbfb264d5267ec6e 282 Gene3D G3DSA:1.10.10.60 206 236 0.0011 T 29-03-2018 AM354_RS10195 8f36a5f604965acbdbfb264d5267ec6e 282 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 229 271 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM354_RS10195 8f36a5f604965acbdbfb264d5267ec6e 282 Pfam PF12833 Helix-turn-helix domain 202 276 2.3E-18 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS10195 8f36a5f604965acbdbfb264d5267ec6e 282 SUPERFAMILY SSF51182 37 116 2.46E-13 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS18260 dde969da7099f46f3762d140d8c11c0e 429 Pfam PF13542 Helix-turn-helix domain of transposase family ISL3 88 136 4.7E-9 T 29-03-2018 IPR032877 Transposase IS204/IS1001/IS1096/IS1165, helix-turn-helix domain AM354_RS18260 dde969da7099f46f3762d140d8c11c0e 429 Pfam PF01610 Transposase 152 386 1.0E-60 T 29-03-2018 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain AM354_RS18260 dde969da7099f46f3762d140d8c11c0e 429 Pfam PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 35 81 1.5E-11 T 29-03-2018 IPR029261 Transposase IS204/IS1001/IS1096/IS1165, zinc-finger AM354_RS01010 4283b0db20aaa0b4f6d0ee8f0eb44aea 810 PIRSF PIRSF000379 51 810 9.7E-182 T 29-03-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 AM354_RS01010 4283b0db20aaa0b4f6d0ee8f0eb44aea 810 SUPERFAMILY SSF51998 6 809 1.01E-222 T 29-03-2018 AM354_RS01010 4283b0db20aaa0b4f6d0ee8f0eb44aea 810 Pfam PF02901 Pyruvate formate lyase-like 11 671 1.8E-205 T 29-03-2018 IPR004184 Pyruvate formate lyase domain GO:0003824 AM354_RS01010 4283b0db20aaa0b4f6d0ee8f0eb44aea 810 Gene3D G3DSA:3.20.70.20 9 810 6.9E-269 T 29-03-2018 AM354_RS01010 4283b0db20aaa0b4f6d0ee8f0eb44aea 810 TIGRFAM TIGR01774 PFL2-3: glycyl radical enzyme, PFL2/glycerol dehydratase family 9 810 0.0 T 29-03-2018 IPR010098 Glycyl radical enzyme, PFL2/glycerol dehydratase family KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 AM354_RS01010 4283b0db20aaa0b4f6d0ee8f0eb44aea 810 Pfam PF01228 Glycine radical 688 791 6.3E-29 T 29-03-2018 IPR001150 Glycine radical domain GO:0003824|GO:0008152 AM354_RS01010 4283b0db20aaa0b4f6d0ee8f0eb44aea 810 ProSitePatterns PS00850 Glycine radical domain signature. 781 789 - T 29-03-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site AM354_RS07885 bd84363e215f1beba0af5cd7d38eaefb 1066 SUPERFAMILY SSF53850 284 505 4.69E-32 T 29-03-2018 AM354_RS07885 bd84363e215f1beba0af5cd7d38eaefb 1066 SMART SM00387 682 798 1.1E-35 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS07885 bd84363e215f1beba0af5cd7d38eaefb 1066 Gene3D G3DSA:3.40.50.2300 813 930 7.3E-21 T 29-03-2018 AM354_RS07885 bd84363e215f1beba0af5cd7d38eaefb 1066 SUPERFAMILY SSF52172 820 944 4.41E-21 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS07885 bd84363e215f1beba0af5cd7d38eaefb 1066 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 683 797 6.9E-28 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS07885 bd84363e215f1beba0af5cd7d38eaefb 1066 Gene3D G3DSA:3.40.190.10 399 464 1.3E-8 T 29-03-2018 AM354_RS07885 bd84363e215f1beba0af5cd7d38eaefb 1066 SUPERFAMILY SSF47384 558 636 2.35E-16 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS07885 bd84363e215f1beba0af5cd7d38eaefb 1066 Gene3D G3DSA:1.10.287.130 563 631 1.1E-14 T 29-03-2018 AM354_RS07885 bd84363e215f1beba0af5cd7d38eaefb 1066 SUPERFAMILY SSF53850 48 263 2.28E-22 T 29-03-2018 AM354_RS07885 bd84363e215f1beba0af5cd7d38eaefb 1066 PRINTS PR00344 Bacterial sensor protein C-terminal signature 723 737 5.9E-17 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS07885 bd84363e215f1beba0af5cd7d38eaefb 1066 PRINTS PR00344 Bacterial sensor protein C-terminal signature 758 776 5.9E-17 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS07885 bd84363e215f1beba0af5cd7d38eaefb 1066 PRINTS PR00344 Bacterial sensor protein C-terminal signature 782 795 5.9E-17 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS07885 bd84363e215f1beba0af5cd7d38eaefb 1066 PRINTS PR00344 Bacterial sensor protein C-terminal signature 741 751 5.9E-17 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS07885 bd84363e215f1beba0af5cd7d38eaefb 1066 Gene3D G3DSA:1.20.120.160 931 1066 3.6E-15 T 29-03-2018 AM354_RS07885 bd84363e215f1beba0af5cd7d38eaefb 1066 SUPERFAMILY SSF47226 918 1051 2.62E-20 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM354_RS07885 bd84363e215f1beba0af5cd7d38eaefb 1066 Gene3D G3DSA:3.40.190.10 46 164 9.2E-8 T 29-03-2018 AM354_RS07885 bd84363e215f1beba0af5cd7d38eaefb 1066 SMART SM00388 573 635 2.4E-15 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS07885 bd84363e215f1beba0af5cd7d38eaefb 1066 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 297 506 9.0E-23 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM354_RS07885 bd84363e215f1beba0af5cd7d38eaefb 1066 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 51 251 2.4E-14 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM354_RS07885 bd84363e215f1beba0af5cd7d38eaefb 1066 Gene3D G3DSA:3.40.190.10 275 398 1.3E-12 T 29-03-2018 AM354_RS07885 bd84363e215f1beba0af5cd7d38eaefb 1066 Pfam PF00512 His Kinase A (phospho-acceptor) domain 573 635 2.9E-13 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS07885 bd84363e215f1beba0af5cd7d38eaefb 1066 Pfam PF00072 Response regulator receiver domain 823 933 1.5E-14 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS07885 bd84363e215f1beba0af5cd7d38eaefb 1066 SMART SM00062 49 267 3.1E-4 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM354_RS07885 bd84363e215f1beba0af5cd7d38eaefb 1066 SMART SM00062 292 509 2.0E-13 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM354_RS07885 bd84363e215f1beba0af5cd7d38eaefb 1066 SUPERFAMILY SSF55874 624 797 1.7E-42 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS07885 bd84363e215f1beba0af5cd7d38eaefb 1066 SMART SM00073 958 1054 5.0E-4 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM354_RS07885 bd84363e215f1beba0af5cd7d38eaefb 1066 SMART SM00448 819 935 3.3E-15 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS07885 bd84363e215f1beba0af5cd7d38eaefb 1066 Gene3D G3DSA:3.30.565.10 639 804 5.9E-43 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS07885 bd84363e215f1beba0af5cd7d38eaefb 1066 Pfam PF01627 Hpt domain 971 1046 7.7E-9 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM354_RS07885 bd84363e215f1beba0af5cd7d38eaefb 1066 Gene3D G3DSA:3.40.190.10 165 225 0.035 T 29-03-2018 AM354_RS03755 5007cecd9a10211b0ca39dbc4a0b1447 253 Gene3D G3DSA:3.40.50.880 4 253 2.7E-44 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS03755 5007cecd9a10211b0ca39dbc4a0b1447 253 Pfam PF07722 Peptidase C26 8 224 1.0E-65 T 29-03-2018 IPR011697 Peptidase C26 GO:0016787 Reactome: R-HSA-6798695 AM354_RS03755 5007cecd9a10211b0ca39dbc4a0b1447 253 SUPERFAMILY SSF52317 6 248 5.5E-41 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS02140 a4a307fd3891139008be564c19e57545 105 SUPERFAMILY SSF51182 8 92 2.25E-13 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS02140 a4a307fd3891139008be564c19e57545 105 Gene3D G3DSA:2.60.120.10 4 105 4.0E-11 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS09090 50bb3e52744a3846864502d1d4114e25 434 SUPERFAMILY SSF109998 248 429 4.45E-47 T 29-03-2018 IPR027304 Trigger factor/SurA domain AM354_RS09090 50bb3e52744a3846864502d1d4114e25 434 SUPERFAMILY SSF102735 1 131 6.54E-42 T 29-03-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 AM354_RS09090 50bb3e52744a3846864502d1d4114e25 434 Pfam PF05697 Bacterial trigger factor protein (TF) 1 143 6.2E-45 T 29-03-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 AM354_RS09090 50bb3e52744a3846864502d1d4114e25 434 PIRSF PIRSF003095 1 434 1.5E-133 T 29-03-2018 IPR005215 Trigger factor GO:0015031 AM354_RS09090 50bb3e52744a3846864502d1d4114e25 434 Gene3D G3DSA:3.30.70.1050 1 118 3.7E-37 T 29-03-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 AM354_RS09090 50bb3e52744a3846864502d1d4114e25 434 SUPERFAMILY SSF54534 96 241 3.93E-39 T 29-03-2018 AM354_RS09090 50bb3e52744a3846864502d1d4114e25 434 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 262 412 1.8E-40 T 29-03-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 AM354_RS09090 50bb3e52744a3846864502d1d4114e25 434 Gene3D G3DSA:1.10.3120.10 211 389 1.1E-45 T 29-03-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 AM354_RS09090 50bb3e52744a3846864502d1d4114e25 434 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 156 229 1.1E-14 T 29-03-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain AM354_RS09090 50bb3e52744a3846864502d1d4114e25 434 Hamap MF_00303 Trigger factor [tig]. 1 418 22.473 T 29-03-2018 IPR005215 Trigger factor GO:0015031 AM354_RS09090 50bb3e52744a3846864502d1d4114e25 434 TIGRFAM TIGR00115 tig: trigger factor 13 412 6.7E-146 T 29-03-2018 IPR005215 Trigger factor GO:0015031 AM354_RS13655 afffb8687956885db2b6254dd05662e6 309 Hamap MF_00611 Protein FdhE [fdhE]. 3 308 49.542 T 29-03-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 AM354_RS13655 afffb8687956885db2b6254dd05662e6 309 Gene3D G3DSA:3.90.1670.10 26 309 7.6E-101 T 29-03-2018 IPR024064 FdhE-like AM354_RS13655 afffb8687956885db2b6254dd05662e6 309 Pfam PF04216 Protein involved in formate dehydrogenase formation 23 306 2.9E-115 T 29-03-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 AM354_RS13655 afffb8687956885db2b6254dd05662e6 309 TIGRFAM TIGR01562 FdhE: formate dehydrogenase accessory protein FdhE 2 307 3.8E-125 T 29-03-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 AM354_RS13655 afffb8687956885db2b6254dd05662e6 309 SUPERFAMILY SSF144020 26 307 2.35E-96 T 29-03-2018 IPR024064 FdhE-like AM354_RS13655 afffb8687956885db2b6254dd05662e6 309 PIRSF PIRSF018296 1 309 8.3E-135 T 29-03-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 AM354_RS10080 6bf187188dee919002e6049b29f38c0e 118 Pfam PF01245 Ribosomal protein L19 3 113 1.2E-49 T 29-03-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS10080 6bf187188dee919002e6049b29f38c0e 118 ProSitePatterns PS01015 Ribosomal protein L19 signature. 86 101 - T 29-03-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS10080 6bf187188dee919002e6049b29f38c0e 118 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 2 114 30.441 T 29-03-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS10080 6bf187188dee919002e6049b29f38c0e 118 PRINTS PR00061 Ribosomal protein L19 signature 34 63 9.8E-43 T 29-03-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS10080 6bf187188dee919002e6049b29f38c0e 118 PRINTS PR00061 Ribosomal protein L19 signature 4 33 9.8E-43 T 29-03-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS10080 6bf187188dee919002e6049b29f38c0e 118 PRINTS PR00061 Ribosomal protein L19 signature 88 113 9.8E-43 T 29-03-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS10080 6bf187188dee919002e6049b29f38c0e 118 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 3 113 8.7E-53 T 29-03-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS10080 6bf187188dee919002e6049b29f38c0e 118 PIRSF PIRSF002191 1 118 3.9E-50 T 29-03-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS10080 6bf187188dee919002e6049b29f38c0e 118 SUPERFAMILY SSF50104 2 115 1.2E-47 T 29-03-2018 IPR008991 Translation protein SH3-like domain AM354_RS19865 d84b70c1de1dadbca1c82aa7566e1216 427 PIRSF PIRSF009264 1 427 5.0E-191 T 29-03-2018 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 AM354_RS19865 d84b70c1de1dadbca1c82aa7566e1216 427 TIGRFAM TIGR02810 agaZ_gatZ: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit 6 422 3.5E-206 T 29-03-2018 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 AM354_RS19865 d84b70c1de1dadbca1c82aa7566e1216 427 Gene3D G3DSA:3.20.20.70 4 293 3.4E-66 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS19865 d84b70c1de1dadbca1c82aa7566e1216 427 SUPERFAMILY SSF51569 5 422 2.01E-167 T 29-03-2018 AM354_RS19865 d84b70c1de1dadbca1c82aa7566e1216 427 Gene3D G3DSA:1.10.400.20 294 407 2.1E-45 T 29-03-2018 AM354_RS19865 d84b70c1de1dadbca1c82aa7566e1216 427 Pfam PF08013 Tagatose 6 phosphate kinase 4 422 9.3E-200 T 29-03-2018 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 AM354_RS10405 2d217af744302302cd6944d4f0fed5ff 743 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 64 739 2.4E-187 T 29-03-2018 IPR004811 RelA/SpoT family GO:0015969 AM354_RS10405 2d217af744302302cd6944d4f0fed5ff 743 SUPERFAMILY SSF109604 27 207 2.26E-46 T 29-03-2018 AM354_RS10405 2d217af744302302cd6944d4f0fed5ff 743 Pfam PF04607 Region found in RelA / SpoT proteins 251 360 2.2E-36 T 29-03-2018 IPR007685 RelA/SpoT GO:0015969 AM354_RS10405 2d217af744302302cd6944d4f0fed5ff 743 Gene3D G3DSA:3.10.20.30 399 474 7.4E-25 T 29-03-2018 IPR012675 Beta-grasp domain AM354_RS10405 2d217af744302302cd6944d4f0fed5ff 743 SUPERFAMILY SSF81271 398 464 6.05E-22 T 29-03-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 AM354_RS10405 2d217af744302302cd6944d4f0fed5ff 743 SUPERFAMILY SSF81301 196 409 8.01E-64 T 29-03-2018 AM354_RS10405 2d217af744302302cd6944d4f0fed5ff 743 SMART SM00954 251 361 6.2E-66 T 29-03-2018 IPR007685 RelA/SpoT GO:0015969 AM354_RS10405 2d217af744302302cd6944d4f0fed5ff 743 SUPERFAMILY SSF55021 664 740 1.34E-14 T 29-03-2018 AM354_RS10405 2d217af744302302cd6944d4f0fed5ff 743 Pfam PF02824 TGS domain 405 464 5.5E-21 T 29-03-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 AM354_RS10405 2d217af744302302cd6944d4f0fed5ff 743 Pfam PF13291 ACT domain 663 739 1.9E-18 T 29-03-2018 IPR002912 ACT domain AM354_RS10405 2d217af744302302cd6944d4f0fed5ff 743 Gene3D G3DSA:3.30.460.10 208 341 2.2E-43 T 29-03-2018 AM354_RS10405 2d217af744302302cd6944d4f0fed5ff 743 Gene3D G3DSA:3.30.70.260 658 740 1.4E-12 T 29-03-2018 AM354_RS10405 2d217af744302302cd6944d4f0fed5ff 743 Pfam PF13328 HD domain 46 191 1.5E-42 T 29-03-2018 IPR003607 HD/PDEase domain AM354_RS25465 f3c249f2b6131e66150052da4994eecf 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 3.3E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS25465 f3c249f2b6131e66150052da4994eecf 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 3.3E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS25465 f3c249f2b6131e66150052da4994eecf 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 3.3E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS25465 f3c249f2b6131e66150052da4994eecf 306 Gene3D G3DSA:1.10.10.10 1 88 1.4E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS25465 f3c249f2b6131e66150052da4994eecf 306 SUPERFAMILY SSF53850 90 297 2.17E-40 T 29-03-2018 AM354_RS25465 f3c249f2b6131e66150052da4994eecf 306 Pfam PF03466 LysR substrate binding domain 90 294 8.4E-39 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS25465 f3c249f2b6131e66150052da4994eecf 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 1.6E-19 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS25465 f3c249f2b6131e66150052da4994eecf 306 Gene3D G3DSA:3.40.190.10 179 264 6.3E-24 T 29-03-2018 AM354_RS25465 f3c249f2b6131e66150052da4994eecf 306 Gene3D G3DSA:3.40.190.10 93 178 7.9E-13 T 29-03-2018 AM354_RS25465 f3c249f2b6131e66150052da4994eecf 306 SUPERFAMILY SSF46785 4 112 4.47E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS22120 873ab82f998d7d3f8739687d59260f7b 143 SUPERFAMILY SSF55729 12 127 1.89E-22 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS22120 873ab82f998d7d3f8739687d59260f7b 143 Gene3D G3DSA:3.40.630.30 2 132 4.6E-18 T 29-03-2018 AM354_RS22120 873ab82f998d7d3f8739687d59260f7b 143 Pfam PF13673 Acetyltransferase (GNAT) domain 32 135 4.8E-13 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS03485 f1067f22835a61a9db9c173c74906c63 289 Gene3D G3DSA:3.30.200.20 1 90 4.8E-21 T 29-03-2018 AM354_RS03485 f1067f22835a61a9db9c173c74906c63 289 PIRSF PIRSF006221 1 287 1.2E-90 T 29-03-2018 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 AM354_RS03485 f1067f22835a61a9db9c173c74906c63 289 SUPERFAMILY SSF56112 3 286 4.72E-39 T 29-03-2018 IPR011009 Protein kinase-like domain AM354_RS03485 f1067f22835a61a9db9c173c74906c63 289 Gene3D G3DSA:3.90.1200.10 91 279 8.3E-14 T 29-03-2018 AM354_RS03485 f1067f22835a61a9db9c173c74906c63 289 Pfam PF03881 Fructosamine kinase 1 285 6.3E-116 T 29-03-2018 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 AM354_RS20285 23db3364c154754f330f74ddb35d411f 712 SUPERFAMILY SSF53383 130 562 1.14E-105 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS20285 23db3364c154754f330f74ddb35d411f 712 Gene3D G3DSA:3.40.640.10 130 424 9.2E-34 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS20285 23db3364c154754f330f74ddb35d411f 712 Gene3D G3DSA:3.90.1150.10 425 594 4.8E-55 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS20285 23db3364c154754f330f74ddb35d411f 712 SUPERFAMILY SSF55904 567 708 1.27E-44 T 29-03-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 AM354_RS20285 23db3364c154754f330f74ddb35d411f 712 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 362 376 - T 29-03-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 AM354_RS20285 23db3364c154754f330f74ddb35d411f 712 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 570 700 3.1E-46 T 29-03-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 AM354_RS20285 23db3364c154754f330f74ddb35d411f 712 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 14 124 3.5E-27 T 29-03-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 AM354_RS20285 23db3364c154754f330f74ddb35d411f 712 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 130 545 1.4E-196 T 29-03-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 AM354_RS20285 23db3364c154754f330f74ddb35d411f 712 PIRSF PIRSF009393 1 712 3.2E-284 T 29-03-2018 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 AM354_RS20285 23db3364c154754f330f74ddb35d411f 712 Gene3D G3DSA:3.90.100.10 595 712 9.8E-37 T 29-03-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 AM354_RS07740 454c7027812163cf6b7035fcb72dc162 381 Gene3D G3DSA:3.40.640.10 73 279 4.5E-46 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS07740 454c7027812163cf6b7035fcb72dc162 381 TIGRFAM TIGR00858 bioF: 8-amino-7-oxononanoate synthase 20 377 9.4E-137 T 29-03-2018 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 AM354_RS07740 454c7027812163cf6b7035fcb72dc162 381 Pfam PF00155 Aminotransferase class I and II 42 376 1.2E-56 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM354_RS07740 454c7027812163cf6b7035fcb72dc162 381 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 233 242 - T 29-03-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 AM354_RS07740 454c7027812163cf6b7035fcb72dc162 381 Hamap MF_01693 8-amino-7-oxononanoate synthase [bioF]. 3 380 51.152 T 29-03-2018 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 AM354_RS07740 454c7027812163cf6b7035fcb72dc162 381 SUPERFAMILY SSF53383 3 379 3.3E-104 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS07740 454c7027812163cf6b7035fcb72dc162 381 Gene3D G3DSA:3.90.1150.10 280 381 1.0E-28 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS00665 ed0c536a2b82030314dbc180d7b52f2f 203 Pfam PF00182 Chitinase class I 112 168 5.4E-8 T 29-03-2018 IPR000726 Glycoside hydrolase, family 19, catalytic GO:0004568|GO:0006032|GO:0016998 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 AM354_RS00665 ed0c536a2b82030314dbc180d7b52f2f 203 SUPERFAMILY SSF53955 7 202 7.59E-39 T 29-03-2018 IPR023346 Lysozyme-like domain AM354_RS00665 ed0c536a2b82030314dbc180d7b52f2f 203 Gene3D G3DSA:3.30.20.10 93 149 2.2E-15 T 29-03-2018 AM354_RS21945 29c5f4df5850148bb9721297fea8ddf2 183 Gene3D G3DSA:3.40.630.30 5 173 2.9E-32 T 29-03-2018 AM354_RS21945 29c5f4df5850148bb9721297fea8ddf2 183 SUPERFAMILY SSF55729 4 164 1.62E-40 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS21945 29c5f4df5850148bb9721297fea8ddf2 183 Pfam PF13302 Acetyltransferase (GNAT) domain 7 141 4.5E-22 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS15275 1c8c5cc6563631b6c73da80fff42f052 321 Gene3D G3DSA:1.10.287.470 99 156 6.7E-10 T 29-03-2018 AM354_RS15275 1c8c5cc6563631b6c73da80fff42f052 321 SUPERFAMILY SSF111369 98 156 4.84E-6 T 29-03-2018 AM354_RS15275 1c8c5cc6563631b6c73da80fff42f052 321 SUPERFAMILY SSF111369 164 248 9.81E-15 T 29-03-2018 AM354_RS15275 1c8c5cc6563631b6c73da80fff42f052 321 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 25 271 1.7E-17 T 29-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AM354_RS15275 1c8c5cc6563631b6c73da80fff42f052 321 Gene3D G3DSA:1.20.1600.10 160 317 5.9E-22 T 29-03-2018 AM354_RS15275 1c8c5cc6563631b6c73da80fff42f052 321 SUPERFAMILY SSF111369 27 94 1.7E-7 T 29-03-2018 AM354_RS15275 1c8c5cc6563631b6c73da80fff42f052 321 Pfam PF00529 HlyD membrane-fusion protein of T1SS 5 318 1.9E-8 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AM354_RS15275 1c8c5cc6563631b6c73da80fff42f052 321 Gene3D G3DSA:2.40.50.100 29 98 1.4E-13 T 29-03-2018 AM354_RS02050 f2d6100227602c509d83e4091aa1969f 152 Pfam PF04073 Aminoacyl-tRNA editing domain 24 140 2.9E-26 T 29-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AM354_RS02050 f2d6100227602c509d83e4091aa1969f 152 Gene3D G3DSA:3.90.960.10 1 152 2.0E-38 T 29-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AM354_RS02050 f2d6100227602c509d83e4091aa1969f 152 SUPERFAMILY SSF55826 4 151 2.88E-38 T 29-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AM354_RS15885 51318f63a08cf88221a005436ade89d9 255 SUPERFAMILY SSF52540 1 213 1.23E-67 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS15885 51318f63a08cf88221a005436ade89d9 255 Gene3D G3DSA:3.40.50.300 1 225 1.9E-62 T 29-03-2018 AM354_RS15885 51318f63a08cf88221a005436ade89d9 255 SMART SM00382 26 215 1.6E-19 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS15885 51318f63a08cf88221a005436ade89d9 255 Pfam PF00005 ABC transporter 17 156 1.6E-32 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS15885 51318f63a08cf88221a005436ade89d9 255 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS01265 b35130d87fc0a9e6a26b3e6e3b5a2499 324 Gene3D G3DSA:3.20.20.120 117 320 1.2E-44 T 29-03-2018 IPR029065 Enolase C-terminal domain-like AM354_RS01265 b35130d87fc0a9e6a26b3e6e3b5a2499 324 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 173 204 - T 29-03-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 AM354_RS01265 b35130d87fc0a9e6a26b3e6e3b5a2499 324 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 3 109 1.0E-19 T 29-03-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain AM354_RS01265 b35130d87fc0a9e6a26b3e6e3b5a2499 324 Pfam PF13378 Enolase C-terminal domain-like 134 295 9.1E-28 T 29-03-2018 IPR029065 Enolase C-terminal domain-like AM354_RS01265 b35130d87fc0a9e6a26b3e6e3b5a2499 324 SUPERFAMILY SSF51604 118 317 4.19E-54 T 29-03-2018 IPR029065 Enolase C-terminal domain-like AM354_RS01265 b35130d87fc0a9e6a26b3e6e3b5a2499 324 SMART SM00922 130 223 2.0E-21 T 29-03-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AM354_RS01265 b35130d87fc0a9e6a26b3e6e3b5a2499 324 SUPERFAMILY SSF54826 2 112 1.55E-31 T 29-03-2018 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM354_RS01265 b35130d87fc0a9e6a26b3e6e3b5a2499 324 Gene3D G3DSA:3.30.390.10 1 116 8.0E-27 T 29-03-2018 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM354_RS13590 08bb5a56ce6755fbcc2d2ca077081f75 462 Gene3D G3DSA:3.20.20.140 126 408 6.5E-28 T 29-03-2018 AM354_RS13590 08bb5a56ce6755fbcc2d2ca077081f75 462 SUPERFAMILY SSF51556 118 425 1.95E-71 T 29-03-2018 IPR032466 Metal-dependent hydrolase AM354_RS13590 08bb5a56ce6755fbcc2d2ca077081f75 462 Pfam PF07969 Amidohydrolase family 165 455 1.3E-9 T 29-03-2018 IPR013108 Amidohydrolase 3 AM354_RS13590 08bb5a56ce6755fbcc2d2ca077081f75 462 SUPERFAMILY SSF51338 83 125 2.41E-7 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM354_RS13590 08bb5a56ce6755fbcc2d2ca077081f75 462 Gene3D G3DSA:2.30.40.10 50 125 1.3E-9 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM354_RS15775 76c832f8d39dc03b603b2352a4794fe0 394 SUPERFAMILY SSF103473 5 389 5.49E-39 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS15775 76c832f8d39dc03b603b2352a4794fe0 394 Hamap MF_01044 Protein TsgA [tsgA]. 1 390 28.705 T 29-03-2018 IPR023528 Major facilitator superfamily transporter, TsgA AM354_RS15775 76c832f8d39dc03b603b2352a4794fe0 394 Pfam PF07690 Major Facilitator Superfamily 14 321 2.0E-21 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS15775 76c832f8d39dc03b603b2352a4794fe0 394 Gene3D G3DSA:1.20.1250.20 203 388 5.8E-11 T 29-03-2018 AM354_RS15775 76c832f8d39dc03b603b2352a4794fe0 394 Gene3D G3DSA:1.20.1250.20 3 186 5.8E-19 T 29-03-2018 AM354_RS24940 3858d093be1e6e0fecd4f354ddb6fc74 327 SUPERFAMILY SSF46689 263 313 7.39E-11 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS24940 3858d093be1e6e0fecd4f354ddb6fc74 327 SUPERFAMILY SSF46689 213 259 6.45E-7 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS24940 3858d093be1e6e0fecd4f354ddb6fc74 327 SMART SM00342 226 309 5.2E-26 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS24940 3858d093be1e6e0fecd4f354ddb6fc74 327 Gene3D G3DSA:3.40.50.880 1 226 1.2E-56 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS24940 3858d093be1e6e0fecd4f354ddb6fc74 327 Pfam PF12833 Helix-turn-helix domain 232 310 4.0E-20 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS24940 3858d093be1e6e0fecd4f354ddb6fc74 327 Pfam PF01965 DJ-1/PfpI family 1 170 3.2E-14 T 29-03-2018 IPR002818 DJ-1/PfpI AM354_RS24940 3858d093be1e6e0fecd4f354ddb6fc74 327 SUPERFAMILY SSF52317 1 191 7.05E-46 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS24940 3858d093be1e6e0fecd4f354ddb6fc74 327 Gene3D G3DSA:1.10.10.60 227 258 1.4E-8 T 29-03-2018 AM354_RS24940 3858d093be1e6e0fecd4f354ddb6fc74 327 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 263 305 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM354_RS24940 3858d093be1e6e0fecd4f354ddb6fc74 327 Gene3D G3DSA:1.10.10.60 259 318 7.5E-14 T 29-03-2018 AM354_RS08450 1ef345ea15edcfa5b67a393195954962 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 74 271 2.8E-14 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS08450 1ef345ea15edcfa5b67a393195954962 295 Gene3D G3DSA:1.10.3720.10 11 278 1.2E-39 T 29-03-2018 AM354_RS08450 1ef345ea15edcfa5b67a393195954962 295 SUPERFAMILY SSF161098 53 259 4.32E-35 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS19760 fe3b3cef716b13cfdb289251180b4183 221 Gene3D G3DSA:3.40.30.10 44 215 2.5E-21 T 29-03-2018 AM354_RS19760 fe3b3cef716b13cfdb289251180b4183 221 SUPERFAMILY SSF52833 51 199 1.86E-23 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS19760 fe3b3cef716b13cfdb289251180b4183 221 Pfam PF01323 DSBA-like thioredoxin domain 91 193 9.8E-9 T 29-03-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590 AM354_RS12240 882b66af87b207e48475f41f68e8a05c 105 TIGRFAM TIGR04418 PriB_gamma: primosomal replication protein PriB 4 100 9.6E-38 T 29-03-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 AM354_RS12240 882b66af87b207e48475f41f68e8a05c 105 Hamap MF_00720 Primosomal replication protein N [priB]. 3 101 24.638 T 29-03-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 AM354_RS12240 882b66af87b207e48475f41f68e8a05c 105 PIRSF PIRSF003135 1 102 1.3E-50 T 29-03-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 AM354_RS12240 882b66af87b207e48475f41f68e8a05c 105 Gene3D G3DSA:2.40.50.140 3 105 7.9E-14 T 29-03-2018 AM354_RS12240 882b66af87b207e48475f41f68e8a05c 105 Pfam PF00436 Single-strand binding protein family 4 83 3.3E-14 T 29-03-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 AM354_RS12240 882b66af87b207e48475f41f68e8a05c 105 SUPERFAMILY SSF50249 3 104 1.58E-31 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS14150 b60429c82a5426052fa53861e79a15cb 207 Pfam PF01323 DSBA-like thioredoxin domain 40 186 7.4E-29 T 29-03-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590 AM354_RS14150 b60429c82a5426052fa53861e79a15cb 207 PIRSF PIRSF001488 1 207 1.1E-88 T 29-03-2018 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL AM354_RS14150 b60429c82a5426052fa53861e79a15cb 207 Gene3D G3DSA:3.40.30.10 17 207 2.1E-35 T 29-03-2018 AM354_RS14150 b60429c82a5426052fa53861e79a15cb 207 SUPERFAMILY SSF52833 20 203 1.47E-46 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS14150 b60429c82a5426052fa53861e79a15cb 207 ProSitePatterns PS00194 Thioredoxin family active site. 41 59 - T 29-03-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AM354_RS10330 1c8826e76e5ce2b4aa1e3ef6c0ad7378 244 TIGRFAM TIGR02057 PAPS_reductase: phosphoadenosine phosphosulfate reductase 21 242 4.7E-96 T 29-03-2018 IPR011800 Phosphoadenosine phosphosulphate reductase CysH GO:0004604|GO:0019379 KEGG: 00920+1.8.4.8 AM354_RS10330 1c8826e76e5ce2b4aa1e3ef6c0ad7378 244 PIRSF PIRSF000857 7 244 1.0E-55 T 29-03-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 AM354_RS10330 1c8826e76e5ce2b4aa1e3ef6c0ad7378 244 SUPERFAMILY SSF52402 21 208 4.95E-53 T 29-03-2018 AM354_RS10330 1c8826e76e5ce2b4aa1e3ef6c0ad7378 244 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 48 219 1.9E-49 T 29-03-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 Reactome: R-HSA-196843 AM354_RS10330 1c8826e76e5ce2b4aa1e3ef6c0ad7378 244 TIGRFAM TIGR00434 cysH: phosophoadenylyl-sulfate reductase 33 243 1.4E-90 T 29-03-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 AM354_RS10330 1c8826e76e5ce2b4aa1e3ef6c0ad7378 244 Gene3D G3DSA:3.40.50.620 2 216 1.5E-38 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS10330 1c8826e76e5ce2b4aa1e3ef6c0ad7378 244 Hamap MF_00063 Phosphoadenosine phosphosulfate reductase [cysH]. 9 243 39.788 T 29-03-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 AM354_RS18170 0b8c354f52313f5ed9e3efe31d241986 251 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 104 121 - T 29-03-2018 IPR018046 Pili assembly chaperone, conserved site AM354_RS18170 0b8c354f52313f5ed9e3efe31d241986 251 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 170 231 1.1E-15 T 29-03-2018 IPR016148 Pili assembly chaperone, C-terminal AM354_RS18170 0b8c354f52313f5ed9e3efe31d241986 251 SUPERFAMILY SSF49354 29 146 4.97E-37 T 29-03-2018 IPR008962 PapD-like AM354_RS18170 0b8c354f52313f5ed9e3efe31d241986 251 PRINTS PR00969 Pili chaperone signature 128 143 3.7E-33 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS18170 0b8c354f52313f5ed9e3efe31d241986 251 PRINTS PR00969 Pili chaperone signature 75 96 3.7E-33 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS18170 0b8c354f52313f5ed9e3efe31d241986 251 PRINTS PR00969 Pili chaperone signature 165 180 3.7E-33 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS18170 0b8c354f52313f5ed9e3efe31d241986 251 PRINTS PR00969 Pili chaperone signature 105 122 3.7E-33 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS18170 0b8c354f52313f5ed9e3efe31d241986 251 PRINTS PR00969 Pili chaperone signature 29 38 3.7E-33 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS18170 0b8c354f52313f5ed9e3efe31d241986 251 Gene3D G3DSA:2.60.40.10 150 243 1.8E-23 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS18170 0b8c354f52313f5ed9e3efe31d241986 251 Gene3D G3DSA:2.60.40.10 28 147 5.2E-34 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS18170 0b8c354f52313f5ed9e3efe31d241986 251 SUPERFAMILY SSF49584 154 244 1.44E-24 T 29-03-2018 IPR016148 Pili assembly chaperone, C-terminal AM354_RS18170 0b8c354f52313f5ed9e3efe31d241986 251 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 29 146 2.9E-36 T 29-03-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 AM354_RS07555 dd125c205df906b849c75b3af856d3be 314 SUPERFAMILY SSF46689 208 256 3.81E-8 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS07555 dd125c205df906b849c75b3af856d3be 314 Gene3D G3DSA:1.10.10.60 210 263 2.1E-13 T 29-03-2018 AM354_RS07555 dd125c205df906b849c75b3af856d3be 314 SMART SM00342 225 308 2.7E-26 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS07555 dd125c205df906b849c75b3af856d3be 314 Gene3D G3DSA:3.40.50.880 1 209 1.4E-61 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS07555 dd125c205df906b849c75b3af856d3be 314 Gene3D G3DSA:1.10.10.60 264 313 1.1E-9 T 29-03-2018 AM354_RS07555 dd125c205df906b849c75b3af856d3be 314 SUPERFAMILY SSF46689 261 309 1.93E-8 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS07555 dd125c205df906b849c75b3af856d3be 314 SUPERFAMILY SSF52317 1 191 1.81E-50 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS07555 dd125c205df906b849c75b3af856d3be 314 Pfam PF12833 Helix-turn-helix domain 231 309 2.1E-21 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS07555 dd125c205df906b849c75b3af856d3be 314 Pfam PF01965 DJ-1/PfpI family 3 170 3.8E-23 T 29-03-2018 IPR002818 DJ-1/PfpI AM354_RS14495 4ae1da8eff4264057f2c2747ed461bfd 300 Pfam PF16916 Dimerisation domain of Zinc Transporter 210 287 3.2E-27 T 29-03-2018 IPR027470 Cation efflux protein, cytoplasmic domain AM354_RS14495 4ae1da8eff4264057f2c2747ed461bfd 300 Pfam PF01545 Cation efflux family 15 206 4.9E-43 T 29-03-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AM354_RS14495 4ae1da8eff4264057f2c2747ed461bfd 300 SUPERFAMILY SSF161111 8 207 1.44E-49 T 29-03-2018 AM354_RS14495 4ae1da8eff4264057f2c2747ed461bfd 300 SUPERFAMILY SSF160240 209 288 9.42E-26 T 29-03-2018 AM354_RS14495 4ae1da8eff4264057f2c2747ed461bfd 300 Hamap MF_01425 Ferrous-iron efflux pump FieF [fieF]. 1 300 60.79 T 29-03-2018 IPR023783 Cation efflux pump FieF GO:0006829|GO:0015684|GO:0016021|GO:0046873 AM354_RS14495 4ae1da8eff4264057f2c2747ed461bfd 300 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 10 288 4.3E-76 T 29-03-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AM354_RS14495 4ae1da8eff4264057f2c2747ed461bfd 300 Gene3D G3DSA:1.20.1510.10 8 206 1.0E-38 T 29-03-2018 AM354_RS14495 4ae1da8eff4264057f2c2747ed461bfd 300 Gene3D G3DSA:3.30.70.1350 207 290 6.6E-26 T 29-03-2018 IPR027470 Cation efflux protein, cytoplasmic domain AM354_RS07090 03319d43f57646b629811fe10d3694b6 281 ProSitePatterns PS00683 Rhodanese C-terminal signature. 259 269 - T 29-03-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 AM354_RS07090 03319d43f57646b629811fe10d3694b6 281 SUPERFAMILY SSF52821 1 154 7.07E-42 T 29-03-2018 IPR001763 Rhodanese-like domain AM354_RS07090 03319d43f57646b629811fe10d3694b6 281 SMART SM00450 156 275 1.4E-15 T 29-03-2018 IPR001763 Rhodanese-like domain AM354_RS07090 03319d43f57646b629811fe10d3694b6 281 SMART SM00450 7 133 1.3E-23 T 29-03-2018 IPR001763 Rhodanese-like domain AM354_RS07090 03319d43f57646b629811fe10d3694b6 281 SUPERFAMILY SSF52821 168 273 3.8E-31 T 29-03-2018 IPR001763 Rhodanese-like domain AM354_RS07090 03319d43f57646b629811fe10d3694b6 281 ProSitePatterns PS00380 Rhodanese signature 1. 43 54 - T 29-03-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 AM354_RS07090 03319d43f57646b629811fe10d3694b6 281 Pfam PF00581 Rhodanese-like domain 8 129 9.1E-19 T 29-03-2018 IPR001763 Rhodanese-like domain AM354_RS07090 03319d43f57646b629811fe10d3694b6 281 Pfam PF00581 Rhodanese-like domain 160 270 4.9E-13 T 29-03-2018 IPR001763 Rhodanese-like domain AM354_RS07090 03319d43f57646b629811fe10d3694b6 281 Gene3D G3DSA:3.40.250.10 156 281 1.2E-24 T 29-03-2018 IPR001763 Rhodanese-like domain AM354_RS07090 03319d43f57646b629811fe10d3694b6 281 Gene3D G3DSA:3.40.250.10 1 155 8.1E-36 T 29-03-2018 IPR001763 Rhodanese-like domain AM354_RS08860 61282a74c08ef00aeaa7fc8e00fc3b2d 84 Pfam PF01197 Ribosomal protein L31 1 78 2.8E-22 T 29-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS08860 61282a74c08ef00aeaa7fc8e00fc3b2d 84 Hamap MF_00502 50S ribosomal protein L31 type B [rpmE2]. 1 80 26.06 T 29-03-2018 IPR027493 Ribosomal protein L31 type B GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS08860 61282a74c08ef00aeaa7fc8e00fc3b2d 84 SUPERFAMILY SSF143800 1 80 1.14E-20 T 29-03-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS08860 61282a74c08ef00aeaa7fc8e00fc3b2d 84 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 79 1.6E-16 T 29-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS08860 61282a74c08ef00aeaa7fc8e00fc3b2d 84 PRINTS PR01249 Ribosomal protein L31 signature 2 19 1.0E-13 T 29-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS08860 61282a74c08ef00aeaa7fc8e00fc3b2d 84 PRINTS PR01249 Ribosomal protein L31 signature 59 77 1.0E-13 T 29-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS08860 61282a74c08ef00aeaa7fc8e00fc3b2d 84 PRINTS PR01249 Ribosomal protein L31 signature 44 59 1.0E-13 T 29-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS15680 28bdccf01947d681fbce5ae96b53273d 277 SUPERFAMILY SSF53067 59 165 2.33E-5 T 29-03-2018 AM354_RS15680 28bdccf01947d681fbce5ae96b53273d 277 Gene3D G3DSA:3.30.420.40 4 161 1.8E-8 T 29-03-2018 AM354_RS15680 28bdccf01947d681fbce5ae96b53273d 277 Pfam PF11104 Type IV pilus assembly protein PilM; 9 167 5.8E-12 T 29-03-2018 IPR005883 Type IV pilus assembly protein PilM AM354_RS01390 2bf37d055cd06341a64cd77eeecca7c4 270 Pfam PF00089 Trypsin 45 240 7.9E-14 T 29-03-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 AM354_RS01390 2bf37d055cd06341a64cd77eeecca7c4 270 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 76 81 - T 29-03-2018 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 AM354_RS01390 2bf37d055cd06341a64cd77eeecca7c4 270 SMART SM00020 40 266 7.8E-4 T 29-03-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 AM354_RS01390 2bf37d055cd06341a64cd77eeecca7c4 270 ProSitePatterns PS00135 Serine proteases, trypsin family, serine active site. 213 224 - T 29-03-2018 IPR033116 Serine proteases, trypsin family, serine active site AM354_RS01390 2bf37d055cd06341a64cd77eeecca7c4 270 PRINTS PR00839 V8 serine protease family signature 65 82 3.3E-6 T 29-03-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 AM354_RS01390 2bf37d055cd06341a64cd77eeecca7c4 270 PRINTS PR00839 V8 serine protease family signature 40 57 3.3E-6 T 29-03-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 AM354_RS01390 2bf37d055cd06341a64cd77eeecca7c4 270 SUPERFAMILY SSF50494 14 258 1.3E-29 T 29-03-2018 IPR009003 Peptidase S1, PA clan AM354_RS01390 2bf37d055cd06341a64cd77eeecca7c4 270 Gene3D G3DSA:2.40.10.10 197 261 3.8E-9 T 29-03-2018 AM354_RS01390 2bf37d055cd06341a64cd77eeecca7c4 270 Gene3D G3DSA:2.40.10.10 75 196 1.9E-8 T 29-03-2018 AM354_RS01390 2bf37d055cd06341a64cd77eeecca7c4 270 Gene3D G3DSA:2.40.10.10 42 74 1.7E-7 T 29-03-2018 AM354_RS11215 83217fc99195c3f7ec3845f9e8413eca 380 SUPERFAMILY SSF56601 31 358 2.58E-66 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM354_RS11215 83217fc99195c3f7ec3845f9e8413eca 380 Gene3D G3DSA:3.40.710.10 25 377 2.0E-68 T 29-03-2018 AM354_RS11215 83217fc99195c3f7ec3845f9e8413eca 380 Pfam PF00144 Beta-lactamase 38 357 3.9E-62 T 29-03-2018 IPR001466 Beta-lactamase-related AM354_RS04290 cfff29f36602d6ae64d5514898ed82f4 234 TIGRFAM TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein 6 225 7.3E-109 T 29-03-2018 IPR011924 Lipoprotein releasing system, ATP-binding protein GO:0005524|GO:0006810|GO:0016020 AM354_RS04290 cfff29f36602d6ae64d5514898ed82f4 234 SUPERFAMILY SSF52540 6 226 7.53E-68 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS04290 cfff29f36602d6ae64d5514898ed82f4 234 SMART SM00382 35 223 1.4E-13 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS04290 cfff29f36602d6ae64d5514898ed82f4 234 Gene3D G3DSA:3.40.50.300 2 232 2.4E-62 T 29-03-2018 AM354_RS04290 cfff29f36602d6ae64d5514898ed82f4 234 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS04290 cfff29f36602d6ae64d5514898ed82f4 234 Pfam PF00005 ABC transporter 26 174 1.0E-35 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS00710 8c243b4cdd8f399cbbdba34c42e9c194 429 ProDom PD140702 CAPSID COAT GP5 DIRECT LATE STRUCTURAL SEQUENCING 2 429 0.0 T 29-03-2018 AM354_RS00710 8c243b4cdd8f399cbbdba34c42e9c194 429 Pfam PF11651 P22 coat protein - gene protein 5 1 425 6.4E-138 T 29-03-2018 IPR024659 Major capsid protein Gp5 AM354_RS19585 ca4ab382132a7a90e6959587acf6d326 224 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 23 224 2.8E-73 T 29-03-2018 IPR005744 Hly-III GO:0016021|GO:0019835 AM354_RS19585 ca4ab382132a7a90e6959587acf6d326 224 Pfam PF03006 Haemolysin-III related 20 217 3.5E-40 T 29-03-2018 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 AM354_RS21920 27f0a040c496c56f5379d0b04fc5c604 1993 Gene3D G3DSA:2.160.20.10 567 696 0.017 T 29-03-2018 IPR012334 Pectin lyase fold AM354_RS21920 27f0a040c496c56f5379d0b04fc5c604 1993 Gene3D G3DSA:2.160.20.10 313 529 0.0042 T 29-03-2018 IPR012334 Pectin lyase fold AM354_RS21920 27f0a040c496c56f5379d0b04fc5c604 1993 Gene3D G3DSA:2.160.20.10 32 312 7.5E-61 T 29-03-2018 IPR012334 Pectin lyase fold AM354_RS21920 27f0a040c496c56f5379d0b04fc5c604 1993 SUPERFAMILY SSF51126 41 294 1.79E-61 T 29-03-2018 IPR011050 Pectin lyase fold/virulence factor AM354_RS21920 27f0a040c496c56f5379d0b04fc5c604 1993 Pfam PF05860 haemagglutination activity domain 37 168 1.6E-34 T 29-03-2018 IPR008638 Filamentous haemagglutinin, N-terminal AM354_RS21920 27f0a040c496c56f5379d0b04fc5c604 1993 Gene3D G3DSA:3.30.305.10 1039 1146 2.1E-31 T 29-03-2018 AM354_RS21920 27f0a040c496c56f5379d0b04fc5c604 1993 Gene3D G3DSA:2.160.20.10 788 1009 8.1E-5 T 29-03-2018 IPR012334 Pectin lyase fold AM354_RS21920 27f0a040c496c56f5379d0b04fc5c604 1993 SMART SM00912 46 169 1.5E-44 T 29-03-2018 IPR008638 Filamentous haemagglutinin, N-terminal AM354_RS21920 27f0a040c496c56f5379d0b04fc5c604 1993 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 64 164 2.9E-23 T 29-03-2018 IPR008638 Filamentous haemagglutinin, N-terminal AM354_RS21920 27f0a040c496c56f5379d0b04fc5c604 1993 SUPERFAMILY SSF58096 988 1195 5.62E-6 T 29-03-2018 IPR014739 Channel forming colicin, N-terminal domain GO:0016021|GO:0019835|GO:0050829 AM354_RS21920 27f0a040c496c56f5379d0b04fc5c604 1993 Pfam PF04830 Possible hemagglutinin (DUF637) 1442 1612 6.8E-51 T 29-03-2018 IPR006915 Domain of unknown function DUF637, haemagglutinin putative AM354_RS21920 27f0a040c496c56f5379d0b04fc5c604 1993 Pfam PF14424 The BURPS668_1122 family of deaminases 1859 1983 5.9E-27 T 29-03-2018 IPR032721 Deaminases, BURPS668_1122 family AM354_RS20450 2b90746e093af9fd5fc3c4509435490f 292 Gene3D G3DSA:3.40.190.10 180 267 1.5E-21 T 29-03-2018 AM354_RS20450 2b90746e093af9fd5fc3c4509435490f 292 Pfam PF03466 LysR substrate binding domain 88 286 6.7E-41 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS20450 2b90746e093af9fd5fc3c4509435490f 292 SUPERFAMILY SSF53850 89 284 1.71E-38 T 29-03-2018 AM354_RS20450 2b90746e093af9fd5fc3c4509435490f 292 SUPERFAMILY SSF46785 1 85 8.27E-25 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS20450 2b90746e093af9fd5fc3c4509435490f 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 6.0E-24 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS20450 2b90746e093af9fd5fc3c4509435490f 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.0E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS20450 2b90746e093af9fd5fc3c4509435490f 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.0E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS20450 2b90746e093af9fd5fc3c4509435490f 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.0E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS20450 2b90746e093af9fd5fc3c4509435490f 292 Gene3D G3DSA:3.40.190.10 87 179 5.4E-21 T 29-03-2018 AM354_RS20450 2b90746e093af9fd5fc3c4509435490f 292 Gene3D G3DSA:1.10.10.10 1 83 1.6E-25 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS08315 8bbcfa779bb17e9780ba2f0bcba77bae 241 SMART SM00382 26 213 1.5E-13 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS08315 8bbcfa779bb17e9780ba2f0bcba77bae 241 PIRSF PIRSF039085 1 241 4.9E-104 T 29-03-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AM354_RS08315 8bbcfa779bb17e9780ba2f0bcba77bae 241 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS08315 8bbcfa779bb17e9780ba2f0bcba77bae 241 SUPERFAMILY SSF52540 1 235 2.54E-76 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS08315 8bbcfa779bb17e9780ba2f0bcba77bae 241 Pfam PF00005 ABC transporter 18 165 1.4E-33 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS08315 8bbcfa779bb17e9780ba2f0bcba77bae 241 Gene3D G3DSA:3.40.50.300 1 241 4.8E-71 T 29-03-2018 AM354_RS01835 a25fc8468e2eff92f779186dd3999f1b 752 PIRSF PIRSF036389 1 745 7.1E-209 T 29-03-2018 IPR012368 Oxidoreductase molybdopterin-binding subunit, IorB-related AM354_RS01835 a25fc8468e2eff92f779186dd3999f1b 752 SUPERFAMILY SSF56003 44 233 1.7E-33 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS01835 a25fc8468e2eff92f779186dd3999f1b 752 Gene3D G3DSA:3.30.365.10 331 423 2.1E-25 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS01835 a25fc8468e2eff92f779186dd3999f1b 752 Gene3D G3DSA:3.30.365.10 35 186 1.5E-35 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS01835 a25fc8468e2eff92f779186dd3999f1b 752 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 323 561 1.1E-28 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS01835 a25fc8468e2eff92f779186dd3999f1b 752 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 599 691 3.7E-13 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS01835 a25fc8468e2eff92f779186dd3999f1b 752 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 48 184 1.9E-23 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS01835 a25fc8468e2eff92f779186dd3999f1b 752 Gene3D G3DSA:3.30.365.10 424 591 1.6E-34 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS01835 a25fc8468e2eff92f779186dd3999f1b 752 Gene3D G3DSA:3.30.365.10 600 751 2.4E-34 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS01835 a25fc8468e2eff92f779186dd3999f1b 752 SUPERFAMILY SSF56003 322 747 1.74E-109 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS01835 a25fc8468e2eff92f779186dd3999f1b 752 SUPERFAMILY SSF54665 208 291 3.84E-9 T 29-03-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AM354_RS01835 a25fc8468e2eff92f779186dd3999f1b 752 SMART SM01008 207 293 2.6E-17 T 29-03-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AM354_RS01835 a25fc8468e2eff92f779186dd3999f1b 752 Gene3D G3DSA:3.90.1170.50 187 330 1.3E-31 T 29-03-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AM354_RS06840 a37228a80552803e27ffe5bd5221ef57 736 SUPERFAMILY SSF82861 478 557 1.31E-12 T 29-03-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 AM354_RS06840 a37228a80552803e27ffe5bd5221ef57 736 Pfam PF00924 Mechanosensitive ion channel 516 715 6.7E-37 T 29-03-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 AM354_RS06840 a37228a80552803e27ffe5bd5221ef57 736 SUPERFAMILY SSF82689 631 722 3.4E-12 T 29-03-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 AM354_RS06840 a37228a80552803e27ffe5bd5221ef57 736 SUPERFAMILY SSF50182 559 617 1.34E-9 T 29-03-2018 IPR010920 LSM domain AM354_RS06840 a37228a80552803e27ffe5bd5221ef57 736 Gene3D G3DSA:3.30.70.100 623 721 7.8E-8 T 29-03-2018 AM354_RS06840 a37228a80552803e27ffe5bd5221ef57 736 Gene3D G3DSA:2.30.30.60 576 622 1.5E-6 T 29-03-2018 AM354_RS19205 f32b0a0b19cdfc3b5083e36b30f55063 264 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 261 4.6E-44 T 29-03-2018 AM354_RS19205 f32b0a0b19cdfc3b5083e36b30f55063 264 SUPERFAMILY SSF51735 1 261 5.0E-66 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS19205 f32b0a0b19cdfc3b5083e36b30f55063 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 7.4E-27 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS19205 f32b0a0b19cdfc3b5083e36b30f55063 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 7.4E-27 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS19205 f32b0a0b19cdfc3b5083e36b30f55063 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 224 244 7.4E-27 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS19205 f32b0a0b19cdfc3b5083e36b30f55063 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 7.4E-27 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS19205 f32b0a0b19cdfc3b5083e36b30f55063 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 7.4E-27 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS19205 f32b0a0b19cdfc3b5083e36b30f55063 264 Gene3D G3DSA:3.40.50.720 1 262 3.1E-61 T 29-03-2018 AM354_RS12580 f025d82afd76d50b9fc2ad19e1a0cfdd 1031 Pfam PF00501 AMP-binding enzyme 458 843 7.6E-78 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM354_RS12580 f025d82afd76d50b9fc2ad19e1a0cfdd 1031 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 467 867 2.2E-106 T 29-03-2018 IPR010071 Amino acid adenylation domain AM354_RS12580 f025d82afd76d50b9fc2ad19e1a0cfdd 1031 Gene3D G3DSA:2.30.38.10 755 833 1.7E-15 T 29-03-2018 AM354_RS12580 f025d82afd76d50b9fc2ad19e1a0cfdd 1031 ProSitePatterns PS00455 Putative AMP-binding domain signature. 586 597 - T 29-03-2018 IPR020845 AMP-binding, conserved site AM354_RS12580 f025d82afd76d50b9fc2ad19e1a0cfdd 1031 SUPERFAMILY SSF52777 5 193 8.34E-12 T 29-03-2018 AM354_RS12580 f025d82afd76d50b9fc2ad19e1a0cfdd 1031 SUPERFAMILY SSF52777 179 414 3.11E-26 T 29-03-2018 AM354_RS12580 f025d82afd76d50b9fc2ad19e1a0cfdd 1031 Gene3D G3DSA:3.30.559.10 2 192 1.2E-10 T 29-03-2018 AM354_RS12580 f025d82afd76d50b9fc2ad19e1a0cfdd 1031 Gene3D G3DSA:3.30.300.30 839 947 7.4E-21 T 29-03-2018 AM354_RS12580 f025d82afd76d50b9fc2ad19e1a0cfdd 1031 SUPERFAMILY SSF56801 413 937 1.1E-121 T 29-03-2018 AM354_RS12580 f025d82afd76d50b9fc2ad19e1a0cfdd 1031 Gene3D G3DSA:3.40.50.980 440 577 9.9E-26 T 29-03-2018 AM354_RS12580 f025d82afd76d50b9fc2ad19e1a0cfdd 1031 Gene3D G3DSA:3.40.50.980 578 754 1.1E-49 T 29-03-2018 AM354_RS12580 f025d82afd76d50b9fc2ad19e1a0cfdd 1031 Pfam PF00668 Condensation domain 178 324 2.4E-6 T 29-03-2018 IPR001242 Condensation domain AM354_RS12580 f025d82afd76d50b9fc2ad19e1a0cfdd 1031 Pfam PF00668 Condensation domain 39 126 5.8E-7 T 29-03-2018 IPR001242 Condensation domain AM354_RS23130 a25b487809635ecfec31cab12a831443 224 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 46 182 6.9E-69 T 29-03-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23130 a25b487809635ecfec31cab12a831443 224 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 68 174 3.0E-22 T 29-03-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23130 a25b487809635ecfec31cab12a831443 224 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 148 164 - T 29-03-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23130 a25b487809635ecfec31cab12a831443 224 SUPERFAMILY SSF56770 43 189 3.27E-64 T 29-03-2018 AM354_RS23130 a25b487809635ecfec31cab12a831443 224 Gene3D G3DSA:3.40.50.700 35 209 6.6E-39 T 29-03-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23130 a25b487809635ecfec31cab12a831443 224 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 27 181 41.923 T 29-03-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS19930 0ad5c03a08fabf3c2e3f27138dbaabca 114 Gene3D G3DSA:3.30.2310.20 1 101 3.2E-4 T 29-03-2018 AM354_RS19930 0ad5c03a08fabf3c2e3f27138dbaabca 114 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 12 104 2.4E-23 T 29-03-2018 IPR009241 Toxin HigB-like AM354_RS19540 25e704cf37742abe1b8793470c6f7c82 272 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 29-03-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AM354_RS19540 25e704cf37742abe1b8793470c6f7c82 272 SMART SM01134 84 244 2.2E-64 T 29-03-2018 AM354_RS19540 25e704cf37742abe1b8793470c6f7c82 272 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 2.9E-8 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS19540 25e704cf37742abe1b8793470c6f7c82 272 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 2.9E-8 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS19540 25e704cf37742abe1b8793470c6f7c82 272 SUPERFAMILY SSF100950 88 244 2.2E-29 T 29-03-2018 AM354_RS19540 25e704cf37742abe1b8793470c6f7c82 272 SUPERFAMILY SSF46785 5 69 6.92E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS19540 25e704cf37742abe1b8793470c6f7c82 272 Gene3D G3DSA:1.10.10.10 5 69 4.5E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS19540 25e704cf37742abe1b8793470c6f7c82 272 SMART SM00420 6 58 1.1E-13 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS19540 25e704cf37742abe1b8793470c6f7c82 272 Gene3D G3DSA:3.40.50.1360 76 270 3.2E-37 T 29-03-2018 AM354_RS19540 25e704cf37742abe1b8793470c6f7c82 272 Pfam PF00455 DeoR C terminal sensor domain 87 243 1.7E-50 T 29-03-2018 IPR014036 DeoR C-terminal sensor domain AM354_RS19540 25e704cf37742abe1b8793470c6f7c82 272 Pfam PF08220 DeoR-like helix-turn-helix domain 6 60 1.1E-15 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS10240 da534a4230e1a2a5378041de962e250b 851 Gene3D G3DSA:1.10.1420.10 266 407 3.4E-38 T 29-03-2018 AM354_RS10240 da534a4230e1a2a5378041de962e250b 851 SUPERFAMILY SSF53150 117 269 2.75E-43 T 29-03-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 AM354_RS10240 da534a4230e1a2a5378041de962e250b 851 Gene3D G3DSA:3.30.420.110 135 265 2.6E-28 T 29-03-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 AM354_RS10240 da534a4230e1a2a5378041de962e250b 851 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 688 704 - T 29-03-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 AM354_RS10240 da534a4230e1a2a5378041de962e250b 851 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 10 848 0.0 T 29-03-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 AM354_RS10240 da534a4230e1a2a5378041de962e250b 851 Gene3D G3DSA:1.10.1420.10 408 535 2.2E-30 T 29-03-2018 AM354_RS10240 da534a4230e1a2a5378041de962e250b 851 Pfam PF05192 MutS domain III 272 559 3.1E-40 T 29-03-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 AM354_RS10240 da534a4230e1a2a5378041de962e250b 851 Pfam PF01624 MutS domain I 11 122 1.8E-42 T 29-03-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 AM354_RS10240 da534a4230e1a2a5378041de962e250b 851 SUPERFAMILY SSF48334 270 565 1.96E-90 T 29-03-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 AM354_RS10240 da534a4230e1a2a5378041de962e250b 851 PIRSF PIRSF037677 3 828 1.5E-154 T 29-03-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 AM354_RS10240 da534a4230e1a2a5378041de962e250b 851 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 10 843 25.451 T 29-03-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 AM354_RS10240 da534a4230e1a2a5378041de962e250b 851 SMART SM00534 607 794 2.0E-123 T 29-03-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 AM354_RS10240 da534a4230e1a2a5378041de962e250b 851 Gene3D G3DSA:3.40.1170.10 1 134 2.5E-48 T 29-03-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 AM354_RS10240 da534a4230e1a2a5378041de962e250b 851 SMART SM00533 286 591 4.8E-107 T 29-03-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 AM354_RS10240 da534a4230e1a2a5378041de962e250b 851 Gene3D G3DSA:3.40.50.300 567 827 5.4E-42 T 29-03-2018 AM354_RS10240 da534a4230e1a2a5378041de962e250b 851 SUPERFAMILY SSF55271 5 116 5.49E-43 T 29-03-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 AM354_RS10240 da534a4230e1a2a5378041de962e250b 851 Pfam PF00488 MutS domain V 610 797 7.9E-89 T 29-03-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 AM354_RS10240 da534a4230e1a2a5378041de962e250b 851 Pfam PF05188 MutS domain II 131 256 3.2E-34 T 29-03-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 AM354_RS10240 da534a4230e1a2a5378041de962e250b 851 SUPERFAMILY SSF52540 567 798 2.17E-61 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS10240 da534a4230e1a2a5378041de962e250b 851 Pfam PF05190 MutS family domain IV 428 517 2.3E-28 T 29-03-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 AM354_RS17785 310a89a8bd2ba2c916eeed837bb2cdfc 116 SMART SM00418 7 85 1.1E-28 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS17785 310a89a8bd2ba2c916eeed837bb2cdfc 116 SUPERFAMILY SSF46785 2 103 1.36E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS17785 310a89a8bd2ba2c916eeed837bb2cdfc 116 Pfam PF01022 Bacterial regulatory protein, arsR family 14 59 1.4E-15 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS17785 310a89a8bd2ba2c916eeed837bb2cdfc 116 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 29 40 4.8E-25 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS17785 310a89a8bd2ba2c916eeed837bb2cdfc 116 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 9 24 4.8E-25 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS17785 310a89a8bd2ba2c916eeed837bb2cdfc 116 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 42 57 4.8E-25 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS17785 310a89a8bd2ba2c916eeed837bb2cdfc 116 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 57 72 4.8E-25 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS17785 310a89a8bd2ba2c916eeed837bb2cdfc 116 Gene3D G3DSA:1.10.10.10 2 106 5.3E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS23480 3537f3fc1483e5c1e04c4b12ac2c6e59 245 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 132 143 - T 29-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM354_RS23480 3537f3fc1483e5c1e04c4b12ac2c6e59 245 Gene3D G3DSA:3.30.70.20 56 113 1.9E-16 T 29-03-2018 AM354_RS23480 3537f3fc1483e5c1e04c4b12ac2c6e59 245 Pfam PF13247 4Fe-4S dicluster domain 94 187 2.2E-29 T 29-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM354_RS23480 3537f3fc1483e5c1e04c4b12ac2c6e59 245 Gene3D G3DSA:3.30.70.20 27 55 0.017 T 29-03-2018 AM354_RS23480 3537f3fc1483e5c1e04c4b12ac2c6e59 245 SUPERFAMILY SSF54862 42 222 7.22E-65 T 29-03-2018 AM354_RS23480 3537f3fc1483e5c1e04c4b12ac2c6e59 245 Gene3D G3DSA:3.30.70.20 114 153 1.1E-19 T 29-03-2018 AM354_RS23480 3537f3fc1483e5c1e04c4b12ac2c6e59 245 Gene3D G3DSA:3.30.70.20 154 227 7.5E-22 T 29-03-2018 AM354_RS00495 6bd68cafa94707bd66b82a3efd5d53c1 163 Gene3D G3DSA:1.20.1260.10 1 163 8.7E-45 T 29-03-2018 IPR012347 Ferritin-related AM354_RS00495 6bd68cafa94707bd66b82a3efd5d53c1 163 ProSitePatterns PS00819 Dps protein family signature 2. 70 84 - T 29-03-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 AM354_RS00495 6bd68cafa94707bd66b82a3efd5d53c1 163 Pfam PF00210 Ferritin-like domain 24 163 5.2E-28 T 29-03-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 AM354_RS00495 6bd68cafa94707bd66b82a3efd5d53c1 163 PIRSF PIRSF005900 1 163 1.8E-48 T 29-03-2018 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 AM354_RS00495 6bd68cafa94707bd66b82a3efd5d53c1 163 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 44 60 5.5E-15 T 29-03-2018 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 AM354_RS00495 6bd68cafa94707bd66b82a3efd5d53c1 163 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 68 84 5.5E-15 T 29-03-2018 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 AM354_RS00495 6bd68cafa94707bd66b82a3efd5d53c1 163 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 139 157 5.5E-15 T 29-03-2018 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 AM354_RS00495 6bd68cafa94707bd66b82a3efd5d53c1 163 ProSitePatterns PS00818 Dps protein family signature 1. 44 60 - T 29-03-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 AM354_RS00495 6bd68cafa94707bd66b82a3efd5d53c1 163 SUPERFAMILY SSF47240 7 163 1.91E-47 T 29-03-2018 IPR009078 Ferritin-like superfamily AM354_RS05940 db30fba9d665012fa1ac87e6d7447fff 300 Pfam PF08443 RimK-like ATP-grasp domain 97 286 2.4E-72 T 29-03-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 AM354_RS05940 db30fba9d665012fa1ac87e6d7447fff 300 Gene3D G3DSA:3.30.470.20 171 277 1.2E-35 T 29-03-2018 AM354_RS05940 db30fba9d665012fa1ac87e6d7447fff 300 Gene3D G3DSA:3.40.50.20 1 114 9.1E-34 T 29-03-2018 AM354_RS05940 db30fba9d665012fa1ac87e6d7447fff 300 SUPERFAMILY SSF56059 98 289 2.98E-48 T 29-03-2018 AM354_RS05940 db30fba9d665012fa1ac87e6d7447fff 300 Hamap MF_01552 Ribosomal protein S6--L-glutamate ligase [rimK]. 1 295 54.248 T 29-03-2018 IPR023533 Ribosomal protein S6--L-glutamate ligase RimK AM354_RS05940 db30fba9d665012fa1ac87e6d7447fff 300 TIGRFAM TIGR00768 rimK_fam: alpha-L-glutamate ligase, RimK family 2 286 7.5E-92 T 29-03-2018 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX GO:0006464 Reactome: R-HSA-70614 AM354_RS05940 db30fba9d665012fa1ac87e6d7447fff 300 Gene3D G3DSA:3.30.1490.20 115 170 1.6E-11 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AM354_RS13355 a3be4ac8e4e622377de94e247c5f5b1c 376 SUPERFAMILY SSF53756 2 372 1.12E-141 T 29-03-2018 AM354_RS13355 a3be4ac8e4e622377de94e247c5f5b1c 376 Hamap MF_02028 UDP-N-acetylglucosamine 2-epimerase [wecB]. 16 374 70.992 T 29-03-2018 IPR032892 UDP-N-acetylglucosamine 2-epimerase WecB GO:0008761|GO:0009246 KEGG: 00520+5.1.3.14|MetaCyc: PWY-7335|MetaCyc: PWY-7815|MetaCyc: PWY-7816|MetaCyc: PWY-7819 AM354_RS13355 a3be4ac8e4e622377de94e247c5f5b1c 376 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 22 370 2.1E-127 T 29-03-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001 AM354_RS13355 a3be4ac8e4e622377de94e247c5f5b1c 376 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 1 372 1.4E-171 T 29-03-2018 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 AM354_RS13355 a3be4ac8e4e622377de94e247c5f5b1c 376 Gene3D G3DSA:3.40.50.2000 207 350 6.7E-47 T 29-03-2018 AM354_RS13355 a3be4ac8e4e622377de94e247c5f5b1c 376 Gene3D G3DSA:3.40.50.2000 1 206 1.1E-78 T 29-03-2018 AM354_RS04580 2cf72945b8b27ba49cc681d62900b8d1 399 Pfam PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase 2 80 1.4E-39 T 29-03-2018 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AM354_RS04580 2cf72945b8b27ba49cc681d62900b8d1 399 Hamap MF_01838 Trans-2-enoyl-CoA reductase [NADH] [fabV]. 1 393 56.301 T 29-03-2018 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AM354_RS04580 2cf72945b8b27ba49cc681d62900b8d1 399 Pfam PF07055 Enoyl reductase FAD binding domain 324 386 2.0E-29 T 29-03-2018 IPR024906 Enoyl reductase FAD binding domain KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AM354_RS04580 2cf72945b8b27ba49cc681d62900b8d1 399 Pfam PF12241 Trans-2-enoyl-CoA reductase catalytic region 82 317 6.1E-116 T 29-03-2018 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AM354_RS23820 8ae4dc4f9c2cc1b06fe1a07b476809a5 230 TIGRFAM TIGR00760 araD: L-ribulose-5-phosphate 4-epimerase 1 230 5.4E-122 T 29-03-2018 IPR004661 L-ribulose-5-phosphate 4-epimerase GO:0008270|GO:0008742|GO:0019572 KEGG: 00040+5.1.3.4|KEGG: 00053+5.1.3.4|MetaCyc: PWY-6961 AM354_RS23820 8ae4dc4f9c2cc1b06fe1a07b476809a5 230 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 8 195 7.9E-46 T 29-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM354_RS23820 8ae4dc4f9c2cc1b06fe1a07b476809a5 230 Gene3D G3DSA:3.40.225.10 1 230 3.0E-60 T 29-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM354_RS23820 8ae4dc4f9c2cc1b06fe1a07b476809a5 230 SMART SM01007 7 197 9.2E-69 T 29-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM354_RS23820 8ae4dc4f9c2cc1b06fe1a07b476809a5 230 SUPERFAMILY SSF53639 1 222 3.73E-70 T 29-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM354_RS17295 2f712023bdfa94bb56549ddda166efd5 414 SUPERFAMILY SSF81301 2 119 6.1E-31 T 29-03-2018 AM354_RS17295 2f712023bdfa94bb56549ddda166efd5 414 Gene3D G3DSA:1.10.3090.10 119 410 1.9E-60 T 29-03-2018 AM354_RS17295 2f712023bdfa94bb56549ddda166efd5 414 PIRSF PIRSF000813 1 408 1.5E-200 T 29-03-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 AM354_RS17295 2f712023bdfa94bb56549ddda166efd5 414 Pfam PF01743 Poly A polymerase head domain 3 122 4.5E-18 T 29-03-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 AM354_RS17295 2f712023bdfa94bb56549ddda166efd5 414 Hamap MF_01261 Multifunctional CCA protein [cca]. 1 407 53.404 T 29-03-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 AM354_RS17295 2f712023bdfa94bb56549ddda166efd5 414 Hamap MF_01262 CCA-adding enzyme [cca]. 1 401 45.622 T 29-03-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 AM354_RS17295 2f712023bdfa94bb56549ddda166efd5 414 Pfam PF01966 HD domain 231 327 3.0E-11 T 29-03-2018 IPR006674 HD domain AM354_RS17295 2f712023bdfa94bb56549ddda166efd5 414 SUPERFAMILY SSF81891 120 406 2.49E-57 T 29-03-2018 AM354_RS17295 2f712023bdfa94bb56549ddda166efd5 414 Gene3D G3DSA:3.30.460.10 1 118 2.9E-28 T 29-03-2018 AM354_RS17295 2f712023bdfa94bb56549ddda166efd5 414 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 149 212 1.9E-17 T 29-03-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 AM354_RS23690 3d0bc01950f15145bb6629b5ec32a99e 262 Gene3D G3DSA:3.40.50.300 1 246 2.4E-49 T 29-03-2018 AM354_RS23690 3d0bc01950f15145bb6629b5ec32a99e 262 SUPERFAMILY SSF52540 5 229 1.39E-50 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS23690 3d0bc01950f15145bb6629b5ec32a99e 262 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS23690 3d0bc01950f15145bb6629b5ec32a99e 262 SMART SM00382 30 215 4.0E-13 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS23690 3d0bc01950f15145bb6629b5ec32a99e 262 Pfam PF00005 ABC transporter 28 165 2.6E-26 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS05415 99d390ac6d1bfb9f82de636915c2e022 152 Pfam PF02142 MGS-like domain 26 118 1.4E-20 T 29-03-2018 IPR011607 Methylglyoxal synthase-like domain AM354_RS05415 99d390ac6d1bfb9f82de636915c2e022 152 ProSitePatterns PS01335 Methylglyoxal synthase active site. 65 73 - T 29-03-2018 IPR018148 Methylglyoxal synthase, active site GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 AM354_RS05415 99d390ac6d1bfb9f82de636915c2e022 152 Gene3D G3DSA:3.40.50.1380 1 152 1.8E-47 T 29-03-2018 IPR011607 Methylglyoxal synthase-like domain AM354_RS05415 99d390ac6d1bfb9f82de636915c2e022 152 SUPERFAMILY SSF52335 6 151 1.53E-60 T 29-03-2018 IPR011607 Methylglyoxal synthase-like domain AM354_RS05415 99d390ac6d1bfb9f82de636915c2e022 152 SMART SM00851 25 118 8.7E-29 T 29-03-2018 IPR011607 Methylglyoxal synthase-like domain AM354_RS05415 99d390ac6d1bfb9f82de636915c2e022 152 Hamap MF_00549 Methylglyoxal synthase [mgsA]. 12 131 39.575 T 29-03-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 AM354_RS05415 99d390ac6d1bfb9f82de636915c2e022 152 TIGRFAM TIGR00160 MGSA: methylglyoxal synthase 11 151 4.4E-69 T 29-03-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 AM354_RS05415 99d390ac6d1bfb9f82de636915c2e022 152 PIRSF PIRSF006614 8 151 3.3E-67 T 29-03-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 AM354_RS04415 13a6c75c25a149ef4b8178df21633325 427 Pfam PF07690 Major Facilitator Superfamily 27 358 7.1E-25 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS04415 13a6c75c25a149ef4b8178df21633325 427 SUPERFAMILY SSF103473 25 405 4.97E-38 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS04415 13a6c75c25a149ef4b8178df21633325 427 Gene3D G3DSA:1.20.1250.20 23 208 5.6E-17 T 29-03-2018 AM354_RS04415 13a6c75c25a149ef4b8178df21633325 427 Gene3D G3DSA:1.20.1250.20 209 406 2.6E-18 T 29-03-2018 AM354_RS03050 01450feeee4bbbb5445ed424c4ab3a74 173 ProSitePatterns PS00087 Copper/Zinc superoxide dismutase signature 1. 65 75 - T 29-03-2018 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 AM354_RS03050 01450feeee4bbbb5445ed424c4ab3a74 173 ProSitePatterns PS00332 Copper/Zinc superoxide dismutase signature 2. 161 172 - T 29-03-2018 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 AM354_RS03050 01450feeee4bbbb5445ed424c4ab3a74 173 Gene3D G3DSA:2.60.40.200 18 173 1.0E-35 T 29-03-2018 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 AM354_RS03050 01450feeee4bbbb5445ed424c4ab3a74 173 SUPERFAMILY SSF49329 25 173 4.71E-48 T 29-03-2018 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 AM354_RS03050 01450feeee4bbbb5445ed424c4ab3a74 173 Pfam PF00080 Copper/zinc superoxide dismutase (SODC) 35 172 2.4E-30 T 29-03-2018 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 AM354_RS16255 bceb261872801b8257706b9d9e5b2948 584 Pfam PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) 9 566 1.2E-253 T 29-03-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 AM354_RS16255 bceb261872801b8257706b9d9e5b2948 584 Hamap MF_00747 Isocitrate dehydrogenase kinase/phosphatase [aceK]. 1 570 44.329 T 29-03-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 AM354_RS16255 bceb261872801b8257706b9d9e5b2948 584 ProDom PD043552 KINASE KINASE/PHOSPHATASE ISOCITRATE DEHYDROGENASE 3.1.3.- IDH TRANSFERASE IDHK/P HYDROLASE ENZYME 8 572 0.0 T 29-03-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 AM354_RS16255 bceb261872801b8257706b9d9e5b2948 584 PIRSF PIRSF000719 1 575 2.7E-290 T 29-03-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 AM354_RS15790 bd760aa2ee45ed84ba796bb617323ddf 112 Gene3D G3DSA:1.20.58.80 6 104 8.0E-32 T 29-03-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 AM354_RS15790 bd760aa2ee45ed84ba796bb617323ddf 112 SUPERFAMILY SSF46973 7 104 1.7E-31 T 29-03-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 AM354_RS15790 bd760aa2ee45ed84ba796bb617323ddf 112 Pfam PF02255 PTS system, Lactose/Cellobiose specific IIA subunit 11 103 7.2E-30 T 29-03-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 AM354_RS15790 bd760aa2ee45ed84ba796bb617323ddf 112 PIRSF PIRSF000699 1 110 3.0E-31 T 29-03-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 AM354_RS17405 b765042a02d432da7bfea85771ba9621 304 Gene3D G3DSA:1.10.10.10 1 85 1.5E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS17405 b765042a02d432da7bfea85771ba9621 304 SUPERFAMILY SSF53850 91 297 1.56E-41 T 29-03-2018 AM354_RS17405 b765042a02d432da7bfea85771ba9621 304 SUPERFAMILY SSF46785 4 113 7.14E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS17405 b765042a02d432da7bfea85771ba9621 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 3.4E-17 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS17405 b765042a02d432da7bfea85771ba9621 304 Gene3D G3DSA:3.40.190.10 93 177 1.8E-19 T 29-03-2018 AM354_RS17405 b765042a02d432da7bfea85771ba9621 304 Pfam PF03466 LysR substrate binding domain 89 293 7.5E-41 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS17405 b765042a02d432da7bfea85771ba9621 304 Gene3D G3DSA:3.40.190.10 178 263 2.1E-22 T 29-03-2018 AM354_RS15365 6bda7fd8dcacbdba8473b485f6341473 646 Gene3D G3DSA:3.40.50.1220 211 380 2.7E-38 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM354_RS15365 6bda7fd8dcacbdba8473b485f6341473 646 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 20 196 2.0E-32 T 29-03-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AM354_RS15365 6bda7fd8dcacbdba8473b485f6341473 646 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 442 601 6.0E-39 T 29-03-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AM354_RS15365 6bda7fd8dcacbdba8473b485f6341473 646 Gene3D G3DSA:3.40.50.970 2 210 4.1E-47 T 29-03-2018 AM354_RS15365 6bda7fd8dcacbdba8473b485f6341473 646 TIGRFAM TIGR04377 myo_inos_iolD: 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase 5 644 1.2E-285 T 29-03-2018 IPR030817 3,5/4-Trihydroxycyclohexa-1,2-dione hydrolase GO:0016823|GO:0019310|GO:0030976 KEGG: 00562+3.7.1.22 AM354_RS15365 6bda7fd8dcacbdba8473b485f6341473 646 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 220 353 1.8E-32 T 29-03-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AM354_RS15365 6bda7fd8dcacbdba8473b485f6341473 646 SUPERFAMILY SSF52518 419 630 4.29E-51 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS15365 6bda7fd8dcacbdba8473b485f6341473 646 Gene3D G3DSA:3.40.50.970 400 611 5.6E-36 T 29-03-2018 AM354_RS15365 6bda7fd8dcacbdba8473b485f6341473 646 SUPERFAMILY SSF52518 3 208 3.85E-33 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS15365 6bda7fd8dcacbdba8473b485f6341473 646 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 478 497 - T 29-03-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 AM354_RS15365 6bda7fd8dcacbdba8473b485f6341473 646 SUPERFAMILY SSF52467 185 368 5.34E-41 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM354_RS12475 06f5c59071caeb98fc16a513bfa3e311 478 Gene3D G3DSA:1.20.200.10 142 418 6.9E-72 T 29-03-2018 AM354_RS12475 06f5c59071caeb98fc16a513bfa3e311 478 ProSitePatterns PS00163 Fumarate lyases signature. 320 329 - T 29-03-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 AM354_RS12475 06f5c59071caeb98fc16a513bfa3e311 478 PRINTS PR00149 Fumarate lyase superfamily signature 320 336 1.7E-27 T 29-03-2018 IPR000362 Fumarate lyase family AM354_RS12475 06f5c59071caeb98fc16a513bfa3e311 478 PRINTS PR00149 Fumarate lyase superfamily signature 138 156 1.7E-27 T 29-03-2018 IPR000362 Fumarate lyase family AM354_RS12475 06f5c59071caeb98fc16a513bfa3e311 478 PRINTS PR00149 Fumarate lyase superfamily signature 183 201 1.7E-27 T 29-03-2018 IPR000362 Fumarate lyase family AM354_RS12475 06f5c59071caeb98fc16a513bfa3e311 478 PRINTS PR00149 Fumarate lyase superfamily signature 274 301 1.7E-27 T 29-03-2018 IPR000362 Fumarate lyase family AM354_RS12475 06f5c59071caeb98fc16a513bfa3e311 478 PRINTS PR00145 Argininosuccinate lyase family signature 320 336 1.2E-5 T 29-03-2018 AM354_RS12475 06f5c59071caeb98fc16a513bfa3e311 478 PRINTS PR00145 Argininosuccinate lyase family signature 137 159 1.2E-5 T 29-03-2018 AM354_RS12475 06f5c59071caeb98fc16a513bfa3e311 478 PRINTS PR00145 Argininosuccinate lyase family signature 178 198 1.2E-5 T 29-03-2018 AM354_RS12475 06f5c59071caeb98fc16a513bfa3e311 478 Gene3D G3DSA:1.10.40.30 419 468 2.4E-18 T 29-03-2018 AM354_RS12475 06f5c59071caeb98fc16a513bfa3e311 478 Pfam PF10415 Fumarase C C-terminus 411 464 1.6E-17 T 29-03-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AM354_RS12475 06f5c59071caeb98fc16a513bfa3e311 478 Pfam PF00206 Lyase 13 345 2.1E-109 T 29-03-2018 IPR022761 Fumarate lyase, N-terminal AM354_RS12475 06f5c59071caeb98fc16a513bfa3e311 478 Gene3D G3DSA:1.10.275.10 3 141 4.3E-52 T 29-03-2018 IPR024083 Fumarase/histidase, N-terminal AM354_RS12475 06f5c59071caeb98fc16a513bfa3e311 478 SUPERFAMILY SSF48557 2 458 4.27E-144 T 29-03-2018 IPR008948 L-Aspartase-like GO:0003824 AM354_RS12475 06f5c59071caeb98fc16a513bfa3e311 478 TIGRFAM TIGR00839 aspA: aspartate ammonia-lyase 6 474 1.1E-266 T 29-03-2018 IPR004708 Aspartate ammonia-lyase GO:0006531|GO:0008797 KEGG: 00250+4.3.1.1 AM354_RS05960 09c4d5fb93b30c23b3d1fb7deb26867f 562 Hamap MF_01015 Putative transport protein YbjL [ybjL]. 1 557 58.029 T 29-03-2018 IPR023017 Transport protein YbjL, putative AM354_RS05960 09c4d5fb93b30c23b3d1fb7deb26867f 562 Gene3D G3DSA:3.30.70.1450 215 291 5.7E-10 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM354_RS05960 09c4d5fb93b30c23b3d1fb7deb26867f 562 SUPERFAMILY SSF116726 227 282 1.44E-10 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM354_RS05960 09c4d5fb93b30c23b3d1fb7deb26867f 562 Gene3D G3DSA:3.30.70.1450 295 375 4.6E-9 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM354_RS05960 09c4d5fb93b30c23b3d1fb7deb26867f 562 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 391 541 3.2E-45 T 29-03-2018 IPR006512 YidE/YbjL duplication AM354_RS05960 09c4d5fb93b30c23b3d1fb7deb26867f 562 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 21 169 3.7E-38 T 29-03-2018 IPR006512 YidE/YbjL duplication AM354_RS05960 09c4d5fb93b30c23b3d1fb7deb26867f 562 Pfam PF06826 Predicted Permease Membrane Region 17 181 8.6E-38 T 29-03-2018 IPR006512 YidE/YbjL duplication AM354_RS05960 09c4d5fb93b30c23b3d1fb7deb26867f 562 Pfam PF06826 Predicted Permease Membrane Region 385 554 1.9E-41 T 29-03-2018 IPR006512 YidE/YbjL duplication AM354_RS05960 09c4d5fb93b30c23b3d1fb7deb26867f 562 Pfam PF02080 TrkA-C domain 305 372 1.3E-8 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM354_RS05960 09c4d5fb93b30c23b3d1fb7deb26867f 562 Pfam PF02080 TrkA-C domain 227 281 4.5E-9 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM354_RS05960 09c4d5fb93b30c23b3d1fb7deb26867f 562 SUPERFAMILY SSF116726 291 374 1.18E-10 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM354_RS05565 d6badc3b02a49c2550e50051d1d8002e 374 ProSitePatterns PS00576 General diffusion Gram-negative porins signature. 326 342 - T 29-03-2018 IPR013793 Porin, Gram-negative type, conserved site AM354_RS05565 d6badc3b02a49c2550e50051d1d8002e 374 Pfam PF00267 Gram-negative porin 27 374 2.1E-150 T 29-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM354_RS05565 d6badc3b02a49c2550e50051d1d8002e 374 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 96 106 3.2E-16 T 29-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM354_RS05565 d6badc3b02a49c2550e50051d1d8002e 374 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 153 164 3.2E-16 T 29-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM354_RS05565 d6badc3b02a49c2550e50051d1d8002e 374 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 326 343 3.2E-16 T 29-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM354_RS05565 d6badc3b02a49c2550e50051d1d8002e 374 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 52 63 3.2E-16 T 29-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM354_RS05565 d6badc3b02a49c2550e50051d1d8002e 374 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 230 242 3.2E-16 T 29-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM354_RS05565 d6badc3b02a49c2550e50051d1d8002e 374 Gene3D G3DSA:2.40.160.10 10 374 9.1E-60 T 29-03-2018 AM354_RS05565 d6badc3b02a49c2550e50051d1d8002e 374 SUPERFAMILY SSF56935 22 374 5.49E-87 T 29-03-2018 AM354_RS05565 d6badc3b02a49c2550e50051d1d8002e 374 PRINTS PR00183 E.coli/Salmonella-type porin signature 236 253 3.4E-72 T 29-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM354_RS05565 d6badc3b02a49c2550e50051d1d8002e 374 PRINTS PR00183 E.coli/Salmonella-type porin signature 22 38 3.4E-72 T 29-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM354_RS05565 d6badc3b02a49c2550e50051d1d8002e 374 PRINTS PR00183 E.coli/Salmonella-type porin signature 279 298 3.4E-72 T 29-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM354_RS05565 d6badc3b02a49c2550e50051d1d8002e 374 PRINTS PR00183 E.coli/Salmonella-type porin signature 151 173 3.4E-72 T 29-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM354_RS05565 d6badc3b02a49c2550e50051d1d8002e 374 PRINTS PR00183 E.coli/Salmonella-type porin signature 51 69 3.4E-72 T 29-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM354_RS05565 d6badc3b02a49c2550e50051d1d8002e 374 PRINTS PR00183 E.coli/Salmonella-type porin signature 96 118 3.4E-72 T 29-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM354_RS20225 36299d1cace7240bfc3dc8614febce93 340 Gene3D G3DSA:2.160.10.10 76 133 5.2E-12 T 29-03-2018 AM354_RS20225 36299d1cace7240bfc3dc8614febce93 340 Gene3D G3DSA:2.160.10.10 134 309 6.8E-47 T 29-03-2018 AM354_RS20225 36299d1cace7240bfc3dc8614febce93 340 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 9 326 35.974 T 29-03-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 AM354_RS20225 36299d1cace7240bfc3dc8614febce93 340 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 8 329 3.3E-124 T 29-03-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 AM354_RS20225 36299d1cace7240bfc3dc8614febce93 340 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 225 253 - T 29-03-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AM354_RS20225 36299d1cace7240bfc3dc8614febce93 340 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 130 158 - T 29-03-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AM354_RS20225 36299d1cace7240bfc3dc8614febce93 340 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 222 255 2.6E-7 T 29-03-2018 IPR001451 Hexapeptide repeat AM354_RS20225 36299d1cace7240bfc3dc8614febce93 340 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 110 144 1.4E-9 T 29-03-2018 IPR001451 Hexapeptide repeat AM354_RS20225 36299d1cace7240bfc3dc8614febce93 340 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 145 179 1.6E-7 T 29-03-2018 IPR001451 Hexapeptide repeat AM354_RS20225 36299d1cace7240bfc3dc8614febce93 340 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 22 89 9.0E-25 T 29-03-2018 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 AM354_RS20225 36299d1cace7240bfc3dc8614febce93 340 SUPERFAMILY SSF51161 33 316 3.17E-88 T 29-03-2018 IPR011004 Trimeric LpxA-like AM354_RS10035 f981ebe9af630ce2c50fd71fee3cddc4 113 Gene3D G3DSA:3.30.160.100 2 92 2.1E-26 T 29-03-2018 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 AM354_RS10035 f981ebe9af630ce2c50fd71fee3cddc4 113 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 91 8.2E-22 T 29-03-2018 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 AM354_RS10035 f981ebe9af630ce2c50fd71fee3cddc4 113 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 96 9.1E-34 T 29-03-2018 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 AM354_RS10035 f981ebe9af630ce2c50fd71fee3cddc4 113 SUPERFAMILY SSF69754 3 102 3.4E-32 T 29-03-2018 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 AM354_RS09860 7aa21cbacb3eba3e00e3b6cbd212af14 193 Hamap MF_00067 Phosphoheptose isomerase [gmhA]. 1 190 38.154 T 29-03-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 AM354_RS09860 7aa21cbacb3eba3e00e3b6cbd212af14 193 Pfam PF13580 SIS domain 13 146 4.4E-31 T 29-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AM354_RS09860 7aa21cbacb3eba3e00e3b6cbd212af14 193 SUPERFAMILY SSF53697 1 189 3.03E-51 T 29-03-2018 AM354_RS09860 7aa21cbacb3eba3e00e3b6cbd212af14 193 Gene3D G3DSA:3.40.50.10490 1 193 1.6E-41 T 29-03-2018 AM354_RS09860 7aa21cbacb3eba3e00e3b6cbd212af14 193 TIGRFAM TIGR00441 gmhA: phosphoheptose isomerase 35 187 4.3E-83 T 29-03-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 AM354_RS16885 e33bb0566af50d2a3db110ebcf0887b3 103 Pfam PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system 20 93 5.5E-22 T 29-03-2018 IPR018669 Toxin-antitoxin system, toxin component, HigB, putative GO:0016788 AM354_RS18785 8a7be546ffa82323e23e129d14821921 343 Gene3D G3DSA:1.10.443.10 114 323 3.4E-25 T 29-03-2018 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM354_RS18785 8a7be546ffa82323e23e129d14821921 343 Gene3D G3DSA:1.10.150.130 2 113 2.2E-18 T 29-03-2018 IPR023109 Integrase/recombinase, N-terminal AM354_RS18785 8a7be546ffa82323e23e129d14821921 343 SUPERFAMILY SSF56349 9 314 2.41E-37 T 29-03-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AM354_RS18785 8a7be546ffa82323e23e129d14821921 343 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 14 91 2.7E-8 T 29-03-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 AM354_RS18785 8a7be546ffa82323e23e129d14821921 343 Pfam PF00589 Phage integrase family 157 312 2.4E-21 T 29-03-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM354_RS09665 0fa337da34d9b8ed98e2317c2cb681fd 378 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 67 249 1.1E-4 T 29-03-2018 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 AM354_RS09665 0fa337da34d9b8ed98e2317c2cb681fd 378 SUPERFAMILY SSF53474 277 378 1.5E-45 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS09665 0fa337da34d9b8ed98e2317c2cb681fd 378 SUPERFAMILY SSF53474 15 199 1.5E-45 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS09665 0fa337da34d9b8ed98e2317c2cb681fd 378 Gene3D G3DSA:3.40.50.1820 36 377 2.5E-35 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS01995 d33e9283492fe4a1355560f2470b6dc5 420 Gene3D G3DSA:2.60.40.10 8 154 5.3E-42 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS01995 d33e9283492fe4a1355560f2470b6dc5 420 Gene3D G3DSA:3.40.50.1820 157 420 2.6E-34 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS01995 d33e9283492fe4a1355560f2470b6dc5 420 Pfam PF00756 Putative esterase 186 414 1.3E-34 T 29-03-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 AM354_RS01995 d33e9283492fe4a1355560f2470b6dc5 420 Pfam PF11806 Domain of unknown function (DUF3327) 38 167 5.7E-38 T 29-03-2018 IPR021764 Enterochelin esterase, N-terminal GO:0005506|GO:0005737|GO:0006826|GO:0008849 AM354_RS01995 d33e9283492fe4a1355560f2470b6dc5 420 SUPERFAMILY SSF81296 11 161 7.7E-41 T 29-03-2018 IPR014756 Immunoglobulin E-set AM354_RS01995 d33e9283492fe4a1355560f2470b6dc5 420 SUPERFAMILY SSF53474 176 415 1.23E-44 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS09065 3d093e6215d844e13e2c8f7d075d59c4 627 SUPERFAMILY SSF109998 203 240 2.09E-36 T 29-03-2018 IPR027304 Trigger factor/SurA domain AM354_RS09065 3d093e6215d844e13e2c8f7d075d59c4 627 SUPERFAMILY SSF109998 40 169 2.09E-36 T 29-03-2018 IPR027304 Trigger factor/SurA domain AM354_RS09065 3d093e6215d844e13e2c8f7d075d59c4 627 Gene3D G3DSA:3.10.50.40 220 383 7.0E-32 T 29-03-2018 AM354_RS09065 3d093e6215d844e13e2c8f7d075d59c4 627 Gene3D G3DSA:3.10.50.40 384 498 1.8E-8 T 29-03-2018 AM354_RS09065 3d093e6215d844e13e2c8f7d075d59c4 627 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 297 318 - T 29-03-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 AM354_RS09065 3d093e6215d844e13e2c8f7d075d59c4 627 Pfam PF13624 SurA N-terminal domain 1 165 8.3E-52 T 29-03-2018 AM354_RS09065 3d093e6215d844e13e2c8f7d075d59c4 627 Pfam PF13145 PPIC-type PPIASE domain 249 370 5.3E-24 T 29-03-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 AM354_RS09065 3d093e6215d844e13e2c8f7d075d59c4 627 Pfam PF13145 PPIC-type PPIASE domain 387 486 3.1E-6 T 29-03-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 AM354_RS09065 3d093e6215d844e13e2c8f7d075d59c4 627 Gene3D G3DSA:1.10.4030.10 37 169 8.0E-25 T 29-03-2018 AM354_RS09065 3d093e6215d844e13e2c8f7d075d59c4 627 SUPERFAMILY SSF54534 225 357 7.2E-23 T 29-03-2018 AM354_RS09180 1d45eb5e4ec304fcb6e5810f39eb1fb0 621 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 12 620 0.0 T 29-03-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AM354_RS09180 1d45eb5e4ec304fcb6e5810f39eb1fb0 621 ProSitePatterns PS00802 Transketolase signature 2. 425 441 - T 29-03-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AM354_RS09180 1d45eb5e4ec304fcb6e5810f39eb1fb0 621 SUPERFAMILY SSF52922 491 619 1.7E-32 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AM354_RS09180 1d45eb5e4ec304fcb6e5810f39eb1fb0 621 Gene3D G3DSA:3.40.50.970 3 297 1.0E-75 T 29-03-2018 AM354_RS09180 1d45eb5e4ec304fcb6e5810f39eb1fb0 621 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 10 620 46.321 T 29-03-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AM354_RS09180 1d45eb5e4ec304fcb6e5810f39eb1fb0 621 Gene3D G3DSA:3.40.50.920 495 621 2.3E-35 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AM354_RS09180 1d45eb5e4ec304fcb6e5810f39eb1fb0 621 SUPERFAMILY SSF52518 317 504 1.03E-57 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS09180 1d45eb5e4ec304fcb6e5810f39eb1fb0 621 Gene3D G3DSA:3.40.50.970 298 485 3.0E-62 T 29-03-2018 AM354_RS09180 1d45eb5e4ec304fcb6e5810f39eb1fb0 621 SUPERFAMILY SSF52518 243 381 4.29E-76 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS09180 1d45eb5e4ec304fcb6e5810f39eb1fb0 621 SUPERFAMILY SSF52518 9 199 4.29E-76 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS09180 1d45eb5e4ec304fcb6e5810f39eb1fb0 621 ProSitePatterns PS00801 Transketolase signature 1. 36 55 - T 29-03-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AM354_RS09180 1d45eb5e4ec304fcb6e5810f39eb1fb0 621 Pfam PF02780 Transketolase, C-terminal domain 495 611 1.5E-27 T 29-03-2018 IPR033248 Transketolase, C-terminal domain AM354_RS09180 1d45eb5e4ec304fcb6e5810f39eb1fb0 621 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 14 282 7.5E-118 T 29-03-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AM354_RS09180 1d45eb5e4ec304fcb6e5810f39eb1fb0 621 Pfam PF02779 Transketolase, pyrimidine binding domain 320 479 2.3E-38 T 29-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AM354_RS09180 1d45eb5e4ec304fcb6e5810f39eb1fb0 621 SMART SM00861 319 484 1.7E-65 T 29-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AM354_RS09565 d5c9ab17f1e37bfe990efe02c8063587 287 Pfam PF03848 Tellurite resistance protein TehB 91 283 3.7E-93 T 29-03-2018 IPR015985 Tellurite resistance methyltransferase TehB-like domain AM354_RS09565 d5c9ab17f1e37bfe990efe02c8063587 287 Pfam PF09313 Domain of unknown function (DUF1971) 9 89 1.9E-29 T 29-03-2018 IPR015392 Domain of unknown function DUF1971 AM354_RS09565 d5c9ab17f1e37bfe990efe02c8063587 287 Gene3D G3DSA:3.40.50.150 97 287 1.6E-22 T 29-03-2018 AM354_RS09565 d5c9ab17f1e37bfe990efe02c8063587 287 PIRSF PIRSF005215 1 287 1.4E-128 T 29-03-2018 IPR014431 Tellurite resistance methyltransferase, TehB type-2 AM354_RS09565 d5c9ab17f1e37bfe990efe02c8063587 287 Gene3D G3DSA:2.60.120.10 2 96 1.6E-36 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS09565 d5c9ab17f1e37bfe990efe02c8063587 287 TIGRFAM TIGR00477 tehB: tellurite resistance protein TehB 49 286 5.1E-102 T 29-03-2018 IPR004537 Tellurite resistance methyltransferase, TehB GO:0005737|GO:0008757|GO:0046690 AM354_RS09565 d5c9ab17f1e37bfe990efe02c8063587 287 SUPERFAMILY SSF51197 2 102 8.79E-35 T 29-03-2018 AM354_RS09565 d5c9ab17f1e37bfe990efe02c8063587 287 SUPERFAMILY SSF53335 98 269 8.82E-26 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 SUPERFAMILY SSF47336 994 1064 1.57E-13 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 SMART SM00823 Phosphopantetheine attachment site 2512 2581 0.045 T 29-03-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 SMART SM00823 Phosphopantetheine attachment site 1001 1069 0.03 T 29-03-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 Gene3D G3DSA:1.10.1200.10 2518 2590 2.8E-16 T 29-03-2018 AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 SUPERFAMILY SSF56801 438 1013 5.23E-140 T 29-03-2018 AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 SMART SM00824 Thioesterase 2606 2829 2.3E-4 T 29-03-2018 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 Gene3D G3DSA:3.40.50.1820 2591 2830 1.6E-19 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 Gene3D G3DSA:3.30.559.10 1 222 4.6E-17 T 29-03-2018 AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 Pfam PF13193 AMP-binding enzyme C-terminal domain 898 976 1.7E-9 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 Pfam PF13193 AMP-binding enzyme C-terminal domain 2405 2488 5.8E-7 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 SUPERFAMILY SSF52777 206 442 6.34E-36 T 29-03-2018 AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 501 914 3.1E-112 T 29-03-2018 IPR010071 Amino acid adenylation domain AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 2016 2421 3.1E-129 T 29-03-2018 IPR010071 Amino acid adenylation domain AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 Pfam PF00550 Phosphopantetheine attachment site 2514 2577 2.7E-8 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 Pfam PF00550 Phosphopantetheine attachment site 1003 1064 1.6E-9 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 Pfam PF00668 Condensation domain 1097 1509 1.1E-39 T 29-03-2018 IPR001242 Condensation domain AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 Pfam PF00668 Condensation domain 15 458 2.3E-66 T 29-03-2018 IPR001242 Condensation domain AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 Pfam PF00668 Condensation domain 1553 1975 3.0E-65 T 29-03-2018 IPR001242 Condensation domain AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 Gene3D G3DSA:1.10.1200.10 1007 1073 1.7E-17 T 29-03-2018 AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 ProSitePatterns PS00455 Putative AMP-binding domain signature. 628 639 - T 29-03-2018 IPR020845 AMP-binding, conserved site AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 Pfam PF00975 Thioesterase domain 2605 2819 1.4E-35 T 29-03-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 Gene3D G3DSA:3.40.50.980 634 801 7.6E-28 T 29-03-2018 AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 Gene3D G3DSA:3.40.50.980 2140 2301 1.4E-40 T 29-03-2018 AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 SUPERFAMILY SSF56801 1935 2524 4.97E-150 T 29-03-2018 AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 SUPERFAMILY SSF47336 2506 2578 3.01E-13 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 SUPERFAMILY SSF52777 21 199 2.56E-26 T 29-03-2018 AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2536 2551 - T 29-03-2018 IPR006162 Phosphopantetheine attachment site AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1025 1040 - T 29-03-2018 IPR006162 Phosphopantetheine attachment site AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 Gene3D G3DSA:3.30.559.10 1074 1273 1.2E-20 T 29-03-2018 AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 Gene3D G3DSA:3.30.300.30 2392 2517 9.6E-31 T 29-03-2018 AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 Gene3D G3DSA:3.30.300.30 885 1006 1.3E-33 T 29-03-2018 AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 1378 1516 1.5E-24 T 29-03-2018 IPR010060 Non-ribosomal peptide synthase AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 Gene3D G3DSA:3.40.50.980 472 633 2.8E-43 T 29-03-2018 AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 Gene3D G3DSA:3.40.50.980 1986 2139 7.0E-44 T 29-03-2018 AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 SUPERFAMILY SSF52777 1255 1515 3.89E-27 T 29-03-2018 AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 SUPERFAMILY SSF52777 1730 1968 2.78E-46 T 29-03-2018 AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 SUPERFAMILY SSF52777 1087 1269 6.0E-26 T 29-03-2018 AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 Gene3D G3DSA:2.30.38.10 2307 2387 3.6E-23 T 29-03-2018 AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 Gene3D G3DSA:2.30.38.10 802 880 4.1E-23 T 29-03-2018 AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 ProSitePatterns PS00455 Putative AMP-binding domain signature. 2134 2145 - T 29-03-2018 IPR020845 AMP-binding, conserved site AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 Pfam PF00501 AMP-binding enzyme 480 890 2.6E-86 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 Pfam PF00501 AMP-binding enzyme 1996 2397 2.3E-97 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 SUPERFAMILY SSF52777 1550 1744 2.33E-29 T 29-03-2018 AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 SUPERFAMILY SSF53474 2587 2829 5.17E-49 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS02005 5e035f00b0ea324a8963fddb401b97d5 2836 Gene3D G3DSA:3.30.559.10 1534 1737 2.1E-30 T 29-03-2018 AM354_RS09620 f807591dfd4153c3d8806a632bf2a2eb 533 Gene3D G3DSA:3.90.76.10 38 203 4.8E-33 T 29-03-2018 AM354_RS09620 f807591dfd4153c3d8806a632bf2a2eb 533 SUPERFAMILY SSF53850 30 524 5.79E-146 T 29-03-2018 AM354_RS09620 f807591dfd4153c3d8806a632bf2a2eb 533 Gene3D G3DSA:3.40.190.10 204 299 1.2E-24 T 29-03-2018 AM354_RS09620 f807591dfd4153c3d8806a632bf2a2eb 533 Gene3D G3DSA:3.10.105.10 300 503 1.7E-62 T 29-03-2018 AM354_RS09620 f807591dfd4153c3d8806a632bf2a2eb 533 PIRSF PIRSF002741 14 532 3.2E-108 T 29-03-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AM354_RS09620 f807591dfd4153c3d8806a632bf2a2eb 533 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 74 447 3.0E-95 T 29-03-2018 IPR000914 Solute-binding protein family 5 domain AM354_RS01720 dd5defa3b4fb5fcc768c4a0aa89aced3 1038 SUPERFAMILY SSF82866 840 1026 5.1E-40 T 29-03-2018 AM354_RS01720 dd5defa3b4fb5fcc768c4a0aa89aced3 1038 SUPERFAMILY SSF82866 297 497 1.29E-48 T 29-03-2018 AM354_RS01720 dd5defa3b4fb5fcc768c4a0aa89aced3 1038 SUPERFAMILY SSF82714 726 809 4.84E-19 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS01720 dd5defa3b4fb5fcc768c4a0aa89aced3 1038 SUPERFAMILY SSF82693 39 132 2.88E-28 T 29-03-2018 AM354_RS01720 dd5defa3b4fb5fcc768c4a0aa89aced3 1038 SUPERFAMILY SSF82693 811 857 1.15E-19 T 29-03-2018 AM354_RS01720 dd5defa3b4fb5fcc768c4a0aa89aced3 1038 SUPERFAMILY SSF82693 675 724 1.15E-19 T 29-03-2018 AM354_RS01720 dd5defa3b4fb5fcc768c4a0aa89aced3 1038 Gene3D G3DSA:3.30.70.1430 566 670 8.8E-14 T 29-03-2018 AM354_RS01720 dd5defa3b4fb5fcc768c4a0aa89aced3 1038 Gene3D G3DSA:1.20.1640.10 812 1030 8.8E-37 T 29-03-2018 AM354_RS01720 dd5defa3b4fb5fcc768c4a0aa89aced3 1038 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 2 1033 0.0 T 29-03-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 AM354_RS01720 dd5defa3b4fb5fcc768c4a0aa89aced3 1038 PRINTS PR00702 Acriflavin resistance protein family signature 551 568 1.3E-103 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS01720 dd5defa3b4fb5fcc768c4a0aa89aced3 1038 PRINTS PR00702 Acriflavin resistance protein family signature 37 55 1.3E-103 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS01720 dd5defa3b4fb5fcc768c4a0aa89aced3 1038 PRINTS PR00702 Acriflavin resistance protein family signature 364 385 1.3E-103 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS01720 dd5defa3b4fb5fcc768c4a0aa89aced3 1038 PRINTS PR00702 Acriflavin resistance protein family signature 392 416 1.3E-103 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS01720 dd5defa3b4fb5fcc768c4a0aa89aced3 1038 PRINTS PR00702 Acriflavin resistance protein family signature 446 469 1.3E-103 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS01720 dd5defa3b4fb5fcc768c4a0aa89aced3 1038 PRINTS PR00702 Acriflavin resistance protein family signature 471 494 1.3E-103 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS01720 dd5defa3b4fb5fcc768c4a0aa89aced3 1038 PRINTS PR00702 Acriflavin resistance protein family signature 620 634 1.3E-103 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS01720 dd5defa3b4fb5fcc768c4a0aa89aced3 1038 PRINTS PR00702 Acriflavin resistance protein family signature 9 33 1.3E-103 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS01720 dd5defa3b4fb5fcc768c4a0aa89aced3 1038 PRINTS PR00702 Acriflavin resistance protein family signature 337 360 1.3E-103 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS01720 dd5defa3b4fb5fcc768c4a0aa89aced3 1038 SUPERFAMILY SSF82714 183 273 1.22E-22 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS01720 dd5defa3b4fb5fcc768c4a0aa89aced3 1038 Gene3D G3DSA:3.30.70.1430 39 141 5.5E-29 T 29-03-2018 AM354_RS01720 dd5defa3b4fb5fcc768c4a0aa89aced3 1038 Gene3D G3DSA:3.30.2090.10 181 276 1.6E-19 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS01720 dd5defa3b4fb5fcc768c4a0aa89aced3 1038 Pfam PF00873 AcrB/AcrD/AcrF family 3 1027 0.0 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS01720 dd5defa3b4fb5fcc768c4a0aa89aced3 1038 SUPERFAMILY SSF82693 275 331 3.66E-25 T 29-03-2018 AM354_RS01720 dd5defa3b4fb5fcc768c4a0aa89aced3 1038 SUPERFAMILY SSF82693 137 183 3.66E-25 T 29-03-2018 AM354_RS01720 dd5defa3b4fb5fcc768c4a0aa89aced3 1038 Gene3D G3DSA:1.20.1640.10 287 509 3.1E-45 T 29-03-2018 AM354_RS01720 dd5defa3b4fb5fcc768c4a0aa89aced3 1038 Gene3D G3DSA:3.30.70.1440 675 771 3.5E-16 T 29-03-2018 AM354_RS01720 dd5defa3b4fb5fcc768c4a0aa89aced3 1038 SUPERFAMILY SSF82693 564 674 1.41E-22 T 29-03-2018 AM354_RS08365 0d3928c127226634663627a9aaea23ea 631 Pfam PF03717 Penicillin-binding Protein dimerisation domain 65 240 2.0E-46 T 29-03-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AM354_RS08365 0d3928c127226634663627a9aaea23ea 631 Gene3D G3DSA:3.40.710.10 251 616 3.4E-86 T 29-03-2018 AM354_RS08365 0d3928c127226634663627a9aaea23ea 631 Pfam PF00905 Penicillin binding protein transpeptidase domain 273 607 4.8E-87 T 29-03-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AM354_RS08365 0d3928c127226634663627a9aaea23ea 631 SUPERFAMILY SSF56519 57 254 7.72E-52 T 29-03-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AM354_RS08365 0d3928c127226634663627a9aaea23ea 631 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 20 610 1.3E-237 T 29-03-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0016020 AM354_RS08365 0d3928c127226634663627a9aaea23ea 631 Gene3D G3DSA:3.90.1310.10 34 250 1.5E-54 T 29-03-2018 AM354_RS08365 0d3928c127226634663627a9aaea23ea 631 SUPERFAMILY SSF56601 255 610 5.47E-94 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM354_RS09175 db6173b135b6bf5ea15c6358d79ddaef 306 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 88 104 - T 29-03-2018 IPR033749 Polyprenyl synthetase, conserved site AM354_RS09175 db6173b135b6bf5ea15c6358d79ddaef 306 Gene3D G3DSA:1.10.600.10 269 306 0.03 T 29-03-2018 IPR008949 Isoprenoid synthase domain AM354_RS09175 db6173b135b6bf5ea15c6358d79ddaef 306 Gene3D G3DSA:1.10.600.10 2 268 1.3E-77 T 29-03-2018 IPR008949 Isoprenoid synthase domain AM354_RS09175 db6173b135b6bf5ea15c6358d79ddaef 306 SUPERFAMILY SSF48576 10 288 3.7E-85 T 29-03-2018 IPR008949 Isoprenoid synthase domain AM354_RS09175 db6173b135b6bf5ea15c6358d79ddaef 306 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 222 234 - T 29-03-2018 IPR033749 Polyprenyl synthetase, conserved site AM354_RS09175 db6173b135b6bf5ea15c6358d79ddaef 306 Pfam PF00348 Polyprenyl synthetase 42 269 3.4E-56 T 29-03-2018 IPR000092 Polyprenyl synthetase GO:0008299 AM354_RS17620 12a5104596068f89879f1e1bebe1a33f 106 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 56 71 7.7E-23 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS17620 12a5104596068f89879f1e1bebe1a33f 106 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 28 39 7.7E-23 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS17620 12a5104596068f89879f1e1bebe1a33f 106 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 41 56 7.7E-23 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS17620 12a5104596068f89879f1e1bebe1a33f 106 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 8 23 7.7E-23 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS17620 12a5104596068f89879f1e1bebe1a33f 106 ProSitePatterns PS00846 Bacterial regulatory proteins, arsR family signature. 30 48 - T 29-03-2018 IPR018334 ArsR-type transcription regulator, HTH motif GO:0003700|GO:0005622|GO:0006355 AM354_RS17620 12a5104596068f89879f1e1bebe1a33f 106 SUPERFAMILY SSF46785 2 98 9.16E-25 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS17620 12a5104596068f89879f1e1bebe1a33f 106 Pfam PF01022 Bacterial regulatory protein, arsR family 13 58 6.5E-15 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS17620 12a5104596068f89879f1e1bebe1a33f 106 SMART SM00418 6 84 1.4E-30 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS17620 12a5104596068f89879f1e1bebe1a33f 106 Gene3D G3DSA:1.10.10.10 3 102 2.1E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS15655 c55ee21396e7080efc3bb23488c22619 135 Pfam PF01479 S4 domain 11 56 3.2E-12 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM354_RS15655 c55ee21396e7080efc3bb23488c22619 135 PIRSF PIRSF016821 8 135 2.8E-42 T 29-03-2018 IPR025708 Heat shock protein 15 GO:0003677|GO:0003727|GO:0034605|GO:0043023 AM354_RS15655 c55ee21396e7080efc3bb23488c22619 135 SUPERFAMILY SSF55174 11 105 2.09E-29 T 29-03-2018 AM354_RS15655 c55ee21396e7080efc3bb23488c22619 135 SMART SM00363 11 74 7.6E-9 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM354_RS15655 c55ee21396e7080efc3bb23488c22619 135 Gene3D G3DSA:3.10.290.10 4 107 6.0E-26 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM354_RS20385 642cac48eaa967cb00ab14b8f664e84c 436 Gene3D G3DSA:1.20.1250.20 237 433 5.6E-20 T 29-03-2018 AM354_RS20385 642cac48eaa967cb00ab14b8f664e84c 436 Gene3D G3DSA:1.20.1250.20 22 236 5.3E-25 T 29-03-2018 AM354_RS20385 642cac48eaa967cb00ab14b8f664e84c 436 ProSitePatterns PS00217 Sugar transport proteins signature 2. 137 162 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM354_RS20385 642cac48eaa967cb00ab14b8f664e84c 436 ProSitePatterns PS00216 Sugar transport proteins signature 1. 303 320 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM354_RS20385 642cac48eaa967cb00ab14b8f664e84c 436 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 34 420 8.6E-138 T 29-03-2018 IPR004736 Citrate-proton symport GO:0005215|GO:0006810|GO:0016021 AM354_RS20385 642cac48eaa967cb00ab14b8f664e84c 436 SUPERFAMILY SSF103473 21 433 1.7E-66 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS20385 642cac48eaa967cb00ab14b8f664e84c 436 Pfam PF00083 Sugar (and other) transporter 229 422 2.0E-12 T 29-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AM354_RS20385 642cac48eaa967cb00ab14b8f664e84c 436 Pfam PF00083 Sugar (and other) transporter 29 225 1.0E-27 T 29-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AM354_RS18045 64dc432a62f40064d1d1086bb316a531 456 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 19 36 - T 29-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AM354_RS18045 64dc432a62f40064d1d1086bb316a531 456 Gene3D G3DSA:3.30.1360.60 4 80 4.6E-26 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM354_RS18045 64dc432a62f40064d1d1086bb316a531 456 SUPERFAMILY SSF55604 7 80 1.57E-20 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM354_RS18045 64dc432a62f40064d1d1086bb316a531 456 TIGRFAM TIGR00852 pts-Glc: PTS system, maltose and glucose-specific subfamily, IIC component 153 437 4.9E-89 T 29-03-2018 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component GO:0008982|GO:0009401|GO:0016021 AM354_RS18045 64dc432a62f40064d1d1086bb316a531 456 Pfam PF00367 phosphotransferase system, EIIB 10 41 1.9E-14 T 29-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AM354_RS18045 64dc432a62f40064d1d1086bb316a531 456 TIGRFAM TIGR01996 PTS-II-BC-sucr: PTS system, sucrose-specific IIBC component 5 448 1.7E-191 T 29-03-2018 IPR010973 Phosphotransferase system, sucrose-specific IIBC component GO:0008982|GO:0009401|GO:0016021 AM354_RS18045 64dc432a62f40064d1d1086bb316a531 456 Pfam PF02378 Phosphotransferase system, EIIC 110 395 3.4E-46 T 29-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AM354_RS18045 64dc432a62f40064d1d1086bb316a531 456 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 28 111 3.1E-22 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM354_RS20015 1c9e3cfb8df4a6e4c1c85a6c3f004844 118 Pfam PF07963 Prokaryotic N-terminal methylation motif 11 35 6.6E-5 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site AM354_RS20015 1c9e3cfb8df4a6e4c1c85a6c3f004844 118 Pfam PF12528 Type II secretion prepilin peptidase dependent protein C 37 115 7.7E-27 T 29-03-2018 IPR022204 Prepilin peptidase dependent protein C AM354_RS20015 1c9e3cfb8df4a6e4c1c85a6c3f004844 118 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 12 34 1.7E-4 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site AM354_RS05010 4c7d1fc18d0f3fa0a9b79b68186599a4 852 Pfam PF00535 Glycosyl transferase family 2 255 437 1.1E-23 T 29-03-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AM354_RS05010 4c7d1fc18d0f3fa0a9b79b68186599a4 852 Hamap MF_01072 Glucans biosynthesis glucosyltransferase H [mdoH]. 75 754 52.052 T 29-03-2018 IPR023725 Glucan biosynthesis glucosyltransferase H GO:0016758 AM354_RS05010 4c7d1fc18d0f3fa0a9b79b68186599a4 852 Gene3D G3DSA:3.90.550.10 242 512 7.9E-20 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS05010 4c7d1fc18d0f3fa0a9b79b68186599a4 852 SUPERFAMILY SSF53448 253 541 1.41E-26 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS22780 569c1da30fc8ecfd757fab17a70338c6 160 SMART SM00855 2 115 0.0015 T 29-03-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AM354_RS22780 569c1da30fc8ecfd757fab17a70338c6 160 Gene3D G3DSA:3.40.50.1240 1 154 2.6E-19 T 29-03-2018 IPR029033 Histidine phosphatase superfamily AM354_RS22780 569c1da30fc8ecfd757fab17a70338c6 160 SUPERFAMILY SSF53254 1 142 3.73E-17 T 29-03-2018 IPR029033 Histidine phosphatase superfamily AM354_RS22780 569c1da30fc8ecfd757fab17a70338c6 160 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 70 2.6E-7 T 29-03-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AM354_RS22780 569c1da30fc8ecfd757fab17a70338c6 160 TIGRFAM TIGR00249 sixA: phosphohistidine phosphatase SixA 1 153 2.6E-48 T 29-03-2018 IPR004449 Phosphohistidine phosphatase SixA GO:0005737|GO:0006464|GO:0008969 AM354_RS10720 356b9f62248574acbee3f878fb2d9761 788 Pfam PF03104 DNA polymerase family B, exonuclease domain 74 299 2.2E-10 T 29-03-2018 IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS10720 356b9f62248574acbee3f878fb2d9761 788 Gene3D G3DSA:3.90.1600.10 392 604 5.3E-54 T 29-03-2018 IPR023211 DNA polymerase, palm domain KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS10720 356b9f62248574acbee3f878fb2d9761 788 ProSitePatterns PS00116 DNA polymerase family B signature. 546 554 - T 29-03-2018 IPR017964 DNA-directed DNA polymerase, family B, conserved site GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS10720 356b9f62248574acbee3f878fb2d9761 788 Gene3D G3DSA:3.30.420.10 154 350 1.6E-42 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS10720 356b9f62248574acbee3f878fb2d9761 788 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 418 431 3.6E-10 T 29-03-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS10720 356b9f62248574acbee3f878fb2d9761 788 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 492 504 3.6E-10 T 29-03-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS10720 356b9f62248574acbee3f878fb2d9761 788 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 544 552 3.6E-10 T 29-03-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS10720 356b9f62248574acbee3f878fb2d9761 788 Pfam PF00136 DNA polymerase family B 381 741 1.7E-40 T 29-03-2018 IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain GO:0000166|GO:0003677 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS10720 356b9f62248574acbee3f878fb2d9761 788 SMART SM00486 151 558 1.2E-65 T 29-03-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS10720 356b9f62248574acbee3f878fb2d9761 788 SUPERFAMILY SSF53098 5 392 8.93E-97 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS10720 356b9f62248574acbee3f878fb2d9761 788 SUPERFAMILY SSF56672 388 782 1.0E-114 T 29-03-2018 AM354_RS16865 6b6cd07b4a308f647c1540679c57f8e1 246 Gene3D G3DSA:3.20.20.70 4 245 4.7E-117 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS16865 6b6cd07b4a308f647c1540679c57f8e1 246 SUPERFAMILY SSF51569 64 221 2.37E-5 T 29-03-2018 AM354_RS16865 6b6cd07b4a308f647c1540679c57f8e1 246 Pfam PF07071 KDGP aldolase 8 224 1.0E-110 T 29-03-2018 IPR010763 2-dehydro-3-deoxy-phosphogluconate aldolase KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 AM354_RS16865 6b6cd07b4a308f647c1540679c57f8e1 246 TIGRFAM TIGR03581 EF_0839: conserved hypothetical protein EF_0839/AHA_3917 8 243 4.7E-120 T 29-03-2018 IPR010763 2-dehydro-3-deoxy-phosphogluconate aldolase KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 AM354_RS12765 f19776cbf3ebba07f6161b5479fa2bdd 181 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 9 180 5.5E-71 T 29-03-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AM354_RS12765 f19776cbf3ebba07f6161b5479fa2bdd 181 Gene3D G3DSA:2.30.30.30 122 180 8.0E-22 T 29-03-2018 IPR014722 Ribosomal protein L2 domain 2 AM354_RS12765 f19776cbf3ebba07f6161b5479fa2bdd 181 SUPERFAMILY SSF82679 6 116 3.4E-40 T 29-03-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AM354_RS12765 f19776cbf3ebba07f6161b5479fa2bdd 181 SUPERFAMILY SSF50104 125 180 9.03E-20 T 29-03-2018 IPR008991 Translation protein SH3-like domain AM354_RS12765 f19776cbf3ebba07f6161b5479fa2bdd 181 Gene3D G3DSA:3.30.70.940 6 119 1.2E-41 T 29-03-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AM354_RS12765 f19776cbf3ebba07f6161b5479fa2bdd 181 ProSitePatterns PS01014 Transcription termination factor nusG signature. 164 173 - T 29-03-2018 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site AM354_RS12765 f19776cbf3ebba07f6161b5479fa2bdd 181 Pfam PF00467 KOW motif 130 162 9.7E-8 T 29-03-2018 IPR005824 KOW AM354_RS12765 f19776cbf3ebba07f6161b5479fa2bdd 181 PRINTS PR00338 Transcription termination factor NUSG signature 61 73 1.9E-21 T 29-03-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AM354_RS12765 f19776cbf3ebba07f6161b5479fa2bdd 181 PRINTS PR00338 Transcription termination factor NUSG signature 139 154 1.9E-21 T 29-03-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AM354_RS12765 f19776cbf3ebba07f6161b5479fa2bdd 181 PRINTS PR00338 Transcription termination factor NUSG signature 157 173 1.9E-21 T 29-03-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AM354_RS12765 f19776cbf3ebba07f6161b5479fa2bdd 181 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 6 181 24.694 T 29-03-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AM354_RS12765 f19776cbf3ebba07f6161b5479fa2bdd 181 Pfam PF02357 Transcription termination factor nusG 7 112 2.1E-27 T 29-03-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AM354_RS12765 f19776cbf3ebba07f6161b5479fa2bdd 181 SMART SM00738 6 115 2.0E-50 T 29-03-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AM354_RS12765 f19776cbf3ebba07f6161b5479fa2bdd 181 SMART SM00739 127 154 1.6E-6 T 29-03-2018 IPR005824 KOW AM354_RS15465 a4cf0ddf74e93df2295466f5b2472b0b 367 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 261 275 - T 29-03-2018 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 AM354_RS15465 a4cf0ddf74e93df2295466f5b2472b0b 367 PIRSF PIRSF000148 1 367 2.0E-69 T 29-03-2018 AM354_RS15465 a4cf0ddf74e93df2295466f5b2472b0b 367 SUPERFAMILY SSF55347 134 354 3.27E-79 T 29-03-2018 AM354_RS15465 a4cf0ddf74e93df2295466f5b2472b0b 367 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 144 353 2.1E-58 T 29-03-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AM354_RS15465 a4cf0ddf74e93df2295466f5b2472b0b 367 Gene3D G3DSA:3.40.50.720 1 144 6.1E-19 T 29-03-2018 AM354_RS15465 a4cf0ddf74e93df2295466f5b2472b0b 367 SUPERFAMILY SSF51735 1 147 9.85E-54 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS15465 a4cf0ddf74e93df2295466f5b2472b0b 367 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 1 367 34.148 T 29-03-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 AM354_RS15465 a4cf0ddf74e93df2295466f5b2472b0b 367 TIGRFAM TIGR01745 asd_gamma: aspartate-semialdehyde dehydrogenase 2 367 6.0E-216 T 29-03-2018 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 AM354_RS15465 a4cf0ddf74e93df2295466f5b2472b0b 367 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 3 121 3.4E-24 T 29-03-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AM354_RS15465 a4cf0ddf74e93df2295466f5b2472b0b 367 Gene3D G3DSA:3.30.360.10 145 350 7.9E-61 T 29-03-2018 AM354_RS15465 a4cf0ddf74e93df2295466f5b2472b0b 367 SMART SM00859 3 122 9.0E-25 T 29-03-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AM354_RS09930 cf5cf7be57d67b52fe5375b70aace39c 746 Gene3D G3DSA:2.170.130.10 22 155 3.5E-27 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS09930 cf5cf7be57d67b52fe5375b70aace39c 746 Gene3D G3DSA:2.40.170.20 163 746 2.7E-55 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS09930 cf5cf7be57d67b52fe5375b70aace39c 746 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 47 746 3.0E-138 T 29-03-2018 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 AM354_RS09930 cf5cf7be57d67b52fe5375b70aace39c 746 Pfam PF00593 TonB dependent receptor 240 743 3.8E-28 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS09930 cf5cf7be57d67b52fe5375b70aace39c 746 Pfam PF07715 TonB-dependent Receptor Plug Domain 46 147 1.5E-18 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS09930 cf5cf7be57d67b52fe5375b70aace39c 746 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 729 746 - T 29-03-2018 IPR010917 TonB-dependent receptor, conserved site AM354_RS09930 cf5cf7be57d67b52fe5375b70aace39c 746 SUPERFAMILY SSF56935 472 744 9.89E-98 T 29-03-2018 AM354_RS09930 cf5cf7be57d67b52fe5375b70aace39c 746 SUPERFAMILY SSF56935 32 441 9.89E-98 T 29-03-2018 AM354_RS06475 bea03d3303673d8a94fe1ec826f484d4 372 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 3 370 1.0E-226 T 29-03-2018 IPR014183 Alcohol dehydrogenase class III GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00620+1.1.1.28|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00680+1.1.1.284|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6454|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-6901|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396|MetaCyc: PWY-7798|Reactome: R-HSA-71384 AM354_RS06475 bea03d3303673d8a94fe1ec826f484d4 372 Pfam PF00107 Zinc-binding dehydrogenase 198 317 7.1E-24 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AM354_RS06475 bea03d3303673d8a94fe1ec826f484d4 372 SUPERFAMILY SSF51735 161 335 1.05E-48 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS06475 bea03d3303673d8a94fe1ec826f484d4 372 SUPERFAMILY SSF50129 319 370 2.78E-12 T 29-03-2018 IPR011032 GroES-like AM354_RS06475 bea03d3303673d8a94fe1ec826f484d4 372 Gene3D G3DSA:3.40.50.720 189 311 2.0E-25 T 29-03-2018 AM354_RS06475 bea03d3303673d8a94fe1ec826f484d4 372 SMART SM00829 11 368 1.4E-4 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AM354_RS06475 bea03d3303673d8a94fe1ec826f484d4 372 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 62 76 - T 29-03-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AM354_RS06475 bea03d3303673d8a94fe1ec826f484d4 372 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 155 2.0E-26 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AM354_RS06475 bea03d3303673d8a94fe1ec826f484d4 372 Gene3D G3DSA:3.90.180.10 1 188 7.1E-65 T 29-03-2018 AM354_RS06475 bea03d3303673d8a94fe1ec826f484d4 372 SUPERFAMILY SSF50129 1 187 5.48E-75 T 29-03-2018 IPR011032 GroES-like AM354_RS10810 8f773d6615e4681b2577258d3874380d 382 Gene3D G3DSA:3.50.30.20 2 151 4.7E-63 T 29-03-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM354_RS10810 8f773d6615e4681b2577258d3874380d 382 SUPERFAMILY SSF52317 153 377 3.4E-65 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS10810 8f773d6615e4681b2577258d3874380d 382 PRINTS PR00096 Glutamine amidotransferase superfamily signature 349 362 3.2E-11 T 29-03-2018 AM354_RS10810 8f773d6615e4681b2577258d3874380d 382 PRINTS PR00096 Glutamine amidotransferase superfamily signature 264 275 3.2E-11 T 29-03-2018 AM354_RS10810 8f773d6615e4681b2577258d3874380d 382 PRINTS PR00096 Glutamine amidotransferase superfamily signature 236 245 3.2E-11 T 29-03-2018 AM354_RS10810 8f773d6615e4681b2577258d3874380d 382 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 5 375 4.3E-151 T 29-03-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM354_RS10810 8f773d6615e4681b2577258d3874380d 382 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 306 317 2.3E-39 T 29-03-2018 AM354_RS10810 8f773d6615e4681b2577258d3874380d 382 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 264 280 2.3E-39 T 29-03-2018 AM354_RS10810 8f773d6615e4681b2577258d3874380d 382 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 194 208 2.3E-39 T 29-03-2018 AM354_RS10810 8f773d6615e4681b2577258d3874380d 382 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 281 298 2.3E-39 T 29-03-2018 AM354_RS10810 8f773d6615e4681b2577258d3874380d 382 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 233 247 2.3E-39 T 29-03-2018 AM354_RS10810 8f773d6615e4681b2577258d3874380d 382 SUPERFAMILY SSF52021 3 142 3.4E-57 T 29-03-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM354_RS10810 8f773d6615e4681b2577258d3874380d 382 Gene3D G3DSA:3.40.50.880 152 379 6.1E-69 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS10810 8f773d6615e4681b2577258d3874380d 382 Pfam PF00117 Glutamine amidotransferase class-I 198 372 1.3E-49 T 29-03-2018 IPR017926 Glutamine amidotransferase AM354_RS10810 8f773d6615e4681b2577258d3874380d 382 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 3 378 48.423 T 29-03-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM354_RS10810 8f773d6615e4681b2577258d3874380d 382 SMART SM01097 3 133 4.7E-92 T 29-03-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM354_RS10810 8f773d6615e4681b2577258d3874380d 382 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 5 132 2.2E-52 T 29-03-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM354_RS10810 8f773d6615e4681b2577258d3874380d 382 PRINTS PR00097 Anthranilate synthase component II signature 264 275 1.1E-5 T 29-03-2018 AM354_RS10810 8f773d6615e4681b2577258d3874380d 382 PRINTS PR00097 Anthranilate synthase component II signature 236 245 1.1E-5 T 29-03-2018 AM354_RS10810 8f773d6615e4681b2577258d3874380d 382 PRINTS PR00097 Anthranilate synthase component II signature 349 362 1.1E-5 T 29-03-2018 AM354_RS17265 83b8934aab5b0f573171797dcec85b58 582 Pfam PF13155 Toprim-like 263 348 1.6E-14 T 29-03-2018 AM354_RS17265 83b8934aab5b0f573171797dcec85b58 582 Hamap MF_00974 DNA primase [dnaG]. 4 579 30.472 T 29-03-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 AM354_RS17265 83b8934aab5b0f573171797dcec85b58 582 SUPERFAMILY SSF117023 447 578 9.42E-44 T 29-03-2018 AM354_RS17265 83b8934aab5b0f573171797dcec85b58 582 Pfam PF08278 DNA primase DnaG DnaB-binding 451 574 6.9E-35 T 29-03-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 AM354_RS17265 83b8934aab5b0f573171797dcec85b58 582 Pfam PF01807 CHC2 zinc finger 7 100 1.4E-40 T 29-03-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 AM354_RS17265 83b8934aab5b0f573171797dcec85b58 582 Pfam PF10410 DnaB-helicase binding domain of primase 370 424 2.1E-12 T 29-03-2018 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 AM354_RS17265 83b8934aab5b0f573171797dcec85b58 582 Gene3D G3DSA:3.90.580.10 1 102 5.8E-35 T 29-03-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 AM354_RS17265 83b8934aab5b0f573171797dcec85b58 582 TIGRFAM TIGR01391 dnaG: DNA primase 4 419 6.3E-151 T 29-03-2018 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 AM354_RS17265 83b8934aab5b0f573171797dcec85b58 582 SMART SM00766 450 575 3.5E-51 T 29-03-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 AM354_RS17265 83b8934aab5b0f573171797dcec85b58 582 Gene3D G3DSA:1.10.860.10 434 581 3.6E-38 T 29-03-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal AM354_RS17265 83b8934aab5b0f573171797dcec85b58 582 SUPERFAMILY SSF57783 4 100 2.38E-35 T 29-03-2018 AM354_RS17265 83b8934aab5b0f573171797dcec85b58 582 Gene3D G3DSA:3.40.1360.10 241 368 5.3E-33 T 29-03-2018 AM354_RS17265 83b8934aab5b0f573171797dcec85b58 582 SUPERFAMILY SSF56731 115 427 9.59E-115 T 29-03-2018 AM354_RS17265 83b8934aab5b0f573171797dcec85b58 582 SMART SM00400 36 90 2.2E-36 T 29-03-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 AM354_RS17265 83b8934aab5b0f573171797dcec85b58 582 Gene3D G3DSA:3.90.980.10 109 240 3.7E-45 T 29-03-2018 IPR013264 DNA primase, catalytic core, N-terminal AM354_RS17265 83b8934aab5b0f573171797dcec85b58 582 Pfam PF08275 DNA primase catalytic core, N-terminal domain 126 251 3.9E-43 T 29-03-2018 IPR013264 DNA primase, catalytic core, N-terminal AM354_RS17265 83b8934aab5b0f573171797dcec85b58 582 SMART SM00493 259 330 3.0E-22 T 29-03-2018 IPR006171 TOPRIM domain AM354_RS17265 83b8934aab5b0f573171797dcec85b58 582 Gene3D G3DSA:1.20.50.20 369 417 9.2E-21 T 29-03-2018 AM354_RS17265 83b8934aab5b0f573171797dcec85b58 582 PIRSF PIRSF002811 2 582 3.9E-147 T 29-03-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 AM354_RS08930 14c867a38d5a43a7b8c370f71bb44cb4 300 Gene3D G3DSA:1.10.40.60 154 191 3.9E-4 T 29-03-2018 AM354_RS08930 14c867a38d5a43a7b8c370f71bb44cb4 300 SUPERFAMILY SSF158544 192 249 1.2E-9 T 29-03-2018 AM354_RS08930 14c867a38d5a43a7b8c370f71bb44cb4 300 Pfam PF03934 Type II secretion system (T2SS), protein K 30 290 1.3E-38 T 29-03-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 AM354_RS08930 14c867a38d5a43a7b8c370f71bb44cb4 300 SUPERFAMILY SSF158544 96 188 4.97E-12 T 29-03-2018 AM354_RS08930 14c867a38d5a43a7b8c370f71bb44cb4 300 Gene3D G3DSA:1.10.40.60 193 255 7.3E-12 T 29-03-2018 AM354_RS08930 14c867a38d5a43a7b8c370f71bb44cb4 300 PIRSF PIRSF002786 1 298 1.5E-36 T 29-03-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 AM354_RS08930 14c867a38d5a43a7b8c370f71bb44cb4 300 Gene3D G3DSA:3.30.1300.30 26 151 5.9E-10 T 29-03-2018 AM354_RS11750 8aa2b5c8a212a474607738e0249babcd 796 SUPERFAMILY SSF51445 520 599 5.59E-109 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily AM354_RS11750 8aa2b5c8a212a474607738e0249babcd 796 SUPERFAMILY SSF51445 161 418 5.59E-109 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily AM354_RS11750 8aa2b5c8a212a474607738e0249babcd 796 SUPERFAMILY SSF55545 30 160 2.22E-24 T 29-03-2018 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 AM354_RS11750 8aa2b5c8a212a474607738e0249babcd 796 Pfam PF02838 Glycosyl hydrolase family 20, domain 2 30 157 1.6E-14 T 29-03-2018 IPR015882 Beta-hexosaminidase, bacteial type, N-terminal KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822 AM354_RS11750 8aa2b5c8a212a474607738e0249babcd 796 Gene3D G3DSA:3.20.20.80 160 627 2.0E-131 T 29-03-2018 AM354_RS11750 8aa2b5c8a212a474607738e0249babcd 796 PRINTS PR00738 Glycosyl hydrolase family 20 signature 120 140 7.1E-48 T 29-03-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 AM354_RS11750 8aa2b5c8a212a474607738e0249babcd 796 PRINTS PR00738 Glycosyl hydrolase family 20 signature 236 253 7.1E-48 T 29-03-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 AM354_RS11750 8aa2b5c8a212a474607738e0249babcd 796 PRINTS PR00738 Glycosyl hydrolase family 20 signature 551 567 7.1E-48 T 29-03-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 AM354_RS11750 8aa2b5c8a212a474607738e0249babcd 796 PRINTS PR00738 Glycosyl hydrolase family 20 signature 184 205 7.1E-48 T 29-03-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 AM354_RS11750 8aa2b5c8a212a474607738e0249babcd 796 PRINTS PR00738 Glycosyl hydrolase family 20 signature 568 585 7.1E-48 T 29-03-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 AM354_RS11750 8aa2b5c8a212a474607738e0249babcd 796 PRINTS PR00738 Glycosyl hydrolase family 20 signature 155 172 7.1E-48 T 29-03-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 AM354_RS11750 8aa2b5c8a212a474607738e0249babcd 796 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 161 586 9.5E-102 T 29-03-2018 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822 AM354_RS11750 8aa2b5c8a212a474607738e0249babcd 796 Gene3D G3DSA:3.30.379.10 26 159 1.6E-25 T 29-03-2018 AM354_RS20145 21512c2ff3c80ef0732a78f80464c761 256 Pfam PF00849 RNA pseudouridylate synthase 10 170 9.2E-35 T 29-03-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS20145 21512c2ff3c80ef0732a78f80464c761 256 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 50 64 - T 29-03-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS20145 21512c2ff3c80ef0732a78f80464c761 256 SUPERFAMILY SSF55120 3 236 2.72E-66 T 29-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS20145 21512c2ff3c80ef0732a78f80464c761 256 Gene3D G3DSA:3.30.2350.10 1 237 3.5E-65 T 29-03-2018 AM354_RS15755 03e7b7a6c3e868944afa318d6ee1de41 849 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 105 114 3.1E-9 T 29-03-2018 AM354_RS15755 03e7b7a6c3e868944afa318d6ee1de41 849 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 276 283 3.1E-9 T 29-03-2018 AM354_RS15755 03e7b7a6c3e868944afa318d6ee1de41 849 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 172 3.1E-9 T 29-03-2018 AM354_RS15755 03e7b7a6c3e868944afa318d6ee1de41 849 SUPERFAMILY SSF55124 501 626 4.09E-31 T 29-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM354_RS15755 03e7b7a6c3e868944afa318d6ee1de41 849 Gene3D G3DSA:3.50.50.60 1 127 3.2E-12 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS15755 03e7b7a6c3e868944afa318d6ee1de41 849 Gene3D G3DSA:3.30.413.10 630 815 8.6E-35 T 29-03-2018 AM354_RS15755 03e7b7a6c3e868944afa318d6ee1de41 849 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 559 621 2.5E-11 T 29-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM354_RS15755 03e7b7a6c3e868944afa318d6ee1de41 849 PIRSF PIRSF037149 1 834 0.0 T 29-03-2018 IPR017121 Nitrite reductase [NAD(P)H], large subunit GO:0042128 AM354_RS15755 03e7b7a6c3e868944afa318d6ee1de41 849 Pfam PF04324 BFD-like [2Fe-2S] binding domain 423 470 7.2E-15 T 29-03-2018 IPR007419 BFD-like [2Fe-2S]-binding domain AM354_RS15755 03e7b7a6c3e868944afa318d6ee1de41 849 Gene3D G3DSA:3.90.480.10 492 627 9.3E-16 T 29-03-2018 AM354_RS15755 03e7b7a6c3e868944afa318d6ee1de41 849 SUPERFAMILY SSF56014 632 808 1.57E-47 T 29-03-2018 AM354_RS15755 03e7b7a6c3e868944afa318d6ee1de41 849 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 678 694 - T 29-03-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM354_RS15755 03e7b7a6c3e868944afa318d6ee1de41 849 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 632 767 1.8E-14 T 29-03-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM354_RS15755 03e7b7a6c3e868944afa318d6ee1de41 849 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 6 800 0.0 T 29-03-2018 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 AM354_RS15755 03e7b7a6c3e868944afa318d6ee1de41 849 Gene3D G3DSA:3.40.50.720 128 310 8.8E-34 T 29-03-2018 AM354_RS15755 03e7b7a6c3e868944afa318d6ee1de41 849 SUPERFAMILY SSF51905 104 311 7.6E-40 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS15755 03e7b7a6c3e868944afa318d6ee1de41 849 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 292 6.9E-52 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS15755 03e7b7a6c3e868944afa318d6ee1de41 849 PRINTS PR00397 Sirohaem Fe-binding site signature 635 653 7.9E-6 T 29-03-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM354_RS15755 03e7b7a6c3e868944afa318d6ee1de41 849 PRINTS PR00397 Sirohaem Fe-binding site signature 678 696 7.9E-6 T 29-03-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM354_RS15755 03e7b7a6c3e868944afa318d6ee1de41 849 SUPERFAMILY SSF51905 1 137 1.04E-18 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS15755 03e7b7a6c3e868944afa318d6ee1de41 849 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 283 2.6E-12 T 29-03-2018 AM354_RS15755 03e7b7a6c3e868944afa318d6ee1de41 849 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 2.6E-12 T 29-03-2018 AM354_RS15755 03e7b7a6c3e868944afa318d6ee1de41 849 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 2.6E-12 T 29-03-2018 AM354_RS18810 10bcb3f05fc37f5ad1c55fa5e7efef62 381 SUPERFAMILY SSF48150 18 241 4.55E-78 T 29-03-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 AM354_RS18810 10bcb3f05fc37f5ad1c55fa5e7efef62 381 Gene3D G3DSA:3.90.79.10 246 370 1.1E-8 T 29-03-2018 AM354_RS18810 10bcb3f05fc37f5ad1c55fa5e7efef62 381 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 21 292 8.5E-125 T 29-03-2018 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 AM354_RS18810 10bcb3f05fc37f5ad1c55fa5e7efef62 381 Pfam PF14815 NUDIX domain 249 359 6.8E-23 T 29-03-2018 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 AM354_RS18810 10bcb3f05fc37f5ad1c55fa5e7efef62 381 SUPERFAMILY SSF55811 236 361 3.04E-23 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 AM354_RS18810 10bcb3f05fc37f5ad1c55fa5e7efef62 381 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 208 224 - T 29-03-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 AM354_RS18810 10bcb3f05fc37f5ad1c55fa5e7efef62 381 Gene3D G3DSA:1.10.340.30 37 134 3.8E-33 T 29-03-2018 AM354_RS18810 10bcb3f05fc37f5ad1c55fa5e7efef62 381 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 52 184 4.5E-22 T 29-03-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AM354_RS18810 10bcb3f05fc37f5ad1c55fa5e7efef62 381 Gene3D G3DSA:1.10.1670.10 135 241 2.6E-34 T 29-03-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 AM354_RS18810 10bcb3f05fc37f5ad1c55fa5e7efef62 381 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 208 224 6.2E-4 T 29-03-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 AM354_RS18810 10bcb3f05fc37f5ad1c55fa5e7efef62 381 SMART SM00525 207 227 7.4E-5 T 29-03-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 AM354_RS18810 10bcb3f05fc37f5ad1c55fa5e7efef62 381 Pfam PF00633 Helix-hairpin-helix motif 116 143 9.5E-8 T 29-03-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 AM354_RS18810 10bcb3f05fc37f5ad1c55fa5e7efef62 381 ProSitePatterns PS01155 Endonuclease III family signature. 118 147 - T 29-03-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 AM354_RS18810 10bcb3f05fc37f5ad1c55fa5e7efef62 381 SMART SM00478 55 206 1.8E-52 T 29-03-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AM354_RS10255 e0485834a5071817aad56df2fedb6e69 208 Gene3D G3DSA:3.40.50.150 2 206 5.7E-40 T 29-03-2018 AM354_RS10255 e0485834a5071817aad56df2fedb6e69 208 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 1 207 5.3E-91 T 29-03-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 AM354_RS10255 e0485834a5071817aad56df2fedb6e69 208 ProSitePatterns PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 130 145 - T 29-03-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 AM354_RS10255 e0485834a5071817aad56df2fedb6e69 208 SUPERFAMILY SSF53335 4 204 3.07E-48 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS10255 e0485834a5071817aad56df2fedb6e69 208 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 6 206 6.5E-77 T 29-03-2018 AM354_RS10255 e0485834a5071817aad56df2fedb6e69 208 Hamap MF_00090 Protein-L-isoaspartate O-methyltransferase [pcm]. 1 208 39.028 T 29-03-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 AM354_RS12150 3d45660ba400beb6af6496a809fe5d9d 334 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 3 194 6.3E-79 T 29-03-2018 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AM354_RS12150 3d45660ba400beb6af6496a809fe5d9d 334 PIRSF PIRSF000904 1 333 5.3E-123 T 29-03-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AM354_RS12150 3d45660ba400beb6af6496a809fe5d9d 334 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 2 330 42.269 T 29-03-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AM354_RS12150 3d45660ba400beb6af6496a809fe5d9d 334 SUPERFAMILY SSF56655 2 327 5.64E-111 T 29-03-2018 AM354_RS12150 3d45660ba400beb6af6496a809fe5d9d 334 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 27 54 2.9E-72 T 29-03-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AM354_RS12150 3d45660ba400beb6af6496a809fe5d9d 334 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 205 232 2.9E-72 T 29-03-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AM354_RS12150 3d45660ba400beb6af6496a809fe5d9d 334 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 148 171 2.9E-72 T 29-03-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AM354_RS12150 3d45660ba400beb6af6496a809fe5d9d 334 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 304 329 2.9E-72 T 29-03-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AM354_RS12150 3d45660ba400beb6af6496a809fe5d9d 334 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 179 202 2.9E-72 T 29-03-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AM354_RS12150 3d45660ba400beb6af6496a809fe5d9d 334 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 64 90 2.9E-72 T 29-03-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AM354_RS12150 3d45660ba400beb6af6496a809fe5d9d 334 Gene3D G3DSA:3.30.540.10 1 195 7.3E-62 T 29-03-2018 AM354_RS12150 3d45660ba400beb6af6496a809fe5d9d 334 Gene3D G3DSA:3.40.190.80 196 331 1.4E-56 T 29-03-2018 AM354_RS12150 3d45660ba400beb6af6496a809fe5d9d 334 PIRSF PIRSF500210 1 333 4.5E-126 T 29-03-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AM354_RS12150 3d45660ba400beb6af6496a809fe5d9d 334 ProSitePatterns PS00124 Fructose-1-6-bisphosphatase active site. 270 282 - T 29-03-2018 IPR020548 Fructose-1,6-bisphosphatase, active site GO:0005975|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AM354_RS12145 78a323a70acc699131b5829633d95a05 459 Pfam PF02875 Mur ligase family, glutamate ligase domain 312 364 2.3E-9 T 29-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AM354_RS12145 78a323a70acc699131b5829633d95a05 459 SUPERFAMILY SSF53623 96 308 2.22E-48 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 AM354_RS12145 78a323a70acc699131b5829633d95a05 459 Gene3D G3DSA:3.40.1190.10 91 313 1.6E-37 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 AM354_RS12145 78a323a70acc699131b5829633d95a05 459 SUPERFAMILY SSF53244 312 449 9.68E-37 T 29-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AM354_RS12145 78a323a70acc699131b5829633d95a05 459 Gene3D G3DSA:3.40.50.720 1 90 4.1E-13 T 29-03-2018 AM354_RS12145 78a323a70acc699131b5829633d95a05 459 Hamap MF_02020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase [mpl]. 1 450 59.279 T 29-03-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 AM354_RS12145 78a323a70acc699131b5829633d95a05 459 Pfam PF01225 Mur ligase family, catalytic domain 2 100 4.7E-19 T 29-03-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 AM354_RS12145 78a323a70acc699131b5829633d95a05 459 TIGRFAM TIGR01081 mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 2 449 4.6E-264 T 29-03-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 AM354_RS12145 78a323a70acc699131b5829633d95a05 459 SUPERFAMILY SSF51984 1 90 2.09E-24 T 29-03-2018 AM354_RS12145 78a323a70acc699131b5829633d95a05 459 Pfam PF08245 Mur ligase middle domain 108 290 3.1E-18 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 AM354_RS12145 78a323a70acc699131b5829633d95a05 459 Gene3D G3DSA:3.90.190.20 314 456 3.9E-27 T 29-03-2018 AM354_RS03365 4fdfbc69e34fcec210e42f896c61450f 183 ProSitePatterns PS00460 Glutathione peroxidases active site. 25 40 - T 29-03-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 AM354_RS03365 4fdfbc69e34fcec210e42f896c61450f 183 Hamap MF_02061 Thioredoxin/glutathione peroxidase BtuE [btuE]. 3 183 52.215 T 29-03-2018 IPR033674 Thioredoxin/glutathione peroxidase BtuE KEGG: 00480+1.11.1.15+1.11.1.9|KEGG: 00590+1.11.1.9|MetaCyc: PWY-4081 AM354_RS03365 4fdfbc69e34fcec210e42f896c61450f 183 PRINTS PR01011 Glutathione peroxidase family signature 23 40 1.1E-18 T 29-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AM354_RS03365 4fdfbc69e34fcec210e42f896c61450f 183 PRINTS PR01011 Glutathione peroxidase family signature 58 74 1.1E-18 T 29-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AM354_RS03365 4fdfbc69e34fcec210e42f896c61450f 183 PRINTS PR01011 Glutathione peroxidase family signature 143 152 1.1E-18 T 29-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AM354_RS03365 4fdfbc69e34fcec210e42f896c61450f 183 Gene3D G3DSA:3.40.30.10 3 183 6.6E-46 T 29-03-2018 AM354_RS03365 4fdfbc69e34fcec210e42f896c61450f 183 PIRSF PIRSF000303 1 183 4.3E-60 T 29-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AM354_RS03365 4fdfbc69e34fcec210e42f896c61450f 183 Pfam PF00255 Glutathione peroxidase 11 111 7.1E-38 T 29-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AM354_RS03365 4fdfbc69e34fcec210e42f896c61450f 183 SUPERFAMILY SSF52833 4 181 3.75E-54 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS10165 3b4ea994966f0a73cb99744a190dc290 875 Pfam PF01411 tRNA synthetases class II (A) 7 556 5.7E-236 T 29-03-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 AM354_RS10165 3b4ea994966f0a73cb99744a190dc290 875 Gene3D G3DSA:3.30.980.10 553 713 1.2E-47 T 29-03-2018 AM354_RS10165 3b4ea994966f0a73cb99744a190dc290 875 Gene3D G3DSA:3.30.930.10 2 252 3.8E-117 T 29-03-2018 AM354_RS10165 3b4ea994966f0a73cb99744a190dc290 875 SUPERFAMILY SSF50447 455 552 1.09E-18 T 29-03-2018 IPR009000 Translation protein, beta-barrel domain AM354_RS10165 3b4ea994966f0a73cb99744a190dc290 875 SUPERFAMILY SSF55681 4 255 1.59E-108 T 29-03-2018 AM354_RS10165 3b4ea994966f0a73cb99744a190dc290 875 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 875 209.455 T 29-03-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 AM354_RS10165 3b4ea994966f0a73cb99744a190dc290 875 Pfam PF02272 DHHA1 domain 732 871 5.9E-31 T 29-03-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 AM354_RS10165 3b4ea994966f0a73cb99744a190dc290 875 SUPERFAMILY SSF101353 256 462 5.89E-60 T 29-03-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 AM354_RS10165 3b4ea994966f0a73cb99744a190dc290 875 SMART SM00863 653 696 9.8E-22 T 29-03-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 AM354_RS10165 3b4ea994966f0a73cb99744a190dc290 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 306 319 3.2E-33 T 29-03-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AM354_RS10165 3b4ea994966f0a73cb99744a190dc290 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 236 249 3.2E-33 T 29-03-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AM354_RS10165 3b4ea994966f0a73cb99744a190dc290 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 76 87 3.2E-33 T 29-03-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AM354_RS10165 3b4ea994966f0a73cb99744a190dc290 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 282 298 3.2E-33 T 29-03-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AM354_RS10165 3b4ea994966f0a73cb99744a190dc290 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 209 220 3.2E-33 T 29-03-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AM354_RS10165 3b4ea994966f0a73cb99744a190dc290 875 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 653 696 7.5E-18 T 29-03-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 AM354_RS10165 3b4ea994966f0a73cb99744a190dc290 875 SUPERFAMILY SSF55186 552 711 3.53E-53 T 29-03-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 AM354_RS10165 3b4ea994966f0a73cb99744a190dc290 875 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 7 854 0.0 T 29-03-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AM354_RS23735 3ec467af5db636f2e3901b1110fd143f 475 Pfam PF08411 Exonuclease C-terminal 210 471 7.7E-109 T 29-03-2018 IPR013620 Exodeoxyribonuclease I, C-terminal GO:0006281|GO:0008852 AM354_RS23735 3ec467af5db636f2e3901b1110fd143f 475 Gene3D G3DSA:3.30.420.10 2 199 2.9E-25 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS23735 3ec467af5db636f2e3901b1110fd143f 475 SUPERFAMILY SSF53098 8 473 2.76E-136 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS23735 3ec467af5db636f2e3901b1110fd143f 475 Pfam PF00929 Exonuclease 11 190 1.9E-27 T 29-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AM354_RS23735 3ec467af5db636f2e3901b1110fd143f 475 PIRSF PIRSF000977 1 475 8.9E-206 T 29-03-2018 IPR023607 Exodeoxyribonuclease I GO:0004529 AM354_RS23735 3ec467af5db636f2e3901b1110fd143f 475 SMART SM00479 8 201 0.0059 T 29-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AM354_RS15490 5191aecaf8e5f2024679ce8d32a38cb4 815 PIRSF PIRSF000460 2 815 7.3E-233 T 29-03-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 AM354_RS15490 5191aecaf8e5f2024679ce8d32a38cb4 815 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 654 666 - T 29-03-2018 IPR035090 Phosphorylase pyridoxal-phosphate attachment site KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 AM354_RS15490 5191aecaf8e5f2024679ce8d32a38cb4 815 SUPERFAMILY SSF53756 9 814 0.0 T 29-03-2018 AM354_RS15490 5191aecaf8e5f2024679ce8d32a38cb4 815 Pfam PF00343 Carbohydrate phosphorylase 102 810 0.0 T 29-03-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 AM354_RS15490 5191aecaf8e5f2024679ce8d32a38cb4 815 Gene3D G3DSA:3.40.50.2000 6 478 3.2E-195 T 29-03-2018 AM354_RS15490 5191aecaf8e5f2024679ce8d32a38cb4 815 Gene3D G3DSA:3.40.50.2000 479 795 1.3E-140 T 29-03-2018 AM354_RS15490 5191aecaf8e5f2024679ce8d32a38cb4 815 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 14 810 0.0 T 29-03-2018 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 AM354_RS10725 e073029aa769e306da1fc5f3f62ffe00 968 Gene3D G3DSA:3.40.50.10810 156 379 6.8E-26 T 29-03-2018 AM354_RS10725 e073029aa769e306da1fc5f3f62ffe00 968 SMART SM00490 517 601 1.2E-15 T 29-03-2018 IPR001650 Helicase, C-terminal AM354_RS10725 e073029aa769e306da1fc5f3f62ffe00 968 Gene3D G3DSA:3.90.550.10 612 753 0.015 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS10725 e073029aa769e306da1fc5f3f62ffe00 968 Hamap MF_01821 RNA polymerase-associated protein RapA [rapA]. 1 966 29.151 T 29-03-2018 IPR023949 RNA polymerase-associated protein RapA GO:0006355 AM354_RS10725 e073029aa769e306da1fc5f3f62ffe00 968 SUPERFAMILY SSF52540 480 643 2.53E-42 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS10725 e073029aa769e306da1fc5f3f62ffe00 968 SUPERFAMILY SSF52540 273 337 2.53E-42 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS10725 e073029aa769e306da1fc5f3f62ffe00 968 Pfam PF00176 SNF2 family N-terminal domain 174 441 3.6E-18 T 29-03-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 AM354_RS10725 e073029aa769e306da1fc5f3f62ffe00 968 SMART SM00487 150 342 7.1E-20 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AM354_RS10725 e073029aa769e306da1fc5f3f62ffe00 968 Pfam PF12137 RNA polymerase recycling family C-terminal 605 965 5.4E-156 T 29-03-2018 IPR022737 RNA polymerase recycling, bacterial, C-terminal GO:0016817 AM354_RS10725 e073029aa769e306da1fc5f3f62ffe00 968 Pfam PF00271 Helicase conserved C-terminal domain 492 601 2.0E-15 T 29-03-2018 IPR001650 Helicase, C-terminal AM354_RS10725 e073029aa769e306da1fc5f3f62ffe00 968 Gene3D G3DSA:3.40.50.300 475 611 1.5E-19 T 29-03-2018 AM354_RS10725 e073029aa769e306da1fc5f3f62ffe00 968 SUPERFAMILY SSF52540 128 378 2.61E-38 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS06680 e53a2cf5077a31fcccc2d102068c4ab0 488 SMART SM00388 266 334 5.3E-17 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS06680 e53a2cf5077a31fcccc2d102068c4ab0 488 SUPERFAMILY SSF47384 249 334 3.14E-18 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS06680 e53a2cf5077a31fcccc2d102068c4ab0 488 Pfam PF00512 His Kinase A (phospho-acceptor) domain 267 334 3.4E-14 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS06680 e53a2cf5077a31fcccc2d102068c4ab0 488 SUPERFAMILY SSF158472 199 256 3.27E-5 T 29-03-2018 AM354_RS06680 e53a2cf5077a31fcccc2d102068c4ab0 488 Gene3D G3DSA:3.30.450.20 28 162 2.2E-8 T 29-03-2018 AM354_RS06680 e53a2cf5077a31fcccc2d102068c4ab0 488 SMART SM00304 199 258 0.0012 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM354_RS06680 e53a2cf5077a31fcccc2d102068c4ab0 488 PRINTS PR00344 Bacterial sensor protein C-terminal signature 449 467 5.4E-8 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS06680 e53a2cf5077a31fcccc2d102068c4ab0 488 PRINTS PR00344 Bacterial sensor protein C-terminal signature 417 431 5.4E-8 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS06680 e53a2cf5077a31fcccc2d102068c4ab0 488 PRINTS PR00344 Bacterial sensor protein C-terminal signature 473 486 5.4E-8 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS06680 e53a2cf5077a31fcccc2d102068c4ab0 488 SUPERFAMILY SSF55874 324 486 6.94E-38 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS06680 e53a2cf5077a31fcccc2d102068c4ab0 488 Gene3D G3DSA:3.30.565.10 340 488 8.7E-36 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS06680 e53a2cf5077a31fcccc2d102068c4ab0 488 Pfam PF00672 HAMP domain 200 254 4.1E-9 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM354_RS06680 e53a2cf5077a31fcccc2d102068c4ab0 488 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 385 487 1.2E-16 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS06680 e53a2cf5077a31fcccc2d102068c4ab0 488 SMART SM00387 380 488 1.9E-23 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS06680 e53a2cf5077a31fcccc2d102068c4ab0 488 Gene3D G3DSA:3.30.450.20 218 270 3.0E-5 T 29-03-2018 AM354_RS06680 e53a2cf5077a31fcccc2d102068c4ab0 488 Gene3D G3DSA:1.10.287.130 271 330 1.8E-15 T 29-03-2018 AM354_RS03410 51f5aca1fd3b3337c334cde160fb111c 642 Pfam PF02824 TGS domain 4 61 6.3E-12 T 29-03-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 AM354_RS03410 51f5aca1fd3b3337c334cde160fb111c 642 Gene3D G3DSA:3.10.20.30 1 64 3.5E-19 T 29-03-2018 IPR012675 Beta-grasp domain AM354_RS03410 51f5aca1fd3b3337c334cde160fb111c 642 Gene3D G3DSA:3.40.50.800 532 642 2.9E-28 T 29-03-2018 IPR004154 Anticodon-binding AM354_RS03410 51f5aca1fd3b3337c334cde160fb111c 642 Pfam PF03129 Anticodon binding domain 541 630 2.5E-23 T 29-03-2018 IPR004154 Anticodon-binding AM354_RS03410 51f5aca1fd3b3337c334cde160fb111c 642 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 319 529 4.8E-48 T 29-03-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS03410 51f5aca1fd3b3337c334cde160fb111c 642 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 72 631 4.5E-241 T 29-03-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AM354_RS03410 51f5aca1fd3b3337c334cde160fb111c 642 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 66 634 33.764 T 29-03-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AM354_RS03410 51f5aca1fd3b3337c334cde160fb111c 642 SUPERFAMILY SSF52954 529 636 2.27E-33 T 29-03-2018 IPR004154 Anticodon-binding AM354_RS03410 51f5aca1fd3b3337c334cde160fb111c 642 Gene3D G3DSA:3.30.930.10 223 531 9.7E-119 T 29-03-2018 AM354_RS03410 51f5aca1fd3b3337c334cde160fb111c 642 SUPERFAMILY SSF81271 3 61 9.81E-17 T 29-03-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 AM354_RS03410 51f5aca1fd3b3337c334cde160fb111c 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 362 385 5.9E-54 T 29-03-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AM354_RS03410 51f5aca1fd3b3337c334cde160fb111c 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 464 492 5.9E-54 T 29-03-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AM354_RS03410 51f5aca1fd3b3337c334cde160fb111c 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 507 520 5.9E-54 T 29-03-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AM354_RS03410 51f5aca1fd3b3337c334cde160fb111c 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 329 357 5.9E-54 T 29-03-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AM354_RS03410 51f5aca1fd3b3337c334cde160fb111c 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 534 546 5.9E-54 T 29-03-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AM354_RS03410 51f5aca1fd3b3337c334cde160fb111c 642 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 172 219 3.8E-14 T 29-03-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 AM354_RS03410 51f5aca1fd3b3337c334cde160fb111c 642 Gene3D G3DSA:3.30.980.10 148 222 1.5E-16 T 29-03-2018 AM354_RS03410 51f5aca1fd3b3337c334cde160fb111c 642 Gene3D G3DSA:3.30.980.10 65 147 6.3E-22 T 29-03-2018 AM354_RS03410 51f5aca1fd3b3337c334cde160fb111c 642 SUPERFAMILY SSF55681 243 525 3.73E-95 T 29-03-2018 AM354_RS03410 51f5aca1fd3b3337c334cde160fb111c 642 SUPERFAMILY SSF55186 63 241 1.57E-64 T 29-03-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 AM354_RS03410 51f5aca1fd3b3337c334cde160fb111c 642 SMART SM00863 170 219 2.6E-19 T 29-03-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 AM354_RS23530 8e0540080f210d8d0f4e85a76dd15c55 398 Gene3D G3DSA:1.20.1250.20 208 398 5.8E-17 T 29-03-2018 AM354_RS23530 8e0540080f210d8d0f4e85a76dd15c55 398 SUPERFAMILY SSF103473 7 396 6.67E-70 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS23530 8e0540080f210d8d0f4e85a76dd15c55 398 Gene3D G3DSA:1.20.1250.20 4 200 1.2E-36 T 29-03-2018 AM354_RS23530 8e0540080f210d8d0f4e85a76dd15c55 398 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 9 390 6.4E-140 T 29-03-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 AM354_RS23530 8e0540080f210d8d0f4e85a76dd15c55 398 Pfam PF07690 Major Facilitator Superfamily 16 358 6.5E-47 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS06250 3ac76e1a032ffeae8348e001d2b96f1f 457 Gene3D G3DSA:3.40.120.10 268 378 1.9E-26 T 29-03-2018 AM354_RS06250 3ac76e1a032ffeae8348e001d2b96f1f 457 Gene3D G3DSA:3.40.120.10 160 267 9.6E-33 T 29-03-2018 AM354_RS06250 3ac76e1a032ffeae8348e001d2b96f1f 457 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 263 373 1.5E-23 T 29-03-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS06250 3ac76e1a032ffeae8348e001d2b96f1f 457 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 154 258 4.2E-24 T 29-03-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS06250 3ac76e1a032ffeae8348e001d2b96f1f 457 SUPERFAMILY SSF53738 263 368 5.89E-31 T 29-03-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS06250 3ac76e1a032ffeae8348e001d2b96f1f 457 SUPERFAMILY SSF53738 4 176 1.88E-40 T 29-03-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS06250 3ac76e1a032ffeae8348e001d2b96f1f 457 SUPERFAMILY SSF53738 152 260 3.85E-28 T 29-03-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS06250 3ac76e1a032ffeae8348e001d2b96f1f 457 Gene3D G3DSA:3.30.310.50 379 456 1.6E-14 T 29-03-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS06250 3ac76e1a032ffeae8348e001d2b96f1f 457 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 92 101 - T 29-03-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS06250 3ac76e1a032ffeae8348e001d2b96f1f 457 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 238 253 2.5E-31 T 29-03-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS06250 3ac76e1a032ffeae8348e001d2b96f1f 457 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 91 105 2.5E-31 T 29-03-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS06250 3ac76e1a032ffeae8348e001d2b96f1f 457 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 209 222 2.5E-31 T 29-03-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS06250 3ac76e1a032ffeae8348e001d2b96f1f 457 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 170 189 2.5E-31 T 29-03-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS06250 3ac76e1a032ffeae8348e001d2b96f1f 457 Gene3D G3DSA:3.40.120.10 1 159 4.4E-41 T 29-03-2018 AM354_RS06250 3ac76e1a032ffeae8348e001d2b96f1f 457 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 378 452 5.3E-11 T 29-03-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS06250 3ac76e1a032ffeae8348e001d2b96f1f 457 SUPERFAMILY SSF55957 373 455 1.92E-19 T 29-03-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS06250 3ac76e1a032ffeae8348e001d2b96f1f 457 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 7 135 8.2E-35 T 29-03-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS10485 491dda8334299b7bf1c8dea59881f3eb 480 Gene3D G3DSA:3.30.450.90 63 199 4.3E-42 T 29-03-2018 AM354_RS10485 491dda8334299b7bf1c8dea59881f3eb 480 Gene3D G3DSA:3.40.50.300 202 474 2.3E-52 T 29-03-2018 AM354_RS10485 491dda8334299b7bf1c8dea59881f3eb 480 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 11 71 2.5E-4 T 29-03-2018 IPR007831 General secretory system II, protein E, N-terminal GO:0005524|GO:0006810 AM354_RS10485 491dda8334299b7bf1c8dea59881f3eb 480 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 296 310 - T 29-03-2018 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 AM354_RS10485 491dda8334299b7bf1c8dea59881f3eb 480 SUPERFAMILY SSF52540 91 470 8.18E-88 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS10485 491dda8334299b7bf1c8dea59881f3eb 480 Pfam PF00437 Type II/IV secretion system protein 108 368 4.4E-81 T 29-03-2018 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 AM354_RS13545 56975f50a1ad57c4097192f17cc0fe50 620 Pfam PF00367 phosphotransferase system, EIIB 9 41 2.4E-13 T 29-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AM354_RS13545 56975f50a1ad57c4097192f17cc0fe50 620 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 19 36 - T 29-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AM354_RS13545 56975f50a1ad57c4097192f17cc0fe50 620 Gene3D G3DSA:2.70.70.10 462 620 5.4E-57 T 29-03-2018 AM354_RS13545 56975f50a1ad57c4097192f17cc0fe50 620 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 474 594 2.2E-47 T 29-03-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 AM354_RS13545 56975f50a1ad57c4097192f17cc0fe50 620 Pfam PF02378 Phosphotransferase system, EIIC 108 392 2.5E-25 T 29-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AM354_RS13545 56975f50a1ad57c4097192f17cc0fe50 620 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 473 598 6.8E-51 T 29-03-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 AM354_RS13545 56975f50a1ad57c4097192f17cc0fe50 620 SUPERFAMILY SSF51261 469 610 9.24E-52 T 29-03-2018 IPR011055 Duplicated hybrid motif AM354_RS13545 56975f50a1ad57c4097192f17cc0fe50 620 TIGRFAM TIGR01995 PTS-II-ABC-beta: PTS system, beta-glucoside-specific IIABC component 3 618 1.5E-216 T 29-03-2018 IPR011297 Phosphotransferase system, beta-glucoside-specific IIABC component GO:0005886|GO:0008982|GO:0009401 AM354_RS13545 56975f50a1ad57c4097192f17cc0fe50 620 Gene3D G3DSA:3.30.1360.60 4 79 2.9E-27 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM354_RS13545 56975f50a1ad57c4097192f17cc0fe50 620 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 536 548 - T 29-03-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 AM354_RS13545 56975f50a1ad57c4097192f17cc0fe50 620 SUPERFAMILY SSF55604 6 79 1.44E-19 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM354_RS06525 8df33e6cf12307445e13399d20fcf120 530 SUPERFAMILY SSF52540 298 523 5.25E-45 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS06525 8df33e6cf12307445e13399d20fcf120 530 Pfam PF00005 ABC transporter 18 184 3.6E-19 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS06525 8df33e6cf12307445e13399d20fcf120 530 Pfam PF00005 ABC transporter 337 467 7.2E-23 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS06525 8df33e6cf12307445e13399d20fcf120 530 SUPERFAMILY SSF52540 125 242 1.18E-45 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS06525 8df33e6cf12307445e13399d20fcf120 530 SUPERFAMILY SSF52540 2 92 1.18E-45 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS06525 8df33e6cf12307445e13399d20fcf120 530 Pfam PF12848 ABC transporter 224 309 7.2E-21 T 29-03-2018 IPR032781 ABC-transporter extension domain AM354_RS06525 8df33e6cf12307445e13399d20fcf120 530 Gene3D G3DSA:3.40.50.300 2 282 8.9E-52 T 29-03-2018 AM354_RS06525 8df33e6cf12307445e13399d20fcf120 530 Gene3D G3DSA:3.40.50.300 283 529 4.2E-49 T 29-03-2018 AM354_RS06525 8df33e6cf12307445e13399d20fcf120 530 SMART SM00382 26 228 1.1E-9 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS06525 8df33e6cf12307445e13399d20fcf120 530 SMART SM00382 344 521 5.9E-10 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS03835 d6618733180d6ea48ad3de7ae73c7fca 403 Gene3D G3DSA:1.20.1250.20 15 203 4.1E-22 T 29-03-2018 AM354_RS03835 d6618733180d6ea48ad3de7ae73c7fca 403 Pfam PF07690 Major Facilitator Superfamily 26 333 4.8E-31 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS03835 d6618733180d6ea48ad3de7ae73c7fca 403 Gene3D G3DSA:1.20.1250.20 212 402 1.4E-16 T 29-03-2018 AM354_RS03835 d6618733180d6ea48ad3de7ae73c7fca 403 SUPERFAMILY SSF103473 6 399 5.1E-49 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS10920 44a947d224d38547d6a511d698d8db73 429 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 97 111 - T 29-03-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 AM354_RS10920 44a947d224d38547d6a511d698d8db73 429 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 93 368 1.5E-25 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM354_RS10920 44a947d224d38547d6a511d698d8db73 429 Pfam PF14821 Threonine synthase N terminus 8 80 2.1E-11 T 29-03-2018 IPR029144 Threonine synthase, N-terminal AM354_RS10920 44a947d224d38547d6a511d698d8db73 429 SUPERFAMILY SSF53686 1 426 5.11E-132 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM354_RS10920 44a947d224d38547d6a511d698d8db73 429 Gene3D G3DSA:3.40.50.1100 198 320 9.2E-42 T 29-03-2018 AM354_RS10920 44a947d224d38547d6a511d698d8db73 429 Gene3D G3DSA:3.40.50.1100 321 395 3.3E-13 T 29-03-2018 AM354_RS10920 44a947d224d38547d6a511d698d8db73 429 Gene3D G3DSA:3.40.50.1100 101 197 1.6E-19 T 29-03-2018 AM354_RS10920 44a947d224d38547d6a511d698d8db73 429 Gene3D G3DSA:3.90.1380.10 1 81 4.8E-16 T 29-03-2018 IPR029144 Threonine synthase, N-terminal AM354_RS10920 44a947d224d38547d6a511d698d8db73 429 TIGRFAM TIGR00260 thrC: threonine synthase 52 397 2.5E-125 T 29-03-2018 IPR004450 Threonine synthase-like AM354_RS23375 ae7169fb14b58bde4f98194f71050c2c 225 SUPERFAMILY SSF47413 28 83 1.69E-5 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS23375 ae7169fb14b58bde4f98194f71050c2c 225 Gene3D G3DSA:1.10.260.40 1 97 4.9E-7 T 29-03-2018 AM354_RS23375 ae7169fb14b58bde4f98194f71050c2c 225 SUPERFAMILY SSF51306 117 223 7.15E-10 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AM354_RS23375 ae7169fb14b58bde4f98194f71050c2c 225 Gene3D G3DSA:2.10.109.10 104 224 8.8E-8 T 29-03-2018 AM354_RS23375 ae7169fb14b58bde4f98194f71050c2c 225 Pfam PF00717 Peptidase S24-like 145 199 4.2E-5 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AM354_RS11850 1a93abda7b60d8220bb6e05561afdc80 378 SUPERFAMILY SSF51338 2 50 1.86E-9 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM354_RS11850 1a93abda7b60d8220bb6e05561afdc80 378 SUPERFAMILY SSF51338 345 377 1.86E-9 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM354_RS11850 1a93abda7b60d8220bb6e05561afdc80 378 Gene3D G3DSA:2.30.40.10 1 48 1.3E-4 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM354_RS11850 1a93abda7b60d8220bb6e05561afdc80 378 Pfam PF07969 Amidohydrolase family 214 378 7.6E-10 T 29-03-2018 IPR013108 Amidohydrolase 3 AM354_RS11850 1a93abda7b60d8220bb6e05561afdc80 378 Gene3D G3DSA:3.20.20.140 49 376 1.8E-26 T 29-03-2018 AM354_RS11850 1a93abda7b60d8220bb6e05561afdc80 378 SUPERFAMILY SSF51556 50 345 3.69E-24 T 29-03-2018 IPR032466 Metal-dependent hydrolase AM354_RS11850 1a93abda7b60d8220bb6e05561afdc80 378 TIGRFAM TIGR02318 phosphono_phnM: phosphonate metabolism protein PhnM 3 378 3.5E-154 T 29-03-2018 IPR012696 Phosphonate metabolism PhnM GO:0019700 KEGG: 00440+3.6.1.63|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AM354_RS11850 1a93abda7b60d8220bb6e05561afdc80 378 PIRSF PIRSF038971 1 378 9.0E-161 T 29-03-2018 IPR012696 Phosphonate metabolism PhnM GO:0019700 KEGG: 00440+3.6.1.63|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AM354_RS00755 b6e1c0beb08fcb6702cbf80a054855f2 83 Gene3D G3DSA:1.10.1220.10 2 77 5.5E-25 T 29-03-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AM354_RS00755 b6e1c0beb08fcb6702cbf80a054855f2 83 Pfam PF03869 Arc-like DNA binding domain 3 51 2.6E-18 T 29-03-2018 IPR005569 Arc-like DNA binding domain GO:0003677 AM354_RS00755 b6e1c0beb08fcb6702cbf80a054855f2 83 SUPERFAMILY SSF58059 53 82 1.44E-6 T 29-03-2018 AM354_RS00755 b6e1c0beb08fcb6702cbf80a054855f2 83 SUPERFAMILY SSF47598 3 62 5.4E-17 T 29-03-2018 IPR010985 Ribbon-helix-helix GO:0006355 AM354_RS00755 b6e1c0beb08fcb6702cbf80a054855f2 83 Pfam PF11423 Regulatory protein Mnt 53 79 8.3E-9 T 29-03-2018 IPR024421 Bacteriophage P22, Mnt AM354_RS15620 003a9c566135975e736e2c8d546d4515 101 Gene3D G3DSA:1.10.1660.10 1 101 1.6E-9 T 29-03-2018 AM354_RS15620 003a9c566135975e736e2c8d546d4515 101 Pfam PF13591 MerR HTH family regulatory protein 8 92 1.8E-24 T 29-03-2018 AM354_RS03030 165d5f3b3c1d467ea8663e455667ed48 143 SUPERFAMILY SSF46785 4 140 3.02E-32 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS03030 165d5f3b3c1d467ea8663e455667ed48 143 SMART SM00347 22 123 3.3E-27 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM354_RS03030 165d5f3b3c1d467ea8663e455667ed48 143 Hamap MF_01819 Transcriptional regulator SlyA [slyA]. 1 143 38.159 T 29-03-2018 IPR023071 Transcriptional regulator, SlyA AM354_RS03030 165d5f3b3c1d467ea8663e455667ed48 143 ProSitePatterns PS01117 MarR-type HTH domain signature. 62 96 - T 29-03-2018 IPR023187 Transcriptional regulator MarR-type, conserved site AM354_RS03030 165d5f3b3c1d467ea8663e455667ed48 143 Pfam PF01047 MarR family 29 87 5.2E-17 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM354_RS03030 165d5f3b3c1d467ea8663e455667ed48 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 47 63 5.0E-26 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM354_RS03030 165d5f3b3c1d467ea8663e455667ed48 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 64 79 5.0E-26 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM354_RS03030 165d5f3b3c1d467ea8663e455667ed48 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 83 99 5.0E-26 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM354_RS03030 165d5f3b3c1d467ea8663e455667ed48 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 113 133 5.0E-26 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM354_RS03030 165d5f3b3c1d467ea8663e455667ed48 143 Gene3D G3DSA:1.10.10.10 1 143 1.5E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS07590 4d94e76cd0f0c9baebc3916c776e22af 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 38 48 2.9E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS07590 4d94e76cd0f0c9baebc3916c776e22af 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 27 38 2.9E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS07590 4d94e76cd0f0c9baebc3916c776e22af 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 48 59 2.9E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS07590 4d94e76cd0f0c9baebc3916c776e22af 298 SUPERFAMILY SSF53850 98 296 3.98E-31 T 29-03-2018 AM354_RS07590 4d94e76cd0f0c9baebc3916c776e22af 298 Gene3D G3DSA:3.40.190.10 179 262 1.5E-14 T 29-03-2018 AM354_RS07590 4d94e76cd0f0c9baebc3916c776e22af 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 14 70 4.6E-17 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS07590 4d94e76cd0f0c9baebc3916c776e22af 298 SUPERFAMILY SSF46785 10 118 3.81E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS07590 4d94e76cd0f0c9baebc3916c776e22af 298 Gene3D G3DSA:1.10.10.10 8 92 4.8E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS07590 4d94e76cd0f0c9baebc3916c776e22af 298 Gene3D G3DSA:3.40.190.10 98 178 1.8E-12 T 29-03-2018 AM354_RS07590 4d94e76cd0f0c9baebc3916c776e22af 298 Pfam PF03466 LysR substrate binding domain 94 293 2.4E-28 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS05230 1041c7846561d210c4ea07009a815be1 390 Gene3D G3DSA:1.20.1250.20 8 198 3.0E-25 T 29-03-2018 AM354_RS05230 1041c7846561d210c4ea07009a815be1 390 PRINTS PR01035 Tetracycline resistance protein signature 141 163 3.0E-5 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AM354_RS05230 1041c7846561d210c4ea07009a815be1 390 PRINTS PR01035 Tetracycline resistance protein signature 272 293 3.0E-5 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AM354_RS05230 1041c7846561d210c4ea07009a815be1 390 PRINTS PR01035 Tetracycline resistance protein signature 48 67 3.0E-5 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AM354_RS05230 1041c7846561d210c4ea07009a815be1 390 Gene3D G3DSA:1.20.1250.20 199 390 1.7E-17 T 29-03-2018 AM354_RS05230 1041c7846561d210c4ea07009a815be1 390 Pfam PF07690 Major Facilitator Superfamily 17 319 1.5E-37 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS05230 1041c7846561d210c4ea07009a815be1 390 SUPERFAMILY SSF103473 9 384 7.98E-55 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS18665 2b509b4e39799a433ab313b7cf8cf1a0 1002 Pfam PF01526 Tn3 transposase DDE domain 587 976 2.5E-149 T 29-03-2018 IPR002513 Tn3 transposase DDE domain GO:0004803|GO:0006313 AM354_RS18665 2b509b4e39799a433ab313b7cf8cf1a0 1002 Pfam PF13700 Domain of unknown function (DUF4158) 5 172 7.9E-49 T 29-03-2018 IPR025296 Domain of unknown function DUF4158 AM354_RS05495 617935699fdf50fe9408914380a42c92 634 SUPERFAMILY SSF52540 126 245 7.71E-48 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS05495 617935699fdf50fe9408914380a42c92 634 SUPERFAMILY SSF52540 4 94 7.71E-48 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS05495 617935699fdf50fe9408914380a42c92 634 Gene3D G3DSA:1.20.58.410 563 633 2.3E-4 T 29-03-2018 AM354_RS05495 617935699fdf50fe9408914380a42c92 634 Pfam PF00005 ABC transporter 19 185 9.4E-21 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS05495 617935699fdf50fe9408914380a42c92 634 Pfam PF00005 ABC transporter 336 469 3.7E-24 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS05495 617935699fdf50fe9408914380a42c92 634 SMART SM00382 28 230 7.1E-14 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS05495 617935699fdf50fe9408914380a42c92 634 SMART SM00382 344 514 3.5E-12 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS05495 617935699fdf50fe9408914380a42c92 634 Gene3D G3DSA:3.40.50.300 1 285 3.9E-52 T 29-03-2018 AM354_RS05495 617935699fdf50fe9408914380a42c92 634 ProSitePatterns PS00211 ABC transporters family signature. 441 455 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS05495 617935699fdf50fe9408914380a42c92 634 SUPERFAMILY SSF52540 311 501 6.74E-46 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS05495 617935699fdf50fe9408914380a42c92 634 Gene3D G3DSA:3.40.50.300 286 559 1.6E-54 T 29-03-2018 AM354_RS05495 617935699fdf50fe9408914380a42c92 634 Pfam PF16326 ABC transporter C-terminal domain 561 629 6.9E-21 T 29-03-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 AM354_RS05495 617935699fdf50fe9408914380a42c92 634 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS05495 617935699fdf50fe9408914380a42c92 634 Pfam PF12848 ABC transporter 224 299 4.5E-10 T 29-03-2018 IPR032781 ABC-transporter extension domain AM354_RS02370 1f0300f05dc78cd0e5da3c51dfdd1f6e 405 SUPERFAMILY SSF103473 6 381 2.62E-52 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS02370 1f0300f05dc78cd0e5da3c51dfdd1f6e 405 Gene3D G3DSA:1.20.1250.20 193 381 4.4E-15 T 29-03-2018 AM354_RS02370 1f0300f05dc78cd0e5da3c51dfdd1f6e 405 Pfam PF07690 Major Facilitator Superfamily 10 222 7.3E-25 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS02370 1f0300f05dc78cd0e5da3c51dfdd1f6e 405 Gene3D G3DSA:1.20.1250.20 4 192 4.1E-28 T 29-03-2018 AM354_RS16920 74f162b799941a7092ff396862bf3458 179 TIGRFAM TIGR03002 outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA 27 166 3.5E-50 T 29-03-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 AM354_RS16920 74f162b799941a7092ff396862bf3458 179 Gene3D G3DSA:2.60.450.10 27 164 1.6E-26 T 29-03-2018 AM354_RS16920 74f162b799941a7092ff396862bf3458 179 Pfam PF03968 OstA-like protein 38 148 7.6E-30 T 29-03-2018 IPR005653 Organic solvent tolerance-like, N-terminal AM354_RS16920 74f162b799941a7092ff396862bf3458 179 Hamap MF_01914 Lipopolysaccharide export system protein LptA [lptA]. 7 167 25.733 T 29-03-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 AM354_RS12750 e93a15e2131d5232ad572574b6c21f6d 165 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 162 26.782 T 29-03-2018 IPR022973 Ribosomal protein L10 AM354_RS12750 e93a15e2131d5232ad572574b6c21f6d 165 SUPERFAMILY SSF160369 4 161 6.93E-49 T 29-03-2018 AM354_RS12750 e93a15e2131d5232ad572574b6c21f6d 165 ProSitePatterns PS01109 Ribosomal protein L10 signature. 8 42 - T 29-03-2018 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS12750 e93a15e2131d5232ad572574b6c21f6d 165 Pfam PF00466 Ribosomal protein L10 5 101 1.4E-26 T 29-03-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 AM354_RS12750 e93a15e2131d5232ad572574b6c21f6d 165 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 78 155 5.0E-4 T 29-03-2018 AM354_RS12750 e93a15e2131d5232ad572574b6c21f6d 165 Gene3D G3DSA:3.40.50.720 1 106 9.1E-4 T 29-03-2018 AM354_RS09240 32c767adba8fdadc2485034a08b50cdb 374 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 3 367 1.2E-178 T 29-03-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AM354_RS09240 32c767adba8fdadc2485034a08b50cdb 374 SUPERFAMILY SSF51713 2 364 1.16E-165 T 29-03-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AM354_RS09240 32c767adba8fdadc2485034a08b50cdb 374 Pfam PF01702 Queuine tRNA-ribosyltransferase 126 361 2.3E-95 T 29-03-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AM354_RS09240 32c767adba8fdadc2485034a08b50cdb 374 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 3 367 2.3E-189 T 29-03-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AM354_RS09240 32c767adba8fdadc2485034a08b50cdb 374 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 1 364 57.973 T 29-03-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AM354_RS09240 32c767adba8fdadc2485034a08b50cdb 374 Gene3D G3DSA:3.20.20.105 1 367 4.2E-160 T 29-03-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AM354_RS12290 bf9200e58f079cf0158ba3d8d213819b 824 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 67 726 8.7E-273 T 29-03-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 AM354_RS12290 bf9200e58f079cf0158ba3d8d213819b 824 Pfam PF08206 Ribonuclease B OB domain 87 144 3.3E-21 T 29-03-2018 IPR013223 Ribonuclease B, N-terminal OB domain AM354_RS12290 bf9200e58f079cf0158ba3d8d213819b 824 Gene3D G3DSA:1.10.10.10 18 79 1.9E-6 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS12290 bf9200e58f079cf0158ba3d8d213819b 824 Pfam PF08461 Ribonuclease R winged-helix domain 22 85 3.6E-15 T 29-03-2018 IPR013668 Ribonuclease R winged-helix domain AM354_RS12290 bf9200e58f079cf0158ba3d8d213819b 824 Pfam PF00575 S1 RNA binding domain 643 724 4.7E-16 T 29-03-2018 IPR003029 S1 domain GO:0003676 AM354_RS12290 bf9200e58f079cf0158ba3d8d213819b 824 SUPERFAMILY SSF50249 67 145 2.46E-17 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS12290 bf9200e58f079cf0158ba3d8d213819b 824 SMART SM00316 643 726 2.2E-12 T 29-03-2018 IPR022967 RNA-binding domain, S1 AM354_RS12290 bf9200e58f079cf0158ba3d8d213819b 824 SMART SM00316 80 142 38.0 T 29-03-2018 IPR022967 RNA-binding domain, S1 AM354_RS12290 bf9200e58f079cf0158ba3d8d213819b 824 SMART SM00357 86 145 6.2E-15 T 29-03-2018 IPR011129 Cold shock domain GO:0003676 AM354_RS12290 bf9200e58f079cf0158ba3d8d213819b 824 Pfam PF00773 RNB domain 260 587 3.9E-105 T 29-03-2018 AM354_RS12290 bf9200e58f079cf0158ba3d8d213819b 824 Hamap MF_01895 Ribonuclease R [rnr]. 38 726 57.142 T 29-03-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 AM354_RS12290 bf9200e58f079cf0158ba3d8d213819b 824 SUPERFAMILY SSF50249 644 739 2.6E-21 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS12290 bf9200e58f079cf0158ba3d8d213819b 824 SUPERFAMILY SSF50249 138 236 5.71E-15 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS12290 bf9200e58f079cf0158ba3d8d213819b 824 TIGRFAM TIGR02063 RNase_R: ribonuclease R 19 726 1.9E-277 T 29-03-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 AM354_RS12290 bf9200e58f079cf0158ba3d8d213819b 824 SUPERFAMILY SSF50249 222 643 4.68E-139 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS12290 bf9200e58f079cf0158ba3d8d213819b 824 SMART SM00955 260 588 1.5E-177 T 29-03-2018 AM354_RS12290 bf9200e58f079cf0158ba3d8d213819b 824 Gene3D G3DSA:2.40.50.140 642 727 1.7E-19 T 29-03-2018 AM354_RS11065 d87a63cc5920078f63183500f73492ac 259 SMART SM01133 10 246 8.9E-82 T 29-03-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AM354_RS11065 d87a63cc5920078f63183500f73492ac 259 Pfam PF01791 DeoC/LacD family aldolase 12 244 7.0E-47 T 29-03-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AM354_RS11065 d87a63cc5920078f63183500f73492ac 259 PIRSF PIRSF001357 5 255 8.9E-79 T 29-03-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AM354_RS11065 d87a63cc5920078f63183500f73492ac 259 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 11 232 1.7E-79 T 29-03-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AM354_RS11065 d87a63cc5920078f63183500f73492ac 259 SUPERFAMILY SSF51569 6 245 1.67E-81 T 29-03-2018 AM354_RS11065 d87a63cc5920078f63183500f73492ac 259 Gene3D G3DSA:3.20.20.70 1 257 1.4E-81 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS11065 d87a63cc5920078f63183500f73492ac 259 Hamap MF_00592 Deoxyribose-phosphate aldolase [deoC]. 1 259 53.33 T 29-03-2018 IPR023649 Deoxyribose-phosphate aldolase type II GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180 AM354_RS08305 95eba66f5cd52274049bc8227802c3b0 246 Gene3D G3DSA:1.10.3720.10 17 239 6.4E-39 T 29-03-2018 AM354_RS08305 95eba66f5cd52274049bc8227802c3b0 246 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 46 237 1.8E-24 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS08305 95eba66f5cd52274049bc8227802c3b0 246 SUPERFAMILY SSF161098 24 223 8.76E-37 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS08305 95eba66f5cd52274049bc8227802c3b0 246 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 24 132 2.2E-15 T 29-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 AM354_RS18315 abe67914597eee76ec0b336197022ca8 211 SUPERFAMILY SSF53955 34 74 1.0E-15 T 29-03-2018 IPR023346 Lysozyme-like domain AM354_RS18315 abe67914597eee76ec0b336197022ca8 211 SUPERFAMILY SSF53955 102 177 1.0E-15 T 29-03-2018 IPR023346 Lysozyme-like domain AM354_RS18315 abe67914597eee76ec0b336197022ca8 211 Gene3D G3DSA:1.10.530.10 24 177 2.8E-14 T 29-03-2018 AM354_RS18315 abe67914597eee76ec0b336197022ca8 211 Pfam PF01464 Transglycosylase SLT domain 42 157 1.2E-4 T 29-03-2018 IPR008258 Transglycosylase SLT domain 1 AM354_RS05920 bf82475532eb1941fcd13ebf08a8123c 320 Gene3D G3DSA:1.10.3720.10 33 314 5.4E-40 T 29-03-2018 AM354_RS05920 bf82475532eb1941fcd13ebf08a8123c 320 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 120 316 4.1E-23 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS05920 bf82475532eb1941fcd13ebf08a8123c 320 SUPERFAMILY SSF161098 32 311 2.24E-55 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS23320 eb6c53f032063adb264cae5f55d31e31 216 SUPERFAMILY SSF52172 3 135 4.13E-21 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS23320 eb6c53f032063adb264cae5f55d31e31 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 165 4.0E-8 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS23320 eb6c53f032063adb264cae5f55d31e31 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 181 4.0E-8 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS23320 eb6c53f032063adb264cae5f55d31e31 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 193 4.0E-8 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS23320 eb6c53f032063adb264cae5f55d31e31 216 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 204 1.1E-18 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS23320 eb6c53f032063adb264cae5f55d31e31 216 Gene3D G3DSA:1.10.10.10 132 215 3.8E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS23320 eb6c53f032063adb264cae5f55d31e31 216 Pfam PF00072 Response regulator receiver domain 6 120 6.1E-25 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS23320 eb6c53f032063adb264cae5f55d31e31 216 Hamap MF_00981 Transcriptional regulatory protein RcsB [rcsB]. 1 214 51.851 T 29-03-2018 IPR030864 Transcriptional regulatory protein RcsB GO:0000160|GO:0006355 AM354_RS23320 eb6c53f032063adb264cae5f55d31e31 216 SMART SM00421 148 205 4.2E-16 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS23320 eb6c53f032063adb264cae5f55d31e31 216 Gene3D G3DSA:3.40.50.2300 3 131 1.6E-21 T 29-03-2018 AM354_RS23320 eb6c53f032063adb264cae5f55d31e31 216 SMART SM00448 4 120 3.0E-14 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS23320 eb6c53f032063adb264cae5f55d31e31 216 SUPERFAMILY SSF46894 146 208 2.01E-16 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS23320 eb6c53f032063adb264cae5f55d31e31 216 ProSitePatterns PS00622 LuxR-type HTH domain signature. 165 192 - T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS23910 ae387da84ec080380881757e1690656c 390 Pfam PF00155 Aminotransferase class I and II 49 384 2.5E-54 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM354_RS23910 ae387da84ec080380881757e1690656c 390 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 241 250 - T 29-03-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 AM354_RS23910 ae387da84ec080380881757e1690656c 390 Gene3D G3DSA:3.40.640.10 61 277 2.2E-41 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS23910 ae387da84ec080380881757e1690656c 390 SUPERFAMILY SSF53383 7 387 6.45E-99 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS23910 ae387da84ec080380881757e1690656c 390 Gene3D G3DSA:3.90.1150.10 278 390 8.2E-26 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS12235 4d776f2becc435db4210658806b3f9df 75 SUPERFAMILY SSF46911 3 74 7.06E-29 T 29-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS12235 4d776f2becc435db4210658806b3f9df 75 TIGRFAM TIGR00165 S18: ribosomal protein bS18 4 72 8.1E-38 T 29-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS12235 4d776f2becc435db4210658806b3f9df 75 ProSitePatterns PS00057 Ribosomal protein S18 signature. 21 44 - T 29-03-2018 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS12235 4d776f2becc435db4210658806b3f9df 75 PRINTS PR00974 Ribosomal protein S18 family signature 38 45 1.3E-18 T 29-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS12235 4d776f2becc435db4210658806b3f9df 75 PRINTS PR00974 Ribosomal protein S18 family signature 46 60 1.3E-18 T 29-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS12235 4d776f2becc435db4210658806b3f9df 75 PRINTS PR00974 Ribosomal protein S18 family signature 28 38 1.3E-18 T 29-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS12235 4d776f2becc435db4210658806b3f9df 75 PRINTS PR00974 Ribosomal protein S18 family signature 60 70 1.3E-18 T 29-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS12235 4d776f2becc435db4210658806b3f9df 75 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 21 71 3.0E-22 T 29-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS12235 4d776f2becc435db4210658806b3f9df 75 Pfam PF01084 Ribosomal protein S18 19 68 9.1E-25 T 29-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS12235 4d776f2becc435db4210658806b3f9df 75 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 2 73 21.313 T 29-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS12235 4d776f2becc435db4210658806b3f9df 75 Gene3D G3DSA:4.10.640.10 1 75 1.5E-31 T 29-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS21755 1523afbdc9ece2cff65574da9f97bfad 120 Pfam PF03829 PTS system glucitol/sorbitol-specific IIA component 4 115 8.6E-38 T 29-03-2018 IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component GO:0005737|GO:0008982|GO:0009401 KEGG: 00051+2.7.1.198|KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 AM354_RS21755 1523afbdc9ece2cff65574da9f97bfad 120 ProDom PD015842 PTS IIA COMPONENT GLUCITOL/SORBITOL-SPECIFIC SYSTEM ENZYME TRANSFERASE SYSTEM PHOSPHOTRANSFERASE EIIA 6 118 4.0E-37 T 29-03-2018 IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component GO:0005737|GO:0008982|GO:0009401 KEGG: 00051+2.7.1.198|KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 AM354_RS21755 1523afbdc9ece2cff65574da9f97bfad 120 Gene3D G3DSA:2.40.33.40 3 118 6.1E-39 T 29-03-2018 IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component GO:0005737|GO:0008982|GO:0009401 KEGG: 00051+2.7.1.198|KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 AM354_RS21755 1523afbdc9ece2cff65574da9f97bfad 120 SUPERFAMILY SSF141530 4 119 7.72E-37 T 29-03-2018 IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component GO:0005737|GO:0008982|GO:0009401 KEGG: 00051+2.7.1.198|KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 AM354_RS07295 3083dfa1d9fd1a4a08a9b2a65bc1689a 282 Pfam PF01163 RIO1 family 31 219 8.6E-40 T 29-03-2018 AM354_RS07295 3083dfa1d9fd1a4a08a9b2a65bc1689a 282 SMART SM00090 5 234 8.1E-10 T 29-03-2018 IPR000687 RIO kinase GO:0004674|GO:0005524 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|Reactome: R-HSA-6791226 AM354_RS07295 3083dfa1d9fd1a4a08a9b2a65bc1689a 282 SUPERFAMILY SSF56112 19 212 5.25E-17 T 29-03-2018 IPR011009 Protein kinase-like domain AM354_RS07295 3083dfa1d9fd1a4a08a9b2a65bc1689a 282 Gene3D G3DSA:1.10.510.10 140 230 6.3E-6 T 29-03-2018 AM354_RS07295 3083dfa1d9fd1a4a08a9b2a65bc1689a 282 Gene3D G3DSA:1.10.150.240 231 279 7.1E-4 T 29-03-2018 IPR023198 Phosphoglycolate phosphatase, domain 2 AM354_RS07295 3083dfa1d9fd1a4a08a9b2a65bc1689a 282 Gene3D G3DSA:3.30.200.20 16 125 5.9E-21 T 29-03-2018 AM354_RS07295 3083dfa1d9fd1a4a08a9b2a65bc1689a 282 ProSitePatterns PS01245 RIO1/ZK632.3/MJ0444 family signature. 164 175 - T 29-03-2018 IPR018935 RIO kinase, conserved site GO:0004674|GO:0005524 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|Reactome: R-HSA-6791226 AM354_RS21155 f4120faa4aaf019bb84b2ac726961278 342 Pfam PF00005 ABC transporter 21 162 8.7E-33 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS21155 f4120faa4aaf019bb84b2ac726961278 342 Gene3D G3DSA:2.40.50.140 259 323 2.2E-5 T 29-03-2018 AM354_RS21155 f4120faa4aaf019bb84b2ac726961278 342 SMART SM00382 29 212 2.9E-18 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS21155 f4120faa4aaf019bb84b2ac726961278 342 Gene3D G3DSA:3.40.50.300 2 252 3.5E-72 T 29-03-2018 AM354_RS21155 f4120faa4aaf019bb84b2ac726961278 342 SUPERFAMILY SSF52540 5 243 2.6E-84 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS21155 f4120faa4aaf019bb84b2ac726961278 342 SUPERFAMILY SSF50331 249 334 4.02E-9 T 29-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal AM354_RS21155 f4120faa4aaf019bb84b2ac726961278 342 Pfam PF08402 TOBE domain 257 336 1.4E-14 T 29-03-2018 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 AM354_RS21155 f4120faa4aaf019bb84b2ac726961278 342 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS17365 74195749c890d3398264f27aa5c3f984 476 Gene3D G3DSA:3.50.30.10 394 475 1.2E-18 T 29-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AM354_RS17365 74195749c890d3398264f27aa5c3f984 476 Pfam PF00381 PTS HPr component phosphorylation site 154 233 1.6E-20 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like AM354_RS17365 74195749c890d3398264f27aa5c3f984 476 Gene3D G3DSA:3.30.1340.10 153 238 9.6E-23 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like AM354_RS17365 74195749c890d3398264f27aa5c3f984 476 TIGRFAM TIGR02364 dha_pts: dihydroxyacetone kinase, phosphotransfer subunit 2 126 8.4E-38 T 29-03-2018 IPR012844 Dihydroxyacetone kinase phosphotransferase subunit, N-terminal domain AM354_RS17365 74195749c890d3398264f27aa5c3f984 476 PRINTS PR00107 Phosphocarrier protein signature 189 204 3.2E-8 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like AM354_RS17365 74195749c890d3398264f27aa5c3f984 476 PRINTS PR00107 Phosphocarrier protein signature 164 180 3.2E-8 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like AM354_RS17365 74195749c890d3398264f27aa5c3f984 476 PRINTS PR00107 Phosphocarrier protein signature 204 221 3.2E-8 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like AM354_RS17365 74195749c890d3398264f27aa5c3f984 476 Gene3D G3DSA:3.40.50.510 1 146 3.9E-35 T 29-03-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 AM354_RS17365 74195749c890d3398264f27aa5c3f984 476 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 164 171 - T 29-03-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site AM354_RS17365 74195749c890d3398264f27aa5c3f984 476 Pfam PF03610 PTS system fructose IIA component 4 120 1.1E-25 T 29-03-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 AM354_RS17365 74195749c890d3398264f27aa5c3f984 476 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 154 231 3.1E-17 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like AM354_RS17365 74195749c890d3398264f27aa5c3f984 476 SUPERFAMILY SSF52009 361 474 2.49E-24 T 29-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AM354_RS17365 74195749c890d3398264f27aa5c3f984 476 SUPERFAMILY SSF47831 275 389 9.94E-30 T 29-03-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AM354_RS17365 74195749c890d3398264f27aa5c3f984 476 Pfam PF00391 PEP-utilising enzyme, mobile domain 398 470 5.0E-16 T 29-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AM354_RS17365 74195749c890d3398264f27aa5c3f984 476 SUPERFAMILY SSF55594 154 238 1.96E-21 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like AM354_RS17365 74195749c890d3398264f27aa5c3f984 476 SUPERFAMILY SSF53062 1 129 1.16E-32 T 29-03-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 AM354_RS17365 74195749c890d3398264f27aa5c3f984 476 Pfam PF05524 PEP-utilising enzyme, N-terminal 249 372 3.2E-28 T 29-03-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AM354_RS17365 74195749c890d3398264f27aa5c3f984 476 Gene3D G3DSA:1.10.274.10 271 390 1.3E-30 T 29-03-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AM354_RS15965 b0ac28e00d5803faa1eb11c9ec5aa84a 95 Gene3D G3DSA:3.40.1260.10 1 93 4.7E-23 T 29-03-2018 AM354_RS15965 b0ac28e00d5803faa1eb11c9ec5aa84a 95 TIGRFAM TIGR03011 sulf_tusB_dsrH: sulfur relay protein TusB/DsrH 2 95 8.9E-30 T 29-03-2018 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 AM354_RS15965 b0ac28e00d5803faa1eb11c9ec5aa84a 95 Hamap MF_01564 Protein TusB [tusB]. 1 95 27.78 T 29-03-2018 IPR023526 Sulphur relay, TusB GO:0002143|GO:0005737 AM354_RS15965 b0ac28e00d5803faa1eb11c9ec5aa84a 95 Pfam PF04077 DsrH like protein 7 91 1.6E-27 T 29-03-2018 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 AM354_RS15965 b0ac28e00d5803faa1eb11c9ec5aa84a 95 SUPERFAMILY SSF75169 1 95 6.77E-29 T 29-03-2018 IPR027396 DsrEFH-like AM354_RS14865 bee5b5557d2e1c46ba7d5a016c14dc64 1007 Gene3D G3DSA:2.40.128.130 683 1007 4.3E-62 T 29-03-2018 AM354_RS14865 bee5b5557d2e1c46ba7d5a016c14dc64 1007 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 530 1007 3.5E-93 T 29-03-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 AM354_RS14865 bee5b5557d2e1c46ba7d5a016c14dc64 1007 PRINTS PR00723 Subtilisin serine protease family (S8) signature 54 73 1.7E-13 T 29-03-2018 IPR015500 Peptidase S8, subtilisin-related AM354_RS14865 bee5b5557d2e1c46ba7d5a016c14dc64 1007 PRINTS PR00723 Subtilisin serine protease family (S8) signature 335 351 1.7E-13 T 29-03-2018 IPR015500 Peptidase S8, subtilisin-related AM354_RS14865 bee5b5557d2e1c46ba7d5a016c14dc64 1007 PRINTS PR00723 Subtilisin serine protease family (S8) signature 116 129 1.7E-13 T 29-03-2018 IPR015500 Peptidase S8, subtilisin-related AM354_RS14865 bee5b5557d2e1c46ba7d5a016c14dc64 1007 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 465 496 2.4E-12 T 29-03-2018 IPR013425 Autotransporter-associated beta strand repeat AM354_RS14865 bee5b5557d2e1c46ba7d5a016c14dc64 1007 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 336 346 - T 29-03-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site AM354_RS14865 bee5b5557d2e1c46ba7d5a016c14dc64 1007 Pfam PF12951 Passenger-associated-transport-repeat 466 495 5.8E-11 T 29-03-2018 IPR013425 Autotransporter-associated beta strand repeat AM354_RS14865 bee5b5557d2e1c46ba7d5a016c14dc64 1007 Gene3D G3DSA:3.40.50.200 5 398 2.3E-67 T 29-03-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AM354_RS14865 bee5b5557d2e1c46ba7d5a016c14dc64 1007 SMART SM00869 734 997 1.4E-52 T 29-03-2018 IPR005546 Autotransporter beta-domain AM354_RS14865 bee5b5557d2e1c46ba7d5a016c14dc64 1007 SUPERFAMILY SSF52743 225 396 4.19E-63 T 29-03-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AM354_RS14865 bee5b5557d2e1c46ba7d5a016c14dc64 1007 SUPERFAMILY SSF52743 36 189 4.19E-63 T 29-03-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AM354_RS14865 bee5b5557d2e1c46ba7d5a016c14dc64 1007 Pfam PF00082 Subtilase family 54 386 3.3E-45 T 29-03-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AM354_RS14865 bee5b5557d2e1c46ba7d5a016c14dc64 1007 SUPERFAMILY SSF103515 692 1007 1.96E-69 T 29-03-2018 IPR005546 Autotransporter beta-domain AM354_RS14865 bee5b5557d2e1c46ba7d5a016c14dc64 1007 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 120 130 - T 29-03-2018 IPR022398 Peptidase S8, subtilisin, His-active site AM354_RS14865 bee5b5557d2e1c46ba7d5a016c14dc64 1007 Pfam PF03797 Autotransporter beta-domain 737 987 3.3E-59 T 29-03-2018 IPR005546 Autotransporter beta-domain AM354_RS16995 c2a8b4661d2da19e1949613f46707601 375 SUPERFAMILY SSF52540 70 193 7.68E-13 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS16995 c2a8b4661d2da19e1949613f46707601 375 Pfam PF03969 AFG1-like ATPase 5 370 1.7E-149 T 29-03-2018 IPR005654 ATPase, AFG1-like GO:0005524 AM354_RS16995 c2a8b4661d2da19e1949613f46707601 375 Gene3D G3DSA:3.40.50.300 21 368 1.8E-13 T 29-03-2018 AM354_RS16995 c2a8b4661d2da19e1949613f46707601 375 Hamap MF_01919 Cell division protein ZapE [zapE]. 4 375 53.853 T 29-03-2018 IPR030870 Cell division protein ZapE GO:0016887|GO:0051301 AM354_RS15285 a689521426b768421e8548261fc70e9e 179 Pfam PF00419 Fimbrial protein 36 179 3.2E-13 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS15285 a689521426b768421e8548261fc70e9e 179 Gene3D G3DSA:2.60.40.1090 30 179 3.7E-29 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS15285 a689521426b768421e8548261fc70e9e 179 SUPERFAMILY SSF49401 31 179 7.95E-37 T 29-03-2018 IPR008966 Adhesion domain AM354_RS07945 1fd8cf1fa72d05c349fc46008a4e7d36 264 Pfam PF16331 TolA binding protein trimerisation 37 111 1.7E-23 T 29-03-2018 IPR032519 YbgF, trimerisation domain GO:0070206 AM354_RS07945 1fd8cf1fa72d05c349fc46008a4e7d36 264 Pfam PF13432 Tetratricopeptide repeat 152 216 7.1E-9 T 29-03-2018 AM354_RS07945 1fd8cf1fa72d05c349fc46008a4e7d36 264 Pfam PF13174 Tetratricopeptide repeat 220 252 3.7E-8 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AM354_RS07945 1fd8cf1fa72d05c349fc46008a4e7d36 264 Hamap MF_02066 Cell division coordinator CpoB [cpoB]. 6 264 19.155 T 29-03-2018 IPR034706 Cell division coordinator CpoB GO:0051301 AM354_RS07945 1fd8cf1fa72d05c349fc46008a4e7d36 264 Gene3D G3DSA:1.25.40.10 146 263 1.5E-18 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS07945 1fd8cf1fa72d05c349fc46008a4e7d36 264 Gene3D G3DSA:1.20.5.50 35 82 3.8E-5 T 29-03-2018 AM354_RS07945 1fd8cf1fa72d05c349fc46008a4e7d36 264 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 145 261 1.2E-43 T 29-03-2018 IPR014162 Cell division coordinator CpoB, C-terminal AM354_RS07945 1fd8cf1fa72d05c349fc46008a4e7d36 264 SUPERFAMILY SSF48452 154 259 2.44E-15 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS23060 617eb8c8ee5c0743e151dd281a65dd69 283 SUPERFAMILY SSF52518 7 274 4.59E-80 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS23060 617eb8c8ee5c0743e151dd281a65dd69 283 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 17 266 5.5E-48 T 29-03-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AM354_RS23060 617eb8c8ee5c0743e151dd281a65dd69 283 Gene3D G3DSA:3.40.50.970 1 280 3.0E-68 T 29-03-2018 AM354_RS05780 ca5b9aa568b5d10bccf551e7d1a6415d 106 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 14 101 28.159 T 29-03-2018 IPR022935 ATP-dependent Clp protease adaptor protein ClpS AM354_RS05780 ca5b9aa568b5d10bccf551e7d1a6415d 106 Gene3D G3DSA:3.30.1390.10 13 105 6.5E-37 T 29-03-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AM354_RS05780 ca5b9aa568b5d10bccf551e7d1a6415d 106 SUPERFAMILY SSF54736 22 105 5.02E-33 T 29-03-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AM354_RS05780 ca5b9aa568b5d10bccf551e7d1a6415d 106 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 23 102 2.9E-33 T 29-03-2018 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 AM354_RS03105 a68b467ce2c2941c71c0b4af79f519ac 115 Pfam PF00462 Glutaredoxin 17 81 1.1E-18 T 29-03-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 AM354_RS03105 a68b467ce2c2941c71c0b4af79f519ac 115 SUPERFAMILY SSF52833 2 102 3.13E-35 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS03105 a68b467ce2c2941c71c0b4af79f519ac 115 Gene3D G3DSA:3.40.30.10 3 115 2.3E-30 T 29-03-2018 AM354_RS03105 a68b467ce2c2941c71c0b4af79f519ac 115 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 5 101 3.3E-47 T 29-03-2018 IPR004480 Monothiol glutaredoxin-related AM354_RS03105 a68b467ce2c2941c71c0b4af79f519ac 115 PIRSF PIRSF005894 1 108 2.1E-52 T 29-03-2018 IPR014434 Monothiol glutaredoxin GO:0015036 Reactome: R-HSA-1362409 AM354_RS09165 84049ed202c536d06cb7801239d6ea62 482 Gene3D G3DSA:3.30.2300.10 82 162 5.1E-22 T 29-03-2018 AM354_RS09165 84049ed202c536d06cb7801239d6ea62 482 Gene3D G3DSA:3.40.50.620 175 390 1.4E-26 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS09165 84049ed202c536d06cb7801239d6ea62 482 Pfam PF02926 THUMP domain 29 162 2.2E-23 T 29-03-2018 IPR004114 THUMP domain GO:0003723 AM354_RS09165 84049ed202c536d06cb7801239d6ea62 482 Gene3D G3DSA:3.30.70.1510 2 81 2.3E-22 T 29-03-2018 AM354_RS09165 84049ed202c536d06cb7801239d6ea62 482 Gene3D G3DSA:3.40.250.10 391 482 3.9E-10 T 29-03-2018 IPR001763 Rhodanese-like domain AM354_RS09165 84049ed202c536d06cb7801239d6ea62 482 Pfam PF02568 Thiamine biosynthesis protein (ThiI) 175 369 2.4E-78 T 29-03-2018 IPR020536 Thil, AANH domain GO:0004810 AM354_RS09165 84049ed202c536d06cb7801239d6ea62 482 SUPERFAMILY SSF52402 174 372 8.38E-43 T 29-03-2018 AM354_RS09165 84049ed202c536d06cb7801239d6ea62 482 TIGRFAM TIGR04271 ThiI_C_thiazole: thiazole biosynthesis domain 383 482 9.6E-43 T 29-03-2018 IPR026340 Thiazole biosynthesis domain GO:0052837 AM354_RS09165 84049ed202c536d06cb7801239d6ea62 482 TIGRFAM TIGR00342 TIGR00342: tRNA sulfurtransferase ThiI 4 373 2.1E-135 T 29-03-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 AM354_RS09165 84049ed202c536d06cb7801239d6ea62 482 SMART SM00981 75 165 2.9E-22 T 29-03-2018 IPR004114 THUMP domain GO:0003723 AM354_RS09165 84049ed202c536d06cb7801239d6ea62 482 SUPERFAMILY SSF52821 405 481 1.01E-9 T 29-03-2018 IPR001763 Rhodanese-like domain AM354_RS09165 84049ed202c536d06cb7801239d6ea62 482 SUPERFAMILY SSF143437 1 173 9.24E-47 T 29-03-2018 AM354_RS09165 84049ed202c536d06cb7801239d6ea62 482 Hamap MF_00021 tRNA sulfurtransferase [thiI]. 1 482 230.267 T 29-03-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 AM354_RS19705 0ca295e1e3b4dccde4754eb68d22b8c7 285 Gene3D G3DSA:1.10.10.60 1 59 9.5E-13 T 29-03-2018 AM354_RS19705 0ca295e1e3b4dccde4754eb68d22b8c7 285 SUPERFAMILY SSF46689 59 115 9.86E-12 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS19705 0ca295e1e3b4dccde4754eb68d22b8c7 285 SUPERFAMILY SSF55136 130 285 1.83E-36 T 29-03-2018 AM354_RS19705 0ca295e1e3b4dccde4754eb68d22b8c7 285 Pfam PF12833 Helix-turn-helix domain 29 109 1.9E-22 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS19705 0ca295e1e3b4dccde4754eb68d22b8c7 285 Gene3D G3DSA:3.20.80.10 118 285 1.3E-31 T 29-03-2018 IPR011256 Regulatory factor, effector binding domain AM354_RS19705 0ca295e1e3b4dccde4754eb68d22b8c7 285 SMART SM00342 23 107 1.1E-23 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS19705 0ca295e1e3b4dccde4754eb68d22b8c7 285 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 76 91 9.7E-7 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM354_RS19705 0ca295e1e3b4dccde4754eb68d22b8c7 285 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 91 107 9.7E-7 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM354_RS19705 0ca295e1e3b4dccde4754eb68d22b8c7 285 SMART SM00871 130 285 2.0E-39 T 29-03-2018 IPR010499 Bacterial transcription activator, effector binding AM354_RS19705 0ca295e1e3b4dccde4754eb68d22b8c7 285 SUPERFAMILY SSF46689 7 57 8.96E-10 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS19705 0ca295e1e3b4dccde4754eb68d22b8c7 285 Gene3D G3DSA:1.10.10.60 60 117 8.3E-13 T 29-03-2018 AM354_RS19705 0ca295e1e3b4dccde4754eb68d22b8c7 285 Pfam PF06445 GyrI-like small molecule binding domain 130 285 4.2E-34 T 29-03-2018 IPR029442 GyrI-like small molecule binding domain AM354_RS19705 0ca295e1e3b4dccde4754eb68d22b8c7 285 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 60 103 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM354_RS06915 8c8ccf926eb89ff8d9a9e5427d7be716 529 Pfam PF06506 Propionate catabolism activator 35 193 8.0E-46 T 29-03-2018 IPR010524 Signal transduction response regulator, propionate catabolism activator, N-terminal GO:0000156|GO:0000160|GO:0003677|GO:0005524 AM354_RS06915 8c8ccf926eb89ff8d9a9e5427d7be716 529 TIGRFAM TIGR02329 propionate_PrpR: propionate catabolism operon regulatory protein PrpR 8 527 3.7E-226 T 29-03-2018 IPR012704 Signal transduction response regulator, propionate catabolism, transcriptional regulator PrpR GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0005737|GO:0019629 AM354_RS06915 8c8ccf926eb89ff8d9a9e5427d7be716 529 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 511 529 5.0E-7 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AM354_RS06915 8c8ccf926eb89ff8d9a9e5427d7be716 529 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 494 511 5.0E-7 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AM354_RS06915 8c8ccf926eb89ff8d9a9e5427d7be716 529 SUPERFAMILY SSF159800 10 192 1.01E-48 T 29-03-2018 AM354_RS06915 8c8ccf926eb89ff8d9a9e5427d7be716 529 Gene3D G3DSA:3.40.50.10660 96 175 1.3E-22 T 29-03-2018 AM354_RS06915 8c8ccf926eb89ff8d9a9e5427d7be716 529 Pfam PF00158 Sigma-54 interaction domain 220 394 1.1E-60 T 29-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AM354_RS06915 8c8ccf926eb89ff8d9a9e5427d7be716 529 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 314 329 - T 29-03-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AM354_RS06915 8c8ccf926eb89ff8d9a9e5427d7be716 529 Gene3D G3DSA:3.40.50.300 219 400 9.2E-25 T 29-03-2018 AM354_RS06915 8c8ccf926eb89ff8d9a9e5427d7be716 529 Gene3D G3DSA:1.10.10.60 496 529 1.1E-10 T 29-03-2018 AM354_RS06915 8c8ccf926eb89ff8d9a9e5427d7be716 529 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 445 454 - T 29-03-2018 IPR025944 Sigma-54 interaction domain, conserved site AM354_RS06915 8c8ccf926eb89ff8d9a9e5427d7be716 529 Gene3D G3DSA:1.10.8.60 401 477 1.7E-16 T 29-03-2018 AM354_RS06915 8c8ccf926eb89ff8d9a9e5427d7be716 529 Gene3D G3DSA:3.40.50.2300 1 95 6.2E-21 T 29-03-2018 AM354_RS06915 8c8ccf926eb89ff8d9a9e5427d7be716 529 Pfam PF02954 Bacterial regulatory protein, Fis family 498 527 4.1E-11 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AM354_RS06915 8c8ccf926eb89ff8d9a9e5427d7be716 529 SUPERFAMILY SSF46689 445 527 7.47E-10 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS06915 8c8ccf926eb89ff8d9a9e5427d7be716 529 Gene3D G3DSA:1.20.5.170 176 218 7.0E-14 T 29-03-2018 AM354_RS06915 8c8ccf926eb89ff8d9a9e5427d7be716 529 SMART SM00382 239 391 4.8E-11 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS06915 8c8ccf926eb89ff8d9a9e5427d7be716 529 SUPERFAMILY SSF52540 219 464 1.44E-58 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS05870 fd7c2331a0603a14f1a197d3ba9c0b85 107 SUPERFAMILY SSF117782 1 105 2.75E-38 T 29-03-2018 IPR002765 Uncharacterised protein family UPF0145 AM354_RS05870 fd7c2331a0603a14f1a197d3ba9c0b85 107 Hamap MF_00338 UPF0145 protein YbjQ [ybjQ]. 1 105 24.638 T 29-03-2018 IPR002765 Uncharacterised protein family UPF0145 AM354_RS05870 fd7c2331a0603a14f1a197d3ba9c0b85 107 Pfam PF01906 Putative heavy-metal-binding 1 104 2.8E-40 T 29-03-2018 IPR002765 Uncharacterised protein family UPF0145 AM354_RS05870 fd7c2331a0603a14f1a197d3ba9c0b85 107 Gene3D G3DSA:3.30.110.70 1 105 3.3E-36 T 29-03-2018 IPR035439 Uncharacterised protein family UPF0145/C2CD5 Reactome: R-HSA-1445148 AM354_RS14595 b2609851e3fced8cd1a16f3e9fe9ea32 71 PRINTS PR01249 Ribosomal protein L31 signature 46 64 2.1E-22 T 29-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS14595 b2609851e3fced8cd1a16f3e9fe9ea32 71 PRINTS PR01249 Ribosomal protein L31 signature 2 19 2.1E-22 T 29-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS14595 b2609851e3fced8cd1a16f3e9fe9ea32 71 PRINTS PR01249 Ribosomal protein L31 signature 31 46 2.1E-22 T 29-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS14595 b2609851e3fced8cd1a16f3e9fe9ea32 71 ProSitePatterns PS01143 Ribosomal protein L31 signature. 35 56 - T 29-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS14595 b2609851e3fced8cd1a16f3e9fe9ea32 71 SUPERFAMILY SSF143800 1 66 6.28E-27 T 29-03-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS14595 b2609851e3fced8cd1a16f3e9fe9ea32 71 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 65 5.3E-34 T 29-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS14595 b2609851e3fced8cd1a16f3e9fe9ea32 71 Pfam PF01197 Ribosomal protein L31 1 64 4.6E-30 T 29-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS14595 b2609851e3fced8cd1a16f3e9fe9ea32 71 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 68 30.999 T 29-03-2018 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS06260 222d77b246607a21f3d580b5ee611ab7 338 SUPERFAMILY SSF51735 1 337 5.56E-98 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS06260 222d77b246607a21f3d580b5ee611ab7 338 Gene3D G3DSA:3.40.50.720 1 207 8.2E-44 T 29-03-2018 AM354_RS06260 222d77b246607a21f3d580b5ee611ab7 338 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 2 335 3.3E-137 T 29-03-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-70370 AM354_RS06260 222d77b246607a21f3d580b5ee611ab7 338 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 325 2.4E-61 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS06260 222d77b246607a21f3d580b5ee611ab7 338 Gene3D G3DSA:3.90.25.10 252 337 8.1E-22 T 29-03-2018 AM354_RS06260 222d77b246607a21f3d580b5ee611ab7 338 Gene3D G3DSA:3.90.25.10 208 251 3.4E-8 T 29-03-2018 AM354_RS01460 0d568e757a29c12bff7597cc971caede 320 Gene3D G3DSA:3.40.50.620 1 155 2.1E-21 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS01460 0d568e757a29c12bff7597cc971caede 320 SUPERFAMILY SSF52402 155 306 2.09E-23 T 29-03-2018 AM354_RS01460 0d568e757a29c12bff7597cc971caede 320 Pfam PF00582 Universal stress protein family 4 146 1.9E-19 T 29-03-2018 IPR006016 UspA GO:0006950 AM354_RS01460 0d568e757a29c12bff7597cc971caede 320 Pfam PF00582 Universal stress protein family 175 300 2.1E-13 T 29-03-2018 IPR006016 UspA GO:0006950 AM354_RS01460 0d568e757a29c12bff7597cc971caede 320 SUPERFAMILY SSF52402 4 155 2.26E-28 T 29-03-2018 AM354_RS01460 0d568e757a29c12bff7597cc971caede 320 Gene3D G3DSA:3.40.50.620 156 303 2.8E-22 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS08230 ba2269c47c4b8c0267fcab57827ca869 554 Pfam PF00733 Asparagine synthase 212 367 2.7E-59 T 29-03-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 AM354_RS08230 ba2269c47c4b8c0267fcab57827ca869 554 SUPERFAMILY SSF52402 210 479 7.64E-76 T 29-03-2018 AM354_RS08230 ba2269c47c4b8c0267fcab57827ca869 554 Gene3D G3DSA:3.60.20.10 2 193 1.0E-47 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AM354_RS08230 ba2269c47c4b8c0267fcab57827ca869 554 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 372 8.9E-125 T 29-03-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 AM354_RS08230 ba2269c47c4b8c0267fcab57827ca869 554 Gene3D G3DSA:3.40.50.620 194 514 7.2E-90 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS08230 ba2269c47c4b8c0267fcab57827ca869 554 PIRSF PIRSF001589 1 367 4.5E-113 T 29-03-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 AM354_RS08230 ba2269c47c4b8c0267fcab57827ca869 554 PIRSF PIRSF001589 363 507 1.8E-28 T 29-03-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 AM354_RS08230 ba2269c47c4b8c0267fcab57827ca869 554 SUPERFAMILY SSF56235 1 196 3.43E-57 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AM354_RS08230 ba2269c47c4b8c0267fcab57827ca869 554 Pfam PF13537 Glutamine amidotransferase domain 48 165 2.8E-42 T 29-03-2018 IPR017932 Glutamine amidotransferase type 2 domain AM354_RS14130 2980003a2d4e6f3cb5532205bd507370 172 SUPERFAMILY SSF52540 6 168 1.31E-23 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS14130 2980003a2d4e6f3cb5532205bd507370 172 Pfam PF03205 Molybdopterin guanine dinucleotide synthesis protein B 9 142 3.3E-47 T 29-03-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 AM354_RS14130 2980003a2d4e6f3cb5532205bd507370 172 TIGRFAM TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B 9 167 2.8E-46 T 29-03-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 AM354_RS14130 2980003a2d4e6f3cb5532205bd507370 172 Gene3D G3DSA:3.40.50.300 1 172 4.7E-28 T 29-03-2018 AM354_RS14920 c84dc690e29489242165ebd2605b1b84 545 TIGRFAM TIGR01315 5C_CHO_kinase: FGGY-family pentulose kinase 5 538 3.2E-210 T 29-03-2018 IPR006003 FGGY carbohydrate kinase, pentulose kinase GO:0005975|GO:0016773 AM354_RS14920 c84dc690e29489242165ebd2605b1b84 545 PIRSF PIRSF000538 2 543 1.4E-73 T 29-03-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AM354_RS14920 c84dc690e29489242165ebd2605b1b84 545 SUPERFAMILY SSF53067 4 263 4.17E-61 T 29-03-2018 AM354_RS14920 c84dc690e29489242165ebd2605b1b84 545 Gene3D G3DSA:3.30.420.40 277 545 1.6E-63 T 29-03-2018 AM354_RS14920 c84dc690e29489242165ebd2605b1b84 545 Gene3D G3DSA:3.30.420.40 1 263 8.3E-68 T 29-03-2018 AM354_RS14920 c84dc690e29489242165ebd2605b1b84 545 SUPERFAMILY SSF53067 280 532 3.12E-53 T 29-03-2018 AM354_RS14920 c84dc690e29489242165ebd2605b1b84 545 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 282 489 2.5E-40 T 29-03-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AM354_RS14920 c84dc690e29489242165ebd2605b1b84 545 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 262 8.8E-32 T 29-03-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AM354_RS16470 05042592c5866e8788c3f588e84f5225 69 SUPERFAMILY SSF69047 1 69 1.31E-27 T 29-03-2018 IPR008462 CsbD-like domain AM354_RS16470 05042592c5866e8788c3f588e84f5225 69 Pfam PF05532 CsbD-like 4 56 4.1E-23 T 29-03-2018 IPR008462 CsbD-like domain AM354_RS16470 05042592c5866e8788c3f588e84f5225 69 Gene3D G3DSA:1.10.1470.10 1 69 2.2E-24 T 29-03-2018 IPR008462 CsbD-like domain AM354_RS16470 05042592c5866e8788c3f588e84f5225 69 PIRSF PIRSF039008 1 66 2.6E-33 T 29-03-2018 IPR026042 Stress response protein YjbJ AM354_RS11120 d5edabcc1e167bf6c2dc011573981aef 330 SUPERFAMILY SSF51430 1 310 1.57E-103 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS11120 d5edabcc1e167bf6c2dc011573981aef 330 Pfam PF00248 Aldo/keto reductase family 16 308 9.0E-83 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS11120 d5edabcc1e167bf6c2dc011573981aef 330 Gene3D G3DSA:3.20.20.100 1 329 1.5E-110 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS20520 05089d4a355cacea7d9af0b56bfd6d32 76 TIGRFAM TIGR02194 GlrX_NrdH: glutaredoxin-like protein NrdH 3 73 1.2E-33 T 29-03-2018 IPR011909 Glutaredoxin-like protein NrdH GO:0045454 AM354_RS20520 05089d4a355cacea7d9af0b56bfd6d32 76 Gene3D G3DSA:3.40.30.10 1 73 5.2E-16 T 29-03-2018 AM354_RS20520 05089d4a355cacea7d9af0b56bfd6d32 76 Pfam PF00462 Glutaredoxin 3 61 9.4E-15 T 29-03-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 AM354_RS20520 05089d4a355cacea7d9af0b56bfd6d32 76 SUPERFAMILY SSF52833 1 70 6.29E-19 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS12920 b3d8af4039ee20b75491fb0caffbb0d2 543 Hamap MF_00414 Probable protein kinase UbiB [ubiB]. 3 539 57.525 T 29-03-2018 IPR010232 Probable protein kinase UbiB GO:0006744 AM354_RS12920 b3d8af4039ee20b75491fb0caffbb0d2 543 SUPERFAMILY SSF56112 94 158 4.45E-48 T 29-03-2018 IPR011009 Protein kinase-like domain AM354_RS12920 b3d8af4039ee20b75491fb0caffbb0d2 543 SUPERFAMILY SSF56112 193 435 4.45E-48 T 29-03-2018 IPR011009 Protein kinase-like domain AM354_RS12920 b3d8af4039ee20b75491fb0caffbb0d2 543 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 6 445 4.0E-180 T 29-03-2018 IPR010232 Probable protein kinase UbiB GO:0006744 AM354_RS12920 b3d8af4039ee20b75491fb0caffbb0d2 543 Gene3D G3DSA:3.30.200.20 103 244 2.7E-20 T 29-03-2018 AM354_RS12920 b3d8af4039ee20b75491fb0caffbb0d2 543 Pfam PF03109 ABC1 family 113 231 3.6E-35 T 29-03-2018 IPR004147 UbiB domain AM354_RS14955 25579a517b056cd010fd5bea4f18b547 302 Pfam PF03466 LysR substrate binding domain 88 294 2.7E-40 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS14955 25579a517b056cd010fd5bea4f18b547 302 Gene3D G3DSA:3.40.190.10 177 267 3.2E-25 T 29-03-2018 AM354_RS14955 25579a517b056cd010fd5bea4f18b547 302 Gene3D G3DSA:1.10.10.10 3 93 1.2E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS14955 25579a517b056cd010fd5bea4f18b547 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.2E-18 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS14955 25579a517b056cd010fd5bea4f18b547 302 SUPERFAMILY SSF53850 89 299 4.52E-41 T 29-03-2018 AM354_RS14955 25579a517b056cd010fd5bea4f18b547 302 SUPERFAMILY SSF46785 4 85 1.01E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS14955 25579a517b056cd010fd5bea4f18b547 302 Gene3D G3DSA:3.40.190.10 94 176 1.7E-14 T 29-03-2018 AM354_RS06495 7aae4f8392eabee70639be94571d95bc 511 PIRSF PIRSF002741 24 511 6.1E-106 T 29-03-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AM354_RS06495 7aae4f8392eabee70639be94571d95bc 511 Gene3D G3DSA:3.10.105.10 274 485 5.9E-57 T 29-03-2018 AM354_RS06495 7aae4f8392eabee70639be94571d95bc 511 Gene3D G3DSA:3.40.190.10 181 273 1.5E-26 T 29-03-2018 AM354_RS06495 7aae4f8392eabee70639be94571d95bc 511 SUPERFAMILY SSF53850 30 510 5.66E-141 T 29-03-2018 AM354_RS06495 7aae4f8392eabee70639be94571d95bc 511 Gene3D G3DSA:3.90.76.10 36 180 9.6E-40 T 29-03-2018 AM354_RS06495 7aae4f8392eabee70639be94571d95bc 511 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 69 426 3.0E-95 T 29-03-2018 IPR000914 Solute-binding protein family 5 domain AM354_RS08090 6939c54f1bd2b67363c7e0ab5ee3e7fd 326 Gene3D G3DSA:3.60.15.10 21 320 2.6E-29 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS08090 6939c54f1bd2b67363c7e0ab5ee3e7fd 326 ProSitePatterns PS00607 cAMP phosphodiesterases class-II signature. 100 114 - T 29-03-2018 IPR024225 Cyclic-AMP phosphodiesterase class-II, conserved site GO:0008081 AM354_RS08090 6939c54f1bd2b67363c7e0ab5ee3e7fd 326 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 123 144 2.5E-28 T 29-03-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 AM354_RS08090 6939c54f1bd2b67363c7e0ab5ee3e7fd 326 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 96 114 2.5E-28 T 29-03-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 AM354_RS08090 6939c54f1bd2b67363c7e0ab5ee3e7fd 326 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 277 288 2.5E-28 T 29-03-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 AM354_RS08090 6939c54f1bd2b67363c7e0ab5ee3e7fd 326 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 232 243 2.5E-28 T 29-03-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 AM354_RS08090 6939c54f1bd2b67363c7e0ab5ee3e7fd 326 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 251 264 2.5E-28 T 29-03-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 AM354_RS08090 6939c54f1bd2b67363c7e0ab5ee3e7fd 326 PIRSF PIRSF000962 4 326 1.3E-101 T 29-03-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 AM354_RS08090 6939c54f1bd2b67363c7e0ab5ee3e7fd 326 Pfam PF02112 cAMP phosphodiesterases class-II 23 321 1.4E-46 T 29-03-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 AM354_RS08090 6939c54f1bd2b67363c7e0ab5ee3e7fd 326 SUPERFAMILY SSF56281 24 305 1.4E-21 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS10560 09e6b99dcb2f98a4049b29df21f68775 491 Pfam PF02875 Mur ligase family, glutamate ligase domain 326 418 2.0E-21 T 29-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AM354_RS10560 09e6b99dcb2f98a4049b29df21f68775 491 SUPERFAMILY SSF53244 323 477 1.54E-47 T 29-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AM354_RS10560 09e6b99dcb2f98a4049b29df21f68775 491 Gene3D G3DSA:3.40.50.720 1 107 1.0E-19 T 29-03-2018 AM354_RS10560 09e6b99dcb2f98a4049b29df21f68775 491 Gene3D G3DSA:3.90.190.20 325 480 3.2E-37 T 29-03-2018 AM354_RS10560 09e6b99dcb2f98a4049b29df21f68775 491 Gene3D G3DSA:3.40.1190.10 108 324 1.3E-54 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 AM354_RS10560 09e6b99dcb2f98a4049b29df21f68775 491 SUPERFAMILY SSF53623 105 322 1.83E-74 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 AM354_RS10560 09e6b99dcb2f98a4049b29df21f68775 491 Pfam PF01225 Mur ligase family, catalytic domain 21 118 8.6E-30 T 29-03-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 AM354_RS10560 09e6b99dcb2f98a4049b29df21f68775 491 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 19 481 43.786 T 29-03-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS10560 09e6b99dcb2f98a4049b29df21f68775 491 Pfam PF08245 Mur ligase middle domain 124 304 1.5E-26 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 AM354_RS10560 09e6b99dcb2f98a4049b29df21f68775 491 SUPERFAMILY SSF51984 20 106 1.7E-29 T 29-03-2018 AM354_RS10560 09e6b99dcb2f98a4049b29df21f68775 491 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 21 475 2.1E-184 T 29-03-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS13180 0fc10633ec1bcb58ae41a0e4b441e81b 206 Pfam PF01810 LysE type translocator 14 202 6.4E-43 T 29-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AM354_RS13180 0fc10633ec1bcb58ae41a0e4b441e81b 206 PIRSF PIRSF006324 1 205 1.8E-54 T 29-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AM354_RS24785 9e155a325bb4310be26b2bc59bfe56c1 70 SUPERFAMILY SSF50249 2 69 2.1E-25 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS24785 9e155a325bb4310be26b2bc59bfe56c1 70 SMART SM00357 6 70 1.9E-30 T 29-03-2018 IPR011129 Cold shock domain GO:0003676 AM354_RS24785 9e155a325bb4310be26b2bc59bfe56c1 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 29-03-2018 IPR019844 Cold-shock conserved site AM354_RS24785 9e155a325bb4310be26b2bc59bfe56c1 70 Gene3D G3DSA:2.40.50.140 4 70 1.2E-28 T 29-03-2018 AM354_RS24785 9e155a325bb4310be26b2bc59bfe56c1 70 PRINTS PR00050 Cold shock protein signature 7 22 2.4E-17 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM354_RS24785 9e155a325bb4310be26b2bc59bfe56c1 70 PRINTS PR00050 Cold shock protein signature 43 61 2.4E-17 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM354_RS24785 9e155a325bb4310be26b2bc59bfe56c1 70 PRINTS PR00050 Cold shock protein signature 28 37 2.4E-17 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM354_RS24785 9e155a325bb4310be26b2bc59bfe56c1 70 PIRSF PIRSF002599 1 70 1.4E-26 T 29-03-2018 IPR012156 Cold shock, CspA GO:0003676 AM354_RS24785 9e155a325bb4310be26b2bc59bfe56c1 70 Pfam PF00313 'Cold-shock' DNA-binding domain 6 69 9.9E-33 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM354_RS13415 29314bf7c1ac11cdd0b7bbf9b1b9f1bb 1157 Pfam PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) 805 1136 4.3E-126 T 29-03-2018 IPR008410 Cellulose synthase operon C, C-terminal GO:0019867|GO:0030244 AM354_RS13415 29314bf7c1ac11cdd0b7bbf9b1b9f1bb 1157 Gene3D G3DSA:1.25.40.10 457 587 2.7E-11 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS13415 29314bf7c1ac11cdd0b7bbf9b1b9f1bb 1157 Gene3D G3DSA:1.25.40.10 115 346 1.8E-17 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS13415 29314bf7c1ac11cdd0b7bbf9b1b9f1bb 1157 Gene3D G3DSA:1.25.40.10 347 456 1.0E-12 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS13415 29314bf7c1ac11cdd0b7bbf9b1b9f1bb 1157 Gene3D G3DSA:2.40.160.20 944 1135 5.6E-8 T 29-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AM354_RS13415 29314bf7c1ac11cdd0b7bbf9b1b9f1bb 1157 Pfam PF13432 Tetratricopeptide repeat 359 421 7.4E-5 T 29-03-2018 AM354_RS13415 29314bf7c1ac11cdd0b7bbf9b1b9f1bb 1157 Pfam PF13432 Tetratricopeptide repeat 278 337 2.1E-6 T 29-03-2018 AM354_RS13415 29314bf7c1ac11cdd0b7bbf9b1b9f1bb 1157 SUPERFAMILY SSF48452 296 435 5.6E-15 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS13415 29314bf7c1ac11cdd0b7bbf9b1b9f1bb 1157 SUPERFAMILY SSF48452 612 663 2.78E-13 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS13415 29314bf7c1ac11cdd0b7bbf9b1b9f1bb 1157 SUPERFAMILY SSF48452 469 548 2.78E-13 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS13415 29314bf7c1ac11cdd0b7bbf9b1b9f1bb 1157 Pfam PF14559 Tetratricopeptide repeat 616 665 4.0E-8 T 29-03-2018 AM354_RS13415 29314bf7c1ac11cdd0b7bbf9b1b9f1bb 1157 Pfam PF14559 Tetratricopeptide repeat 474 539 3.2E-6 T 29-03-2018 AM354_RS13415 29314bf7c1ac11cdd0b7bbf9b1b9f1bb 1157 Gene3D G3DSA:1.25.40.10 46 114 4.6E-4 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS13415 29314bf7c1ac11cdd0b7bbf9b1b9f1bb 1157 SUPERFAMILY SSF48452 69 338 1.9E-10 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS13415 29314bf7c1ac11cdd0b7bbf9b1b9f1bb 1157 Gene3D G3DSA:1.25.40.10 657 786 5.8E-7 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS13415 29314bf7c1ac11cdd0b7bbf9b1b9f1bb 1157 Gene3D G3DSA:1.25.40.10 588 656 2.3E-7 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS13415 29314bf7c1ac11cdd0b7bbf9b1b9f1bb 1157 SMART SM00028 714 747 460.0 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AM354_RS13415 29314bf7c1ac11cdd0b7bbf9b1b9f1bb 1157 SMART SM00028 354 387 200.0 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AM354_RS13415 29314bf7c1ac11cdd0b7bbf9b1b9f1bb 1157 SMART SM00028 606 639 170.0 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AM354_RS13415 29314bf7c1ac11cdd0b7bbf9b1b9f1bb 1157 SMART SM00028 306 339 0.041 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AM354_RS13415 29314bf7c1ac11cdd0b7bbf9b1b9f1bb 1157 SMART SM00028 272 305 100.0 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AM354_RS13415 29314bf7c1ac11cdd0b7bbf9b1b9f1bb 1157 SMART SM00028 388 421 1.3 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AM354_RS13415 29314bf7c1ac11cdd0b7bbf9b1b9f1bb 1157 SMART SM00028 464 497 0.95 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AM354_RS16715 2eb4119d9bb3ddaa2ccbacf94875e7b3 489 SUPERFAMILY SSF50249 39 128 3.62E-19 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS16715 2eb4119d9bb3ddaa2ccbacf94875e7b3 489 Pfam PF10150 Ribonuclease E/G family 124 393 3.3E-100 T 29-03-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 AM354_RS16715 2eb4119d9bb3ddaa2ccbacf94875e7b3 489 Gene3D G3DSA:2.40.50.140 32 127 9.8E-31 T 29-03-2018 AM354_RS16715 2eb4119d9bb3ddaa2ccbacf94875e7b3 489 Pfam PF00575 S1 RNA binding domain 38 109 4.5E-7 T 29-03-2018 IPR003029 S1 domain GO:0003676 AM354_RS16715 2eb4119d9bb3ddaa2ccbacf94875e7b3 489 SMART SM00316 37 122 2.3E-9 T 29-03-2018 IPR022967 RNA-binding domain, S1 AM354_RS16715 2eb4119d9bb3ddaa2ccbacf94875e7b3 489 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 426 2.4E-174 T 29-03-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 AM354_RS04630 b0b5a7c286ede713717a08615d138892 141 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 97 131 3.8E-8 T 29-03-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 AM354_RS04630 b0b5a7c286ede713717a08615d138892 141 SUPERFAMILY SSF57716 99 137 7.27E-7 T 29-03-2018 AM354_RS04630 b0b5a7c286ede713717a08615d138892 141 SUPERFAMILY SSF109635 3 98 2.88E-23 T 29-03-2018 AM354_RS04630 b0b5a7c286ede713717a08615d138892 141 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 21 128 6.6E-36 T 29-03-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 AM354_RS09695 a4ecf436b675e15c8b1c5b4da833a431 194 Gene3D G3DSA:3.40.50.360 35 190 7.7E-34 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS09695 a4ecf436b675e15c8b1c5b4da833a431 194 SUPERFAMILY SSF52218 39 152 1.7E-18 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS09695 a4ecf436b675e15c8b1c5b4da833a431 194 Pfam PF12682 Flavodoxin 39 191 2.4E-25 T 29-03-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 AM354_RS22340 09b0ecd961ad13937eeae276ab55516d 252 Pfam PF07264 Etoposide-induced protein 2.4 (EI24) 16 232 5.0E-45 T 29-03-2018 AM354_RS22340 09b0ecd961ad13937eeae276ab55516d 252 Hamap MF_00468 Sulfate transporter CysZ [cysZ]. 10 250 29.092 T 29-03-2018 IPR022985 Sulfate transporter CysZ GO:0000103|GO:0005887|GO:0015116 AM354_RS02275 067eaaa0b1e43973f46da923af77a041 398 Gene3D G3DSA:1.20.1250.20 211 396 2.4E-19 T 29-03-2018 AM354_RS02275 067eaaa0b1e43973f46da923af77a041 398 SUPERFAMILY SSF103473 13 389 3.79E-55 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS02275 067eaaa0b1e43973f46da923af77a041 398 Gene3D G3DSA:1.20.1250.20 12 207 6.6E-26 T 29-03-2018 AM354_RS02275 067eaaa0b1e43973f46da923af77a041 398 Pfam PF07690 Major Facilitator Superfamily 23 356 7.8E-37 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS21395 bc6fd3b04bdef6bd87d290e043ad4c48 338 TIGRFAM TIGR00616 rect: recombinase, phage RecT family 12 246 8.7E-89 T 29-03-2018 IPR004590 DNA single-strand annealing protein RecT GO:0003677|GO:0006259 AM354_RS21395 bc6fd3b04bdef6bd87d290e043ad4c48 338 Pfam PF03837 RecT family 51 247 9.6E-55 T 29-03-2018 IPR018330 RecT family GO:0003677|GO:0006259 AM354_RS08480 f70b71106897779f41020d543f7e6f44 301 Gene3D G3DSA:1.10.10.10 1 89 2.5E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS08480 f70b71106897779f41020d543f7e6f44 301 Pfam PF03466 LysR substrate binding domain 90 297 1.9E-42 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS08480 f70b71106897779f41020d543f7e6f44 301 SUPERFAMILY SSF46785 6 114 5.01E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS08480 f70b71106897779f41020d543f7e6f44 301 Gene3D G3DSA:3.40.190.10 91 178 9.1E-12 T 29-03-2018 AM354_RS08480 f70b71106897779f41020d543f7e6f44 301 Gene3D G3DSA:3.40.190.10 179 267 3.3E-29 T 29-03-2018 AM354_RS08480 f70b71106897779f41020d543f7e6f44 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 65 5.6E-21 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS08480 f70b71106897779f41020d543f7e6f44 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 8.9E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS08480 f70b71106897779f41020d543f7e6f44 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 8.9E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS08480 f70b71106897779f41020d543f7e6f44 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 8.9E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS08480 f70b71106897779f41020d543f7e6f44 301 SUPERFAMILY SSF53850 90 299 3.44E-45 T 29-03-2018 AM354_RS06540 b0f91c2f59188929ca6b48ac4313c1d3 217 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 39 46 - T 29-03-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AM354_RS06540 b0f91c2f59188929ca6b48ac4313c1d3 217 Gene3D G3DSA:3.40.1050.10 1 216 3.3E-66 T 29-03-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AM354_RS06540 b0f91c2f59188929ca6b48ac4313c1d3 217 SUPERFAMILY SSF53056 1 203 1.44E-64 T 29-03-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AM354_RS06540 b0f91c2f59188929ca6b48ac4313c1d3 217 SMART SM00947 27 193 1.2E-66 T 29-03-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AM354_RS06540 b0f91c2f59188929ca6b48ac4313c1d3 217 Pfam PF00484 Carbonic anhydrase 34 188 1.5E-48 T 29-03-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AM354_RS06540 b0f91c2f59188929ca6b48ac4313c1d3 217 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 82 102 - T 29-03-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AM354_RS14935 6455ebdb4c8c671b374d0dfb263071cb 499 SUPERFAMILY SSF52540 262 488 6.48E-44 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS14935 6455ebdb4c8c671b374d0dfb263071cb 499 SUPERFAMILY SSF52540 7 234 2.09E-53 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS14935 6455ebdb4c8c671b374d0dfb263071cb 499 SMART SM00382 283 478 0.003 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS14935 6455ebdb4c8c671b374d0dfb263071cb 499 SMART SM00382 32 222 1.0E-6 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS14935 6455ebdb4c8c671b374d0dfb263071cb 499 ProSitePatterns PS00211 ABC transporters family signature. 402 416 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS14935 6455ebdb4c8c671b374d0dfb263071cb 499 Pfam PF00005 ABC transporter 23 174 3.1E-27 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS14935 6455ebdb4c8c671b374d0dfb263071cb 499 Pfam PF00005 ABC transporter 275 429 1.9E-23 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS14935 6455ebdb4c8c671b374d0dfb263071cb 499 Gene3D G3DSA:3.40.50.300 5 241 7.7E-50 T 29-03-2018 AM354_RS14935 6455ebdb4c8c671b374d0dfb263071cb 499 Gene3D G3DSA:3.40.50.300 258 497 1.4E-35 T 29-03-2018 AM354_RS12565 97dc6bf2fab45e64eb52934d3f6a9177 969 Pfam PF00668 Condensation domain 518 957 2.2E-52 T 29-03-2018 IPR001242 Condensation domain AM354_RS12565 97dc6bf2fab45e64eb52934d3f6a9177 969 SUPERFAMILY SSF52777 521 697 2.45E-36 T 29-03-2018 AM354_RS12565 97dc6bf2fab45e64eb52934d3f6a9177 969 SUPERFAMILY SSF52777 36 189 7.78E-16 T 29-03-2018 AM354_RS12565 97dc6bf2fab45e64eb52934d3f6a9177 969 Gene3D G3DSA:1.10.1200.10 409 503 4.4E-14 T 29-03-2018 AM354_RS12565 97dc6bf2fab45e64eb52934d3f6a9177 969 SMART SM00823 Phosphopantetheine attachment site 430 500 0.0016 T 29-03-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 AM354_RS12565 97dc6bf2fab45e64eb52934d3f6a9177 969 Gene3D G3DSA:3.30.559.10 19 217 3.9E-12 T 29-03-2018 AM354_RS12565 97dc6bf2fab45e64eb52934d3f6a9177 969 Gene3D G3DSA:3.30.559.10 504 707 2.0E-32 T 29-03-2018 AM354_RS12565 97dc6bf2fab45e64eb52934d3f6a9177 969 SUPERFAMILY SSF47336 432 495 1.27E-11 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS12565 97dc6bf2fab45e64eb52934d3f6a9177 969 Pfam PF00550 Phosphopantetheine attachment site 442 495 6.0E-9 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS12565 97dc6bf2fab45e64eb52934d3f6a9177 969 SUPERFAMILY SSF52777 702 955 5.0E-36 T 29-03-2018 AM354_RS05240 3c7732b184ff756edbdc90d31b7e387e 188 SUPERFAMILY SSF55729 4 174 1.06E-41 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS05240 3c7732b184ff756edbdc90d31b7e387e 188 Pfam PF13302 Acetyltransferase (GNAT) domain 10 150 1.6E-28 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS05240 3c7732b184ff756edbdc90d31b7e387e 188 Gene3D G3DSA:3.40.630.30 1 182 4.3E-34 T 29-03-2018 AM354_RS05435 69d6ff20f60a0a4e8b11025c19c34de7 218 Pfam PF04993 TfoX N-terminal domain 15 106 9.5E-28 T 29-03-2018 IPR007076 TfoX, N-terminal AM354_RS05435 69d6ff20f60a0a4e8b11025c19c34de7 218 Gene3D G3DSA:1.10.150.20 118 196 6.9E-18 T 29-03-2018 AM354_RS05435 69d6ff20f60a0a4e8b11025c19c34de7 218 PIRSF PIRSF028788 1 207 2.9E-54 T 29-03-2018 IPR026256 Transcriptional regulator, TfoX/Sxy-type AM354_RS05435 69d6ff20f60a0a4e8b11025c19c34de7 218 Pfam PF04994 TfoX C-terminal domain 118 196 1.1E-23 T 29-03-2018 IPR007077 TfoX, C-terminal AM354_RS05435 69d6ff20f60a0a4e8b11025c19c34de7 218 SUPERFAMILY SSF159894 11 107 1.44E-28 T 29-03-2018 AM354_RS05435 69d6ff20f60a0a4e8b11025c19c34de7 218 Gene3D G3DSA:3.30.1460.30 7 108 4.6E-22 T 29-03-2018 AM354_RS14315 bf7d0b045275a79fa6a755d4022818c9 404 Gene3D G3DSA:3.40.50.1950 1 184 3.8E-56 T 29-03-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 AM354_RS14315 bf7d0b045275a79fa6a755d4022818c9 404 Gene3D G3DSA:3.40.50.10300 185 403 2.8E-72 T 29-03-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 AM354_RS14315 bf7d0b045275a79fa6a755d4022818c9 404 SUPERFAMILY SSF102645 185 400 2.62E-80 T 29-03-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 AM354_RS14315 bf7d0b045275a79fa6a755d4022818c9 404 SUPERFAMILY SSF52507 3 178 6.41E-60 T 29-03-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 AM354_RS14315 bf7d0b045275a79fa6a755d4022818c9 404 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 5 395 6.5E-162 T 29-03-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 AM354_RS14315 bf7d0b045275a79fa6a755d4022818c9 404 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 188 369 1.3E-75 T 29-03-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 AM354_RS14315 bf7d0b045275a79fa6a755d4022818c9 404 Pfam PF02441 Flavoprotein 7 176 6.1E-43 T 29-03-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 AM354_RS19115 ce60a727a5e5d96c01411900c0796c63 662 Pfam PF01032 FecCD transport family 360 659 2.9E-70 T 29-03-2018 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 AM354_RS19115 ce60a727a5e5d96c01411900c0796c63 662 Pfam PF01032 FecCD transport family 19 324 2.8E-66 T 29-03-2018 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 AM354_RS19115 ce60a727a5e5d96c01411900c0796c63 662 Gene3D G3DSA:1.10.3470.10 348 662 7.0E-41 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS19115 ce60a727a5e5d96c01411900c0796c63 662 Gene3D G3DSA:1.10.3470.10 4 333 6.9E-47 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS19115 ce60a727a5e5d96c01411900c0796c63 662 SUPERFAMILY SSF81345 9 326 1.18E-59 T 29-03-2018 IPR029022 ABC transporter, BtuC-like AM354_RS19115 ce60a727a5e5d96c01411900c0796c63 662 SUPERFAMILY SSF81345 352 659 3.66E-67 T 29-03-2018 IPR029022 ABC transporter, BtuC-like AM354_RS23560 a8f71bb1d12b17fb5a14921ae37ecaac 527 Gene3D G3DSA:3.20.20.450 265 521 3.0E-77 T 29-03-2018 IPR001633 EAL domain AM354_RS23560 a8f71bb1d12b17fb5a14921ae37ecaac 527 SUPERFAMILY SSF141868 270 522 8.63E-76 T 29-03-2018 IPR001633 EAL domain AM354_RS23560 a8f71bb1d12b17fb5a14921ae37ecaac 527 Pfam PF12792 CSS motif domain associated with EAL 49 243 2.6E-33 T 29-03-2018 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain AM354_RS23560 a8f71bb1d12b17fb5a14921ae37ecaac 527 SMART SM00052 265 510 2.5E-96 T 29-03-2018 IPR001633 EAL domain AM354_RS23560 a8f71bb1d12b17fb5a14921ae37ecaac 527 Pfam PF00563 EAL domain 271 505 7.1E-66 T 29-03-2018 IPR001633 EAL domain AM354_RS05670 0dde29ab38c3ac8568bed45cf34e20b5 557 SUPERFAMILY SSF50249 103 185 1.72E-14 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS05670 0dde29ab38c3ac8568bed45cf34e20b5 557 Pfam PF00575 S1 RNA binding domain 275 347 2.7E-20 T 29-03-2018 IPR003029 S1 domain GO:0003676 AM354_RS05670 0dde29ab38c3ac8568bed45cf34e20b5 557 Pfam PF00575 S1 RNA binding domain 103 171 4.0E-10 T 29-03-2018 IPR003029 S1 domain GO:0003676 AM354_RS05670 0dde29ab38c3ac8568bed45cf34e20b5 557 Pfam PF00575 S1 RNA binding domain 449 520 7.4E-17 T 29-03-2018 IPR003029 S1 domain GO:0003676 AM354_RS05670 0dde29ab38c3ac8568bed45cf34e20b5 557 Pfam PF00575 S1 RNA binding domain 190 260 2.4E-21 T 29-03-2018 IPR003029 S1 domain GO:0003676 AM354_RS05670 0dde29ab38c3ac8568bed45cf34e20b5 557 Pfam PF00575 S1 RNA binding domain 361 434 9.5E-22 T 29-03-2018 IPR003029 S1 domain GO:0003676 AM354_RS05670 0dde29ab38c3ac8568bed45cf34e20b5 557 Pfam PF00575 S1 RNA binding domain 20 78 1.6E-6 T 29-03-2018 IPR003029 S1 domain GO:0003676 AM354_RS05670 0dde29ab38c3ac8568bed45cf34e20b5 557 PIRSF PIRSF002111 1 534 5.4E-221 T 29-03-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 AM354_RS05670 0dde29ab38c3ac8568bed45cf34e20b5 557 Gene3D G3DSA:2.40.50.140 1 92 1.5E-7 T 29-03-2018 AM354_RS05670 0dde29ab38c3ac8568bed45cf34e20b5 557 Gene3D G3DSA:2.40.50.140 96 177 9.7E-8 T 29-03-2018 AM354_RS05670 0dde29ab38c3ac8568bed45cf34e20b5 557 Gene3D G3DSA:2.40.50.140 182 266 2.5E-26 T 29-03-2018 AM354_RS05670 0dde29ab38c3ac8568bed45cf34e20b5 557 SUPERFAMILY SSF50249 1 112 3.51E-19 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS05670 0dde29ab38c3ac8568bed45cf34e20b5 557 SUPERFAMILY SSF50249 362 444 1.25E-20 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS05670 0dde29ab38c3ac8568bed45cf34e20b5 557 SUPERFAMILY SSF50249 189 277 3.88E-27 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS05670 0dde29ab38c3ac8568bed45cf34e20b5 557 Gene3D G3DSA:2.40.50.140 451 550 5.0E-19 T 29-03-2018 AM354_RS05670 0dde29ab38c3ac8568bed45cf34e20b5 557 SUPERFAMILY SSF50249 255 371 1.65E-31 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS05670 0dde29ab38c3ac8568bed45cf34e20b5 557 SUPERFAMILY SSF50249 429 536 3.88E-23 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS05670 0dde29ab38c3ac8568bed45cf34e20b5 557 PRINTS PR00681 Ribosomal protein S1 signature 155 175 2.5E-99 T 29-03-2018 AM354_RS05670 0dde29ab38c3ac8568bed45cf34e20b5 557 PRINTS PR00681 Ribosomal protein S1 signature 21 39 2.5E-99 T 29-03-2018 AM354_RS05670 0dde29ab38c3ac8568bed45cf34e20b5 557 PRINTS PR00681 Ribosomal protein S1 signature 330 348 2.5E-99 T 29-03-2018 AM354_RS05670 0dde29ab38c3ac8568bed45cf34e20b5 557 PRINTS PR00681 Ribosomal protein S1 signature 126 143 2.5E-99 T 29-03-2018 AM354_RS05670 0dde29ab38c3ac8568bed45cf34e20b5 557 PRINTS PR00681 Ribosomal protein S1 signature 212 233 2.5E-99 T 29-03-2018 AM354_RS05670 0dde29ab38c3ac8568bed45cf34e20b5 557 PRINTS PR00681 Ribosomal protein S1 signature 290 309 2.5E-99 T 29-03-2018 AM354_RS05670 0dde29ab38c3ac8568bed45cf34e20b5 557 PRINTS PR00681 Ribosomal protein S1 signature 39 53 2.5E-99 T 29-03-2018 AM354_RS05670 0dde29ab38c3ac8568bed45cf34e20b5 557 PRINTS PR00681 Ribosomal protein S1 signature 108 124 2.5E-99 T 29-03-2018 AM354_RS05670 0dde29ab38c3ac8568bed45cf34e20b5 557 PRINTS PR00681 Ribosomal protein S1 signature 84 103 2.5E-99 T 29-03-2018 AM354_RS05670 0dde29ab38c3ac8568bed45cf34e20b5 557 Gene3D G3DSA:2.40.50.140 361 435 2.3E-20 T 29-03-2018 AM354_RS05670 0dde29ab38c3ac8568bed45cf34e20b5 557 Gene3D G3DSA:2.40.50.140 274 348 2.5E-27 T 29-03-2018 AM354_RS05670 0dde29ab38c3ac8568bed45cf34e20b5 557 SMART SM00316 190 260 2.8E-28 T 29-03-2018 IPR022967 RNA-binding domain, S1 AM354_RS05670 0dde29ab38c3ac8568bed45cf34e20b5 557 SMART SM00316 103 171 5.9E-9 T 29-03-2018 IPR022967 RNA-binding domain, S1 AM354_RS05670 0dde29ab38c3ac8568bed45cf34e20b5 557 SMART SM00316 19 87 1.3E-4 T 29-03-2018 IPR022967 RNA-binding domain, S1 AM354_RS05670 0dde29ab38c3ac8568bed45cf34e20b5 557 SMART SM00316 275 347 2.2E-27 T 29-03-2018 IPR022967 RNA-binding domain, S1 AM354_RS05670 0dde29ab38c3ac8568bed45cf34e20b5 557 SMART SM00316 362 434 3.4E-21 T 29-03-2018 IPR022967 RNA-binding domain, S1 AM354_RS05670 0dde29ab38c3ac8568bed45cf34e20b5 557 SMART SM00316 449 520 7.2E-22 T 29-03-2018 IPR022967 RNA-binding domain, S1 AM354_RS05670 0dde29ab38c3ac8568bed45cf34e20b5 557 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 3 520 2.7E-240 T 29-03-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 AM354_RS22770 13b86f367e398397f88172ce67590fcf 436 Pfam PF00108 Thiolase, N-terminal domain 15 288 1.0E-61 T 29-03-2018 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 AM354_RS22770 13b86f367e398397f88172ce67590fcf 436 SUPERFAMILY SSF53901 296 435 2.2E-32 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS22770 13b86f367e398397f88172ce67590fcf 436 TIGRFAM TIGR02446 FadI: acetyl-CoA C-acyltransferase FadI 7 436 6.2E-259 T 29-03-2018 IPR012806 Acetyl-CoA C-acyltransferase FadI GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 AM354_RS22770 13b86f367e398397f88172ce67590fcf 436 Gene3D G3DSA:3.40.47.10 294 433 2.8E-24 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS22770 13b86f367e398397f88172ce67590fcf 436 PIRSF PIRSF000429 9 436 1.1E-125 T 29-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 AM354_RS22770 13b86f367e398397f88172ce67590fcf 436 Pfam PF02803 Thiolase, C-terminal domain 296 434 1.7E-36 T 29-03-2018 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 AM354_RS22770 13b86f367e398397f88172ce67590fcf 436 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 17 434 9.8E-133 T 29-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 AM354_RS22770 13b86f367e398397f88172ce67590fcf 436 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 95 113 - T 29-03-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 AM354_RS22770 13b86f367e398397f88172ce67590fcf 436 ProSitePatterns PS00099 Thiolases active site. 417 430 - T 29-03-2018 IPR020610 Thiolase, active site GO:0008152|GO:0016747 AM354_RS22770 13b86f367e398397f88172ce67590fcf 436 ProSitePatterns PS00737 Thiolases signature 2. 382 398 - T 29-03-2018 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 AM354_RS22770 13b86f367e398397f88172ce67590fcf 436 Gene3D G3DSA:3.40.47.10 7 293 3.0E-47 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS22770 13b86f367e398397f88172ce67590fcf 436 SUPERFAMILY SSF53901 15 295 4.84E-64 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS22770 13b86f367e398397f88172ce67590fcf 436 Hamap MF_01618 3-ketoacyl-CoA thiolase [fadI]. 2 436 70.612 T 29-03-2018 IPR012806 Acetyl-CoA C-acyltransferase FadI GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 AM354_RS13055 adf84e5a08024e2e602ae8be59cd6c86 285 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 77 90 - T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS13055 adf84e5a08024e2e602ae8be59cd6c86 285 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 14 284 1.2E-129 T 29-03-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0008270|GO:0009408|GO:0016987 AM354_RS13055 adf84e5a08024e2e602ae8be59cd6c86 285 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 48 280 1.2E-34 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS13055 adf84e5a08024e2e602ae8be59cd6c86 285 PRINTS PR00046 Major sigma-70 factor signature 77 90 3.9E-19 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS13055 adf84e5a08024e2e602ae8be59cd6c86 285 PRINTS PR00046 Major sigma-70 factor signature 253 268 3.9E-19 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS13055 adf84e5a08024e2e602ae8be59cd6c86 285 PRINTS PR00046 Major sigma-70 factor signature 233 245 3.9E-19 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS13055 adf84e5a08024e2e602ae8be59cd6c86 285 PRINTS PR00046 Major sigma-70 factor signature 268 279 3.9E-19 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS13055 adf84e5a08024e2e602ae8be59cd6c86 285 Pfam PF00140 Sigma-70 factor, region 1.2 15 40 4.4E-7 T 29-03-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS13055 adf84e5a08024e2e602ae8be59cd6c86 285 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 253 279 - T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS13055 adf84e5a08024e2e602ae8be59cd6c86 285 PIRSF PIRSF000770 5 285 2.1E-32 T 29-03-2018 AM354_RS13055 adf84e5a08024e2e602ae8be59cd6c86 285 Pfam PF04542 Sigma-70 region 2 53 122 2.8E-16 T 29-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS13055 adf84e5a08024e2e602ae8be59cd6c86 285 SUPERFAMILY SSF88946 12 122 3.66E-40 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS13055 adf84e5a08024e2e602ae8be59cd6c86 285 Gene3D G3DSA:1.10.10.10 223 285 1.2E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS13055 adf84e5a08024e2e602ae8be59cd6c86 285 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 2 285 54.653 T 29-03-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0008270|GO:0009408|GO:0016987 AM354_RS13055 adf84e5a08024e2e602ae8be59cd6c86 285 SUPERFAMILY SSF88659 200 283 1.35E-18 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS13055 adf84e5a08024e2e602ae8be59cd6c86 285 Gene3D G3DSA:1.10.601.10 12 122 1.5E-33 T 29-03-2018 AM354_RS13055 adf84e5a08024e2e602ae8be59cd6c86 285 Pfam PF04545 Sigma-70, region 4 229 280 7.8E-16 T 29-03-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS24920 53fdc0ce6cd900bb4643d4c0a3ce063d 170 Gene3D G3DSA:1.10.10.10 91 163 2.0E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS24920 53fdc0ce6cd900bb4643d4c0a3ce063d 170 Pfam PF04542 Sigma-70 region 2 16 80 3.5E-11 T 29-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS24920 53fdc0ce6cd900bb4643d4c0a3ce063d 170 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 38 68 - T 29-03-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS24920 53fdc0ce6cd900bb4643d4c0a3ce063d 170 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 14 160 1.7E-21 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS24920 53fdc0ce6cd900bb4643d4c0a3ce063d 170 SUPERFAMILY SSF88946 14 101 5.89E-13 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS24920 53fdc0ce6cd900bb4643d4c0a3ce063d 170 Pfam PF08281 Sigma-70, region 4 112 160 3.2E-14 T 29-03-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS24920 53fdc0ce6cd900bb4643d4c0a3ce063d 170 Gene3D G3DSA:1.10.1740.10 1 85 2.0E-14 T 29-03-2018 AM354_RS24920 53fdc0ce6cd900bb4643d4c0a3ce063d 170 SUPERFAMILY SSF88659 108 164 5.23E-13 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS11570 abdd5ee94a3dab54bcdead973300e63c 351 Gene3D G3DSA:3.40.50.2300 178 341 6.7E-50 T 29-03-2018 AM354_RS11570 abdd5ee94a3dab54bcdead973300e63c 351 SMART SM00354 8 78 6.2E-32 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS11570 abdd5ee94a3dab54bcdead973300e63c 351 Pfam PF13377 Periplasmic binding protein-like domain 178 338 4.7E-36 T 29-03-2018 AM354_RS11570 abdd5ee94a3dab54bcdead973300e63c 351 Gene3D G3DSA:3.40.50.2300 65 177 6.2E-20 T 29-03-2018 AM354_RS11570 abdd5ee94a3dab54bcdead973300e63c 351 ProSitePatterns PS00356 LacI-type HTH domain signature. 11 29 - T 29-03-2018 AM354_RS11570 abdd5ee94a3dab54bcdead973300e63c 351 SUPERFAMILY SSF47413 7 66 7.78E-18 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS11570 abdd5ee94a3dab54bcdead973300e63c 351 SUPERFAMILY SSF53822 67 344 1.94E-72 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS11570 abdd5ee94a3dab54bcdead973300e63c 351 Gene3D G3DSA:1.10.260.40 9 64 8.4E-22 T 29-03-2018 AM354_RS11570 abdd5ee94a3dab54bcdead973300e63c 351 Pfam PF00356 Bacterial regulatory proteins, lacI family 10 55 4.3E-18 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS12965 1860a13a0c6c51211720cb0bedb9bbbb 314 SUPERFAMILY SSF46785 1 109 2.67E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS12965 1860a13a0c6c51211720cb0bedb9bbbb 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 2.9E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS12965 1860a13a0c6c51211720cb0bedb9bbbb 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 2.9E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS12965 1860a13a0c6c51211720cb0bedb9bbbb 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 2.9E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS12965 1860a13a0c6c51211720cb0bedb9bbbb 314 Gene3D G3DSA:1.10.10.10 1 87 1.8E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS12965 1860a13a0c6c51211720cb0bedb9bbbb 314 Gene3D G3DSA:3.40.190.10 177 259 2.9E-16 T 29-03-2018 AM354_RS12965 1860a13a0c6c51211720cb0bedb9bbbb 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 9.8E-16 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS12965 1860a13a0c6c51211720cb0bedb9bbbb 314 Gene3D G3DSA:3.40.190.10 88 176 4.8E-21 T 29-03-2018 AM354_RS12965 1860a13a0c6c51211720cb0bedb9bbbb 314 SUPERFAMILY SSF53850 88 291 1.18E-38 T 29-03-2018 AM354_RS12965 1860a13a0c6c51211720cb0bedb9bbbb 314 Pfam PF03466 LysR substrate binding domain 86 288 2.3E-41 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS01975 1b9c2ae7b89cb1a28e7231f7349ac386 512 Gene3D G3DSA:3.40.50.980 175 329 1.3E-48 T 29-03-2018 AM354_RS01975 1b9c2ae7b89cb1a28e7231f7349ac386 512 Gene3D G3DSA:3.40.50.980 2 174 1.4E-39 T 29-03-2018 AM354_RS01975 1b9c2ae7b89cb1a28e7231f7349ac386 512 SUPERFAMILY SSF56801 4 512 8.37E-157 T 29-03-2018 AM354_RS01975 1b9c2ae7b89cb1a28e7231f7349ac386 512 Gene3D G3DSA:2.30.38.10 330 413 7.4E-29 T 29-03-2018 AM354_RS01975 1b9c2ae7b89cb1a28e7231f7349ac386 512 Gene3D G3DSA:3.30.300.30 415 512 1.8E-28 T 29-03-2018 AM354_RS01975 1b9c2ae7b89cb1a28e7231f7349ac386 512 Pfam PF13193 AMP-binding enzyme C-terminal domain 429 505 2.7E-20 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain AM354_RS01975 1b9c2ae7b89cb1a28e7231f7349ac386 512 ProSitePatterns PS00455 Putative AMP-binding domain signature. 169 180 - T 29-03-2018 IPR020845 AMP-binding, conserved site AM354_RS01975 1b9c2ae7b89cb1a28e7231f7349ac386 512 Pfam PF00501 AMP-binding enzyme 8 420 3.5E-110 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM354_RS18055 b11592ab73a8cd9ee19f9c2523b10249 308 PRINTS PR00990 Ribokinase signature 216 227 7.7E-5 T 29-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AM354_RS18055 b11592ab73a8cd9ee19f9c2523b10249 308 PRINTS PR00990 Ribokinase signature 23 42 7.7E-5 T 29-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AM354_RS18055 b11592ab73a8cd9ee19f9c2523b10249 308 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 245 258 - T 29-03-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AM354_RS18055 b11592ab73a8cd9ee19f9c2523b10249 308 SUPERFAMILY SSF53613 1 307 3.59E-82 T 29-03-2018 IPR029056 Ribokinase-like AM354_RS18055 b11592ab73a8cd9ee19f9c2523b10249 308 Pfam PF00294 pfkB family carbohydrate kinase 2 298 3.9E-68 T 29-03-2018 IPR011611 Carbohydrate kinase PfkB AM354_RS18055 b11592ab73a8cd9ee19f9c2523b10249 308 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 28 52 - T 29-03-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AM354_RS18055 b11592ab73a8cd9ee19f9c2523b10249 308 Gene3D G3DSA:3.40.1190.20 3 308 5.5E-72 T 29-03-2018 IPR029056 Ribokinase-like AM354_RS11305 9c2e966c1e720aafce21869a7c592821 394 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 276 350 4.8E-14 T 29-03-2018 IPR023885 4Fe4S-binding SPASM domain AM354_RS11305 9c2e966c1e720aafce21869a7c592821 394 Pfam PF04055 Radical SAM superfamily 30 196 1.8E-14 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AM354_RS11305 9c2e966c1e720aafce21869a7c592821 394 SMART SM00729 23 237 0.0071 T 29-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 AM354_RS11305 9c2e966c1e720aafce21869a7c592821 394 Pfam PF13353 4Fe-4S single cluster domain 32 146 9.6E-5 T 29-03-2018 AM354_RS11305 9c2e966c1e720aafce21869a7c592821 394 SUPERFAMILY SSF102114 24 345 7.32E-40 T 29-03-2018 AM354_RS11305 9c2e966c1e720aafce21869a7c592821 394 TIGRFAM TIGR03942 sulfatase_rSAM: anaerobic sulfatase maturase 24 374 2.1E-118 T 29-03-2018 IPR023867 Anaerobic sulphatase maturase, radical SAM GO:0016491 AM354_RS11305 9c2e966c1e720aafce21869a7c592821 394 Gene3D G3DSA:3.20.20.70 17 340 3.0E-38 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS11305 9c2e966c1e720aafce21869a7c592821 394 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 177 383 4.0E-9 T 29-03-2018 AM354_RS11190 59f4b75fca339b9fd9fd4071103516a6 287 Pfam PF04909 Amidohydrolase 4 276 8.1E-31 T 29-03-2018 IPR006680 Amidohydrolase-related GO:0016787 AM354_RS11190 59f4b75fca339b9fd9fd4071103516a6 287 SUPERFAMILY SSF51556 2 276 2.13E-64 T 29-03-2018 IPR032466 Metal-dependent hydrolase AM354_RS11190 59f4b75fca339b9fd9fd4071103516a6 287 Gene3D G3DSA:3.20.20.140 1 285 4.8E-39 T 29-03-2018 AM354_RS19690 d4f0ff9c4ab3d2c8f244023cb52d5ec7 295 Gene3D G3DSA:3.40.190.10 89 177 1.7E-5 T 29-03-2018 AM354_RS19690 d4f0ff9c4ab3d2c8f244023cb52d5ec7 295 Pfam PF03466 LysR substrate binding domain 89 293 1.0E-29 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS19690 d4f0ff9c4ab3d2c8f244023cb52d5ec7 295 Gene3D G3DSA:3.40.190.10 178 264 4.0E-15 T 29-03-2018 AM354_RS19690 d4f0ff9c4ab3d2c8f244023cb52d5ec7 295 SUPERFAMILY SSF46785 3 83 1.73E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS19690 d4f0ff9c4ab3d2c8f244023cb52d5ec7 295 SUPERFAMILY SSF53850 89 294 1.99E-31 T 29-03-2018 AM354_RS19690 d4f0ff9c4ab3d2c8f244023cb52d5ec7 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 3.4E-13 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS19690 d4f0ff9c4ab3d2c8f244023cb52d5ec7 295 Gene3D G3DSA:1.10.10.10 1 84 1.3E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS07515 9c72cf1c039a23735b93eb5fd5d6afd7 270 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 15 270 1.3E-134 T 29-03-2018 IPR004872 Lipoprotein NlpA family AM354_RS07515 9c72cf1c039a23735b93eb5fd5d6afd7 270 Pfam PF03180 NLPA lipoprotein 32 270 2.6E-91 T 29-03-2018 IPR004872 Lipoprotein NlpA family AM354_RS07515 9c72cf1c039a23735b93eb5fd5d6afd7 270 SUPERFAMILY SSF53850 32 270 7.91E-74 T 29-03-2018 AM354_RS07515 9c72cf1c039a23735b93eb5fd5d6afd7 270 Gene3D G3DSA:3.40.190.10 125 270 5.0E-45 T 29-03-2018 AM354_RS07515 9c72cf1c039a23735b93eb5fd5d6afd7 270 Gene3D G3DSA:3.40.190.10 31 124 3.9E-16 T 29-03-2018 AM354_RS07515 9c72cf1c039a23735b93eb5fd5d6afd7 270 PIRSF PIRSF002854 2 270 3.9E-92 T 29-03-2018 IPR004872 Lipoprotein NlpA family AM354_RS10880 9eef45ac86668515f14b2fc416b5b764 374 SUPERFAMILY SSF57938 129 206 2.22E-24 T 29-03-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 AM354_RS10880 9eef45ac86668515f14b2fc416b5b764 374 Gene3D G3DSA:2.60.260.20 189 249 5.2E-19 T 29-03-2018 AM354_RS10880 9eef45ac86668515f14b2fc416b5b764 374 Pfam PF00226 DnaJ domain 5 66 1.1E-26 T 29-03-2018 IPR001623 DnaJ domain AM354_RS10880 9eef45ac86668515f14b2fc416b5b764 374 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 368 42.89 T 29-03-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 AM354_RS10880 9eef45ac86668515f14b2fc416b5b764 374 SUPERFAMILY SSF46565 1 104 1.83E-36 T 29-03-2018 IPR001623 DnaJ domain AM354_RS10880 9eef45ac86668515f14b2fc416b5b764 374 SUPERFAMILY SSF49493 208 257 2.75E-21 T 29-03-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AM354_RS10880 9eef45ac86668515f14b2fc416b5b764 374 SUPERFAMILY SSF49493 110 164 2.75E-21 T 29-03-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AM354_RS10880 9eef45ac86668515f14b2fc416b5b764 374 PRINTS PR00625 DnaJ domain signature 61 80 6.8E-33 T 29-03-2018 IPR001623 DnaJ domain AM354_RS10880 9eef45ac86668515f14b2fc416b5b764 374 PRINTS PR00625 DnaJ domain signature 25 40 6.8E-33 T 29-03-2018 IPR001623 DnaJ domain AM354_RS10880 9eef45ac86668515f14b2fc416b5b764 374 PRINTS PR00625 DnaJ domain signature 7 25 6.8E-33 T 29-03-2018 IPR001623 DnaJ domain AM354_RS10880 9eef45ac86668515f14b2fc416b5b764 374 PRINTS PR00625 DnaJ domain signature 41 61 6.8E-33 T 29-03-2018 IPR001623 DnaJ domain AM354_RS10880 9eef45ac86668515f14b2fc416b5b764 374 SMART SM00271 4 61 1.1E-29 T 29-03-2018 IPR001623 DnaJ domain AM354_RS10880 9eef45ac86668515f14b2fc416b5b764 374 Gene3D G3DSA:1.10.287.110 1 114 1.7E-37 T 29-03-2018 IPR001623 DnaJ domain AM354_RS10880 9eef45ac86668515f14b2fc416b5b764 374 Gene3D G3DSA:2.60.260.20 250 360 1.8E-27 T 29-03-2018 AM354_RS10880 9eef45ac86668515f14b2fc416b5b764 374 Pfam PF00684 DnaJ central domain 142 202 3.3E-16 T 29-03-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 AM354_RS10880 9eef45ac86668515f14b2fc416b5b764 374 Gene3D G3DSA:2.10.230.10 142 188 8.8E-16 T 29-03-2018 AM354_RS10880 9eef45ac86668515f14b2fc416b5b764 374 Pfam PF01556 DnaJ C terminal domain 116 328 3.0E-46 T 29-03-2018 IPR002939 Chaperone DnaJ, C-terminal AM354_RS10880 9eef45ac86668515f14b2fc416b5b764 374 ProSitePatterns PS00636 Nt-dnaJ domain signature. 46 65 - T 29-03-2018 IPR018253 DnaJ domain, conserved site AM354_RS10880 9eef45ac86668515f14b2fc416b5b764 374 SUPERFAMILY SSF49493 254 339 1.09E-21 T 29-03-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AM354_RS10880 9eef45ac86668515f14b2fc416b5b764 374 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 344 2.5E-143 T 29-03-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 AM354_RS21190 b3bf6d3640bd45def56da5ad16c8c6ae 417 PIRSF PIRSF000412 1 416 1.5E-174 T 29-03-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0006545|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 AM354_RS21190 b3bf6d3640bd45def56da5ad16c8c6ae 417 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 7 417 52.842 T 29-03-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0006545|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 AM354_RS21190 b3bf6d3640bd45def56da5ad16c8c6ae 417 Pfam PF00464 Serine hydroxymethyltransferase 8 386 2.5E-189 T 29-03-2018 AM354_RS21190 b3bf6d3640bd45def56da5ad16c8c6ae 417 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 221 237 - T 29-03-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 AM354_RS21190 b3bf6d3640bd45def56da5ad16c8c6ae 417 Gene3D G3DSA:3.90.1150.10 276 415 1.3E-57 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS21190 b3bf6d3640bd45def56da5ad16c8c6ae 417 SUPERFAMILY SSF53383 6 416 5.23E-183 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS21190 b3bf6d3640bd45def56da5ad16c8c6ae 417 Gene3D G3DSA:3.40.640.10 37 275 7.1E-55 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS11000 dcf775c32e7580f6ba5f26b00ea7aea2 301 Pfam PF12852 Cupin 2 181 3.4E-34 T 29-03-2018 IPR032783 AraC-type transcription regulator, ligand-binding domain AM354_RS11000 dcf775c32e7580f6ba5f26b00ea7aea2 301 SUPERFAMILY SSF46689 250 299 3.94E-12 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS11000 dcf775c32e7580f6ba5f26b00ea7aea2 301 SUPERFAMILY SSF46689 197 247 6.91E-8 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS11000 dcf775c32e7580f6ba5f26b00ea7aea2 301 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 281 297 2.3E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM354_RS11000 dcf775c32e7580f6ba5f26b00ea7aea2 301 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 266 281 2.3E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM354_RS11000 dcf775c32e7580f6ba5f26b00ea7aea2 301 Gene3D G3DSA:2.60.120.280 26 182 2.0E-8 T 29-03-2018 AM354_RS11000 dcf775c32e7580f6ba5f26b00ea7aea2 301 Pfam PF12833 Helix-turn-helix domain 220 298 1.3E-21 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS11000 dcf775c32e7580f6ba5f26b00ea7aea2 301 SMART SM00342 214 297 2.4E-29 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS11000 dcf775c32e7580f6ba5f26b00ea7aea2 301 Gene3D G3DSA:1.10.10.60 253 301 5.8E-14 T 29-03-2018 AM354_RS11000 dcf775c32e7580f6ba5f26b00ea7aea2 301 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 251 293 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM354_RS11000 dcf775c32e7580f6ba5f26b00ea7aea2 301 Gene3D G3DSA:1.10.10.60 196 252 5.1E-10 T 29-03-2018 AM354_RS12385 98bb1103caef80aaab1071c552c504fd 297 Pfam PF02666 Phosphatidylserine decarboxylase 63 284 1.6E-58 T 29-03-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 AM354_RS12385 98bb1103caef80aaab1071c552c504fd 297 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 49 284 5.4E-92 T 29-03-2018 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 AM354_RS12385 98bb1103caef80aaab1071c552c504fd 297 Hamap MF_00662 Phosphatidylserine decarboxylase proenzyme [psd]. 10 287 48.88 T 29-03-2018 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 AM354_RS02730 8c1c57e9129794763851e4b81aea34f7 379 Pfam PF00571 CBS domain 262 305 4.3E-4 T 29-03-2018 IPR000644 CBS domain AM354_RS02730 8c1c57e9129794763851e4b81aea34f7 379 Pfam PF00571 CBS domain 322 368 3.0E-5 T 29-03-2018 IPR000644 CBS domain AM354_RS02730 8c1c57e9129794763851e4b81aea34f7 379 SMART SM00116 322 368 23.0 T 29-03-2018 IPR000644 CBS domain AM354_RS02730 8c1c57e9129794763851e4b81aea34f7 379 SMART SM00116 263 311 0.043 T 29-03-2018 IPR000644 CBS domain AM354_RS02730 8c1c57e9129794763851e4b81aea34f7 379 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 20 367 1.9E-106 T 29-03-2018 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 AM354_RS02730 8c1c57e9129794763851e4b81aea34f7 379 SUPERFAMILY SSF54631 255 369 2.81E-16 T 29-03-2018 AM354_RS02730 8c1c57e9129794763851e4b81aea34f7 379 Gene3D G3DSA:3.40.50.300 1 262 6.6E-72 T 29-03-2018 AM354_RS02730 8c1c57e9129794763851e4b81aea34f7 379 SMART SM00382 31 218 8.0E-17 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS02730 8c1c57e9129794763851e4b81aea34f7 379 Gene3D G3DSA:3.10.580.10 263 371 2.8E-12 T 29-03-2018 AM354_RS02730 8c1c57e9129794763851e4b81aea34f7 379 SUPERFAMILY SSF52540 1 244 6.84E-73 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS02730 8c1c57e9129794763851e4b81aea34f7 379 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS02730 8c1c57e9129794763851e4b81aea34f7 379 Pfam PF00005 ABC transporter 22 168 6.1E-35 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS05755 61e4d0c876085795e017a0c6784b7a74 588 SUPERFAMILY SSF52540 362 582 2.93E-63 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS05755 61e4d0c876085795e017a0c6784b7a74 588 Pfam PF00005 ABC transporter 369 513 1.7E-26 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS05755 61e4d0c876085795e017a0c6784b7a74 588 TIGRFAM TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit 21 556 4.7E-195 T 29-03-2018 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD GO:0005524|GO:0016020|GO:0042883 AM354_RS05755 61e4d0c876085795e017a0c6784b7a74 588 Gene3D G3DSA:1.20.1560.10 5 334 4.6E-41 T 29-03-2018 AM354_RS05755 61e4d0c876085795e017a0c6784b7a74 588 SUPERFAMILY SSF90123 11 331 1.03E-53 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM354_RS05755 61e4d0c876085795e017a0c6784b7a74 588 Pfam PF00664 ABC transporter transmembrane region 26 291 2.8E-42 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM354_RS05755 61e4d0c876085795e017a0c6784b7a74 588 ProSitePatterns PS00211 ABC transporters family signature. 486 500 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS05755 61e4d0c876085795e017a0c6784b7a74 588 Gene3D G3DSA:3.40.50.300 335 587 1.2E-58 T 29-03-2018 AM354_RS05755 61e4d0c876085795e017a0c6784b7a74 588 SMART SM00382 375 560 2.0E-13 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS25900 cf190cd8e76831eee38b5ec8b58e46eb 135 Gene3D G3DSA:3.10.180.10 1 135 8.4E-28 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS25900 cf190cd8e76831eee38b5ec8b58e46eb 135 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 4 112 2.7E-12 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AM354_RS25900 cf190cd8e76831eee38b5ec8b58e46eb 135 SUPERFAMILY SSF54593 1 129 8.06E-30 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS04560 1c5fb2cf6e30015d889c1238b2c37cb8 239 SUPERFAMILY SSF52172 1 163 1.85E-31 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS04560 1c5fb2cf6e30015d889c1238b2c37cb8 239 SMART SM00448 2 117 3.2E-22 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS04560 1c5fb2cf6e30015d889c1238b2c37cb8 239 PIRSF PIRSF006171 1 228 1.8E-80 T 29-03-2018 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0001071|GO:0003677|GO:0005737|GO:0009605 AM354_RS04560 1c5fb2cf6e30015d889c1238b2c37cb8 239 SUPERFAMILY SSF46785 172 229 2.72E-5 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS04560 1c5fb2cf6e30015d889c1238b2c37cb8 239 Pfam PF00072 Response regulator receiver domain 4 117 1.2E-21 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS04560 1c5fb2cf6e30015d889c1238b2c37cb8 239 Gene3D G3DSA:3.40.50.2300 1 174 2.7E-29 T 29-03-2018 AM354_RS04560 1c5fb2cf6e30015d889c1238b2c37cb8 239 Gene3D G3DSA:1.10.10.10 175 225 3.0E-4 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS20190 91973fddf5bf0c4d99045710c848d624 185 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 185 28.108 T 29-03-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 AM354_RS20190 91973fddf5bf0c4d99045710c848d624 185 TIGRFAM TIGR00496 frr: ribosome recycling factor 11 185 5.7E-81 T 29-03-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 AM354_RS20190 91973fddf5bf0c4d99045710c848d624 185 Gene3D G3DSA:1.10.132.20 74 184 1.6E-37 T 29-03-2018 AM354_RS20190 91973fddf5bf0c4d99045710c848d624 185 Gene3D G3DSA:1.10.132.20 2 73 1.6E-11 T 29-03-2018 AM354_RS20190 91973fddf5bf0c4d99045710c848d624 185 SUPERFAMILY SSF55194 2 184 1.03E-71 T 29-03-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 AM354_RS20190 91973fddf5bf0c4d99045710c848d624 185 Pfam PF01765 Ribosome recycling factor 20 183 4.9E-64 T 29-03-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 AM354_RS06220 203b1c216e6fc2ee6e1a8d6e1f862d4d 376 SUPERFAMILY SSF53756 9 373 2.63E-72 T 29-03-2018 AM354_RS06220 203b1c216e6fc2ee6e1a8d6e1f862d4d 376 Gene3D G3DSA:3.40.50.2000 12 188 5.7E-9 T 29-03-2018 AM354_RS06220 203b1c216e6fc2ee6e1a8d6e1f862d4d 376 Gene3D G3DSA:3.40.50.2000 189 353 1.6E-32 T 29-03-2018 AM354_RS06220 203b1c216e6fc2ee6e1a8d6e1f862d4d 376 Pfam PF00534 Glycosyl transferases group 1 187 347 1.2E-30 T 29-03-2018 IPR001296 Glycosyl transferase, family 1 AM354_RS06220 203b1c216e6fc2ee6e1a8d6e1f862d4d 376 Pfam PF13439 Glycosyltransferase Family 4 16 175 1.4E-16 T 29-03-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193 AM354_RS08665 cce8f905aa3b69817c45e138191f402c 271 Gene3D G3DSA:3.30.450.40 89 269 2.4E-44 T 29-03-2018 IPR029016 GAF domain-like AM354_RS08665 cce8f905aa3b69817c45e138191f402c 271 SMART SM00346 20 110 9.0E-30 T 29-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AM354_RS08665 cce8f905aa3b69817c45e138191f402c 271 SUPERFAMILY SSF46785 21 93 1.41E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS08665 cce8f905aa3b69817c45e138191f402c 271 Gene3D G3DSA:1.10.10.10 2 81 6.7E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS08665 cce8f905aa3b69817c45e138191f402c 271 Pfam PF01614 Bacterial transcriptional regulator 140 262 3.1E-36 T 29-03-2018 IPR014757 Transcription regulator IclR, C-terminal AM354_RS08665 cce8f905aa3b69817c45e138191f402c 271 SUPERFAMILY SSF55781 85 265 7.19E-48 T 29-03-2018 IPR029016 GAF domain-like AM354_RS08665 cce8f905aa3b69817c45e138191f402c 271 Pfam PF09339 IclR helix-turn-helix domain 22 73 6.1E-12 T 29-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AM354_RS18295 8fbcdb2c212f234c8560fa534a64c7e4 82 Pfam PF10387 Protein of unknown function (DUF2442) 5 71 7.8E-19 T 29-03-2018 IPR018841 Protein of unknown function DUF2442 AM354_RS03665 922e60c5cb669c266fe818a6b4847697 419 TIGRFAM TIGR00882 2A0105: oligosaccharide:H+ symporter 7 397 2.2E-136 T 29-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM354_RS03665 922e60c5cb669c266fe818a6b4847697 419 Pfam PF01306 LacY proton/sugar symporter 5 402 8.8E-137 T 29-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM354_RS03665 922e60c5cb669c266fe818a6b4847697 419 SUPERFAMILY SSF103473 1 401 1.19E-36 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS03665 922e60c5cb669c266fe818a6b4847697 419 Gene3D G3DSA:1.20.1250.20 4 196 5.3E-17 T 29-03-2018 AM354_RS03665 922e60c5cb669c266fe818a6b4847697 419 Gene3D G3DSA:1.20.1250.20 204 403 5.5E-17 T 29-03-2018 AM354_RS03665 922e60c5cb669c266fe818a6b4847697 419 PRINTS PR00174 LacY proton/sugar symporter family signature 343 363 1.4E-78 T 29-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM354_RS03665 922e60c5cb669c266fe818a6b4847697 419 PRINTS PR00174 LacY proton/sugar symporter family signature 212 240 1.4E-78 T 29-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM354_RS03665 922e60c5cb669c266fe818a6b4847697 419 PRINTS PR00174 LacY proton/sugar symporter family signature 281 307 1.4E-78 T 29-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM354_RS03665 922e60c5cb669c266fe818a6b4847697 419 PRINTS PR00174 LacY proton/sugar symporter family signature 68 97 1.4E-78 T 29-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM354_RS03665 922e60c5cb669c266fe818a6b4847697 419 PRINTS PR00174 LacY proton/sugar symporter family signature 145 163 1.4E-78 T 29-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM354_RS03665 922e60c5cb669c266fe818a6b4847697 419 PRINTS PR00174 LacY proton/sugar symporter family signature 312 331 1.4E-78 T 29-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM354_RS03665 922e60c5cb669c266fe818a6b4847697 419 PRINTS PR00174 LacY proton/sugar symporter family signature 257 278 1.4E-78 T 29-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM354_RS03665 922e60c5cb669c266fe818a6b4847697 419 PRINTS PR00174 LacY proton/sugar symporter family signature 103 125 1.4E-78 T 29-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM354_RS06795 011313210e34e267c5f8521376cfe9b9 172 Gene3D G3DSA:2.40.160.20 23 172 3.5E-21 T 29-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AM354_RS06795 011313210e34e267c5f8521376cfe9b9 172 SUPERFAMILY SSF56925 28 172 3.14E-28 T 29-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AM354_RS06795 011313210e34e267c5f8521376cfe9b9 172 ProSitePatterns PS00694 Enterobacterial virulence outer membrane protein signature 1. 47 55 - T 29-03-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 AM354_RS06795 011313210e34e267c5f8521376cfe9b9 172 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 46 58 6.0E-38 T 29-03-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 AM354_RS06795 011313210e34e267c5f8521376cfe9b9 172 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 133 154 6.0E-38 T 29-03-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 AM354_RS06795 011313210e34e267c5f8521376cfe9b9 172 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 160 171 6.0E-38 T 29-03-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 AM354_RS06795 011313210e34e267c5f8521376cfe9b9 172 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 85 108 6.0E-38 T 29-03-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 AM354_RS06795 011313210e34e267c5f8521376cfe9b9 172 ProSitePatterns PS00695 Enterobacterial virulence outer membrane protein signature 2. 164 172 - T 29-03-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 AM354_RS06795 011313210e34e267c5f8521376cfe9b9 172 Pfam PF13505 Outer membrane protein beta-barrel domain 10 172 5.3E-22 T 29-03-2018 IPR027385 Outer membrane protein beta-barrel AM354_RS04760 063076c5413f566e4561ed8821f43d06 125 Gene3D G3DSA:1.10.10.10 29 124 3.4E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS04760 063076c5413f566e4561ed8821f43d06 125 SUPERFAMILY SSF46785 19 123 1.14E-30 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS04760 063076c5413f566e4561ed8821f43d06 125 Pfam PF01638 HxlR-like helix-turn-helix 31 120 6.3E-26 T 29-03-2018 IPR002577 Helix-turn-helix, HxlR type AM354_RS03200 9565b399b472f579dee39e23f4a8d112 408 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 7 407 2.5E-176 T 29-03-2018 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 AM354_RS03200 9565b399b472f579dee39e23f4a8d112 408 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 219 238 - T 29-03-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site AM354_RS03200 9565b399b472f579dee39e23f4a8d112 408 Gene3D G3DSA:3.40.640.10 34 285 6.5E-55 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS03200 9565b399b472f579dee39e23f4a8d112 408 Pfam PF00266 Aminotransferase class-V 26 396 4.6E-151 T 29-03-2018 IPR000192 Aminotransferase class V domain AM354_RS03200 9565b399b472f579dee39e23f4a8d112 408 Gene3D G3DSA:3.90.1150.10 286 403 5.9E-40 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS03200 9565b399b472f579dee39e23f4a8d112 408 Hamap MF_01831 Cysteine desulfurase [sufS]. 1 408 73.519 T 29-03-2018 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 AM354_RS03200 9565b399b472f579dee39e23f4a8d112 408 SUPERFAMILY SSF53383 4 404 4.08E-122 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS19350 6c87462c3fbebb1e5e952bc3a9aaea60 218 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 5 207 4.3E-30 T 29-03-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AM354_RS19350 6c87462c3fbebb1e5e952bc3a9aaea60 218 Gene3D G3DSA:3.20.20.70 2 217 2.0E-39 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS19350 6c87462c3fbebb1e5e952bc3a9aaea60 218 SUPERFAMILY SSF51366 4 216 8.84E-40 T 29-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 AM354_RS19350 6c87462c3fbebb1e5e952bc3a9aaea60 218 SMART SM00934 6 208 2.5E-37 T 29-03-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AM354_RS16460 08b9a24acb100d8e1957a2273adcbea0 202 Gene3D G3DSA:1.10.10.10 1 70 6.9E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS16460 08b9a24acb100d8e1957a2273adcbea0 202 TIGRFAM TIGR00498 lexA: repressor LexA 1 199 1.3E-83 T 29-03-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 AM354_RS16460 08b9a24acb100d8e1957a2273adcbea0 202 SUPERFAMILY SSF46785 3 69 8.68E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS16460 08b9a24acb100d8e1957a2273adcbea0 202 Hamap MF_00015 LexA repressor [lexA]. 3 199 32.463 T 29-03-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 AM354_RS16460 08b9a24acb100d8e1957a2273adcbea0 202 Gene3D G3DSA:2.10.109.10 80 198 5.4E-26 T 29-03-2018 AM354_RS16460 08b9a24acb100d8e1957a2273adcbea0 202 Pfam PF01726 LexA DNA binding domain 1 65 1.5E-29 T 29-03-2018 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 AM354_RS16460 08b9a24acb100d8e1957a2273adcbea0 202 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 122 133 6.8E-13 T 29-03-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 AM354_RS16460 08b9a24acb100d8e1957a2273adcbea0 202 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 111 121 6.8E-13 T 29-03-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 AM354_RS16460 08b9a24acb100d8e1957a2273adcbea0 202 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 150 162 6.8E-13 T 29-03-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 AM354_RS16460 08b9a24acb100d8e1957a2273adcbea0 202 SUPERFAMILY SSF51306 76 198 6.28E-39 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AM354_RS16460 08b9a24acb100d8e1957a2273adcbea0 202 Pfam PF00717 Peptidase S24-like 114 179 2.5E-16 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AM354_RS19200 9f63b6ca45da78e6152e01c1364c3f06 272 Gene3D G3DSA:3.40.50.1820 9 269 6.3E-40 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS19200 9f63b6ca45da78e6152e01c1364c3f06 272 PRINTS PR00111 Alpha/beta hydrolase fold signature 112 125 9.6E-8 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS19200 9f63b6ca45da78e6152e01c1364c3f06 272 PRINTS PR00111 Alpha/beta hydrolase fold signature 98 111 9.6E-8 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS19200 9f63b6ca45da78e6152e01c1364c3f06 272 PRINTS PR00111 Alpha/beta hydrolase fold signature 214 228 9.6E-8 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS19200 9f63b6ca45da78e6152e01c1364c3f06 272 PRINTS PR00111 Alpha/beta hydrolase fold signature 53 68 9.6E-8 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS19200 9f63b6ca45da78e6152e01c1364c3f06 272 SUPERFAMILY SSF53474 8 266 1.58E-50 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS19200 9f63b6ca45da78e6152e01c1364c3f06 272 Pfam PF12697 Alpha/beta hydrolase family 28 256 1.6E-18 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS17030 e81df0d4f42c81e36d54534038ea0d2a 472 PRINTS PR00419 Adrenodoxin reductase family signature 324 337 7.2E-38 T 29-03-2018 AM354_RS17030 e81df0d4f42c81e36d54534038ea0d2a 472 PRINTS PR00419 Adrenodoxin reductase family signature 171 184 7.2E-38 T 29-03-2018 AM354_RS17030 e81df0d4f42c81e36d54534038ea0d2a 472 PRINTS PR00419 Adrenodoxin reductase family signature 148 170 7.2E-38 T 29-03-2018 AM354_RS17030 e81df0d4f42c81e36d54534038ea0d2a 472 PRINTS PR00419 Adrenodoxin reductase family signature 213 223 7.2E-38 T 29-03-2018 AM354_RS17030 e81df0d4f42c81e36d54534038ea0d2a 472 PRINTS PR00419 Adrenodoxin reductase family signature 290 304 7.2E-38 T 29-03-2018 AM354_RS17030 e81df0d4f42c81e36d54534038ea0d2a 472 Gene3D G3DSA:1.10.1060.10 2 146 2.1E-42 T 29-03-2018 AM354_RS17030 e81df0d4f42c81e36d54534038ea0d2a 472 Gene3D G3DSA:3.40.50.720 147 242 4.8E-16 T 29-03-2018 AM354_RS17030 e81df0d4f42c81e36d54534038ea0d2a 472 Gene3D G3DSA:3.40.50.720 390 471 3.8E-7 T 29-03-2018 AM354_RS17030 e81df0d4f42c81e36d54534038ea0d2a 472 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 25 134 3.2E-38 T 29-03-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 AM354_RS17030 e81df0d4f42c81e36d54534038ea0d2a 472 Gene3D G3DSA:3.50.50.60 243 313 1.1E-19 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS17030 e81df0d4f42c81e36d54534038ea0d2a 472 Gene3D G3DSA:3.50.50.60 314 389 4.8E-17 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS17030 e81df0d4f42c81e36d54534038ea0d2a 472 SUPERFAMILY SSF46548 7 157 5.23E-42 T 29-03-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AM354_RS17030 e81df0d4f42c81e36d54534038ea0d2a 472 SUPERFAMILY SSF51971 145 401 2.24E-67 T 29-03-2018 AM354_RS17030 e81df0d4f42c81e36d54534038ea0d2a 472 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 147 459 2.2E-23 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS17030 e81df0d4f42c81e36d54534038ea0d2a 472 TIGRFAM TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit 6 472 3.6E-260 T 29-03-2018 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 GO:0006537|GO:0016639 AM354_RS13005 35b5844746590d77e1ff6a36c0c98a2f 439 SUPERFAMILY SSF53850 27 427 3.42E-75 T 29-03-2018 AM354_RS13005 35b5844746590d77e1ff6a36c0c98a2f 439 Pfam PF13416 Bacterial extracellular solute-binding protein 46 369 5.8E-43 T 29-03-2018 AM354_RS13005 35b5844746590d77e1ff6a36c0c98a2f 439 Gene3D G3DSA:3.40.190.10 156 429 1.1E-40 T 29-03-2018 AM354_RS13005 35b5844746590d77e1ff6a36c0c98a2f 439 Gene3D G3DSA:3.40.190.10 19 155 0.017 T 29-03-2018 AM354_RS13005 35b5844746590d77e1ff6a36c0c98a2f 439 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 142 159 - T 29-03-2018 IPR006061 Solute-binding family 1, conserved site GO:0006810 AM354_RS16860 f5f3bd2c9efb952a6759b00f00f78aca 372 Pfam PF03841 L-seryl-tRNA selenium transferase 76 274 4.1E-14 T 29-03-2018 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 AM354_RS16860 f5f3bd2c9efb952a6759b00f00f78aca 372 Gene3D G3DSA:3.40.640.10 29 262 5.7E-19 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS16860 f5f3bd2c9efb952a6759b00f00f78aca 372 TIGRFAM TIGR01437 selA_rel: uncharacterized pyridoxal phosphate-dependent enzyme 4 366 1.7E-178 T 29-03-2018 IPR006337 Pyridoxal phosphate-dependent enzyme, SelA-like KEGG: 00030+4.3.1.29|MetaCyc: PWY-7310 AM354_RS16860 f5f3bd2c9efb952a6759b00f00f78aca 372 SUPERFAMILY SSF53383 8 367 3.26E-31 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS18890 9e39e4e316cf3c6c8bc297226fd80f62 243 Pfam PF04452 RNA methyltransferase 19 236 7.8E-71 T 29-03-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AM354_RS18890 9e39e4e316cf3c6c8bc297226fd80f62 243 Gene3D G3DSA:3.40.1280.10 74 243 2.3E-55 T 29-03-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AM354_RS18890 9e39e4e316cf3c6c8bc297226fd80f62 243 PIRSF PIRSF015601 2 242 7.8E-52 T 29-03-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AM354_RS18890 9e39e4e316cf3c6c8bc297226fd80f62 243 SUPERFAMILY SSF75217 75 242 6.8E-52 T 29-03-2018 IPR029028 Alpha/beta knot methyltransferases AM354_RS18890 9e39e4e316cf3c6c8bc297226fd80f62 243 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 2 242 3.0E-86 T 29-03-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AM354_RS18890 9e39e4e316cf3c6c8bc297226fd80f62 243 SUPERFAMILY SSF88697 2 67 1.99E-16 T 29-03-2018 IPR015947 PUA-like domain AM354_RS18890 9e39e4e316cf3c6c8bc297226fd80f62 243 Gene3D G3DSA:2.40.240.20 1 73 2.5E-20 T 29-03-2018 AM354_RS10545 efe8dbbd35f5aef061c6d273f9d93597 418 Gene3D G3DSA:3.30.420.40 2 186 9.7E-35 T 29-03-2018 AM354_RS10545 efe8dbbd35f5aef061c6d273f9d93597 418 Hamap MF_02033 Cell division protein FtsA [ftsA]. 6 418 29.5 T 29-03-2018 IPR020823 Cell division protein FtsA GO:0007049 AM354_RS10545 efe8dbbd35f5aef061c6d273f9d93597 418 SMART SM00842 10 196 2.4E-96 T 29-03-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 AM354_RS10545 efe8dbbd35f5aef061c6d273f9d93597 418 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 9 385 2.7E-161 T 29-03-2018 IPR020823 Cell division protein FtsA GO:0007049 AM354_RS10545 efe8dbbd35f5aef061c6d273f9d93597 418 Pfam PF02491 SHS2 domain inserted in FTSA 85 162 5.3E-30 T 29-03-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 AM354_RS10545 efe8dbbd35f5aef061c6d273f9d93597 418 Pfam PF14450 Cell division protein FtsA 207 381 5.4E-24 T 29-03-2018 AM354_RS10545 efe8dbbd35f5aef061c6d273f9d93597 418 Gene3D G3DSA:3.30.420.40 197 247 4.4E-6 T 29-03-2018 AM354_RS10545 efe8dbbd35f5aef061c6d273f9d93597 418 PIRSF PIRSF003101 1 418 4.4E-153 T 29-03-2018 IPR020823 Cell division protein FtsA GO:0007049 AM354_RS10545 efe8dbbd35f5aef061c6d273f9d93597 418 SUPERFAMILY SSF53067 8 221 5.5E-62 T 29-03-2018 AM354_RS10545 efe8dbbd35f5aef061c6d273f9d93597 418 Gene3D G3DSA:3.90.640.10 248 300 2.6E-19 T 29-03-2018 AM354_RS10545 efe8dbbd35f5aef061c6d273f9d93597 418 SUPERFAMILY SSF53067 198 384 1.07E-46 T 29-03-2018 AM354_RS25800 c57b57c2a1651842966ac75ecded217c 472 SUPERFAMILY SSF46785 1 70 2.93E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS25800 c57b57c2a1651842966ac75ecded217c 472 Gene3D G3DSA:1.10.10.10 1 74 5.0E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS25800 c57b57c2a1651842966ac75ecded217c 472 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 66 1.7E-13 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS25800 c57b57c2a1651842966ac75ecded217c 472 Gene3D G3DSA:3.40.640.10 88 372 5.6E-43 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS25800 c57b57c2a1651842966ac75ecded217c 472 Pfam PF00155 Aminotransferase class I and II 146 446 4.6E-28 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM354_RS25800 c57b57c2a1651842966ac75ecded217c 472 Gene3D G3DSA:3.90.1150.10 373 468 3.7E-29 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS25800 c57b57c2a1651842966ac75ecded217c 472 SMART SM00345 7 66 5.2E-15 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS25800 c57b57c2a1651842966ac75ecded217c 472 SUPERFAMILY SSF53383 93 466 6.6E-94 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS06620 aa36ab2527d534914ee483faf667d4d1 238 SUPERFAMILY SSF141868 8 222 3.27E-27 T 29-03-2018 IPR001633 EAL domain AM354_RS06620 aa36ab2527d534914ee483faf667d4d1 238 Pfam PF00563 EAL domain 8 222 1.8E-28 T 29-03-2018 IPR001633 EAL domain AM354_RS06620 aa36ab2527d534914ee483faf667d4d1 238 Gene3D G3DSA:3.20.20.450 5 235 6.8E-29 T 29-03-2018 IPR001633 EAL domain AM354_RS06620 aa36ab2527d534914ee483faf667d4d1 238 SMART SM00052 1 229 5.9E-6 T 29-03-2018 IPR001633 EAL domain AM354_RS12215 ab71021300b57111ff0223661063ac51 206 SUPERFAMILY SSF54534 8 205 1.06E-53 T 29-03-2018 AM354_RS12215 ab71021300b57111ff0223661063ac51 206 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 116 203 6.0E-26 T 29-03-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain AM354_RS12215 ab71021300b57111ff0223661063ac51 206 Gene3D G3DSA:1.10.287.460 1 89 2.1E-19 T 29-03-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 AM354_RS12215 ab71021300b57111ff0223661063ac51 206 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 3 108 1.1E-21 T 29-03-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 AM354_RS12215 ab71021300b57111ff0223661063ac51 206 Gene3D G3DSA:3.10.50.40 90 206 3.6E-39 T 29-03-2018 AM354_RS18040 008f8684b186bae9ccf86aa09f113989 469 Gene3D G3DSA:2.115.10.20 36 366 2.6E-96 T 29-03-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AM354_RS18040 008f8684b186bae9ccf86aa09f113989 469 TIGRFAM TIGR01322 scrB_fam: sucrose-6-phosphate hydrolase 16 442 1.6E-156 T 29-03-2018 IPR006232 Sucrose-6-phosphate hydrolase GO:0004564|GO:0005737|GO:0005975 KEGG: 00052+3.2.1.26|KEGG: 00500+3.2.1.26 AM354_RS18040 008f8684b186bae9ccf86aa09f113989 469 SUPERFAMILY SSF75005 22 336 2.36E-107 T 29-03-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AM354_RS18040 008f8684b186bae9ccf86aa09f113989 469 ProSitePatterns PS00609 Glycosyl hydrolases family 32 active site. 31 44 - T 29-03-2018 IPR018053 Glycoside hydrolase, family 32, active site GO:0004553|GO:0005975 KEGG: 00052+3.2.1.26|KEGG: 00500+3.2.1.26 AM354_RS18040 008f8684b186bae9ccf86aa09f113989 469 Pfam PF08244 Glycosyl hydrolases family 32 C terminal 413 446 8.0E-9 T 29-03-2018 IPR013189 Glycosyl hydrolase family 32, C-terminal AM354_RS18040 008f8684b186bae9ccf86aa09f113989 469 Gene3D G3DSA:2.60.120.560 375 460 9.9E-10 T 29-03-2018 AM354_RS18040 008f8684b186bae9ccf86aa09f113989 469 SUPERFAMILY SSF49899 338 467 2.61E-17 T 29-03-2018 IPR013320 Concanavalin A-like lectin/glucanase domain AM354_RS18040 008f8684b186bae9ccf86aa09f113989 469 SMART SM00640 31 432 1.0E-128 T 29-03-2018 IPR001362 Glycoside hydrolase, family 32 GO:0004553|GO:0005975 AM354_RS18040 008f8684b186bae9ccf86aa09f113989 469 Pfam PF00251 Glycosyl hydrolases family 32 N-terminal domain 31 336 2.9E-99 T 29-03-2018 IPR013148 Glycosyl hydrolase family 32, N-terminal AM354_RS24275 9c5e13d5d001157243625ed34fa934b5 241 Pfam PF12833 Helix-turn-helix domain 37 112 2.2E-18 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS24275 9c5e13d5d001157243625ed34fa934b5 241 Gene3D G3DSA:1.10.10.60 65 125 6.6E-12 T 29-03-2018 AM354_RS24275 9c5e13d5d001157243625ed34fa934b5 241 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 65 107 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM354_RS24275 9c5e13d5d001157243625ed34fa934b5 241 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 95 111 1.3E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM354_RS24275 9c5e13d5d001157243625ed34fa934b5 241 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 80 95 1.3E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM354_RS24275 9c5e13d5d001157243625ed34fa934b5 241 SUPERFAMILY SSF46689 64 114 3.0E-12 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS24275 9c5e13d5d001157243625ed34fa934b5 241 Gene3D G3DSA:1.10.10.60 2 64 2.6E-6 T 29-03-2018 AM354_RS24275 9c5e13d5d001157243625ed34fa934b5 241 SMART SM00342 28 111 4.0E-19 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS24425 5a4c2a69818f529cf7391d6608169fda 245 TIGRFAM TIGR02422 protocat_beta: protocatechuate 3,4-dioxygenase, beta subunit 18 239 5.2E-108 T 29-03-2018 IPR012785 Protocatechuate 3,4-dioxygenase, beta subunit GO:0005506|GO:0018578|GO:0019619|GO:0055114 KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3 AM354_RS24425 5a4c2a69818f529cf7391d6608169fda 245 Pfam PF00775 Dioxygenase 49 231 7.2E-55 T 29-03-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 AM354_RS24425 5a4c2a69818f529cf7391d6608169fda 245 SUPERFAMILY SSF49482 10 240 2.88E-76 T 29-03-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AM354_RS24425 5a4c2a69818f529cf7391d6608169fda 245 Pfam PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal 12 44 6.4E-14 T 29-03-2018 IPR024756 Protocatechuate 3,4-dioxygenase beta subunit, N-terminal KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3 AM354_RS24425 5a4c2a69818f529cf7391d6608169fda 245 Gene3D G3DSA:2.60.130.10 4 240 1.1E-57 T 29-03-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AM354_RS24425 5a4c2a69818f529cf7391d6608169fda 245 ProSitePatterns PS00083 Intradiol ring-cleavage dioxygenases signature. 82 110 - T 29-03-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 AM354_RS06740 400bd4c1833f1198ed36379efec90b32 255 Pfam PF00174 Oxidoreductase molybdopterin binding domain 100 244 1.3E-34 T 29-03-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 AM354_RS06740 400bd4c1833f1198ed36379efec90b32 255 SUPERFAMILY SSF56524 53 254 2.35E-64 T 29-03-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 AM354_RS06740 400bd4c1833f1198ed36379efec90b32 255 Gene3D G3DSA:3.90.420.10 66 254 7.5E-57 T 29-03-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 AM354_RS18800 ac014d54345dba3b91b25f663f83fcc4 358 Pfam PF11873 Domain of unknown function (DUF3393) 3 190 2.0E-77 T 29-03-2018 IPR024570 Murein transglycosylase-C, N-terminal AM354_RS18800 ac014d54345dba3b91b25f663f83fcc4 358 Hamap MF_01616 Membrane-bound lytic murein transglycosylase C [mltC]. 1 357 61.015 T 29-03-2018 IPR023664 Murein transglycosylase-C GO:0009279|GO:0016798|GO:0016998 AM354_RS18800 ac014d54345dba3b91b25f663f83fcc4 358 SUPERFAMILY SSF53955 153 357 1.75E-39 T 29-03-2018 IPR023346 Lysozyme-like domain AM354_RS18800 ac014d54345dba3b91b25f663f83fcc4 358 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 212 240 - T 29-03-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 AM354_RS18800 ac014d54345dba3b91b25f663f83fcc4 358 Gene3D G3DSA:1.10.530.10 181 357 4.0E-36 T 29-03-2018 AM354_RS18800 ac014d54345dba3b91b25f663f83fcc4 358 Pfam PF01464 Transglycosylase SLT domain 194 315 7.6E-34 T 29-03-2018 IPR008258 Transglycosylase SLT domain 1 AM354_RS20930 9aec94b09da95d7ffecbb67b1411132e 160 Pfam PF01668 SmpB protein 14 157 2.1E-57 T 29-03-2018 IPR000037 SsrA-binding protein GO:0003723 AM354_RS20930 9aec94b09da95d7ffecbb67b1411132e 160 Hamap MF_00023 SsrA-binding protein [smpB]. 1 160 72.755 T 29-03-2018 IPR000037 SsrA-binding protein GO:0003723 AM354_RS20930 9aec94b09da95d7ffecbb67b1411132e 160 SUPERFAMILY SSF74982 8 138 2.49E-50 T 29-03-2018 IPR023620 Small protein B AM354_RS20930 9aec94b09da95d7ffecbb67b1411132e 160 TIGRFAM TIGR00086 smpB: SsrA-binding protein 14 156 1.7E-54 T 29-03-2018 IPR000037 SsrA-binding protein GO:0003723 AM354_RS20930 9aec94b09da95d7ffecbb67b1411132e 160 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 14 138 4.0E-52 T 29-03-2018 IPR000037 SsrA-binding protein GO:0003723 AM354_RS20930 9aec94b09da95d7ffecbb67b1411132e 160 Gene3D G3DSA:2.40.280.10 14 133 1.6E-46 T 29-03-2018 IPR023620 Small protein B AM354_RS20930 9aec94b09da95d7ffecbb67b1411132e 160 ProSitePatterns PS01317 SsrA-binding protein. 32 44 - T 29-03-2018 IPR020081 SsrA-binding protein, conserved site AM354_RS08670 239ecfd4d80314fedd3a91ee8b52116d 161 SUPERFAMILY SSF51182 3 151 3.11E-51 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS08670 239ecfd4d80314fedd3a91ee8b52116d 161 Pfam PF04115 Ureidoglycolate lyase 3 158 6.1E-43 T 29-03-2018 IPR007247 Ureidoglycolate lyase GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 AM354_RS08670 239ecfd4d80314fedd3a91ee8b52116d 161 PIRSF PIRSF017306 1 159 1.7E-61 T 29-03-2018 IPR007247 Ureidoglycolate lyase GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 AM354_RS08670 239ecfd4d80314fedd3a91ee8b52116d 161 Gene3D G3DSA:2.60.120.480 1 161 6.8E-43 T 29-03-2018 IPR024060 Ureidoglycolate lyase domain GO:0004848 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 AM354_RS06065 06c3a0bdeb3c4d68d7dfc709d0b07f03 254 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 175 236 3.4E-17 T 29-03-2018 IPR016148 Pili assembly chaperone, C-terminal AM354_RS06065 06c3a0bdeb3c4d68d7dfc709d0b07f03 254 Gene3D G3DSA:2.60.40.10 33 152 3.5E-34 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS06065 06c3a0bdeb3c4d68d7dfc709d0b07f03 254 PRINTS PR00969 Pili chaperone signature 34 43 8.5E-34 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS06065 06c3a0bdeb3c4d68d7dfc709d0b07f03 254 PRINTS PR00969 Pili chaperone signature 80 101 8.5E-34 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS06065 06c3a0bdeb3c4d68d7dfc709d0b07f03 254 PRINTS PR00969 Pili chaperone signature 110 127 8.5E-34 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS06065 06c3a0bdeb3c4d68d7dfc709d0b07f03 254 PRINTS PR00969 Pili chaperone signature 170 185 8.5E-34 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS06065 06c3a0bdeb3c4d68d7dfc709d0b07f03 254 PRINTS PR00969 Pili chaperone signature 133 148 8.5E-34 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS06065 06c3a0bdeb3c4d68d7dfc709d0b07f03 254 SUPERFAMILY SSF49354 34 151 6.02E-38 T 29-03-2018 IPR008962 PapD-like AM354_RS06065 06c3a0bdeb3c4d68d7dfc709d0b07f03 254 SUPERFAMILY SSF49584 159 249 1.83E-25 T 29-03-2018 IPR016148 Pili assembly chaperone, C-terminal AM354_RS06065 06c3a0bdeb3c4d68d7dfc709d0b07f03 254 Gene3D G3DSA:2.60.40.10 155 248 1.5E-24 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS06065 06c3a0bdeb3c4d68d7dfc709d0b07f03 254 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 34 151 6.6E-37 T 29-03-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 AM354_RS06065 06c3a0bdeb3c4d68d7dfc709d0b07f03 254 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 109 126 - T 29-03-2018 IPR018046 Pili assembly chaperone, conserved site AM354_RS08765 59b04b60101266026d9eef48b51ceba4 563 Gene3D G3DSA:1.20.91.10 239 320 3.2E-6 T 29-03-2018 AM354_RS08765 59b04b60101266026d9eef48b51ceba4 563 SUPERFAMILY SSF51735 418 547 5.34E-27 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS08765 59b04b60101266026d9eef48b51ceba4 563 Pfam PF00999 Sodium/hydrogen exchanger family 13 384 1.4E-79 T 29-03-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AM354_RS08765 59b04b60101266026d9eef48b51ceba4 563 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 15 294 1.5E-79 T 29-03-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 AM354_RS08765 59b04b60101266026d9eef48b51ceba4 563 Gene3D G3DSA:3.40.50.720 415 549 5.4E-18 T 29-03-2018 AM354_RS08765 59b04b60101266026d9eef48b51ceba4 563 Pfam PF02254 TrkA-N domain 421 534 1.1E-22 T 29-03-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 AM354_RS19280 12919e95ba2abbc4975ad65c035233d5 361 SUPERFAMILY SSF53659 2 359 9.02E-118 T 29-03-2018 AM354_RS19280 12919e95ba2abbc4975ad65c035233d5 361 TIGRFAM TIGR02089 TTC: tartrate dehydrogenase 3 357 1.5E-171 T 29-03-2018 IPR011829 Tartrate dehydrogenase GO:0016616|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.93|KEGG: 00650+1.1.1.83 AM354_RS19280 12919e95ba2abbc4975ad65c035233d5 361 SMART SM01329 6 355 1.4E-182 T 29-03-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 AM354_RS19280 12919e95ba2abbc4975ad65c035233d5 361 Gene3D G3DSA:3.40.718.10 1 212 1.7E-66 T 29-03-2018 AM354_RS19280 12919e95ba2abbc4975ad65c035233d5 361 Gene3D G3DSA:3.40.718.10 213 360 5.0E-56 T 29-03-2018 AM354_RS19280 12919e95ba2abbc4975ad65c035233d5 361 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 244 263 - T 29-03-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 AM354_RS19280 12919e95ba2abbc4975ad65c035233d5 361 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 6 355 1.5E-86 T 29-03-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 AM354_RS10510 5d315dc3243a57a243023506eb6f043c 63 Hamap MF_00649 DNA gyrase inhibitor YacG [yacG]. 1 57 19.137 T 29-03-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 AM354_RS10510 5d315dc3243a57a243023506eb6f043c 63 Pfam PF03884 DNA gyrase inhibitor YacG 5 54 3.6E-25 T 29-03-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 AM354_RS10510 5d315dc3243a57a243023506eb6f043c 63 SUPERFAMILY SSF57716 2 61 1.57E-22 T 29-03-2018 AM354_RS10510 5d315dc3243a57a243023506eb6f043c 63 Gene3D G3DSA:3.30.50.10 1 58 6.8E-27 T 29-03-2018 IPR013088 Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 AM354_RS11150 af4fa136bc39a75fda28ae7c343b6045 361 Pfam PF00990 Diguanylate cyclase, GGDEF domain 191 345 1.2E-45 T 29-03-2018 IPR000160 GGDEF domain AM354_RS11150 af4fa136bc39a75fda28ae7c343b6045 361 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 188 349 6.3E-44 T 29-03-2018 IPR000160 GGDEF domain AM354_RS11150 af4fa136bc39a75fda28ae7c343b6045 361 SMART SM00267 179 349 4.9E-56 T 29-03-2018 IPR000160 GGDEF domain AM354_RS11150 af4fa136bc39a75fda28ae7c343b6045 361 SUPERFAMILY SSF55073 195 348 1.33E-42 T 29-03-2018 IPR029787 Nucleotide cyclase AM354_RS11150 af4fa136bc39a75fda28ae7c343b6045 361 Gene3D G3DSA:3.30.70.270 184 355 7.1E-49 T 29-03-2018 AM354_RS17015 218da93a656bed5a099768727cce2215 213 SUPERFAMILY SSF52833 11 110 7.75E-23 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS17015 218da93a656bed5a099768727cce2215 213 Gene3D G3DSA:1.20.1050.10 97 209 1.5E-15 T 29-03-2018 AM354_RS17015 218da93a656bed5a099768727cce2215 213 SUPERFAMILY SSF47616 82 208 4.41E-27 T 29-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like AM354_RS17015 218da93a656bed5a099768727cce2215 213 Gene3D G3DSA:3.40.30.10 2 96 1.2E-24 T 29-03-2018 AM354_RS17015 218da93a656bed5a099768727cce2215 213 Pfam PF02798 Glutathione S-transferase, N-terminal domain 10 81 1.6E-18 T 29-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AM354_RS17015 218da93a656bed5a099768727cce2215 213 Pfam PF00043 Glutathione S-transferase, C-terminal domain 101 194 5.5E-12 T 29-03-2018 IPR004046 Glutathione S-transferase, C-terminal AM354_RS22300 30e125f62a15c4711ba6335f6cc63611 362 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS22300 30e125f62a15c4711ba6335f6cc63611 362 SUPERFAMILY SSF50331 239 326 2.21E-9 T 29-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal AM354_RS22300 30e125f62a15c4711ba6335f6cc63611 362 Gene3D G3DSA:3.40.50.300 1 267 5.4E-78 T 29-03-2018 AM354_RS22300 30e125f62a15c4711ba6335f6cc63611 362 Pfam PF00005 ABC transporter 18 164 1.5E-36 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS22300 30e125f62a15c4711ba6335f6cc63611 362 SMART SM00382 27 214 1.9E-18 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS22300 30e125f62a15c4711ba6335f6cc63611 362 SUPERFAMILY SSF52540 3 244 2.08E-86 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS22300 30e125f62a15c4711ba6335f6cc63611 362 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 3 243 1.9E-124 T 29-03-2018 IPR005666 Sulphate transport system permease protein 1 GO:0006810|GO:0016020|GO:0042626 KEGG: 00920+3.6.3.25 AM354_RS08600 129fb38a2aa1966717f1dfad8926d3b5 300 Pfam PF00696 Amino acid kinase family 2 280 7.1E-28 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase AM354_RS08600 129fb38a2aa1966717f1dfad8926d3b5 300 Gene3D G3DSA:3.40.1160.10 1 298 1.7E-46 T 29-03-2018 AM354_RS08600 129fb38a2aa1966717f1dfad8926d3b5 300 PIRSF PIRSF000723 1 300 1.1E-102 T 29-03-2018 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 AM354_RS08600 129fb38a2aa1966717f1dfad8926d3b5 300 SUPERFAMILY SSF53633 1 298 2.09E-70 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase AM354_RS08600 129fb38a2aa1966717f1dfad8926d3b5 300 PRINTS PR01469 Bacterial carbamate kinase signature 72 90 9.7E-53 T 29-03-2018 AM354_RS08600 129fb38a2aa1966717f1dfad8926d3b5 300 PRINTS PR01469 Bacterial carbamate kinase signature 151 170 9.7E-53 T 29-03-2018 AM354_RS08600 129fb38a2aa1966717f1dfad8926d3b5 300 PRINTS PR01469 Bacterial carbamate kinase signature 174 192 9.7E-53 T 29-03-2018 AM354_RS08600 129fb38a2aa1966717f1dfad8926d3b5 300 PRINTS PR01469 Bacterial carbamate kinase signature 103 122 9.7E-53 T 29-03-2018 AM354_RS08600 129fb38a2aa1966717f1dfad8926d3b5 300 PRINTS PR01469 Bacterial carbamate kinase signature 204 219 9.7E-53 T 29-03-2018 AM354_RS08600 129fb38a2aa1966717f1dfad8926d3b5 300 PRINTS PR01469 Bacterial carbamate kinase signature 42 61 9.7E-53 T 29-03-2018 AM354_RS08600 129fb38a2aa1966717f1dfad8926d3b5 300 PRINTS PR01469 Bacterial carbamate kinase signature 255 270 9.7E-53 T 29-03-2018 AM354_RS08600 129fb38a2aa1966717f1dfad8926d3b5 300 TIGRFAM TIGR00746 arcC: carbamate kinase 2 299 9.9E-111 T 29-03-2018 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 AM354_RS06645 2bf8154b906b8e7fbe5da7be59d9b1de 200 Hamap MF_00768 HTH-type transcriptional regulator BetI [betI]. 1 198 109.553 T 29-03-2018 IPR017757 Transcriptional repressor BetI AM354_RS06645 2bf8154b906b8e7fbe5da7be59d9b1de 200 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 84 189 2.6E-33 T 29-03-2018 AM354_RS06645 2bf8154b906b8e7fbe5da7be59d9b1de 200 SUPERFAMILY SSF46689 5 79 1.9E-16 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS06645 2bf8154b906b8e7fbe5da7be59d9b1de 200 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 59 4.9E-13 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS06645 2bf8154b906b8e7fbe5da7be59d9b1de 200 ProSitePatterns PS01081 TetR-type HTH domain signature. 26 57 - T 29-03-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AM354_RS06645 2bf8154b906b8e7fbe5da7be59d9b1de 200 Gene3D G3DSA:1.10.357.10 64 196 1.5E-11 T 29-03-2018 AM354_RS06645 2bf8154b906b8e7fbe5da7be59d9b1de 200 TIGRFAM TIGR03384 betaine_BetI: transcriptional repressor BetI 2 192 3.1E-80 T 29-03-2018 IPR017757 Transcriptional repressor BetI AM354_RS06645 2bf8154b906b8e7fbe5da7be59d9b1de 200 Gene3D G3DSA:1.10.10.60 9 42 8.1E-14 T 29-03-2018 AM354_RS06645 2bf8154b906b8e7fbe5da7be59d9b1de 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 58 1.1E-5 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS06645 2bf8154b906b8e7fbe5da7be59d9b1de 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 14 27 1.1E-5 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS06645 2bf8154b906b8e7fbe5da7be59d9b1de 200 SUPERFAMILY SSF48498 81 195 4.56E-20 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AM354_RS06645 2bf8154b906b8e7fbe5da7be59d9b1de 200 Gene3D G3DSA:1.10.260.40 43 63 1.6E-4 T 29-03-2018 AM354_RS07710 1a63642de2821e7a831575178cdad552 305 Gene3D G3DSA:3.40.50.10680 89 305 1.4E-37 T 29-03-2018 AM354_RS07710 1a63642de2821e7a831575178cdad552 305 Pfam PF01933 Uncharacterised protein family UPF0052 12 290 1.3E-74 T 29-03-2018 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 AM354_RS07710 1a63642de2821e7a831575178cdad552 305 TIGRFAM TIGR01826 CofD_related: conserved hypothetical protein 12 269 1.5E-94 T 29-03-2018 IPR010119 Gluconeogenesis factor AM354_RS07710 1a63642de2821e7a831575178cdad552 305 SUPERFAMILY SSF142338 11 295 4.19E-81 T 29-03-2018 AM354_RS07710 1a63642de2821e7a831575178cdad552 305 Hamap MF_00973 Gluconeogenesis factor. 8 300 31.541 T 29-03-2018 IPR010119 Gluconeogenesis factor AM354_RS23655 dacdf4ead55d4f0223ba0a9fed0af11c 279 Pfam PF01261 Xylose isomerase-like TIM barrel 20 239 2.6E-41 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM354_RS23655 dacdf4ead55d4f0223ba0a9fed0af11c 279 SUPERFAMILY SSF51658 1 277 3.67E-101 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM354_RS23655 dacdf4ead55d4f0223ba0a9fed0af11c 279 Gene3D G3DSA:3.20.20.150 1 279 5.8E-59 T 29-03-2018 AM354_RS23655 dacdf4ead55d4f0223ba0a9fed0af11c 279 TIGRFAM TIGR00587 nfo: apurinic endonuclease (APN1) 3 276 5.5E-107 T 29-03-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 AM354_RS23655 dacdf4ead55d4f0223ba0a9fed0af11c 279 ProSitePatterns PS00731 AP endonucleases family 2 signature 3. 215 231 - T 29-03-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 AM354_RS23655 dacdf4ead55d4f0223ba0a9fed0af11c 279 ProSitePatterns PS00729 AP endonucleases family 2 signature 1. 69 77 - T 29-03-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 AM354_RS23655 dacdf4ead55d4f0223ba0a9fed0af11c 279 SMART SM00518 3 279 7.7E-129 T 29-03-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 AM354_RS23655 dacdf4ead55d4f0223ba0a9fed0af11c 279 ProSitePatterns PS00730 AP endonucleases family 2 signature 2. 175 182 - T 29-03-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 AM354_RS23655 dacdf4ead55d4f0223ba0a9fed0af11c 279 Hamap MF_00152 Probable endonuclease 4 [nfo]. 2 279 43.419 T 29-03-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 AM354_RS21970 e713c970fbc02d9e7f11f4ae98572e3d 216 Pfam PF04239 Protein of unknown function (DUF421) 91 191 2.2E-21 T 29-03-2018 IPR007353 Protein of unknown function DUF421 AM354_RS21970 e713c970fbc02d9e7f11f4ae98572e3d 216 Gene3D G3DSA:3.30.240.20 153 212 1.1E-8 T 29-03-2018 IPR023090 Uncharacterised domain UPF0702, alpha/beta domain AM354_RS21970 e713c970fbc02d9e7f11f4ae98572e3d 216 Gene3D G3DSA:3.30.240.20 82 152 2.7E-16 T 29-03-2018 IPR023090 Uncharacterised domain UPF0702, alpha/beta domain AM354_RS21365 5e10452d040845882aa5bb75b1b495b5 487 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 8 473 2.7E-160 T 29-03-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 AM354_RS21365 5e10452d040845882aa5bb75b1b495b5 487 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 8 486 84.394 T 29-03-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 AM354_RS21365 5e10452d040845882aa5bb75b1b495b5 487 SUPERFAMILY SSF51412 217 477 2.88E-124 T 29-03-2018 AM354_RS21365 5e10452d040845882aa5bb75b1b495b5 487 SUPERFAMILY SSF51412 1 90 2.88E-124 T 29-03-2018 AM354_RS21365 5e10452d040845882aa5bb75b1b495b5 487 Gene3D G3DSA:3.20.20.70 1 482 6.2E-115 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS21365 5e10452d040845882aa5bb75b1b495b5 487 SMART SM00116 158 206 4.8E-7 T 29-03-2018 IPR000644 CBS domain AM354_RS21365 5e10452d040845882aa5bb75b1b495b5 487 SMART SM00116 96 144 1.8E-11 T 29-03-2018 IPR000644 CBS domain AM354_RS21365 5e10452d040845882aa5bb75b1b495b5 487 PIRSF PIRSF000130 1 487 1.3E-195 T 29-03-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 AM354_RS21365 5e10452d040845882aa5bb75b1b495b5 487 Pfam PF00571 CBS domain 149 202 1.1E-4 T 29-03-2018 IPR000644 CBS domain AM354_RS21365 5e10452d040845882aa5bb75b1b495b5 487 Pfam PF00571 CBS domain 95 140 1.7E-9 T 29-03-2018 IPR000644 CBS domain AM354_RS21365 5e10452d040845882aa5bb75b1b495b5 487 SUPERFAMILY SSF54631 94 203 1.89E-25 T 29-03-2018 AM354_RS21365 5e10452d040845882aa5bb75b1b495b5 487 SMART SM01240 7 473 0.0 T 29-03-2018 AM354_RS21365 5e10452d040845882aa5bb75b1b495b5 487 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 295 307 - T 29-03-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 AM354_RS21365 5e10452d040845882aa5bb75b1b495b5 487 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 8 454 2.3E-196 T 29-03-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 AM354_RS03205 79f62d8c4e00226fb47f9e3e4f6815b8 428 Pfam PF01458 Uncharacterized protein family (UPF0051) 175 398 2.5E-72 T 29-03-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 AM354_RS03205 79f62d8c4e00226fb47f9e3e4f6815b8 428 SUPERFAMILY SSF101960 15 424 5.1E-108 T 29-03-2018 AM354_RS03205 79f62d8c4e00226fb47f9e3e4f6815b8 428 TIGRFAM TIGR01981 sufD: FeS assembly protein SufD 137 414 1.1E-85 T 29-03-2018 IPR011542 SUF system FeS cluster assembly, SufD GO:0016226 AM354_RS02530 378d70531c6c8e93906feab6414c89c2 188 Pfam PF02417 Chromate transporter 19 175 2.1E-29 T 29-03-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 AM354_RS00570 582f5f01e6405e8ca6371f035faef683 462 Gene3D G3DSA:3.40.50.300 298 457 6.5E-12 T 29-03-2018 AM354_RS00570 582f5f01e6405e8ca6371f035faef683 462 SUPERFAMILY SSF52540 3 217 6.48E-26 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS00570 582f5f01e6405e8ca6371f035faef683 462 SUPERFAMILY SSF52540 123 184 6.88E-24 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS00570 582f5f01e6405e8ca6371f035faef683 462 SUPERFAMILY SSF52540 304 457 6.88E-24 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS00570 582f5f01e6405e8ca6371f035faef683 462 Pfam PF00176 SNF2 family N-terminal domain 29 266 6.9E-13 T 29-03-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 AM354_RS00570 582f5f01e6405e8ca6371f035faef683 462 SMART SM00487 2 199 1.5E-5 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AM354_RS00570 582f5f01e6405e8ca6371f035faef683 462 Gene3D G3DSA:3.40.50.300 1 187 8.6E-23 T 29-03-2018 AM354_RS13500 2c9b7a4a732613193bb70e9bbdb55d1b 443 ProSitePatterns PS00942 glpT family of transporters signature. 151 167 - T 29-03-2018 IPR021159 Glycerate/sugar phosphate transporter, conserved site GO:0005215|GO:0006810|GO:0016021 Reactome: R-HSA-70153 AM354_RS13500 2c9b7a4a732613193bb70e9bbdb55d1b 443 PIRSF PIRSF002808 6 443 4.8E-145 T 29-03-2018 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 AM354_RS13500 2c9b7a4a732613193bb70e9bbdb55d1b 443 Gene3D G3DSA:1.20.1250.20 237 442 7.3E-27 T 29-03-2018 AM354_RS13500 2c9b7a4a732613193bb70e9bbdb55d1b 443 Pfam PF07690 Major Facilitator Superfamily 36 396 1.2E-50 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS13500 2c9b7a4a732613193bb70e9bbdb55d1b 443 TIGRFAM TIGR00881 2A0104: phosphoglycerate transporter family protein 36 413 2.3E-143 T 29-03-2018 AM354_RS13500 2c9b7a4a732613193bb70e9bbdb55d1b 443 Gene3D G3DSA:1.20.1250.20 19 216 5.1E-33 T 29-03-2018 AM354_RS13500 2c9b7a4a732613193bb70e9bbdb55d1b 443 SUPERFAMILY SSF103473 17 432 5.36E-81 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS20255 752252bb8529e3950b30146466f7ca00 319 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 5 319 50.643 T 29-03-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 AM354_RS20255 752252bb8529e3950b30146466f7ca00 319 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 2 319 5.5E-172 T 29-03-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 AM354_RS20255 752252bb8529e3950b30146466f7ca00 319 Gene3D G3DSA:3.90.226.10 9 316 6.2E-69 T 29-03-2018 AM354_RS20255 752252bb8529e3950b30146466f7ca00 319 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 5 150 2.2E-63 T 29-03-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 AM354_RS20255 752252bb8529e3950b30146466f7ca00 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 91 102 2.0E-49 T 29-03-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 AM354_RS20255 752252bb8529e3950b30146466f7ca00 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 200 209 2.0E-49 T 29-03-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 AM354_RS20255 752252bb8529e3950b30146466f7ca00 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 156 169 2.0E-49 T 29-03-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 AM354_RS20255 752252bb8529e3950b30146466f7ca00 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 116 134 2.0E-49 T 29-03-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 AM354_RS20255 752252bb8529e3950b30146466f7ca00 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 172 185 2.0E-49 T 29-03-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 AM354_RS20255 752252bb8529e3950b30146466f7ca00 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 137 153 2.0E-49 T 29-03-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 AM354_RS20255 752252bb8529e3950b30146466f7ca00 319 SUPERFAMILY SSF52096 5 318 8.85E-106 T 29-03-2018 IPR029045 ClpP/crotonase-like domain AM354_RS12720 01ae17f883e96d640b0b582fee607e09 424 SMART SM00387 312 421 8.6E-23 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS12720 01ae17f883e96d640b0b582fee607e09 424 Gene3D G3DSA:1.10.287.130 195 263 0.0014 T 29-03-2018 AM354_RS12720 01ae17f883e96d640b0b582fee607e09 424 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 313 419 1.3E-20 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS12720 01ae17f883e96d640b0b582fee607e09 424 Gene3D G3DSA:1.20.120.490 73 147 0.0024 T 29-03-2018 IPR024042 Hypothetical protein TM1646-like domain AM354_RS12720 01ae17f883e96d640b0b582fee607e09 424 PRINTS PR00344 Bacterial sensor protein C-terminal signature 405 418 1.6E-10 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS12720 01ae17f883e96d640b0b582fee607e09 424 PRINTS PR00344 Bacterial sensor protein C-terminal signature 348 362 1.6E-10 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS12720 01ae17f883e96d640b0b582fee607e09 424 PRINTS PR00344 Bacterial sensor protein C-terminal signature 381 399 1.6E-10 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS12720 01ae17f883e96d640b0b582fee607e09 424 SUPERFAMILY SSF55874 259 419 2.49E-32 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS12720 01ae17f883e96d640b0b582fee607e09 424 Gene3D G3DSA:3.30.565.10 264 421 6.1E-32 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS10610 8f5d099e9814af94d38611b8141efa57 152 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 1 141 1.0E-76 T 29-03-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 AM354_RS10610 8f5d099e9814af94d38611b8141efa57 152 Gene3D G3DSA:2.10.260.10 81 129 2.6E-4 T 29-03-2018 AM354_RS10610 8f5d099e9814af94d38611b8141efa57 152 Gene3D G3DSA:2.10.260.10 1 59 0.014 T 29-03-2018 AM354_RS10610 8f5d099e9814af94d38611b8141efa57 152 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 1 152 4.4E-64 T 29-03-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 AM354_RS10610 8f5d099e9814af94d38611b8141efa57 152 SUPERFAMILY SSF89447 1 138 3.66E-46 T 29-03-2018 AM354_RS10610 8f5d099e9814af94d38611b8141efa57 152 Pfam PF02381 MraZ protein, putative antitoxin-like 1 75 7.9E-24 T 29-03-2018 IPR020603 MraZ domain AM354_RS10610 8f5d099e9814af94d38611b8141efa57 152 Pfam PF02381 MraZ protein, putative antitoxin-like 77 142 6.0E-21 T 29-03-2018 IPR020603 MraZ domain AM354_RS10610 8f5d099e9814af94d38611b8141efa57 152 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 152 58.3 T 29-03-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 AM354_RS11500 84921256eca40ef26dfa4e5d1c1fe5b0 508 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 15 189 5.7E-13 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS11500 84921256eca40ef26dfa4e5d1c1fe5b0 508 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 323 505 1.0E-18 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS11500 84921256eca40ef26dfa4e5d1c1fe5b0 508 SUPERFAMILY SSF161098 3 189 4.19E-19 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS11500 84921256eca40ef26dfa4e5d1c1fe5b0 508 Gene3D G3DSA:1.10.3720.10 291 504 1.7E-21 T 29-03-2018 AM354_RS11500 84921256eca40ef26dfa4e5d1c1fe5b0 508 Gene3D G3DSA:1.10.3720.10 1 200 2.3E-17 T 29-03-2018 AM354_RS11500 84921256eca40ef26dfa4e5d1c1fe5b0 508 SUPERFAMILY SSF161098 300 488 1.57E-18 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS15480 778e753267bac2b07cb1a4d13826384e 425 Gene3D G3DSA:3.90.550.10 20 335 6.8E-66 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS15480 778e753267bac2b07cb1a4d13826384e 425 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 21 397 1.2E-157 T 29-03-2018 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622 AM354_RS15480 778e753267bac2b07cb1a4d13826384e 425 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 17 423 53.21 T 29-03-2018 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622 AM354_RS15480 778e753267bac2b07cb1a4d13826384e 425 Pfam PF00483 Nucleotidyl transferase 22 291 7.1E-69 T 29-03-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AM354_RS15480 778e753267bac2b07cb1a4d13826384e 425 ProSitePatterns PS00808 ADP-glucose pyrophosphorylase signature 1. 26 45 - T 29-03-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622 AM354_RS15480 778e753267bac2b07cb1a4d13826384e 425 SUPERFAMILY SSF53448 378 392 1.49E-77 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS15480 778e753267bac2b07cb1a4d13826384e 425 SUPERFAMILY SSF53448 20 294 1.49E-77 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS15480 778e753267bac2b07cb1a4d13826384e 425 SUPERFAMILY SSF51161 313 415 1.77E-19 T 29-03-2018 IPR011004 Trimeric LpxA-like AM354_RS15480 778e753267bac2b07cb1a4d13826384e 425 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 113 121 - T 29-03-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622 AM354_RS15480 778e753267bac2b07cb1a4d13826384e 425 Gene3D G3DSA:2.160.10.10 336 418 4.0E-7 T 29-03-2018 AM354_RS20170 1689881ccf592b27b41126925e4e0787 264 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 3 250 2.2E-108 T 29-03-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AM354_RS20170 1689881ccf592b27b41126925e4e0787 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 162 174 9.6E-23 T 29-03-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AM354_RS20170 1689881ccf592b27b41126925e4e0787 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 193 205 9.6E-23 T 29-03-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AM354_RS20170 1689881ccf592b27b41126925e4e0787 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 92 108 9.6E-23 T 29-03-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AM354_RS20170 1689881ccf592b27b41126925e4e0787 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 69 82 9.6E-23 T 29-03-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AM354_RS20170 1689881ccf592b27b41126925e4e0787 264 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 168 186 - T 29-03-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AM354_RS20170 1689881ccf592b27b41126925e4e0787 264 SUPERFAMILY SSF55920 3 255 2.62E-90 T 29-03-2018 IPR000994 Peptidase M24 AM354_RS20170 1689881ccf592b27b41126925e4e0787 264 Hamap MF_01974 Methionine aminopeptidase [map]. 3 251 43.337 T 29-03-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AM354_RS20170 1689881ccf592b27b41126925e4e0787 264 Pfam PF00557 Metallopeptidase family M24 13 242 1.1E-51 T 29-03-2018 IPR000994 Peptidase M24 AM354_RS20170 1689881ccf592b27b41126925e4e0787 264 Gene3D G3DSA:3.90.230.10 1 262 9.0E-87 T 29-03-2018 AM354_RS08895 55bd9a25510dab6b93316784ae5fd286 67 Pfam PF05321 Haemolysin expression modulating protein 8 64 3.4E-33 T 29-03-2018 IPR007985 Haemolysin expression modulating, HHA AM354_RS08895 55bd9a25510dab6b93316784ae5fd286 67 Gene3D G3DSA:1.20.1280.40 1 66 2.4E-34 T 29-03-2018 IPR007985 Haemolysin expression modulating, HHA AM354_RS08895 55bd9a25510dab6b93316784ae5fd286 67 SUPERFAMILY SSF68989 1 67 6.28E-32 T 29-03-2018 IPR007985 Haemolysin expression modulating, HHA AM354_RS08855 35b5ce4e7ab367b9eb8d878396fb1bbe 1048 Gene3D G3DSA:3.30.70.1440 673 770 1.2E-18 T 29-03-2018 AM354_RS08855 35b5ce4e7ab367b9eb8d878396fb1bbe 1048 Gene3D G3DSA:3.30.70.1430 568 669 4.3E-20 T 29-03-2018 AM354_RS08855 35b5ce4e7ab367b9eb8d878396fb1bbe 1048 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 2.6E-115 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS08855 35b5ce4e7ab367b9eb8d878396fb1bbe 1048 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 2.6E-115 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS08855 35b5ce4e7ab367b9eb8d878396fb1bbe 1048 PRINTS PR00702 Acriflavin resistance protein family signature 622 636 2.6E-115 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS08855 35b5ce4e7ab367b9eb8d878396fb1bbe 1048 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 2.6E-115 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS08855 35b5ce4e7ab367b9eb8d878396fb1bbe 1048 PRINTS PR00702 Acriflavin resistance protein family signature 553 570 2.6E-115 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS08855 35b5ce4e7ab367b9eb8d878396fb1bbe 1048 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 2.6E-115 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS08855 35b5ce4e7ab367b9eb8d878396fb1bbe 1048 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 2.6E-115 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS08855 35b5ce4e7ab367b9eb8d878396fb1bbe 1048 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 2.6E-115 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS08855 35b5ce4e7ab367b9eb8d878396fb1bbe 1048 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 2.6E-115 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS08855 35b5ce4e7ab367b9eb8d878396fb1bbe 1048 SUPERFAMILY SSF82693 566 670 9.42E-32 T 29-03-2018 AM354_RS08855 35b5ce4e7ab367b9eb8d878396fb1bbe 1048 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1047 0.0 T 29-03-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 AM354_RS08855 35b5ce4e7ab367b9eb8d878396fb1bbe 1048 Gene3D G3DSA:3.30.2090.10 180 273 7.4E-19 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS08855 35b5ce4e7ab367b9eb8d878396fb1bbe 1048 SUPERFAMILY SSF82866 807 1034 1.57E-45 T 29-03-2018 AM354_RS08855 35b5ce4e7ab367b9eb8d878396fb1bbe 1048 Gene3D G3DSA:1.20.1640.10 826 1032 7.5E-38 T 29-03-2018 AM354_RS08855 35b5ce4e7ab367b9eb8d878396fb1bbe 1048 Gene3D G3DSA:1.20.1640.10 274 500 1.3E-44 T 29-03-2018 AM354_RS08855 35b5ce4e7ab367b9eb8d878396fb1bbe 1048 Pfam PF00873 AcrB/AcrD/AcrF family 1 1029 0.0 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS08855 35b5ce4e7ab367b9eb8d878396fb1bbe 1048 SUPERFAMILY SSF82714 182 272 7.06E-22 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS08855 35b5ce4e7ab367b9eb8d878396fb1bbe 1048 SUPERFAMILY SSF82693 135 182 6.02E-27 T 29-03-2018 AM354_RS08855 35b5ce4e7ab367b9eb8d878396fb1bbe 1048 SUPERFAMILY SSF82693 274 330 6.02E-27 T 29-03-2018 AM354_RS08855 35b5ce4e7ab367b9eb8d878396fb1bbe 1048 SUPERFAMILY SSF82693 38 132 1.2E-27 T 29-03-2018 AM354_RS08855 35b5ce4e7ab367b9eb8d878396fb1bbe 1048 Gene3D G3DSA:3.30.70.1430 38 140 5.1E-30 T 29-03-2018 AM354_RS08855 35b5ce4e7ab367b9eb8d878396fb1bbe 1048 SUPERFAMILY SSF82714 724 811 1.83E-21 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS08855 35b5ce4e7ab367b9eb8d878396fb1bbe 1048 SUPERFAMILY SSF82866 296 497 7.06E-49 T 29-03-2018 AM354_RS22695 0271f059d7673e14f900b1f019358ea6 369 SUPERFAMILY SSF51004 31 351 1.14E-43 T 29-03-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain AM354_RS22695 0271f059d7673e14f900b1f019358ea6 369 Gene3D G3DSA:2.130.10.10 148 369 8.2E-32 T 29-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AM354_RS22695 0271f059d7673e14f900b1f019358ea6 369 Gene3D G3DSA:2.130.10.10 30 147 1.2E-12 T 29-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AM354_RS22695 0271f059d7673e14f900b1f019358ea6 369 Pfam PF10282 Lactonase, 7-bladed beta-propeller 12 367 1.1E-81 T 29-03-2018 IPR019405 Lactonase, 7-bladed beta propeller AM354_RS17075 a65ff0ff7e8c7de174e69bb268cb43c5 196 Pfam PF13580 SIS domain 9 144 2.7E-33 T 29-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AM354_RS17075 a65ff0ff7e8c7de174e69bb268cb43c5 196 SUPERFAMILY SSF53697 3 191 2.63E-50 T 29-03-2018 AM354_RS17075 a65ff0ff7e8c7de174e69bb268cb43c5 196 Gene3D G3DSA:3.40.50.10490 1 196 3.4E-36 T 29-03-2018 AM354_RS17075 a65ff0ff7e8c7de174e69bb268cb43c5 196 Hamap MF_01157 DnaA initiator-associating protein DiaA [diaA]. 1 196 61.064 T 29-03-2018 IPR023070 DnaA initiator-associating protein AM354_RS08080 6e78aa55c280c80b7dc21972a8739e9e 218 SMART SM00796 4 202 2.6E-98 T 29-03-2018 IPR003833 Carboxyltransferase domain, subdomain C and D AM354_RS08080 6e78aa55c280c80b7dc21972a8739e9e 218 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 5 202 1.0E-71 T 29-03-2018 IPR003833 Carboxyltransferase domain, subdomain C and D AM354_RS08080 6e78aa55c280c80b7dc21972a8739e9e 218 SUPERFAMILY SSF50891 88 214 1.37E-44 T 29-03-2018 IPR029000 Cyclophilin-like domain AM354_RS08080 6e78aa55c280c80b7dc21972a8739e9e 218 TIGRFAM TIGR00370 TIGR00370: sensor histidine kinase inhibitor, KipI family 9 211 4.2E-87 T 29-03-2018 IPR010016 KipI family AM354_RS08080 6e78aa55c280c80b7dc21972a8739e9e 218 SUPERFAMILY SSF160467 5 93 1.24E-11 T 29-03-2018 AM354_RS08080 6e78aa55c280c80b7dc21972a8739e9e 218 Gene3D G3DSA:2.40.100.10 86 217 7.4E-51 T 29-03-2018 IPR029000 Cyclophilin-like domain AM354_RS08080 6e78aa55c280c80b7dc21972a8739e9e 218 Gene3D G3DSA:3.30.1360.40 1 84 1.0E-10 T 29-03-2018 IPR024946 Arginine repressor C-terminal-like domain Reactome: R-HSA-4615885 AM354_RS21325 b5bb56a8913d0e2d40144cc0dfe73156 73 Gene3D G3DSA:2.10.290.10 1 71 2.0E-5 T 29-03-2018 AM354_RS21325 b5bb56a8913d0e2d40144cc0dfe73156 73 ProDom PD060428 YFGJ CYTOPLASMIC VP0614 ECS3372 VC0765 YPO2873 Y1359 STY2763A VV0773 5 68 2.0E-19 T 29-03-2018 IPR010807 Protein of unknown function DUF1407 AM354_RS21325 b5bb56a8913d0e2d40144cc0dfe73156 73 SUPERFAMILY SSF161187 1 70 1.7E-27 T 29-03-2018 IPR029037 YfgJ-like AM354_RS21325 b5bb56a8913d0e2d40144cc0dfe73156 73 Pfam PF07191 zinc-ribbons 4 68 1.4E-29 T 29-03-2018 IPR010807 Protein of unknown function DUF1407 AM354_RS09740 908158629131afab5251545133ae61bd 206 Gene3D G3DSA:3.30.420.10 105 190 1.7E-11 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS09740 908158629131afab5251545133ae61bd 206 SUPERFAMILY SSF53098 110 186 9.48E-10 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS09740 908158629131afab5251545133ae61bd 206 Pfam PF00665 Integrase core domain 117 189 4.7E-10 T 29-03-2018 IPR001584 Integrase, catalytic core GO:0015074 AM354_RS09740 908158629131afab5251545133ae61bd 206 Pfam PF13276 HTH-like domain 40 93 6.1E-16 T 29-03-2018 IPR025948 HTH-like domain AM354_RS16305 908158629131afab5251545133ae61bd 206 Gene3D G3DSA:3.30.420.10 105 190 1.7E-11 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS16305 908158629131afab5251545133ae61bd 206 SUPERFAMILY SSF53098 110 186 9.48E-10 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS16305 908158629131afab5251545133ae61bd 206 Pfam PF00665 Integrase core domain 117 189 4.7E-10 T 29-03-2018 IPR001584 Integrase, catalytic core GO:0015074 AM354_RS16305 908158629131afab5251545133ae61bd 206 Pfam PF13276 HTH-like domain 40 93 6.1E-16 T 29-03-2018 IPR025948 HTH-like domain AM354_RS12080 908158629131afab5251545133ae61bd 206 Gene3D G3DSA:3.30.420.10 105 190 1.7E-11 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS12080 908158629131afab5251545133ae61bd 206 SUPERFAMILY SSF53098 110 186 9.48E-10 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS12080 908158629131afab5251545133ae61bd 206 Pfam PF00665 Integrase core domain 117 189 4.7E-10 T 29-03-2018 IPR001584 Integrase, catalytic core GO:0015074 AM354_RS12080 908158629131afab5251545133ae61bd 206 Pfam PF13276 HTH-like domain 40 93 6.1E-16 T 29-03-2018 IPR025948 HTH-like domain AM354_RS11890 e7da203cef498eaf608d22b139fa1979 438 Hamap MF_02073 Putrescine transporter PotE [potE]. 8 435 36.264 T 29-03-2018 IPR027566 Putrescine transporter PotE GO:0015496|GO:0015822|GO:0015847 AM354_RS11890 e7da203cef498eaf608d22b139fa1979 438 PIRSF PIRSF006060 1 436 5.4E-48 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM354_RS11890 e7da203cef498eaf608d22b139fa1979 438 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 1 429 1.3E-141 T 29-03-2018 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 AM354_RS11890 e7da203cef498eaf608d22b139fa1979 438 Pfam PF13520 Amino acid permease 9 415 1.2E-45 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM354_RS11890 e7da203cef498eaf608d22b139fa1979 438 TIGRFAM TIGR04299 antiport_PotE: putrescine-ornithine antiporter 5 432 1.8E-239 T 29-03-2018 IPR027566 Putrescine transporter PotE GO:0015496|GO:0015822|GO:0015847 AM354_RS23065 c7adad653931fceb23f8f98bf3e3eae2 319 Pfam PF02779 Transketolase, pyrimidine binding domain 12 164 8.1E-21 T 29-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AM354_RS23065 c7adad653931fceb23f8f98bf3e3eae2 319 Gene3D G3DSA:3.40.50.970 4 175 1.2E-30 T 29-03-2018 AM354_RS23065 c7adad653931fceb23f8f98bf3e3eae2 319 SMART SM00861 13 179 2.8E-23 T 29-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AM354_RS23065 c7adad653931fceb23f8f98bf3e3eae2 319 SUPERFAMILY SSF52518 9 174 8.03E-34 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS23065 c7adad653931fceb23f8f98bf3e3eae2 319 SUPERFAMILY SSF52922 185 317 1.83E-37 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AM354_RS23065 c7adad653931fceb23f8f98bf3e3eae2 319 Pfam PF02780 Transketolase, C-terminal domain 189 309 3.4E-34 T 29-03-2018 IPR033248 Transketolase, C-terminal domain AM354_RS23065 c7adad653931fceb23f8f98bf3e3eae2 319 Gene3D G3DSA:3.40.50.920 176 319 7.2E-42 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AM354_RS11795 e1809f9f472b7c0ee7d9e9d40d56f6e9 154 Pfam PF13353 4Fe-4S single cluster domain 12 151 6.2E-50 T 29-03-2018 AM354_RS11795 e1809f9f472b7c0ee7d9e9d40d56f6e9 154 ProSitePatterns PS01087 Radical activating enzymes signature. 14 35 - T 29-03-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 AM354_RS11795 e1809f9f472b7c0ee7d9e9d40d56f6e9 154 TIGRFAM TIGR02491 NrdG: anaerobic ribonucleoside-triphosphate reductase activating protein 2 153 5.4E-62 T 29-03-2018 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic GO:0005737|GO:0043365|GO:0051539|GO:0055114 AM354_RS11795 e1809f9f472b7c0ee7d9e9d40d56f6e9 154 Gene3D G3DSA:3.20.20.70 10 132 1.1E-9 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS11795 e1809f9f472b7c0ee7d9e9d40d56f6e9 154 SUPERFAMILY SSF102114 24 110 5.62E-7 T 29-03-2018 AM354_RS11795 e1809f9f472b7c0ee7d9e9d40d56f6e9 154 PIRSF PIRSF000368 1 154 1.2E-58 T 29-03-2018 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic GO:0005737|GO:0043365|GO:0051539|GO:0055114 AM354_RS22140 fe962c1a71ac015be02689d3a8e943b3 210 SMART SM00421 147 204 1.7E-25 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS22140 fe962c1a71ac015be02689d3a8e943b3 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 1.0E-15 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS22140 fe962c1a71ac015be02689d3a8e943b3 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 1.0E-15 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS22140 fe962c1a71ac015be02689d3a8e943b3 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 1.0E-15 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS22140 fe962c1a71ac015be02689d3a8e943b3 210 SMART SM00448 6 119 5.0E-34 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS22140 fe962c1a71ac015be02689d3a8e943b3 210 SUPERFAMILY SSF52172 5 137 3.27E-35 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS22140 fe962c1a71ac015be02689d3a8e943b3 210 SUPERFAMILY SSF46894 130 207 5.78E-23 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS22140 fe962c1a71ac015be02689d3a8e943b3 210 Pfam PF00196 Bacterial regulatory proteins, luxR family 149 203 2.6E-23 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS22140 fe962c1a71ac015be02689d3a8e943b3 210 Gene3D G3DSA:1.10.10.10 131 209 2.4E-26 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS22140 fe962c1a71ac015be02689d3a8e943b3 210 Gene3D G3DSA:3.40.50.2300 5 130 3.2E-35 T 29-03-2018 AM354_RS22140 fe962c1a71ac015be02689d3a8e943b3 210 Pfam PF00072 Response regulator receiver domain 8 119 1.0E-29 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS22140 fe962c1a71ac015be02689d3a8e943b3 210 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS21180 f4274099c54ca2db1bf5b7af23d232ac 394 Gene3D G3DSA:1.10.760.10 145 279 2.0E-19 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS21180 f4274099c54ca2db1bf5b7af23d232ac 394 PIRSF PIRSF000018 6 394 1.0E-136 T 29-03-2018 IPR014353 Membrane-bound alcohol dehydrogenase, cytochrome c subunit GO:0005506|GO:0016020|GO:0016614|GO:0020037 AM354_RS21180 f4274099c54ca2db1bf5b7af23d232ac 394 SUPERFAMILY SSF46626 168 276 1.84E-16 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS21180 f4274099c54ca2db1bf5b7af23d232ac 394 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 20 118 5.6E-5 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS21180 f4274099c54ca2db1bf5b7af23d232ac 394 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 289 369 7.3E-9 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS21180 f4274099c54ca2db1bf5b7af23d232ac 394 Gene3D G3DSA:1.10.760.10 280 394 1.5E-18 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS21180 f4274099c54ca2db1bf5b7af23d232ac 394 SUPERFAMILY SSF46626 18 144 1.39E-19 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS21180 f4274099c54ca2db1bf5b7af23d232ac 394 SUPERFAMILY SSF46626 274 385 6.02E-19 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS21180 f4274099c54ca2db1bf5b7af23d232ac 394 Gene3D G3DSA:1.10.760.10 11 135 3.0E-17 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS11565 71564e0e28aa6a3cb0bd32b0ebe63983 354 SUPERFAMILY SSF51735 1 345 3.8E-95 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS11565 71564e0e28aa6a3cb0bd32b0ebe63983 354 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 2 339 1.7E-157 T 29-03-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 AM354_RS11565 71564e0e28aa6a3cb0bd32b0ebe63983 354 Gene3D G3DSA:3.90.25.10 231 336 2.6E-29 T 29-03-2018 AM354_RS11565 71564e0e28aa6a3cb0bd32b0ebe63983 354 Gene3D G3DSA:3.40.50.720 1 230 5.7E-61 T 29-03-2018 AM354_RS11565 71564e0e28aa6a3cb0bd32b0ebe63983 354 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 326 1.1E-97 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS16535 55fd2f3880aa94d79ab725357c88346b 185 SMART SM01266 7 61 3.2E-18 T 29-03-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 AM354_RS16535 55fd2f3880aa94d79ab725357c88346b 185 Gene3D G3DSA:2.160.10.10 4 185 1.1E-50 T 29-03-2018 AM354_RS16535 55fd2f3880aa94d79ab725357c88346b 185 SUPERFAMILY SSF51161 6 184 1.52E-51 T 29-03-2018 IPR011004 Trimeric LpxA-like AM354_RS16535 55fd2f3880aa94d79ab725357c88346b 185 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 131 166 1.3E-10 T 29-03-2018 IPR001451 Hexapeptide repeat AM354_RS16535 55fd2f3880aa94d79ab725357c88346b 185 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 95 111 0.0091 T 29-03-2018 IPR001451 Hexapeptide repeat AM354_RS16535 55fd2f3880aa94d79ab725357c88346b 185 Pfam PF12464 Maltose acetyltransferase 9 57 4.6E-16 T 29-03-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 AM354_RS16535 55fd2f3880aa94d79ab725357c88346b 185 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 140 168 - T 29-03-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AM354_RS23800 91a821a6fce848fd8c21f8786ff7e07b 496 SMART SM00382 279 480 3.5E-8 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS23800 91a821a6fce848fd8c21f8786ff7e07b 496 SMART SM00382 29 217 2.2E-11 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS23800 91a821a6fce848fd8c21f8786ff7e07b 496 Gene3D G3DSA:3.40.50.300 272 492 1.2E-36 T 29-03-2018 AM354_RS23800 91a821a6fce848fd8c21f8786ff7e07b 496 ProSitePatterns PS00211 ABC transporters family signature. 396 410 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS23800 91a821a6fce848fd8c21f8786ff7e07b 496 Gene3D G3DSA:3.40.50.300 1 269 1.7E-52 T 29-03-2018 AM354_RS23800 91a821a6fce848fd8c21f8786ff7e07b 496 Pfam PF00005 ABC transporter 20 170 2.8E-29 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS23800 91a821a6fce848fd8c21f8786ff7e07b 496 Pfam PF00005 ABC transporter 275 423 1.5E-15 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS23800 91a821a6fce848fd8c21f8786ff7e07b 496 SUPERFAMILY SSF52540 275 486 1.05E-43 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS23800 91a821a6fce848fd8c21f8786ff7e07b 496 SUPERFAMILY SSF52540 3 224 3.74E-58 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS08690 c7fd9cd68e888a7751e10061d395bf2a 133 Gene3D G3DSA:1.10.1660.10 1 55 1.1E-19 T 29-03-2018 AM354_RS08690 c7fd9cd68e888a7751e10061d395bf2a 133 SUPERFAMILY SSF46955 1 126 5.13E-35 T 29-03-2018 IPR009061 Putative DNA-binding domain AM354_RS08690 c7fd9cd68e888a7751e10061d395bf2a 133 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 1.8E-6 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS08690 c7fd9cd68e888a7751e10061d395bf2a 133 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 1.8E-6 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS08690 c7fd9cd68e888a7751e10061d395bf2a 133 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 1.8E-6 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS08690 c7fd9cd68e888a7751e10061d395bf2a 133 TIGRFAM TIGR02044 CueR: Cu(I)-responsive transcriptional regulator 1 126 6.8E-59 T 29-03-2018 IPR011789 Cu(I)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0005507|GO:0045893 AM354_RS08690 c7fd9cd68e888a7751e10061d395bf2a 133 Gene3D G3DSA:1.10.1660.10 56 131 1.3E-16 T 29-03-2018 AM354_RS08690 c7fd9cd68e888a7751e10061d395bf2a 133 SMART SM00422 1 70 1.3E-27 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS08690 c7fd9cd68e888a7751e10061d395bf2a 133 Pfam PF13411 MerR HTH family regulatory protein 1 67 1.8E-18 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS14445 831d1da30060750b10dc3f02b4af26e8 82 Gene3D G3DSA:3.40.30.10 3 82 6.3E-27 T 29-03-2018 AM354_RS14445 831d1da30060750b10dc3f02b4af26e8 82 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 4 82 1.1E-35 T 29-03-2018 IPR011900 Glutaredoxin, GrxC GO:0045454 AM354_RS14445 831d1da30060750b10dc3f02b4af26e8 82 SUPERFAMILY SSF52833 2 82 2.05E-28 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS14445 831d1da30060750b10dc3f02b4af26e8 82 PRINTS PR00160 Glutaredoxin signature 46 59 6.8E-18 T 29-03-2018 IPR014025 Glutaredoxin subgroup AM354_RS14445 831d1da30060750b10dc3f02b4af26e8 82 PRINTS PR00160 Glutaredoxin signature 60 73 6.8E-18 T 29-03-2018 IPR014025 Glutaredoxin subgroup AM354_RS14445 831d1da30060750b10dc3f02b4af26e8 82 PRINTS PR00160 Glutaredoxin signature 4 22 6.8E-18 T 29-03-2018 IPR014025 Glutaredoxin subgroup AM354_RS14445 831d1da30060750b10dc3f02b4af26e8 82 ProSitePatterns PS00195 Glutaredoxin active site. 6 22 - T 29-03-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 AM354_RS14445 831d1da30060750b10dc3f02b4af26e8 82 Pfam PF00462 Glutaredoxin 6 63 4.4E-23 T 29-03-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 AM354_RS25275 437f701e56ce636a9d12fc71e02e6bd4 692 Pfam PF00771 FHIPEP family 31 681 1.9E-267 T 29-03-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AM354_RS25275 437f701e56ce636a9d12fc71e02e6bd4 692 PIRSF PIRSF005419 14 692 2.6E-243 T 29-03-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AM354_RS25275 437f701e56ce636a9d12fc71e02e6bd4 692 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 22 689 3.7E-279 T 29-03-2018 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 AM354_RS25275 437f701e56ce636a9d12fc71e02e6bd4 692 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 147 170 - T 29-03-2018 IPR025505 FHIPEP conserved site AM354_RS25275 437f701e56ce636a9d12fc71e02e6bd4 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 142 158 3.0E-56 T 29-03-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AM354_RS25275 437f701e56ce636a9d12fc71e02e6bd4 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 191 208 3.0E-56 T 29-03-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AM354_RS25275 437f701e56ce636a9d12fc71e02e6bd4 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 75 94 3.0E-56 T 29-03-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AM354_RS25275 437f701e56ce636a9d12fc71e02e6bd4 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 38 51 3.0E-56 T 29-03-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AM354_RS25275 437f701e56ce636a9d12fc71e02e6bd4 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 161 179 3.0E-56 T 29-03-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AM354_RS25275 437f701e56ce636a9d12fc71e02e6bd4 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 242 256 3.0E-56 T 29-03-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AM354_RS08085 ce55a785c824d611b7b940769c052dc4 247 Gene3D G3DSA:3.40.1390.30 1 109 6.5E-27 T 29-03-2018 AM354_RS08085 ce55a785c824d611b7b940769c052dc4 247 Gene3D G3DSA:3.40.1390.30 110 218 4.6E-32 T 29-03-2018 AM354_RS08085 ce55a785c824d611b7b940769c052dc4 247 SUPERFAMILY SSF102705 1 246 1.57E-83 T 29-03-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 AM354_RS08085 ce55a785c824d611b7b940769c052dc4 247 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 1 246 5.0E-72 T 29-03-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 AM354_RS08085 ce55a785c824d611b7b940769c052dc4 247 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 6 233 1.1E-56 T 29-03-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 AM354_RS00870 ccdbf2b5abeab2726061afdcb21ffeb6 301 Gene3D G3DSA:3.30.70.1560 151 219 1.1E-21 T 29-03-2018 AM354_RS00870 ccdbf2b5abeab2726061afdcb21ffeb6 301 Gene3D G3DSA:3.10.290.10 1 63 1.1E-14 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM354_RS00870 ccdbf2b5abeab2726061afdcb21ffeb6 301 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 73 233 1.5E-62 T 29-03-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 AM354_RS00870 ccdbf2b5abeab2726061afdcb21ffeb6 301 SUPERFAMILY SSF55120 69 232 4.32E-44 T 29-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS00870 ccdbf2b5abeab2726061afdcb21ffeb6 301 Gene3D G3DSA:3.30.70.580 64 150 5.3E-19 T 29-03-2018 AM354_RS00870 ccdbf2b5abeab2726061afdcb21ffeb6 301 Pfam PF01479 S4 domain 4 43 1.8E-12 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM354_RS00870 ccdbf2b5abeab2726061afdcb21ffeb6 301 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 107 121 - T 29-03-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 AM354_RS00870 ccdbf2b5abeab2726061afdcb21ffeb6 301 Pfam PF00849 RNA pseudouridylate synthase 69 199 2.0E-17 T 29-03-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS00870 ccdbf2b5abeab2726061afdcb21ffeb6 301 SMART SM00363 3 74 1.6E-11 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM354_RS00870 ccdbf2b5abeab2726061afdcb21ffeb6 301 SUPERFAMILY SSF55174 5 98 3.53E-13 T 29-03-2018 AM354_RS02520 496e31cae1843b33a96b086b09f4c7ba 117 Pfam PF02974 Protease inhibitor Inh 16 108 1.7E-19 T 29-03-2018 IPR021140 Alkaline proteinase inhibitor/ Outer membrane lipoprotein Omp19 AM354_RS02520 496e31cae1843b33a96b086b09f4c7ba 117 SUPERFAMILY SSF50882 11 113 1.62E-21 T 29-03-2018 IPR016085 Protease inhibitor, beta-barrel domain GO:0004866 AM354_RS02520 496e31cae1843b33a96b086b09f4c7ba 117 ProDom PD015804 INHIBITOR PROTEASE METALLOPROTEASE PROTEINASE PRECURSOR SIGNAL PERIPLASMIC METALLOENZYME ALKALINE PRTA-SPECIFIC 19 111 1.0E-10 T 29-03-2018 IPR003086 Metalloprotease inhibitor I38 GO:0004866|GO:0030288 AM354_RS02520 496e31cae1843b33a96b086b09f4c7ba 117 PRINTS PR01274 Metalloprotease inhibitor signature 11 27 5.9E-5 T 29-03-2018 IPR022815 Protease inhibitor I38 AM354_RS02520 496e31cae1843b33a96b086b09f4c7ba 117 PRINTS PR01274 Metalloprotease inhibitor signature 77 90 5.9E-5 T 29-03-2018 IPR022815 Protease inhibitor I38 AM354_RS02520 496e31cae1843b33a96b086b09f4c7ba 117 Gene3D G3DSA:2.40.128.10 17 114 5.4E-18 T 29-03-2018 AM354_RS15345 b4382b55308248454fa675969fac9503 501 Pfam PF00171 Aldehyde dehydrogenase family 16 480 2.6E-135 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM354_RS15345 b4382b55308248454fa675969fac9503 501 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 5 485 1.6E-196 T 29-03-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00410+1.2.1.18|KEGG: 00562+1.2.1.18|KEGG: 00640+1.2.1.18+1.2.1.27|MetaCyc: PWY-5642|MetaCyc: PWY-6373|Reactome: R-HSA-70895 AM354_RS15345 b4382b55308248454fa675969fac9503 501 Gene3D G3DSA:3.40.309.10 265 463 4.8E-60 T 29-03-2018 AM354_RS15345 b4382b55308248454fa675969fac9503 501 Gene3D G3DSA:3.40.605.10 1 264 6.6E-83 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM354_RS15345 b4382b55308248454fa675969fac9503 501 SUPERFAMILY SSF53720 2 485 4.19E-143 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM354_RS25470 8057cae2d18b7f8ae653195d40dcc2cf 286 Pfam PF12833 Helix-turn-helix domain 190 265 1.8E-12 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS25470 8057cae2d18b7f8ae653195d40dcc2cf 286 SUPERFAMILY SSF46689 218 268 2.73E-11 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS25470 8057cae2d18b7f8ae653195d40dcc2cf 286 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 219 261 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM354_RS25470 8057cae2d18b7f8ae653195d40dcc2cf 286 Gene3D G3DSA:1.10.10.60 219 281 1.4E-11 T 29-03-2018 AM354_RS25470 8057cae2d18b7f8ae653195d40dcc2cf 286 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 249 265 2.2E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM354_RS25470 8057cae2d18b7f8ae653195d40dcc2cf 286 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 234 249 2.2E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM354_RS25470 8057cae2d18b7f8ae653195d40dcc2cf 286 Gene3D G3DSA:2.60.120.10 3 84 2.4E-4 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS25470 8057cae2d18b7f8ae653195d40dcc2cf 286 SMART SM00342 183 265 1.2E-18 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS05555 fa6554e22404206d31186db867f38266 401 Gene3D G3DSA:3.20.140.10 1 401 2.9E-107 T 29-03-2018 AM354_RS05555 fa6554e22404206d31186db867f38266 401 Hamap MF_00570 Nicotinate phosphoribosyltransferase [pncB]. 5 396 48.703 T 29-03-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 AM354_RS05555 fa6554e22404206d31186db867f38266 401 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 169 395 1.9E-80 T 29-03-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 AM354_RS05555 fa6554e22404206d31186db867f38266 401 TIGRFAM TIGR01514 NAPRTase: nicotinate phosphoribosyltransferase 8 395 4.5E-165 T 29-03-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 AM354_RS05555 fa6554e22404206d31186db867f38266 401 SUPERFAMILY SSF51690 120 393 5.3E-86 T 29-03-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 AM354_RS05555 fa6554e22404206d31186db867f38266 401 PIRSF PIRSF000484 1 396 4.0E-61 T 29-03-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 AM354_RS05555 fa6554e22404206d31186db867f38266 401 SUPERFAMILY SSF54675 2 137 3.53E-42 T 29-03-2018 AM354_RS13515 cda68cbde0c73e629b880ea411e515db 564 Gene3D G3DSA:3.40.720.10 246 543 1.8E-21 T 29-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 AM354_RS13515 cda68cbde0c73e629b880ea411e515db 564 Pfam PF08019 Domain of unknown function (DUF1705) 56 173 1.1E-18 T 29-03-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 AM354_RS13515 cda68cbde0c73e629b880ea411e515db 564 SUPERFAMILY SSF53649 250 543 8.04E-20 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AM354_RS13515 cda68cbde0c73e629b880ea411e515db 564 Pfam PF00884 Sulfatase 250 538 3.1E-44 T 29-03-2018 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 AM354_RS00550 515a2d86928601812f3df59069a9a332 288 SUPERFAMILY SSF53850 91 281 4.81E-22 T 29-03-2018 AM354_RS00550 515a2d86928601812f3df59069a9a332 288 Pfam PF03466 LysR substrate binding domain 90 256 2.2E-20 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS00550 515a2d86928601812f3df59069a9a332 288 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 65 2.1E-16 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS00550 515a2d86928601812f3df59069a9a332 288 Gene3D G3DSA:1.10.10.10 1 88 8.9E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS00550 515a2d86928601812f3df59069a9a332 288 Gene3D G3DSA:3.40.190.10 89 218 3.7E-15 T 29-03-2018 AM354_RS00550 515a2d86928601812f3df59069a9a332 288 SUPERFAMILY SSF46785 4 113 1.56E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS12590 00932729ad6b86c0fc30777e1d007ce5 438 SUPERFAMILY SSF118215 8 412 1.83E-125 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS12590 00932729ad6b86c0fc30777e1d007ce5 438 Pfam PF00375 Sodium:dicarboxylate symporter family 8 411 4.1E-119 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS12590 00932729ad6b86c0fc30777e1d007ce5 438 PRINTS PR00173 Glutamate-aspartate symporter signature 338 357 2.7E-53 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS12590 00932729ad6b86c0fc30777e1d007ce5 438 PRINTS PR00173 Glutamate-aspartate symporter signature 203 222 2.7E-53 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS12590 00932729ad6b86c0fc30777e1d007ce5 438 PRINTS PR00173 Glutamate-aspartate symporter signature 6 26 2.7E-53 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS12590 00932729ad6b86c0fc30777e1d007ce5 438 PRINTS PR00173 Glutamate-aspartate symporter signature 365 385 2.7E-53 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS12590 00932729ad6b86c0fc30777e1d007ce5 438 PRINTS PR00173 Glutamate-aspartate symporter signature 51 71 2.7E-53 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS12590 00932729ad6b86c0fc30777e1d007ce5 438 PRINTS PR00173 Glutamate-aspartate symporter signature 81 106 2.7E-53 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS12590 00932729ad6b86c0fc30777e1d007ce5 438 PRINTS PR00173 Glutamate-aspartate symporter signature 303 329 2.7E-53 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS12590 00932729ad6b86c0fc30777e1d007ce5 438 PRINTS PR00173 Glutamate-aspartate symporter signature 155 177 2.7E-53 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS12590 00932729ad6b86c0fc30777e1d007ce5 438 Hamap MF_02063 Proton/glutamate-aspartate symporter [gltP]. 1 428 46.072 T 29-03-2018 IPR034703 Proton/glutamate-aspartate symporter GltP GO:0006835|GO:0015293|GO:0016021 AM354_RS12590 00932729ad6b86c0fc30777e1d007ce5 438 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 306 329 - T 29-03-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site AM354_RS12590 00932729ad6b86c0fc30777e1d007ce5 438 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 43 58 - T 29-03-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site AM354_RS12590 00932729ad6b86c0fc30777e1d007ce5 438 Gene3D G3DSA:1.10.3860.10 2 418 7.0E-128 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS25980 83da505b42807e931574bc2122941b09 528 Pfam PF00563 EAL domain 275 501 8.2E-61 T 29-03-2018 IPR001633 EAL domain AM354_RS25980 83da505b42807e931574bc2122941b09 528 Gene3D G3DSA:3.20.20.450 262 520 2.0E-77 T 29-03-2018 IPR001633 EAL domain AM354_RS25980 83da505b42807e931574bc2122941b09 528 Pfam PF12792 CSS motif domain associated with EAL 46 232 3.1E-28 T 29-03-2018 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain AM354_RS25980 83da505b42807e931574bc2122941b09 528 SUPERFAMILY SSF141868 273 514 8.63E-74 T 29-03-2018 IPR001633 EAL domain AM354_RS25980 83da505b42807e931574bc2122941b09 528 SMART SM00052 265 506 3.4E-94 T 29-03-2018 IPR001633 EAL domain AM354_RS14450 8523d6fd64550b42a78617816045771f 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 13 30 7.2E-42 T 29-03-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AM354_RS14450 8523d6fd64550b42a78617816045771f 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 123 141 7.2E-42 T 29-03-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AM354_RS14450 8523d6fd64550b42a78617816045771f 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 73 93 7.2E-42 T 29-03-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AM354_RS14450 8523d6fd64550b42a78617816045771f 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 97 119 7.2E-42 T 29-03-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AM354_RS14450 8523d6fd64550b42a78617816045771f 156 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 6 146 4.0E-69 T 29-03-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AM354_RS14450 8523d6fd64550b42a78617816045771f 156 Hamap MF_00821 Protein-export protein SecB [secB]. 1 145 33.903 T 29-03-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AM354_RS14450 8523d6fd64550b42a78617816045771f 156 Gene3D G3DSA:3.10.420.10 1 153 9.9E-56 T 29-03-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AM354_RS14450 8523d6fd64550b42a78617816045771f 156 SUPERFAMILY SSF54611 3 141 2.01E-53 T 29-03-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AM354_RS14450 8523d6fd64550b42a78617816045771f 156 Pfam PF02556 Preprotein translocase subunit SecB 5 144 3.8E-58 T 29-03-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AM354_RS22405 8db5c722d6864fe83602c9bd2a931e06 561 SUPERFAMILY SSF52518 7 184 1.08E-46 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS22405 8db5c722d6864fe83602c9bd2a931e06 561 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 198 331 3.3E-28 T 29-03-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AM354_RS22405 8db5c722d6864fe83602c9bd2a931e06 561 Gene3D G3DSA:3.40.50.970 5 196 9.7E-45 T 29-03-2018 AM354_RS22405 8db5c722d6864fe83602c9bd2a931e06 561 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 432 451 - T 29-03-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 AM354_RS22405 8db5c722d6864fe83602c9bd2a931e06 561 Gene3D G3DSA:3.40.50.970 360 558 2.8E-37 T 29-03-2018 AM354_RS22405 8db5c722d6864fe83602c9bd2a931e06 561 SUPERFAMILY SSF52467 191 351 1.46E-36 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM354_RS22405 8db5c722d6864fe83602c9bd2a931e06 561 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 395 540 3.5E-39 T 29-03-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AM354_RS22405 8db5c722d6864fe83602c9bd2a931e06 561 Gene3D G3DSA:3.40.50.1220 197 359 4.2E-28 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM354_RS22405 8db5c722d6864fe83602c9bd2a931e06 561 TIGRFAM TIGR02418 acolac_catab: acetolactate synthase, catabolic 13 552 1.2E-256 T 29-03-2018 IPR012782 Acetolactate synthase, catabolic GO:0000287|GO:0003984|GO:0030976|GO:0034077 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 AM354_RS22405 8db5c722d6864fe83602c9bd2a931e06 561 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 13 180 3.8E-47 T 29-03-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AM354_RS22405 8db5c722d6864fe83602c9bd2a931e06 561 SUPERFAMILY SSF52518 372 555 2.36E-53 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS20795 6293eb24f9ffaa7ff1c799f444e26797 280 Pfam PF05929 Phage capsid scaffolding protein (GPO) serine peptidase 9 268 8.9E-39 T 29-03-2018 IPR009228 Capsid scaffolding protein GpO GO:0019069 AM354_RS20795 6293eb24f9ffaa7ff1c799f444e26797 280 Gene3D G3DSA:1.20.5.50 170 269 3.5E-8 T 29-03-2018 AM354_RS10320 78042d1bcd72ad2a9002bf369a1cf46a 476 Gene3D G3DSA:1.10.8.210 151 208 1.1E-20 T 29-03-2018 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM354_RS10320 78042d1bcd72ad2a9002bf369a1cf46a 476 PIRSF PIRSF036426 1 469 1.7E-203 T 29-03-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM354_RS10320 78042d1bcd72ad2a9002bf369a1cf46a 476 Gene3D G3DSA:3.30.160.110 121 148 1.5E-16 T 29-03-2018 AM354_RS10320 78042d1bcd72ad2a9002bf369a1cf46a 476 Gene3D G3DSA:3.30.950.10 344 471 1.1E-37 T 29-03-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM354_RS10320 78042d1bcd72ad2a9002bf369a1cf46a 476 Pfam PF14824 Sirohaem biosynthesis protein central 119 145 5.5E-8 T 29-03-2018 IPR028281 Siroheme synthase, central domain KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM354_RS10320 78042d1bcd72ad2a9002bf369a1cf46a 476 Pfam PF13241 Putative NAD(P)-binding 6 115 4.1E-27 T 29-03-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM354_RS10320 78042d1bcd72ad2a9002bf369a1cf46a 476 SUPERFAMILY SSF75615 114 208 1.96E-27 T 29-03-2018 AM354_RS10320 78042d1bcd72ad2a9002bf369a1cf46a 476 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 207 4.1E-80 T 29-03-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM354_RS10320 78042d1bcd72ad2a9002bf369a1cf46a 476 Pfam PF10414 Sirohaem synthase dimerisation region 150 207 3.1E-21 T 29-03-2018 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM354_RS10320 78042d1bcd72ad2a9002bf369a1cf46a 476 SUPERFAMILY SSF51735 2 113 2.65E-23 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS10320 78042d1bcd72ad2a9002bf369a1cf46a 476 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 299 332 - T 29-03-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM354_RS10320 78042d1bcd72ad2a9002bf369a1cf46a 476 SUPERFAMILY SSF53790 218 460 3.93E-80 T 29-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM354_RS10320 78042d1bcd72ad2a9002bf369a1cf46a 476 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 221 430 7.9E-50 T 29-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM354_RS10320 78042d1bcd72ad2a9002bf369a1cf46a 476 Gene3D G3DSA:3.40.1010.10 218 343 1.1E-35 T 29-03-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM354_RS10320 78042d1bcd72ad2a9002bf369a1cf46a 476 Hamap MF_01646 Siroheme synthase [cysG]. 1 461 52.432 T 29-03-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM354_RS10320 78042d1bcd72ad2a9002bf369a1cf46a 476 Gene3D G3DSA:3.40.50.720 3 120 3.4E-20 T 29-03-2018 AM354_RS10320 78042d1bcd72ad2a9002bf369a1cf46a 476 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 219 452 1.4E-91 T 29-03-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0006779|GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM354_RS10320 78042d1bcd72ad2a9002bf369a1cf46a 476 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 224 238 - T 29-03-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM354_RS23225 fdc3662834b271dee3d7cbfc627f6c8f 2885 Gene3D G3DSA:2.70.98.40 1584 1859 2.9E-84 T 29-03-2018 IPR005196 Glycoside hydrolase, family 65, N-terminal GO:0003824|GO:0005975 AM354_RS23225 fdc3662834b271dee3d7cbfc627f6c8f 2885 Gene3D G3DSA:2.70.98.40 2090 2367 1.5E-87 T 29-03-2018 IPR005196 Glycoside hydrolase, family 65, N-terminal GO:0003824|GO:0005975 AM354_RS23225 fdc3662834b271dee3d7cbfc627f6c8f 2885 Gene3D G3DSA:3.90.550.10 376 800 5.2E-5 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS23225 fdc3662834b271dee3d7cbfc627f6c8f 2885 SUPERFAMILY SSF74650 1587 1847 1.44E-77 T 29-03-2018 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 AM354_RS23225 fdc3662834b271dee3d7cbfc627f6c8f 2885 Pfam PF10091 Putative glucoamylase 1352 1528 1.5E-12 T 29-03-2018 IPR019282 Domain of unknown function DUF2329 AM354_RS23225 fdc3662834b271dee3d7cbfc627f6c8f 2885 SMART SM01068 1573 1634 2.1E-23 T 29-03-2018 IPR009342 Putative carbohydrate binding domain AM354_RS23225 fdc3662834b271dee3d7cbfc627f6c8f 2885 SMART SM01068 2089 2154 2.6E-31 T 29-03-2018 IPR009342 Putative carbohydrate binding domain AM354_RS23225 fdc3662834b271dee3d7cbfc627f6c8f 2885 SUPERFAMILY SSF48208 2361 2881 1.3E-94 T 29-03-2018 IPR008928 Six-hairpin glycosidase-like GO:0003824 AM354_RS23225 fdc3662834b271dee3d7cbfc627f6c8f 2885 Gene3D G3DSA:2.60.420.10 2801 2885 7.4E-19 T 29-03-2018 AM354_RS23225 fdc3662834b271dee3d7cbfc627f6c8f 2885 Pfam PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain 2384 2810 6.1E-114 T 29-03-2018 IPR033432 Glycosyl hydrolase 36, catalytic domain AM354_RS23225 fdc3662834b271dee3d7cbfc627f6c8f 2885 SUPERFAMILY SSF74650 2089 2355 9.73E-81 T 29-03-2018 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 AM354_RS23225 fdc3662834b271dee3d7cbfc627f6c8f 2885 Pfam PF06165 Glycosyltransferase family 36 2112 2353 4.9E-76 T 29-03-2018 IPR010383 Glycosyl hydrolase 94 AM354_RS23225 fdc3662834b271dee3d7cbfc627f6c8f 2885 Pfam PF06165 Glycosyltransferase family 36 1595 1845 1.2E-77 T 29-03-2018 IPR010383 Glycosyl hydrolase 94 AM354_RS23225 fdc3662834b271dee3d7cbfc627f6c8f 2885 Gene3D G3DSA:1.50.10.10 2399 2774 7.4E-80 T 29-03-2018 AM354_RS10290 a8b6c8abf4297dc363dc791cf259ae57 255 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 64 248 1.6E-22 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS10290 a8b6c8abf4297dc363dc791cf259ae57 255 SUPERFAMILY SSF161098 14 234 3.14E-41 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS10290 a8b6c8abf4297dc363dc791cf259ae57 255 Gene3D G3DSA:1.10.3720.10 2 254 1.7E-43 T 29-03-2018 AM354_RS10290 a8b6c8abf4297dc363dc791cf259ae57 255 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 14 93 4.8E-12 T 29-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 AM354_RS21850 0864c603a84b9d8fd77399819099cf71 450 Pfam PF00012 Hsp70 protein 330 422 4.2E-6 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM354_RS21850 0864c603a84b9d8fd77399819099cf71 450 Pfam PF00012 Hsp70 protein 3 228 8.0E-14 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM354_RS21850 0864c603a84b9d8fd77399819099cf71 450 Gene3D G3DSA:3.30.420.40 1 216 1.6E-33 T 29-03-2018 AM354_RS21850 0864c603a84b9d8fd77399819099cf71 450 SUPERFAMILY SSF53067 85 204 3.88E-27 T 29-03-2018 AM354_RS21850 0864c603a84b9d8fd77399819099cf71 450 SUPERFAMILY SSF53067 1 44 3.88E-27 T 29-03-2018 AM354_RS21850 0864c603a84b9d8fd77399819099cf71 450 Gene3D G3DSA:3.30.420.40 217 429 1.5E-29 T 29-03-2018 AM354_RS21850 0864c603a84b9d8fd77399819099cf71 450 SUPERFAMILY SSF53067 207 276 3.96E-30 T 29-03-2018 AM354_RS21850 0864c603a84b9d8fd77399819099cf71 450 SUPERFAMILY SSF53067 328 447 3.96E-30 T 29-03-2018 AM354_RS21850 0864c603a84b9d8fd77399819099cf71 450 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 213 226 - T 29-03-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AM354_RS06300 12d57e22e546ac60d83f16e344840d1f 194 SUPERFAMILY SSF53271 7 59 4.12E-16 T 29-03-2018 IPR029057 Phosphoribosyltransferase-like AM354_RS06300 12d57e22e546ac60d83f16e344840d1f 194 SUPERFAMILY SSF53271 98 178 4.12E-16 T 29-03-2018 IPR029057 Phosphoribosyltransferase-like AM354_RS06300 12d57e22e546ac60d83f16e344840d1f 194 Gene3D G3DSA:3.40.50.2020 1 193 1.7E-16 T 29-03-2018 AM354_RS06300 12d57e22e546ac60d83f16e344840d1f 194 Pfam PF00156 Phosphoribosyl transferase domain 13 149 7.6E-16 T 29-03-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AM354_RS06515 572676088d0f165f5d8a0b8f05a29c92 412 Gene3D G3DSA:2.170.190.11 65 144 4.5E-29 T 29-03-2018 AM354_RS06515 572676088d0f165f5d8a0b8f05a29c92 412 Pfam PF03453 MoeA N-terminal region (domain I and II) 10 170 9.0E-46 T 29-03-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AM354_RS06515 572676088d0f165f5d8a0b8f05a29c92 412 Pfam PF03454 MoeA C-terminal region (domain IV) 334 406 1.1E-17 T 29-03-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AM354_RS06515 572676088d0f165f5d8a0b8f05a29c92 412 SUPERFAMILY SSF63867 330 410 1.83E-23 T 29-03-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AM354_RS06515 572676088d0f165f5d8a0b8f05a29c92 412 SUPERFAMILY SSF53218 180 326 1.57E-44 T 29-03-2018 IPR001453 MoaB/Mog domain AM354_RS06515 572676088d0f165f5d8a0b8f05a29c92 412 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 179 316 2.2E-34 T 29-03-2018 IPR001453 MoaB/Mog domain AM354_RS06515 572676088d0f165f5d8a0b8f05a29c92 412 Gene3D G3DSA:3.90.105.10 29 64 2.0E-11 T 29-03-2018 AM354_RS06515 572676088d0f165f5d8a0b8f05a29c92 412 Gene3D G3DSA:2.40.340.10 332 404 7.2E-20 T 29-03-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AM354_RS06515 572676088d0f165f5d8a0b8f05a29c92 412 Pfam PF00994 Probable molybdopterin binding domain 183 319 2.4E-26 T 29-03-2018 IPR001453 MoaB/Mog domain AM354_RS06515 572676088d0f165f5d8a0b8f05a29c92 412 Gene3D G3DSA:3.40.980.10 153 327 1.4E-56 T 29-03-2018 IPR001453 MoaB/Mog domain AM354_RS06515 572676088d0f165f5d8a0b8f05a29c92 412 SMART SM00852 183 320 4.7E-45 T 29-03-2018 IPR001453 MoaB/Mog domain AM354_RS06515 572676088d0f165f5d8a0b8f05a29c92 412 SUPERFAMILY SSF63882 6 179 2.62E-57 T 29-03-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AM354_RS06515 572676088d0f165f5d8a0b8f05a29c92 412 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 256 289 - T 29-03-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 AM354_RS08115 8622b067c18078e53265d0457742e742 562 Hamap MF_00275 Potassium-transporting ATPase potassium-binding subunit [kdpA]. 2 558 35.294 T 29-03-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 AM354_RS08115 8622b067c18078e53265d0457742e742 562 TIGRFAM TIGR00680 kdpA: K+-transporting ATPase, A subunit 1 557 6.2E-264 T 29-03-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 AM354_RS08115 8622b067c18078e53265d0457742e742 562 Pfam PF03814 Potassium-transporting ATPase A subunit 12 556 2.0E-239 T 29-03-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 AM354_RS08115 8622b067c18078e53265d0457742e742 562 PIRSF PIRSF001294 1 560 4.5E-236 T 29-03-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 AM354_RS19065 0981f64e7e5712ffdad8c8605231803e 303 Hamap MF_01428 Glutamyl-Q tRNA(Asp) synthetase [gluQ]. 6 290 41.699 T 29-03-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0006400|GO:0016876 AM354_RS19065 0981f64e7e5712ffdad8c8605231803e 303 TIGRFAM TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase 6 264 6.0E-111 T 29-03-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0006400|GO:0016876 AM354_RS19065 0981f64e7e5712ffdad8c8605231803e 303 SUPERFAMILY SSF52374 6 285 2.16E-88 T 29-03-2018 AM354_RS19065 0981f64e7e5712ffdad8c8605231803e 303 Gene3D G3DSA:3.40.50.620 121 222 1.4E-24 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS19065 0981f64e7e5712ffdad8c8605231803e 303 Gene3D G3DSA:3.40.50.620 1 120 3.3E-34 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS19065 0981f64e7e5712ffdad8c8605231803e 303 PRINTS PR00987 Glutamyl-tRNA synthetase signature 23 34 2.1E-14 T 29-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 AM354_RS19065 0981f64e7e5712ffdad8c8605231803e 303 PRINTS PR00987 Glutamyl-tRNA synthetase signature 9 21 2.1E-14 T 29-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 AM354_RS19065 0981f64e7e5712ffdad8c8605231803e 303 PRINTS PR00987 Glutamyl-tRNA synthetase signature 186 194 2.1E-14 T 29-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 AM354_RS19065 0981f64e7e5712ffdad8c8605231803e 303 PRINTS PR00987 Glutamyl-tRNA synthetase signature 38 51 2.1E-14 T 29-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 AM354_RS19065 0981f64e7e5712ffdad8c8605231803e 303 PRINTS PR00987 Glutamyl-tRNA synthetase signature 170 180 2.1E-14 T 29-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 AM354_RS19065 0981f64e7e5712ffdad8c8605231803e 303 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 9 234 1.5E-44 T 29-03-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 AM354_RS12535 3153037cbff9b02dc79a5bf46b12c6b0 418 Pfam PF05977 Transmembrane secretion effector 17 403 1.5E-18 T 29-03-2018 IPR010290 Transmembrane secretion effector AM354_RS12535 3153037cbff9b02dc79a5bf46b12c6b0 418 SUPERFAMILY SSF103473 17 408 1.96E-40 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS12535 3153037cbff9b02dc79a5bf46b12c6b0 418 Gene3D G3DSA:1.20.1250.20 10 212 1.1E-23 T 29-03-2018 AM354_RS12535 3153037cbff9b02dc79a5bf46b12c6b0 418 Gene3D G3DSA:1.20.1250.20 218 416 2.1E-13 T 29-03-2018 AM354_RS01415 4ec5a462cc58b7f01ce5bce8a46f8589 241 SUPERFAMILY SSF52172 1 184 4.21E-31 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS01415 4ec5a462cc58b7f01ce5bce8a46f8589 241 Gene3D G3DSA:1.10.10.10 129 238 1.0E-27 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS01415 4ec5a462cc58b7f01ce5bce8a46f8589 241 SMART SM00862 155 231 9.6E-19 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS01415 4ec5a462cc58b7f01ce5bce8a46f8589 241 Gene3D G3DSA:3.40.50.2300 1 128 2.0E-26 T 29-03-2018 AM354_RS01415 4ec5a462cc58b7f01ce5bce8a46f8589 241 SMART SM00448 2 112 2.0E-30 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS01415 4ec5a462cc58b7f01ce5bce8a46f8589 241 Pfam PF00072 Response regulator receiver domain 4 112 7.2E-19 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS01415 4ec5a462cc58b7f01ce5bce8a46f8589 241 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 231 5.3E-20 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS19465 ccb1a467a1cb9b6dc33ec95215b5ca0e 128 Pfam PF01597 Glycine cleavage H-protein 8 126 1.5E-44 T 29-03-2018 IPR033753 Glycine cleavage system H-protein/Simiate AM354_RS19465 ccb1a467a1cb9b6dc33ec95215b5ca0e 128 SUPERFAMILY SSF51230 4 127 4.79E-43 T 29-03-2018 IPR011053 Single hybrid motif AM354_RS19465 ccb1a467a1cb9b6dc33ec95215b5ca0e 128 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 5 127 40.688 T 29-03-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 AM354_RS19465 ccb1a467a1cb9b6dc33ec95215b5ca0e 128 Gene3D G3DSA:2.40.50.100 6 128 7.0E-45 T 29-03-2018 AM354_RS19465 ccb1a467a1cb9b6dc33ec95215b5ca0e 128 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 3 126 1.3E-51 T 29-03-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 AM354_RS19465 ccb1a467a1cb9b6dc33ec95215b5ca0e 128 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 49 78 - T 29-03-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AM354_RS02135 37f4b102d04c6c52ad5df68308f21bf0 263 Gene3D G3DSA:1.10.10.60 223 263 4.6E-7 T 29-03-2018 AM354_RS02135 37f4b102d04c6c52ad5df68308f21bf0 263 Pfam PF12833 Helix-turn-helix domain 186 261 3.2E-18 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS02135 37f4b102d04c6c52ad5df68308f21bf0 263 Gene3D G3DSA:1.10.10.60 172 219 2.8E-11 T 29-03-2018 AM354_RS02135 37f4b102d04c6c52ad5df68308f21bf0 263 SUPERFAMILY SSF46689 217 261 4.48E-7 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS02135 37f4b102d04c6c52ad5df68308f21bf0 263 Pfam PF02311 AraC-like ligand binding domain 31 143 5.3E-7 T 29-03-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AM354_RS02135 37f4b102d04c6c52ad5df68308f21bf0 263 SUPERFAMILY SSF51182 31 189 1.71E-14 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS02135 37f4b102d04c6c52ad5df68308f21bf0 263 Gene3D G3DSA:2.60.120.280 9 171 2.5E-6 T 29-03-2018 AM354_RS02135 37f4b102d04c6c52ad5df68308f21bf0 263 SMART SM00342 180 262 2.1E-19 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS21740 06c1361c02beaaf0c3df708420cb7624 257 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 29-03-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AM354_RS21740 06c1361c02beaaf0c3df708420cb7624 257 SMART SM01134 72 233 1.3E-72 T 29-03-2018 AM354_RS21740 06c1361c02beaaf0c3df708420cb7624 257 SUPERFAMILY SSF100950 73 233 5.3E-35 T 29-03-2018 AM354_RS21740 06c1361c02beaaf0c3df708420cb7624 257 SUPERFAMILY SSF46785 4 59 1.8E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS21740 06c1361c02beaaf0c3df708420cb7624 257 SMART SM00420 6 58 8.9E-18 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS21740 06c1361c02beaaf0c3df708420cb7624 257 Pfam PF00455 DeoR C terminal sensor domain 74 232 5.9E-52 T 29-03-2018 IPR014036 DeoR C-terminal sensor domain AM354_RS21740 06c1361c02beaaf0c3df708420cb7624 257 Pfam PF08220 DeoR-like helix-turn-helix domain 6 58 4.6E-17 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS21740 06c1361c02beaaf0c3df708420cb7624 257 Gene3D G3DSA:3.40.50.1360 72 238 3.2E-39 T 29-03-2018 AM354_RS21740 06c1361c02beaaf0c3df708420cb7624 257 Gene3D G3DSA:1.10.10.10 1 58 2.3E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS05205 112e69aab9d6d7563a154b19545a784c 142 Gene3D G3DSA:3.40.50.620 1 142 7.7E-28 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS05205 112e69aab9d6d7563a154b19545a784c 142 Pfam PF00582 Universal stress protein family 1 142 1.6E-23 T 29-03-2018 IPR006016 UspA GO:0006950 AM354_RS05205 112e69aab9d6d7563a154b19545a784c 142 PRINTS PR01438 Universal stress protein signature 120 142 6.2E-12 T 29-03-2018 IPR006015 Universal stress protein A AM354_RS05205 112e69aab9d6d7563a154b19545a784c 142 PRINTS PR01438 Universal stress protein signature 2 20 6.2E-12 T 29-03-2018 IPR006015 Universal stress protein A AM354_RS05205 112e69aab9d6d7563a154b19545a784c 142 PRINTS PR01438 Universal stress protein signature 103 115 6.2E-12 T 29-03-2018 IPR006015 Universal stress protein A AM354_RS05205 112e69aab9d6d7563a154b19545a784c 142 SUPERFAMILY SSF52402 2 142 1.17E-27 T 29-03-2018 AM354_RS05205 112e69aab9d6d7563a154b19545a784c 142 PIRSF PIRSF006276 1 142 1.1E-17 T 29-03-2018 IPR006015 Universal stress protein A AM354_RS08180 c74285182e69bcb51e8ddf528e547af8 885 SUPERFAMILY SSF81296 782 885 8.82E-40 T 29-03-2018 IPR014756 Immunoglobulin E-set AM354_RS08180 c74285182e69bcb51e8ddf528e547af8 885 Gene3D G3DSA:2.60.40.290 28 169 1.4E-34 T 29-03-2018 AM354_RS08180 c74285182e69bcb51e8ddf528e547af8 885 Pfam PF03173 Putative carbohydrate binding domain 37 195 1.2E-62 T 29-03-2018 IPR004866 Chitobiase/beta-hexosaminidases, N-terminal domain KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822 AM354_RS08180 c74285182e69bcb51e8ddf528e547af8 885 Gene3D G3DSA:3.30.379.10 209 335 1.2E-15 T 29-03-2018 AM354_RS08180 c74285182e69bcb51e8ddf528e547af8 885 Pfam PF03174 Chitobiase/beta-hexosaminidase C-terminal domain 806 881 1.3E-32 T 29-03-2018 IPR004867 Chitobiase C-terminal domain KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822 AM354_RS08180 c74285182e69bcb51e8ddf528e547af8 885 PRINTS PR00738 Glycosyl hydrolase family 20 signature 502 520 1.1E-45 T 29-03-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 AM354_RS08180 c74285182e69bcb51e8ddf528e547af8 885 PRINTS PR00738 Glycosyl hydrolase family 20 signature 332 349 1.1E-45 T 29-03-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 AM354_RS08180 c74285182e69bcb51e8ddf528e547af8 885 PRINTS PR00738 Glycosyl hydrolase family 20 signature 729 745 1.1E-45 T 29-03-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 AM354_RS08180 c74285182e69bcb51e8ddf528e547af8 885 PRINTS PR00738 Glycosyl hydrolase family 20 signature 747 764 1.1E-45 T 29-03-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 AM354_RS08180 c74285182e69bcb51e8ddf528e547af8 885 PRINTS PR00738 Glycosyl hydrolase family 20 signature 435 452 1.1E-45 T 29-03-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 AM354_RS08180 c74285182e69bcb51e8ddf528e547af8 885 PRINTS PR00738 Glycosyl hydrolase family 20 signature 361 382 1.1E-45 T 29-03-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 AM354_RS08180 c74285182e69bcb51e8ddf528e547af8 885 PRINTS PR00738 Glycosyl hydrolase family 20 signature 529 542 1.1E-45 T 29-03-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 AM354_RS08180 c74285182e69bcb51e8ddf528e547af8 885 PRINTS PR00738 Glycosyl hydrolase family 20 signature 298 318 1.1E-45 T 29-03-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 AM354_RS08180 c74285182e69bcb51e8ddf528e547af8 885 Gene3D G3DSA:3.20.20.80 336 819 1.8E-121 T 29-03-2018 AM354_RS08180 c74285182e69bcb51e8ddf528e547af8 885 SUPERFAMILY SSF49384 29 199 7.32E-66 T 29-03-2018 IPR008965 Carbohydrate-binding domain GO:0030246 AM354_RS08180 c74285182e69bcb51e8ddf528e547af8 885 Pfam PF02838 Glycosyl hydrolase family 20, domain 2 216 334 7.8E-15 T 29-03-2018 IPR015882 Beta-hexosaminidase, bacteial type, N-terminal KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822 AM354_RS08180 c74285182e69bcb51e8ddf528e547af8 885 SUPERFAMILY SSF55545 205 337 8.67E-27 T 29-03-2018 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 AM354_RS08180 c74285182e69bcb51e8ddf528e547af8 885 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 338 765 6.9E-114 T 29-03-2018 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822 AM354_RS08180 c74285182e69bcb51e8ddf528e547af8 885 SUPERFAMILY SSF51445 338 774 4.48E-144 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily AM354_RS08180 c74285182e69bcb51e8ddf528e547af8 885 SMART SM01081 36 197 4.6E-92 T 29-03-2018 IPR004866 Chitobiase/beta-hexosaminidases, N-terminal domain KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822 AM354_RS08180 c74285182e69bcb51e8ddf528e547af8 885 Gene3D G3DSA:2.60.40.10 820 885 8.0E-11 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS12715 eefad4474178b212c7ea3769e36f293c 246 Gene3D G3DSA:3.40.50.2300 112 217 2.7E-11 T 29-03-2018 AM354_RS12715 eefad4474178b212c7ea3769e36f293c 246 SUPERFAMILY SSF52172 122 210 1.74E-8 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS12715 eefad4474178b212c7ea3769e36f293c 246 Pfam PF00072 Response regulator receiver domain 126 208 2.0E-5 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS12715 eefad4474178b212c7ea3769e36f293c 246 Pfam PF08667 BetR domain 1 54 2.5E-8 T 29-03-2018 IPR013975 Transcription regulator BetR, N-terminal AM354_RS22950 ce44903d7668546807878aae318c8993 336 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 6 119 9.2E-25 T 29-03-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AM354_RS22950 ce44903d7668546807878aae318c8993 336 SUPERFAMILY SSF51735 5 158 1.45E-44 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS22950 ce44903d7668546807878aae318c8993 336 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 141 316 1.2E-38 T 29-03-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AM354_RS22950 ce44903d7668546807878aae318c8993 336 Gene3D G3DSA:3.30.360.10 144 313 2.8E-48 T 29-03-2018 AM354_RS22950 ce44903d7668546807878aae318c8993 336 SMART SM00859 6 121 4.5E-33 T 29-03-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AM354_RS22950 ce44903d7668546807878aae318c8993 336 Gene3D G3DSA:3.40.50.720 1 143 3.8E-25 T 29-03-2018 AM354_RS22950 ce44903d7668546807878aae318c8993 336 PIRSF PIRSF000148 4 336 4.0E-98 T 29-03-2018 AM354_RS22950 ce44903d7668546807878aae318c8993 336 SUPERFAMILY SSF55347 132 318 3.13E-53 T 29-03-2018 AM354_RS20645 f6ce7b5c352d8ddf5053e55c6bc185b6 238 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 77 5.5E-18 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS20645 f6ce7b5c352d8ddf5053e55c6bc185b6 238 Pfam PF07702 UTRA domain 103 230 2.4E-20 T 29-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AM354_RS20645 f6ce7b5c352d8ddf5053e55c6bc185b6 238 SUPERFAMILY SSF64288 65 235 4.24E-26 T 29-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AM354_RS20645 f6ce7b5c352d8ddf5053e55c6bc185b6 238 SUPERFAMILY SSF46785 11 81 9.9E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS20645 f6ce7b5c352d8ddf5053e55c6bc185b6 238 SMART SM00345 18 77 2.2E-16 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS20645 f6ce7b5c352d8ddf5053e55c6bc185b6 238 Gene3D G3DSA:1.10.10.10 3 79 1.3E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS20645 f6ce7b5c352d8ddf5053e55c6bc185b6 238 SMART SM00866 96 231 4.0E-13 T 29-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AM354_RS20645 f6ce7b5c352d8ddf5053e55c6bc185b6 238 Gene3D G3DSA:3.40.1410.10 83 238 4.6E-21 T 29-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AM354_RS20645 f6ce7b5c352d8ddf5053e55c6bc185b6 238 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 51 67 9.8E-9 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS20645 f6ce7b5c352d8ddf5053e55c6bc185b6 238 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 51 9.8E-9 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS15390 933ec0dc5d528d426031308ca968d2a1 171 SUPERFAMILY SSF55729 4 163 1.28E-37 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS15390 933ec0dc5d528d426031308ca968d2a1 171 Gene3D G3DSA:3.40.630.30 2 171 4.6E-35 T 29-03-2018 AM354_RS15390 933ec0dc5d528d426031308ca968d2a1 171 Pfam PF00583 Acetyltransferase (GNAT) family 39 137 3.4E-19 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS14460 16b0ced106ea21bfbae72f9df3b05df4 273 Gene3D G3DSA:1.10.3130.10 1 134 3.6E-37 T 29-03-2018 AM354_RS14460 16b0ced106ea21bfbae72f9df3b05df4 273 PIRSF PIRSF000441 75 265 3.1E-59 T 29-03-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274 AM354_RS14460 16b0ced106ea21bfbae72f9df3b05df4 273 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 83 242 1.6E-73 T 29-03-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274 AM354_RS14460 16b0ced106ea21bfbae72f9df3b05df4 273 SMART SM00971 9 113 3.6E-59 T 29-03-2018 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274 AM354_RS14460 16b0ced106ea21bfbae72f9df3b05df4 273 Pfam PF06426 Serine acetyltransferase, N-terminal 9 113 4.1E-37 T 29-03-2018 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274 AM354_RS14460 16b0ced106ea21bfbae72f9df3b05df4 273 SUPERFAMILY SSF51161 8 260 3.47E-66 T 29-03-2018 IPR011004 Trimeric LpxA-like AM354_RS14460 16b0ced106ea21bfbae72f9df3b05df4 273 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 202 230 - T 29-03-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AM354_RS14460 16b0ced106ea21bfbae72f9df3b05df4 273 Gene3D G3DSA:2.160.10.10 135 264 1.2E-28 T 29-03-2018 AM354_RS14460 16b0ced106ea21bfbae72f9df3b05df4 273 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 193 226 2.1E-9 T 29-03-2018 IPR001451 Hexapeptide repeat AM354_RS01440 9f6c84b567f3b2362ee607e862d2115e 463 PIRSF PIRSF006060 1 455 1.7E-50 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM354_RS01440 9f6c84b567f3b2362ee607e862d2115e 463 Pfam PF13520 Amino acid permease 5 408 8.6E-73 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM354_RS01440 9f6c84b567f3b2362ee607e862d2115e 463 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 3 462 1.3E-170 T 29-03-2018 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 AM354_RS16390 2d56afdab5942d69358d86f87fdbe14a 296 SUPERFAMILY SSF161098 8 296 1.7E-69 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS16390 2d56afdab5942d69358d86f87fdbe14a 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 106 286 1.1E-15 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS16390 2d56afdab5942d69358d86f87fdbe14a 296 Gene3D G3DSA:1.10.3720.10 1 283 7.3E-44 T 29-03-2018 AM354_RS08675 6e372dc8699cb7298a94674eb65a3c7f 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 1.3E-19 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS08675 6e372dc8699cb7298a94674eb65a3c7f 304 SUPERFAMILY SSF46785 3 88 4.18E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS08675 6e372dc8699cb7298a94674eb65a3c7f 304 Gene3D G3DSA:1.10.10.10 1 87 6.0E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS08675 6e372dc8699cb7298a94674eb65a3c7f 304 SUPERFAMILY SSF53850 107 292 2.53E-23 T 29-03-2018 AM354_RS08675 6e372dc8699cb7298a94674eb65a3c7f 304 Pfam PF03466 LysR substrate binding domain 92 291 8.0E-21 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS08675 6e372dc8699cb7298a94674eb65a3c7f 304 Gene3D G3DSA:3.40.190.10 90 179 5.1E-8 T 29-03-2018 AM354_RS08675 6e372dc8699cb7298a94674eb65a3c7f 304 Gene3D G3DSA:3.40.190.10 180 258 1.1E-8 T 29-03-2018 AM354_RS08675 6e372dc8699cb7298a94674eb65a3c7f 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 7.1E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS08675 6e372dc8699cb7298a94674eb65a3c7f 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 7.1E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS08675 6e372dc8699cb7298a94674eb65a3c7f 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 7.1E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS20330 77359b929166e076846d9b0b46fb4f3e 572 Pfam PF04073 Aminoacyl-tRNA editing domain 257 377 8.5E-26 T 29-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AM354_RS20330 77359b929166e076846d9b0b46fb4f3e 572 Gene3D G3DSA:3.30.930.10 396 458 4.1E-10 T 29-03-2018 AM354_RS20330 77359b929166e076846d9b0b46fb4f3e 572 Gene3D G3DSA:3.30.930.10 10 217 9.9E-59 T 29-03-2018 AM354_RS20330 77359b929166e076846d9b0b46fb4f3e 572 Pfam PF03129 Anticodon binding domain 475 567 8.0E-20 T 29-03-2018 IPR004154 Anticodon-binding AM354_RS20330 77359b929166e076846d9b0b46fb4f3e 572 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 566 1.2E-271 T 29-03-2018 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AM354_RS20330 77359b929166e076846d9b0b46fb4f3e 572 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 459 3.4E-49 T 29-03-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS20330 77359b929166e076846d9b0b46fb4f3e 572 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 571 42.934 T 29-03-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AM354_RS20330 77359b929166e076846d9b0b46fb4f3e 572 PIRSF PIRSF001535 1 572 4.0E-276 T 29-03-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AM354_RS20330 77359b929166e076846d9b0b46fb4f3e 572 Gene3D G3DSA:3.90.960.10 241 389 5.2E-35 T 29-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AM354_RS20330 77359b929166e076846d9b0b46fb4f3e 572 SUPERFAMILY SSF55826 218 390 1.57E-31 T 29-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AM354_RS20330 77359b929166e076846d9b0b46fb4f3e 572 SUPERFAMILY SSF52954 463 570 8.31E-33 T 29-03-2018 IPR004154 Anticodon-binding AM354_RS20330 77359b929166e076846d9b0b46fb4f3e 572 Gene3D G3DSA:3.40.50.800 459 572 2.3E-31 T 29-03-2018 IPR004154 Anticodon-binding AM354_RS20330 77359b929166e076846d9b0b46fb4f3e 572 SUPERFAMILY SSF55681 407 478 7.56E-109 T 29-03-2018 AM354_RS20330 77359b929166e076846d9b0b46fb4f3e 572 SUPERFAMILY SSF55681 10 237 7.56E-109 T 29-03-2018 AM354_RS20330 77359b929166e076846d9b0b46fb4f3e 572 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 3.2E-19 T 29-03-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 AM354_RS20330 77359b929166e076846d9b0b46fb4f3e 572 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 3.2E-19 T 29-03-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 AM354_RS20330 77359b929166e076846d9b0b46fb4f3e 572 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 3.2E-19 T 29-03-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 AM354_RS20330 77359b929166e076846d9b0b46fb4f3e 572 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 3.2E-19 T 29-03-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 AM354_RS05930 3ed4d46d9dc5696bed417f1e516c3eef 369 Gene3D G3DSA:3.40.190.10 196 335 2.3E-21 T 29-03-2018 AM354_RS05930 3ed4d46d9dc5696bed417f1e516c3eef 369 PIRSF PIRSF019574 1 369 6.1E-141 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM354_RS05930 3ed4d46d9dc5696bed417f1e516c3eef 369 SUPERFAMILY SSF53850 28 368 9.06E-106 T 29-03-2018 AM354_RS05930 3ed4d46d9dc5696bed417f1e516c3eef 369 Gene3D G3DSA:3.40.190.10 29 195 1.8E-32 T 29-03-2018 AM354_RS05930 3ed4d46d9dc5696bed417f1e516c3eef 369 Pfam PF13416 Bacterial extracellular solute-binding protein 45 334 2.0E-37 T 29-03-2018 AM354_RS05930 3ed4d46d9dc5696bed417f1e516c3eef 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 34 50 2.6E-71 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM354_RS05930 3ed4d46d9dc5696bed417f1e516c3eef 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 218 237 2.6E-71 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM354_RS05930 3ed4d46d9dc5696bed417f1e516c3eef 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 157 171 2.6E-71 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM354_RS05930 3ed4d46d9dc5696bed417f1e516c3eef 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 180 199 2.6E-71 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM354_RS05930 3ed4d46d9dc5696bed417f1e516c3eef 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 268 287 2.6E-71 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM354_RS05930 3ed4d46d9dc5696bed417f1e516c3eef 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 313 339 2.6E-71 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM354_RS05930 3ed4d46d9dc5696bed417f1e516c3eef 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 126 142 2.6E-71 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM354_RS05930 3ed4d46d9dc5696bed417f1e516c3eef 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 50 71 2.6E-71 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM354_RS05930 3ed4d46d9dc5696bed417f1e516c3eef 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 77 91 2.6E-71 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM354_RS05930 3ed4d46d9dc5696bed417f1e516c3eef 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 93 106 2.6E-71 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM354_RS10340 b0117e0247ff926857d68575d5719bb2 600 PRINTS PR00369 Flavodoxin signature 169 188 2.6E-14 T 29-03-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 AM354_RS10340 b0117e0247ff926857d68575d5719bb2 600 PRINTS PR00369 Flavodoxin signature 145 155 2.6E-14 T 29-03-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 AM354_RS10340 b0117e0247ff926857d68575d5719bb2 600 PRINTS PR00369 Flavodoxin signature 113 124 2.6E-14 T 29-03-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 AM354_RS10340 b0117e0247ff926857d68575d5719bb2 600 PRINTS PR00369 Flavodoxin signature 65 78 2.6E-14 T 29-03-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 AM354_RS10340 b0117e0247ff926857d68575d5719bb2 600 Gene3D G3DSA:2.40.30.10 226 439 3.3E-48 T 29-03-2018 AM354_RS10340 b0117e0247ff926857d68575d5719bb2 600 Gene3D G3DSA:3.40.50.360 51 216 5.2E-37 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS10340 b0117e0247ff926857d68575d5719bb2 600 SUPERFAMILY SSF52218 62 208 7.98E-43 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS10340 b0117e0247ff926857d68575d5719bb2 600 Pfam PF00175 Oxidoreductase NAD-binding domain 458 564 7.0E-20 T 29-03-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AM354_RS10340 b0117e0247ff926857d68575d5719bb2 600 Pfam PF00667 FAD binding domain 231 425 3.0E-27 T 29-03-2018 IPR003097 FAD-binding, type 1 GO:0016491|GO:0055114 AM354_RS10340 b0117e0247ff926857d68575d5719bb2 600 Hamap MF_01541 Sulfite reductase [NADPH] flavoprotein alpha-component [cysJ]. 2 600 52.451 T 29-03-2018 IPR029758 Sulphite reductase [NADPH] flavoprotein, alpha chain, Proteobacteria GO:0000103|GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM354_RS10340 b0117e0247ff926857d68575d5719bb2 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 526 542 1.2E-28 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM354_RS10340 b0117e0247ff926857d68575d5719bb2 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 457 476 1.2E-28 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM354_RS10340 b0117e0247ff926857d68575d5719bb2 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 482 491 1.2E-28 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM354_RS10340 b0117e0247ff926857d68575d5719bb2 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 549 557 1.2E-28 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM354_RS10340 b0117e0247ff926857d68575d5719bb2 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 271 281 1.2E-28 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM354_RS10340 b0117e0247ff926857d68575d5719bb2 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 420 429 1.2E-28 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM354_RS10340 b0117e0247ff926857d68575d5719bb2 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 387 394 1.2E-28 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM354_RS10340 b0117e0247ff926857d68575d5719bb2 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 495 506 1.2E-28 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM354_RS10340 b0117e0247ff926857d68575d5719bb2 600 TIGRFAM TIGR01931 cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component 10 600 7.4E-276 T 29-03-2018 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0000103|GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM354_RS10340 b0117e0247ff926857d68575d5719bb2 600 SUPERFAMILY SSF63380 230 447 7.94E-66 T 29-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AM354_RS10340 b0117e0247ff926857d68575d5719bb2 600 PIRSF PIRSF000207 1 600 1.6E-278 T 29-03-2018 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0000103|GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM354_RS10340 b0117e0247ff926857d68575d5719bb2 600 Pfam PF00258 Flavodoxin 66 192 3.1E-30 T 29-03-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 AM354_RS10340 b0117e0247ff926857d68575d5719bb2 600 Gene3D G3DSA:3.40.50.80 443 599 1.4E-36 T 29-03-2018 AM354_RS10340 b0117e0247ff926857d68575d5719bb2 600 SUPERFAMILY SSF52343 445 600 2.88E-52 T 29-03-2018 AM354_RS22295 f75c8f4783ffbe5064a62ba95d41429a 291 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 19 277 5.3E-114 T 29-03-2018 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 AM354_RS22295 f75c8f4783ffbe5064a62ba95d41429a 291 SUPERFAMILY SSF161098 16 268 1.83E-52 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS22295 f75c8f4783ffbe5064a62ba95d41429a 291 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 274 2.3E-14 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS22295 f75c8f4783ffbe5064a62ba95d41429a 291 Gene3D G3DSA:1.10.3720.10 18 285 1.9E-39 T 29-03-2018 AM354_RS22295 f75c8f4783ffbe5064a62ba95d41429a 291 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 14 275 2.7E-109 T 29-03-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 AM354_RS11365 8cb11d2e666d02d5cc7b596f7c17fc77 502 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 4 484 8.0E-187 T 29-03-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00410+1.2.1.18|KEGG: 00562+1.2.1.18|KEGG: 00640+1.2.1.18+1.2.1.27|MetaCyc: PWY-5642|MetaCyc: PWY-6373|Reactome: R-HSA-70895 AM354_RS11365 8cb11d2e666d02d5cc7b596f7c17fc77 502 Pfam PF00171 Aldehyde dehydrogenase family 18 480 1.4E-137 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM354_RS11365 8cb11d2e666d02d5cc7b596f7c17fc77 502 SUPERFAMILY SSF53720 2 484 1.96E-144 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM354_RS11365 8cb11d2e666d02d5cc7b596f7c17fc77 502 Gene3D G3DSA:3.40.605.10 1 262 8.6E-82 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM354_RS11365 8cb11d2e666d02d5cc7b596f7c17fc77 502 Gene3D G3DSA:3.40.309.10 263 462 3.7E-63 T 29-03-2018 AM354_RS10385 533920922f6fd95d53e632615f267110 396 SUPERFAMILY SSF51905 120 262 1.56E-18 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS10385 533920922f6fd95d53e632615f267110 396 Gene3D G3DSA:3.50.50.60 1 22 0.096 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS10385 533920922f6fd95d53e632615f267110 396 Gene3D G3DSA:3.50.50.60 23 110 2.1E-4 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS10385 533920922f6fd95d53e632615f267110 396 Gene3D G3DSA:3.50.50.60 120 262 9.6E-22 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS10385 533920922f6fd95d53e632615f267110 396 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 143 2.0E-8 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS10385 533920922f6fd95d53e632615f267110 396 SUPERFAMILY SSF51905 2 143 3.32E-20 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS01710 6f2f49715de0ab258cb34f015ba8a042 458 SUPERFAMILY SSF160240 287 361 3.27E-10 T 29-03-2018 AM354_RS01710 6f2f49715de0ab258cb34f015ba8a042 458 SUPERFAMILY SSF161111 6 204 6.28E-51 T 29-03-2018 AM354_RS01710 6f2f49715de0ab258cb34f015ba8a042 458 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 9 275 3.0E-62 T 29-03-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AM354_RS01710 6f2f49715de0ab258cb34f015ba8a042 458 Gene3D G3DSA:3.30.70.1350 202 283 1.1E-11 T 29-03-2018 IPR027470 Cation efflux protein, cytoplasmic domain AM354_RS01710 6f2f49715de0ab258cb34f015ba8a042 458 Gene3D G3DSA:3.30.70.1350 367 456 1.1E-17 T 29-03-2018 IPR027470 Cation efflux protein, cytoplasmic domain AM354_RS01710 6f2f49715de0ab258cb34f015ba8a042 458 Pfam PF16916 Dimerisation domain of Zinc Transporter 375 453 1.2E-15 T 29-03-2018 IPR027470 Cation efflux protein, cytoplasmic domain AM354_RS01710 6f2f49715de0ab258cb34f015ba8a042 458 Pfam PF16916 Dimerisation domain of Zinc Transporter 211 277 1.1E-8 T 29-03-2018 IPR027470 Cation efflux protein, cytoplasmic domain AM354_RS01710 6f2f49715de0ab258cb34f015ba8a042 458 Pfam PF16916 Dimerisation domain of Zinc Transporter 287 361 6.4E-10 T 29-03-2018 IPR027470 Cation efflux protein, cytoplasmic domain AM354_RS01710 6f2f49715de0ab258cb34f015ba8a042 458 Gene3D G3DSA:1.20.1510.10 6 201 3.0E-39 T 29-03-2018 AM354_RS01710 6f2f49715de0ab258cb34f015ba8a042 458 SUPERFAMILY SSF160240 379 454 4.84E-16 T 29-03-2018 AM354_RS01710 6f2f49715de0ab258cb34f015ba8a042 458 Gene3D G3DSA:3.30.70.1350 284 364 5.7E-11 T 29-03-2018 IPR027470 Cation efflux protein, cytoplasmic domain AM354_RS01710 6f2f49715de0ab258cb34f015ba8a042 458 SUPERFAMILY SSF160240 206 279 2.88E-10 T 29-03-2018 AM354_RS01710 6f2f49715de0ab258cb34f015ba8a042 458 Pfam PF01545 Cation efflux family 12 203 3.6E-44 T 29-03-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AM354_RS06230 cff31e092610eee74d4786f5bf6fa675 1213 Gene3D G3DSA:3.40.50.2000 619 813 3.2E-29 T 29-03-2018 AM354_RS06230 cff31e092610eee74d4786f5bf6fa675 1213 SUPERFAMILY SSF53756 16 405 9.42E-56 T 29-03-2018 AM354_RS06230 cff31e092610eee74d4786f5bf6fa675 1213 SUPERFAMILY SSF53756 840 1203 3.56E-23 T 29-03-2018 AM354_RS06230 cff31e092610eee74d4786f5bf6fa675 1213 Gene3D G3DSA:3.40.50.2000 202 385 6.1E-32 T 29-03-2018 AM354_RS06230 cff31e092610eee74d4786f5bf6fa675 1213 Gene3D G3DSA:3.40.50.2000 1013 1190 9.4E-14 T 29-03-2018 AM354_RS06230 cff31e092610eee74d4786f5bf6fa675 1213 Pfam PF00534 Glycosyl transferases group 1 217 381 2.9E-26 T 29-03-2018 IPR001296 Glycosyl transferase, family 1 AM354_RS06230 cff31e092610eee74d4786f5bf6fa675 1213 Pfam PF00534 Glycosyl transferases group 1 623 757 2.2E-12 T 29-03-2018 IPR001296 Glycosyl transferase, family 1 AM354_RS06230 cff31e092610eee74d4786f5bf6fa675 1213 SUPERFAMILY SSF53756 480 821 1.41E-37 T 29-03-2018 AM354_RS19000 7429e0cb70fd41e70203e77b87477de8 218 SMART SM00947 30 192 1.2E-67 T 29-03-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AM354_RS19000 7429e0cb70fd41e70203e77b87477de8 218 SUPERFAMILY SSF53056 1 211 7.19E-76 T 29-03-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AM354_RS19000 7429e0cb70fd41e70203e77b87477de8 218 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 42 49 - T 29-03-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AM354_RS19000 7429e0cb70fd41e70203e77b87477de8 218 Pfam PF00484 Carbonic anhydrase 38 188 2.5E-50 T 29-03-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AM354_RS19000 7429e0cb70fd41e70203e77b87477de8 218 Gene3D G3DSA:3.40.1050.10 1 217 9.1E-75 T 29-03-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AM354_RS19000 7429e0cb70fd41e70203e77b87477de8 218 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 82 102 - T 29-03-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AM354_RS13930 127a49b868808f4da66d0e37bb1d8415 222 Gene3D G3DSA:1.10.150.240 33 75 5.6E-15 T 29-03-2018 IPR023198 Phosphoglycolate phosphatase, domain 2 AM354_RS13930 127a49b868808f4da66d0e37bb1d8415 222 Pfam PF13419 Haloacid dehalogenase-like hydrolase 7 183 3.1E-23 T 29-03-2018 IPR023214 HAD-like domain AM354_RS13930 127a49b868808f4da66d0e37bb1d8415 222 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 7 179 2.0E-6 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS13930 127a49b868808f4da66d0e37bb1d8415 222 Gene3D G3DSA:3.40.50.1000 1 32 0.057 T 29-03-2018 IPR023214 HAD-like domain AM354_RS13930 127a49b868808f4da66d0e37bb1d8415 222 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 54 182 1.4E-12 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS13930 127a49b868808f4da66d0e37bb1d8415 222 Gene3D G3DSA:3.40.50.1000 76 218 1.5E-19 T 29-03-2018 IPR023214 HAD-like domain AM354_RS13930 127a49b868808f4da66d0e37bb1d8415 222 SUPERFAMILY SSF56784 4 212 9.79E-47 T 29-03-2018 IPR023214 HAD-like domain AM354_RS13260 590d724f0ed969471105ebcdb93d8e91 850 ProSitePatterns PS01092 Adenylate cyclase class-I signature 1. 242 253 - T 29-03-2018 IPR024686 Adenylate cyclase class-I, conserved site KEGG: 00230+4.6.1.1 AM354_RS13260 590d724f0ed969471105ebcdb93d8e91 850 Pfam PF12633 Adenylate cyclase NT domain 5 200 2.5E-81 T 29-03-2018 IPR024685 Adenylate cyclase class-I, N-terminal domain KEGG: 00230+4.6.1.1 AM354_RS13260 590d724f0ed969471105ebcdb93d8e91 850 Pfam PF01295 Adenylate cyclase, class-I 228 825 5.6E-262 T 29-03-2018 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 AM354_RS13260 590d724f0ed969471105ebcdb93d8e91 850 PIRSF PIRSF001444 1 850 0.0 T 29-03-2018 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 AM354_RS13260 590d724f0ed969471105ebcdb93d8e91 850 ProSitePatterns PS01093 Adenylate cyclase class-I signature 2. 598 612 - T 29-03-2018 IPR024686 Adenylate cyclase class-I, conserved site KEGG: 00230+4.6.1.1 AM354_RS25315 af279d68c0a6e2c5bf3c570b5958eb87 137 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 6 135 2.2E-43 T 29-03-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 AM354_RS25315 af279d68c0a6e2c5bf3c570b5958eb87 137 Pfam PF00460 Flagella basal body rod protein 9 39 2.9E-12 T 29-03-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 AM354_RS25315 af279d68c0a6e2c5bf3c570b5958eb87 137 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 15 35 - T 29-03-2018 IPR019776 Flagellar basal body rod protein, conserved site AM354_RS25315 af279d68c0a6e2c5bf3c570b5958eb87 137 PIRSF PIRSF002889 1 137 1.1E-42 T 29-03-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 AM354_RS03355 7bc52ae40a86cfdc5c501a8ac39eceb8 384 Gene3D G3DSA:3.90.1150.10 246 384 2.2E-40 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS03355 7bc52ae40a86cfdc5c501a8ac39eceb8 384 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 12 373 2.5E-128 T 29-03-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AM354_RS03355 7bc52ae40a86cfdc5c501a8ac39eceb8 384 SUPERFAMILY SSF53383 4 376 1.25E-112 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS03355 7bc52ae40a86cfdc5c501a8ac39eceb8 384 Gene3D G3DSA:3.40.640.10 3 245 5.8E-51 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS03355 7bc52ae40a86cfdc5c501a8ac39eceb8 384 Hamap MF_01167 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase [arnB]. 1 379 70.726 T 29-03-2018 IPR022850 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase, ArnB GO:0008483 KEGG: 00520+2.6.1.87 AM354_RS03355 7bc52ae40a86cfdc5c501a8ac39eceb8 384 PIRSF PIRSF000390 1 381 4.7E-110 T 29-03-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AM354_RS11125 98b5558f919cfd0a89da12d1027dad90 314 Gene3D G3DSA:3.40.190.10 178 263 1.8E-19 T 29-03-2018 AM354_RS11125 98b5558f919cfd0a89da12d1027dad90 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 7.3E-19 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS11125 98b5558f919cfd0a89da12d1027dad90 314 Pfam PF03466 LysR substrate binding domain 89 290 4.0E-41 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS11125 98b5558f919cfd0a89da12d1027dad90 314 SUPERFAMILY SSF46785 5 112 4.47E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS11125 98b5558f919cfd0a89da12d1027dad90 314 Gene3D G3DSA:3.40.190.10 92 177 6.1E-17 T 29-03-2018 AM354_RS11125 98b5558f919cfd0a89da12d1027dad90 314 Gene3D G3DSA:1.10.10.10 3 83 2.2E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS11125 98b5558f919cfd0a89da12d1027dad90 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 2.7E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS11125 98b5558f919cfd0a89da12d1027dad90 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 2.7E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS11125 98b5558f919cfd0a89da12d1027dad90 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 2.7E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS11125 98b5558f919cfd0a89da12d1027dad90 314 SUPERFAMILY SSF53850 89 296 1.79E-42 T 29-03-2018 AM354_RS20995 a27b9b032f6dcb12bad46c091ff80e0c 545 SUPERFAMILY SSF46977 437 539 7.98E-32 T 29-03-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM354_RS20995 a27b9b032f6dcb12bad46c091ff80e0c 545 SUPERFAMILY SSF56425 250 365 4.04E-41 T 29-03-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM354_RS20995 a27b9b032f6dcb12bad46c091ff80e0c 545 Pfam PF00890 FAD binding domain 22 404 7.9E-102 T 29-03-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM354_RS20995 a27b9b032f6dcb12bad46c091ff80e0c 545 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 21 532 1.5E-223 T 29-03-2018 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342 AM354_RS20995 a27b9b032f6dcb12bad46c091ff80e0c 545 Pfam PF02910 Fumarate reductase flavoprotein C-term 453 533 1.1E-14 T 29-03-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM354_RS20995 a27b9b032f6dcb12bad46c091ff80e0c 545 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 22 44 7.3E-5 T 29-03-2018 AM354_RS20995 a27b9b032f6dcb12bad46c091ff80e0c 545 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 382 389 7.3E-5 T 29-03-2018 AM354_RS20995 a27b9b032f6dcb12bad46c091ff80e0c 545 Gene3D G3DSA:1.20.58.100 425 534 3.8E-29 T 29-03-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM354_RS20995 a27b9b032f6dcb12bad46c091ff80e0c 545 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 23 42 2.8E-10 T 29-03-2018 AM354_RS20995 a27b9b032f6dcb12bad46c091ff80e0c 545 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 367 389 2.8E-10 T 29-03-2018 AM354_RS20995 a27b9b032f6dcb12bad46c091ff80e0c 545 Gene3D G3DSA:3.50.50.60 20 246 8.5E-20 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS20995 a27b9b032f6dcb12bad46c091ff80e0c 545 Gene3D G3DSA:3.50.50.60 347 422 2.7E-14 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS20995 a27b9b032f6dcb12bad46c091ff80e0c 545 PIRSF PIRSF000171 12 262 5.7E-20 T 29-03-2018 AM354_RS20995 a27b9b032f6dcb12bad46c091ff80e0c 545 PIRSF PIRSF000171 352 542 3.8E-13 T 29-03-2018 AM354_RS20995 a27b9b032f6dcb12bad46c091ff80e0c 545 SUPERFAMILY SSF51905 12 267 3.4E-73 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS20995 a27b9b032f6dcb12bad46c091ff80e0c 545 SUPERFAMILY SSF51905 368 459 3.4E-73 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS20995 a27b9b032f6dcb12bad46c091ff80e0c 545 Gene3D G3DSA:3.90.700.10 257 346 5.2E-34 T 29-03-2018 AM354_RS15210 487978d9af1dae67efe078182b69aafd 661 Pfam PF02316 Mu DNA-binding domain 12 115 1.5E-8 T 29-03-2018 IPR003314 Mu-type HTH domain GO:0003677 AM354_RS15210 487978d9af1dae67efe078182b69aafd 661 SUPERFAMILY SSF50610 482 558 1.7E-21 T 29-03-2018 IPR009004 Transposase, Mu, C-terminal AM354_RS15210 487978d9af1dae67efe078182b69aafd 661 SUPERFAMILY SSF53098 261 478 1.52E-76 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS15210 487978d9af1dae67efe078182b69aafd 661 SUPERFAMILY SSF46689 176 248 3.23E-18 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS15210 487978d9af1dae67efe078182b69aafd 661 Pfam PF09299 Mu transposase, C-terminal 485 555 2.4E-14 T 29-03-2018 IPR015378 Transposase-like, Mu, C-terminal AM354_RS15210 487978d9af1dae67efe078182b69aafd 661 Gene3D G3DSA:1.10.10.60 80 162 6.6E-24 T 29-03-2018 AM354_RS15210 487978d9af1dae67efe078182b69aafd 661 SUPERFAMILY SSF46689 79 169 1.52E-21 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS15210 487978d9af1dae67efe078182b69aafd 661 Pfam PF09039 Mu DNA binding, I gamma subdomain 148 257 1.3E-31 T 29-03-2018 IPR015126 Mu DNA binding, I gamma subdomain AM354_RS15210 487978d9af1dae67efe078182b69aafd 661 Gene3D G3DSA:3.30.420.10 249 486 1.6E-22 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS15210 487978d9af1dae67efe078182b69aafd 661 Gene3D G3DSA:1.10.10.60 179 243 6.5E-16 T 29-03-2018 AM354_RS15210 487978d9af1dae67efe078182b69aafd 661 Gene3D G3DSA:1.10.10.10 1 68 2.4E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS15210 487978d9af1dae67efe078182b69aafd 661 Pfam PF02914 Bacteriophage Mu transposase 258 471 2.2E-113 T 29-03-2018 IPR004189 Bacteriophage Mu, transposase GO:0003677|GO:0004803|GO:0006313|GO:0015074 AM354_RS15210 487978d9af1dae67efe078182b69aafd 661 SUPERFAMILY SSF46955 2 67 4.58E-12 T 29-03-2018 IPR009061 Putative DNA-binding domain AM354_RS15210 487978d9af1dae67efe078182b69aafd 661 ProDom PD223702 DNA TRANSPOSASE DNA-BINDING TRANSPOSABLE INTEGRATION ELEMENT RECOMBINATION TRANSPOSASE EXCISION TRANSPOSITION 266 478 5.0E-89 T 29-03-2018 AM354_RS15210 487978d9af1dae67efe078182b69aafd 661 Gene3D G3DSA:2.30.30.130 491 558 2.0E-16 T 29-03-2018 IPR015378 Transposase-like, Mu, C-terminal AM354_RS06610 7b3f863475a41acc3aa260249926cbf4 228 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 19 136 1.0E-38 T 29-03-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 AM354_RS06610 7b3f863475a41acc3aa260249926cbf4 228 SUPERFAMILY SSF49584 130 222 6.41E-18 T 29-03-2018 IPR016148 Pili assembly chaperone, C-terminal AM354_RS06610 7b3f863475a41acc3aa260249926cbf4 228 Gene3D G3DSA:2.60.40.10 139 225 3.2E-19 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS06610 7b3f863475a41acc3aa260249926cbf4 228 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 94 111 - T 29-03-2018 IPR018046 Pili assembly chaperone, conserved site AM354_RS06610 7b3f863475a41acc3aa260249926cbf4 228 Gene3D G3DSA:2.60.40.10 19 137 3.2E-35 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS06610 7b3f863475a41acc3aa260249926cbf4 228 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 158 220 8.7E-12 T 29-03-2018 IPR016148 Pili assembly chaperone, C-terminal AM354_RS06610 7b3f863475a41acc3aa260249926cbf4 228 SUPERFAMILY SSF49354 15 136 3.4E-38 T 29-03-2018 IPR008962 PapD-like AM354_RS06610 7b3f863475a41acc3aa260249926cbf4 228 PRINTS PR00969 Pili chaperone signature 95 112 1.8E-28 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS06610 7b3f863475a41acc3aa260249926cbf4 228 PRINTS PR00969 Pili chaperone signature 118 133 1.8E-28 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS06610 7b3f863475a41acc3aa260249926cbf4 228 PRINTS PR00969 Pili chaperone signature 153 168 1.8E-28 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS06610 7b3f863475a41acc3aa260249926cbf4 228 PRINTS PR00969 Pili chaperone signature 67 88 1.8E-28 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS06610 7b3f863475a41acc3aa260249926cbf4 228 PRINTS PR00969 Pili chaperone signature 20 29 1.8E-28 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS06585 4db7ee8bba2a445e787d4f9ab5ac1678 475 SMART SM00098 69 475 1.4E-200 T 29-03-2018 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AM354_RS06585 4db7ee8bba2a445e787d4f9ab5ac1678 475 SUPERFAMILY SSF53649 49 474 1.12E-134 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AM354_RS06585 4db7ee8bba2a445e787d4f9ab5ac1678 475 Pfam PF00245 Alkaline phosphatase 69 434 6.0E-122 T 29-03-2018 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AM354_RS06585 4db7ee8bba2a445e787d4f9ab5ac1678 475 PRINTS PR00113 Alkaline phosphatase signature 225 235 2.1E-49 T 29-03-2018 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AM354_RS06585 4db7ee8bba2a445e787d4f9ab5ac1678 475 PRINTS PR00113 Alkaline phosphatase signature 68 88 2.1E-49 T 29-03-2018 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AM354_RS06585 4db7ee8bba2a445e787d4f9ab5ac1678 475 PRINTS PR00113 Alkaline phosphatase signature 125 140 2.1E-49 T 29-03-2018 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AM354_RS06585 4db7ee8bba2a445e787d4f9ab5ac1678 475 PRINTS PR00113 Alkaline phosphatase signature 162 182 2.1E-49 T 29-03-2018 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AM354_RS06585 4db7ee8bba2a445e787d4f9ab5ac1678 475 PRINTS PR00113 Alkaline phosphatase signature 324 353 2.1E-49 T 29-03-2018 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AM354_RS06585 4db7ee8bba2a445e787d4f9ab5ac1678 475 ProSitePatterns PS00123 Alkaline phosphatase active site. 125 133 - T 29-03-2018 IPR018299 Alkaline phosphatase, active site GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AM354_RS06585 4db7ee8bba2a445e787d4f9ab5ac1678 475 Gene3D G3DSA:3.40.720.10 27 475 1.1E-126 T 29-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 AM354_RS06035 189bcf590cdd33bd0d8605c085966dbc 455 SUPERFAMILY SSF143548 16 158 8.11E-45 T 29-03-2018 IPR029009 Allosteric substrate binding domain Reactome: R-HSA-977347 AM354_RS06035 189bcf590cdd33bd0d8605c085966dbc 455 Pfam PF03315 Serine dehydratase beta chain 3 155 1.1E-55 T 29-03-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 AM354_RS06035 189bcf590cdd33bd0d8605c085966dbc 455 Pfam PF03313 Serine dehydratase alpha chain 184 448 2.4E-94 T 29-03-2018 IPR005130 Serine dehydratase-like, alpha subunit AM354_RS06035 189bcf590cdd33bd0d8605c085966dbc 455 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 2 451 4.0E-220 T 29-03-2018 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 AM354_RS06035 189bcf590cdd33bd0d8605c085966dbc 455 Gene3D G3DSA:1.10.4100.10 258 445 1.2E-32 T 29-03-2018 AM354_RS06035 189bcf590cdd33bd0d8605c085966dbc 455 Gene3D G3DSA:3.30.1330.90 10 158 4.4E-50 T 29-03-2018 IPR029009 Allosteric substrate binding domain Reactome: R-HSA-977347 AM354_RS22590 07f0fd2b2349704a26f336fcfcdcc9ce 414 Gene3D G3DSA:2.60.120.330 5 414 5.1E-120 T 29-03-2018 IPR027443 Isopenicillin N synthase-like AM354_RS22590 07f0fd2b2349704a26f336fcfcdcc9ce 414 Pfam PF07350 Protein of unknown function (DUF1479) 8 413 9.1E-139 T 29-03-2018 IPR010856 Protein of unknown function DUF1479 AM354_RS22590 07f0fd2b2349704a26f336fcfcdcc9ce 414 SUPERFAMILY SSF51197 3 413 2.47E-147 T 29-03-2018 AM354_RS02655 9c1dca94c3315378fdff9291182f1ffc 733 SUPERFAMILY SSF55486 64 725 7.33E-183 T 29-03-2018 AM354_RS02655 9c1dca94c3315378fdff9291182f1ffc 733 Gene3D G3DSA:1.20.1050.40 61 195 1.6E-38 T 29-03-2018 IPR024080 Neurolysin/Thimet oligopeptidase, N-terminal AM354_RS02655 9c1dca94c3315378fdff9291182f1ffc 733 Pfam PF01432 Peptidase family M3 281 727 1.8E-139 T 29-03-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 AM354_RS02655 9c1dca94c3315378fdff9291182f1ffc 733 Gene3D G3DSA:1.10.1370.10 197 423 2.1E-43 T 29-03-2018 AM354_RS02655 9c1dca94c3315378fdff9291182f1ffc 733 Gene3D G3DSA:1.10.1370.10 509 733 1.9E-54 T 29-03-2018 AM354_RS20310 818caade6c80860ac61a7fd3822c80e5 66 Pfam PF06786 Uncharacterised protein family (UPF0253) 2 65 3.4E-36 T 29-03-2018 IPR009624 Uncharacterised protein family UPF0253 AM354_RS20310 818caade6c80860ac61a7fd3822c80e5 66 ProDom PD054643 UPF0253 YAEP CYTOPLASMIC VP2335 YPO1064.1/Y3113/YP2785 VC0872 VV2574 PBPRA2947 VV11836 1 66 1.0E-19 T 29-03-2018 IPR009624 Uncharacterised protein family UPF0253 AM354_RS20310 818caade6c80860ac61a7fd3822c80e5 66 Hamap MF_01064 UPF0253 protein YaeP [yaeP]. 1 66 26.369 T 29-03-2018 IPR009624 Uncharacterised protein family UPF0253 AM354_RS13370 af5e758c88b34ac31b21e3eea8d8d6b7 419 SUPERFAMILY SSF50249 48 125 1.88E-29 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS13370 af5e758c88b34ac31b21e3eea8d8d6b7 419 Gene3D G3DSA:2.40.50.140 2 126 2.3E-46 T 29-03-2018 AM354_RS13370 af5e758c88b34ac31b21e3eea8d8d6b7 419 SMART SM00382 170 355 1.0E-8 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS13370 af5e758c88b34ac31b21e3eea8d8d6b7 419 Pfam PF07497 Rho termination factor, RNA-binding domain 52 125 4.7E-32 T 29-03-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 AM354_RS13370 af5e758c88b34ac31b21e3eea8d8d6b7 419 Gene3D G3DSA:3.40.50.300 129 419 4.7E-58 T 29-03-2018 AM354_RS13370 af5e758c88b34ac31b21e3eea8d8d6b7 419 SMART SM00357 52 118 3.3E-18 T 29-03-2018 IPR011129 Cold shock domain GO:0003676 AM354_RS13370 af5e758c88b34ac31b21e3eea8d8d6b7 419 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 160 363 2.3E-22 T 29-03-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AM354_RS13370 af5e758c88b34ac31b21e3eea8d8d6b7 419 Pfam PF07498 Rho termination factor, N-terminal domain 5 47 2.0E-16 T 29-03-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 AM354_RS13370 af5e758c88b34ac31b21e3eea8d8d6b7 419 SUPERFAMILY SSF68912 1 46 3.92E-12 T 29-03-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 AM354_RS13370 af5e758c88b34ac31b21e3eea8d8d6b7 419 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 419 250.745 T 29-03-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 AM354_RS13370 af5e758c88b34ac31b21e3eea8d8d6b7 419 SMART SM00959 5 47 3.1E-17 T 29-03-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 AM354_RS13370 af5e758c88b34ac31b21e3eea8d8d6b7 419 TIGRFAM TIGR00767 rho: transcription termination factor Rho 2 417 6.6E-222 T 29-03-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 AM354_RS13370 af5e758c88b34ac31b21e3eea8d8d6b7 419 SUPERFAMILY SSF52540 90 371 6.75E-68 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS20650 585156906b2fad10d795aaaecb9447d0 581 SUPERFAMILY SSF53649 442 457 4.58E-77 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AM354_RS20650 585156906b2fad10d795aaaecb9447d0 581 SUPERFAMILY SSF53649 4 387 4.58E-77 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AM354_RS20650 585156906b2fad10d795aaaecb9447d0 581 Pfam PF00884 Sulfatase 4 335 6.7E-38 T 29-03-2018 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 AM354_RS20650 585156906b2fad10d795aaaecb9447d0 581 Gene3D G3DSA:3.40.720.10 3 356 1.6E-61 T 29-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 AM354_RS01260 a1d22e7d7751c18f5b86405ac3d3194a 167 ProSitePatterns PS01265 Tpx family signature. 84 95 - T 29-03-2018 IPR018219 Thiol peroxidase conserved site GO:0016684|GO:0055114 AM354_RS01260 a1d22e7d7751c18f5b86405ac3d3194a 167 Hamap MF_00269 Probable thiol peroxidase [tpx]. 4 167 39.895 T 29-03-2018 IPR002065 Putative thiol peroxidase Tpx GO:0008379|GO:0016209|GO:0055114 AM354_RS01260 a1d22e7d7751c18f5b86405ac3d3194a 167 Pfam PF08534 Redoxin 20 163 4.8E-27 T 29-03-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 AM354_RS01260 a1d22e7d7751c18f5b86405ac3d3194a 167 SUPERFAMILY SSF52833 4 164 5.74E-42 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS01260 a1d22e7d7751c18f5b86405ac3d3194a 167 Gene3D G3DSA:3.40.30.10 2 167 3.0E-22 T 29-03-2018 AM354_RS25810 af5eee0a289e09e8b4ffdfef62e83f4c 404 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 222 259 - T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM354_RS25810 af5eee0a289e09e8b4ffdfef62e83f4c 404 Gene3D G3DSA:3.90.1150.10 291 402 1.4E-13 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS25810 af5eee0a289e09e8b4ffdfef62e83f4c 404 Pfam PF00202 Aminotransferase class-III 25 399 8.0E-126 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM354_RS25810 af5eee0a289e09e8b4ffdfef62e83f4c 404 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 15 399 1.8E-156 T 29-03-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 AM354_RS25810 af5eee0a289e09e8b4ffdfef62e83f4c 404 TIGRFAM TIGR03246 arg_catab_astC: succinylornithine transaminase family 7 403 2.8E-225 T 29-03-2018 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria GO:0006520|GO:0008483|GO:0030170 AM354_RS25810 af5eee0a289e09e8b4ffdfef62e83f4c 404 Gene3D G3DSA:3.40.640.10 49 290 1.9E-82 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS25810 af5eee0a289e09e8b4ffdfef62e83f4c 404 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 13 400 45.726 T 29-03-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 AM354_RS25810 af5eee0a289e09e8b4ffdfef62e83f4c 404 SUPERFAMILY SSF53383 15 399 2.18E-128 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS25810 af5eee0a289e09e8b4ffdfef62e83f4c 404 PIRSF PIRSF000521 20 159 4.2E-6 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM354_RS25810 af5eee0a289e09e8b4ffdfef62e83f4c 404 PIRSF PIRSF000521 170 402 2.2E-38 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM354_RS22145 83415e2fb7a2ac30dc6728f946eaafa5 558 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 32 128 4.7E-24 T 29-03-2018 IPR029095 NarX-like, N-terminal AM354_RS22145 83415e2fb7a2ac30dc6728f946eaafa5 558 SUPERFAMILY SSF55874 433 556 1.22E-16 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS22145 83415e2fb7a2ac30dc6728f946eaafa5 558 Gene3D G3DSA:3.30.565.10 425 557 2.2E-23 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS22145 83415e2fb7a2ac30dc6728f946eaafa5 558 SMART SM00387 466 558 9.8E-8 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS22145 83415e2fb7a2ac30dc6728f946eaafa5 558 Pfam PF00672 HAMP domain 174 223 6.9E-7 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM354_RS22145 83415e2fb7a2ac30dc6728f946eaafa5 558 Pfam PF07730 Histidine kinase 364 425 2.6E-16 T 29-03-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AM354_RS22145 83415e2fb7a2ac30dc6728f946eaafa5 558 SMART SM00304 174 227 5.8E-5 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM354_RS22145 83415e2fb7a2ac30dc6728f946eaafa5 558 PIRSF PIRSF003167 295 558 1.2E-93 T 29-03-2018 IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing GO:0000155|GO:0000160|GO:0004673|GO:0016021 AM354_RS22145 83415e2fb7a2ac30dc6728f946eaafa5 558 PIRSF PIRSF003167 1 306 2.0E-74 T 29-03-2018 IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing GO:0000155|GO:0000160|GO:0004673|GO:0016021 AM354_RS22145 83415e2fb7a2ac30dc6728f946eaafa5 558 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 470 556 3.8E-9 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS22145 83415e2fb7a2ac30dc6728f946eaafa5 558 SUPERFAMILY SSF158472 174 225 8.5E-6 T 29-03-2018 AM354_RS04390 3be01da13dbd16c75d87988b18ec84d3 573 PRINTS PR01046 Prolyl-tRNA synthetase signature 140 148 3.5E-14 T 29-03-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 AM354_RS04390 3be01da13dbd16c75d87988b18ec84d3 573 PRINTS PR01046 Prolyl-tRNA synthetase signature 150 161 3.5E-14 T 29-03-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 AM354_RS04390 3be01da13dbd16c75d87988b18ec84d3 573 PRINTS PR01046 Prolyl-tRNA synthetase signature 110 121 3.5E-14 T 29-03-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 AM354_RS04390 3be01da13dbd16c75d87988b18ec84d3 573 PRINTS PR01046 Prolyl-tRNA synthetase signature 72 90 3.5E-14 T 29-03-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 AM354_RS04390 3be01da13dbd16c75d87988b18ec84d3 573 Gene3D G3DSA:3.40.50.800 482 571 1.7E-19 T 29-03-2018 IPR004154 Anticodon-binding AM354_RS04390 3be01da13dbd16c75d87988b18ec84d3 573 Pfam PF03129 Anticodon binding domain 479 565 2.2E-13 T 29-03-2018 IPR004154 Anticodon-binding AM354_RS04390 3be01da13dbd16c75d87988b18ec84d3 573 Pfam PF04073 Aminoacyl-tRNA editing domain 260 371 1.8E-17 T 29-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AM354_RS04390 3be01da13dbd16c75d87988b18ec84d3 573 SUPERFAMILY SSF55681 20 241 3.64E-72 T 29-03-2018 AM354_RS04390 3be01da13dbd16c75d87988b18ec84d3 573 SUPERFAMILY SSF55681 409 480 3.64E-72 T 29-03-2018 AM354_RS04390 3be01da13dbd16c75d87988b18ec84d3 573 SUPERFAMILY SSF55826 251 391 8.76E-19 T 29-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AM354_RS04390 3be01da13dbd16c75d87988b18ec84d3 573 Gene3D G3DSA:3.30.930.10 2 481 1.3E-74 T 29-03-2018 AM354_RS04390 3be01da13dbd16c75d87988b18ec84d3 573 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 6 565 2.9E-148 T 29-03-2018 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AM354_RS04390 3be01da13dbd16c75d87988b18ec84d3 573 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 100 461 5.3E-38 T 29-03-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS04390 3be01da13dbd16c75d87988b18ec84d3 573 SUPERFAMILY SSF52954 466 568 8.02E-22 T 29-03-2018 IPR004154 Anticodon-binding AM354_RS12760 1560b08ecf6ea7c8931412aab87b3603 142 Gene3D G3DSA:3.30.1550.10 3 72 2.8E-34 T 29-03-2018 IPR020784 Ribosomal protein L11, N-terminal AM354_RS12760 1560b08ecf6ea7c8931412aab87b3603 142 Gene3D G3DSA:1.10.10.250 73 141 2.4E-24 T 29-03-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 AM354_RS12760 1560b08ecf6ea7c8931412aab87b3603 142 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 142 30.634 T 29-03-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 AM354_RS12760 1560b08ecf6ea7c8931412aab87b3603 142 SUPERFAMILY SSF46906 68 141 2.35E-26 T 29-03-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 AM354_RS12760 1560b08ecf6ea7c8931412aab87b3603 142 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 140 6.4E-25 T 29-03-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 AM354_RS12760 1560b08ecf6ea7c8931412aab87b3603 142 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 142 1.0E-65 T 29-03-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS12760 1560b08ecf6ea7c8931412aab87b3603 142 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 67 9.1E-30 T 29-03-2018 IPR020784 Ribosomal protein L11, N-terminal AM354_RS12760 1560b08ecf6ea7c8931412aab87b3603 142 ProSitePatterns PS00359 Ribosomal protein L11 signature. 127 142 - T 29-03-2018 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS12760 1560b08ecf6ea7c8931412aab87b3603 142 SMART SM00649 9 141 1.1E-84 T 29-03-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 AM354_RS12760 1560b08ecf6ea7c8931412aab87b3603 142 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 74 2.0E-16 T 29-03-2018 AM354_RS12760 1560b08ecf6ea7c8931412aab87b3603 142 SUPERFAMILY SSF54747 3 73 5.23E-30 T 29-03-2018 IPR020784 Ribosomal protein L11, N-terminal AM354_RS24915 421665b9a024b7303b4738ff58b22c19 811 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 114 811 2.3E-147 T 29-03-2018 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0004872|GO:0005215|GO:0006810|GO:0019867 AM354_RS24915 421665b9a024b7303b4738ff58b22c19 811 Gene3D G3DSA:2.170.130.10 98 227 3.6E-16 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS24915 421665b9a024b7303b4738ff58b22c19 811 Gene3D G3DSA:2.40.170.20 228 811 2.0E-65 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS24915 421665b9a024b7303b4738ff58b22c19 811 SMART SM00965 46 96 2.1E-8 T 29-03-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 AM354_RS24915 421665b9a024b7303b4738ff58b22c19 811 Pfam PF07660 Secretin and TonB N terminus short domain 48 94 9.1E-9 T 29-03-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 AM354_RS24915 421665b9a024b7303b4738ff58b22c19 811 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 115 811 2.2E-118 T 29-03-2018 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0004872|GO:0005215|GO:0006810|GO:0019867 AM354_RS24915 421665b9a024b7303b4738ff58b22c19 811 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 794 811 - T 29-03-2018 IPR010917 TonB-dependent receptor, conserved site AM354_RS24915 421665b9a024b7303b4738ff58b22c19 811 SUPERFAMILY SSF56935 104 811 1.28E-91 T 29-03-2018 AM354_RS24915 421665b9a024b7303b4738ff58b22c19 811 Pfam PF07715 TonB-dependent Receptor Plug Domain 117 219 4.4E-16 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS24915 421665b9a024b7303b4738ff58b22c19 811 Pfam PF00593 TonB dependent receptor 328 809 8.7E-47 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS05995 207258ca3e769e84c36ef73bc6da61fd 170 PIRSF PIRSF006865 1 170 6.0E-64 T 29-03-2018 IPR005658 Proteinase inhibitor I11, ecotin AM354_RS05995 207258ca3e769e84c36ef73bc6da61fd 170 Pfam PF03974 Ecotin 38 160 1.4E-51 T 29-03-2018 IPR023189 Proteinase inhibitor I11, ecotin domain AM354_RS05995 207258ca3e769e84c36ef73bc6da61fd 170 Gene3D G3DSA:4.10.1230.10 113 167 3.1E-27 T 29-03-2018 IPR027438 Ecotin, C-terminal AM354_RS05995 207258ca3e769e84c36ef73bc6da61fd 170 Hamap MF_00706 Ecotin [eco]. 4 170 37.721 T 29-03-2018 IPR023084 Proteinase inhibitor I11, ecotin, gammaproteobacteria AM354_RS05995 207258ca3e769e84c36ef73bc6da61fd 170 SUPERFAMILY SSF49772 34 169 7.85E-56 T 29-03-2018 IPR023189 Proteinase inhibitor I11, ecotin domain AM354_RS05995 207258ca3e769e84c36ef73bc6da61fd 170 Gene3D G3DSA:2.60.40.550 35 107 2.2E-33 T 29-03-2018 AM354_RS26155 0ca6a78b1ba86dbe956614d7fee9a39b 131 SUPERFAMILY SSF88723 1 119 6.45E-15 T 29-03-2018 IPR029060 PIN domain-like AM354_RS26155 0ca6a78b1ba86dbe956614d7fee9a39b 131 Gene3D G3DSA:3.40.50.1010 1 129 1.1E-11 T 29-03-2018 IPR029060 PIN domain-like AM354_RS26155 0ca6a78b1ba86dbe956614d7fee9a39b 131 Pfam PF01850 PIN domain 4 116 2.4E-6 T 29-03-2018 IPR002716 PIN domain AM354_RS25710 f40229f899ad459a3733377f4f8df53f 619 Gene3D G3DSA:2.60.120.260 18 168 1.3E-22 T 29-03-2018 IPR008979 Galactose-binding domain-like AM354_RS25710 f40229f899ad459a3733377f4f8df53f 619 SUPERFAMILY SSF51445 271 448 6.21E-10 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily AM354_RS25710 f40229f899ad459a3733377f4f8df53f 619 SUPERFAMILY SSF49785 24 164 3.19E-7 T 29-03-2018 IPR008979 Galactose-binding domain-like AM354_RS25710 f40229f899ad459a3733377f4f8df53f 619 Gene3D G3DSA:3.20.20.80 265 524 1.5E-10 T 29-03-2018 AM354_RS25710 f40229f899ad459a3733377f4f8df53f 619 Gene3D G3DSA:2.60.120.380 169 264 0.26 T 29-03-2018 AM354_RS14870 fea58fcc4009fd9e9c6f492886451e13 1030 Pfam PF00082 Subtilase family 72 409 1.5E-44 T 29-03-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AM354_RS14870 fea58fcc4009fd9e9c6f492886451e13 1030 SUPERFAMILY SSF52743 253 420 9.43E-63 T 29-03-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AM354_RS14870 fea58fcc4009fd9e9c6f492886451e13 1030 SUPERFAMILY SSF52743 53 209 9.43E-63 T 29-03-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AM354_RS14870 fea58fcc4009fd9e9c6f492886451e13 1030 SMART SM00869 757 1020 1.2E-49 T 29-03-2018 IPR005546 Autotransporter beta-domain AM354_RS14870 fea58fcc4009fd9e9c6f492886451e13 1030 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 488 519 8.0E-11 T 29-03-2018 IPR013425 Autotransporter-associated beta strand repeat AM354_RS14870 fea58fcc4009fd9e9c6f492886451e13 1030 Pfam PF03797 Autotransporter beta-domain 760 1010 3.9E-57 T 29-03-2018 IPR005546 Autotransporter beta-domain AM354_RS14870 fea58fcc4009fd9e9c6f492886451e13 1030 Pfam PF12951 Passenger-associated-transport-repeat 489 518 7.5E-10 T 29-03-2018 IPR013425 Autotransporter-associated beta strand repeat AM354_RS14870 fea58fcc4009fd9e9c6f492886451e13 1030 SUPERFAMILY SSF103515 715 1030 1.7E-67 T 29-03-2018 IPR005546 Autotransporter beta-domain AM354_RS14870 fea58fcc4009fd9e9c6f492886451e13 1030 Gene3D G3DSA:2.40.128.130 706 1030 4.7E-60 T 29-03-2018 AM354_RS14870 fea58fcc4009fd9e9c6f492886451e13 1030 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 359 369 - T 29-03-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site AM354_RS14870 fea58fcc4009fd9e9c6f492886451e13 1030 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 553 1030 1.1E-90 T 29-03-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 AM354_RS14870 fea58fcc4009fd9e9c6f492886451e13 1030 Gene3D G3DSA:3.40.50.200 19 421 6.6E-67 T 29-03-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AM354_RS14870 fea58fcc4009fd9e9c6f492886451e13 1030 PRINTS PR00723 Subtilisin serine protease family (S8) signature 136 149 3.4E-9 T 29-03-2018 IPR015500 Peptidase S8, subtilisin-related AM354_RS14870 fea58fcc4009fd9e9c6f492886451e13 1030 PRINTS PR00723 Subtilisin serine protease family (S8) signature 72 91 3.4E-9 T 29-03-2018 IPR015500 Peptidase S8, subtilisin-related AM354_RS14870 fea58fcc4009fd9e9c6f492886451e13 1030 PRINTS PR00723 Subtilisin serine protease family (S8) signature 358 374 3.4E-9 T 29-03-2018 IPR015500 Peptidase S8, subtilisin-related AM354_RS22070 254cf1044b4ba56e7cf06354bb211418 350 PIRSF PIRSF026343 9 347 1.3E-120 T 29-03-2018 IPR014524 Outer membrane protein assembly factor BamC AM354_RS22070 254cf1044b4ba56e7cf06354bb211418 350 Hamap MF_00924 Outer membrane protein assembly factor BamC [bamC]. 9 345 38.307 T 29-03-2018 IPR014524 Outer membrane protein assembly factor BamC AM354_RS22070 254cf1044b4ba56e7cf06354bb211418 350 Pfam PF06804 NlpB/DapX lipoprotein 41 344 1.7E-113 T 29-03-2018 IPR010653 NlpB/DapX lipoprotein AM354_RS25965 15420c34e0ffa34d541b6179f6eaa6ea 266 Pfam PF03609 PTS system sorbose-specific iic component 6 237 4.9E-74 T 29-03-2018 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 AM354_RS25965 15420c34e0ffa34d541b6179f6eaa6ea 266 TIGRFAM TIGR00822 EII-Sor: PTS system, mannose/fructose/sorbose family, IIC component 1 266 1.8E-120 T 29-03-2018 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 AM354_RS04930 b8189f531639896f7d8e16b0be746e99 192 Pfam PF04264 YceI-like domain 26 187 1.7E-40 T 29-03-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like AM354_RS04930 b8189f531639896f7d8e16b0be746e99 192 Gene3D G3DSA:2.40.128.110 18 188 1.3E-48 T 29-03-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like AM354_RS04930 b8189f531639896f7d8e16b0be746e99 192 Hamap MF_00780 Protein YceI [yceI]. 2 192 44.374 T 29-03-2018 IPR023480 Uncharacterised protein family UPF0312/YceI AM354_RS04930 b8189f531639896f7d8e16b0be746e99 192 SMART SM00867 25 189 4.1E-70 T 29-03-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like AM354_RS04930 b8189f531639896f7d8e16b0be746e99 192 SUPERFAMILY SSF101874 23 190 3.66E-54 T 29-03-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like AM354_RS19630 de5a6715bf5ac41b34366201255c09e5 299 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 7 299 58.438 T 29-03-2018 IPR023009 Tyrosine recombinase XerC/XerD AM354_RS19630 de5a6715bf5ac41b34366201255c09e5 299 Gene3D G3DSA:1.10.443.10 113 293 2.1E-50 T 29-03-2018 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM354_RS19630 de5a6715bf5ac41b34366201255c09e5 299 SUPERFAMILY SSF47823 5 101 2.35E-36 T 29-03-2018 IPR010998 Integrase, Lambda-type, N-terminal AM354_RS19630 de5a6715bf5ac41b34366201255c09e5 299 SUPERFAMILY SSF56349 107 297 5.0E-59 T 29-03-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AM354_RS19630 de5a6715bf5ac41b34366201255c09e5 299 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 9 91 5.6E-24 T 29-03-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 AM354_RS19630 de5a6715bf5ac41b34366201255c09e5 299 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 5 299 64.147 T 29-03-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 AM354_RS19630 de5a6715bf5ac41b34366201255c09e5 299 Gene3D G3DSA:1.10.150.130 5 112 4.3E-21 T 29-03-2018 IPR023109 Integrase/recombinase, N-terminal AM354_RS19630 de5a6715bf5ac41b34366201255c09e5 299 Pfam PF00589 Phage integrase family 114 285 1.2E-55 T 29-03-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM354_RS19630 de5a6715bf5ac41b34366201255c09e5 299 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 10 299 1.6E-118 T 29-03-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 AM354_RS01745 8a2cad5767ecac779b2702c5e223b871 339 Pfam PF12833 Helix-turn-helix domain 251 329 1.0E-21 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS01745 8a2cad5767ecac779b2702c5e223b871 339 Pfam PF01965 DJ-1/PfpI family 57 187 4.0E-11 T 29-03-2018 IPR002818 DJ-1/PfpI AM354_RS01745 8a2cad5767ecac779b2702c5e223b871 339 SUPERFAMILY SSF52317 17 205 1.81E-32 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS01745 8a2cad5767ecac779b2702c5e223b871 339 SMART SM00342 244 327 1.4E-22 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS01745 8a2cad5767ecac779b2702c5e223b871 339 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 281 323 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM354_RS01745 8a2cad5767ecac779b2702c5e223b871 339 Gene3D G3DSA:3.40.50.880 10 246 1.1E-34 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS01745 8a2cad5767ecac779b2702c5e223b871 339 Gene3D G3DSA:1.10.10.60 289 335 2.9E-15 T 29-03-2018 AM354_RS01745 8a2cad5767ecac779b2702c5e223b871 339 Gene3D G3DSA:1.10.10.60 247 288 1.3E-4 T 29-03-2018 AM354_RS01745 8a2cad5767ecac779b2702c5e223b871 339 SUPERFAMILY SSF46689 280 331 8.96E-13 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS01745 8a2cad5767ecac779b2702c5e223b871 339 SUPERFAMILY SSF46689 227 278 1.76E-6 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS14100 f85eed0499ba10cc5640814883540d4d 471 PRINTS PR01036 Tetracycline resistance protein TetB signature 396 415 6.0E-6 T 29-03-2018 AM354_RS14100 f85eed0499ba10cc5640814883540d4d 471 PRINTS PR01036 Tetracycline resistance protein TetB signature 14 38 6.0E-6 T 29-03-2018 AM354_RS14100 f85eed0499ba10cc5640814883540d4d 471 PRINTS PR01036 Tetracycline resistance protein TetB signature 135 159 6.0E-6 T 29-03-2018 AM354_RS14100 f85eed0499ba10cc5640814883540d4d 471 PRINTS PR01036 Tetracycline resistance protein TetB signature 105 125 6.0E-6 T 29-03-2018 AM354_RS14100 f85eed0499ba10cc5640814883540d4d 471 SUPERFAMILY SSF103473 13 194 8.24E-59 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS14100 f85eed0499ba10cc5640814883540d4d 471 SUPERFAMILY SSF103473 244 452 8.24E-59 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS14100 f85eed0499ba10cc5640814883540d4d 471 Pfam PF07690 Major Facilitator Superfamily 16 405 3.1E-42 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS14100 f85eed0499ba10cc5640814883540d4d 471 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 17 433 1.9E-77 T 29-03-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 AM354_RS14100 f85eed0499ba10cc5640814883540d4d 471 Gene3D G3DSA:1.20.1250.20 11 196 2.0E-28 T 29-03-2018 AM354_RS14100 f85eed0499ba10cc5640814883540d4d 471 Gene3D G3DSA:1.20.1250.20 255 467 1.0E-20 T 29-03-2018 AM354_RS05320 412abd34e87fa9bbb236f7fc39da8a8b 156 SMART SM00422 13 81 1.0E-20 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS05320 412abd34e87fa9bbb236f7fc39da8a8b 156 Gene3D G3DSA:1.10.1660.10 68 138 1.4E-9 T 29-03-2018 AM354_RS05320 412abd34e87fa9bbb236f7fc39da8a8b 156 Pfam PF09278 MerR, DNA binding 56 120 5.4E-14 T 29-03-2018 IPR015358 Transcription regulator MerR, DNA binding AM354_RS05320 412abd34e87fa9bbb236f7fc39da8a8b 156 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 14 25 3.0E-11 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS05320 412abd34e87fa9bbb236f7fc39da8a8b 156 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 48 68 3.0E-11 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS05320 412abd34e87fa9bbb236f7fc39da8a8b 156 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 25 38 3.0E-11 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS05320 412abd34e87fa9bbb236f7fc39da8a8b 156 ProSitePatterns PS00552 MerR-type HTH domain signature. 16 38 - T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS05320 412abd34e87fa9bbb236f7fc39da8a8b 156 SUPERFAMILY SSF46955 13 135 4.76E-27 T 29-03-2018 IPR009061 Putative DNA-binding domain AM354_RS05320 412abd34e87fa9bbb236f7fc39da8a8b 156 Pfam PF00376 MerR family regulatory protein 14 50 5.1E-14 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS05320 412abd34e87fa9bbb236f7fc39da8a8b 156 TIGRFAM TIGR01950 SoxR: redox-sensitive transcriptional activator SoxR 13 152 2.6E-63 T 29-03-2018 IPR010211 Redox-sensitive transcriptional activator SoxR GO:0003677|GO:0006355|GO:0006979|GO:0051537 AM354_RS05320 412abd34e87fa9bbb236f7fc39da8a8b 156 Gene3D G3DSA:1.10.1660.10 9 67 1.7E-18 T 29-03-2018 AM354_RS09735 5d271ef65395c1faf195f3c70d132e4e 188 Gene3D G3DSA:1.10.10.10 66 135 3.0E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS09735 5d271ef65395c1faf195f3c70d132e4e 188 Gene3D G3DSA:1.10.10.10 2 65 1.8E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS09735 5d271ef65395c1faf195f3c70d132e4e 188 SUPERFAMILY SSF46689 68 173 3.94E-16 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS09735 5d271ef65395c1faf195f3c70d132e4e 188 Pfam PF13518 Helix-turn-helix domain 75 126 1.0E-6 T 29-03-2018 AM354_RS09735 5d271ef65395c1faf195f3c70d132e4e 188 Pfam PF13518 Helix-turn-helix domain 20 70 7.4E-10 T 29-03-2018 AM354_RS09735 5d271ef65395c1faf195f3c70d132e4e 188 SUPERFAMILY SSF48295 4 68 5.13E-13 T 29-03-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AM354_RS16310 5d271ef65395c1faf195f3c70d132e4e 188 Gene3D G3DSA:1.10.10.10 66 135 3.0E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS16310 5d271ef65395c1faf195f3c70d132e4e 188 Gene3D G3DSA:1.10.10.10 2 65 1.8E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS16310 5d271ef65395c1faf195f3c70d132e4e 188 SUPERFAMILY SSF46689 68 173 3.94E-16 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS16310 5d271ef65395c1faf195f3c70d132e4e 188 Pfam PF13518 Helix-turn-helix domain 75 126 1.0E-6 T 29-03-2018 AM354_RS16310 5d271ef65395c1faf195f3c70d132e4e 188 Pfam PF13518 Helix-turn-helix domain 20 70 7.4E-10 T 29-03-2018 AM354_RS16310 5d271ef65395c1faf195f3c70d132e4e 188 SUPERFAMILY SSF48295 4 68 5.13E-13 T 29-03-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AM354_RS09885 b125c8601d9cb69cd27fa166ee0bbce0 180 Gene3D G3DSA:2.60.120.10 2 157 9.8E-42 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS09885 b125c8601d9cb69cd27fa166ee0bbce0 180 SUPERFAMILY SSF51182 1 179 4.45E-43 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS09885 b125c8601d9cb69cd27fa166ee0bbce0 180 Hamap MF_01682 Acireductone dioxygenase [mtnD]. 1 172 38.901 T 29-03-2018 IPR023956 Acireductone dioxygenase ARD, bacteria GO:0005506|GO:0010308|GO:0010309|GO:0016151|GO:0019284|GO:0055114 KEGG: 00270+1.13.11.53+1.13.11.54|MetaCyc: PWY-4361|MetaCyc: PWY-5389 AM354_RS09885 b125c8601d9cb69cd27fa166ee0bbce0 180 Pfam PF03079 ARD/ARD' family 5 165 5.3E-33 T 29-03-2018 IPR004313 Acireductone dioxygenase ARD family GO:0010309|GO:0055114 KEGG: 00270+1.13.11.54|MetaCyc: PWY-4361|Reactome: R-HSA-1237112 AM354_RS14250 7b3627711c47fabf9f29850fe4372d56 231 SUPERFAMILY SSF75217 4 182 2.49E-49 T 29-03-2018 IPR029028 Alpha/beta knot methyltransferases AM354_RS14250 7b3627711c47fabf9f29850fe4372d56 231 Gene3D G3DSA:3.40.1280.10 1 190 5.6E-47 T 29-03-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AM354_RS14250 7b3627711c47fabf9f29850fe4372d56 231 Pfam PF12105 SpoU, rRNA methylase, C-terminal 163 217 6.2E-24 T 29-03-2018 IPR022724 RNA methyltransferase, SpoU/TrmH type, C-terminal GO:0009020 AM354_RS14250 7b3627711c47fabf9f29850fe4372d56 231 Hamap MF_02060 tRNA (guanosine(18)-2'-O)-methyltransferase [trmH]. 2 197 36.747 T 29-03-2018 IPR033671 tRNA (guanosine(18)-2'-O)-methyltransferase GO:0008168|GO:0030488 AM354_RS14250 7b3627711c47fabf9f29850fe4372d56 231 Pfam PF00588 SpoU rRNA Methylase family 20 159 8.8E-35 T 29-03-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AM354_RS20825 15d95232a57a5ed0a995e5fbec15540f 374 Pfam PF10758 Protein of unknown function (DUF2586) 3 367 6.0E-171 T 29-03-2018 IPR019694 Bacteriophage HP1, Orf23 AM354_RS01760 d77f8b58d67f80b2408edbb594349cd1 300 Gene3D G3DSA:3.20.20.70 2 299 2.2E-81 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS01760 d77f8b58d67f80b2408edbb594349cd1 300 SMART SM01130 3 291 7.4E-89 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM354_RS01760 d77f8b58d67f80b2408edbb594349cd1 300 PRINTS PR00146 Dihydrodipicolinate synthase signature 130 147 1.2E-14 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM354_RS01760 d77f8b58d67f80b2408edbb594349cd1 300 PRINTS PR00146 Dihydrodipicolinate synthase signature 73 91 1.2E-14 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM354_RS01760 d77f8b58d67f80b2408edbb594349cd1 300 PRINTS PR00146 Dihydrodipicolinate synthase signature 37 58 1.2E-14 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM354_RS01760 d77f8b58d67f80b2408edbb594349cd1 300 SUPERFAMILY SSF51569 3 289 1.99E-82 T 29-03-2018 AM354_RS01760 d77f8b58d67f80b2408edbb594349cd1 300 Pfam PF00701 Dihydrodipicolinate synthetase family 4 287 1.6E-57 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM354_RS01760 d77f8b58d67f80b2408edbb594349cd1 300 PIRSF PIRSF001365 2 300 1.4E-82 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM354_RS06315 a9c27abb655b68c922d8cb4b0e561bcf 361 Gene3D G3DSA:3.40.50.2000 186 344 1.7E-35 T 29-03-2018 AM354_RS06315 a9c27abb655b68c922d8cb4b0e561bcf 361 Pfam PF00534 Glycosyl transferases group 1 186 316 3.2E-25 T 29-03-2018 IPR001296 Glycosyl transferase, family 1 AM354_RS06315 a9c27abb655b68c922d8cb4b0e561bcf 361 Gene3D G3DSA:3.40.50.2000 2 185 1.3E-11 T 29-03-2018 AM354_RS06315 a9c27abb655b68c922d8cb4b0e561bcf 361 SUPERFAMILY SSF53756 11 359 2.32E-67 T 29-03-2018 AM354_RS06315 a9c27abb655b68c922d8cb4b0e561bcf 361 Pfam PF13439 Glycosyltransferase Family 4 12 173 1.6E-19 T 29-03-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193 AM354_RS07985 36e3b6fcb60785fe187d30d727ae7996 37 TIGRFAM TIGR02106 cyd_oper_ybgT: cyd operon protein YbgT 1 30 4.1E-20 T 29-03-2018 IPR011724 Cyd operon protein YbgT MetaCyc: PWY-7545 AM354_RS07985 36e3b6fcb60785fe187d30d727ae7996 37 Pfam PF08173 Membrane bound YbgT-like protein 1 27 3.4E-15 T 29-03-2018 IPR012994 Membrane bound YbgT-like AM354_RS13790 7eda4eeac856d56191b4279e16ac42ef 687 SUPERFAMILY SSF51445 178 652 1.96E-76 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily AM354_RS13790 7eda4eeac856d56191b4279e16ac42ef 687 Gene3D G3DSA:2.60.40.1180 84 172 0.011 T 29-03-2018 AM354_RS13790 7eda4eeac856d56191b4279e16ac42ef 687 Gene3D G3DSA:2.60.40.1180 652 682 0.12 T 29-03-2018 AM354_RS13790 7eda4eeac856d56191b4279e16ac42ef 687 Gene3D G3DSA:3.20.20.80 185 651 3.4E-81 T 29-03-2018 AM354_RS13790 7eda4eeac856d56191b4279e16ac42ef 687 SMART SM00642 194 646 7.1E-76 T 29-03-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AM354_RS13790 7eda4eeac856d56191b4279e16ac42ef 687 Pfam PF00128 Alpha amylase, catalytic domain 227 605 4.5E-41 T 29-03-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AM354_RS13790 7eda4eeac856d56191b4279e16ac42ef 687 PIRSF PIRSF036917 1 685 0.0 T 29-03-2018 IPR014635 Alpha-amylase, MalS type GO:0004556|GO:0005509|GO:0030980|GO:0042597|GO:0051692 KEGG: 00500+3.2.1.1 AM354_RS25245 ac78a7af7a3984bf82fd54804b987cf1 538 Gene3D G3DSA:1.10.287.950 210 315 8.5E-13 T 29-03-2018 AM354_RS25245 ac78a7af7a3984bf82fd54804b987cf1 538 Gene3D G3DSA:1.20.120.30 38 172 1.2E-31 T 29-03-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain AM354_RS25245 ac78a7af7a3984bf82fd54804b987cf1 538 SUPERFAMILY SSF58104 232 513 7.98E-74 T 29-03-2018 AM354_RS25245 ac78a7af7a3984bf82fd54804b987cf1 538 Pfam PF00672 HAMP domain 214 259 1.0E-9 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM354_RS25245 ac78a7af7a3984bf82fd54804b987cf1 538 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 363 390 9.5E-84 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM354_RS25245 ac78a7af7a3984bf82fd54804b987cf1 538 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 60 75 9.5E-84 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM354_RS25245 ac78a7af7a3984bf82fd54804b987cf1 538 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 188 208 9.5E-84 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM354_RS25245 ac78a7af7a3984bf82fd54804b987cf1 538 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 286 315 9.5E-84 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM354_RS25245 ac78a7af7a3984bf82fd54804b987cf1 538 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 9.5E-84 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM354_RS25245 ac78a7af7a3984bf82fd54804b987cf1 538 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 392 421 9.5E-84 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM354_RS25245 ac78a7af7a3984bf82fd54804b987cf1 538 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 440 469 9.5E-84 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM354_RS25245 ac78a7af7a3984bf82fd54804b987cf1 538 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 290 312 - T 29-03-2018 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site AM354_RS25245 ac78a7af7a3984bf82fd54804b987cf1 538 SUPERFAMILY SSF47170 39 173 2.49E-39 T 29-03-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 AM354_RS25245 ac78a7af7a3984bf82fd54804b987cf1 538 SMART SM00283 265 512 4.4E-101 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM354_RS25245 ac78a7af7a3984bf82fd54804b987cf1 538 Gene3D G3DSA:1.10.287.950 316 516 6.5E-48 T 29-03-2018 AM354_RS25245 ac78a7af7a3984bf82fd54804b987cf1 538 Pfam PF02203 Tar ligand binding domain homologue 2 175 1.2E-51 T 29-03-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 AM354_RS25245 ac78a7af7a3984bf82fd54804b987cf1 538 SMART SM00319 44 178 2.2E-29 T 29-03-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 AM354_RS25245 ac78a7af7a3984bf82fd54804b987cf1 538 SMART SM00304 212 264 1.3E-10 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM354_RS25245 ac78a7af7a3984bf82fd54804b987cf1 538 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 323 480 5.3E-55 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM354_RS14585 46d9999ad109ce17bf5fe897645b1e8a 342 SUPERFAMILY SSF47413 8 67 4.59E-15 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS14585 46d9999ad109ce17bf5fe897645b1e8a 342 Gene3D G3DSA:1.10.10.10 1 23 9.4E-6 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS14585 46d9999ad109ce17bf5fe897645b1e8a 342 Pfam PF00356 Bacterial regulatory proteins, lacI family 11 55 8.5E-18 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS14585 46d9999ad109ce17bf5fe897645b1e8a 342 Gene3D G3DSA:3.40.50.2300 174 340 2.5E-55 T 29-03-2018 AM354_RS14585 46d9999ad109ce17bf5fe897645b1e8a 342 SUPERFAMILY SSF53822 68 340 4.4E-92 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS14585 46d9999ad109ce17bf5fe897645b1e8a 342 Gene3D G3DSA:1.10.260.40 24 65 8.9E-19 T 29-03-2018 AM354_RS14585 46d9999ad109ce17bf5fe897645b1e8a 342 ProSitePatterns PS00356 LacI-type HTH domain signature. 12 30 - T 29-03-2018 AM354_RS14585 46d9999ad109ce17bf5fe897645b1e8a 342 SMART SM00354 9 79 3.6E-28 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS14585 46d9999ad109ce17bf5fe897645b1e8a 342 Gene3D G3DSA:3.40.50.2300 66 173 7.5E-24 T 29-03-2018 AM354_RS14585 46d9999ad109ce17bf5fe897645b1e8a 342 Pfam PF13377 Periplasmic binding protein-like domain 176 337 1.2E-45 T 29-03-2018 AM354_RS11460 1fa96e61a82ac1ffe6a78c485cfb9e10 232 SMART SM00882 8 219 3.6E-86 T 29-03-2018 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 Reactome: R-HSA-77108 AM354_RS11460 1fa96e61a82ac1ffe6a78c485cfb9e10 232 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 4 218 1.0E-74 T 29-03-2018 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 Reactome: R-HSA-77108 AM354_RS11460 1fa96e61a82ac1ffe6a78c485cfb9e10 232 Gene3D G3DSA:3.40.1080.10 1 232 1.2E-95 T 29-03-2018 AM354_RS11460 1fa96e61a82ac1ffe6a78c485cfb9e10 232 Pfam PF01144 Coenzyme A transferase 10 217 1.5E-73 T 29-03-2018 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 Reactome: R-HSA-77108 AM354_RS11460 1fa96e61a82ac1ffe6a78c485cfb9e10 232 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 20 35 - T 29-03-2018 IPR004163 Coenzyme A transferase binding site GO:0008152|GO:0008410 Reactome: R-HSA-77108 AM354_RS11460 1fa96e61a82ac1ffe6a78c485cfb9e10 232 SUPERFAMILY SSF100950 5 227 2.09E-86 T 29-03-2018 AM354_RS18285 106c4d81d191b0c1d0c5b037fcfe75c4 178 Gene3D G3DSA:2.40.50.140 1 120 1.9E-46 T 29-03-2018 AM354_RS18285 106c4d81d191b0c1d0c5b037fcfe75c4 178 Pfam PF00436 Single-strand binding protein family 6 112 1.6E-42 T 29-03-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 AM354_RS18285 106c4d81d191b0c1d0c5b037fcfe75c4 178 SUPERFAMILY SSF50249 4 163 1.58E-60 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS18285 106c4d81d191b0c1d0c5b037fcfe75c4 178 PIRSF PIRSF002070 2 161 1.4E-40 T 29-03-2018 AM354_RS18285 106c4d81d191b0c1d0c5b037fcfe75c4 178 Hamap MF_00984 Single-stranded DNA-binding protein. 6 117 39.379 T 29-03-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 AM354_RS18285 106c4d81d191b0c1d0c5b037fcfe75c4 178 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 3 163 4.0E-58 T 29-03-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 AM354_RS08020 84d880c83f306e99e71698601406f706 935 PIRSF PIRSF000157 1 934 0.0 T 29-03-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AM354_RS08020 84d880c83f306e99e71698601406f706 935 Pfam PF02779 Transketolase, pyrimidine binding domain 592 787 8.2E-67 T 29-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AM354_RS08020 84d880c83f306e99e71698601406f706 935 SUPERFAMILY SSF52518 120 545 2.16E-88 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS08020 84d880c83f306e99e71698601406f706 935 Pfam PF00676 Dehydrogenase E1 component 221 512 7.2E-50 T 29-03-2018 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 Reactome: R-HSA-389661 AM354_RS08020 84d880c83f306e99e71698601406f706 935 SMART SM00861 593 786 4.4E-63 T 29-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AM354_RS08020 84d880c83f306e99e71698601406f706 935 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 12 49 9.5E-16 T 29-03-2018 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AM354_RS08020 84d880c83f306e99e71698601406f706 935 SUPERFAMILY SSF52518 576 793 1.47E-51 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS08020 84d880c83f306e99e71698601406f706 935 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 14 932 0.0 T 29-03-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AM354_RS08020 84d880c83f306e99e71698601406f706 935 Gene3D G3DSA:3.40.50.970 167 518 3.0E-92 T 29-03-2018 AM354_RS08020 84d880c83f306e99e71698601406f706 935 Gene3D G3DSA:1.10.287.1150 83 166 6.8E-24 T 29-03-2018 AM354_RS08020 84d880c83f306e99e71698601406f706 935 Gene3D G3DSA:3.40.50.970 593 801 2.4E-56 T 29-03-2018 AM354_RS08020 84d880c83f306e99e71698601406f706 935 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 791 932 7.5E-54 T 29-03-2018 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AM354_RS14065 5871ac460afc7436fa03cbadc581bdcb 622 Pfam PF02705 K+ potassium transporter 14 544 7.3E-207 T 29-03-2018 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 AM354_RS14065 5871ac460afc7436fa03cbadc581bdcb 622 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 5 622 33.559 T 29-03-2018 IPR023051 Potassium uptake protein, low affinity, Kup AM354_RS14065 5871ac460afc7436fa03cbadc581bdcb 622 TIGRFAM TIGR00794 kup: potassium uptake protein 97 550 8.8E-185 T 29-03-2018 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 AM354_RS02670 6e80f2ecd520ae4532c47c0b03706d62 174 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 11 163 7.6E-21 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS02670 6e80f2ecd520ae4532c47c0b03706d62 174 Gene3D G3DSA:1.10.10.10 93 163 2.2E-10 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS02670 6e80f2ecd520ae4532c47c0b03706d62 174 SUPERFAMILY SSF88946 9 100 6.67E-14 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS02670 6e80f2ecd520ae4532c47c0b03706d62 174 SUPERFAMILY SSF88659 107 163 3.92E-12 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS02670 6e80f2ecd520ae4532c47c0b03706d62 174 Pfam PF08281 Sigma-70, region 4 110 163 5.6E-15 T 29-03-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS02670 6e80f2ecd520ae4532c47c0b03706d62 174 Pfam PF04542 Sigma-70 region 2 15 80 7.7E-13 T 29-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS02670 6e80f2ecd520ae4532c47c0b03706d62 174 Gene3D G3DSA:1.10.1740.10 2 84 3.3E-16 T 29-03-2018 AM354_RS21015 bc4ee1c491b5c1a656bf7a5f97a400d0 158 Pfam PF04246 Positive regulator of sigma(E), RseC/MucC 8 139 8.9E-36 T 29-03-2018 IPR007359 Positive regulator of sigma(E), RseC/MucC AM354_RS21015 bc4ee1c491b5c1a656bf7a5f97a400d0 158 PIRSF PIRSF004923 1 151 2.3E-38 T 29-03-2018 IPR026268 Protein RseC AM354_RS15475 bec810edd15a3d6231484c71d0665f4e 660 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 11 96 1.6E-19 T 29-03-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077 AM354_RS15475 bec810edd15a3d6231484c71d0665f4e 660 SUPERFAMILY SSF51445 130 465 6.41E-127 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily AM354_RS15475 bec810edd15a3d6231484c71d0665f4e 660 SUPERFAMILY SSF51445 494 567 6.41E-127 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily AM354_RS15475 bec810edd15a3d6231484c71d0665f4e 660 SUPERFAMILY SSF81296 7 144 5.32E-45 T 29-03-2018 IPR014756 Immunoglobulin E-set AM354_RS15475 bec810edd15a3d6231484c71d0665f4e 660 Gene3D G3DSA:2.60.40.1180 576 659 1.4E-10 T 29-03-2018 AM354_RS15475 bec810edd15a3d6231484c71d0665f4e 660 Hamap MF_01248 Glycogen debranching enzyme [glgX]. 1 659 67.703 T 29-03-2018 IPR022844 Glycogen debranching enzyme, bacterial GO:0004553|GO:0005977 AM354_RS15475 bec810edd15a3d6231484c71d0665f4e 660 Gene3D G3DSA:3.20.20.80 134 574 2.0E-106 T 29-03-2018 AM354_RS15475 bec810edd15a3d6231484c71d0665f4e 660 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 7 657 2.0E-277 T 29-03-2018 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 AM354_RS15475 bec810edd15a3d6231484c71d0665f4e 660 SMART SM00642 170 560 1.1E-6 T 29-03-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AM354_RS15475 bec810edd15a3d6231484c71d0665f4e 660 Gene3D G3DSA:2.60.40.10 1 133 7.7E-43 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS16695 91284330558feeca01a3d001be0dbb5a 347 SUPERFAMILY SSF53067 9 152 8.89E-38 T 29-03-2018 AM354_RS16695 91284330558feeca01a3d001be0dbb5a 347 SUPERFAMILY SSF53067 153 340 3.69E-50 T 29-03-2018 AM354_RS16695 91284330558feeca01a3d001be0dbb5a 347 Pfam PF06723 MreB/Mbl protein 11 338 1.5E-150 T 29-03-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AM354_RS16695 91284330558feeca01a3d001be0dbb5a 347 Gene3D G3DSA:3.30.420.40 8 172 4.3E-42 T 29-03-2018 AM354_RS16695 91284330558feeca01a3d001be0dbb5a 347 Gene3D G3DSA:3.30.420.40 256 321 1.8E-8 T 29-03-2018 AM354_RS16695 91284330558feeca01a3d001be0dbb5a 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 72 95 1.2E-65 T 29-03-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AM354_RS16695 91284330558feeca01a3d001be0dbb5a 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 191 211 1.2E-65 T 29-03-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AM354_RS16695 91284330558feeca01a3d001be0dbb5a 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 52 70 1.2E-65 T 29-03-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AM354_RS16695 91284330558feeca01a3d001be0dbb5a 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 136 155 1.2E-65 T 29-03-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AM354_RS16695 91284330558feeca01a3d001be0dbb5a 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 304 330 1.2E-65 T 29-03-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AM354_RS16695 91284330558feeca01a3d001be0dbb5a 347 Gene3D G3DSA:3.90.640.10 190 255 8.8E-28 T 29-03-2018 AM354_RS16695 91284330558feeca01a3d001be0dbb5a 347 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 9 339 9.6E-171 T 29-03-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AM354_RS05950 b307315530c47b490ed0e38954d70813 87 TIGRFAM TIGR02183 GRXA: glutaredoxin, GrxA family 2 86 5.1E-51 T 29-03-2018 IPR011902 Glutaredoxin, GrxA GO:0009055|GO:0015035|GO:0045454 AM354_RS05950 b307315530c47b490ed0e38954d70813 87 Gene3D G3DSA:3.40.30.10 1 83 1.4E-20 T 29-03-2018 AM354_RS05950 b307315530c47b490ed0e38954d70813 87 SUPERFAMILY SSF52833 4 81 3.71E-20 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS05950 b307315530c47b490ed0e38954d70813 87 PRINTS PR00160 Glutaredoxin signature 52 65 8.1E-12 T 29-03-2018 IPR014025 Glutaredoxin subgroup AM354_RS05950 b307315530c47b490ed0e38954d70813 87 PRINTS PR00160 Glutaredoxin signature 66 79 8.1E-12 T 29-03-2018 IPR014025 Glutaredoxin subgroup AM354_RS05950 b307315530c47b490ed0e38954d70813 87 PRINTS PR00160 Glutaredoxin signature 3 21 8.1E-12 T 29-03-2018 IPR014025 Glutaredoxin subgroup AM354_RS05950 b307315530c47b490ed0e38954d70813 87 ProSitePatterns PS00195 Glutaredoxin active site. 5 20 - T 29-03-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 AM354_RS05950 b307315530c47b490ed0e38954d70813 87 Pfam PF00462 Glutaredoxin 4 69 6.9E-16 T 29-03-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 AM354_RS05655 2e67aa4983964f1a64632ed21be67e90 582 Gene3D G3DSA:1.20.1560.10 7 328 1.5E-64 T 29-03-2018 AM354_RS05655 2e67aa4983964f1a64632ed21be67e90 582 SMART SM00382 368 555 1.8E-18 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS05655 2e67aa4983964f1a64632ed21be67e90 582 TIGRFAM TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA 12 581 1.1E-265 T 29-03-2018 IPR011917 ABC transporter, lipid A export, MsbA GO:0005524|GO:0016021|GO:0034040 AM354_RS05655 2e67aa4983964f1a64632ed21be67e90 582 ProSitePatterns PS00211 ABC transporters family signature. 481 495 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS05655 2e67aa4983964f1a64632ed21be67e90 582 Pfam PF00664 ABC transporter transmembrane region 27 297 4.4E-58 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM354_RS05655 2e67aa4983964f1a64632ed21be67e90 582 Pfam PF00005 ABC transporter 359 509 1.3E-35 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS05655 2e67aa4983964f1a64632ed21be67e90 582 SUPERFAMILY SSF90123 14 327 6.28E-73 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM354_RS05655 2e67aa4983964f1a64632ed21be67e90 582 SUPERFAMILY SSF52540 333 580 1.92E-96 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS05655 2e67aa4983964f1a64632ed21be67e90 582 Gene3D G3DSA:3.40.50.300 329 582 2.7E-78 T 29-03-2018 AM354_RS21030 5b6effa31dbe8fde506ee35befaf4a39 325 Pfam PF00717 Peptidase S24-like 86 166 2.4E-20 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AM354_RS21030 5b6effa31dbe8fde506ee35befaf4a39 325 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 66 305 3.1E-43 T 29-03-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AM354_RS21030 5b6effa31dbe8fde506ee35befaf4a39 325 ProSitePatterns PS00501 Signal peptidases I serine active site. 89 96 - T 29-03-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 AM354_RS21030 5b6effa31dbe8fde506ee35befaf4a39 325 SUPERFAMILY SSF51306 78 324 6.8E-80 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AM354_RS21030 5b6effa31dbe8fde506ee35befaf4a39 325 ProSitePatterns PS00760 Signal peptidases I lysine active site. 146 158 - T 29-03-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 AM354_RS21030 5b6effa31dbe8fde506ee35befaf4a39 325 Gene3D G3DSA:2.10.109.10 76 321 3.8E-57 T 29-03-2018 AM354_RS21030 5b6effa31dbe8fde506ee35befaf4a39 325 ProSitePatterns PS00761 Signal peptidases I signature 3. 270 283 - T 29-03-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 AM354_RS21030 5b6effa31dbe8fde506ee35befaf4a39 325 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 144 156 1.0E-25 T 29-03-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AM354_RS21030 5b6effa31dbe8fde506ee35befaf4a39 325 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 265 284 1.0E-25 T 29-03-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AM354_RS21030 5b6effa31dbe8fde506ee35befaf4a39 325 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 80 96 1.0E-25 T 29-03-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AM354_RS21030 5b6effa31dbe8fde506ee35befaf4a39 325 Pfam PF10502 Signal peptidase, peptidase S26 257 303 1.3E-7 T 29-03-2018 IPR019533 Peptidase S26 AM354_RS23505 8ebdd93fa0b55ac57d336b9db55eb8df 75 PIRSF PIRSF006188 1 72 1.8E-35 T 29-03-2018 IPR009857 Uncharacterised protein family UPF0352 AM354_RS23505 8ebdd93fa0b55ac57d336b9db55eb8df 75 SUPERFAMILY SSF158651 1 75 7.72E-32 T 29-03-2018 IPR023202 YejL-like domain AM354_RS23505 8ebdd93fa0b55ac57d336b9db55eb8df 75 Gene3D G3DSA:1.10.3390.10 2 71 1.9E-35 T 29-03-2018 IPR023202 YejL-like domain AM354_RS23505 8ebdd93fa0b55ac57d336b9db55eb8df 75 Hamap MF_00816 UPF0352 protein YejL [yejL]. 1 71 23.349 T 29-03-2018 IPR009857 Uncharacterised protein family UPF0352 AM354_RS23505 8ebdd93fa0b55ac57d336b9db55eb8df 75 Pfam PF07208 Protein of unknown function (DUF1414) 26 69 7.6E-24 T 29-03-2018 IPR009857 Uncharacterised protein family UPF0352 AM354_RS23505 8ebdd93fa0b55ac57d336b9db55eb8df 75 ProDom PD027794 UPF0352 YEJL NTHI1007 CPS_2611 VF1649 VV1166 HD1515 VP2129 YPO1261/Y2923/YP0880 ECA2748 1 69 1.0E-31 T 29-03-2018 IPR009857 Uncharacterised protein family UPF0352 AM354_RS02540 827af338fb608103c2d794b5db59b98f 389 TIGRFAM TIGR03404 bicupin_oxalic: bicupin, oxalate decarboxylase family 30 381 6.6E-120 T 29-03-2018 IPR017774 Bicupin, oxalate decarboxylase/oxidase GO:0033609 KEGG: 00630+4.1.1.2|MetaCyc: PWY-6698 AM354_RS02540 827af338fb608103c2d794b5db59b98f 389 Gene3D G3DSA:2.60.120.10 218 388 2.6E-33 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS02540 827af338fb608103c2d794b5db59b98f 389 Gene3D G3DSA:2.60.120.10 38 213 1.0E-34 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS02540 827af338fb608103c2d794b5db59b98f 389 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 1 20 4.0E-5 T 29-03-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal AM354_RS02540 827af338fb608103c2d794b5db59b98f 389 SMART SM00835 233 375 2.1E-25 T 29-03-2018 IPR006045 Cupin 1 GO:0045735 AM354_RS02540 827af338fb608103c2d794b5db59b98f 389 SMART SM00835 54 197 6.1E-20 T 29-03-2018 IPR006045 Cupin 1 GO:0045735 AM354_RS02540 827af338fb608103c2d794b5db59b98f 389 Pfam PF00190 Cupin 234 368 8.6E-24 T 29-03-2018 IPR006045 Cupin 1 GO:0045735 AM354_RS02540 827af338fb608103c2d794b5db59b98f 389 Pfam PF00190 Cupin 66 189 8.1E-20 T 29-03-2018 IPR006045 Cupin 1 GO:0045735 AM354_RS02540 827af338fb608103c2d794b5db59b98f 389 SUPERFAMILY SSF51182 43 380 8.94E-86 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS10360 8d9f696fde5d625ba5bdefc96deab061 575 PIRSF PIRSF001423 8 573 5.9E-299 T 29-03-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AM354_RS10360 8d9f696fde5d625ba5bdefc96deab061 575 Pfam PF17392 Urocanase C-terminal domain 364 558 2.3E-93 T 29-03-2018 IPR035401 Urocanase, C-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AM354_RS10360 8d9f696fde5d625ba5bdefc96deab061 575 SUPERFAMILY SSF111326 20 567 4.71E-265 T 29-03-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AM354_RS10360 8d9f696fde5d625ba5bdefc96deab061 575 Pfam PF01175 Urocanase Rossmann-like domain 153 361 2.2E-88 T 29-03-2018 IPR035085 Urocanase, Rossmann-like domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AM354_RS10360 8d9f696fde5d625ba5bdefc96deab061 575 Gene3D G3DSA:3.40.1770.10 22 164 3.1E-29 T 29-03-2018 AM354_RS10360 8d9f696fde5d625ba5bdefc96deab061 575 Gene3D G3DSA:3.40.1770.10 208 567 4.1E-167 T 29-03-2018 AM354_RS10360 8d9f696fde5d625ba5bdefc96deab061 575 Hamap MF_00577 Urocanate hydratase [hutU]. 8 568 50.743 T 29-03-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AM354_RS10360 8d9f696fde5d625ba5bdefc96deab061 575 Pfam PF17391 Urocanase N-terminal domain 24 150 6.7E-63 T 29-03-2018 IPR035400 Urocanase, N-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AM354_RS10360 8d9f696fde5d625ba5bdefc96deab061 575 ProSitePatterns PS01233 Urocanase signature. 454 469 - T 29-03-2018 IPR023636 Urocanase conserved site GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AM354_RS10360 8d9f696fde5d625ba5bdefc96deab061 575 TIGRFAM TIGR01228 hutU: urocanate hydratase 23 566 0.0 T 29-03-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AM354_RS04800 87d40a5aeb3f1ab4cf003e67a650ab5c 212 Gene3D G3DSA:3.40.50.300 1 207 1.3E-48 T 29-03-2018 AM354_RS04800 87d40a5aeb3f1ab4cf003e67a650ab5c 212 Pfam PF02223 Thymidylate kinase 8 198 4.3E-56 T 29-03-2018 AM354_RS04800 87d40a5aeb3f1ab4cf003e67a650ab5c 212 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 2 198 2.7E-61 T 29-03-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 AM354_RS04800 87d40a5aeb3f1ab4cf003e67a650ab5c 212 SUPERFAMILY SSF52540 1 206 1.09E-50 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS04800 87d40a5aeb3f1ab4cf003e67a650ab5c 212 Hamap MF_00165 Thymidylate kinase [tmk]. 4 206 27.294 T 29-03-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 AM354_RS04800 87d40a5aeb3f1ab4cf003e67a650ab5c 212 ProSitePatterns PS01331 Thymidylate kinase signature. 95 107 - T 29-03-2018 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 AM354_RS23245 3a2abaf7893a3f382871dfdf09a79ea4 327 Pfam PF13378 Enolase C-terminal domain-like 131 276 2.4E-15 T 29-03-2018 IPR029065 Enolase C-terminal domain-like AM354_RS23245 3a2abaf7893a3f382871dfdf09a79ea4 327 SUPERFAMILY SSF51604 112 310 1.97E-50 T 29-03-2018 IPR029065 Enolase C-terminal domain-like AM354_RS23245 3a2abaf7893a3f382871dfdf09a79ea4 327 TIGRFAM TIGR01927 menC_gamma/gm+: o-succinylbenzoate synthase 11 311 8.0E-116 T 29-03-2018 AM354_RS23245 3a2abaf7893a3f382871dfdf09a79ea4 327 SMART SM00922 119 214 1.1E-8 T 29-03-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AM354_RS23245 3a2abaf7893a3f382871dfdf09a79ea4 327 Gene3D G3DSA:3.30.390.10 6 115 1.1E-16 T 29-03-2018 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM354_RS23245 3a2abaf7893a3f382871dfdf09a79ea4 327 Gene3D G3DSA:3.20.20.120 116 299 1.9E-38 T 29-03-2018 IPR029065 Enolase C-terminal domain-like AM354_RS23245 3a2abaf7893a3f382871dfdf09a79ea4 327 Hamap MF_00470 o-succinylbenzoate synthase [menC]. 8 324 25.048 T 29-03-2018 IPR010196 o-Succinylbenzoate synthase, MenC type1 GO:0000287|GO:0009234|GO:0016836 KEGG: 00010+4.2.1.11|KEGG: 00130+4.2.1.113|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-5837|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM354_RS23245 3a2abaf7893a3f382871dfdf09a79ea4 327 SUPERFAMILY SSF54826 6 103 5.44E-28 T 29-03-2018 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM354_RS02355 621703eb22bd1892a7815e6dcdaaf304 355 Gene3D G3DSA:3.30.360.10 138 345 6.3E-42 T 29-03-2018 AM354_RS02355 621703eb22bd1892a7815e6dcdaaf304 355 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 9 123 6.0E-24 T 29-03-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AM354_RS02355 621703eb22bd1892a7815e6dcdaaf304 355 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 137 242 1.1E-14 T 29-03-2018 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 AM354_RS02355 621703eb22bd1892a7815e6dcdaaf304 355 SUPERFAMILY SSF51735 4 202 3.88E-50 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS02355 621703eb22bd1892a7815e6dcdaaf304 355 Gene3D G3DSA:3.40.50.720 1 137 4.6E-40 T 29-03-2018 AM354_RS08135 77130a9b335481a427526a833cff2905 229 Pfam PF00072 Response regulator receiver domain 8 117 3.3E-27 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS08135 77130a9b335481a427526a833cff2905 229 SUPERFAMILY SSF52172 5 175 2.78E-38 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS08135 77130a9b335481a427526a833cff2905 229 SMART SM00862 151 227 4.2E-22 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS08135 77130a9b335481a427526a833cff2905 229 SMART SM00448 6 116 6.7E-36 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS08135 77130a9b335481a427526a833cff2905 229 Gene3D G3DSA:3.40.50.2300 2 125 2.1E-33 T 29-03-2018 AM354_RS08135 77130a9b335481a427526a833cff2905 229 Gene3D G3DSA:1.10.10.10 126 229 1.2E-29 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS08135 77130a9b335481a427526a833cff2905 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 227 3.3E-21 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS01725 9bdb16c5b2af6a0ecbac888ef9ffb138 201 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 51 3.8E-14 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS01725 9bdb16c5b2af6a0ecbac888ef9ffb138 201 SUPERFAMILY SSF48498 85 188 8.53E-7 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AM354_RS01725 9bdb16c5b2af6a0ecbac888ef9ffb138 201 Gene3D G3DSA:1.10.10.60 1 58 1.5E-15 T 29-03-2018 AM354_RS01725 9bdb16c5b2af6a0ecbac888ef9ffb138 201 Gene3D G3DSA:1.10.357.10 59 196 1.6E-17 T 29-03-2018 AM354_RS01725 9bdb16c5b2af6a0ecbac888ef9ffb138 201 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 7 20 4.4E-9 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS01725 9bdb16c5b2af6a0ecbac888ef9ffb138 201 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 27 50 4.4E-9 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS01725 9bdb16c5b2af6a0ecbac888ef9ffb138 201 SUPERFAMILY SSF46689 3 70 1.6E-16 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS09115 8d88e1e4ee80b42e2d08b97fede25b54 663 Gene3D G3DSA:1.10.287.70 573 640 1.1E-16 T 29-03-2018 AM354_RS09115 8d88e1e4ee80b42e2d08b97fede25b54 663 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 56 503 1.3E-134 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM354_RS09115 8d88e1e4ee80b42e2d08b97fede25b54 663 TIGRFAM TIGR02843 CyoB: cytochrome o ubiquinol oxidase, subunit I 2 647 0.0 T 29-03-2018 IPR014207 Cytochrome o ubiquinol oxidase, subunit I GO:0016682|GO:0055114 MetaCyc: PWY-7544 AM354_RS09115 8d88e1e4ee80b42e2d08b97fede25b54 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 124 148 2.2E-95 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM354_RS09115 8d88e1e4ee80b42e2d08b97fede25b54 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 461 482 2.2E-95 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM354_RS09115 8d88e1e4ee80b42e2d08b97fede25b54 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 198 216 2.2E-95 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM354_RS09115 8d88e1e4ee80b42e2d08b97fede25b54 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 97 120 2.2E-95 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM354_RS09115 8d88e1e4ee80b42e2d08b97fede25b54 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 278 299 2.2E-95 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM354_RS09115 8d88e1e4ee80b42e2d08b97fede25b54 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 383 401 2.2E-95 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM354_RS09115 8d88e1e4ee80b42e2d08b97fede25b54 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 411 430 2.2E-95 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM354_RS09115 8d88e1e4ee80b42e2d08b97fede25b54 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 227 246 2.2E-95 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM354_RS09115 8d88e1e4ee80b42e2d08b97fede25b54 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 47 72 2.2E-95 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM354_RS09115 8d88e1e4ee80b42e2d08b97fede25b54 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 166 178 2.2E-95 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM354_RS09115 8d88e1e4ee80b42e2d08b97fede25b54 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 324 339 2.2E-95 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM354_RS09115 8d88e1e4ee80b42e2d08b97fede25b54 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 348 369 2.2E-95 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM354_RS09115 8d88e1e4ee80b42e2d08b97fede25b54 663 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 280 334 - T 29-03-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM354_RS09115 8d88e1e4ee80b42e2d08b97fede25b54 663 Gene3D G3DSA:1.20.210.10 43 561 1.1E-184 T 29-03-2018 IPR023616 Cytochrome c oxidase-like, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM354_RS09115 8d88e1e4ee80b42e2d08b97fede25b54 663 SUPERFAMILY SSF81442 43 560 4.19E-179 T 29-03-2018 IPR023616 Cytochrome c oxidase-like, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM354_RS14160 1a55a36aa3357890ff5656c7dcbf6aba 933 SMART SM00482 690 897 5.2E-117 T 29-03-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS14160 1a55a36aa3357890ff5656c7dcbf6aba 933 Pfam PF01612 3'-5' exonuclease 334 520 1.0E-44 T 29-03-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AM354_RS14160 1a55a36aa3357890ff5656c7dcbf6aba 933 Pfam PF00476 DNA polymerase family A 556 931 6.5E-155 T 29-03-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS14160 1a55a36aa3357890ff5656c7dcbf6aba 933 SUPERFAMILY SSF53098 331 522 9.7E-57 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS14160 1a55a36aa3357890ff5656c7dcbf6aba 933 SUPERFAMILY SSF56672 526 933 3.34E-159 T 29-03-2018 AM354_RS14160 1a55a36aa3357890ff5656c7dcbf6aba 933 Gene3D G3DSA:1.20.1060.10 547 660 8.5E-31 T 29-03-2018 AM354_RS14160 1a55a36aa3357890ff5656c7dcbf6aba 933 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 9 170 1.6E-54 T 29-03-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 AM354_RS14160 1a55a36aa3357890ff5656c7dcbf6aba 933 Gene3D G3DSA:1.10.150.20 185 269 7.5E-25 T 29-03-2018 AM354_RS14160 1a55a36aa3357890ff5656c7dcbf6aba 933 ProSitePatterns PS00447 DNA polymerase family A signature. 758 777 - T 29-03-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS14160 1a55a36aa3357890ff5656c7dcbf6aba 933 SMART SM00474 334 521 1.1E-46 T 29-03-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AM354_RS14160 1a55a36aa3357890ff5656c7dcbf6aba 933 SUPERFAMILY SSF88723 7 170 1.2E-57 T 29-03-2018 IPR029060 PIN domain-like AM354_RS14160 1a55a36aa3357890ff5656c7dcbf6aba 933 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 171 271 2.8E-30 T 29-03-2018 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 AM354_RS14160 1a55a36aa3357890ff5656c7dcbf6aba 933 Gene3D G3DSA:3.30.70.370 661 753 3.1E-19 T 29-03-2018 AM354_RS14160 1a55a36aa3357890ff5656c7dcbf6aba 933 Gene3D G3DSA:3.30.70.370 758 933 3.0E-50 T 29-03-2018 AM354_RS14160 1a55a36aa3357890ff5656c7dcbf6aba 933 PRINTS PR00868 DNA-polymerase family A (pol I) signature 704 727 7.6E-80 T 29-03-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS14160 1a55a36aa3357890ff5656c7dcbf6aba 933 PRINTS PR00868 DNA-polymerase family A (pol I) signature 849 865 7.6E-80 T 29-03-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS14160 1a55a36aa3357890ff5656c7dcbf6aba 933 PRINTS PR00868 DNA-polymerase family A (pol I) signature 758 783 7.6E-80 T 29-03-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS14160 1a55a36aa3357890ff5656c7dcbf6aba 933 PRINTS PR00868 DNA-polymerase family A (pol I) signature 817 828 7.6E-80 T 29-03-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS14160 1a55a36aa3357890ff5656c7dcbf6aba 933 PRINTS PR00868 DNA-polymerase family A (pol I) signature 659 681 7.6E-80 T 29-03-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS14160 1a55a36aa3357890ff5656c7dcbf6aba 933 PRINTS PR00868 DNA-polymerase family A (pol I) signature 795 806 7.6E-80 T 29-03-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS14160 1a55a36aa3357890ff5656c7dcbf6aba 933 PRINTS PR00868 DNA-polymerase family A (pol I) signature 734 747 7.6E-80 T 29-03-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS14160 1a55a36aa3357890ff5656c7dcbf6aba 933 PRINTS PR00868 DNA-polymerase family A (pol I) signature 682 697 7.6E-80 T 29-03-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS14160 1a55a36aa3357890ff5656c7dcbf6aba 933 PRINTS PR00868 DNA-polymerase family A (pol I) signature 880 893 7.6E-80 T 29-03-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS14160 1a55a36aa3357890ff5656c7dcbf6aba 933 Gene3D G3DSA:3.40.50.1010 7 184 3.1E-68 T 29-03-2018 IPR029060 PIN domain-like AM354_RS14160 1a55a36aa3357890ff5656c7dcbf6aba 933 SMART SM00279 173 208 9.6E-14 T 29-03-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 AM354_RS14160 1a55a36aa3357890ff5656c7dcbf6aba 933 Gene3D G3DSA:3.30.420.10 324 546 2.4E-52 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS14160 1a55a36aa3357890ff5656c7dcbf6aba 933 SMART SM00475 7 268 6.5E-140 T 29-03-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 AM354_RS14160 1a55a36aa3357890ff5656c7dcbf6aba 933 TIGRFAM TIGR00593 pola: DNA polymerase I 9 933 2.7E-282 T 29-03-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS14160 1a55a36aa3357890ff5656c7dcbf6aba 933 SUPERFAMILY SSF47807 171 291 2.09E-31 T 29-03-2018 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 AM354_RS17600 d222cdfce3e6ba5605c8f07d267d7489 192 ProSitePatterns PS00397 Site-specific recombinases active site. 7 15 - T 29-03-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 AM354_RS17600 d222cdfce3e6ba5605c8f07d267d7489 192 ProSitePatterns PS00398 Site-specific recombinases signature 2. 63 75 - T 29-03-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 AM354_RS17600 d222cdfce3e6ba5605c8f07d267d7489 192 Pfam PF02796 Helix-turn-helix domain of resolvase 147 190 1.2E-11 T 29-03-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 AM354_RS17600 d222cdfce3e6ba5605c8f07d267d7489 192 Gene3D G3DSA:3.40.50.1390 1 114 7.8E-33 T 29-03-2018 AM354_RS17600 d222cdfce3e6ba5605c8f07d267d7489 192 Gene3D G3DSA:1.10.10.60 145 190 7.4E-6 T 29-03-2018 AM354_RS17600 d222cdfce3e6ba5605c8f07d267d7489 192 SUPERFAMILY SSF53041 3 144 9.68E-38 T 29-03-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AM354_RS17600 d222cdfce3e6ba5605c8f07d267d7489 192 SMART SM00857 4 145 1.3E-49 T 29-03-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AM354_RS17600 d222cdfce3e6ba5605c8f07d267d7489 192 Gene3D G3DSA:1.20.5.40 115 143 9.2E-15 T 29-03-2018 AM354_RS17600 d222cdfce3e6ba5605c8f07d267d7489 192 Pfam PF00239 Resolvase, N terminal domain 4 144 2.1E-38 T 29-03-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AM354_RS17600 d222cdfce3e6ba5605c8f07d267d7489 192 SUPERFAMILY SSF46689 147 187 1.34E-5 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS06450 bb2e033d45cb9fabd08fc64a505cec48 345 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 8 18 8.6E-7 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS06450 bb2e033d45cb9fabd08fc64a505cec48 345 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 18 28 8.6E-7 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS06450 bb2e033d45cb9fabd08fc64a505cec48 345 SUPERFAMILY SSF47413 6 64 1.05E-18 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS06450 bb2e033d45cb9fabd08fc64a505cec48 345 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 53 2.5E-19 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS06450 bb2e033d45cb9fabd08fc64a505cec48 345 Gene3D G3DSA:3.40.50.2300 63 172 2.8E-24 T 29-03-2018 AM354_RS06450 bb2e033d45cb9fabd08fc64a505cec48 345 ProSitePatterns PS00356 LacI-type HTH domain signature. 9 27 - T 29-03-2018 AM354_RS06450 bb2e033d45cb9fabd08fc64a505cec48 345 Gene3D G3DSA:3.40.50.2300 173 337 4.7E-44 T 29-03-2018 AM354_RS06450 bb2e033d45cb9fabd08fc64a505cec48 345 Pfam PF13377 Periplasmic binding protein-like domain 175 334 1.2E-34 T 29-03-2018 AM354_RS06450 bb2e033d45cb9fabd08fc64a505cec48 345 Gene3D G3DSA:1.10.260.40 21 62 3.7E-24 T 29-03-2018 AM354_RS06450 bb2e033d45cb9fabd08fc64a505cec48 345 Gene3D G3DSA:1.10.10.60 3 20 0.003 T 29-03-2018 AM354_RS06450 bb2e033d45cb9fabd08fc64a505cec48 345 SUPERFAMILY SSF53822 66 337 4.12E-79 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS06450 bb2e033d45cb9fabd08fc64a505cec48 345 SMART SM00354 6 76 3.6E-32 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS24145 d2bee0f8b95830446ab7b250824990cd 306 SMART SM00342 201 284 5.4E-21 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS24145 d2bee0f8b95830446ab7b250824990cd 306 Gene3D G3DSA:1.10.10.60 240 293 1.3E-12 T 29-03-2018 AM354_RS24145 d2bee0f8b95830446ab7b250824990cd 306 Pfam PF12833 Helix-turn-helix domain 207 283 5.8E-19 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS24145 d2bee0f8b95830446ab7b250824990cd 306 SUPERFAMILY SSF46689 185 235 2.82E-11 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS24145 d2bee0f8b95830446ab7b250824990cd 306 Gene3D G3DSA:1.10.10.60 23 239 2.3E-14 T 29-03-2018 AM354_RS24145 d2bee0f8b95830446ab7b250824990cd 306 Pfam PF06719 AraC-type transcriptional regulator N-terminus 22 172 2.8E-40 T 29-03-2018 IPR009594 Transcription regulator HTH, AraC, N-terminal AM354_RS24145 d2bee0f8b95830446ab7b250824990cd 306 SUPERFAMILY SSF46689 237 290 7.62E-10 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS15740 99bec5a45454a1808f32615a84021c7b 467 SUPERFAMILY SSF75615 114 207 1.03E-26 T 29-03-2018 AM354_RS15740 99bec5a45454a1808f32615a84021c7b 467 PIRSF PIRSF036426 1 464 5.5E-199 T 29-03-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM354_RS15740 99bec5a45454a1808f32615a84021c7b 467 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 221 235 - T 29-03-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM354_RS15740 99bec5a45454a1808f32615a84021c7b 467 Gene3D G3DSA:3.30.160.110 121 148 7.9E-17 T 29-03-2018 AM354_RS15740 99bec5a45454a1808f32615a84021c7b 467 Pfam PF10414 Sirohaem synthase dimerisation region 150 208 1.7E-18 T 29-03-2018 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM354_RS15740 99bec5a45454a1808f32615a84021c7b 467 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 216 448 4.2E-90 T 29-03-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0006779|GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM354_RS15740 99bec5a45454a1808f32615a84021c7b 467 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 206 5.1E-68 T 29-03-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM354_RS15740 99bec5a45454a1808f32615a84021c7b 467 Hamap MF_01646 Siroheme synthase [cysG]. 1 457 51.288 T 29-03-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM354_RS15740 99bec5a45454a1808f32615a84021c7b 467 Gene3D G3DSA:1.10.8.210 151 209 5.5E-19 T 29-03-2018 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM354_RS15740 99bec5a45454a1808f32615a84021c7b 467 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 218 426 1.2E-48 T 29-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM354_RS15740 99bec5a45454a1808f32615a84021c7b 467 Pfam PF14824 Sirohaem biosynthesis protein central 121 146 2.1E-8 T 29-03-2018 IPR028281 Siroheme synthase, central domain KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM354_RS15740 99bec5a45454a1808f32615a84021c7b 467 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 296 329 - T 29-03-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM354_RS15740 99bec5a45454a1808f32615a84021c7b 467 Gene3D G3DSA:3.40.50.720 3 120 6.9E-16 T 29-03-2018 AM354_RS15740 99bec5a45454a1808f32615a84021c7b 467 Gene3D G3DSA:3.30.950.10 341 465 4.0E-39 T 29-03-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM354_RS15740 99bec5a45454a1808f32615a84021c7b 467 Gene3D G3DSA:3.40.1010.10 215 340 3.7E-35 T 29-03-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM354_RS15740 99bec5a45454a1808f32615a84021c7b 467 SUPERFAMILY SSF51735 1 112 2.19E-23 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS15740 99bec5a45454a1808f32615a84021c7b 467 Pfam PF13241 Putative NAD(P)-binding 6 115 3.3E-23 T 29-03-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM354_RS15740 99bec5a45454a1808f32615a84021c7b 467 SUPERFAMILY SSF53790 215 456 4.97E-78 T 29-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM354_RS10615 1689ac2ef62cd4d421a3db46b8df086a 146 Hamap MF_00914 L-alanine exporter AlaE [alaE]. 1 145 33.752 T 29-03-2018 IPR010574 L-alanine exporter AlaE GO:0016021|GO:0034639 AM354_RS10615 1689ac2ef62cd4d421a3db46b8df086a 146 ProDom PD090021 MEMBRANE YGAW TRANSMEMBRANE INNER VV2263 Y3636 VC1828 VP1070 9 142 7.0E-51 T 29-03-2018 IPR010574 L-alanine exporter AlaE GO:0016021|GO:0034639 AM354_RS10615 1689ac2ef62cd4d421a3db46b8df086a 146 Pfam PF06610 L-alanine exporter 5 142 3.9E-69 T 29-03-2018 IPR010574 L-alanine exporter AlaE GO:0016021|GO:0034639 AM354_RS22945 555ee02d6c9ab348ce9531d855707ed8 373 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 9 278 1.2E-16 T 29-03-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 AM354_RS22945 555ee02d6c9ab348ce9531d855707ed8 373 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 197 213 - T 29-03-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AM354_RS22945 555ee02d6c9ab348ce9531d855707ed8 373 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 119 146 - T 29-03-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 AM354_RS22945 555ee02d6c9ab348ce9531d855707ed8 373 Pfam PF11890 Domain of unknown function (DUF3410) 289 369 1.0E-29 T 29-03-2018 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain GO:0046983 KEGG: 00260+1.1.1.29|KEGG: 00630+1.1.1.29|KEGG: 00680+1.1.1.29|KEGG: 00750+1.1.1.290|MetaCyc: PWY-181 AM354_RS22945 555ee02d6c9ab348ce9531d855707ed8 373 Hamap MF_01825 Erythronate-4-phosphate dehydrogenase [pdxB]. 1 357 46.618 T 29-03-2018 IPR020921 Erythronate-4-phosphate dehydrogenase GO:0005737|GO:0008615|GO:0033711|GO:0055114 KEGG: 00260+1.1.1.29|KEGG: 00630+1.1.1.29|KEGG: 00680+1.1.1.29|KEGG: 00750+1.1.1.290|MetaCyc: PWY-181 AM354_RS22945 555ee02d6c9ab348ce9531d855707ed8 373 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 110 242 3.8E-30 T 29-03-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AM354_RS22945 555ee02d6c9ab348ce9531d855707ed8 373 Gene3D G3DSA:3.40.50.720 105 259 4.4E-29 T 29-03-2018 AM354_RS22945 555ee02d6c9ab348ce9531d855707ed8 373 SUPERFAMILY SSF51735 91 245 1.65E-32 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS22945 555ee02d6c9ab348ce9531d855707ed8 373 SUPERFAMILY SSF52283 5 129 3.19E-17 T 29-03-2018 AM354_RS22945 555ee02d6c9ab348ce9531d855707ed8 373 Gene3D G3DSA:3.40.50.720 1 104 6.6E-20 T 29-03-2018 AM354_RS25195 a0529fd289de7a81598306e681869aab 71 Pfam PF05321 Haemolysin expression modulating protein 9 67 1.9E-29 T 29-03-2018 IPR007985 Haemolysin expression modulating, HHA AM354_RS25195 a0529fd289de7a81598306e681869aab 71 Gene3D G3DSA:1.20.1280.40 2 70 8.7E-27 T 29-03-2018 IPR007985 Haemolysin expression modulating, HHA AM354_RS25195 a0529fd289de7a81598306e681869aab 71 SUPERFAMILY SSF68989 4 69 1.12E-20 T 29-03-2018 IPR007985 Haemolysin expression modulating, HHA AM354_RS20695 86693cf49b7b4c19c3a748dc280860be 474 SUPERFAMILY SSF56954 6 470 3.14E-100 T 29-03-2018 AM354_RS20695 86693cf49b7b4c19c3a748dc280860be 474 Gene3D G3DSA:1.20.1600.10 24 473 8.8E-94 T 29-03-2018 AM354_RS20695 86693cf49b7b4c19c3a748dc280860be 474 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 16 467 2.1E-94 T 29-03-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 AM354_RS20695 86693cf49b7b4c19c3a748dc280860be 474 Pfam PF02321 Outer membrane efflux protein 70 257 8.5E-25 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 AM354_RS20695 86693cf49b7b4c19c3a748dc280860be 474 Pfam PF02321 Outer membrane efflux protein 287 458 1.1E-24 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 AM354_RS19035 96981ca7576dc39d8e1e8c88040ca366 220 SMART SM00862 145 216 5.3E-23 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS19035 96981ca7576dc39d8e1e8c88040ca366 220 SMART SM00448 1 112 3.2E-37 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS19035 96981ca7576dc39d8e1e8c88040ca366 220 Pfam PF00072 Response regulator receiver domain 3 112 1.4E-23 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS19035 96981ca7576dc39d8e1e8c88040ca366 220 Gene3D G3DSA:3.40.50.2300 1 119 5.1E-34 T 29-03-2018 AM354_RS19035 96981ca7576dc39d8e1e8c88040ca366 220 SUPERFAMILY SSF52172 1 172 9.08E-37 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS19035 96981ca7576dc39d8e1e8c88040ca366 220 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 216 2.1E-20 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS19035 96981ca7576dc39d8e1e8c88040ca366 220 Gene3D G3DSA:1.10.10.10 120 220 1.0E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS06130 c4d2a0a8c7a4b743c8d827af42c53edd 366 SUPERFAMILY SSF50952 23 363 5.1E-38 T 29-03-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 AM354_RS06130 c4d2a0a8c7a4b743c8d827af42c53edd 366 Pfam PF07995 Glucose / Sorbosone dehydrogenase 30 362 1.6E-133 T 29-03-2018 IPR012938 Glucose/Sorbosone dehydrogenase AM354_RS06130 c4d2a0a8c7a4b743c8d827af42c53edd 366 Gene3D G3DSA:2.120.10.30 269 359 1.2E-15 T 29-03-2018 IPR011042 Six-bladed beta-propeller, TolB-like AM354_RS06130 c4d2a0a8c7a4b743c8d827af42c53edd 366 Gene3D G3DSA:2.120.10.30 17 268 3.1E-44 T 29-03-2018 IPR011042 Six-bladed beta-propeller, TolB-like AM354_RS07645 e91d87234abf6858a40eb8c405f557e7 319 SUPERFAMILY SSF52283 1 127 8.72E-25 T 29-03-2018 AM354_RS07645 e91d87234abf6858a40eb8c405f557e7 319 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 114 288 3.7E-53 T 29-03-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AM354_RS07645 e91d87234abf6858a40eb8c405f557e7 319 SUPERFAMILY SSF51735 109 289 7.47E-50 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS07645 e91d87234abf6858a40eb8c405f557e7 319 Gene3D G3DSA:3.40.50.720 2 117 3.1E-26 T 29-03-2018 AM354_RS07645 e91d87234abf6858a40eb8c405f557e7 319 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 24 315 2.5E-12 T 29-03-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 AM354_RS07645 e91d87234abf6858a40eb8c405f557e7 319 Gene3D G3DSA:3.40.50.720 118 289 9.8E-50 T 29-03-2018 AM354_RS00025 87e9e4622de2013474fd948c21705b2a 271 Pfam PF01904 Protein of unknown function DUF72 20 248 1.9E-49 T 29-03-2018 IPR002763 Protein of unknown function DUF72 AM354_RS00025 87e9e4622de2013474fd948c21705b2a 271 SUPERFAMILY SSF117396 1 252 1.96E-62 T 29-03-2018 IPR002763 Protein of unknown function DUF72 AM354_RS00025 87e9e4622de2013474fd948c21705b2a 271 Gene3D G3DSA:3.20.20.410 1 255 1.0E-58 T 29-03-2018 IPR002763 Protein of unknown function DUF72 AM354_RS13690 95baecfe4b90a760783ed63decb48767 259 Pfam PF08241 Methyltransferase domain 52 139 1.8E-20 T 29-03-2018 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AM354_RS13690 95baecfe4b90a760783ed63decb48767 259 SUPERFAMILY SSF53335 12 236 8.05E-39 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS13690 95baecfe4b90a760783ed63decb48767 259 Gene3D G3DSA:3.40.50.150 12 246 1.6E-35 T 29-03-2018 AM354_RS21810 24b7b098b00d1c1b8377b9e92697dca7 460 Pfam PF00672 HAMP domain 181 229 3.4E-13 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM354_RS21810 24b7b098b00d1c1b8377b9e92697dca7 460 SUPERFAMILY SSF158472 182 230 5.62E-10 T 29-03-2018 AM354_RS21810 24b7b098b00d1c1b8377b9e92697dca7 460 Gene3D G3DSA:1.10.287.130 239 293 2.2E-14 T 29-03-2018 AM354_RS21810 24b7b098b00d1c1b8377b9e92697dca7 460 SMART SM00388 234 298 7.4E-15 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS21810 24b7b098b00d1c1b8377b9e92697dca7 460 Gene3D G3DSA:3.30.450.20 190 238 0.0015 T 29-03-2018 AM354_RS21810 24b7b098b00d1c1b8377b9e92697dca7 460 SMART SM00387 343 455 3.3E-32 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS21810 24b7b098b00d1c1b8377b9e92697dca7 460 SUPERFAMILY SSF55874 287 451 7.6E-39 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS21810 24b7b098b00d1c1b8377b9e92697dca7 460 Gene3D G3DSA:3.30.565.10 302 459 7.7E-38 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS21810 24b7b098b00d1c1b8377b9e92697dca7 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 415 433 4.1E-10 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS21810 24b7b098b00d1c1b8377b9e92697dca7 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 398 408 4.1E-10 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS21810 24b7b098b00d1c1b8377b9e92697dca7 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 380 394 4.1E-10 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS21810 24b7b098b00d1c1b8377b9e92697dca7 460 Pfam PF00512 His Kinase A (phospho-acceptor) domain 234 296 1.3E-13 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS21810 24b7b098b00d1c1b8377b9e92697dca7 460 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 343 451 4.3E-20 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS21810 24b7b098b00d1c1b8377b9e92697dca7 460 SMART SM00304 181 233 7.2E-15 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM354_RS21810 24b7b098b00d1c1b8377b9e92697dca7 460 SUPERFAMILY SSF47384 217 296 4.9E-15 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS12130 d65956edcd0dc08fdba153f110fce17e 156 SUPERFAMILY SSF55252 82 150 3.14E-21 T 29-03-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 AM354_RS12130 d65956edcd0dc08fdba153f110fce17e 156 Pfam PF02863 Arginine repressor, C-terminal domain 82 148 1.3E-23 T 29-03-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 AM354_RS12130 d65956edcd0dc08fdba153f110fce17e 156 Hamap MF_00173 Arginine repressor [argR]. 1 155 61.063 T 29-03-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 AM354_RS12130 d65956edcd0dc08fdba153f110fce17e 156 SUPERFAMILY SSF46785 3 77 1.27E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS12130 d65956edcd0dc08fdba153f110fce17e 156 ProDom PD007402 ARGININE REPRESSOR TRANSCRIPTION BIOSYNTHESIS DNA-BINDING REGULATION AMINO-ACID ARGR TRANSCRIPTIONAL FAMILY 89 153 3.0E-25 T 29-03-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 AM354_RS12130 d65956edcd0dc08fdba153f110fce17e 156 TIGRFAM TIGR01529 argR_whole: arginine repressor 11 149 1.9E-47 T 29-03-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 AM354_RS12130 d65956edcd0dc08fdba153f110fce17e 156 Pfam PF01316 Arginine repressor, DNA binding domain 6 74 1.0E-24 T 29-03-2018 IPR020900 Arginine repressor, DNA-binding domain GO:0003700|GO:0006355|GO:0006525 AM354_RS12130 d65956edcd0dc08fdba153f110fce17e 156 Gene3D G3DSA:3.30.1360.40 76 151 3.0E-27 T 29-03-2018 IPR024946 Arginine repressor C-terminal-like domain Reactome: R-HSA-4615885 AM354_RS12130 d65956edcd0dc08fdba153f110fce17e 156 Gene3D G3DSA:1.10.10.10 8 69 7.2E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS12130 d65956edcd0dc08fdba153f110fce17e 156 PRINTS PR01467 Bacterial arginine repressor signature 25 38 1.0E-24 T 29-03-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 AM354_RS12130 d65956edcd0dc08fdba153f110fce17e 156 PRINTS PR01467 Bacterial arginine repressor signature 42 57 1.0E-24 T 29-03-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 AM354_RS12130 d65956edcd0dc08fdba153f110fce17e 156 PRINTS PR01467 Bacterial arginine repressor signature 90 103 1.0E-24 T 29-03-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 AM354_RS12130 d65956edcd0dc08fdba153f110fce17e 156 PRINTS PR01467 Bacterial arginine repressor signature 121 136 1.0E-24 T 29-03-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 AM354_RS25530 b66a90f8e37fb4af62aba3e64f446b57 1323 Gene3D G3DSA:3.40.309.10 902 1100 5.5E-49 T 29-03-2018 AM354_RS25530 b66a90f8e37fb4af62aba3e64f446b57 1323 Pfam PF00171 Aldehyde dehydrogenase family 661 1106 3.1E-116 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM354_RS25530 b66a90f8e37fb4af62aba3e64f446b57 1323 SUPERFAMILY SSF81935 89 262 3.14E-66 T 29-03-2018 IPR024089 Proline dehydrogenase PutA, domain I/II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 AM354_RS25530 b66a90f8e37fb4af62aba3e64f446b57 1323 SUPERFAMILY SSF51730 263 619 1.65E-123 T 29-03-2018 IPR029041 FAD-linked oxidoreductase-like AM354_RS25530 b66a90f8e37fb4af62aba3e64f446b57 1323 TIGRFAM TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase 611 1113 5.4E-250 T 29-03-2018 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 GO:0003842|GO:0006561|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 AM354_RS25530 b66a90f8e37fb4af62aba3e64f446b57 1323 PIRSF PIRSF000197 75 1323 0.0 T 29-03-2018 IPR025703 Bifunctional protein PutA GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0010133 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 AM354_RS25530 b66a90f8e37fb4af62aba3e64f446b57 1323 Gene3D G3DSA:3.20.20.220 181 611 5.8E-110 T 29-03-2018 IPR029041 FAD-linked oxidoreductase-like AM354_RS25530 b66a90f8e37fb4af62aba3e64f446b57 1323 Gene3D G3DSA:1.10.1220.10 2 48 6.4E-6 T 29-03-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AM354_RS25530 b66a90f8e37fb4af62aba3e64f446b57 1323 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 911 922 - T 29-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AM354_RS25530 b66a90f8e37fb4af62aba3e64f446b57 1323 Gene3D G3DSA:1.20.5.550 90 138 5.7E-19 T 29-03-2018 IPR024090 Proline dehydrogenase PutA, domain I GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 AM354_RS25530 b66a90f8e37fb4af62aba3e64f446b57 1323 Pfam PF14850 DNA-binding domain of Proline dehydrogenase 149 260 1.6E-45 T 29-03-2018 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 AM354_RS25530 b66a90f8e37fb4af62aba3e64f446b57 1323 SUPERFAMILY SSF53720 631 1111 6.81E-129 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM354_RS25530 b66a90f8e37fb4af62aba3e64f446b57 1323 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 883 890 - T 29-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AM354_RS25530 b66a90f8e37fb4af62aba3e64f446b57 1323 Pfam PF01619 Proline dehydrogenase 271 570 1.6E-99 T 29-03-2018 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|Reactome: R-HSA-70688 AM354_RS25530 b66a90f8e37fb4af62aba3e64f446b57 1323 Gene3D G3DSA:3.40.605.10 651 901 3.5E-73 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM354_RS25530 b66a90f8e37fb4af62aba3e64f446b57 1323 SUPERFAMILY SSF47598 3 45 1.33E-10 T 29-03-2018 IPR010985 Ribbon-helix-helix GO:0006355 AM354_RS22915 76549db440af6f34cb8750fd8f9b0e35 326 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 109 315 1.1E-19 T 29-03-2018 IPR005064 Bordetella uptake gene GO:0030288 AM354_RS22915 76549db440af6f34cb8750fd8f9b0e35 326 SUPERFAMILY SSF53850 63 242 1.24E-9 T 29-03-2018 AM354_RS22915 76549db440af6f34cb8750fd8f9b0e35 326 PIRSF PIRSF017082 1 326 4.0E-80 T 29-03-2018 IPR005064 Bordetella uptake gene GO:0030288 AM354_RS22915 76549db440af6f34cb8750fd8f9b0e35 326 Gene3D G3DSA:3.40.190.10 124 235 1.1E-12 T 29-03-2018 AM354_RS20715 111c4c861371d30a0d0e81554e288ded 288 Pfam PF13460 NAD(P)H-binding 7 113 4.1E-14 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS20715 111c4c861371d30a0d0e81554e288ded 288 SUPERFAMILY SSF51735 1 273 9.85E-41 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS20715 111c4c861371d30a0d0e81554e288ded 288 Gene3D G3DSA:3.40.50.720 1 159 9.5E-19 T 29-03-2018 AM354_RS20715 111c4c861371d30a0d0e81554e288ded 288 Gene3D G3DSA:3.90.25.10 160 278 2.8E-17 T 29-03-2018 AM354_RS25290 270632093a9705dbfca256dbaa19146f 100 Pfam PF01381 Helix-turn-helix 45 88 4.8E-7 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM354_RS25290 270632093a9705dbfca256dbaa19146f 100 Gene3D G3DSA:1.10.260.40 39 94 1.2E-9 T 29-03-2018 AM354_RS25290 270632093a9705dbfca256dbaa19146f 100 SUPERFAMILY SSF47413 44 92 1.3E-9 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS22240 6e6f1b1215cdca2b0d12e7de84fceb3f 753 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 736 753 - T 29-03-2018 IPR010917 TonB-dependent receptor, conserved site AM354_RS22240 6e6f1b1215cdca2b0d12e7de84fceb3f 753 Pfam PF00593 TonB dependent receptor 233 752 1.5E-36 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS22240 6e6f1b1215cdca2b0d12e7de84fceb3f 753 Gene3D G3DSA:2.40.170.20 176 753 8.6E-47 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS22240 6e6f1b1215cdca2b0d12e7de84fceb3f 753 SUPERFAMILY SSF56935 66 544 1.62E-58 T 29-03-2018 AM354_RS22240 6e6f1b1215cdca2b0d12e7de84fceb3f 753 SUPERFAMILY SSF56935 572 753 1.62E-58 T 29-03-2018 AM354_RS22240 6e6f1b1215cdca2b0d12e7de84fceb3f 753 Pfam PF07715 TonB-dependent Receptor Plug Domain 67 166 4.6E-8 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS22240 6e6f1b1215cdca2b0d12e7de84fceb3f 753 Gene3D G3DSA:2.170.130.10 62 175 8.9E-10 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS11040 fefb0cf3271072bb2f15b9a708ef5ac6 325 Gene3D G3DSA:3.30.70.260 51 135 1.5E-4 T 29-03-2018 AM354_RS11040 fefb0cf3271072bb2f15b9a708ef5ac6 325 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 113 283 7.0E-23 T 29-03-2018 AM354_RS11040 fefb0cf3271072bb2f15b9a708ef5ac6 325 Gene3D G3DSA:1.10.150.210 136 170 4.9E-25 T 29-03-2018 IPR023190 Phosphoserine phosphatase, domain 2 GO:0004647|GO:0006564 KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3|Reactome: R-HSA-977347 AM354_RS11040 fefb0cf3271072bb2f15b9a708ef5ac6 325 Gene3D G3DSA:3.40.50.1000 171 316 1.1E-26 T 29-03-2018 IPR023214 HAD-like domain AM354_RS11040 fefb0cf3271072bb2f15b9a708ef5ac6 325 Pfam PF00702 haloacid dehalogenase-like hydrolase 113 285 3.1E-15 T 29-03-2018 AM354_RS11040 fefb0cf3271072bb2f15b9a708ef5ac6 325 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 98 316 1.1E-89 T 29-03-2018 AM354_RS11040 fefb0cf3271072bb2f15b9a708ef5ac6 325 SUPERFAMILY SSF56784 112 317 9.98E-48 T 29-03-2018 IPR023214 HAD-like domain AM354_RS22970 40fab5307cf4232b8020831130db982b 421 TIGRFAM TIGR01499 folC: bifunctional protein FolC 32 413 7.4E-108 T 29-03-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 AM354_RS22970 40fab5307cf4232b8020831130db982b 421 Gene3D G3DSA:3.40.1190.10 1 287 1.8E-80 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 AM354_RS22970 40fab5307cf4232b8020831130db982b 421 SUPERFAMILY SSF53623 13 284 3.43E-88 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 AM354_RS22970 40fab5307cf4232b8020831130db982b 421 SUPERFAMILY SSF53244 286 415 9.81E-34 T 29-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AM354_RS22970 40fab5307cf4232b8020831130db982b 421 ProSitePatterns PS01012 Folylpolyglutamate synthase signature 2. 144 159 - T 29-03-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 AM354_RS22970 40fab5307cf4232b8020831130db982b 421 Pfam PF08245 Mur ligase middle domain 54 197 1.5E-11 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 AM354_RS22970 40fab5307cf4232b8020831130db982b 421 PIRSF PIRSF001563 6 420 1.7E-111 T 29-03-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 AM354_RS22970 40fab5307cf4232b8020831130db982b 421 Gene3D G3DSA:3.90.190.20 288 420 4.0E-30 T 29-03-2018 AM354_RS15810 b3335682494ade3b641ca5a45b5ac449 241 Gene3D G3DSA:2.20.25.10 202 238 8.8E-6 T 29-03-2018 AM354_RS15810 b3335682494ade3b641ca5a45b5ac449 241 SMART SM00448 2 112 2.7E-27 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS15810 b3335682494ade3b641ca5a45b5ac449 241 SMART SM00850 143 238 2.2E-27 T 29-03-2018 IPR007492 LytTR DNA-binding domain GO:0003677 AM354_RS15810 b3335682494ade3b641ca5a45b5ac449 241 Gene3D G3DSA:3.40.50.2300 1 134 2.7E-30 T 29-03-2018 AM354_RS15810 b3335682494ade3b641ca5a45b5ac449 241 SUPERFAMILY SSF52172 1 123 9.68E-33 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS15810 b3335682494ade3b641ca5a45b5ac449 241 Pfam PF04397 LytTr DNA-binding domain 144 237 1.2E-22 T 29-03-2018 IPR007492 LytTR DNA-binding domain GO:0003677 AM354_RS15810 b3335682494ade3b641ca5a45b5ac449 241 Pfam PF00072 Response regulator receiver domain 5 112 1.2E-24 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS15810 b3335682494ade3b641ca5a45b5ac449 241 Gene3D G3DSA:2.40.50.40 135 200 1.1E-6 T 29-03-2018 AM354_RS00065 1273d819eaa5ae30a6c7c9fb08b78c9c 334 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 256 329 1.5E-34 T 29-03-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 AM354_RS00065 1273d819eaa5ae30a6c7c9fb08b78c9c 334 Gene3D G3DSA:3.40.50.300 21 184 1.9E-26 T 29-03-2018 AM354_RS00065 1273d819eaa5ae30a6c7c9fb08b78c9c 334 SMART SM00382 54 181 2.2E-11 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS00065 1273d819eaa5ae30a6c7c9fb08b78c9c 334 SUPERFAMILY SSF52540 23 255 3.65E-53 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS00065 1273d819eaa5ae30a6c7c9fb08b78c9c 334 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 253 333 7.0E-38 T 29-03-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 AM354_RS00065 1273d819eaa5ae30a6c7c9fb08b78c9c 334 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 334 185.98 T 29-03-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 AM354_RS00065 1273d819eaa5ae30a6c7c9fb08b78c9c 334 SUPERFAMILY SSF46785 260 331 2.31E-26 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS00065 1273d819eaa5ae30a6c7c9fb08b78c9c 334 Gene3D G3DSA:1.10.10.10 260 330 3.0E-35 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS00065 1273d819eaa5ae30a6c7c9fb08b78c9c 334 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 7 238 1.3E-117 T 29-03-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 AM354_RS00065 1273d819eaa5ae30a6c7c9fb08b78c9c 334 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 27 329 5.9E-149 T 29-03-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 AM354_RS00065 1273d819eaa5ae30a6c7c9fb08b78c9c 334 Gene3D G3DSA:1.10.8.60 187 257 2.1E-31 T 29-03-2018 AM354_RS17675 c8069cbd499a4c259ff93a241a8ba207 332 SUPERFAMILY SSF81345 8 331 3.79E-75 T 29-03-2018 IPR029022 ABC transporter, BtuC-like AM354_RS17675 c8069cbd499a4c259ff93a241a8ba207 332 Gene3D G3DSA:1.10.3470.10 3 332 1.3E-58 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS17675 c8069cbd499a4c259ff93a241a8ba207 332 Pfam PF01032 FecCD transport family 18 330 8.9E-86 T 29-03-2018 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 AM354_RS25035 e55c7cc44b0ad3df86033de079cbd7f6 267 PIRSF PIRSF029288 1 267 1.1E-77 T 29-03-2018 IPR009211 Predicted virulence protein, SciE type AM354_RS25035 e55c7cc44b0ad3df86033de079cbd7f6 267 Pfam PF07024 ImpE protein 143 261 2.2E-43 T 29-03-2018 IPR009211 Predicted virulence protein, SciE type AM354_RS25035 e55c7cc44b0ad3df86033de079cbd7f6 267 SUPERFAMILY SSF144059 2 265 1.83E-78 T 29-03-2018 AM354_RS05500 13b7e57fbc5bbfd2c8bcd161ef163085 708 PIRSF PIRSF037618 1 705 2.8E-299 T 29-03-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM354_RS05500 13b7e57fbc5bbfd2c8bcd161ef163085 708 Pfam PF02926 THUMP domain 23 152 8.1E-16 T 29-03-2018 IPR004114 THUMP domain GO:0003723 AM354_RS05500 13b7e57fbc5bbfd2c8bcd161ef163085 708 Gene3D G3DSA:3.30.750.80 393 494 1.4E-8 T 29-03-2018 AM354_RS05500 13b7e57fbc5bbfd2c8bcd161ef163085 708 SUPERFAMILY SSF53335 258 372 7.36E-41 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS05500 13b7e57fbc5bbfd2c8bcd161ef163085 708 SUPERFAMILY SSF53335 146 217 7.36E-41 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS05500 13b7e57fbc5bbfd2c8bcd161ef163085 708 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 306 312 - T 29-03-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AM354_RS05500 13b7e57fbc5bbfd2c8bcd161ef163085 708 Gene3D G3DSA:3.40.50.150 140 383 4.8E-33 T 29-03-2018 AM354_RS05500 13b7e57fbc5bbfd2c8bcd161ef163085 708 SUPERFAMILY SSF53335 397 703 3.96E-68 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS05500 13b7e57fbc5bbfd2c8bcd161ef163085 708 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 440 662 2.1E-19 T 29-03-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 AM354_RS05500 13b7e57fbc5bbfd2c8bcd161ef163085 708 Pfam PF01170 Putative RNA methylase family UPF0020 162 375 3.4E-62 T 29-03-2018 IPR000241 Putative RNA methylase domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM354_RS05500 13b7e57fbc5bbfd2c8bcd161ef163085 708 SMART SM00981 56 154 1.0E-18 T 29-03-2018 IPR004114 THUMP domain GO:0003723 AM354_RS05500 13b7e57fbc5bbfd2c8bcd161ef163085 708 Gene3D G3DSA:3.40.50.150 495 704 2.0E-41 T 29-03-2018 AM354_RS05500 13b7e57fbc5bbfd2c8bcd161ef163085 708 ProSitePatterns PS01261 Uncharacterized protein family UPF0020 signature. 195 206 - T 29-03-2018 IPR000241 Putative RNA methylase domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM354_RS05500 13b7e57fbc5bbfd2c8bcd161ef163085 708 Hamap MF_01858 Ribosomal RNA large subunit methyltransferase K/L [rlmL]. 4 704 32.67 T 29-03-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM354_RS12605 6922100e4bc28bd30b1bd5c619c283e3 550 Pfam PF00474 Sodium:solute symporter family 63 469 3.3E-128 T 29-03-2018 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 AM354_RS12605 6922100e4bc28bd30b1bd5c619c283e3 550 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 63 467 4.5E-63 T 29-03-2018 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 AM354_RS12605 6922100e4bc28bd30b1bd5c619c283e3 550 Hamap MF_01426 Cation/acetate symporter ActP [actP]. 1 550 51.503 T 29-03-2018 IPR014083 Cation/acetate symporter ActP GO:0005887|GO:0015123|GO:0043879 AM354_RS12605 6922100e4bc28bd30b1bd5c619c283e3 550 TIGRFAM TIGR02711 symport_actP: cation/acetate symporter ActP 5 550 0.0 T 29-03-2018 IPR014083 Cation/acetate symporter ActP GO:0005887|GO:0015123|GO:0043879 AM354_RS12605 6922100e4bc28bd30b1bd5c619c283e3 550 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 178 203 - T 29-03-2018 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 AM354_RS12605 6922100e4bc28bd30b1bd5c619c283e3 550 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 451 471 - T 29-03-2018 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 AM354_RS14190 026f9a58ef2320e0ed15a67d6f1579c7 470 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 227 242 - T 29-03-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AM354_RS14190 026f9a58ef2320e0ed15a67d6f1579c7 470 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 165 178 - T 29-03-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AM354_RS14190 026f9a58ef2320e0ed15a67d6f1579c7 470 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 433 450 8.0E-11 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AM354_RS14190 026f9a58ef2320e0ed15a67d6f1579c7 470 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 450 470 8.0E-11 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AM354_RS14190 026f9a58ef2320e0ed15a67d6f1579c7 470 Pfam PF00158 Sigma-54 interaction domain 141 307 7.9E-70 T 29-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AM354_RS14190 026f9a58ef2320e0ed15a67d6f1579c7 470 Gene3D G3DSA:3.40.50.2300 2 137 9.3E-36 T 29-03-2018 AM354_RS14190 026f9a58ef2320e0ed15a67d6f1579c7 470 SMART SM00382 161 312 2.1E-12 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS14190 026f9a58ef2320e0ed15a67d6f1579c7 470 Pfam PF02954 Bacterial regulatory protein, Fis family 428 467 1.7E-15 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AM354_RS14190 026f9a58ef2320e0ed15a67d6f1579c7 470 TIGRFAM TIGR01818 ntrC: nitrogen regulation protein NR(I) 6 467 1.8E-245 T 29-03-2018 IPR010114 Signal transduction response regulator, nitrogen regulation NR(I) GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0006808 AM354_RS14190 026f9a58ef2320e0ed15a67d6f1579c7 470 SUPERFAMILY SSF52172 6 186 7.97E-46 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS14190 026f9a58ef2320e0ed15a67d6f1579c7 470 Pfam PF00072 Response regulator receiver domain 6 115 2.2E-30 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS14190 026f9a58ef2320e0ed15a67d6f1579c7 470 SUPERFAMILY SSF46689 381 470 5.73E-25 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS14190 026f9a58ef2320e0ed15a67d6f1579c7 470 Gene3D G3DSA:1.10.8.60 314 383 1.0E-22 T 29-03-2018 AM354_RS14190 026f9a58ef2320e0ed15a67d6f1579c7 470 SMART SM00448 4 115 9.0E-36 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS14190 026f9a58ef2320e0ed15a67d6f1579c7 470 Gene3D G3DSA:1.10.10.60 384 470 9.9E-27 T 29-03-2018 AM354_RS14190 026f9a58ef2320e0ed15a67d6f1579c7 470 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 354 363 - T 29-03-2018 IPR025944 Sigma-54 interaction domain, conserved site AM354_RS14190 026f9a58ef2320e0ed15a67d6f1579c7 470 Gene3D G3DSA:3.40.50.300 138 313 2.5E-29 T 29-03-2018 AM354_RS14190 026f9a58ef2320e0ed15a67d6f1579c7 470 SUPERFAMILY SSF52540 140 383 3.55E-74 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS21485 5428c75fba3a28f8568456a6dd9cda90 183 Pfam PF03592 Terminase small subunit 7 160 7.4E-27 T 29-03-2018 IPR005335 Terminase small subunit GO:0006323 AM354_RS19910 7cba4d03e1b181c08a0bf3ce3e8a887f 302 Gene3D G3DSA:3.40.190.10 178 262 2.1E-25 T 29-03-2018 AM354_RS19910 7cba4d03e1b181c08a0bf3ce3e8a887f 302 Pfam PF03466 LysR substrate binding domain 88 291 4.1E-43 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS19910 7cba4d03e1b181c08a0bf3ce3e8a887f 302 Gene3D G3DSA:3.40.190.10 89 177 1.8E-16 T 29-03-2018 AM354_RS19910 7cba4d03e1b181c08a0bf3ce3e8a887f 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 9.5E-16 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS19910 7cba4d03e1b181c08a0bf3ce3e8a887f 302 SUPERFAMILY SSF46785 5 111 3.64E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS19910 7cba4d03e1b181c08a0bf3ce3e8a887f 302 SUPERFAMILY SSF53850 88 295 1.12E-45 T 29-03-2018 AM354_RS19910 7cba4d03e1b181c08a0bf3ce3e8a887f 302 Gene3D G3DSA:1.10.10.10 3 82 4.0E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS11255 121fbfd8b3da79cbaad5c479789add95 357 SUPERFAMILY SSF54593 11 325 5.09E-44 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS11255 121fbfd8b3da79cbaad5c479789add95 357 Gene3D G3DSA:4.10.1270.10 298 357 4.7E-32 T 29-03-2018 AM354_RS11255 121fbfd8b3da79cbaad5c479789add95 357 Gene3D G3DSA:3.10.180.10 13 145 3.8E-19 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS11255 121fbfd8b3da79cbaad5c479789add95 357 Gene3D G3DSA:3.10.180.10 146 297 3.1E-24 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS11255 121fbfd8b3da79cbaad5c479789add95 357 TIGRFAM TIGR02295 HpaD: 3,4-dihydroxyphenylacetate 2,3-dioxygenase 14 309 4.0E-128 T 29-03-2018 IPR011981 3,4-dihydroxyphenylacetate 2,3-dioxygenase, Mn/Fe-type AM354_RS11255 121fbfd8b3da79cbaad5c479789add95 357 ProSitePatterns PS00082 Extradiol ring-cleavage dioxygenases signature. 246 267 - T 29-03-2018 IPR000486 Extradiol ring-cleavage dioxygenase, class I /II GO:0003824|GO:0006725|GO:0008198|GO:0055114 AM354_RS11255 121fbfd8b3da79cbaad5c479789add95 357 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 19 106 2.1E-6 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AM354_RS11255 121fbfd8b3da79cbaad5c479789add95 357 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 152 268 2.4E-11 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AM354_RS14260 31979687d4d463ed2979725159c8f1c2 91 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 62 16.087 T 29-03-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM354_RS14260 31979687d4d463ed2979725159c8f1c2 91 Pfam PF01192 RNA polymerase Rpb6 10 60 9.6E-17 T 29-03-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 AM354_RS14260 31979687d4d463ed2979725159c8f1c2 91 SMART SM01409 8 61 1.6E-16 T 29-03-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 AM354_RS14260 31979687d4d463ed2979725159c8f1c2 91 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 59 2.9E-29 T 29-03-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM354_RS14260 31979687d4d463ed2979725159c8f1c2 91 SUPERFAMILY SSF63562 1 79 1.15E-25 T 29-03-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 AM354_RS14260 31979687d4d463ed2979725159c8f1c2 91 Gene3D G3DSA:3.90.940.10 1 91 3.5E-28 T 29-03-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 AM354_RS04025 f00d31db4ed0d0e9dfb9919d2ce0706e 146 Pfam PF00959 Phage lysozyme 28 138 2.3E-20 T 29-03-2018 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 AM354_RS04025 f00d31db4ed0d0e9dfb9919d2ce0706e 146 SUPERFAMILY SSF53955 1 146 2.1E-47 T 29-03-2018 IPR023346 Lysozyme-like domain AM354_RS04025 f00d31db4ed0d0e9dfb9919d2ce0706e 146 Gene3D G3DSA:1.10.530.40 1 146 1.0E-50 T 29-03-2018 IPR023347 Lysozyme domain GO:0003796 AM354_RS00100 aa2bb455de2010becb9f9245bd8bae20 480 Gene3D G3DSA:3.40.1380.20 328 480 4.4E-41 T 29-03-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM354_RS00100 aa2bb455de2010becb9f9245bd8bae20 480 Pfam PF02887 Pyruvate kinase, alpha/beta domain 363 477 1.4E-27 T 29-03-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM354_RS00100 aa2bb455de2010becb9f9245bd8bae20 480 PRINTS PR01050 Pyruvate kinase family signature 300 318 2.0E-51 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM354_RS00100 aa2bb455de2010becb9f9245bd8bae20 480 PRINTS PR01050 Pyruvate kinase family signature 63 79 2.0E-51 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM354_RS00100 aa2bb455de2010becb9f9245bd8bae20 480 PRINTS PR01050 Pyruvate kinase family signature 250 274 2.0E-51 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM354_RS00100 aa2bb455de2010becb9f9245bd8bae20 480 PRINTS PR01050 Pyruvate kinase family signature 190 204 2.0E-51 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM354_RS00100 aa2bb455de2010becb9f9245bd8bae20 480 PRINTS PR01050 Pyruvate kinase family signature 275 299 2.0E-51 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM354_RS00100 aa2bb455de2010becb9f9245bd8bae20 480 PRINTS PR01050 Pyruvate kinase family signature 319 335 2.0E-51 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM354_RS00100 aa2bb455de2010becb9f9245bd8bae20 480 PRINTS PR01050 Pyruvate kinase family signature 223 249 2.0E-51 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM354_RS00100 aa2bb455de2010becb9f9245bd8bae20 480 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 6 479 9.6E-173 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM354_RS00100 aa2bb455de2010becb9f9245bd8bae20 480 SUPERFAMILY SSF50800 74 168 6.98E-25 T 29-03-2018 IPR011037 Pyruvate kinase-like, insert domain AM354_RS00100 aa2bb455de2010becb9f9245bd8bae20 480 SUPERFAMILY SSF51621 171 344 2.13E-88 T 29-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AM354_RS00100 aa2bb455de2010becb9f9245bd8bae20 480 SUPERFAMILY SSF51621 4 79 2.13E-88 T 29-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AM354_RS00100 aa2bb455de2010becb9f9245bd8bae20 480 ProSitePatterns PS00110 Pyruvate kinase active site signature. 218 230 - T 29-03-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM354_RS00100 aa2bb455de2010becb9f9245bd8bae20 480 SUPERFAMILY SSF52935 329 479 2.75E-38 T 29-03-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM354_RS00100 aa2bb455de2010becb9f9245bd8bae20 480 Gene3D G3DSA:3.20.20.60 174 327 7.1E-55 T 29-03-2018 AM354_RS00100 aa2bb455de2010becb9f9245bd8bae20 480 Gene3D G3DSA:3.20.20.60 6 173 3.9E-36 T 29-03-2018 AM354_RS00100 aa2bb455de2010becb9f9245bd8bae20 480 Pfam PF00224 Pyruvate kinase, barrel domain 6 344 1.4E-132 T 29-03-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM354_RS10540 ec632d565397fedfa0a2a1c46df80c98 384 SUPERFAMILY SSF52490 12 207 3.66E-69 T 29-03-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AM354_RS10540 ec632d565397fedfa0a2a1c46df80c98 384 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 13 172 2.0E-41 T 29-03-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AM354_RS10540 ec632d565397fedfa0a2a1c46df80c98 384 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 8 344 38.017 T 29-03-2018 IPR000158 Cell division protein FtsZ GO:0005525 AM354_RS10540 ec632d565397fedfa0a2a1c46df80c98 384 SMART SM00864 12 204 2.2E-111 T 29-03-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AM354_RS10540 ec632d565397fedfa0a2a1c46df80c98 384 Pfam PF12327 FtsZ family, C-terminal domain 221 315 5.7E-37 T 29-03-2018 IPR024757 Cell division protein FtsZ, C-terminal AM354_RS10540 ec632d565397fedfa0a2a1c46df80c98 384 Gene3D G3DSA:3.30.1330.20 214 324 2.4E-44 T 29-03-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-1445148|Reactome: R-HSA-190840|Reactome: R-HSA-190861|Reactome: R-HSA-2132295|Reactome: R-HSA-2467813|Reactome: R-HSA-2500257|Reactome: R-HSA-3371497|Reactome: R-HSA-380320|Reactome: R-HSA-437239|Reactome: R-HSA-5617833|Reactome: R-HSA-5626467|Reactome: R-HSA-5663220|Reactome: R-HSA-6807878|Reactome: R-HSA-6811434|Reactome: R-HSA-6811436|Reactome: R-HSA-68877|Reactome: R-HSA-8852276|Reactome: R-HSA-8955332|Reactome: R-HSA-983189 AM354_RS10540 ec632d565397fedfa0a2a1c46df80c98 384 PRINTS PR00423 Cell division protein FtsZ signature 188 210 1.4E-51 T 29-03-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AM354_RS10540 ec632d565397fedfa0a2a1c46df80c98 384 PRINTS PR00423 Cell division protein FtsZ signature 97 117 1.4E-51 T 29-03-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AM354_RS10540 ec632d565397fedfa0a2a1c46df80c98 384 PRINTS PR00423 Cell division protein FtsZ signature 125 146 1.4E-51 T 29-03-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AM354_RS10540 ec632d565397fedfa0a2a1c46df80c98 384 PRINTS PR00423 Cell division protein FtsZ signature 211 232 1.4E-51 T 29-03-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AM354_RS10540 ec632d565397fedfa0a2a1c46df80c98 384 ProSitePatterns PS01135 FtsZ protein signature 2. 96 117 - T 29-03-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 AM354_RS10540 ec632d565397fedfa0a2a1c46df80c98 384 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 7 336 1.9E-141 T 29-03-2018 IPR000158 Cell division protein FtsZ GO:0005525 AM354_RS10540 ec632d565397fedfa0a2a1c46df80c98 384 SMART SM00865 206 324 8.3E-56 T 29-03-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-1445148|Reactome: R-HSA-190840|Reactome: R-HSA-190861|Reactome: R-HSA-2132295|Reactome: R-HSA-2467813|Reactome: R-HSA-2500257|Reactome: R-HSA-3371497|Reactome: R-HSA-380320|Reactome: R-HSA-437239|Reactome: R-HSA-5617833|Reactome: R-HSA-5626467|Reactome: R-HSA-5663220|Reactome: R-HSA-6807878|Reactome: R-HSA-6811434|Reactome: R-HSA-6811436|Reactome: R-HSA-68877|Reactome: R-HSA-8852276|Reactome: R-HSA-8955332|Reactome: R-HSA-983189 AM354_RS10540 ec632d565397fedfa0a2a1c46df80c98 384 ProSitePatterns PS01134 FtsZ protein signature 1. 43 77 - T 29-03-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 AM354_RS10540 ec632d565397fedfa0a2a1c46df80c98 384 SUPERFAMILY SSF55307 203 319 2.98E-42 T 29-03-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 AM354_RS10540 ec632d565397fedfa0a2a1c46df80c98 384 Gene3D G3DSA:3.40.50.1440 8 213 3.0E-42 T 29-03-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AM354_RS26030 1df4fe5b9bb3808ece1ca1bb7131f422 102 SMART SM01022 5 101 2.0E-28 T 29-03-2018 IPR007374 ASCH domain AM354_RS26030 1df4fe5b9bb3808ece1ca1bb7131f422 102 Hamap MF_00684 UPF0267 protein YqfB [yqfB]. 1 102 31.883 T 29-03-2018 IPR008314 Uncharacterised conserved protein UCP029143 AM354_RS26030 1df4fe5b9bb3808ece1ca1bb7131f422 102 Gene3D G3DSA:2.30.130.30 1 101 7.3E-21 T 29-03-2018 AM354_RS26030 1df4fe5b9bb3808ece1ca1bb7131f422 102 Pfam PF04266 ASCH domain 6 98 6.7E-16 T 29-03-2018 IPR007374 ASCH domain AM354_RS26030 1df4fe5b9bb3808ece1ca1bb7131f422 102 SUPERFAMILY SSF88697 2 99 1.99E-34 T 29-03-2018 IPR015947 PUA-like domain AM354_RS26030 1df4fe5b9bb3808ece1ca1bb7131f422 102 PIRSF PIRSF029143 1 102 4.6E-48 T 29-03-2018 IPR008314 Uncharacterised conserved protein UCP029143 AM354_RS08740 1005d8f7b0fccbb7ba761f0a5928cb1e 255 Pfam PF00975 Thioesterase domain 25 243 3.7E-34 T 29-03-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 AM354_RS08740 1005d8f7b0fccbb7ba761f0a5928cb1e 255 SUPERFAMILY SSF53474 13 245 1.64E-38 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS08740 1005d8f7b0fccbb7ba761f0a5928cb1e 255 Gene3D G3DSA:3.40.50.1820 15 247 1.5E-26 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS19030 67b222f0169f4e4f7b9595d6b16ae343 264 PIRSF PIRSF000388 1 264 8.5E-101 T 29-03-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 AM354_RS19030 67b222f0169f4e4f7b9595d6b16ae343 264 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 4 263 42.155 T 29-03-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 AM354_RS19030 67b222f0169f4e4f7b9595d6b16ae343 264 Gene3D G3DSA:3.20.20.60 1 263 3.8E-85 T 29-03-2018 AM354_RS19030 67b222f0169f4e4f7b9595d6b16ae343 264 SUPERFAMILY SSF51621 4 263 3.27E-106 T 29-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AM354_RS19030 67b222f0169f4e4f7b9595d6b16ae343 264 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 1 263 2.9E-121 T 29-03-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 AM354_RS19030 67b222f0169f4e4f7b9595d6b16ae343 264 Pfam PF02548 Ketopantoate hydroxymethyltransferase 4 258 6.9E-108 T 29-03-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 AM354_RS12465 1a92d659a65a8724872333e518caf86d 97 SUPERFAMILY SSF50129 1 96 1.49E-31 T 29-03-2018 IPR011032 GroES-like AM354_RS12465 1a92d659a65a8724872333e518caf86d 97 Gene3D G3DSA:2.30.33.40 1 96 1.7E-32 T 29-03-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AM354_RS12465 1a92d659a65a8724872333e518caf86d 97 SMART SM00883 2 95 2.8E-48 T 29-03-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AM354_RS12465 1a92d659a65a8724872333e518caf86d 97 PRINTS PR00297 10kDa chaperonin signature 3 18 1.2E-27 T 29-03-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AM354_RS12465 1a92d659a65a8724872333e518caf86d 97 PRINTS PR00297 10kDa chaperonin signature 60 72 1.2E-27 T 29-03-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AM354_RS12465 1a92d659a65a8724872333e518caf86d 97 PRINTS PR00297 10kDa chaperonin signature 25 46 1.2E-27 T 29-03-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AM354_RS12465 1a92d659a65a8724872333e518caf86d 97 PRINTS PR00297 10kDa chaperonin signature 82 95 1.2E-27 T 29-03-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AM354_RS12465 1a92d659a65a8724872333e518caf86d 97 Pfam PF00166 Chaperonin 10 Kd subunit 3 95 8.2E-30 T 29-03-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AM354_RS12465 1a92d659a65a8724872333e518caf86d 97 Hamap MF_00580 10 kDa chaperonin [groS]. 2 96 23.904 T 29-03-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AM354_RS12465 1a92d659a65a8724872333e518caf86d 97 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 29-03-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 AM354_RS11275 4f91338bef912bc039c55c03e9a29462 150 SMART SM00347 22 122 1.4E-21 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM354_RS11275 4f91338bef912bc039c55c03e9a29462 150 SUPERFAMILY SSF46785 4 135 2.93E-27 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS11275 4f91338bef912bc039c55c03e9a29462 150 TIGRFAM TIGR02337 HpaR: homoprotocatechuate degradation operon regulator, HpaR 4 133 3.9E-55 T 29-03-2018 IPR012712 Homoprotocatechuate degradation transcriptional regulator HpaR GO:0003677|GO:0010124|GO:0045892 AM354_RS11275 4f91338bef912bc039c55c03e9a29462 150 Pfam PF01047 MarR family 29 86 2.8E-10 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM354_RS11275 4f91338bef912bc039c55c03e9a29462 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 63 78 1.6E-5 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM354_RS11275 4f91338bef912bc039c55c03e9a29462 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 82 98 1.6E-5 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM354_RS11275 4f91338bef912bc039c55c03e9a29462 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 112 132 1.6E-5 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM354_RS11275 4f91338bef912bc039c55c03e9a29462 150 Gene3D G3DSA:1.10.10.10 1 133 2.1E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS14775 f789807c8a6624a1a42e88d016fc5b8a 616 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 29-03-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AM354_RS14775 f789807c8a6624a1a42e88d016fc5b8a 616 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 509 520 - T 29-03-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AM354_RS14775 f789807c8a6624a1a42e88d016fc5b8a 616 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 610 45.213 T 29-03-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AM354_RS14775 f789807c8a6624a1a42e88d016fc5b8a 616 Pfam PF00920 Dehydratase family 34 607 9.5E-219 T 29-03-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AM354_RS14775 f789807c8a6624a1a42e88d016fc5b8a 616 Gene3D G3DSA:3.40.50.2300 54 178 4.6E-4 T 29-03-2018 AM354_RS14775 f789807c8a6624a1a42e88d016fc5b8a 616 SUPERFAMILY SSF52016 421 610 4.71E-60 T 29-03-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel AM354_RS14775 f789807c8a6624a1a42e88d016fc5b8a 616 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 610 8.4E-266 T 29-03-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AM354_RS14775 f789807c8a6624a1a42e88d016fc5b8a 616 SUPERFAMILY SSF143975 3 420 7.85E-134 T 29-03-2018 AM354_RS02575 823b2e258d7b2db875df1c8edee4aec1 424 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 305 329 6.5E-12 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AM354_RS02575 823b2e258d7b2db875df1c8edee4aec1 424 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 401 421 6.5E-12 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AM354_RS02575 823b2e258d7b2db875df1c8edee4aec1 424 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 271 292 6.5E-12 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AM354_RS02575 823b2e258d7b2db875df1c8edee4aec1 424 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 76 96 6.5E-12 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AM354_RS02575 823b2e258d7b2db875df1c8edee4aec1 424 Gene3D G3DSA:2.40.50.100 66 172 1.2E-5 T 29-03-2018 AM354_RS02575 823b2e258d7b2db875df1c8edee4aec1 424 Gene3D G3DSA:2.40.50.100 250 394 7.3E-5 T 29-03-2018 AM354_RS02575 823b2e258d7b2db875df1c8edee4aec1 424 Pfam PF13437 HlyD family secretion protein 260 352 2.0E-13 T 29-03-2018 AM354_RS02575 823b2e258d7b2db875df1c8edee4aec1 424 ProSitePatterns PS00543 HlyD family secretion proteins signature. 386 408 - T 29-03-2018 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 AM354_RS04345 896aa8c8f8b8d26cfb77a3c3a4630e3f 420 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 320 416 7.0E-25 T 29-03-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AM354_RS04345 896aa8c8f8b8d26cfb77a3c3a4630e3f 420 PIRSF PIRSF000445 1 420 3.0E-154 T 29-03-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AM354_RS04345 896aa8c8f8b8d26cfb77a3c3a4630e3f 420 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 99 122 - T 29-03-2018 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AM354_RS04345 896aa8c8f8b8d26cfb77a3c3a4630e3f 420 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 156 1.9E-49 T 29-03-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AM354_RS04345 896aa8c8f8b8d26cfb77a3c3a4630e3f 420 Gene3D G3DSA:3.40.50.720 161 313 3.8E-23 T 29-03-2018 AM354_RS04345 896aa8c8f8b8d26cfb77a3c3a4630e3f 420 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 172 306 3.0E-48 T 29-03-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase AM354_RS04345 896aa8c8f8b8d26cfb77a3c3a4630e3f 420 SUPERFAMILY SSF69075 317 418 6.41E-28 T 29-03-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AM354_RS04345 896aa8c8f8b8d26cfb77a3c3a4630e3f 420 SUPERFAMILY SSF69742 1 158 3.01E-47 T 29-03-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AM354_RS04345 896aa8c8f8b8d26cfb77a3c3a4630e3f 420 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 418 30.855 T 29-03-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AM354_RS04345 896aa8c8f8b8d26cfb77a3c3a4630e3f 420 SUPERFAMILY SSF51735 162 315 1.17E-34 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS04345 896aa8c8f8b8d26cfb77a3c3a4630e3f 420 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 4 417 2.0E-156 T 29-03-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AM354_RS04345 896aa8c8f8b8d26cfb77a3c3a4630e3f 420 Gene3D G3DSA:1.10.1200.70 332 418 2.1E-24 T 29-03-2018 AM354_RS03805 10030b7a9e0eba83a37330edb80b9bcf 214 Pfam PF00805 Pentapeptide repeats (8 copies) 28 45 0.0012 T 29-03-2018 IPR001646 Pentapeptide repeat AM354_RS03805 10030b7a9e0eba83a37330edb80b9bcf 214 Pfam PF00805 Pentapeptide repeats (8 copies) 53 79 1.3E-4 T 29-03-2018 IPR001646 Pentapeptide repeat AM354_RS03805 10030b7a9e0eba83a37330edb80b9bcf 214 SUPERFAMILY SSF141571 28 212 7.85E-39 T 29-03-2018 AM354_RS03805 10030b7a9e0eba83a37330edb80b9bcf 214 Gene3D G3DSA:2.160.20.80 1 214 1.7E-49 T 29-03-2018 AM354_RS03805 10030b7a9e0eba83a37330edb80b9bcf 214 Pfam PF13599 Pentapeptide repeats (9 copies) 94 170 1.8E-15 T 29-03-2018 IPR001646 Pentapeptide repeat AM354_RS05975 7893dbce34215ff314f0068be00fb47c 230 SUPERFAMILY SSF51569 65 206 2.12E-6 T 29-03-2018 AM354_RS05975 7893dbce34215ff314f0068be00fb47c 230 Gene3D G3DSA:3.20.20.70 1 220 1.3E-13 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS16070 81b3e4e7a8b3dd19ddf810f3e1c03d72 101 ProSitePatterns PS00527 Ribosomal protein S14 signature. 63 85 - T 29-03-2018 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16070 81b3e4e7a8b3dd19ddf810f3e1c03d72 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 25.446 T 29-03-2018 IPR023036 Ribosomal protein S14, bacterial/plastid AM354_RS16070 81b3e4e7a8b3dd19ddf810f3e1c03d72 101 SUPERFAMILY SSF57716 2 101 3.64E-36 T 29-03-2018 AM354_RS16070 81b3e4e7a8b3dd19ddf810f3e1c03d72 101 Pfam PF00253 Ribosomal protein S14p/S29e 47 100 3.8E-25 T 29-03-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS16070 81b3e4e7a8b3dd19ddf810f3e1c03d72 101 Gene3D G3DSA:4.10.830.10 1 101 1.3E-31 T 29-03-2018 AM354_RS01970 41afd197cb56b8b015b443f2e5c6e9dd 189 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 5 188 1.0E-52 T 29-03-2018 IPR006286 Peptidase C56, PfpI AM354_RS01970 41afd197cb56b8b015b443f2e5c6e9dd 189 SUPERFAMILY SSF52317 4 187 4.73E-49 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS01970 41afd197cb56b8b015b443f2e5c6e9dd 189 Pfam PF01965 DJ-1/PfpI family 4 185 6.8E-49 T 29-03-2018 IPR002818 DJ-1/PfpI AM354_RS01970 41afd197cb56b8b015b443f2e5c6e9dd 189 Gene3D G3DSA:3.40.50.880 1 189 2.1E-40 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS22345 708daaa96b638ad4a5cb2830938b0fd9 338 TIGRFAM TIGR02205 septum_zipA: cell division protein ZipA 4 330 4.8E-80 T 29-03-2018 IPR011919 Cell division protein ZipA GO:0007049|GO:0016021|GO:0090529 AM354_RS22345 708daaa96b638ad4a5cb2830938b0fd9 338 SMART SM00771 200 330 8.8E-76 T 29-03-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 AM354_RS22345 708daaa96b638ad4a5cb2830938b0fd9 338 Hamap MF_00509 Cell division protein ZipA [zipA]. 3 332 25.138 T 29-03-2018 IPR011919 Cell division protein ZipA GO:0007049|GO:0016021|GO:0090529 AM354_RS22345 708daaa96b638ad4a5cb2830938b0fd9 338 Pfam PF04354 ZipA, C-terminal FtsZ-binding domain 203 329 3.1E-49 T 29-03-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 AM354_RS22345 708daaa96b638ad4a5cb2830938b0fd9 338 Gene3D G3DSA:3.30.1400.10 201 333 1.2E-54 T 29-03-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 AM354_RS22345 708daaa96b638ad4a5cb2830938b0fd9 338 SUPERFAMILY SSF64383 201 334 3.53E-48 T 29-03-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 AM354_RS22345 708daaa96b638ad4a5cb2830938b0fd9 338 ProDom PD035754 CELL DIVISION MEMBRANE ZIPA SEPTATION TRANSMEMBRANE HOMOLOG INNER CYCLE ZIPA 203 337 5.0E-70 T 29-03-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 AM354_RS11195 8a6beca1446c5532cea2a0bdca2090af 425 SUPERFAMILY SSF54826 3 138 3.54E-38 T 29-03-2018 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM354_RS11195 8a6beca1446c5532cea2a0bdca2090af 425 SMART SM00922 198 294 2.6E-24 T 29-03-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AM354_RS11195 8a6beca1446c5532cea2a0bdca2090af 425 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 34 135 2.4E-5 T 29-03-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain AM354_RS11195 8a6beca1446c5532cea2a0bdca2090af 425 SUPERFAMILY SSF51604 183 424 2.36E-70 T 29-03-2018 IPR029065 Enolase C-terminal domain-like AM354_RS11195 8a6beca1446c5532cea2a0bdca2090af 425 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 244 275 - T 29-03-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 AM354_RS11195 8a6beca1446c5532cea2a0bdca2090af 425 Gene3D G3DSA:3.20.20.120 179 425 4.8E-66 T 29-03-2018 IPR029065 Enolase C-terminal domain-like AM354_RS11195 8a6beca1446c5532cea2a0bdca2090af 425 Pfam PF13378 Enolase C-terminal domain-like 201 415 3.4E-57 T 29-03-2018 IPR029065 Enolase C-terminal domain-like AM354_RS11195 8a6beca1446c5532cea2a0bdca2090af 425 Gene3D G3DSA:3.30.390.10 1 178 1.7E-40 T 29-03-2018 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM354_RS07145 a53ce2a9a220773f73e0e65e76fe4f35 526 Pfam PF13646 HEAT repeats 169 223 3.6E-7 T 29-03-2018 AM354_RS07145 a53ce2a9a220773f73e0e65e76fe4f35 526 Pfam PF02653 Branched-chain amino acid transport system / permease component 234 509 6.0E-51 T 29-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AM354_RS07145 a53ce2a9a220773f73e0e65e76fe4f35 526 Gene3D G3DSA:1.25.10.20 104 173 9.7E-5 T 29-03-2018 AM354_RS07145 a53ce2a9a220773f73e0e65e76fe4f35 526 Gene3D G3DSA:1.10.3470.10 178 513 1.0E-51 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS07145 a53ce2a9a220773f73e0e65e76fe4f35 526 TIGRFAM TIGR03409 urea_trans_UrtB: urea ABC transporter, permease protein UrtB 232 523 9.8E-130 T 29-03-2018 IPR017779 ABC transporter, urea permease protein UrtB, bacterial-type AM354_RS07145 a53ce2a9a220773f73e0e65e76fe4f35 526 SUPERFAMILY SSF48371 116 220 1.77E-10 T 29-03-2018 IPR016024 Armadillo-type fold GO:0005488 AM354_RS16080 ba126741694d3eca6b4cbac1121a2cfc 177 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 29-03-2018 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS16080 ba126741694d3eca6b4cbac1121a2cfc 177 PIRSF PIRSF002162 1 177 5.6E-45 T 29-03-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16080 ba126741694d3eca6b4cbac1121a2cfc 177 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 36.551 T 29-03-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AM354_RS16080 ba126741694d3eca6b4cbac1121a2cfc 177 SUPERFAMILY SSF56053 1 82 1.22E-23 T 29-03-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16080 ba126741694d3eca6b4cbac1121a2cfc 177 SUPERFAMILY SSF56053 83 177 8.76E-36 T 29-03-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16080 ba126741694d3eca6b4cbac1121a2cfc 177 Gene3D G3DSA:3.90.930.12 86 177 6.8E-39 T 29-03-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16080 ba126741694d3eca6b4cbac1121a2cfc 177 Pfam PF00347 Ribosomal protein L6 11 82 3.7E-20 T 29-03-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16080 ba126741694d3eca6b4cbac1121a2cfc 177 Pfam PF00347 Ribosomal protein L6 90 164 2.0E-18 T 29-03-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16080 ba126741694d3eca6b4cbac1121a2cfc 177 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 1.4E-73 T 29-03-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AM354_RS16080 ba126741694d3eca6b4cbac1121a2cfc 177 PRINTS PR00059 Ribosomal protein L6 signature 71 96 2.4E-33 T 29-03-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AM354_RS16080 ba126741694d3eca6b4cbac1121a2cfc 177 PRINTS PR00059 Ribosomal protein L6 signature 99 115 2.4E-33 T 29-03-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AM354_RS16080 ba126741694d3eca6b4cbac1121a2cfc 177 PRINTS PR00059 Ribosomal protein L6 signature 141 162 2.4E-33 T 29-03-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AM354_RS16080 ba126741694d3eca6b4cbac1121a2cfc 177 Gene3D G3DSA:3.90.930.12 5 85 6.8E-26 T 29-03-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS12805 a99cea9c905e634be605e32512f659d9 182 SUPERFAMILY SSF55729 1 170 3.66E-29 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS12805 a99cea9c905e634be605e32512f659d9 182 Pfam PF13673 Acetyltransferase (GNAT) domain 48 148 1.1E-12 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS12805 a99cea9c905e634be605e32512f659d9 182 Gene3D G3DSA:3.40.630.30 1 174 4.0E-32 T 29-03-2018 AM354_RS23700 6b0e52565c95a8e3f4edf290e772cf09 662 Pfam PF00593 TonB dependent receptor 287 661 8.3E-57 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS23700 6b0e52565c95a8e3f4edf290e772cf09 662 SUPERFAMILY SSF56935 32 662 1.53E-124 T 29-03-2018 AM354_RS23700 6b0e52565c95a8e3f4edf290e772cf09 662 Gene3D G3DSA:2.170.130.10 22 162 7.9E-36 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS23700 6b0e52565c95a8e3f4edf290e772cf09 662 Pfam PF07715 TonB-dependent Receptor Plug Domain 45 155 3.4E-28 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS23700 6b0e52565c95a8e3f4edf290e772cf09 662 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 39 - T 29-03-2018 IPR010916 TonB box, conserved site AM354_RS23700 6b0e52565c95a8e3f4edf290e772cf09 662 Gene3D G3DSA:2.40.170.20 167 662 3.7E-77 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS14760 5f784f1f8ca88e4614bcaeb549eed096 548 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 374 522 2.3E-49 T 29-03-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AM354_RS14760 5f784f1f8ca88e4614bcaeb549eed096 548 SUPERFAMILY SSF52467 183 341 7.89E-58 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM354_RS14760 5f784f1f8ca88e4614bcaeb549eed096 548 Gene3D G3DSA:3.40.50.1220 179 333 5.4E-49 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM354_RS14760 5f784f1f8ca88e4614bcaeb549eed096 548 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 187 321 5.0E-42 T 29-03-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AM354_RS14760 5f784f1f8ca88e4614bcaeb549eed096 548 Gene3D G3DSA:3.40.50.970 334 534 9.0E-50 T 29-03-2018 AM354_RS14760 5f784f1f8ca88e4614bcaeb549eed096 548 Gene3D G3DSA:3.40.50.970 1 178 7.4E-62 T 29-03-2018 AM354_RS14760 5f784f1f8ca88e4614bcaeb549eed096 548 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 1 166 1.2E-56 T 29-03-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AM354_RS14760 5f784f1f8ca88e4614bcaeb549eed096 548 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 1 545 2.2E-215 T 29-03-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 AM354_RS14760 5f784f1f8ca88e4614bcaeb549eed096 548 SUPERFAMILY SSF52518 355 546 2.95E-64 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS14760 5f784f1f8ca88e4614bcaeb549eed096 548 SUPERFAMILY SSF52518 1 175 8.84E-63 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS14760 5f784f1f8ca88e4614bcaeb549eed096 548 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 411 430 - T 29-03-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 AM354_RS09155 be3873db273dcfbcf59a53567b48aae6 538 Gene3D G3DSA:3.10.20.310 83 146 2.7E-8 T 29-03-2018 AM354_RS09155 be3873db273dcfbcf59a53567b48aae6 538 Gene3D G3DSA:2.40.160.50 174 538 7.1E-36 T 29-03-2018 AM354_RS09155 be3873db273dcfbcf59a53567b48aae6 538 Pfam PF17287 POTRA domain 158 201 3.2E-10 T 29-03-2018 IPR035251 ShlB, POTRA domain AM354_RS09155 be3873db273dcfbcf59a53567b48aae6 538 Pfam PF08479 POTRA domain, ShlB-type 84 146 2.8E-14 T 29-03-2018 IPR013686 Polypeptide-transport-associated, ShlB-type AM354_RS09155 be3873db273dcfbcf59a53567b48aae6 538 PIRSF PIRSF029745 1 538 1.1E-116 T 29-03-2018 IPR027282 Two partner secretion pathway transporter GO:0015031 AM354_RS09155 be3873db273dcfbcf59a53567b48aae6 538 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 206 501 1.1E-81 T 29-03-2018 IPR005565 Haemolysin activator HlyB, C-terminal AM354_RS06025 256e01e1ec34362339a99dae6d04e508 254 SMART SM00420 8 57 5.7E-8 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS06025 256e01e1ec34362339a99dae6d04e508 254 Pfam PF00455 DeoR C terminal sensor domain 77 235 2.7E-46 T 29-03-2018 IPR014036 DeoR C-terminal sensor domain AM354_RS06025 256e01e1ec34362339a99dae6d04e508 254 Gene3D G3DSA:1.10.10.10 1 81 3.7E-8 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS06025 256e01e1ec34362339a99dae6d04e508 254 SMART SM01134 75 236 7.7E-65 T 29-03-2018 AM354_RS06025 256e01e1ec34362339a99dae6d04e508 254 Pfam PF08220 DeoR-like helix-turn-helix domain 8 56 4.2E-10 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS06025 256e01e1ec34362339a99dae6d04e508 254 Gene3D G3DSA:3.40.50.1360 82 239 6.4E-32 T 29-03-2018 AM354_RS06025 256e01e1ec34362339a99dae6d04e508 254 SUPERFAMILY SSF100950 76 238 5.65E-27 T 29-03-2018 AM354_RS06025 256e01e1ec34362339a99dae6d04e508 254 ProSitePatterns PS00894 DeoR-type HTH domain signature. 8 42 - T 29-03-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AM354_RS24805 8f3f740b6b7f6b366e99f9c7e35e5b91 471 SUPERFAMILY SSF53383 8 468 1.31E-98 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS24805 8f3f740b6b7f6b366e99f9c7e35e5b91 471 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 344 359 1.3E-10 T 29-03-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 AM354_RS24805 8f3f740b6b7f6b366e99f9c7e35e5b91 471 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 78 97 1.3E-10 T 29-03-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 AM354_RS24805 8f3f740b6b7f6b366e99f9c7e35e5b91 471 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 117 136 1.3E-10 T 29-03-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 AM354_RS24805 8f3f740b6b7f6b366e99f9c7e35e5b91 471 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 387 406 1.3E-10 T 29-03-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 AM354_RS24805 8f3f740b6b7f6b366e99f9c7e35e5b91 471 Gene3D G3DSA:3.90.1150.10 359 469 5.1E-27 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS24805 8f3f740b6b7f6b366e99f9c7e35e5b91 471 Gene3D G3DSA:3.40.640.10 87 358 3.9E-44 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS24805 8f3f740b6b7f6b366e99f9c7e35e5b91 471 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 48 405 3.1E-41 T 29-03-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 AM354_RS23785 ca436a37ee5ee2b28b40339366433d9f 317 Pfam PF03466 LysR substrate binding domain 96 295 1.4E-27 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS23785 ca436a37ee5ee2b28b40339366433d9f 317 Gene3D G3DSA:3.40.190.10 93 181 3.4E-17 T 29-03-2018 AM354_RS23785 ca436a37ee5ee2b28b40339366433d9f 317 SUPERFAMILY SSF53850 96 299 1.12E-29 T 29-03-2018 AM354_RS23785 ca436a37ee5ee2b28b40339366433d9f 317 Gene3D G3DSA:3.40.190.10 182 266 2.0E-10 T 29-03-2018 AM354_RS23785 ca436a37ee5ee2b28b40339366433d9f 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 2.2E-16 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS23785 ca436a37ee5ee2b28b40339366433d9f 317 SUPERFAMILY SSF46785 2 109 1.53E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS23785 ca436a37ee5ee2b28b40339366433d9f 317 Gene3D G3DSA:1.10.10.10 1 92 1.0E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS20430 7500019558328a8ad0e9d7638d326f46 172 ProSitePatterns PS01117 MarR-type HTH domain signature. 87 121 - T 29-03-2018 IPR023187 Transcriptional regulator MarR-type, conserved site AM354_RS20430 7500019558328a8ad0e9d7638d326f46 172 SUPERFAMILY SSF46785 20 163 2.13E-29 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS20430 7500019558328a8ad0e9d7638d326f46 172 Pfam PF01047 MarR family 53 112 3.6E-16 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM354_RS20430 7500019558328a8ad0e9d7638d326f46 172 SMART SM00347 46 148 1.7E-32 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM354_RS20430 7500019558328a8ad0e9d7638d326f46 172 PRINTS PR00598 Bacterial regulatory protein MarR family signature 72 88 6.3E-23 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM354_RS20430 7500019558328a8ad0e9d7638d326f46 172 PRINTS PR00598 Bacterial regulatory protein MarR family signature 89 104 6.3E-23 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM354_RS20430 7500019558328a8ad0e9d7638d326f46 172 PRINTS PR00598 Bacterial regulatory protein MarR family signature 108 124 6.3E-23 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM354_RS20430 7500019558328a8ad0e9d7638d326f46 172 PRINTS PR00598 Bacterial regulatory protein MarR family signature 138 158 6.3E-23 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM354_RS20430 7500019558328a8ad0e9d7638d326f46 172 Gene3D G3DSA:1.10.10.10 8 167 4.0E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS12595 82fc5fec4c12705542bad28369d19d90 652 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 2 645 53.17 T 29-03-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 AM354_RS12595 82fc5fec4c12705542bad28369d19d90 652 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 20 643 0.0 T 29-03-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 AM354_RS12595 82fc5fec4c12705542bad28369d19d90 652 Pfam PF00501 AMP-binding enzyme 83 522 3.4E-92 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM354_RS12595 82fc5fec4c12705542bad28369d19d90 652 ProSitePatterns PS00455 Putative AMP-binding domain signature. 261 272 - T 29-03-2018 IPR020845 AMP-binding, conserved site AM354_RS12595 82fc5fec4c12705542bad28369d19d90 652 Gene3D G3DSA:3.40.50.980 267 429 4.5E-36 T 29-03-2018 AM354_RS12595 82fc5fec4c12705542bad28369d19d90 652 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 24 81 4.9E-21 T 29-03-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 AM354_RS12595 82fc5fec4c12705542bad28369d19d90 652 SUPERFAMILY SSF56801 12 643 9.42E-188 T 29-03-2018 AM354_RS12595 82fc5fec4c12705542bad28369d19d90 652 Gene3D G3DSA:3.30.300.30 518 652 4.2E-28 T 29-03-2018 AM354_RS12595 82fc5fec4c12705542bad28369d19d90 652 Pfam PF13193 AMP-binding enzyme C-terminal domain 531 609 8.1E-26 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain AM354_RS12595 82fc5fec4c12705542bad28369d19d90 652 Gene3D G3DSA:3.40.50.980 74 266 4.9E-55 T 29-03-2018 AM354_RS12595 82fc5fec4c12705542bad28369d19d90 652 Gene3D G3DSA:2.30.38.10 430 515 1.3E-10 T 29-03-2018 AM354_RS21175 e6b40efc3faa0d3933387537aa5b33ff 636 SUPERFAMILY SSF51905 557 626 1.4E-15 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS21175 e6b40efc3faa0d3933387537aa5b33ff 636 SUPERFAMILY SSF51905 76 193 1.4E-15 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS21175 e6b40efc3faa0d3933387537aa5b33ff 636 SUPERFAMILY SSF51905 356 426 1.4E-15 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS21175 e6b40efc3faa0d3933387537aa5b33ff 636 Pfam PF13450 NAD(P)-binding Rossmann-like domain 82 142 1.2E-12 T 29-03-2018 AM354_RS21175 e6b40efc3faa0d3933387537aa5b33ff 636 Gene3D G3DSA:3.50.50.60 75 628 3.3E-17 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS21655 4ea7c6b71bdc8b3a39bf1bb76a5bf3bf 1020 Pfam PF03797 Autotransporter beta-domain 753 1000 1.0E-65 T 29-03-2018 IPR005546 Autotransporter beta-domain AM354_RS21655 4ea7c6b71bdc8b3a39bf1bb76a5bf3bf 1020 TIGRFAM TIGR04393 rpt_T5SS_PEPC: T5SS/PEP-CTERM-associated repeat 250 290 1.0E-6 T 29-03-2018 IPR030895 T5SS/PEP-CTERM-associated repeat AM354_RS21655 4ea7c6b71bdc8b3a39bf1bb76a5bf3bf 1020 SUPERFAMILY SSF103515 698 1020 1.57E-72 T 29-03-2018 IPR005546 Autotransporter beta-domain AM354_RS21655 4ea7c6b71bdc8b3a39bf1bb76a5bf3bf 1020 SMART SM00869 750 1010 6.1E-60 T 29-03-2018 IPR005546 Autotransporter beta-domain AM354_RS21655 4ea7c6b71bdc8b3a39bf1bb76a5bf3bf 1020 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 481 1020 1.8E-53 T 29-03-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 AM354_RS21655 4ea7c6b71bdc8b3a39bf1bb76a5bf3bf 1020 Gene3D G3DSA:2.40.128.130 689 1020 2.1E-70 T 29-03-2018 AM354_RS21115 464ba451fb17bbe092a75ae12602f954 446 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 351 360 - T 29-03-2018 IPR025944 Sigma-54 interaction domain, conserved site AM354_RS21115 464ba451fb17bbe092a75ae12602f954 446 Gene3D G3DSA:1.10.8.60 311 384 7.9E-22 T 29-03-2018 AM354_RS21115 464ba451fb17bbe092a75ae12602f954 446 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 224 239 - T 29-03-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AM354_RS21115 464ba451fb17bbe092a75ae12602f954 446 SUPERFAMILY SSF52540 137 381 2.19E-70 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS21115 464ba451fb17bbe092a75ae12602f954 446 Gene3D G3DSA:3.40.50.300 133 310 5.7E-26 T 29-03-2018 AM354_RS21115 464ba451fb17bbe092a75ae12602f954 446 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 162 175 - T 29-03-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AM354_RS21115 464ba451fb17bbe092a75ae12602f954 446 Pfam PF00158 Sigma-54 interaction domain 138 304 5.0E-72 T 29-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AM354_RS21115 464ba451fb17bbe092a75ae12602f954 446 SUPERFAMILY SSF46689 351 439 1.66E-8 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS21115 464ba451fb17bbe092a75ae12602f954 446 Gene3D G3DSA:1.10.10.60 385 441 2.5E-9 T 29-03-2018 AM354_RS21115 464ba451fb17bbe092a75ae12602f954 446 SMART SM00382 158 301 1.6E-9 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS21115 464ba451fb17bbe092a75ae12602f954 446 Gene3D G3DSA:3.40.50.2300 1 128 4.5E-35 T 29-03-2018 AM354_RS21115 464ba451fb17bbe092a75ae12602f954 446 SUPERFAMILY SSF52172 6 182 1.17E-43 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS21115 464ba451fb17bbe092a75ae12602f954 446 SMART SM00448 7 118 6.5E-35 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS21115 464ba451fb17bbe092a75ae12602f954 446 Pfam PF00072 Response regulator receiver domain 10 118 2.0E-31 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS15040 3e6950e0e8fb3f0d2b0d48f80ffd69a5 363 Gene3D G3DSA:2.30.300.10 1 186 3.5E-55 T 29-03-2018 AM354_RS15040 3e6950e0e8fb3f0d2b0d48f80ffd69a5 363 Gene3D G3DSA:2.30.300.10 225 355 1.7E-23 T 29-03-2018 AM354_RS15040 3e6950e0e8fb3f0d2b0d48f80ffd69a5 363 SUPERFAMILY SSF69279 1 174 6.23E-54 T 29-03-2018 AM354_RS15040 3e6950e0e8fb3f0d2b0d48f80ffd69a5 363 SUPERFAMILY SSF69279 176 342 1.42E-44 T 29-03-2018 AM354_RS15040 3e6950e0e8fb3f0d2b0d48f80ffd69a5 363 Pfam PF05954 Phage late control gene D protein (GPD) 29 323 5.0E-20 T 29-03-2018 AM354_RS15040 3e6950e0e8fb3f0d2b0d48f80ffd69a5 363 PIRSF PIRSF004440 1 361 4.0E-99 T 29-03-2018 IPR026276 Baseplate protein GpP AM354_RS04515 e03e921b6b80d9ef8b097e7a61c28c39 239 Gene3D G3DSA:1.20.120.530 77 239 1.7E-31 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM354_RS04515 e03e921b6b80d9ef8b097e7a61c28c39 239 SMART SM00345 14 73 3.9E-18 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS04515 e03e921b6b80d9ef8b097e7a61c28c39 239 Pfam PF07729 FCD domain 98 223 2.7E-24 T 29-03-2018 IPR011711 GntR, C-terminal AM354_RS04515 e03e921b6b80d9ef8b097e7a61c28c39 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 63 6.0E-9 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS04515 e03e921b6b80d9ef8b097e7a61c28c39 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 33 47 6.0E-9 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS04515 e03e921b6b80d9ef8b097e7a61c28c39 239 SUPERFAMILY SSF46785 1 92 6.99E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS04515 e03e921b6b80d9ef8b097e7a61c28c39 239 SUPERFAMILY SSF48008 94 231 1.06E-24 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM354_RS04515 e03e921b6b80d9ef8b097e7a61c28c39 239 Gene3D G3DSA:1.10.10.10 2 75 8.1E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS04515 e03e921b6b80d9ef8b097e7a61c28c39 239 SMART SM00895 97 224 7.8E-21 T 29-03-2018 IPR011711 GntR, C-terminal AM354_RS04515 e03e921b6b80d9ef8b097e7a61c28c39 239 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 73 1.3E-18 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS03015 b94c9ae3552013feeec21024be748198 100 Pfam PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme 29 91 5.7E-13 T 29-03-2018 IPR018660 C-type lysozyme inhibitor AM354_RS03015 b94c9ae3552013feeec21024be748198 100 SUPERFAMILY SSF141488 24 98 2.62E-19 T 29-03-2018 IPR018660 C-type lysozyme inhibitor AM354_RS17255 60126030cacd82b510e227fee9b220dd 162 Gene3D G3DSA:3.40.470.10 2 162 5.9E-47 T 29-03-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AM354_RS17255 60126030cacd82b510e227fee9b220dd 162 Hamap MF_01956 G/U mismatch-specific DNA glycosylase [mug]. 1 162 47.175 T 29-03-2018 IPR023502 G/U mismatch-specific DNA glycosylase, bacterial GO:0006281|GO:0019104 AM354_RS17255 60126030cacd82b510e227fee9b220dd 162 Pfam PF03167 Uracil DNA glycosylase superfamily 4 154 6.8E-25 T 29-03-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AM354_RS17255 60126030cacd82b510e227fee9b220dd 162 SUPERFAMILY SSF52141 3 159 9.16E-44 T 29-03-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AM354_RS07320 f9b8907b7501c32ad7bfbe17cf76872e 97 SUPERFAMILY SSF54909 1 91 4.29E-24 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel AM354_RS07320 f9b8907b7501c32ad7bfbe17cf76872e 97 Gene3D G3DSA:3.30.70.100 1 91 7.1E-22 T 29-03-2018 AM354_RS07320 f9b8907b7501c32ad7bfbe17cf76872e 97 Hamap MF_02051 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase [lsrG]. 1 96 38.156 T 29-03-2018 IPR033672 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase GO:0016853 AM354_RS07320 f9b8907b7501c32ad7bfbe17cf76872e 97 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 76 2.5E-18 T 29-03-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain AM354_RS14295 6765b9420c44b949dff58a78341d59d6 238 Hamap MF_00564 Ribonuclease PH [rph]. 1 237 49.019 T 29-03-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 AM354_RS14295 6765b9420c44b949dff58a78341d59d6 238 ProSitePatterns PS01277 Ribonuclease PH signature. 116 128 - T 29-03-2018 IPR018336 Ribonuclease PH, conserved site AM354_RS14295 6765b9420c44b949dff58a78341d59d6 238 Gene3D G3DSA:3.30.230.70 1 238 3.7E-60 T 29-03-2018 IPR027408 PNPase/RNase PH domain Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AM354_RS14295 6765b9420c44b949dff58a78341d59d6 238 SUPERFAMILY SSF54211 1 181 1.01E-44 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM354_RS14295 6765b9420c44b949dff58a78341d59d6 238 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 2 236 6.7E-112 T 29-03-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 AM354_RS14295 6765b9420c44b949dff58a78341d59d6 238 Pfam PF03725 3' exoribonuclease family, domain 2 157 222 8.6E-11 T 29-03-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AM354_RS14295 6765b9420c44b949dff58a78341d59d6 238 SUPERFAMILY SSF55666 153 237 7.59E-26 T 29-03-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AM354_RS14295 6765b9420c44b949dff58a78341d59d6 238 Pfam PF01138 3' exoribonuclease family, domain 1 10 140 8.6E-24 T 29-03-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AM354_RS09910 4260112e29f46f06af475c6554f0f30a 417 Gene3D G3DSA:3.40.630.10 251 416 1.3E-19 T 29-03-2018 AM354_RS09910 4260112e29f46f06af475c6554f0f30a 417 Gene3D G3DSA:3.40.630.10 2 250 1.7E-38 T 29-03-2018 AM354_RS09910 4260112e29f46f06af475c6554f0f30a 417 Pfam PF01546 Peptidase family M20/M25/M40 80 408 5.6E-25 T 29-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AM354_RS09910 4260112e29f46f06af475c6554f0f30a 417 PIRSF PIRSF001235 6 415 1.0E-132 T 29-03-2018 IPR010158 Amidase, carbamoylase-type GO:0008152|GO:0016813 AM354_RS09910 4260112e29f46f06af475c6554f0f30a 417 Pfam PF07687 Peptidase dimerisation domain 215 314 3.1E-7 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain AM354_RS09910 4260112e29f46f06af475c6554f0f30a 417 SUPERFAMILY SSF53187 339 411 2.2E-78 T 29-03-2018 AM354_RS09910 4260112e29f46f06af475c6554f0f30a 417 SUPERFAMILY SSF53187 10 226 2.2E-78 T 29-03-2018 AM354_RS09910 4260112e29f46f06af475c6554f0f30a 417 SUPERFAMILY SSF55031 216 331 3.14E-28 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain AM354_RS09910 4260112e29f46f06af475c6554f0f30a 417 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 17 403 6.2E-117 T 29-03-2018 IPR010158 Amidase, carbamoylase-type GO:0008152|GO:0016813 AM354_RS09910 4260112e29f46f06af475c6554f0f30a 417 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 79 88 - T 29-03-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 AM354_RS13140 44a49a46c246352bdc305bb900c5d460 399 Gene3D G3DSA:3.30.70.20 68 389 5.7E-4 T 29-03-2018 AM354_RS13140 44a49a46c246352bdc305bb900c5d460 399 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 59 70 - T 29-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM354_RS13140 44a49a46c246352bdc305bb900c5d460 399 SUPERFAMILY SSF46548 8 85 2.79E-16 T 29-03-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AM354_RS13140 44a49a46c246352bdc305bb900c5d460 399 TIGRFAM TIGR03379 glycerol3P_GlpC: glycerol-3-phosphate dehydrogenase, anaerobic, C subunit 6 398 2.2E-229 T 29-03-2018 IPR017753 Glycerol-3-phosphate dehydrogenase, GlpC subunit GO:0006810|GO:0016020 AM354_RS13140 44a49a46c246352bdc305bb900c5d460 399 Pfam PF13183 4Fe-4S dicluster domain 9 73 6.7E-10 T 29-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM354_RS13140 44a49a46c246352bdc305bb900c5d460 399 Pfam PF02754 Cysteine-rich domain 296 379 5.3E-14 T 29-03-2018 IPR004017 Cysteine-rich domain AM354_RS13140 44a49a46c246352bdc305bb900c5d460 399 Pfam PF02754 Cysteine-rich domain 166 252 1.2E-13 T 29-03-2018 IPR004017 Cysteine-rich domain AM354_RS13140 44a49a46c246352bdc305bb900c5d460 399 Gene3D G3DSA:3.30.70.20 7 67 3.5E-8 T 29-03-2018 AM354_RS12960 d631cac60d094395d1ada94f02dc5dcf 757 Gene3D G3DSA:3.20.20.210 388 757 7.5E-127 T 29-03-2018 AM354_RS12960 d631cac60d094395d1ada94f02dc5dcf 757 Hamap MF_00172 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 3 756 37.578 T 29-03-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 AM354_RS12960 d631cac60d094395d1ada94f02dc5dcf 757 SUPERFAMILY SSF51726 5 392 2.88E-113 T 29-03-2018 AM354_RS12960 d631cac60d094395d1ada94f02dc5dcf 757 Pfam PF08267 Cobalamin-independent synthase, N-terminal domain 5 312 2.0E-126 T 29-03-2018 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 AM354_RS12960 d631cac60d094395d1ada94f02dc5dcf 757 SUPERFAMILY SSF51726 394 756 2.09E-118 T 29-03-2018 AM354_RS12960 d631cac60d094395d1ada94f02dc5dcf 757 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 429 751 2.7E-157 T 29-03-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 AM354_RS12960 d631cac60d094395d1ada94f02dc5dcf 757 Gene3D G3DSA:3.20.20.210 3 387 5.6E-141 T 29-03-2018 AM354_RS12960 d631cac60d094395d1ada94f02dc5dcf 757 TIGRFAM TIGR01371 met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 8 756 0.0 T 29-03-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 AM354_RS12960 d631cac60d094395d1ada94f02dc5dcf 757 PIRSF PIRSF000382 2 757 0.0 T 29-03-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 AM354_RS11525 cd811cc0af15127b7fae1455a9e7e000 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 4.9E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS11525 cd811cc0af15127b7fae1455a9e7e000 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 4.9E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS11525 cd811cc0af15127b7fae1455a9e7e000 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 4.9E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS11525 cd811cc0af15127b7fae1455a9e7e000 294 SUPERFAMILY SSF53850 95 291 3.14E-25 T 29-03-2018 AM354_RS11525 cd811cc0af15127b7fae1455a9e7e000 294 Pfam PF03466 LysR substrate binding domain 94 290 3.4E-24 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS11525 cd811cc0af15127b7fae1455a9e7e000 294 Gene3D G3DSA:1.10.10.10 6 92 4.7E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS11525 cd811cc0af15127b7fae1455a9e7e000 294 SUPERFAMILY SSF46785 4 114 9.08E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS11525 cd811cc0af15127b7fae1455a9e7e000 294 Gene3D G3DSA:3.40.190.10 93 203 3.5E-15 T 29-03-2018 AM354_RS11525 cd811cc0af15127b7fae1455a9e7e000 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 2.9E-17 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS06440 48fe7409d8247eba8e8e19555a41366f 502 SUPERFAMILY SSF52540 249 489 3.4E-41 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS06440 48fe7409d8247eba8e8e19555a41366f 502 Gene3D G3DSA:3.40.50.300 256 501 1.3E-32 T 29-03-2018 AM354_RS06440 48fe7409d8247eba8e8e19555a41366f 502 SUPERFAMILY SSF52540 8 232 6.53E-57 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS06440 48fe7409d8247eba8e8e19555a41366f 502 ProSitePatterns PS00211 ABC transporters family signature. 403 417 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS06440 48fe7409d8247eba8e8e19555a41366f 502 Pfam PF00005 ABC transporter 276 430 1.0E-16 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS06440 48fe7409d8247eba8e8e19555a41366f 502 Pfam PF00005 ABC transporter 25 174 6.0E-28 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS06440 48fe7409d8247eba8e8e19555a41366f 502 Gene3D G3DSA:3.40.50.300 3 237 1.2E-51 T 29-03-2018 AM354_RS06440 48fe7409d8247eba8e8e19555a41366f 502 SMART SM00382 34 229 7.4E-9 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS06440 48fe7409d8247eba8e8e19555a41366f 502 SMART SM00382 284 479 3.8 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS14505 7e9806a6607028952be1e636899dc352 329 Gene3D G3DSA:3.40.190.10 20 125 1.7E-24 T 29-03-2018 AM354_RS14505 7e9806a6607028952be1e636899dc352 329 Pfam PF13531 Bacterial extracellular solute-binding protein 42 280 7.9E-46 T 29-03-2018 AM354_RS14505 7e9806a6607028952be1e636899dc352 329 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 13 326 9.0E-178 T 29-03-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 AM354_RS14505 7e9806a6607028952be1e636899dc352 329 SUPERFAMILY SSF53850 21 326 5.1E-92 T 29-03-2018 AM354_RS14505 7e9806a6607028952be1e636899dc352 329 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 145 153 - T 29-03-2018 IPR034408 Sulphate/thiosulphate-binding site GO:1901681 AM354_RS14505 7e9806a6607028952be1e636899dc352 329 Gene3D G3DSA:3.40.190.10 126 244 4.4E-27 T 29-03-2018 AM354_RS14505 7e9806a6607028952be1e636899dc352 329 Gene3D G3DSA:3.40.190.10 245 329 3.8E-26 T 29-03-2018 AM354_RS23880 01ecd892d846a5fc13e39db539c48cde 188 Gene3D G3DSA:3.40.30.10 25 185 2.4E-4 T 29-03-2018 AM354_RS23880 01ecd892d846a5fc13e39db539c48cde 188 Pfam PF09695 Bacterial protein of unknown function (YtfJ_HI0045) 25 181 9.2E-62 T 29-03-2018 IPR006513 Conserved hypothetical protein CHP01626, YtfJ AM354_RS23880 01ecd892d846a5fc13e39db539c48cde 188 TIGRFAM TIGR01626 ytfJ_HI0045: conserved hypothetical protein YtfJ-family, TIGR01626 1 182 4.7E-70 T 29-03-2018 IPR006513 Conserved hypothetical protein CHP01626, YtfJ AM354_RS09445 5f8305781b98936529de2915275514ee 153 Gene3D G3DSA:3.40.630.30 1 87 7.5E-11 T 29-03-2018 AM354_RS09445 5f8305781b98936529de2915275514ee 153 Gene3D G3DSA:3.40.630.30 88 146 2.2E-10 T 29-03-2018 AM354_RS09445 5f8305781b98936529de2915275514ee 153 Pfam PF00583 Acetyltransferase (GNAT) family 40 121 1.5E-10 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS09445 5f8305781b98936529de2915275514ee 153 SUPERFAMILY SSF55729 13 151 6.98E-23 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS17790 17ade2c7040697f70848f632125a3891 324 Pfam PF01590 GAF domain 29 151 1.6E-10 T 29-03-2018 IPR003018 GAF domain GO:0005515 AM354_RS17790 17ade2c7040697f70848f632125a3891 324 SUPERFAMILY SSF55073 169 315 3.3E-32 T 29-03-2018 IPR029787 Nucleotide cyclase AM354_RS17790 17ade2c7040697f70848f632125a3891 324 Pfam PF00990 Diguanylate cyclase, GGDEF domain 164 316 3.1E-32 T 29-03-2018 IPR000160 GGDEF domain AM354_RS17790 17ade2c7040697f70848f632125a3891 324 SMART SM00065 26 165 3.3E-6 T 29-03-2018 IPR003018 GAF domain GO:0005515 AM354_RS17790 17ade2c7040697f70848f632125a3891 324 SUPERFAMILY SSF55781 28 154 8.72E-28 T 29-03-2018 IPR029016 GAF domain-like AM354_RS17790 17ade2c7040697f70848f632125a3891 324 Gene3D G3DSA:3.30.70.270 164 320 4.6E-37 T 29-03-2018 AM354_RS17790 17ade2c7040697f70848f632125a3891 324 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 163 316 1.6E-29 T 29-03-2018 IPR000160 GGDEF domain AM354_RS17790 17ade2c7040697f70848f632125a3891 324 Gene3D G3DSA:3.30.450.40 17 163 1.8E-24 T 29-03-2018 IPR029016 GAF domain-like AM354_RS17790 17ade2c7040697f70848f632125a3891 324 SMART SM00267 154 320 5.7E-30 T 29-03-2018 IPR000160 GGDEF domain AM354_RS22955 47deb88d5e21ae1be91142b5f8cf4707 273 Gene3D G3DSA:3.30.70.660 116 253 8.0E-36 T 29-03-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS22955 47deb88d5e21ae1be91142b5f8cf4707 273 Pfam PF01416 tRNA pseudouridine synthase 19 113 3.5E-9 T 29-03-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS22955 47deb88d5e21ae1be91142b5f8cf4707 273 Pfam PF01416 tRNA pseudouridine synthase 153 255 1.4E-27 T 29-03-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS22955 47deb88d5e21ae1be91142b5f8cf4707 273 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 12 254 35.416 T 29-03-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS22955 47deb88d5e21ae1be91142b5f8cf4707 273 SUPERFAMILY SSF55120 11 267 1.87E-92 T 29-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS22955 47deb88d5e21ae1be91142b5f8cf4707 273 Gene3D G3DSA:3.30.70.580 9 115 1.1E-36 T 29-03-2018 AM354_RS22955 47deb88d5e21ae1be91142b5f8cf4707 273 PIRSF PIRSF001430 11 262 1.1E-77 T 29-03-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS22955 47deb88d5e21ae1be91142b5f8cf4707 273 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 13 249 1.9E-77 T 29-03-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS05210 682a6228b4881ae6f3b300ae20d72919 238 SUPERFAMILY SSF46894 171 237 1.22E-15 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS05210 682a6228b4881ae6f3b300ae20d72919 238 Pfam PF03472 Autoinducer binding domain 20 161 5.8E-31 T 29-03-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain AM354_RS05210 682a6228b4881ae6f3b300ae20d72919 238 SMART SM00421 175 232 8.9E-18 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS05210 682a6228b4881ae6f3b300ae20d72919 238 Gene3D G3DSA:1.10.10.10 177 238 5.0E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS05210 682a6228b4881ae6f3b300ae20d72919 238 SUPERFAMILY SSF75516 11 164 2.22E-30 T 29-03-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain AM354_RS05210 682a6228b4881ae6f3b300ae20d72919 238 Gene3D G3DSA:3.30.450.80 1 168 4.2E-32 T 29-03-2018 AM354_RS05210 682a6228b4881ae6f3b300ae20d72919 238 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 192 208 8.3E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS05210 682a6228b4881ae6f3b300ae20d72919 238 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 208 220 8.3E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS05210 682a6228b4881ae6f3b300ae20d72919 238 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 178 192 8.3E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS05210 682a6228b4881ae6f3b300ae20d72919 238 Pfam PF00196 Bacterial regulatory proteins, luxR family 176 231 1.3E-17 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS05210 682a6228b4881ae6f3b300ae20d72919 238 ProSitePatterns PS00622 LuxR-type HTH domain signature. 192 219 - T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS18995 8e5e83e06d7f475b13c517f4c049e5d0 178 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 7 173 5.2E-74 T 29-03-2018 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620 AM354_RS18995 8e5e83e06d7f475b13c517f4c049e5d0 178 Pfam PF00156 Phosphoribosyl transferase domain 12 160 3.0E-26 T 29-03-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AM354_RS18995 8e5e83e06d7f475b13c517f4c049e5d0 178 Gene3D G3DSA:3.40.50.2020 2 175 3.4E-46 T 29-03-2018 AM354_RS18995 8e5e83e06d7f475b13c517f4c049e5d0 178 SUPERFAMILY SSF53271 3 174 4.06E-56 T 29-03-2018 IPR029057 Phosphoribosyltransferase-like AM354_RS00920 cb983ec364a091a2390d6d00d4c4ab8e 264 Pfam PF00455 DeoR C terminal sensor domain 83 241 5.9E-43 T 29-03-2018 IPR014036 DeoR C-terminal sensor domain AM354_RS00920 cb983ec364a091a2390d6d00d4c4ab8e 264 SUPERFAMILY SSF46785 11 72 8.39E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS00920 cb983ec364a091a2390d6d00d4c4ab8e 264 Gene3D G3DSA:3.40.50.1360 81 249 4.4E-34 T 29-03-2018 AM354_RS00920 cb983ec364a091a2390d6d00d4c4ab8e 264 Pfam PF08220 DeoR-like helix-turn-helix domain 14 68 7.5E-15 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS00920 cb983ec364a091a2390d6d00d4c4ab8e 264 Gene3D G3DSA:1.10.10.10 1 68 6.9E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS00920 cb983ec364a091a2390d6d00d4c4ab8e 264 SUPERFAMILY SSF100950 82 243 9.21E-24 T 29-03-2018 AM354_RS00920 cb983ec364a091a2390d6d00d4c4ab8e 264 SMART SM01134 81 243 4.2E-55 T 29-03-2018 AM354_RS00920 cb983ec364a091a2390d6d00d4c4ab8e 264 SMART SM00420 14 66 8.3E-15 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS09025 608055ab880c58df187095bf1e844d73 591 ProSitePatterns PS00211 ABC transporters family signature. 473 487 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS09025 608055ab880c58df187095bf1e844d73 591 Pfam PF00005 ABC transporter 352 500 1.2E-30 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS09025 608055ab880c58df187095bf1e844d73 591 SUPERFAMILY SSF90123 9 325 3.01E-72 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM354_RS09025 608055ab880c58df187095bf1e844d73 591 SUPERFAMILY SSF52540 329 572 3.11E-80 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS09025 608055ab880c58df187095bf1e844d73 591 SMART SM00382 361 547 2.8E-13 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS09025 608055ab880c58df187095bf1e844d73 591 Gene3D G3DSA:1.20.1560.10 2 324 7.2E-59 T 29-03-2018 AM354_RS09025 608055ab880c58df187095bf1e844d73 591 Pfam PF00664 ABC transporter transmembrane region 21 291 1.4E-38 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM354_RS09025 608055ab880c58df187095bf1e844d73 591 Gene3D G3DSA:3.40.50.300 325 577 5.4E-64 T 29-03-2018 AM354_RS11280 1b3fbe3adf6a755af300fb1594dcacfc 263 Gene3D G3DSA:3.40.50.10090 6 52 4.3E-9 T 29-03-2018 AM354_RS11280 1b3fbe3adf6a755af300fb1594dcacfc 263 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 252 8.6E-65 T 29-03-2018 AM354_RS11280 1b3fbe3adf6a755af300fb1594dcacfc 263 Gene3D G3DSA:3.40.50.720 53 261 9.6E-65 T 29-03-2018 AM354_RS11280 1b3fbe3adf6a755af300fb1594dcacfc 263 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 13 198 0.0042 T 29-03-2018 AM354_RS11280 1b3fbe3adf6a755af300fb1594dcacfc 263 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 149 177 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM354_RS11280 1b3fbe3adf6a755af300fb1594dcacfc 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 14 31 2.0E-40 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11280 1b3fbe3adf6a755af300fb1594dcacfc 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 2.0E-40 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11280 1b3fbe3adf6a755af300fb1594dcacfc 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 88 99 2.0E-40 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11280 1b3fbe3adf6a755af300fb1594dcacfc 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 2.0E-40 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11280 1b3fbe3adf6a755af300fb1594dcacfc 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 2.0E-40 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11280 1b3fbe3adf6a755af300fb1594dcacfc 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 2.0E-40 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11280 1b3fbe3adf6a755af300fb1594dcacfc 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 2.0E-6 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11280 1b3fbe3adf6a755af300fb1594dcacfc 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 2.0E-6 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11280 1b3fbe3adf6a755af300fb1594dcacfc 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 2.0E-6 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11280 1b3fbe3adf6a755af300fb1594dcacfc 263 SUPERFAMILY SSF51735 12 254 7.01E-79 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS03035 f419d96cfdfe1099af831e8b862c1c1c 78 Pfam PF07869 Protein of unknown function (DUF1656) 19 69 2.1E-14 T 29-03-2018 IPR012451 Protein of unknown function DUF1656 AM354_RS20095 df25deaed5032e8a15225f35be4e7b19 131 Pfam PF04241 Protein of unknown function (DUF423) 20 106 2.4E-24 T 29-03-2018 IPR006696 Protein of unknown function DUF423 AM354_RS13095 c495473621c6bc205b8bed243b2225c1 125 PRINTS PR01274 Metalloprotease inhibitor signature 103 116 3.8E-11 T 29-03-2018 IPR022815 Protease inhibitor I38 AM354_RS13095 c495473621c6bc205b8bed243b2225c1 125 PRINTS PR01274 Metalloprotease inhibitor signature 86 99 3.8E-11 T 29-03-2018 IPR022815 Protease inhibitor I38 AM354_RS13095 c495473621c6bc205b8bed243b2225c1 125 PRINTS PR01274 Metalloprotease inhibitor signature 24 40 3.8E-11 T 29-03-2018 IPR022815 Protease inhibitor I38 AM354_RS13095 c495473621c6bc205b8bed243b2225c1 125 Pfam PF02974 Protease inhibitor Inh 29 116 1.1E-18 T 29-03-2018 IPR021140 Alkaline proteinase inhibitor/ Outer membrane lipoprotein Omp19 AM354_RS13095 c495473621c6bc205b8bed243b2225c1 125 Gene3D G3DSA:2.40.128.10 30 122 2.3E-22 T 29-03-2018 AM354_RS13095 c495473621c6bc205b8bed243b2225c1 125 SUPERFAMILY SSF50882 25 122 1.33E-24 T 29-03-2018 IPR016085 Protease inhibitor, beta-barrel domain GO:0004866 AM354_RS13095 c495473621c6bc205b8bed243b2225c1 125 ProDom PD015804 INHIBITOR PROTEASE METALLOPROTEASE PROTEINASE PRECURSOR SIGNAL PERIPLASMIC METALLOENZYME ALKALINE PRTA-SPECIFIC 34 120 8.0E-39 T 29-03-2018 IPR003086 Metalloprotease inhibitor I38 GO:0004866|GO:0030288 AM354_RS00905 a37b46f236198dc30bb9f4c38711e1dc 890 SUPERFAMILY SSF53732 10 626 1.44E-221 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM354_RS00905 a37b46f236198dc30bb9f4c38711e1dc 890 ProSitePatterns PS01244 Aconitase family signature 2. 493 506 - T 29-03-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AM354_RS00905 a37b46f236198dc30bb9f4c38711e1dc 890 Pfam PF00330 Aconitase family (aconitate hydratase) 74 562 2.7E-182 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM354_RS00905 a37b46f236198dc30bb9f4c38711e1dc 890 Gene3D G3DSA:3.30.499.10 372 576 2.4E-65 T 29-03-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 AM354_RS00905 a37b46f236198dc30bb9f4c38711e1dc 890 ProSitePatterns PS00450 Aconitase family signature 1. 427 443 - T 29-03-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AM354_RS00905 a37b46f236198dc30bb9f4c38711e1dc 890 Pfam PF00694 Aconitase C-terminal domain 691 818 4.2E-50 T 29-03-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33 AM354_RS00905 a37b46f236198dc30bb9f4c38711e1dc 890 SUPERFAMILY SSF52016 630 890 1.79E-90 T 29-03-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel AM354_RS00905 a37b46f236198dc30bb9f4c38711e1dc 890 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 19 890 0.0 T 29-03-2018 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-917937 AM354_RS00905 a37b46f236198dc30bb9f4c38711e1dc 890 Gene3D G3DSA:3.40.1060.10 240 371 2.3E-44 T 29-03-2018 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33 AM354_RS00905 a37b46f236198dc30bb9f4c38711e1dc 890 Gene3D G3DSA:3.20.19.10 652 890 9.7E-96 T 29-03-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel AM354_RS00905 a37b46f236198dc30bb9f4c38711e1dc 890 Gene3D G3DSA:3.30.499.10 31 239 3.1E-74 T 29-03-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 AM354_RS00905 a37b46f236198dc30bb9f4c38711e1dc 890 PRINTS PR00415 Aconitase family signature 431 442 4.2E-42 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM354_RS00905 a37b46f236198dc30bb9f4c38711e1dc 890 PRINTS PR00415 Aconitase family signature 493 506 4.2E-42 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM354_RS00905 a37b46f236198dc30bb9f4c38711e1dc 890 PRINTS PR00415 Aconitase family signature 279 292 4.2E-42 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM354_RS00905 a37b46f236198dc30bb9f4c38711e1dc 890 PRINTS PR00415 Aconitase family signature 170 178 4.2E-42 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM354_RS00905 a37b46f236198dc30bb9f4c38711e1dc 890 PRINTS PR00415 Aconitase family signature 217 232 4.2E-42 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM354_RS00905 a37b46f236198dc30bb9f4c38711e1dc 890 PRINTS PR00415 Aconitase family signature 293 306 4.2E-42 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM354_RS00905 a37b46f236198dc30bb9f4c38711e1dc 890 PRINTS PR00415 Aconitase family signature 203 216 4.2E-42 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM354_RS00905 a37b46f236198dc30bb9f4c38711e1dc 890 PRINTS PR00415 Aconitase family signature 372 386 4.2E-42 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM354_RS00905 a37b46f236198dc30bb9f4c38711e1dc 890 PRINTS PR00415 Aconitase family signature 146 159 4.2E-42 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM354_RS20160 dacd727bd79c0878cda411fb29aa6b56 274 Gene3D G3DSA:2.160.10.10 87 257 2.8E-36 T 29-03-2018 AM354_RS20160 dacd727bd79c0878cda411fb29aa6b56 274 Hamap MF_00811 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 1 272 58.725 T 29-03-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 AM354_RS20160 dacd727bd79c0878cda411fb29aa6b56 274 Gene3D G3DSA:1.10.166.10 3 69 5.2E-28 T 29-03-2018 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117 AM354_RS20160 dacd727bd79c0878cda411fb29aa6b56 274 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 175 209 8.7E-13 T 29-03-2018 IPR001451 Hexapeptide repeat AM354_RS20160 dacd727bd79c0878cda411fb29aa6b56 274 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 133 166 0.0018 T 29-03-2018 IPR001451 Hexapeptide repeat AM354_RS20160 dacd727bd79c0878cda411fb29aa6b56 274 Pfam PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal 3 69 5.6E-25 T 29-03-2018 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117 AM354_RS20160 dacd727bd79c0878cda411fb29aa6b56 274 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 134 162 - T 29-03-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AM354_RS20160 dacd727bd79c0878cda411fb29aa6b56 274 SUPERFAMILY SSF51161 1 256 1.52E-79 T 29-03-2018 IPR011004 Trimeric LpxA-like AM354_RS20160 dacd727bd79c0878cda411fb29aa6b56 274 TIGRFAM TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 3 273 2.1E-162 T 29-03-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 AM354_RS21125 b49e9d05d7c34cf70c96b0a06bce74df 112 SUPERFAMILY SSF54913 1 112 7.63E-47 T 29-03-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta AM354_RS21125 b49e9d05d7c34cf70c96b0a06bce74df 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 29-03-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 AM354_RS21125 b49e9d05d7c34cf70c96b0a06bce74df 112 PRINTS PR00340 P-II protein signature 2 17 1.8E-44 T 29-03-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AM354_RS21125 b49e9d05d7c34cf70c96b0a06bce74df 112 PRINTS PR00340 P-II protein signature 23 41 1.8E-44 T 29-03-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AM354_RS21125 b49e9d05d7c34cf70c96b0a06bce74df 112 PRINTS PR00340 P-II protein signature 52 75 1.8E-44 T 29-03-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AM354_RS21125 b49e9d05d7c34cf70c96b0a06bce74df 112 PRINTS PR00340 P-II protein signature 83 103 1.8E-44 T 29-03-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AM354_RS21125 b49e9d05d7c34cf70c96b0a06bce74df 112 Gene3D G3DSA:3.30.70.120 1 108 1.4E-49 T 29-03-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal AM354_RS21125 b49e9d05d7c34cf70c96b0a06bce74df 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 2.3E-44 T 29-03-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AM354_RS21125 b49e9d05d7c34cf70c96b0a06bce74df 112 PIRSF PIRSF039144 1 112 4.0E-58 T 29-03-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AM354_RS21125 b49e9d05d7c34cf70c96b0a06bce74df 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 29-03-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 AM354_RS21125 b49e9d05d7c34cf70c96b0a06bce74df 112 SMART SM00938 4 105 4.3E-68 T 29-03-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AM354_RS05015 8391568288c6d3fc33aacda0ed4eb23b 518 SUPERFAMILY SSF81296 405 517 1.68E-33 T 29-03-2018 IPR014756 Immunoglobulin E-set AM354_RS05015 8391568288c6d3fc33aacda0ed4eb23b 518 Hamap MF_01069 Glucans biosynthesis protein G [mdoG]. 6 516 62.325 T 29-03-2018 IPR023704 Glucan biosynthesis protein G AM354_RS05015 8391568288c6d3fc33aacda0ed4eb23b 518 Gene3D G3DSA:2.70.98.10 30 399 1.1E-166 T 29-03-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 AM354_RS05015 8391568288c6d3fc33aacda0ed4eb23b 518 SUPERFAMILY SSF74650 30 401 4.39E-164 T 29-03-2018 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 AM354_RS05015 8391568288c6d3fc33aacda0ed4eb23b 518 Pfam PF04349 Periplasmic glucan biosynthesis protein, MdoG 30 514 4.4E-197 T 29-03-2018 IPR007444 Glucan biosynthesis, periplasmic, MdoG C-terminal GO:0016051|GO:0042597 AM354_RS05015 8391568288c6d3fc33aacda0ed4eb23b 518 Gene3D G3DSA:2.60.40.10 405 518 5.8E-44 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS05015 8391568288c6d3fc33aacda0ed4eb23b 518 PIRSF PIRSF006281 5 518 3.1E-239 T 29-03-2018 IPR014438 Glucan biosynthesis, periplasmic, MdoG/D AM354_RS07630 513305210cf662a564aa50c21b775305 348 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS07630 513305210cf662a564aa50c21b775305 348 Pfam PF00005 ABC transporter 23 164 4.4E-36 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS07630 513305210cf662a564aa50c21b775305 348 Gene3D G3DSA:3.40.50.300 2 241 4.8E-76 T 29-03-2018 AM354_RS07630 513305210cf662a564aa50c21b775305 348 Pfam PF08402 TOBE domain 273 342 1.5E-9 T 29-03-2018 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 AM354_RS07630 513305210cf662a564aa50c21b775305 348 SUPERFAMILY SSF52540 7 244 1.1E-84 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS07630 513305210cf662a564aa50c21b775305 348 SMART SM00382 31 214 2.8E-17 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS07630 513305210cf662a564aa50c21b775305 348 SUPERFAMILY SSF50331 240 344 3.4E-14 T 29-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal AM354_RS07630 513305210cf662a564aa50c21b775305 348 Gene3D G3DSA:2.40.50.140 276 337 2.5E-7 T 29-03-2018 AM354_RS02405 7f5c2bc70736a60b2e482fb9a9c9847b 540 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 349 503 6.0E-37 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM354_RS02405 7f5c2bc70736a60b2e482fb9a9c9847b 540 SMART SM00304 234 288 1.3E-9 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM354_RS02405 7f5c2bc70736a60b2e482fb9a9c9847b 540 SMART SM00319 66 200 1.3E-8 T 29-03-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 AM354_RS02405 7f5c2bc70736a60b2e482fb9a9c9847b 540 Gene3D G3DSA:1.10.287.950 262 328 2.5E-4 T 29-03-2018 AM354_RS02405 7f5c2bc70736a60b2e482fb9a9c9847b 540 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 27 52 2.6E-39 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM354_RS02405 7f5c2bc70736a60b2e482fb9a9c9847b 540 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 310 339 2.6E-39 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM354_RS02405 7f5c2bc70736a60b2e482fb9a9c9847b 540 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 387 414 2.6E-39 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM354_RS02405 7f5c2bc70736a60b2e482fb9a9c9847b 540 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 464 493 2.6E-39 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM354_RS02405 7f5c2bc70736a60b2e482fb9a9c9847b 540 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 416 445 2.6E-39 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM354_RS02405 7f5c2bc70736a60b2e482fb9a9c9847b 540 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 82 97 2.6E-39 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM354_RS02405 7f5c2bc70736a60b2e482fb9a9c9847b 540 SUPERFAMILY SSF58104 264 537 4.19E-52 T 29-03-2018 AM354_RS02405 7f5c2bc70736a60b2e482fb9a9c9847b 540 SMART SM00283 289 536 1.1E-51 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM354_RS02405 7f5c2bc70736a60b2e482fb9a9c9847b 540 SUPERFAMILY SSF47170 47 198 7.72E-37 T 29-03-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 AM354_RS02405 7f5c2bc70736a60b2e482fb9a9c9847b 540 Pfam PF02203 Tar ligand binding domain homologue 27 193 8.8E-33 T 29-03-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 AM354_RS02405 7f5c2bc70736a60b2e482fb9a9c9847b 540 Gene3D G3DSA:1.10.287.950 329 540 1.8E-40 T 29-03-2018 AM354_RS02405 7f5c2bc70736a60b2e482fb9a9c9847b 540 Gene3D G3DSA:1.20.120.30 61 194 5.9E-25 T 29-03-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain AM354_RS10765 0016a5d4527ad25d78b4ad2725cf0865 283 TIGRFAM TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 1 271 1.7E-147 T 29-03-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 AM354_RS10765 0016a5d4527ad25d78b4ad2725cf0865 283 Gene3D G3DSA:3.60.21.10 1 280 8.9E-46 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like AM354_RS10765 0016a5d4527ad25d78b4ad2725cf0865 283 SUPERFAMILY SSF56300 1 259 1.26E-57 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like AM354_RS10765 0016a5d4527ad25d78b4ad2725cf0865 283 Pfam PF00149 Calcineurin-like phosphoesterase 2 127 8.2E-14 T 29-03-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AM354_RS10765 0016a5d4527ad25d78b4ad2725cf0865 283 Hamap MF_00199 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical [apaH]. 1 271 51.637 T 29-03-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 AM354_RS10765 0016a5d4527ad25d78b4ad2725cf0865 283 PIRSF PIRSF000903 1 274 7.4E-123 T 29-03-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 AM354_RS25580 fc8c913b422751fe007c8ad299295d4e 231 SUPERFAMILY SSF110857 47 161 3.53E-11 T 29-03-2018 IPR013024 Gamma-glutamyl cyclotransferase-like AM354_RS25580 fc8c913b422751fe007c8ad299295d4e 231 Gene3D G3DSA:3.10.490.10 31 221 1.5E-36 T 29-03-2018 AM354_RS25580 fc8c913b422751fe007c8ad299295d4e 231 Pfam PF04752 ChaC-like protein 47 215 1.9E-50 T 29-03-2018 IPR006840 Glutathione-specific gamma-glutamylcyclotransferase GO:0003839|GO:0006751 Reactome: R-HSA-174403 AM354_RS07975 fe5445219b380616fd9be6f1c15cba20 134 PIRSF PIRSF003230 1 134 2.7E-48 T 29-03-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 AM354_RS07975 fe5445219b380616fd9be6f1c15cba20 134 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 6 130 5.9E-51 T 29-03-2018 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 AM354_RS07975 fe5445219b380616fd9be6f1c15cba20 134 ProSitePatterns PS01328 4-hydroxybenzoyl-CoA thioesterase family active site. 11 28 - T 29-03-2018 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site GO:0016787 AM354_RS07975 fe5445219b380616fd9be6f1c15cba20 134 Pfam PF03061 Thioesterase superfamily 21 103 1.6E-19 T 29-03-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AM354_RS07975 fe5445219b380616fd9be6f1c15cba20 134 Gene3D G3DSA:3.10.129.10 2 134 2.4E-38 T 29-03-2018 AM354_RS07975 fe5445219b380616fd9be6f1c15cba20 134 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 9 125 4.7E-44 T 29-03-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 AM354_RS07975 fe5445219b380616fd9be6f1c15cba20 134 SUPERFAMILY SSF54637 4 133 3.65E-40 T 29-03-2018 IPR029069 HotDog domain AM354_RS15515 034e14ca9b12c883035ff258c4e90857 251 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 29-03-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AM354_RS15515 034e14ca9b12c883035ff258c4e90857 251 SMART SM00420 6 58 1.8E-18 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS15515 034e14ca9b12c883035ff258c4e90857 251 SMART SM01134 74 232 2.3E-33 T 29-03-2018 AM354_RS15515 034e14ca9b12c883035ff258c4e90857 251 SUPERFAMILY SSF100950 75 233 3.35E-22 T 29-03-2018 AM354_RS15515 034e14ca9b12c883035ff258c4e90857 251 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 2.2E-5 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS15515 034e14ca9b12c883035ff258c4e90857 251 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 2.2E-5 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS15515 034e14ca9b12c883035ff258c4e90857 251 Gene3D G3DSA:3.40.50.1360 74 238 5.3E-23 T 29-03-2018 AM354_RS15515 034e14ca9b12c883035ff258c4e90857 251 Gene3D G3DSA:1.10.10.10 1 59 6.0E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS15515 034e14ca9b12c883035ff258c4e90857 251 SUPERFAMILY SSF46785 4 59 9.82E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS15515 034e14ca9b12c883035ff258c4e90857 251 Pfam PF08220 DeoR-like helix-turn-helix domain 6 58 8.4E-17 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS15515 034e14ca9b12c883035ff258c4e90857 251 Pfam PF00455 DeoR C terminal sensor domain 76 230 2.3E-35 T 29-03-2018 IPR014036 DeoR C-terminal sensor domain AM354_RS16375 291caacd3abbde4b4bf154f2a50b528d 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 338 359 3.7E-55 T 29-03-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS16375 291caacd3abbde4b4bf154f2a50b528d 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 497 510 3.7E-55 T 29-03-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS16375 291caacd3abbde4b4bf154f2a50b528d 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 465 483 3.7E-55 T 29-03-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS16375 291caacd3abbde4b4bf154f2a50b528d 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 150 169 3.7E-55 T 29-03-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS16375 291caacd3abbde4b4bf154f2a50b528d 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 261 279 3.7E-55 T 29-03-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS16375 291caacd3abbde4b4bf154f2a50b528d 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 483 497 3.7E-55 T 29-03-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS16375 291caacd3abbde4b4bf154f2a50b528d 548 SUPERFAMILY SSF53697 5 547 2.78E-227 T 29-03-2018 AM354_RS16375 291caacd3abbde4b4bf154f2a50b528d 548 Gene3D G3DSA:1.10.1390.10 513 548 9.0E-21 T 29-03-2018 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS16375 291caacd3abbde4b4bf154f2a50b528d 548 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 497 514 - T 29-03-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS16375 291caacd3abbde4b4bf154f2a50b528d 548 Pfam PF00342 Phosphoglucose isomerase 52 541 1.8E-254 T 29-03-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS16375 291caacd3abbde4b4bf154f2a50b528d 548 Gene3D G3DSA:3.40.50.10490 7 138 2.5E-46 T 29-03-2018 AM354_RS16375 291caacd3abbde4b4bf154f2a50b528d 548 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 265 278 - T 29-03-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS16375 291caacd3abbde4b4bf154f2a50b528d 548 Gene3D G3DSA:3.40.50.10490 139 258 1.6E-54 T 29-03-2018 AM354_RS16375 291caacd3abbde4b4bf154f2a50b528d 548 Gene3D G3DSA:3.40.50.10490 259 512 8.2E-126 T 29-03-2018 AM354_RS16375 291caacd3abbde4b4bf154f2a50b528d 548 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 46 524 42.737 T 29-03-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS09350 b3c711413fea3372ff562b1daa49ea84 96 Gene3D G3DSA:2.60.120.10 3 93 7.5E-34 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS09350 b3c711413fea3372ff562b1daa49ea84 96 SUPERFAMILY SSF51182 1 94 1.09E-31 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS09350 b3c711413fea3372ff562b1daa49ea84 96 Pfam PF06865 Protein of unknown function (DUF1255) 3 93 3.4E-32 T 29-03-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase AM354_RS09350 b3c711413fea3372ff562b1daa49ea84 96 Hamap MF_01537 UPF0345 protein YaiE [yaiE]. 1 94 25.074 T 29-03-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase AM354_RS18880 9873e5e2c43a5243de9ccdfb43931834 187 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 1 187 39.425 T 29-03-2018 IPR003774 Protein of unknown function UPF0301 AM354_RS18880 9873e5e2c43a5243de9ccdfb43931834 187 SUPERFAMILY SSF143456 1 187 4.32E-66 T 29-03-2018 AM354_RS18880 9873e5e2c43a5243de9ccdfb43931834 187 Pfam PF02622 Uncharacterized ACR, COG1678 12 174 6.5E-49 T 29-03-2018 IPR003774 Protein of unknown function UPF0301 AM354_RS18880 9873e5e2c43a5243de9ccdfb43931834 187 Gene3D G3DSA:3.40.1740.10 1 94 1.1E-27 T 29-03-2018 AM354_RS18880 9873e5e2c43a5243de9ccdfb43931834 187 Gene3D G3DSA:3.40.1740.10 105 179 1.0E-11 T 29-03-2018 AM354_RS08530 911288dac614863ded27a7215c860465 288 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 124 281 3.0E-69 T 29-03-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 AM354_RS08530 911288dac614863ded27a7215c860465 288 Gene3D G3DSA:3.40.50.720 141 264 1.9E-39 T 29-03-2018 AM354_RS08530 911288dac614863ded27a7215c860465 288 SUPERFAMILY SSF53223 1 122 1.53E-40 T 29-03-2018 AM354_RS08530 911288dac614863ded27a7215c860465 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 34 56 7.3E-89 T 29-03-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 AM354_RS08530 911288dac614863ded27a7215c860465 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 256 274 7.3E-89 T 29-03-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 AM354_RS08530 911288dac614863ded27a7215c860465 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 75 102 7.3E-89 T 29-03-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 AM354_RS08530 911288dac614863ded27a7215c860465 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 155 175 7.3E-89 T 29-03-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 AM354_RS08530 911288dac614863ded27a7215c860465 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 239 255 7.3E-89 T 29-03-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 AM354_RS08530 911288dac614863ded27a7215c860465 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 110 131 7.3E-89 T 29-03-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 AM354_RS08530 911288dac614863ded27a7215c860465 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 204 233 7.3E-89 T 29-03-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 AM354_RS08530 911288dac614863ded27a7215c860465 288 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 5 121 9.1E-40 T 29-03-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 AM354_RS08530 911288dac614863ded27a7215c860465 288 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 76 101 - T 29-03-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 AM354_RS08530 911288dac614863ded27a7215c860465 288 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 260 268 - T 29-03-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 AM354_RS08530 911288dac614863ded27a7215c860465 288 Gene3D G3DSA:3.40.50.10860 11 140 1.9E-50 T 29-03-2018 AM354_RS08530 911288dac614863ded27a7215c860465 288 SUPERFAMILY SSF51735 123 285 3.64E-53 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS08530 911288dac614863ded27a7215c860465 288 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 283 38.563 T 29-03-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 AM354_RS24080 b1fe283ccbbff9a5116533d57d7464d2 467 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 209 216 - T 29-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AM354_RS24080 b1fe283ccbbff9a5116533d57d7464d2 467 Pfam PF00171 Aldehyde dehydrogenase family 10 434 1.7E-87 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM354_RS24080 b1fe283ccbbff9a5116533d57d7464d2 467 Gene3D G3DSA:3.40.309.10 229 416 7.2E-51 T 29-03-2018 AM354_RS24080 b1fe283ccbbff9a5116533d57d7464d2 467 PIRSF PIRSF036492 1 467 2.1E-150 T 29-03-2018 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0004030|GO:0006081|GO:0055114 AM354_RS24080 b1fe283ccbbff9a5116533d57d7464d2 467 Gene3D G3DSA:3.40.605.10 2 228 2.3E-59 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM354_RS24080 b1fe283ccbbff9a5116533d57d7464d2 467 SUPERFAMILY SSF53720 3 443 3.14E-113 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM354_RS24080 b1fe283ccbbff9a5116533d57d7464d2 467 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 237 248 - T 29-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AM354_RS06365 0805e86de1a9739e884a8be61d9028d6 450 Pfam PF03606 C4-dicarboxylate anaerobic carrier 3 448 1.1E-125 T 29-03-2018 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 AM354_RS06365 0805e86de1a9739e884a8be61d9028d6 450 TIGRFAM TIGR00771 DcuC: transporter, anaerobic C4-dicarboxylate uptake C (DcuC) family 55 438 5.9E-174 T 29-03-2018 IPR004669 C4-dicarboxylate anaerobic carrier GO:0015556|GO:0015740|GO:0016021 AM354_RS04765 9ce0a9c639d95a08c28ebc3ae73de7ef 249 Gene3D G3DSA:3.40.50.720 1 48 8.4E-12 T 29-03-2018 AM354_RS04765 9ce0a9c639d95a08c28ebc3ae73de7ef 249 Gene3D G3DSA:3.40.50.720 49 248 7.4E-50 T 29-03-2018 AM354_RS04765 9ce0a9c639d95a08c28ebc3ae73de7ef 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 4.8E-29 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS04765 9ce0a9c639d95a08c28ebc3ae73de7ef 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 4.8E-29 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS04765 9ce0a9c639d95a08c28ebc3ae73de7ef 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 4.8E-29 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS04765 9ce0a9c639d95a08c28ebc3ae73de7ef 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 4.8E-29 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS04765 9ce0a9c639d95a08c28ebc3ae73de7ef 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 4.8E-29 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS04765 9ce0a9c639d95a08c28ebc3ae73de7ef 249 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 181 6.3E-5 T 29-03-2018 AM354_RS04765 9ce0a9c639d95a08c28ebc3ae73de7ef 249 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 246 2.2E-52 T 29-03-2018 AM354_RS04765 9ce0a9c639d95a08c28ebc3ae73de7ef 249 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 137 165 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM354_RS04765 9ce0a9c639d95a08c28ebc3ae73de7ef 249 SUPERFAMILY SSF51735 1 246 8.16E-69 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS06815 383a8407def2806b3b6ae8727e78bcf9 167 SUPERFAMILY SSF47240 10 167 7.77E-49 T 29-03-2018 IPR009078 Ferritin-like superfamily AM354_RS06815 383a8407def2806b3b6ae8727e78bcf9 167 PIRSF PIRSF005900 8 167 2.2E-41 T 29-03-2018 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 AM354_RS06815 383a8407def2806b3b6ae8727e78bcf9 167 Pfam PF00210 Ferritin-like domain 30 166 3.0E-24 T 29-03-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 AM354_RS06815 383a8407def2806b3b6ae8727e78bcf9 167 Gene3D G3DSA:1.20.1260.10 2 167 2.2E-40 T 29-03-2018 IPR012347 Ferritin-related AM354_RS06815 383a8407def2806b3b6ae8727e78bcf9 167 Hamap MF_01441 DNA protection during starvation protein [dps]. 1 167 44.414 T 29-03-2018 IPR023067 DNA protection during starvation protein, gammaproteobacteria GO:0016722|GO:0055114 AM354_RS06815 383a8407def2806b3b6ae8727e78bcf9 167 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 51 67 1.3E-12 T 29-03-2018 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 AM354_RS06815 383a8407def2806b3b6ae8727e78bcf9 167 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 144 162 1.3E-12 T 29-03-2018 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 AM354_RS06815 383a8407def2806b3b6ae8727e78bcf9 167 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 75 91 1.3E-12 T 29-03-2018 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 AM354_RS06815 383a8407def2806b3b6ae8727e78bcf9 167 ProSitePatterns PS00818 Dps protein family signature 1. 51 67 - T 29-03-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 AM354_RS06655 25ff1e154efb6bafafd643d2854dc53e 156 PIRSF PIRSF028065 9 154 3.5E-24 T 29-03-2018 IPR016865 Inner membrane protein RclC AM354_RS06655 25ff1e154efb6bafafd643d2854dc53e 156 Pfam PF04224 Protein of unknown function, DUF417 58 150 1.7E-23 T 29-03-2018 IPR007339 Protein of unknown function DUF417 AM354_RS17835 0006022cf3046ec09a89369903dead23 430 Gene3D G3DSA:2.40.50.100 131 246 3.3E-10 T 29-03-2018 AM354_RS17835 0006022cf3046ec09a89369903dead23 430 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 206 398 2.4E-37 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AM354_RS17835 0006022cf3046ec09a89369903dead23 430 SUPERFAMILY SSF111369 126 326 1.2E-11 T 29-03-2018 AM354_RS17835 0006022cf3046ec09a89369903dead23 430 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 115 321 9.8E-63 T 29-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AM354_RS18925 f7f01823f0ea203ebff913c1f21c14d6 929 Gene3D G3DSA:3.30.365.10 276 360 5.6E-14 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS18925 f7f01823f0ea203ebff913c1f21c14d6 929 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 637 868 1.6E-19 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS18925 f7f01823f0ea203ebff913c1f21c14d6 929 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 264 607 1.4E-55 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS18925 f7f01823f0ea203ebff913c1f21c14d6 929 Gene3D G3DSA:3.30.365.10 754 929 3.4E-34 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS18925 f7f01823f0ea203ebff913c1f21c14d6 929 SUPERFAMILY SSF56003 637 741 1.3E-115 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS18925 f7f01823f0ea203ebff913c1f21c14d6 929 SUPERFAMILY SSF56003 784 928 1.3E-115 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS18925 f7f01823f0ea203ebff913c1f21c14d6 929 SUPERFAMILY SSF56003 263 609 1.3E-115 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS18925 f7f01823f0ea203ebff913c1f21c14d6 929 Gene3D G3DSA:3.30.365.10 539 746 5.5E-30 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS18925 f7f01823f0ea203ebff913c1f21c14d6 929 SUPERFAMILY SSF54665 54 175 1.24E-11 T 29-03-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AM354_RS18925 f7f01823f0ea203ebff913c1f21c14d6 929 Gene3D G3DSA:3.90.1170.50 35 177 2.4E-8 T 29-03-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AM354_RS18925 f7f01823f0ea203ebff913c1f21c14d6 929 Gene3D G3DSA:3.30.365.10 361 527 2.0E-29 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS01230 d07f6e224d1ebd7034357e018e98579a 75 Pfam PF06667 Phage shock protein B 4 74 9.1E-34 T 29-03-2018 IPR009554 Phage shock protein B GO:0006355|GO:0009271 AM354_RS01230 d07f6e224d1ebd7034357e018e98579a 75 TIGRFAM TIGR02976 phageshock_pspB: phage shock protein B 1 74 1.4E-34 T 29-03-2018 IPR009554 Phage shock protein B GO:0006355|GO:0009271 AM354_RS10770 146984f0eb86260faac9440ed120f016 629 Pfam PF05787 Bacterial protein of unknown function (DUF839) 58 598 4.4E-189 T 29-03-2018 IPR008557 Protein of unknown function DUF839 AM354_RS10770 146984f0eb86260faac9440ed120f016 629 SUPERFAMILY SSF101898 293 377 8.37E-14 T 29-03-2018 AM354_RS10770 146984f0eb86260faac9440ed120f016 629 SUPERFAMILY SSF101898 410 492 8.37E-14 T 29-03-2018 AM354_RS10770 146984f0eb86260faac9440ed120f016 629 SUPERFAMILY SSF101898 520 592 8.37E-14 T 29-03-2018 AM354_RS10770 146984f0eb86260faac9440ed120f016 629 Gene3D G3DSA:2.120.10.30 92 624 3.6E-9 T 29-03-2018 IPR011042 Six-bladed beta-propeller, TolB-like AM354_RS00195 bb17e2a57aafcbfc134b1a2818b72955 176 Gene3D G3DSA:1.20.1550.10 1 176 1.2E-55 T 29-03-2018 IPR023380 Disulphide bond formation protein DsbB-like domain AM354_RS00195 bb17e2a57aafcbfc134b1a2818b72955 176 SUPERFAMILY SSF158442 15 161 1.83E-46 T 29-03-2018 IPR023380 Disulphide bond formation protein DsbB-like domain AM354_RS00195 bb17e2a57aafcbfc134b1a2818b72955 176 Hamap MF_00286 Disulfide bond formation protein B [dsbB]. 7 167 22.475 T 29-03-2018 IPR022920 Disulphide bond formation protein DsbB AM354_RS00195 bb17e2a57aafcbfc134b1a2818b72955 176 Pfam PF02600 Disulfide bond formation protein DsbB 12 159 1.5E-45 T 29-03-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 AM354_RS07150 a990face97f25cad043bc3310d58253e 422 SUPERFAMILY SSF53822 30 409 5.5E-93 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS07150 a990face97f25cad043bc3310d58253e 422 Pfam PF13433 Periplasmic binding protein domain 31 407 6.2E-172 T 29-03-2018 AM354_RS07150 a990face97f25cad043bc3310d58253e 422 Gene3D G3DSA:3.40.50.2300 156 345 9.5E-30 T 29-03-2018 AM354_RS07150 a990face97f25cad043bc3310d58253e 422 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 53 69 6.3E-6 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AM354_RS07150 a990face97f25cad043bc3310d58253e 422 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 31 47 6.3E-6 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AM354_RS07150 a990face97f25cad043bc3310d58253e 422 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 290 303 6.3E-6 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AM354_RS07150 a990face97f25cad043bc3310d58253e 422 TIGRFAM TIGR03407 urea_ABC_UrtA: urea ABC transporter, urea binding protein 31 404 2.6E-177 T 29-03-2018 IPR017777 Urea ABC transporter, substrate-binding protein UrtA-like AM354_RS07150 a990face97f25cad043bc3310d58253e 422 Gene3D G3DSA:3.40.50.2300 26 155 6.2E-23 T 29-03-2018 AM354_RS09595 3e1f54f3a3da6347797c6645b0f6b95a 213 ProSitePatterns PS00194 Thioredoxin family active site. 46 64 - T 29-03-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AM354_RS09595 3e1f54f3a3da6347797c6645b0f6b95a 213 PIRSF PIRSF001488 5 212 7.3E-58 T 29-03-2018 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL AM354_RS09595 3e1f54f3a3da6347797c6645b0f6b95a 213 Pfam PF01323 DSBA-like thioredoxin domain 46 200 2.1E-18 T 29-03-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590 AM354_RS09595 3e1f54f3a3da6347797c6645b0f6b95a 213 SUPERFAMILY SSF52833 27 189 1.23E-33 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS09595 3e1f54f3a3da6347797c6645b0f6b95a 213 Gene3D G3DSA:3.40.30.10 22 212 1.2E-28 T 29-03-2018 AM354_RS08955 089959eab08a3b452bb44d8ddb5c587c 403 PRINTS PR00812 Bacterial general secretion pathway protein F signature 367 381 3.7E-40 T 29-03-2018 IPR003004 GspF/PilC family AM354_RS08955 089959eab08a3b452bb44d8ddb5c587c 403 PRINTS PR00812 Bacterial general secretion pathway protein F signature 383 402 3.7E-40 T 29-03-2018 IPR003004 GspF/PilC family AM354_RS08955 089959eab08a3b452bb44d8ddb5c587c 403 PRINTS PR00812 Bacterial general secretion pathway protein F signature 65 77 3.7E-40 T 29-03-2018 IPR003004 GspF/PilC family AM354_RS08955 089959eab08a3b452bb44d8ddb5c587c 403 PRINTS PR00812 Bacterial general secretion pathway protein F signature 164 192 3.7E-40 T 29-03-2018 IPR003004 GspF/PilC family AM354_RS08955 089959eab08a3b452bb44d8ddb5c587c 403 Pfam PF00482 Type II secretion system (T2SS), protein F 70 192 5.1E-31 T 29-03-2018 IPR018076 Type II secretion system F domain AM354_RS08955 089959eab08a3b452bb44d8ddb5c587c 403 Pfam PF00482 Type II secretion system (T2SS), protein F 274 393 7.6E-21 T 29-03-2018 IPR018076 Type II secretion system F domain AM354_RS08955 089959eab08a3b452bb44d8ddb5c587c 403 TIGRFAM TIGR02120 GspF: type II secretion system protein F 3 402 3.1E-149 T 29-03-2018 IPR011850 General secretion pathway protein F GO:0008565|GO:0015627|GO:0015628 AM354_RS08955 089959eab08a3b452bb44d8ddb5c587c 403 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 164 192 - T 29-03-2018 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 AM354_RS15860 ce8ee19ae448156b6d73b46a6d3a4a0a 77 Gene3D G3DSA:1.10.10.610 1 71 3.4E-35 T 29-03-2018 IPR010648 Uncharacterised protein family UPF0270 AM354_RS15860 ce8ee19ae448156b6d73b46a6d3a4a0a 77 PIRSF PIRSF006169 1 76 1.0E-37 T 29-03-2018 IPR010648 Uncharacterised protein family UPF0270 AM354_RS15860 ce8ee19ae448156b6d73b46a6d3a4a0a 77 Pfam PF06794 Uncharacterised protein family (UPF0270) 2 68 1.1E-34 T 29-03-2018 IPR010648 Uncharacterised protein family UPF0270 AM354_RS15860 ce8ee19ae448156b6d73b46a6d3a4a0a 77 Hamap MF_00690 UPF0270 protein YheU [yheU]. 1 70 24.549 T 29-03-2018 IPR010648 Uncharacterised protein family UPF0270 AM354_RS15860 ce8ee19ae448156b6d73b46a6d3a4a0a 77 SUPERFAMILY SSF118001 1 72 1.31E-29 T 29-03-2018 IPR010648 Uncharacterised protein family UPF0270 AM354_RS15860 ce8ee19ae448156b6d73b46a6d3a4a0a 77 ProDom PD026997 UPF0270 YHEU SO0879 3D-STRUCTURE LYASE PLU0398 YPO0179/Y3960/YP0178 ENOLASE HD0737 PSPTO1630 1 67 6.0E-27 T 29-03-2018 IPR010648 Uncharacterised protein family UPF0270 AM354_RS09265 773355659795e67539548e5ee5d269fc 607 SUPERFAMILY SSF51445 113 527 1.21E-91 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily AM354_RS09265 773355659795e67539548e5ee5d269fc 607 SUPERFAMILY SSF51011 527 604 9.81E-7 T 29-03-2018 AM354_RS09265 773355659795e67539548e5ee5d269fc 607 Pfam PF00128 Alpha amylase, catalytic domain 174 490 6.3E-76 T 29-03-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AM354_RS09265 773355659795e67539548e5ee5d269fc 607 Gene3D G3DSA:2.60.40.1180 522 606 1.9E-11 T 29-03-2018 AM354_RS09265 773355659795e67539548e5ee5d269fc 607 Gene3D G3DSA:3.20.20.80 112 520 1.5E-86 T 29-03-2018 AM354_RS09265 773355659795e67539548e5ee5d269fc 607 Gene3D G3DSA:2.60.40.10 3 108 8.5E-8 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS09265 773355659795e67539548e5ee5d269fc 607 SUPERFAMILY SSF81296 6 102 3.73E-5 T 29-03-2018 IPR014756 Immunoglobulin E-set AM354_RS09265 773355659795e67539548e5ee5d269fc 607 PIRSF PIRSF036918 1 606 5.3E-231 T 29-03-2018 IPR017069 Maltodextrin glucosidase GO:0004558|GO:0005737|GO:0005975 KEGG: 00052+3.2.1.20|KEGG: 00500+3.2.1.20|MetaCyc: PWY-842 AM354_RS09265 773355659795e67539548e5ee5d269fc 607 SMART SM00642 124 518 6.8E-88 T 29-03-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AM354_RS09265 773355659795e67539548e5ee5d269fc 607 Pfam PF02903 Alpha amylase, N-terminal ig-like domain 1 102 2.1E-12 T 29-03-2018 IPR004185 Glycoside hydrolase, family 13, N-terminal Ig-like domain GO:0004553|GO:0005975 AM354_RS20560 9911e94bf818667b82ca4d478a65d5c5 393 Pfam PF07690 Major Facilitator Superfamily 18 258 1.7E-14 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS20560 9911e94bf818667b82ca4d478a65d5c5 393 Gene3D G3DSA:1.20.1250.20 201 393 6.2E-18 T 29-03-2018 AM354_RS20560 9911e94bf818667b82ca4d478a65d5c5 393 SUPERFAMILY SSF103473 6 389 8.76E-48 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS20560 9911e94bf818667b82ca4d478a65d5c5 393 Gene3D G3DSA:1.20.1250.20 6 196 2.4E-19 T 29-03-2018 AM354_RS26010 cd7027e44fe7ad1ede401db5126f7c8e 392 TIGRFAM TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2 14 390 3.5E-191 T 29-03-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 AM354_RS26010 cd7027e44fe7ad1ede401db5126f7c8e 392 Pfam PF02222 ATP-grasp domain 123 295 3.0E-56 T 29-03-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type AM354_RS26010 cd7027e44fe7ad1ede401db5126f7c8e 392 Pfam PF01370 NAD dependent epimerase/dehydratase family 19 81 1.3E-4 T 29-03-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AM354_RS26010 cd7027e44fe7ad1ede401db5126f7c8e 392 SUPERFAMILY SSF52440 3 112 1.37E-36 T 29-03-2018 IPR016185 Pre-ATP-grasp domain AM354_RS26010 cd7027e44fe7ad1ede401db5126f7c8e 392 Gene3D G3DSA:3.40.50.20 7 129 3.8E-21 T 29-03-2018 AM354_RS26010 cd7027e44fe7ad1ede401db5126f7c8e 392 SUPERFAMILY SSF56059 113 314 2.65E-57 T 29-03-2018 AM354_RS26010 cd7027e44fe7ad1ede401db5126f7c8e 392 SUPERFAMILY SSF51246 319 391 3.45E-18 T 29-03-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AM354_RS26010 cd7027e44fe7ad1ede401db5126f7c8e 392 Gene3D G3DSA:3.30.1490.20 130 196 2.6E-21 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AM354_RS26010 cd7027e44fe7ad1ede401db5126f7c8e 392 Hamap MF_01643 Phosphoribosylglycinamide formyltransferase 2 [purT]. 8 391 52.069 T 29-03-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 AM354_RS26010 cd7027e44fe7ad1ede401db5126f7c8e 392 Gene3D G3DSA:3.30.470.20 198 392 5.4E-36 T 29-03-2018 AM354_RS19135 a9ccec66e9a2dbb8853e2aaf4dcb6a51 658 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 124 142 - T 29-03-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site AM354_RS19135 a9ccec66e9a2dbb8853e2aaf4dcb6a51 658 SUPERFAMILY SSF51419 92 369 2.99E-67 T 29-03-2018 IPR029066 PLP-binding barrel AM354_RS19135 a9ccec66e9a2dbb8853e2aaf4dcb6a51 658 Gene3D G3DSA:3.20.20.10 105 367 4.3E-40 T 29-03-2018 IPR029066 PLP-binding barrel AM354_RS19135 a9ccec66e9a2dbb8853e2aaf4dcb6a51 658 SUPERFAMILY SSF50621 482 586 3.31E-7 T 29-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AM354_RS19135 a9ccec66e9a2dbb8853e2aaf4dcb6a51 658 Gene3D G3DSA:2.40.37.10 422 604 2.8E-62 T 29-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AM354_RS19135 a9ccec66e9a2dbb8853e2aaf4dcb6a51 658 Gene3D G3DSA:2.40.37.10 22 104 3.1E-13 T 29-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AM354_RS19135 a9ccec66e9a2dbb8853e2aaf4dcb6a51 658 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 301 314 - T 29-03-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site AM354_RS19135 a9ccec66e9a2dbb8853e2aaf4dcb6a51 658 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 100 367 1.5E-68 T 29-03-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 AM354_RS19135 a9ccec66e9a2dbb8853e2aaf4dcb6a51 658 PRINTS PR01180 Arginine decarboxylase signature 347 364 1.6E-73 T 29-03-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 AM354_RS19135 a9ccec66e9a2dbb8853e2aaf4dcb6a51 658 PRINTS PR01180 Arginine decarboxylase signature 488 509 1.6E-73 T 29-03-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 AM354_RS19135 a9ccec66e9a2dbb8853e2aaf4dcb6a51 658 PRINTS PR01180 Arginine decarboxylase signature 116 130 1.6E-73 T 29-03-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 AM354_RS19135 a9ccec66e9a2dbb8853e2aaf4dcb6a51 658 PRINTS PR01180 Arginine decarboxylase signature 170 185 1.6E-73 T 29-03-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 AM354_RS19135 a9ccec66e9a2dbb8853e2aaf4dcb6a51 658 PRINTS PR01180 Arginine decarboxylase signature 220 242 1.6E-73 T 29-03-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 AM354_RS19135 a9ccec66e9a2dbb8853e2aaf4dcb6a51 658 PRINTS PR01180 Arginine decarboxylase signature 196 217 1.6E-73 T 29-03-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 AM354_RS19135 a9ccec66e9a2dbb8853e2aaf4dcb6a51 658 PRINTS PR01180 Arginine decarboxylase signature 513 538 1.6E-73 T 29-03-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 AM354_RS19135 a9ccec66e9a2dbb8853e2aaf4dcb6a51 658 PRINTS PR01180 Arginine decarboxylase signature 566 587 1.6E-73 T 29-03-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 AM354_RS19135 a9ccec66e9a2dbb8853e2aaf4dcb6a51 658 PRINTS PR01180 Arginine decarboxylase signature 92 107 1.6E-73 T 29-03-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 AM354_RS19135 a9ccec66e9a2dbb8853e2aaf4dcb6a51 658 PIRSF PIRSF001336 17 658 3.7E-253 T 29-03-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 AM354_RS19135 a9ccec66e9a2dbb8853e2aaf4dcb6a51 658 Hamap MF_01417 Biosynthetic arginine decarboxylase [speA]. 28 657 42.896 T 29-03-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 AM354_RS19135 a9ccec66e9a2dbb8853e2aaf4dcb6a51 658 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 263 276 4.0E-19 T 29-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AM354_RS19135 a9ccec66e9a2dbb8853e2aaf4dcb6a51 658 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 124 142 4.0E-19 T 29-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AM354_RS19135 a9ccec66e9a2dbb8853e2aaf4dcb6a51 658 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 357 376 4.0E-19 T 29-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AM354_RS19135 a9ccec66e9a2dbb8853e2aaf4dcb6a51 658 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 566 579 4.0E-19 T 29-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AM354_RS19135 a9ccec66e9a2dbb8853e2aaf4dcb6a51 658 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 146 158 4.0E-19 T 29-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AM354_RS19135 a9ccec66e9a2dbb8853e2aaf4dcb6a51 658 TIGRFAM TIGR01273 speA: arginine decarboxylase 32 656 3.5E-270 T 29-03-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 AM354_RS04500 33a42ee39f0a7bc9047c16047feb84a0 271 Gene3D G3DSA:3.40.190.10 127 271 5.1E-50 T 29-03-2018 AM354_RS04500 33a42ee39f0a7bc9047c16047feb84a0 271 Gene3D G3DSA:3.40.190.10 32 126 2.4E-20 T 29-03-2018 AM354_RS04500 33a42ee39f0a7bc9047c16047feb84a0 271 SUPERFAMILY SSF53850 33 271 1.36E-76 T 29-03-2018 AM354_RS04500 33a42ee39f0a7bc9047c16047feb84a0 271 Pfam PF03180 NLPA lipoprotein 33 271 1.3E-94 T 29-03-2018 IPR004872 Lipoprotein NlpA family AM354_RS04500 33a42ee39f0a7bc9047c16047feb84a0 271 PIRSF PIRSF002854 1 271 5.1E-98 T 29-03-2018 IPR004872 Lipoprotein NlpA family AM354_RS04500 33a42ee39f0a7bc9047c16047feb84a0 271 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 16 271 8.5E-124 T 29-03-2018 IPR004872 Lipoprotein NlpA family AM354_RS04165 248898244deec274c81635f466c4500f 148 PRINTS PR00502 NUDIX hydrolase family signature 31 45 1.6E-5 T 29-03-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AM354_RS04165 248898244deec274c81635f466c4500f 148 PRINTS PR00502 NUDIX hydrolase family signature 45 60 1.6E-5 T 29-03-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AM354_RS04165 248898244deec274c81635f466c4500f 148 Gene3D G3DSA:3.90.79.10 1 146 1.2E-29 T 29-03-2018 AM354_RS04165 248898244deec274c81635f466c4500f 148 SUPERFAMILY SSF55811 2 117 1.9E-29 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 AM354_RS04165 248898244deec274c81635f466c4500f 148 Pfam PF00293 NUDIX domain 4 115 2.8E-17 T 29-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AM354_RS04165 248898244deec274c81635f466c4500f 148 ProSitePatterns PS00893 Nudix box signature. 36 57 - T 29-03-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AM354_RS13105 f5a89a2fe9e23690e1d141c4bdeb98f4 772 Gene3D G3DSA:3.40.1110.10 487 595 2.5E-27 T 29-03-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AM354_RS13105 f5a89a2fe9e23690e1d141c4bdeb98f4 772 SUPERFAMILY SSF56784 467 487 1.37E-53 T 29-03-2018 IPR023214 HAD-like domain AM354_RS13105 f5a89a2fe9e23690e1d141c4bdeb98f4 772 SUPERFAMILY SSF56784 526 765 1.37E-53 T 29-03-2018 IPR023214 HAD-like domain AM354_RS13105 f5a89a2fe9e23690e1d141c4bdeb98f4 772 ProSitePatterns PS01047 Heavy-metal-associated domain. 87 116 - T 29-03-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 AM354_RS13105 f5a89a2fe9e23690e1d141c4bdeb98f4 772 SUPERFAMILY SSF55008 81 144 1.44E-14 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AM354_RS13105 f5a89a2fe9e23690e1d141c4bdeb98f4 772 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 218 527 5.8E-96 T 29-03-2018 AM354_RS13105 f5a89a2fe9e23690e1d141c4bdeb98f4 772 SUPERFAMILY SSF81665 714 753 5.75E-19 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 AM354_RS13105 f5a89a2fe9e23690e1d141c4bdeb98f4 772 SUPERFAMILY SSF81665 369 463 5.75E-19 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 AM354_RS13105 f5a89a2fe9e23690e1d141c4bdeb98f4 772 SUPERFAMILY SSF81665 221 272 5.75E-19 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 AM354_RS13105 f5a89a2fe9e23690e1d141c4bdeb98f4 772 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 241 743 9.1E-80 T 29-03-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AM354_RS13105 f5a89a2fe9e23690e1d141c4bdeb98f4 772 SUPERFAMILY SSF81653 271 368 3.01E-19 T 29-03-2018 IPR008250 P-type ATPase, A domain Reactome: R-HSA-936837 AM354_RS13105 f5a89a2fe9e23690e1d141c4bdeb98f4 772 Gene3D G3DSA:3.30.70.100 78 149 2.6E-15 T 29-03-2018 AM354_RS13105 f5a89a2fe9e23690e1d141c4bdeb98f4 772 Pfam PF00702 haloacid dehalogenase-like hydrolase 465 677 2.6E-35 T 29-03-2018 AM354_RS13105 f5a89a2fe9e23690e1d141c4bdeb98f4 772 Pfam PF00403 Heavy-metal-associated domain 87 142 2.8E-11 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AM354_RS13105 f5a89a2fe9e23690e1d141c4bdeb98f4 772 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 665 684 3.3E-29 T 29-03-2018 AM354_RS13105 f5a89a2fe9e23690e1d141c4bdeb98f4 772 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 592 603 3.3E-29 T 29-03-2018 AM354_RS13105 f5a89a2fe9e23690e1d141c4bdeb98f4 772 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 318 332 3.3E-29 T 29-03-2018 AM354_RS13105 f5a89a2fe9e23690e1d141c4bdeb98f4 772 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 614 624 3.3E-29 T 29-03-2018 AM354_RS13105 f5a89a2fe9e23690e1d141c4bdeb98f4 772 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 469 483 3.3E-29 T 29-03-2018 AM354_RS13105 f5a89a2fe9e23690e1d141c4bdeb98f4 772 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 688 700 3.3E-29 T 29-03-2018 AM354_RS13105 f5a89a2fe9e23690e1d141c4bdeb98f4 772 Pfam PF00122 E1-E2 ATPase 269 448 1.6E-46 T 29-03-2018 AM354_RS13105 f5a89a2fe9e23690e1d141c4bdeb98f4 772 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 218 767 7.1E-177 T 29-03-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AM354_RS13105 f5a89a2fe9e23690e1d141c4bdeb98f4 772 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 471 477 - T 29-03-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 AM354_RS13105 f5a89a2fe9e23690e1d141c4bdeb98f4 772 Gene3D G3DSA:3.40.50.1000 596 732 5.3E-37 T 29-03-2018 IPR023214 HAD-like domain AM354_RS13105 f5a89a2fe9e23690e1d141c4bdeb98f4 772 Gene3D G3DSA:1.20.1110.10 165 486 4.9E-31 T 29-03-2018 AM354_RS13105 f5a89a2fe9e23690e1d141c4bdeb98f4 772 PRINTS PR00941 Cadmium-transporting ATPase signature 85 94 1.6E-5 T 29-03-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AM354_RS13105 f5a89a2fe9e23690e1d141c4bdeb98f4 772 PRINTS PR00941 Cadmium-transporting ATPase signature 253 273 1.6E-5 T 29-03-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AM354_RS13105 f5a89a2fe9e23690e1d141c4bdeb98f4 772 PRINTS PR00941 Cadmium-transporting ATPase signature 96 117 1.6E-5 T 29-03-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AM354_RS14080 059ef034163f684c8c4c5bb16cb1e076 322 Gene3D G3DSA:1.10.3470.10 19 319 5.0E-40 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS14080 059ef034163f684c8c4c5bb16cb1e076 322 Pfam PF02653 Branched-chain amino acid transport system / permease component 45 313 1.9E-52 T 29-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AM354_RS02470 5659218ca4ef803a5e64517409acf13e 298 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 12 276 1.8E-59 T 29-03-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 AM354_RS02470 5659218ca4ef803a5e64517409acf13e 298 Gene3D G3DSA:3.10.310.10 137 287 9.3E-28 T 29-03-2018 AM354_RS02470 5659218ca4ef803a5e64517409acf13e 298 Gene3D G3DSA:3.10.310.10 7 136 4.9E-30 T 29-03-2018 AM354_RS02470 5659218ca4ef803a5e64517409acf13e 298 PIRSF PIRSF016184 8 298 1.1E-71 T 29-03-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 AM354_RS02470 5659218ca4ef803a5e64517409acf13e 298 Pfam PF02567 Phenazine biosynthesis-like protein 15 276 6.1E-57 T 29-03-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 AM354_RS02470 5659218ca4ef803a5e64517409acf13e 298 SUPERFAMILY SSF54506 11 296 1.67E-69 T 29-03-2018 AM354_RS19260 ab27b25744f403ba6af4b5917fc5bf67 321 Pfam PF00175 Oxidoreductase NAD-binding domain 117 206 1.2E-5 T 29-03-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AM354_RS19260 ab27b25744f403ba6af4b5917fc5bf67 321 Pfam PF00970 Oxidoreductase FAD-binding domain 9 103 1.8E-5 T 29-03-2018 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 AM354_RS19260 ab27b25744f403ba6af4b5917fc5bf67 321 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 270 278 - T 29-03-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AM354_RS19260 ab27b25744f403ba6af4b5917fc5bf67 321 PRINTS PR00409 Phthalate dioxygenase reductase family signature 31 41 3.3E-28 T 29-03-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 AM354_RS19260 ab27b25744f403ba6af4b5917fc5bf67 321 PRINTS PR00409 Phthalate dioxygenase reductase family signature 193 201 3.3E-28 T 29-03-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 AM354_RS19260 ab27b25744f403ba6af4b5917fc5bf67 321 PRINTS PR00409 Phthalate dioxygenase reductase family signature 80 94 3.3E-28 T 29-03-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 AM354_RS19260 ab27b25744f403ba6af4b5917fc5bf67 321 PRINTS PR00409 Phthalate dioxygenase reductase family signature 116 135 3.3E-28 T 29-03-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 AM354_RS19260 ab27b25744f403ba6af4b5917fc5bf67 321 PRINTS PR00409 Phthalate dioxygenase reductase family signature 141 150 3.3E-28 T 29-03-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 AM354_RS19260 ab27b25744f403ba6af4b5917fc5bf67 321 PRINTS PR00409 Phthalate dioxygenase reductase family signature 94 108 3.3E-28 T 29-03-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 AM354_RS19260 ab27b25744f403ba6af4b5917fc5bf67 321 SUPERFAMILY SSF52343 102 229 7.73E-27 T 29-03-2018 AM354_RS19260 ab27b25744f403ba6af4b5917fc5bf67 321 Gene3D G3DSA:3.10.20.30 229 321 2.5E-17 T 29-03-2018 IPR012675 Beta-grasp domain AM354_RS19260 ab27b25744f403ba6af4b5917fc5bf67 321 Gene3D G3DSA:3.40.50.80 108 228 5.1E-26 T 29-03-2018 AM354_RS19260 ab27b25744f403ba6af4b5917fc5bf67 321 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 241 312 2.1E-12 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM354_RS19260 ab27b25744f403ba6af4b5917fc5bf67 321 Gene3D G3DSA:2.40.30.10 2 104 1.9E-17 T 29-03-2018 AM354_RS19260 ab27b25744f403ba6af4b5917fc5bf67 321 SUPERFAMILY SSF54292 217 320 1.57E-24 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM354_RS19260 ab27b25744f403ba6af4b5917fc5bf67 321 SUPERFAMILY SSF63380 3 104 2.51E-24 T 29-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AM354_RS15915 aeb11b99c44430964a687a60cf0b11ee 67 Pfam PF09526 Probable metal-binding protein (DUF2387) 4 55 2.0E-21 T 29-03-2018 IPR012658 Conserved hypothetical protein CHP02443 AM354_RS15915 aeb11b99c44430964a687a60cf0b11ee 67 TIGRFAM TIGR02443 TIGR02443: conserved hypothetical protein 4 61 4.2E-30 T 29-03-2018 IPR012658 Conserved hypothetical protein CHP02443 AM354_RS15915 aeb11b99c44430964a687a60cf0b11ee 67 Gene3D G3DSA:2.20.25.10 3 51 3.7E-4 T 29-03-2018 AM354_RS15300 3dde80b1d5fa485e647e42f9bd9558ba 247 Gene3D G3DSA:2.60.40.10 146 241 1.1E-19 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS15300 3dde80b1d5fa485e647e42f9bd9558ba 247 PRINTS PR00969 Pili chaperone signature 102 119 1.6E-31 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS15300 3dde80b1d5fa485e647e42f9bd9558ba 247 PRINTS PR00969 Pili chaperone signature 26 35 1.6E-31 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS15300 3dde80b1d5fa485e647e42f9bd9558ba 247 PRINTS PR00969 Pili chaperone signature 72 93 1.6E-31 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS15300 3dde80b1d5fa485e647e42f9bd9558ba 247 PRINTS PR00969 Pili chaperone signature 125 140 1.6E-31 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS15300 3dde80b1d5fa485e647e42f9bd9558ba 247 PRINTS PR00969 Pili chaperone signature 161 176 1.6E-31 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS15300 3dde80b1d5fa485e647e42f9bd9558ba 247 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 101 118 - T 29-03-2018 IPR018046 Pili assembly chaperone, conserved site AM354_RS15300 3dde80b1d5fa485e647e42f9bd9558ba 247 SUPERFAMILY SSF49584 150 241 4.19E-19 T 29-03-2018 IPR016148 Pili assembly chaperone, C-terminal AM354_RS15300 3dde80b1d5fa485e647e42f9bd9558ba 247 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 166 229 3.9E-11 T 29-03-2018 IPR016148 Pili assembly chaperone, C-terminal AM354_RS15300 3dde80b1d5fa485e647e42f9bd9558ba 247 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 26 143 3.2E-36 T 29-03-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 AM354_RS15300 3dde80b1d5fa485e647e42f9bd9558ba 247 Gene3D G3DSA:2.60.40.10 25 144 4.8E-32 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS15300 3dde80b1d5fa485e647e42f9bd9558ba 247 SUPERFAMILY SSF49354 26 143 2.62E-37 T 29-03-2018 IPR008962 PapD-like AM354_RS11635 f2453e1454acffab666df4b6d66a4a5d 461 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 7 459 2.4E-94 T 29-03-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AM354_RS11635 f2453e1454acffab666df4b6d66a4a5d 461 PIRSF PIRSF002746 2 461 1.9E-145 T 29-03-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AM354_RS11635 f2453e1454acffab666df4b6d66a4a5d 461 Pfam PF02447 GntP family permease 7 457 1.8E-136 T 29-03-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AM354_RS25330 06b01ee7c41b107aa6b844bbe415bb63 407 Pfam PF00460 Flagella basal body rod protein 4 33 4.3E-11 T 29-03-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 AM354_RS25330 06b01ee7c41b107aa6b844bbe415bb63 407 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 9 29 - T 29-03-2018 IPR019776 Flagellar basal body rod protein, conserved site AM354_RS25330 06b01ee7c41b107aa6b844bbe415bb63 407 Pfam PF07559 Flagellar basal body protein FlaE 172 288 1.9E-22 T 29-03-2018 IPR011491 Flagellar hook protein FlgE AM354_RS25330 06b01ee7c41b107aa6b844bbe415bb63 407 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 329 406 7.9E-22 T 29-03-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain AM354_RS25330 06b01ee7c41b107aa6b844bbe415bb63 407 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 1 389 1.5E-98 T 29-03-2018 IPR020013 Fagellar hook-basal body protein, FlgE/F/G AM354_RS25330 06b01ee7c41b107aa6b844bbe415bb63 407 Gene3D G3DSA:2.60.98.20 146 289 1.2E-30 T 29-03-2018 IPR011491 Flagellar hook protein FlgE AM354_RS25330 06b01ee7c41b107aa6b844bbe415bb63 407 SUPERFAMILY SSF117143 73 368 1.14E-83 T 29-03-2018 AM354_RS06395 7a1a7365802017a765485039dc252cbc 675 Gene3D G3DSA:3.40.50.620 250 370 9.9E-22 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS06395 7a1a7365802017a765485039dc252cbc 675 Hamap MF_00098 Methionine--tRNA ligase [metG]. 6 545 41.834 T 29-03-2018 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AM354_RS06395 7a1a7365802017a765485039dc252cbc 675 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 9 535 3.9E-202 T 29-03-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AM354_RS06395 7a1a7365802017a765485039dc252cbc 675 SUPERFAMILY SSF57770 142 176 8.11E-13 T 29-03-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AM354_RS06395 7a1a7365802017a765485039dc252cbc 675 SUPERFAMILY SSF52374 176 387 4.1E-105 T 29-03-2018 AM354_RS06395 7a1a7365802017a765485039dc252cbc 675 SUPERFAMILY SSF52374 6 141 4.1E-105 T 29-03-2018 AM354_RS06395 7a1a7365802017a765485039dc252cbc 675 Gene3D G3DSA:3.40.50.620 5 150 2.1E-27 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS06395 7a1a7365802017a765485039dc252cbc 675 Pfam PF01588 Putative tRNA binding domain 579 672 2.5E-21 T 29-03-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 AM354_RS06395 7a1a7365802017a765485039dc252cbc 675 Pfam PF09334 tRNA synthetases class I (M) 9 396 7.8E-165 T 29-03-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS06395 7a1a7365802017a765485039dc252cbc 675 PRINTS PR01041 Methionyl-tRNA synthetase signature 90 101 4.8E-26 T 29-03-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AM354_RS06395 7a1a7365802017a765485039dc252cbc 675 PRINTS PR01041 Methionyl-tRNA synthetase signature 42 56 4.8E-26 T 29-03-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AM354_RS06395 7a1a7365802017a765485039dc252cbc 675 PRINTS PR01041 Methionyl-tRNA synthetase signature 10 23 4.8E-26 T 29-03-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AM354_RS06395 7a1a7365802017a765485039dc252cbc 675 PRINTS PR01041 Methionyl-tRNA synthetase signature 251 262 4.8E-26 T 29-03-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AM354_RS06395 7a1a7365802017a765485039dc252cbc 675 PRINTS PR01041 Methionyl-tRNA synthetase signature 384 395 4.8E-26 T 29-03-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AM354_RS06395 7a1a7365802017a765485039dc252cbc 675 PRINTS PR01041 Methionyl-tRNA synthetase signature 291 306 4.8E-26 T 29-03-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AM354_RS06395 7a1a7365802017a765485039dc252cbc 675 SUPERFAMILY SSF50249 568 674 4.9E-28 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS06395 7a1a7365802017a765485039dc252cbc 675 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 539 675 5.9E-46 T 29-03-2018 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AM354_RS06395 7a1a7365802017a765485039dc252cbc 675 Gene3D G3DSA:1.10.730.10 373 536 1.1E-37 T 29-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS06395 7a1a7365802017a765485039dc252cbc 675 Gene3D G3DSA:2.40.50.140 565 675 5.0E-25 T 29-03-2018 AM354_RS06395 7a1a7365802017a765485039dc252cbc 675 Gene3D G3DSA:2.170.220.10 181 249 5.7E-16 T 29-03-2018 AM354_RS06395 7a1a7365802017a765485039dc252cbc 675 Gene3D G3DSA:2.20.28.20 151 175 9.5E-16 T 29-03-2018 AM354_RS06395 7a1a7365802017a765485039dc252cbc 675 SUPERFAMILY SSF47323 390 547 9.16E-46 T 29-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS06395 7a1a7365802017a765485039dc252cbc 675 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 15 26 - T 29-03-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS18270 b3502c2167c04f58f3ba837072e69184 298 Gene3D G3DSA:3.30.70.100 16 120 5.1E-6 T 29-03-2018 AM354_RS18270 b3502c2167c04f58f3ba837072e69184 298 SUPERFAMILY SSF55008 33 95 1.57E-8 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AM354_RS18270 b3502c2167c04f58f3ba837072e69184 298 Gene3D G3DSA:1.20.1510.10 121 295 5.4E-19 T 29-03-2018 AM354_RS18270 b3502c2167c04f58f3ba837072e69184 298 SUPERFAMILY SSF161111 118 294 3.01E-30 T 29-03-2018 AM354_RS18270 b3502c2167c04f58f3ba837072e69184 298 Pfam PF01545 Cation efflux family 127 294 1.6E-10 T 29-03-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AM354_RS22245 a587d86e4e7cf47f0cd99a760e3d1cd0 151 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 18 144 3.8E-51 T 29-03-2018 IPR003791 Protein of unknown function UPF0178 AM354_RS22245 a587d86e4e7cf47f0cd99a760e3d1cd0 151 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 1 147 33.057 T 29-03-2018 IPR003791 Protein of unknown function UPF0178 AM354_RS05740 781ac9152f5ec68a6c66cb350afb9648 1222 Gene3D G3DSA:1.10.10.10 1157 1211 5.2E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS05740 781ac9152f5ec68a6c66cb350afb9648 1222 SUPERFAMILY SSF52540 813 1125 1.27E-52 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS05740 781ac9152f5ec68a6c66cb350afb9648 1222 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 20 191 2.3E-43 T 29-03-2018 IPR025199 DNA translocase FtsK, 4TM region AM354_RS05740 781ac9152f5ec68a6c66cb350afb9648 1222 Pfam PF09397 Ftsk gamma domain 1157 1217 4.5E-28 T 29-03-2018 IPR018541 FtsK gamma domain AM354_RS05740 781ac9152f5ec68a6c66cb350afb9648 1222 Pfam PF01580 FtsK/SpoIIIE family 839 1052 5.1E-72 T 29-03-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 AM354_RS05740 781ac9152f5ec68a6c66cb350afb9648 1222 SUPERFAMILY SSF46785 1155 1219 3.99E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS05740 781ac9152f5ec68a6c66cb350afb9648 1222 SMART SM00843 1155 1220 4.8E-41 T 29-03-2018 IPR018541 FtsK gamma domain AM354_RS05740 781ac9152f5ec68a6c66cb350afb9648 1222 Gene3D G3DSA:3.40.50.300 541 1090 1.1E-55 T 29-03-2018 AM354_RS24250 549f3ae61fe766762156daef7b43958a 209 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 168 196 4.1E-5 T 29-03-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 AM354_RS24250 549f3ae61fe766762156daef7b43958a 209 SUPERFAMILY SSF55186 85 201 4.84E-22 T 29-03-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 AM354_RS24250 549f3ae61fe766762156daef7b43958a 209 SUPERFAMILY SSF50447 3 77 1.77E-13 T 29-03-2018 IPR009000 Translation protein, beta-barrel domain AM354_RS24250 549f3ae61fe766762156daef7b43958a 209 Gene3D G3DSA:3.30.980.10 85 209 2.6E-11 T 29-03-2018 AM354_RS00295 486ee01e7f79afb89f90f19c9d8251ac 291 Pfam PF01263 Aldose 1-epimerase 29 276 1.1E-42 T 29-03-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 AM354_RS00295 486ee01e7f79afb89f90f19c9d8251ac 291 SUPERFAMILY SSF74650 8 276 7.53E-71 T 29-03-2018 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 AM354_RS00295 486ee01e7f79afb89f90f19c9d8251ac 291 Gene3D G3DSA:2.70.98.10 1 290 4.4E-62 T 29-03-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 AM354_RS00295 486ee01e7f79afb89f90f19c9d8251ac 291 PIRSF PIRSF016020 7 288 6.1E-57 T 29-03-2018 IPR025532 Glucose-6-phosphate 1-epimerase KEGG: 00010+5.1.3.15 AM354_RS23255 ba32f85d9006691d59bd345ab02f32e4 478 SMART SM01060 7 391 1.6E-280 T 29-03-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 AM354_RS23255 ba32f85d9006691d59bd345ab02f32e4 478 SUPERFAMILY SSF56634 4 477 4.19E-210 T 29-03-2018 IPR020835 Catalase-like domain GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 AM354_RS23255 ba32f85d9006691d59bd345ab02f32e4 478 Pfam PF06628 Catalase-related immune-responsive 414 475 6.0E-22 T 29-03-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 AM354_RS23255 ba32f85d9006691d59bd345ab02f32e4 478 PRINTS PR00067 Catalase signature 123 141 4.9E-71 T 29-03-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 AM354_RS23255 ba32f85d9006691d59bd345ab02f32e4 478 PRINTS PR00067 Catalase signature 320 346 4.9E-71 T 29-03-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 AM354_RS23255 ba32f85d9006691d59bd345ab02f32e4 478 PRINTS PR00067 Catalase signature 288 315 4.9E-71 T 29-03-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 AM354_RS23255 ba32f85d9006691d59bd345ab02f32e4 478 PRINTS PR00067 Catalase signature 20 43 4.9E-71 T 29-03-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 AM354_RS23255 ba32f85d9006691d59bd345ab02f32e4 478 PRINTS PR00067 Catalase signature 83 101 4.9E-71 T 29-03-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 AM354_RS23255 ba32f85d9006691d59bd345ab02f32e4 478 PRINTS PR00067 Catalase signature 104 121 4.9E-71 T 29-03-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 AM354_RS23255 ba32f85d9006691d59bd345ab02f32e4 478 ProSitePatterns PS00438 Catalase proximal active site signature. 43 59 - T 29-03-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 AM354_RS23255 ba32f85d9006691d59bd345ab02f32e4 478 PIRSF PIRSF038928 1 478 2.9E-219 T 29-03-2018 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 AM354_RS23255 ba32f85d9006691d59bd345ab02f32e4 478 Gene3D G3DSA:2.40.180.10 1 357 2.8E-157 T 29-03-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 AM354_RS23255 ba32f85d9006691d59bd345ab02f32e4 478 Pfam PF00199 Catalase 7 387 1.0E-186 T 29-03-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 AM354_RS23255 ba32f85d9006691d59bd345ab02f32e4 478 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 333 341 - T 29-03-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 AM354_RS06820 b103f5f43f359352dff5fc27e1517ca5 88 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 36 68 7.4E-13 T 29-03-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 AM354_RS06820 b103f5f43f359352dff5fc27e1517ca5 88 SUPERFAMILY SSF57716 38 71 1.5E-6 T 29-03-2018 AM354_RS06820 b103f5f43f359352dff5fc27e1517ca5 88 Gene3D G3DSA:3.30.60.20 38 63 4.4E-4 T 29-03-2018 AM354_RS00770 8a4d0a1344fff9dc70d2a9ac9ed9e90e 98 Pfam PF03795 YCII-related domain 1 95 6.4E-30 T 29-03-2018 IPR005545 YCII-related AM354_RS00770 8a4d0a1344fff9dc70d2a9ac9ed9e90e 98 Gene3D G3DSA:3.30.70.1060 1 98 6.5E-29 T 29-03-2018 AM354_RS00770 8a4d0a1344fff9dc70d2a9ac9ed9e90e 98 SUPERFAMILY SSF54909 1 98 3.22E-32 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel AM354_RS20680 673ba99af73a9b8755c2a012da826f98 114 Pfam PF11742 Protein of unknown function (DUF3302) 3 78 1.1E-38 T 29-03-2018 IPR011223 Uncharacterised conserved protein UCP028770 AM354_RS20680 673ba99af73a9b8755c2a012da826f98 114 PIRSF PIRSF028770 1 108 1.9E-55 T 29-03-2018 IPR011223 Uncharacterised conserved protein UCP028770 AM354_RS08325 a9a28af94488dc029b06838308bf40b2 234 Pfam PF02525 Flavodoxin-like fold 3 194 5.3E-43 T 29-03-2018 IPR003680 Flavodoxin-like fold AM354_RS08325 a9a28af94488dc029b06838308bf40b2 234 Gene3D G3DSA:3.40.50.360 3 202 3.4E-35 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS08325 a9a28af94488dc029b06838308bf40b2 234 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 199 31.713 T 29-03-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 AM354_RS08325 a9a28af94488dc029b06838308bf40b2 234 SUPERFAMILY SSF52218 1 199 4.02E-53 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS12470 a699b095cbe4618d9e24646900b83238 162 Pfam PF04186 FxsA cytoplasmic membrane protein 8 109 2.0E-32 T 29-03-2018 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 AM354_RS17000 eff1a74f7d0a284112fa528736a34518 142 SUPERFAMILY SSF52161 1 140 1.57E-60 T 29-03-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 AM354_RS17000 eff1a74f7d0a284112fa528736a34518 142 ProSitePatterns PS00783 Ribosomal protein L13 signature. 105 127 - T 29-03-2018 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 AM354_RS17000 eff1a74f7d0a284112fa528736a34518 142 Gene3D G3DSA:3.90.1180.10 1 142 1.8E-62 T 29-03-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 AM354_RS17000 eff1a74f7d0a284112fa528736a34518 142 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 141 28.522 T 29-03-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 AM354_RS17000 eff1a74f7d0a284112fa528736a34518 142 PIRSF PIRSF002181 1 142 7.4E-51 T 29-03-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 AM354_RS17000 eff1a74f7d0a284112fa528736a34518 142 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 4 142 1.2E-67 T 29-03-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS17000 eff1a74f7d0a284112fa528736a34518 142 Pfam PF00572 Ribosomal protein L13 15 138 9.3E-57 T 29-03-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 AM354_RS07640 15ae4f8d179e7e1f318d7f77a070fdd2 310 SUPERFAMILY SSF51395 1 301 1.52E-70 T 29-03-2018 AM354_RS07640 15ae4f8d179e7e1f318d7f77a070fdd2 310 PIRSF PIRSF006621 1 309 1.3E-80 T 29-03-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AM354_RS07640 15ae4f8d179e7e1f318d7f77a070fdd2 310 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 92 110 - T 29-03-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 AM354_RS07640 15ae4f8d179e7e1f318d7f77a070fdd2 310 Pfam PF01207 Dihydrouridine synthase (Dus) 5 294 5.7E-89 T 29-03-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AM354_RS07640 15ae4f8d179e7e1f318d7f77a070fdd2 310 Gene3D G3DSA:3.20.20.70 1 242 2.4E-46 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS07640 15ae4f8d179e7e1f318d7f77a070fdd2 310 Hamap MF_02043 tRNA-dihydrouridine(16) synthase [dusC]. 8 310 51.807 T 29-03-2018 IPR032886 tRNA-dihydrouridine(16) synthase GO:0002943|GO:0017150 AM354_RS00230 8b2e97240d892eb7e895e1350895a8d1 357 Hamap MF_01201 Alanine racemase. 2 356 32.161 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM354_RS00230 8b2e97240d892eb7e895e1350895a8d1 357 TIGRFAM TIGR00492 alr: alanine racemase 4 353 1.9E-115 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM354_RS00230 8b2e97240d892eb7e895e1350895a8d1 357 Pfam PF00842 Alanine racemase, C-terminal domain 232 352 3.0E-38 T 29-03-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM354_RS00230 8b2e97240d892eb7e895e1350895a8d1 357 Gene3D G3DSA:2.40.37.10 202 356 6.1E-56 T 29-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AM354_RS00230 8b2e97240d892eb7e895e1350895a8d1 357 Pfam PF01168 Alanine racemase, N-terminal domain 10 217 4.4E-67 T 29-03-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM354_RS00230 8b2e97240d892eb7e895e1350895a8d1 357 Gene3D G3DSA:3.20.20.10 12 201 3.2E-38 T 29-03-2018 IPR029066 PLP-binding barrel AM354_RS00230 8b2e97240d892eb7e895e1350895a8d1 357 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 32 42 - T 29-03-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM354_RS00230 8b2e97240d892eb7e895e1350895a8d1 357 SUPERFAMILY SSF50621 227 353 7.32E-42 T 29-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AM354_RS00230 8b2e97240d892eb7e895e1350895a8d1 357 SMART SM01005 232 356 2.6E-60 T 29-03-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM354_RS00230 8b2e97240d892eb7e895e1350895a8d1 357 SUPERFAMILY SSF51419 10 233 4.45E-63 T 29-03-2018 IPR029066 PLP-binding barrel AM354_RS00230 8b2e97240d892eb7e895e1350895a8d1 357 PRINTS PR00992 Alanine racemase signature 248 263 9.7E-69 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM354_RS00230 8b2e97240d892eb7e895e1350895a8d1 357 PRINTS PR00992 Alanine racemase signature 286 303 9.7E-69 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM354_RS00230 8b2e97240d892eb7e895e1350895a8d1 357 PRINTS PR00992 Alanine racemase signature 61 79 9.7E-69 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM354_RS00230 8b2e97240d892eb7e895e1350895a8d1 357 PRINTS PR00992 Alanine racemase signature 338 351 9.7E-69 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM354_RS00230 8b2e97240d892eb7e895e1350895a8d1 357 PRINTS PR00992 Alanine racemase signature 155 166 9.7E-69 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM354_RS00230 8b2e97240d892eb7e895e1350895a8d1 357 PRINTS PR00992 Alanine racemase signature 27 43 9.7E-69 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM354_RS00230 8b2e97240d892eb7e895e1350895a8d1 357 PRINTS PR00992 Alanine racemase signature 190 217 9.7E-69 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM354_RS00230 8b2e97240d892eb7e895e1350895a8d1 357 PRINTS PR00992 Alanine racemase signature 265 280 9.7E-69 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM354_RS00230 8b2e97240d892eb7e895e1350895a8d1 357 PRINTS PR00992 Alanine racemase signature 121 133 9.7E-69 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM354_RS15545 c6b537da3cab6e11b51ba4dae68c7cab 308 SUPERFAMILY SSF51658 16 281 7.59E-55 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM354_RS15545 c6b537da3cab6e11b51ba4dae68c7cab 308 TIGRFAM TIGR00542 hxl6Piso_put: putative hexulose-6-phosphate isomerase 5 286 1.8E-131 T 29-03-2018 IPR004560 L-ribulose-5-phosphate 3-epimerase GO:0005975|GO:0016861 KEGG: 00053+5.1.3.22|MetaCyc: PWY-6961 AM354_RS15545 c6b537da3cab6e11b51ba4dae68c7cab 308 Gene3D G3DSA:3.20.20.150 1 288 2.2E-55 T 29-03-2018 AM354_RS15545 c6b537da3cab6e11b51ba4dae68c7cab 308 Pfam PF01261 Xylose isomerase-like TIM barrel 26 230 6.5E-31 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM354_RS07770 05e73b7d9f72520045907b2a6d03c350 272 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 6 94 6.9E-12 T 29-03-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 AM354_RS07770 05e73b7d9f72520045907b2a6d03c350 272 Gene3D G3DSA:3.40.50.1000 1 272 4.8E-44 T 29-03-2018 IPR023214 HAD-like domain AM354_RS07770 05e73b7d9f72520045907b2a6d03c350 272 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 244 256 1.9E-5 T 29-03-2018 AM354_RS07770 05e73b7d9f72520045907b2a6d03c350 272 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 221 240 1.9E-5 T 29-03-2018 AM354_RS07770 05e73b7d9f72520045907b2a6d03c350 272 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 7 21 1.9E-5 T 29-03-2018 AM354_RS07770 05e73b7d9f72520045907b2a6d03c350 272 SUPERFAMILY SSF56784 1 271 5.72E-67 T 29-03-2018 IPR023214 HAD-like domain AM354_RS07770 05e73b7d9f72520045907b2a6d03c350 272 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 267 4.6E-63 T 29-03-2018 IPR023214 HAD-like domain AM354_RS07770 05e73b7d9f72520045907b2a6d03c350 272 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 267 1.5E-69 T 29-03-2018 IPR000150 Cof family GO:0016787 AM354_RS07770 05e73b7d9f72520045907b2a6d03c350 272 ProSitePatterns PS01229 Hypothetical cof family signature 2. 221 243 - T 29-03-2018 AM354_RS22215 31a4e9cd69c421944642a01ee3d331d7 312 Gene3D G3DSA:3.20.20.330 2 312 1.2E-101 T 29-03-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 AM354_RS22215 31a4e9cd69c421944642a01ee3d331d7 312 SUPERFAMILY SSF82282 13 311 1.96E-85 T 29-03-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 AM354_RS22215 31a4e9cd69c421944642a01ee3d331d7 312 Pfam PF02574 Homocysteine S-methyltransferase 17 309 1.4E-80 T 29-03-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 AM354_RS22215 31a4e9cd69c421944642a01ee3d331d7 312 PIRSF PIRSF037505 272 311 0.046 T 29-03-2018 IPR017226 Betaine-homocysteine S-methyltransferase, BHMT GO:0005737|GO:0008270|GO:0009086|GO:0047150 Reactome: R-HSA-1614635 AM354_RS22215 31a4e9cd69c421944642a01ee3d331d7 312 PIRSF PIRSF037505 7 185 9.3E-4 T 29-03-2018 IPR017226 Betaine-homocysteine S-methyltransferase, BHMT GO:0005737|GO:0008270|GO:0009086|GO:0047150 Reactome: R-HSA-1614635 AM354_RS19650 5d57e0acf23918453821ce01e4515f8a 505 Pfam PF00152 tRNA synthetases class II (D, K and N) 162 501 1.5E-85 T 29-03-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS19650 5d57e0acf23918453821ce01e4515f8a 505 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 14 505 6.3E-233 T 29-03-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AM354_RS19650 5d57e0acf23918453821ce01e4515f8a 505 Pfam PF01336 OB-fold nucleic acid binding domain 68 146 1.9E-15 T 29-03-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 AM354_RS19650 5d57e0acf23918453821ce01e4515f8a 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 199 209 1.6E-39 T 29-03-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AM354_RS19650 5d57e0acf23918453821ce01e4515f8a 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 262 279 1.6E-39 T 29-03-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AM354_RS19650 5d57e0acf23918453821ce01e4515f8a 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 215 231 1.6E-39 T 29-03-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AM354_RS19650 5d57e0acf23918453821ce01e4515f8a 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 244 257 1.6E-39 T 29-03-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AM354_RS19650 5d57e0acf23918453821ce01e4515f8a 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 386 402 1.6E-39 T 29-03-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AM354_RS19650 5d57e0acf23918453821ce01e4515f8a 505 PIRSF PIRSF039101 1 505 4.4E-204 T 29-03-2018 IPR034762 Bacterial/eukaryotic lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AM354_RS19650 5d57e0acf23918453821ce01e4515f8a 505 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 21 505 45.351 T 29-03-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AM354_RS19650 5d57e0acf23918453821ce01e4515f8a 505 Gene3D G3DSA:3.30.930.10 156 501 7.5E-106 T 29-03-2018 AM354_RS19650 5d57e0acf23918453821ce01e4515f8a 505 SUPERFAMILY SSF55681 162 502 1.99E-124 T 29-03-2018 AM354_RS19650 5d57e0acf23918453821ce01e4515f8a 505 SUPERFAMILY SSF50249 13 155 6.61E-47 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS19650 5d57e0acf23918453821ce01e4515f8a 505 Gene3D G3DSA:2.40.50.140 15 154 1.4E-40 T 29-03-2018 AM354_RS23310 467adb77ca228ae83226ffd273a445a9 880 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 743 789 3.0E-13 T 29-03-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AM354_RS23310 467adb77ca228ae83226ffd273a445a9 880 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 793 839 1.4E-12 T 29-03-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AM354_RS23310 467adb77ca228ae83226ffd273a445a9 880 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 693 737 5.9E-16 T 29-03-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AM354_RS23310 467adb77ca228ae83226ffd273a445a9 880 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 645 688 1.4E-8 T 29-03-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AM354_RS23310 467adb77ca228ae83226ffd273a445a9 880 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 538 584 2.4E-10 T 29-03-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AM354_RS23310 467adb77ca228ae83226ffd273a445a9 880 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 588 637 3.5E-11 T 29-03-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AM354_RS23310 467adb77ca228ae83226ffd273a445a9 880 SMART SM00434 11 499 9.4E-301 T 29-03-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM354_RS23310 467adb77ca228ae83226ffd273a445a9 880 SUPERFAMILY SSF56719 30 521 9.29E-183 T 29-03-2018 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AM354_RS23310 467adb77ca228ae83226ffd273a445a9 880 Gene3D G3DSA:3.90.199.10 34 285 2.5E-116 T 29-03-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 AM354_RS23310 467adb77ca228ae83226ffd273a445a9 880 Gene3D G3DSA:2.120.10.90 533 855 1.6E-137 T 29-03-2018 AM354_RS23310 467adb77ca228ae83226ffd273a445a9 880 SUPERFAMILY SSF101904 533 850 3.01E-114 T 29-03-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal AM354_RS23310 467adb77ca228ae83226ffd273a445a9 880 Gene3D G3DSA:3.90.199.10 286 375 4.1E-9 T 29-03-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 AM354_RS23310 467adb77ca228ae83226ffd273a445a9 880 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 8 840 0.0 T 29-03-2018 AM354_RS23310 467adb77ca228ae83226ffd273a445a9 880 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 32 506 8.0E-153 T 29-03-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM354_RS23310 467adb77ca228ae83226ffd273a445a9 880 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 1 841 24.671 T 29-03-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM354_RS23310 467adb77ca228ae83226ffd273a445a9 880 Gene3D G3DSA:1.10.268.10 376 497 1.3E-48 T 29-03-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM354_RS26070 e7ae105e1426fc27f216debc816e6c41 215 SUPERFAMILY SSF46785 90 172 4.89E-30 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS26070 e7ae105e1426fc27f216debc816e6c41 215 Gene3D G3DSA:1.10.10.10 97 171 4.3E-34 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS26070 e7ae105e1426fc27f216debc816e6c41 215 Hamap MF_01584 UPF0502 protein YceH [yceH]. 5 210 35.034 T 29-03-2018 IPR007432 Protein of unknown function DUF480 AM354_RS26070 e7ae105e1426fc27f216debc816e6c41 215 Pfam PF04337 Protein of unknown function, DUF480 5 158 4.2E-64 T 29-03-2018 IPR007432 Protein of unknown function DUF480 AM354_RS26070 e7ae105e1426fc27f216debc816e6c41 215 SUPERFAMILY SSF46785 2 84 4.91E-32 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS26070 e7ae105e1426fc27f216debc816e6c41 215 Gene3D G3DSA:1.10.10.10 2 87 3.5E-36 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS04450 4771f7b9aef7be366c72bf9dc93ebded 109 Gene3D G3DSA:3.30.530.20 1 47 7.1E-8 T 29-03-2018 IPR023393 START-like domain AM354_RS04450 4771f7b9aef7be366c72bf9dc93ebded 109 SUPERFAMILY SSF55961 8 97 1.95E-15 T 29-03-2018 AM354_RS04450 4771f7b9aef7be366c72bf9dc93ebded 109 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 20 82 1.4E-5 T 29-03-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 AM354_RS04450 4771f7b9aef7be366c72bf9dc93ebded 109 Gene3D G3DSA:3.30.530.20 48 109 4.6E-5 T 29-03-2018 IPR023393 START-like domain AM354_RS17060 11fa9843041c6bcc0efd2b6e00bb2457 217 SUPERFAMILY SSF52317 1 216 3.44E-62 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS17060 11fa9843041c6bcc0efd2b6e00bb2457 217 Pfam PF01965 DJ-1/PfpI family 14 142 4.1E-6 T 29-03-2018 IPR002818 DJ-1/PfpI AM354_RS17060 11fa9843041c6bcc0efd2b6e00bb2457 217 PIRSF PIRSF006320 1 216 6.6E-100 T 29-03-2018 IPR026041 Glyoxalase ElbB AM354_RS17060 11fa9843041c6bcc0efd2b6e00bb2457 217 Gene3D G3DSA:3.40.50.880 2 217 4.8E-41 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS15235 865304fb9677d15e9fbd17860678fb7c 497 Pfam PF00392 Bacterial regulatory proteins, gntR family 24 86 9.5E-15 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS15235 865304fb9677d15e9fbd17860678fb7c 497 SMART SM00345 27 86 7.7E-17 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS15235 865304fb9677d15e9fbd17860678fb7c 497 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 60 76 2.4E-5 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS15235 865304fb9677d15e9fbd17860678fb7c 497 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 60 2.4E-5 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS15235 865304fb9677d15e9fbd17860678fb7c 497 Gene3D G3DSA:3.40.640.10 152 393 3.8E-40 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS15235 865304fb9677d15e9fbd17860678fb7c 497 SUPERFAMILY SSF53383 117 489 5.46E-85 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS15235 865304fb9677d15e9fbd17860678fb7c 497 Pfam PF00155 Aminotransferase class I and II 164 461 2.1E-18 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM354_RS15235 865304fb9677d15e9fbd17860678fb7c 497 Gene3D G3DSA:3.90.1150.10 394 492 5.8E-21 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS15235 865304fb9677d15e9fbd17860678fb7c 497 SUPERFAMILY SSF46785 22 90 1.77E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS15235 865304fb9677d15e9fbd17860678fb7c 497 Gene3D G3DSA:1.10.10.10 15 88 1.6E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS10100 e7f3c858d48d05adcdc39db7e32a8b4a 453 SMART SM00963 1 86 2.2E-36 T 29-03-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AM354_RS10100 e7f3c858d48d05adcdc39db7e32a8b4a 453 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 429 9.9E-179 T 29-03-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 AM354_RS10100 e7f3c858d48d05adcdc39db7e32a8b4a 453 SMART SM00382 99 247 1.1E-8 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS10100 e7f3c858d48d05adcdc39db7e32a8b4a 453 SUPERFAMILY SSF47446 298 431 4.32E-46 T 29-03-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 AM354_RS10100 e7f3c858d48d05adcdc39db7e32a8b4a 453 Gene3D G3DSA:1.20.120.140 1 91 3.9E-29 T 29-03-2018 AM354_RS10100 e7f3c858d48d05adcdc39db7e32a8b4a 453 SUPERFAMILY SSF52540 42 353 1.15E-56 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS10100 e7f3c858d48d05adcdc39db7e32a8b4a 453 SMART SM00962 100 296 1.9E-116 T 29-03-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AM354_RS10100 e7f3c858d48d05adcdc39db7e32a8b4a 453 Gene3D G3DSA:3.40.50.300 92 297 3.6E-39 T 29-03-2018 AM354_RS10100 e7f3c858d48d05adcdc39db7e32a8b4a 453 Gene3D G3DSA:1.10.260.30 328 432 1.2E-37 T 29-03-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 AM354_RS10100 e7f3c858d48d05adcdc39db7e32a8b4a 453 Pfam PF02978 Signal peptide binding domain 329 427 3.7E-32 T 29-03-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 AM354_RS10100 e7f3c858d48d05adcdc39db7e32a8b4a 453 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 439 34.875 T 29-03-2018 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 AM354_RS10100 e7f3c858d48d05adcdc39db7e32a8b4a 453 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 3.0E-22 T 29-03-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AM354_RS10100 e7f3c858d48d05adcdc39db7e32a8b4a 453 Pfam PF00448 SRP54-type protein, GTPase domain 100 296 8.3E-75 T 29-03-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AM354_RS10100 e7f3c858d48d05adcdc39db7e32a8b4a 453 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 269 282 - T 29-03-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AM354_RS22965 8c332d792b9e10fa8fb5ae753faf5db0 302 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 1 281 38.337 T 29-03-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 AM354_RS22965 8c332d792b9e10fa8fb5ae753faf5db0 302 SUPERFAMILY SSF52096 25 283 1.8E-88 T 29-03-2018 IPR029045 ClpP/crotonase-like domain AM354_RS22965 8c332d792b9e10fa8fb5ae753faf5db0 302 Gene3D G3DSA:3.90.226.10 12 288 2.7E-70 T 29-03-2018 AM354_RS22965 8c332d792b9e10fa8fb5ae753faf5db0 302 Pfam PF01039 Carboxyl transferase domain 102 298 3.4E-17 T 29-03-2018 IPR034733 Acetyl-CoA carboxylase KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388|Reactome: R-HSA-196780 AM354_RS22965 8c332d792b9e10fa8fb5ae753faf5db0 302 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 251 260 2.7E-36 T 29-03-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 AM354_RS22965 8c332d792b9e10fa8fb5ae753faf5db0 302 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 200 217 2.7E-36 T 29-03-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 AM354_RS22965 8c332d792b9e10fa8fb5ae753faf5db0 302 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 129 143 2.7E-36 T 29-03-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 AM354_RS22965 8c332d792b9e10fa8fb5ae753faf5db0 302 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 229 240 2.7E-36 T 29-03-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 AM354_RS22965 8c332d792b9e10fa8fb5ae753faf5db0 302 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 163 181 2.7E-36 T 29-03-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 AM354_RS22965 8c332d792b9e10fa8fb5ae753faf5db0 302 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 1 284 1.2E-148 T 29-03-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 AM354_RS03025 bd14cb4a83e97da0fb08e997cfe152c0 154 Pfam PF05433 Glycine zipper 2TM domain 62 102 2.0E-7 T 29-03-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 AM354_RS21345 b3b45ce13b4e6a393d48dfb48ba3970e 436 Gene3D G3DSA:1.20.1250.20 3 222 3.4E-41 T 29-03-2018 AM354_RS21345 b3b45ce13b4e6a393d48dfb48ba3970e 436 PIRSF PIRSF002808 3 435 2.0E-33 T 29-03-2018 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 AM354_RS21345 b3b45ce13b4e6a393d48dfb48ba3970e 436 Pfam PF07690 Major Facilitator Superfamily 29 389 1.1E-53 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS21345 b3b45ce13b4e6a393d48dfb48ba3970e 436 Gene3D G3DSA:1.20.1250.20 229 436 1.2E-21 T 29-03-2018 AM354_RS21345 b3b45ce13b4e6a393d48dfb48ba3970e 436 SUPERFAMILY SSF103473 14 427 1.83E-79 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS12665 7fd934779f8e4fa7ca37443eb997293e 354 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 6 349 50.565 T 29-03-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AM354_RS12665 7fd934779f8e4fa7ca37443eb997293e 354 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 22 31 - T 29-03-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AM354_RS12665 7fd934779f8e4fa7ca37443eb997293e 354 Gene3D G3DSA:3.20.20.210 1 354 9.6E-111 T 29-03-2018 AM354_RS12665 7fd934779f8e4fa7ca37443eb997293e 354 SUPERFAMILY SSF51726 1 352 1.13E-122 T 29-03-2018 AM354_RS12665 7fd934779f8e4fa7ca37443eb997293e 354 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 142 158 - T 29-03-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AM354_RS12665 7fd934779f8e4fa7ca37443eb997293e 354 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 5 347 8.6E-142 T 29-03-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AM354_RS12665 7fd934779f8e4fa7ca37443eb997293e 354 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 9 346 3.6E-136 T 29-03-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AM354_RS23850 1e3d55b1851a8b471f6e0cd9da60273d 438 Pfam PF00144 Beta-lactamase 117 415 1.5E-41 T 29-03-2018 IPR001466 Beta-lactamase-related AM354_RS23850 1e3d55b1851a8b471f6e0cd9da60273d 438 Gene3D G3DSA:3.40.710.10 103 425 1.7E-52 T 29-03-2018 AM354_RS23850 1e3d55b1851a8b471f6e0cd9da60273d 438 SUPERFAMILY SSF56601 56 414 2.62E-79 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM354_RS07775 2efa1be67e5c0e7db61efbb400bad6a0 355 SMART SM00382 23 206 1.1E-10 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS07775 2efa1be67e5c0e7db61efbb400bad6a0 355 SUPERFAMILY SSF52540 9 224 4.35E-57 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS07775 2efa1be67e5c0e7db61efbb400bad6a0 355 Gene3D G3DSA:3.40.50.300 10 252 2.5E-51 T 29-03-2018 AM354_RS07775 2efa1be67e5c0e7db61efbb400bad6a0 355 Pfam PF03459 TOBE domain 290 350 8.5E-17 T 29-03-2018 IPR005116 Transport-associated OB, type 1 AM354_RS07775 2efa1be67e5c0e7db61efbb400bad6a0 355 TIGRFAM TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein 2 350 4.0E-152 T 29-03-2018 IPR011868 Molybdate ABC transporter, ATP-binding protein GO:0005524|GO:0015098|GO:0015689|GO:0016020 AM354_RS07775 2efa1be67e5c0e7db61efbb400bad6a0 355 SUPERFAMILY SSF50331 235 350 2.55E-22 T 29-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal AM354_RS07775 2efa1be67e5c0e7db61efbb400bad6a0 355 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 289 350 4.1E-18 T 29-03-2018 IPR004606 Molybdenum-pterin binding GO:0006810|GO:0030151 AM354_RS07775 2efa1be67e5c0e7db61efbb400bad6a0 355 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS07775 2efa1be67e5c0e7db61efbb400bad6a0 355 Gene3D G3DSA:2.40.50.100 272 349 3.2E-21 T 29-03-2018 AM354_RS07775 2efa1be67e5c0e7db61efbb400bad6a0 355 Pfam PF00005 ABC transporter 16 156 2.7E-28 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS08545 213f8ed5c0d2affbd86c255a747f39eb 164 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 1 161 6.0E-47 T 29-03-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 AM354_RS08545 213f8ed5c0d2affbd86c255a747f39eb 164 Gene3D G3DSA:2.40.100.10 1 164 2.2E-51 T 29-03-2018 IPR029000 Cyclophilin-like domain AM354_RS08545 213f8ed5c0d2affbd86c255a747f39eb 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 41 53 5.9E-12 T 29-03-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 AM354_RS08545 213f8ed5c0d2affbd86c255a747f39eb 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 15 30 5.9E-12 T 29-03-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 AM354_RS08545 213f8ed5c0d2affbd86c255a747f39eb 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 133 5.9E-12 T 29-03-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 AM354_RS08545 213f8ed5c0d2affbd86c255a747f39eb 164 PIRSF PIRSF001467 1 164 3.4E-28 T 29-03-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 AM354_RS08545 213f8ed5c0d2affbd86c255a747f39eb 164 SUPERFAMILY SSF50891 1 162 1.34E-59 T 29-03-2018 IPR029000 Cyclophilin-like domain AM354_RS08545 213f8ed5c0d2affbd86c255a747f39eb 164 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 36 53 - T 29-03-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 AM354_RS00480 1b4afc22666e82334d0bb574852b82a0 107 SUPERFAMILY SSF102816 1 107 3.66E-51 T 29-03-2018 IPR007376 dsDNA mimic, putative AM354_RS00480 1b4afc22666e82334d0bb574852b82a0 107 Gene3D G3DSA:3.10.450.140 8 106 2.4E-44 T 29-03-2018 IPR007376 dsDNA mimic, putative AM354_RS00480 1b4afc22666e82334d0bb574852b82a0 107 Pfam PF04269 Protein of unknown function, DUF440 6 107 1.4E-45 T 29-03-2018 IPR007376 dsDNA mimic, putative AM354_RS00480 1b4afc22666e82334d0bb574852b82a0 107 ProDom PD020447 UPF0263 YCIU HD0986 VV1228 UNCHARACTERIZED 3D-STRUCTURE VV13059 BCR PM0536 VC1208 5 107 3.0E-51 T 29-03-2018 IPR007376 dsDNA mimic, putative AM354_RS00480 1b4afc22666e82334d0bb574852b82a0 107 Hamap MF_00680 UPF0263 protein YciU [yciU]. 3 107 34.031 T 29-03-2018 IPR007376 dsDNA mimic, putative AM354_RS00480 1b4afc22666e82334d0bb574852b82a0 107 PIRSF PIRSF004916 1 107 1.9E-55 T 29-03-2018 IPR007376 dsDNA mimic, putative AM354_RS04210 768aeda7f6d9f6c22178cfc2272e0837 339 SUPERFAMILY SSF101478 7 320 4.05E-69 T 29-03-2018 IPR005502 ADP-ribosylation/Crystallin J1 AM354_RS04210 768aeda7f6d9f6c22178cfc2272e0837 339 Gene3D G3DSA:1.10.4080.10 4 334 2.5E-68 T 29-03-2018 IPR005502 ADP-ribosylation/Crystallin J1 AM354_RS04210 768aeda7f6d9f6c22178cfc2272e0837 339 Pfam PF03747 ADP-ribosylglycohydrolase 12 305 1.0E-60 T 29-03-2018 IPR005502 ADP-ribosylation/Crystallin J1 AM354_RS17055 1cade22c005a01698a1ac442d0784e59 779 SMART SM00388 282 347 3.0E-18 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS17055 1cade22c005a01698a1ac442d0784e59 779 Pfam PF00512 His Kinase A (phospho-acceptor) domain 283 345 3.4E-14 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS17055 1cade22c005a01698a1ac442d0784e59 779 SUPERFAMILY SSF55785 142 267 1.74E-20 T 29-03-2018 IPR000014 PAS domain AM354_RS17055 1cade22c005a01698a1ac442d0784e59 779 Gene3D G3DSA:1.10.287.130 279 341 1.2E-16 T 29-03-2018 AM354_RS17055 1cade22c005a01698a1ac442d0784e59 779 Gene3D G3DSA:3.30.450.20 153 278 6.7E-23 T 29-03-2018 AM354_RS17055 1cade22c005a01698a1ac442d0784e59 779 Gene3D G3DSA:1.20.120.160 659 779 4.5E-20 T 29-03-2018 AM354_RS17055 1cade22c005a01698a1ac442d0784e59 779 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 153 276 5.1E-14 T 29-03-2018 IPR000014 PAS domain AM354_RS17055 1cade22c005a01698a1ac442d0784e59 779 SUPERFAMILY SSF47226 662 775 1.44E-31 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM354_RS17055 1cade22c005a01698a1ac442d0784e59 779 Pfam PF00072 Response regulator receiver domain 528 639 6.3E-22 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS17055 1cade22c005a01698a1ac442d0784e59 779 Gene3D G3DSA:1.10.287.970 3 80 6.3E-38 T 29-03-2018 IPR027460 Aerobic respiration control sensor protein ArcB, transmembrane domain AM354_RS17055 1cade22c005a01698a1ac442d0784e59 779 SUPERFAMILY SSF47384 269 347 3.92E-17 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS17055 1cade22c005a01698a1ac442d0784e59 779 Gene3D G3DSA:1.20.58.70 81 152 8.1E-4 T 29-03-2018 AM354_RS17055 1cade22c005a01698a1ac442d0784e59 779 Pfam PF01627 Hpt domain 687 761 6.3E-13 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM354_RS17055 1cade22c005a01698a1ac442d0784e59 779 SMART SM00091 155 221 4.6E-7 T 29-03-2018 IPR000014 PAS domain AM354_RS17055 1cade22c005a01698a1ac442d0784e59 779 Pfam PF00989 PAS fold 157 266 6.4E-18 T 29-03-2018 IPR013767 PAS fold GO:0006355 AM354_RS17055 1cade22c005a01698a1ac442d0784e59 779 SMART SM00387 394 507 3.1E-35 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS17055 1cade22c005a01698a1ac442d0784e59 779 SMART SM00073 676 773 4.3E-18 T 29-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM354_RS17055 1cade22c005a01698a1ac442d0784e59 779 SUPERFAMILY SSF55874 336 503 2.1E-41 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS17055 1cade22c005a01698a1ac442d0784e59 779 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 395 505 4.1E-30 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS17055 1cade22c005a01698a1ac442d0784e59 779 PRINTS PR00344 Bacterial sensor protein C-terminal signature 467 485 1.4E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS17055 1cade22c005a01698a1ac442d0784e59 779 PRINTS PR00344 Bacterial sensor protein C-terminal signature 449 459 1.4E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS17055 1cade22c005a01698a1ac442d0784e59 779 PRINTS PR00344 Bacterial sensor protein C-terminal signature 431 445 1.4E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS17055 1cade22c005a01698a1ac442d0784e59 779 PRINTS PR00344 Bacterial sensor protein C-terminal signature 491 504 1.4E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS17055 1cade22c005a01698a1ac442d0784e59 779 Gene3D G3DSA:3.40.50.2300 524 658 3.2E-32 T 29-03-2018 AM354_RS17055 1cade22c005a01698a1ac442d0784e59 779 Gene3D G3DSA:3.30.565.10 342 507 1.0E-43 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS17055 1cade22c005a01698a1ac442d0784e59 779 SMART SM00448 526 639 7.8E-27 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS17055 1cade22c005a01698a1ac442d0784e59 779 SUPERFAMILY SSF52172 526 663 2.13E-30 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS17055 1cade22c005a01698a1ac442d0784e59 779 PIRSF PIRSF003182 1 779 0.0 T 29-03-2018 IPR014409 Signal transduction histidine kinase, hybrid-type, aerobic respiration control ArcB GO:0000155|GO:0000160|GO:0004673|GO:0016021 AM354_RS01345 cdf646b5f0d713dec189cb7f63a837fc 276 SUPERFAMILY SSF53850 87 276 1.71E-31 T 29-03-2018 AM354_RS01345 cdf646b5f0d713dec189cb7f63a837fc 276 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 1.8E-15 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS01345 cdf646b5f0d713dec189cb7f63a837fc 276 Gene3D G3DSA:1.10.10.10 2 87 4.8E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS01345 cdf646b5f0d713dec189cb7f63a837fc 276 SUPERFAMILY SSF46785 2 110 5.45E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS01345 cdf646b5f0d713dec189cb7f63a837fc 276 Gene3D G3DSA:3.40.190.10 88 213 1.1E-20 T 29-03-2018 AM354_RS01345 cdf646b5f0d713dec189cb7f63a837fc 276 Pfam PF03466 LysR substrate binding domain 86 275 1.6E-33 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS23535 3b4380fe92d8cea481cee5a5142f4f2e 114 Pfam PF13989 YejG-like protein 4 108 1.2E-54 T 29-03-2018 IPR020489 Uncharacterised protein family YejG AM354_RS23535 3b4380fe92d8cea481cee5a5142f4f2e 114 ProDom PD073777 YEJG CYTOPLASMIC SIMILAR Y2914 YPO1269 STY2456 ECS3073 ESCHERICHIA COLI 1 114 8.0E-47 T 29-03-2018 IPR020489 Uncharacterised protein family YejG AM354_RS17685 bf5de0f9d9da834d6ca908d3ef51efc2 774 Gene3D G3DSA:2.40.170.20 256 774 8.4E-83 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS17685 bf5de0f9d9da834d6ca908d3ef51efc2 774 SMART SM00965 56 107 3.7E-13 T 29-03-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 AM354_RS17685 bf5de0f9d9da834d6ca908d3ef51efc2 774 SUPERFAMILY SSF56935 117 774 3.48E-120 T 29-03-2018 AM354_RS17685 bf5de0f9d9da834d6ca908d3ef51efc2 774 Gene3D G3DSA:2.170.130.10 128 255 8.2E-22 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS17685 bf5de0f9d9da834d6ca908d3ef51efc2 774 Pfam PF07715 TonB-dependent Receptor Plug Domain 132 244 2.9E-19 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS17685 bf5de0f9d9da834d6ca908d3ef51efc2 774 Pfam PF00593 TonB dependent receptor 329 772 1.4E-47 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS17685 bf5de0f9d9da834d6ca908d3ef51efc2 774 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 757 774 - T 29-03-2018 IPR010917 TonB-dependent receptor, conserved site AM354_RS17685 bf5de0f9d9da834d6ca908d3ef51efc2 774 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 132 774 5.6E-165 T 29-03-2018 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 AM354_RS17685 bf5de0f9d9da834d6ca908d3ef51efc2 774 Pfam PF07660 Secretin and TonB N terminus short domain 58 106 3.2E-9 T 29-03-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 AM354_RS13205 396ae2b3f6da67491b0a3ca573c0bd13 295 TIGRFAM TIGR00688 rarD: protein RarD 8 261 2.8E-102 T 29-03-2018 IPR004626 RarD protein GO:0005215|GO:0005887|GO:0006810 AM354_RS13205 396ae2b3f6da67491b0a3ca573c0bd13 295 Pfam PF00892 EamA-like transporter family 9 142 1.0E-16 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM354_RS13205 396ae2b3f6da67491b0a3ca573c0bd13 295 SUPERFAMILY SSF103481 47 145 1.7E-13 T 29-03-2018 AM354_RS13205 396ae2b3f6da67491b0a3ca573c0bd13 295 SUPERFAMILY SSF103481 191 285 4.05E-8 T 29-03-2018 AM354_RS05895 81aef2d0ebb4761d41001e9a61c79b9c 222 SUPERFAMILY SSF161098 6 200 2.62E-29 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS05895 81aef2d0ebb4761d41001e9a61c79b9c 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 215 1.4E-13 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS05895 81aef2d0ebb4761d41001e9a61c79b9c 222 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 5 110 1.6E-16 T 29-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 AM354_RS05895 81aef2d0ebb4761d41001e9a61c79b9c 222 Gene3D G3DSA:1.10.3720.10 2 221 5.6E-32 T 29-03-2018 AM354_RS02510 d79ff993e8934257768c6b84b30599ae 216 Pfam PF01872 RibD C-terminal domain 3 191 1.2E-26 T 29-03-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 AM354_RS02510 d79ff993e8934257768c6b84b30599ae 216 SUPERFAMILY SSF53597 2 198 3.27E-26 T 29-03-2018 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 AM354_RS02510 d79ff993e8934257768c6b84b30599ae 216 Gene3D G3DSA:3.40.430.10 2 195 2.1E-32 T 29-03-2018 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 AM354_RS04505 f790740cd7916ee78015c0725ac370b1 344 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 4 325 1.4E-84 T 29-03-2018 IPR011852 TRAP transporter solute receptor, TAXI family AM354_RS04505 f790740cd7916ee78015c0725ac370b1 344 Gene3D G3DSA:3.40.190.10 29 164 6.5E-20 T 29-03-2018 AM354_RS04505 f790740cd7916ee78015c0725ac370b1 344 Gene3D G3DSA:3.40.190.10 166 326 1.8E-37 T 29-03-2018 AM354_RS04505 f790740cd7916ee78015c0725ac370b1 344 Pfam PF16868 NMT1-like family 37 325 1.9E-106 T 29-03-2018 IPR011852 TRAP transporter solute receptor, TAXI family AM354_RS04505 f790740cd7916ee78015c0725ac370b1 344 SUPERFAMILY SSF53850 33 326 4.34E-58 T 29-03-2018 AM354_RS23915 bf59e225561dd071edb172f230e382ab 86 Gene3D G3DSA:1.10.1200.10 3 85 2.1E-14 T 29-03-2018 AM354_RS23915 bf59e225561dd071edb172f230e382ab 86 SUPERFAMILY SSF47336 3 82 4.45E-15 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS23915 bf59e225561dd071edb172f230e382ab 86 ProSitePatterns PS00012 Phosphopantetheine attachment site. 34 49 - T 29-03-2018 IPR006162 Phosphopantetheine attachment site AM354_RS23915 bf59e225561dd071edb172f230e382ab 86 Pfam PF00550 Phosphopantetheine attachment site 10 75 3.7E-11 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS09160 a4763272a395517d70c8d4c6cd1ebf25 525 Pfam PF05860 haemagglutination activity domain 37 157 2.1E-27 T 29-03-2018 IPR008638 Filamentous haemagglutinin, N-terminal AM354_RS09160 a4763272a395517d70c8d4c6cd1ebf25 525 SUPERFAMILY SSF51126 39 268 1.26E-52 T 29-03-2018 IPR011050 Pectin lyase fold/virulence factor AM354_RS09160 a4763272a395517d70c8d4c6cd1ebf25 525 Gene3D G3DSA:2.160.20.10 24 268 6.4E-47 T 29-03-2018 IPR012334 Pectin lyase fold AM354_RS09160 a4763272a395517d70c8d4c6cd1ebf25 525 Gene3D G3DSA:2.160.20.10 269 357 3.1E-5 T 29-03-2018 IPR012334 Pectin lyase fold AM354_RS09160 a4763272a395517d70c8d4c6cd1ebf25 525 Gene3D G3DSA:2.160.20.10 358 430 1.1E-6 T 29-03-2018 IPR012334 Pectin lyase fold AM354_RS09160 a4763272a395517d70c8d4c6cd1ebf25 525 Gene3D G3DSA:2.160.20.10 431 502 0.0025 T 29-03-2018 IPR012334 Pectin lyase fold AM354_RS09160 a4763272a395517d70c8d4c6cd1ebf25 525 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 353 386 0.0055 T 29-03-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AM354_RS09160 a4763272a395517d70c8d4c6cd1ebf25 525 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 427 464 0.3 T 29-03-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AM354_RS09160 a4763272a395517d70c8d4c6cd1ebf25 525 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 317 348 1.4 T 29-03-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AM354_RS09160 a4763272a395517d70c8d4c6cd1ebf25 525 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 392 425 1.2E-7 T 29-03-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat AM354_RS09160 a4763272a395517d70c8d4c6cd1ebf25 525 Pfam PF05594 Haemagluttinin repeat 410 477 0.029 T 29-03-2018 IPR008619 Filamentous haemagglutinin repeat AM354_RS09160 a4763272a395517d70c8d4c6cd1ebf25 525 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 56 153 6.0E-21 T 29-03-2018 IPR008638 Filamentous haemagglutinin, N-terminal AM354_RS09160 a4763272a395517d70c8d4c6cd1ebf25 525 SMART SM00912 38 158 1.1E-37 T 29-03-2018 IPR008638 Filamentous haemagglutinin, N-terminal AM354_RS20505 3b39e4f95d1ae5f074ec6b14e9493ed0 323 Pfam PF00268 Ribonucleotide reductase, small chain 13 282 2.5E-85 T 29-03-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM354_RS20505 3b39e4f95d1ae5f074ec6b14e9493ed0 323 TIGRFAM TIGR04171 RNR_1b_NrdF: ribonucleoside-diphosphate reductase, class 1b, beta subunit 11 323 1.2E-145 T 29-03-2018 IPR026494 Ribonucleoside reductase subunit beta, NrdF GO:0005971|GO:0009263 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AM354_RS20505 3b39e4f95d1ae5f074ec6b14e9493ed0 323 PIRSF PIRSF000355 2 320 3.3E-79 T 29-03-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM354_RS20505 3b39e4f95d1ae5f074ec6b14e9493ed0 323 SUPERFAMILY SSF47240 8 323 4.57E-105 T 29-03-2018 IPR009078 Ferritin-like superfamily AM354_RS20505 3b39e4f95d1ae5f074ec6b14e9493ed0 323 Gene3D G3DSA:1.10.620.20 5 296 7.9E-79 T 29-03-2018 AM354_RS20505 3b39e4f95d1ae5f074ec6b14e9493ed0 323 ProSitePatterns PS00368 Ribonucleotide reductase small subunit signature. 101 117 - T 29-03-2018 IPR030475 Ribonucleotide reductase small subunit, acitve site KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM354_RS04960 880765f6e9d5419609db9b6b5212fd97 517 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 155 167 - T 29-03-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 AM354_RS04960 880765f6e9d5419609db9b6b5212fd97 517 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 11 501 1.2E-111 T 29-03-2018 IPR005279 Dipeptide/tripeptide permease GO:0015197|GO:0015833|GO:0016020 AM354_RS04960 880765f6e9d5419609db9b6b5212fd97 517 ProSitePatterns PS01022 PTR2 family proton/oligopeptide symporters signature 1. 79 103 - T 29-03-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 AM354_RS04960 880765f6e9d5419609db9b6b5212fd97 517 SUPERFAMILY SSF103473 13 214 2.01E-32 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS04960 880765f6e9d5419609db9b6b5212fd97 517 SUPERFAMILY SSF103473 282 499 2.01E-32 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS04960 880765f6e9d5419609db9b6b5212fd97 517 Gene3D G3DSA:1.20.1250.20 7 215 2.0E-27 T 29-03-2018 AM354_RS04960 880765f6e9d5419609db9b6b5212fd97 517 Gene3D G3DSA:1.20.1250.20 284 516 6.1E-16 T 29-03-2018 AM354_RS04960 880765f6e9d5419609db9b6b5212fd97 517 Pfam PF00854 POT family 91 464 6.9E-63 T 29-03-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-427975 AM354_RS06490 33f4901b1dcb5721b9a93cd9545aa959 306 SUPERFAMILY SSF161098 91 289 4.97E-21 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS06490 33f4901b1dcb5721b9a93cd9545aa959 306 Gene3D G3DSA:1.10.3720.10 3 294 9.2E-46 T 29-03-2018 AM354_RS06490 33f4901b1dcb5721b9a93cd9545aa959 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 304 1.4E-40 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS01590 99cbbba2464b18e7a44f8a821b5ae684 370 Gene3D G3DSA:1.10.3470.10 14 356 1.6E-47 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS01590 99cbbba2464b18e7a44f8a821b5ae684 370 Pfam PF02653 Branched-chain amino acid transport system / permease component 45 352 2.4E-51 T 29-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AM354_RS25495 ebb6a05afd71c66f656a6c91d005aa0e 411 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 141 1.8E-45 T 29-03-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 AM354_RS25495 ebb6a05afd71c66f656a6c91d005aa0e 411 Pfam PF00700 Bacterial flagellin C-terminal helical region 326 410 3.7E-29 T 29-03-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 AM354_RS25495 ebb6a05afd71c66f656a6c91d005aa0e 411 Gene3D G3DSA:1.20.1330.10 40 383 1.8E-71 T 29-03-2018 AM354_RS25495 ebb6a05afd71c66f656a6c91d005aa0e 411 SUPERFAMILY SSF64518 1 411 3.66E-106 T 29-03-2018 AM354_RS25495 ebb6a05afd71c66f656a6c91d005aa0e 411 PRINTS PR00207 Flagellin signature 76 95 3.4E-29 T 29-03-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 AM354_RS25495 ebb6a05afd71c66f656a6c91d005aa0e 411 PRINTS PR00207 Flagellin signature 111 134 3.4E-29 T 29-03-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 AM354_RS25495 ebb6a05afd71c66f656a6c91d005aa0e 411 PRINTS PR00207 Flagellin signature 37 54 3.4E-29 T 29-03-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 AM354_RS22040 3b386152ad12bb534f1f9a2a8485c509 731 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 84 731 9.5E-122 T 29-03-2018 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 AM354_RS22040 3b386152ad12bb534f1f9a2a8485c509 731 Pfam PF00593 TonB dependent receptor 254 729 2.8E-29 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS22040 3b386152ad12bb534f1f9a2a8485c509 731 Gene3D G3DSA:2.170.130.10 34 195 1.5E-18 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS22040 3b386152ad12bb534f1f9a2a8485c509 731 Gene3D G3DSA:2.40.170.20 196 731 4.0E-58 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS22040 3b386152ad12bb534f1f9a2a8485c509 731 Pfam PF07715 TonB-dependent Receptor Plug Domain 82 179 3.8E-12 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS22040 3b386152ad12bb534f1f9a2a8485c509 731 SUPERFAMILY SSF56935 75 731 3.66E-97 T 29-03-2018 AM354_RS22040 3b386152ad12bb534f1f9a2a8485c509 731 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 47 - T 29-03-2018 IPR010916 TonB box, conserved site AM354_RS05890 e69eb828dbf9fca83b37c92b27ff47a7 238 Gene3D G3DSA:1.10.3720.10 1 236 2.6E-35 T 29-03-2018 AM354_RS05890 e69eb828dbf9fca83b37c92b27ff47a7 238 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 4 86 9.7E-14 T 29-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 AM354_RS05890 e69eb828dbf9fca83b37c92b27ff47a7 238 SUPERFAMILY SSF161098 7 217 1.7E-36 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS05890 e69eb828dbf9fca83b37c92b27ff47a7 238 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 25 226 6.6E-15 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS04235 f795501bec3bffd3156481418fbc2cfa 409 Pfam PF07687 Peptidase dimerisation domain 206 303 1.4E-11 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain AM354_RS04235 f795501bec3bffd3156481418fbc2cfa 409 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 138 176 - T 29-03-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 AM354_RS04235 f795501bec3bffd3156481418fbc2cfa 409 Gene3D G3DSA:3.40.630.10 1 408 2.6E-46 T 29-03-2018 AM354_RS04235 f795501bec3bffd3156481418fbc2cfa 409 Hamap MF_00550 Peptidase T [pepT]. 1 404 53.83 T 29-03-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 AM354_RS04235 f795501bec3bffd3156481418fbc2cfa 409 Pfam PF01546 Peptidase family M20/M25/M40 139 401 8.3E-16 T 29-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AM354_RS04235 f795501bec3bffd3156481418fbc2cfa 409 TIGRFAM TIGR01882 peptidase-T: peptidase T 2 408 2.6E-149 T 29-03-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 AM354_RS04235 f795501bec3bffd3156481418fbc2cfa 409 PIRSF PIRSF037215 1 408 2.3E-178 T 29-03-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 AM354_RS04235 f795501bec3bffd3156481418fbc2cfa 409 SUPERFAMILY SSF53187 322 406 5.47E-80 T 29-03-2018 AM354_RS04235 f795501bec3bffd3156481418fbc2cfa 409 SUPERFAMILY SSF53187 1 209 5.47E-80 T 29-03-2018 AM354_RS04235 f795501bec3bffd3156481418fbc2cfa 409 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 73 82 - T 29-03-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 AM354_RS04235 f795501bec3bffd3156481418fbc2cfa 409 SUPERFAMILY SSF55031 208 320 5.02E-41 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain AM354_RS07890 9b2bd317a8cee91be0ab9963b05f3c25 320 Pfam PF01545 Cation efflux family 18 210 9.9E-53 T 29-03-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AM354_RS07890 9b2bd317a8cee91be0ab9963b05f3c25 320 Gene3D G3DSA:3.30.70.1350 212 291 1.2E-12 T 29-03-2018 IPR027470 Cation efflux protein, cytoplasmic domain AM354_RS07890 9b2bd317a8cee91be0ab9963b05f3c25 320 SUPERFAMILY SSF160240 224 289 4.97E-10 T 29-03-2018 AM354_RS07890 9b2bd317a8cee91be0ab9963b05f3c25 320 Gene3D G3DSA:1.20.1510.10 13 210 1.6E-62 T 29-03-2018 AM354_RS07890 9b2bd317a8cee91be0ab9963b05f3c25 320 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 14 290 1.3E-97 T 29-03-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AM354_RS07890 9b2bd317a8cee91be0ab9963b05f3c25 320 SUPERFAMILY SSF161111 13 211 3.01E-62 T 29-03-2018 AM354_RS20165 9971a5c94470d9594e2288856fae2149 887 Gene3D G3DSA:3.30.70.260 698 781 8.4E-10 T 29-03-2018 AM354_RS20165 9971a5c94470d9594e2288856fae2149 887 Gene3D G3DSA:1.20.120.330 188 331 6.7E-25 T 29-03-2018 AM354_RS20165 9971a5c94470d9594e2288856fae2149 887 SUPERFAMILY SSF81593 209 323 3.06E-10 T 29-03-2018 AM354_RS20165 9971a5c94470d9594e2288856fae2149 887 SUPERFAMILY SSF81301 22 185 3.93E-24 T 29-03-2018 AM354_RS20165 9971a5c94470d9594e2288856fae2149 887 Pfam PF01842 ACT domain 813 874 1.5E-8 T 29-03-2018 IPR002912 ACT domain AM354_RS20165 9971a5c94470d9594e2288856fae2149 887 SUPERFAMILY SSF55021 810 874 3.09E-9 T 29-03-2018 AM354_RS20165 9971a5c94470d9594e2288856fae2149 887 PIRSF PIRSF006288 19 887 0.0 T 29-03-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 AM354_RS20165 9971a5c94470d9594e2288856fae2149 887 Gene3D G3DSA:3.30.70.260 806 882 1.1E-11 T 29-03-2018 AM354_RS20165 9971a5c94470d9594e2288856fae2149 887 SUPERFAMILY SSF55021 702 773 1.5E-8 T 29-03-2018 AM354_RS20165 9971a5c94470d9594e2288856fae2149 887 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 1 887 354.044 T 29-03-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 AM354_RS20165 9971a5c94470d9594e2288856fae2149 887 SUPERFAMILY SSF109604 454 629 8.16E-14 T 29-03-2018 AM354_RS20165 9971a5c94470d9594e2288856fae2149 887 Gene3D G3DSA:3.30.460.10 50 183 5.5E-23 T 29-03-2018 AM354_RS20165 9971a5c94470d9594e2288856fae2149 887 Pfam PF01966 HD domain 465 598 2.6E-16 T 29-03-2018 IPR006674 HD domain AM354_RS20165 9971a5c94470d9594e2288856fae2149 887 SMART SM00471 461 608 2.3E-12 T 29-03-2018 IPR003607 HD/PDEase domain AM354_RS20165 9971a5c94470d9594e2288856fae2149 887 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 47 881 1.1E-303 T 29-03-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 AM354_RS20165 9971a5c94470d9594e2288856fae2149 887 Pfam PF08335 GlnD PII-uridylyltransferase 189 328 9.9E-38 T 29-03-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 AM354_RS20165 9971a5c94470d9594e2288856fae2149 887 Gene3D G3DSA:1.10.3090.10 357 646 2.0E-38 T 29-03-2018 AM354_RS20165 9971a5c94470d9594e2288856fae2149 887 Pfam PF01909 Nucleotidyltransferase domain 81 116 2.4E-6 T 29-03-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 AM354_RS24240 058aaee29f3b99023fea409b5110a530 215 Gene3D G3DSA:2.60.120.590 14 215 1.8E-50 T 29-03-2018 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like AM354_RS24240 058aaee29f3b99023fea409b5110a530 215 SUPERFAMILY SSF51197 18 214 5.36E-60 T 29-03-2018 AM354_RS24240 058aaee29f3b99023fea409b5110a530 215 Pfam PF13532 2OG-Fe(II) oxygenase superfamily 21 212 5.0E-55 T 29-03-2018 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like AM354_RS18585 bb3a9d2284ab81d33639b9dc8fddae92 186 Gene3D G3DSA:3.30.70.1100 85 186 1.3E-20 T 29-03-2018 AM354_RS18585 bb3a9d2284ab81d33639b9dc8fddae92 186 Pfam PF06778 Chlorite dismutase 38 179 4.4E-10 T 29-03-2018 IPR010644 Putative heme-dependent peroxidase/Chlorite dismutase AM354_RS18585 bb3a9d2284ab81d33639b9dc8fddae92 186 SUPERFAMILY SSF54909 40 181 4.02E-20 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel AM354_RS18450 38816da6a9e413af452acf5b3d4e6c0f 423 Gene3D G3DSA:3.30.1490.100 246 361 2.0E-20 T 29-03-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AM354_RS18450 38816da6a9e413af452acf5b3d4e6c0f 423 Pfam PF13438 Domain of unknown function (DUF4113) 371 422 3.5E-17 T 29-03-2018 IPR025188 Domain of unknown function DUF4113 AM354_RS18450 38816da6a9e413af452acf5b3d4e6c0f 423 Gene3D G3DSA:1.10.150.20 173 245 1.5E-12 T 29-03-2018 AM354_RS18450 38816da6a9e413af452acf5b3d4e6c0f 423 Pfam PF00817 impB/mucB/samB family 5 149 1.4E-36 T 29-03-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AM354_RS18450 38816da6a9e413af452acf5b3d4e6c0f 423 Pfam PF11798 IMS family HHH motif 172 199 1.0E-5 T 29-03-2018 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 AM354_RS18450 38816da6a9e413af452acf5b3d4e6c0f 423 SUPERFAMILY SSF56672 1 236 4.98E-66 T 29-03-2018 AM354_RS18450 38816da6a9e413af452acf5b3d4e6c0f 423 Gene3D G3DSA:3.30.70.270 112 172 5.9E-10 T 29-03-2018 AM354_RS18450 38816da6a9e413af452acf5b3d4e6c0f 423 Gene3D G3DSA:3.30.70.270 37 111 1.9E-16 T 29-03-2018 AM354_RS18450 38816da6a9e413af452acf5b3d4e6c0f 423 Pfam PF11799 impB/mucB/samB family C-terminal domain 242 355 4.6E-14 T 29-03-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AM354_RS07595 fa6de18b0a52e52be9851d1d59154d7d 250 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 188 0.0071 T 29-03-2018 AM354_RS07595 fa6de18b0a52e52be9851d1d59154d7d 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 5.9E-12 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS07595 fa6de18b0a52e52be9851d1d59154d7d 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 5.9E-12 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS07595 fa6de18b0a52e52be9851d1d59154d7d 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 5.9E-12 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS07595 fa6de18b0a52e52be9851d1d59154d7d 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 6.5E-45 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS07595 fa6de18b0a52e52be9851d1d59154d7d 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 6.5E-45 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS07595 fa6de18b0a52e52be9851d1d59154d7d 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 6.5E-45 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS07595 fa6de18b0a52e52be9851d1d59154d7d 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 6.5E-45 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS07595 fa6de18b0a52e52be9851d1d59154d7d 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 6.5E-45 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS07595 fa6de18b0a52e52be9851d1d59154d7d 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 6.5E-45 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS07595 fa6de18b0a52e52be9851d1d59154d7d 250 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 248 9.4E-62 T 29-03-2018 AM354_RS07595 fa6de18b0a52e52be9851d1d59154d7d 250 Gene3D G3DSA:3.40.50.720 44 250 2.3E-55 T 29-03-2018 AM354_RS07595 fa6de18b0a52e52be9851d1d59154d7d 250 Gene3D G3DSA:3.40.50.720 1 43 4.1E-11 T 29-03-2018 AM354_RS07595 fa6de18b0a52e52be9851d1d59154d7d 250 SUPERFAMILY SSF51735 5 249 3.28E-75 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS07595 fa6de18b0a52e52be9851d1d59154d7d 250 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM354_RS16115 8c2d9e4eaed98d452796b826d9640a2d 118 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 1.5E-53 T 29-03-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS16115 8c2d9e4eaed98d452796b826d9640a2d 118 Gene3D G3DSA:4.10.910.10 67 84 1.7E-17 T 29-03-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16115 8c2d9e4eaed98d452796b826d9640a2d 118 Pfam PF00416 Ribosomal protein S13/S18 3 108 1.2E-33 T 29-03-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16115 8c2d9e4eaed98d452796b826d9640a2d 118 Gene3D G3DSA:4.10.910.10 85 118 9.7E-26 T 29-03-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16115 8c2d9e4eaed98d452796b826d9640a2d 118 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 118 26.298 T 29-03-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16115 8c2d9e4eaed98d452796b826d9640a2d 118 SUPERFAMILY SSF46946 2 114 2.35E-46 T 29-03-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 AM354_RS16115 8c2d9e4eaed98d452796b826d9640a2d 118 Gene3D G3DSA:1.10.8.50 1 66 7.7E-23 T 29-03-2018 AM354_RS16115 8c2d9e4eaed98d452796b826d9640a2d 118 ProSitePatterns PS00646 Ribosomal protein S13 signature. 87 100 - T 29-03-2018 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16115 8c2d9e4eaed98d452796b826d9640a2d 118 PIRSF PIRSF002134 1 118 6.1E-43 T 29-03-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS11980 7c9db9743cf1e7fa6422337e94c0dd91 314 Gene3D G3DSA:2.30.130.10 250 313 2.5E-15 T 29-03-2018 IPR002478 PUA domain GO:0003723 AM354_RS11980 7c9db9743cf1e7fa6422337e94c0dd91 314 Gene3D G3DSA:3.30.2350.10 10 231 5.1E-81 T 29-03-2018 AM354_RS11980 7c9db9743cf1e7fa6422337e94c0dd91 314 SUPERFAMILY SSF88697 251 310 5.96E-14 T 29-03-2018 IPR015947 PUA-like domain AM354_RS11980 7c9db9743cf1e7fa6422337e94c0dd91 314 SUPERFAMILY SSF55120 10 248 3.17E-84 T 29-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS11980 7c9db9743cf1e7fa6422337e94c0dd91 314 Pfam PF09157 Pseudouridine synthase II TruB, C-terminal 252 309 1.5E-19 T 29-03-2018 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS11980 7c9db9743cf1e7fa6422337e94c0dd91 314 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 181 248 2.1E-22 T 29-03-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 AM354_RS11980 7c9db9743cf1e7fa6422337e94c0dd91 314 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 11 309 19.009 T 29-03-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS11980 7c9db9743cf1e7fa6422337e94c0dd91 314 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 33 180 3.8E-59 T 29-03-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 AM354_RS11980 7c9db9743cf1e7fa6422337e94c0dd91 314 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 12 219 5.6E-94 T 29-03-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS14055 5cd210396b8ac1f9cf6e4fa888e6b870 487 Hamap MF_01626 Protein ViaA [viaA]. 1 487 55.432 T 29-03-2018 IPR023481 Uncharacterised protein family ViaA AM354_RS14055 5cd210396b8ac1f9cf6e4fa888e6b870 487 Gene3D G3DSA:3.40.50.410 304 468 6.0E-17 T 29-03-2018 IPR002035 von Willebrand factor, type A AM354_RS14055 5cd210396b8ac1f9cf6e4fa888e6b870 487 SUPERFAMILY SSF53300 322 463 2.78E-17 T 29-03-2018 IPR002035 von Willebrand factor, type A AM354_RS14055 5cd210396b8ac1f9cf6e4fa888e6b870 487 SMART SM00327 323 487 7.5E-7 T 29-03-2018 IPR002035 von Willebrand factor, type A AM354_RS05420 96e3ac14723890b64c6e248995ec54b6 684 SUPERFAMILY SSF52540 195 348 1.29E-79 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS05420 96e3ac14723890b64c6e248995ec54b6 684 SUPERFAMILY SSF52540 385 675 1.29E-79 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS05420 96e3ac14723890b64c6e248995ec54b6 684 Gene3D G3DSA:3.40.50.300 500 683 1.4E-25 T 29-03-2018 AM354_RS05420 96e3ac14723890b64c6e248995ec54b6 684 Pfam PF00580 UvrD/REP helicase N-terminal domain 197 488 8.7E-39 T 29-03-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 AM354_RS05420 96e3ac14723890b64c6e248995ec54b6 684 Pfam PF12462 DNA helicase IV / RNA helicase N terminal 1 164 4.4E-67 T 29-03-2018 IPR022161 DNA helicase IV, N-terminal domain AM354_RS05420 96e3ac14723890b64c6e248995ec54b6 684 Gene3D G3DSA:3.40.50.300 342 499 1.7E-22 T 29-03-2018 AM354_RS05420 96e3ac14723890b64c6e248995ec54b6 684 Gene3D G3DSA:3.40.50.300 188 332 6.2E-20 T 29-03-2018 AM354_RS05420 96e3ac14723890b64c6e248995ec54b6 684 Pfam PF13361 UvrD-like helicase C-terminal domain 563 659 2.9E-12 T 29-03-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AM354_RS24120 bcda26e51f5ff3ad7d75ca421c133cc8 255 SMART SM00382 27 217 1.1E-8 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS24120 bcda26e51f5ff3ad7d75ca421c133cc8 255 Pfam PF00005 ABC transporter 19 159 4.9E-23 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS24120 bcda26e51f5ff3ad7d75ca421c133cc8 255 SUPERFAMILY SSF52540 2 209 5.74E-48 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS24120 bcda26e51f5ff3ad7d75ca421c133cc8 255 Gene3D G3DSA:3.40.50.300 1 240 1.5E-46 T 29-03-2018 AM354_RS23210 594cf42bec4f344a60cd2674ea1c742d 254 SUPERFAMILY SSF51735 8 252 7.87E-81 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS23210 594cf42bec4f344a60cd2674ea1c742d 254 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 10 149 0.0028 T 29-03-2018 AM354_RS23210 594cf42bec4f344a60cd2674ea1c742d 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 9.4E-13 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS23210 594cf42bec4f344a60cd2674ea1c742d 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 9.4E-13 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS23210 594cf42bec4f344a60cd2674ea1c742d 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 9.4E-13 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS23210 594cf42bec4f344a60cd2674ea1c742d 254 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM354_RS23210 594cf42bec4f344a60cd2674ea1c742d 254 Pfam PF00106 short chain dehydrogenase 10 202 1.7E-63 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS23210 594cf42bec4f344a60cd2674ea1c742d 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 1.6E-41 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS23210 594cf42bec4f344a60cd2674ea1c742d 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 1.6E-41 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS23210 594cf42bec4f344a60cd2674ea1c742d 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 1.6E-41 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS23210 594cf42bec4f344a60cd2674ea1c742d 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 1.6E-41 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS23210 594cf42bec4f344a60cd2674ea1c742d 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 1.6E-41 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS23210 594cf42bec4f344a60cd2674ea1c742d 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 1.6E-41 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS23210 594cf42bec4f344a60cd2674ea1c742d 254 Gene3D G3DSA:3.40.50.720 46 254 2.5E-64 T 29-03-2018 AM354_RS23210 594cf42bec4f344a60cd2674ea1c742d 254 Gene3D G3DSA:3.40.50.720 2 45 1.1E-9 T 29-03-2018 AM354_RS03675 6737c0c199a25e9820b264c887bb7f2b 333 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 29-03-2018 AM354_RS03675 6737c0c199a25e9820b264c887bb7f2b 333 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 4.4E-5 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS03675 6737c0c199a25e9820b264c887bb7f2b 333 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 4.4E-5 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS03675 6737c0c199a25e9820b264c887bb7f2b 333 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 64 329 1.1E-50 T 29-03-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain AM354_RS03675 6737c0c199a25e9820b264c887bb7f2b 333 SUPERFAMILY SSF47413 1 56 5.27E-16 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS03675 6737c0c199a25e9820b264c887bb7f2b 333 Gene3D G3DSA:3.40.50.2300 55 175 7.8E-17 T 29-03-2018 AM354_RS03675 6737c0c199a25e9820b264c887bb7f2b 333 Gene3D G3DSA:1.10.260.40 3 54 5.9E-18 T 29-03-2018 AM354_RS03675 6737c0c199a25e9820b264c887bb7f2b 333 SUPERFAMILY SSF53822 63 332 3.26E-41 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS03675 6737c0c199a25e9820b264c887bb7f2b 333 Gene3D G3DSA:3.40.50.2300 176 315 1.5E-27 T 29-03-2018 AM354_RS03675 6737c0c199a25e9820b264c887bb7f2b 333 SMART SM00354 1 73 1.4E-21 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS03675 6737c0c199a25e9820b264c887bb7f2b 333 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 6.4E-17 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS12940 bdc27e38173a6dc8c7ab3708b64fb791 176 Pfam PF09335 SNARE associated Golgi protein 41 164 7.9E-14 T 29-03-2018 IPR032816 SNARE associated Golgi protein AM354_RS02960 9a902c665da262e4036552461d94238c 126 Gene3D G3DSA:3.30.1330.40 1 126 4.2E-26 T 29-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like AM354_RS02960 9a902c665da262e4036552461d94238c 126 Pfam PF01042 Endoribonuclease L-PSP 13 123 3.9E-20 T 29-03-2018 IPR006175 YjgF/YER057c/UK114 family AM354_RS02960 9a902c665da262e4036552461d94238c 126 SUPERFAMILY SSF55298 4 125 4.08E-28 T 29-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like AM354_RS13120 e9516bafa71abf9bcbc2d1ee0a7a6bed 81 Pfam PF01206 Sulfurtransferase TusA 11 79 1.2E-24 T 29-03-2018 IPR001455 TusA-like domain AM354_RS13120 e9516bafa71abf9bcbc2d1ee0a7a6bed 81 Hamap MF_00413 Sulfurtransferase TusA [tusA]. 3 81 29.666 T 29-03-2018 IPR022931 Sulfur carrier protein TusA GO:0002143|GO:0097163 AM354_RS13120 e9516bafa71abf9bcbc2d1ee0a7a6bed 81 SUPERFAMILY SSF64307 4 80 1.57E-26 T 29-03-2018 IPR001455 TusA-like domain AM354_RS13120 e9516bafa71abf9bcbc2d1ee0a7a6bed 81 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 12 36 - T 29-03-2018 IPR001455 TusA-like domain AM354_RS13120 e9516bafa71abf9bcbc2d1ee0a7a6bed 81 Gene3D G3DSA:3.30.110.40 4 81 3.8E-29 T 29-03-2018 IPR001455 TusA-like domain AM354_RS19130 72dd4911e5a1e8f8abfa3ae1244fda76 384 Gene3D G3DSA:3.30.300.10 11 133 7.5E-45 T 29-03-2018 AM354_RS19130 72dd4911e5a1e8f8abfa3ae1244fda76 384 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 2 381 59.6 T 29-03-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AM354_RS19130 72dd4911e5a1e8f8abfa3ae1244fda76 384 PIRSF PIRSF000497 1 381 1.9E-174 T 29-03-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AM354_RS19130 72dd4911e5a1e8f8abfa3ae1244fda76 384 SUPERFAMILY SSF55973 3 109 1.49E-47 T 29-03-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AM354_RS19130 72dd4911e5a1e8f8abfa3ae1244fda76 384 SUPERFAMILY SSF55973 112 232 5.1E-52 T 29-03-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AM354_RS19130 72dd4911e5a1e8f8abfa3ae1244fda76 384 Gene3D G3DSA:3.30.300.10 246 383 2.3E-49 T 29-03-2018 AM354_RS19130 72dd4911e5a1e8f8abfa3ae1244fda76 384 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 259 267 - T 29-03-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AM354_RS19130 72dd4911e5a1e8f8abfa3ae1244fda76 384 Pfam PF02772 S-adenosylmethionine synthetase, central domain 114 231 1.1E-45 T 29-03-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AM354_RS19130 72dd4911e5a1e8f8abfa3ae1244fda76 384 SUPERFAMILY SSF55973 233 382 6.67E-71 T 29-03-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AM354_RS19130 72dd4911e5a1e8f8abfa3ae1244fda76 384 Gene3D G3DSA:3.30.300.10 134 233 2.7E-43 T 29-03-2018 AM354_RS19130 72dd4911e5a1e8f8abfa3ae1244fda76 384 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 233 369 2.1E-69 T 29-03-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AM354_RS19130 72dd4911e5a1e8f8abfa3ae1244fda76 384 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 116 126 - T 29-03-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AM354_RS19130 72dd4911e5a1e8f8abfa3ae1244fda76 384 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 4 101 4.2E-43 T 29-03-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AM354_RS19130 72dd4911e5a1e8f8abfa3ae1244fda76 384 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 5 380 1.6E-199 T 29-03-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AM354_RS03395 1bd7db0526752a6c736b2c229eee2abc 118 PRINTS PR00062 Ribosomal protein L20 signature 75 101 1.2E-42 T 29-03-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS03395 1bd7db0526752a6c736b2c229eee2abc 118 PRINTS PR00062 Ribosomal protein L20 signature 42 71 1.2E-42 T 29-03-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS03395 1bd7db0526752a6c736b2c229eee2abc 118 PRINTS PR00062 Ribosomal protein L20 signature 12 41 1.2E-42 T 29-03-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS03395 1bd7db0526752a6c736b2c229eee2abc 118 SUPERFAMILY SSF74731 3 117 2.09E-50 T 29-03-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS03395 1bd7db0526752a6c736b2c229eee2abc 118 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 30.927 T 29-03-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS03395 1bd7db0526752a6c736b2c229eee2abc 118 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 29-03-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS03395 1bd7db0526752a6c736b2c229eee2abc 118 Gene3D G3DSA:1.10.1900.20 55 116 2.9E-29 T 29-03-2018 IPR035566 Ribosomal protein L20 C-terminal domain Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS03395 1bd7db0526752a6c736b2c229eee2abc 118 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 1.7E-52 T 29-03-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS03395 1bd7db0526752a6c736b2c229eee2abc 118 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 21 72 4.0E-14 T 29-03-2018 AM354_RS03395 1bd7db0526752a6c736b2c229eee2abc 118 Pfam PF00453 Ribosomal protein L20 3 109 1.0E-48 T 29-03-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS07155 e317d2f7bd59c52829854eccf3b00eae 236 SMART SM00345 19 77 1.1E-11 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS07155 e317d2f7bd59c52829854eccf3b00eae 236 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 77 3.1E-15 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS07155 e317d2f7bd59c52829854eccf3b00eae 236 SUPERFAMILY SSF48008 85 218 2.12E-25 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM354_RS07155 e317d2f7bd59c52829854eccf3b00eae 236 SMART SM00895 87 211 3.3E-17 T 29-03-2018 IPR011711 GntR, C-terminal AM354_RS07155 e317d2f7bd59c52829854eccf3b00eae 236 Gene3D G3DSA:1.10.10.10 3 79 1.4E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS07155 e317d2f7bd59c52829854eccf3b00eae 236 SUPERFAMILY SSF46785 11 81 8.51E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS07155 e317d2f7bd59c52829854eccf3b00eae 236 Pfam PF07729 FCD domain 87 210 7.7E-20 T 29-03-2018 IPR011711 GntR, C-terminal AM354_RS07155 e317d2f7bd59c52829854eccf3b00eae 236 Gene3D G3DSA:1.20.120.530 82 227 1.1E-27 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM354_RS11285 4a247a570e7116459611693a3f55732d 265 Pfam PF17409 MoaF C-terminal domain 149 260 5.3E-51 T 29-03-2018 IPR035348 MoaF, C-terminal domain AM354_RS11285 4a247a570e7116459611693a3f55732d 265 Gene3D G3DSA:2.40.128.20 28 122 1.9E-14 T 29-03-2018 IPR012674 Calycin AM354_RS11285 4a247a570e7116459611693a3f55732d 265 Gene3D G3DSA:2.40.128.20 151 257 1.2E-20 T 29-03-2018 IPR012674 Calycin AM354_RS11285 4a247a570e7116459611693a3f55732d 265 Pfam PF10703 MoaF N-terminal domain 6 109 1.1E-30 T 29-03-2018 IPR024724 Molybdenum cofactor biosynthesis protein F, N-terminal AM354_RS01695 1c0cdf96f48a4be6cf0f76120360192d 539 Gene3D G3DSA:3.90.76.10 53 172 1.4E-32 T 29-03-2018 AM354_RS01695 1c0cdf96f48a4be6cf0f76120360192d 539 Gene3D G3DSA:3.10.105.10 309 509 1.6E-52 T 29-03-2018 AM354_RS01695 1c0cdf96f48a4be6cf0f76120360192d 539 SUPERFAMILY SSF53850 38 536 2.53E-130 T 29-03-2018 AM354_RS01695 1c0cdf96f48a4be6cf0f76120360192d 539 Gene3D G3DSA:3.40.190.10 173 308 2.9E-35 T 29-03-2018 AM354_RS01695 1c0cdf96f48a4be6cf0f76120360192d 539 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 81 459 5.9E-80 T 29-03-2018 IPR000914 Solute-binding protein family 5 domain AM354_RS01695 1c0cdf96f48a4be6cf0f76120360192d 539 PIRSF PIRSF002741 3 539 5.5E-107 T 29-03-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AM354_RS22725 ebecdf9b31e19bf9fa6aa956b288b4f0 78 TIGRFAM TIGR03141 cytochro_ccmD: heme exporter protein CcmD 12 57 4.4E-20 T 29-03-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 AM354_RS22725 ebecdf9b31e19bf9fa6aa956b288b4f0 78 Pfam PF04995 Heme exporter protein D (CcmD) 15 58 1.8E-18 T 29-03-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 AM354_RS05280 440a3d009812a320110408e14d1c0e02 191 SUPERFAMILY SSF47413 16 81 2.33E-15 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS05280 440a3d009812a320110408e14d1c0e02 191 Pfam PF07883 Cupin domain 119 186 4.0E-9 T 29-03-2018 IPR013096 Cupin 2, conserved barrel AM354_RS05280 440a3d009812a320110408e14d1c0e02 191 SMART SM00530 22 77 1.1E-13 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM354_RS05280 440a3d009812a320110408e14d1c0e02 191 Gene3D G3DSA:1.10.260.40 1 77 5.5E-16 T 29-03-2018 AM354_RS05280 440a3d009812a320110408e14d1c0e02 191 SUPERFAMILY SSF51182 100 186 4.86E-15 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS05280 440a3d009812a320110408e14d1c0e02 191 Gene3D G3DSA:2.60.120.10 78 190 4.6E-12 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS05280 440a3d009812a320110408e14d1c0e02 191 Pfam PF01381 Helix-turn-helix 24 77 2.6E-12 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM354_RS19220 9f8c4886775acb5d1c141c198b39038c 546 SUPERFAMILY SSF52467 159 351 1.8E-34 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM354_RS19220 9f8c4886775acb5d1c141c198b39038c 546 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 195 324 2.8E-23 T 29-03-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AM354_RS19220 9f8c4886775acb5d1c141c198b39038c 546 SUPERFAMILY SSF52518 4 184 1.48E-39 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS19220 9f8c4886775acb5d1c141c198b39038c 546 Gene3D G3DSA:3.40.50.970 1 199 6.7E-39 T 29-03-2018 AM354_RS19220 9f8c4886775acb5d1c141c198b39038c 546 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 6 172 1.3E-41 T 29-03-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AM354_RS19220 9f8c4886775acb5d1c141c198b39038c 546 SUPERFAMILY SSF52518 364 533 3.64E-42 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS19220 9f8c4886775acb5d1c141c198b39038c 546 Gene3D G3DSA:3.40.50.1220 200 342 2.4E-33 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM354_RS19220 9f8c4886775acb5d1c141c198b39038c 546 Gene3D G3DSA:3.40.50.970 343 544 4.7E-33 T 29-03-2018 AM354_RS19220 9f8c4886775acb5d1c141c198b39038c 546 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 387 527 4.7E-30 T 29-03-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AM354_RS19220 9f8c4886775acb5d1c141c198b39038c 546 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 417 436 - T 29-03-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 AM354_RS24320 557121ac2d4f48d12d098da282d3130b 307 Gene3D G3DSA:3.40.190.10 177 263 1.3E-11 T 29-03-2018 AM354_RS24320 557121ac2d4f48d12d098da282d3130b 307 Gene3D G3DSA:3.40.190.10 80 176 2.4E-16 T 29-03-2018 AM354_RS24320 557121ac2d4f48d12d098da282d3130b 307 Gene3D G3DSA:1.10.10.10 1 79 2.1E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS24320 557121ac2d4f48d12d098da282d3130b 307 Pfam PF03466 LysR substrate binding domain 88 290 2.8E-29 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS24320 557121ac2d4f48d12d098da282d3130b 307 SUPERFAMILY SSF53850 89 295 1.35E-28 T 29-03-2018 AM354_RS24320 557121ac2d4f48d12d098da282d3130b 307 SUPERFAMILY SSF46785 1 86 2.67E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS24320 557121ac2d4f48d12d098da282d3130b 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.6E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS24320 557121ac2d4f48d12d098da282d3130b 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.6E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS24320 557121ac2d4f48d12d098da282d3130b 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.6E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS24320 557121ac2d4f48d12d098da282d3130b 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 9.7E-22 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS08375 69fe470508d58a59afbcc103797e4e55 357 Gene3D G3DSA:3.30.70.1070 284 357 1.2E-15 T 29-03-2018 IPR007730 Sporulation-related domain GO:0042834 AM354_RS08375 69fe470508d58a59afbcc103797e4e55 357 SUPERFAMILY SSF50685 77 164 1.94E-7 T 29-03-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain AM354_RS08375 69fe470508d58a59afbcc103797e4e55 357 Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. 16 165 22.892 T 29-03-2018 IPR034718 Endolytic peptidoglycan transglycosylase RlpA GO:0016829 AM354_RS08375 69fe470508d58a59afbcc103797e4e55 357 SUPERFAMILY SSF110997 282 353 4.58E-16 T 29-03-2018 IPR007730 Sporulation-related domain GO:0042834 AM354_RS08375 69fe470508d58a59afbcc103797e4e55 357 Gene3D G3DSA:2.40.40.10 54 168 5.2E-21 T 29-03-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain AM354_RS08375 69fe470508d58a59afbcc103797e4e55 357 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 77 175 7.3E-36 T 29-03-2018 IPR012997 Rare lipoprotein A AM354_RS08375 69fe470508d58a59afbcc103797e4e55 357 Pfam PF05036 Sporulation related domain 282 354 6.6E-17 T 29-03-2018 IPR007730 Sporulation-related domain GO:0042834 AM354_RS08375 69fe470508d58a59afbcc103797e4e55 357 Pfam PF03330 Lytic transglycolase 75 163 4.7E-24 T 29-03-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain AM354_RS22255 4e8c142d22a26ad2e3b28a085a657483 293 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 64 279 7.1E-49 T 29-03-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 AM354_RS22255 4e8c142d22a26ad2e3b28a085a657483 293 SUPERFAMILY SSF53187 206 282 4.39E-52 T 29-03-2018 AM354_RS22255 4e8c142d22a26ad2e3b28a085a657483 293 SUPERFAMILY SSF53187 62 158 4.39E-52 T 29-03-2018 AM354_RS22255 4e8c142d22a26ad2e3b28a085a657483 293 SMART SM00646 124 279 3.7E-64 T 29-03-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 AM354_RS22255 4e8c142d22a26ad2e3b28a085a657483 293 Gene3D G3DSA:3.40.630.40 49 282 1.1E-53 T 29-03-2018 AM354_RS18035 8185da7ee8c7b2b192c77b67c43e0a77 344 SUPERFAMILY SSF53822 66 322 1.67E-48 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS18035 8185da7ee8c7b2b192c77b67c43e0a77 344 Pfam PF13377 Periplasmic binding protein-like domain 184 333 3.0E-12 T 29-03-2018 AM354_RS18035 8185da7ee8c7b2b192c77b67c43e0a77 344 SUPERFAMILY SSF47413 7 64 4.97E-16 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS18035 8185da7ee8c7b2b192c77b67c43e0a77 344 ProSitePatterns PS00356 LacI-type HTH domain signature. 9 27 - T 29-03-2018 AM354_RS18035 8185da7ee8c7b2b192c77b67c43e0a77 344 Gene3D G3DSA:1.10.10.10 1 20 0.2 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS18035 8185da7ee8c7b2b192c77b67c43e0a77 344 TIGRFAM TIGR02417 fruct_sucro_rep: D-fructose-responsive transcription factor 8 333 4.7E-125 T 29-03-2018 IPR012781 D-fructose-responsive transcription factor GO:0003677|GO:0006355|GO:0009750 AM354_RS18035 8185da7ee8c7b2b192c77b67c43e0a77 344 Gene3D G3DSA:3.40.50.2300 181 310 1.3E-21 T 29-03-2018 AM354_RS18035 8185da7ee8c7b2b192c77b67c43e0a77 344 Gene3D G3DSA:1.10.260.40 21 62 1.3E-21 T 29-03-2018 AM354_RS18035 8185da7ee8c7b2b192c77b67c43e0a77 344 SMART SM00354 6 79 1.3E-33 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS18035 8185da7ee8c7b2b192c77b67c43e0a77 344 Gene3D G3DSA:3.40.50.2300 63 180 2.7E-27 T 29-03-2018 AM354_RS18035 8185da7ee8c7b2b192c77b67c43e0a77 344 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 56 3.8E-17 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS11325 de35734ce53e36db48bafaddb04dd88a 370 Pfam PF00850 Histone deacetylase domain 41 328 8.5E-76 T 29-03-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AM354_RS11325 de35734ce53e36db48bafaddb04dd88a 370 SUPERFAMILY SSF52768 2 347 2.59E-101 T 29-03-2018 AM354_RS11325 de35734ce53e36db48bafaddb04dd88a 370 Gene3D G3DSA:3.40.800.20 30 364 8.1E-98 T 29-03-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AM354_RS11325 de35734ce53e36db48bafaddb04dd88a 370 PRINTS PR01270 Histone deacetylase superfamily signature 174 189 2.6E-14 T 29-03-2018 IPR000286 Histone deacetylase superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AM354_RS11325 de35734ce53e36db48bafaddb04dd88a 370 PRINTS PR01270 Histone deacetylase superfamily signature 140 163 2.6E-14 T 29-03-2018 IPR000286 Histone deacetylase superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AM354_RS11325 de35734ce53e36db48bafaddb04dd88a 370 PRINTS PR01270 Histone deacetylase superfamily signature 259 269 2.6E-14 T 29-03-2018 IPR000286 Histone deacetylase superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AM354_RS24380 8e5ebaf39953fc08b2ddf245ccfd5eec 244 Gene3D G3DSA:3.40.50.720 2 233 5.6E-37 T 29-03-2018 AM354_RS24380 8e5ebaf39953fc08b2ddf245ccfd5eec 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 3.8E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS24380 8e5ebaf39953fc08b2ddf245ccfd5eec 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 3.8E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS24380 8e5ebaf39953fc08b2ddf245ccfd5eec 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 158 3.8E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS24380 8e5ebaf39953fc08b2ddf245ccfd5eec 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 175 3.8E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS24380 8e5ebaf39953fc08b2ddf245ccfd5eec 244 Pfam PF00106 short chain dehydrogenase 4 176 2.1E-14 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS24380 8e5ebaf39953fc08b2ddf245ccfd5eec 244 SUPERFAMILY SSF51735 2 200 8.65E-35 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS11345 1c26c85e023a873e0ce37d6083253864 252 SUPERFAMILY SSF46894 183 244 6.8E-19 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS11345 1c26c85e023a873e0ce37d6083253864 252 Pfam PF00196 Bacterial regulatory proteins, luxR family 189 241 2.8E-16 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS11345 1c26c85e023a873e0ce37d6083253864 252 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 189 203 2.4E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS11345 1c26c85e023a873e0ce37d6083253864 252 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 219 231 2.4E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS11345 1c26c85e023a873e0ce37d6083253864 252 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 203 219 2.4E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS11345 1c26c85e023a873e0ce37d6083253864 252 SMART SM00421 186 243 2.4E-20 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS11345 1c26c85e023a873e0ce37d6083253864 252 Gene3D G3DSA:1.10.10.10 59 247 1.1E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS11345 1c26c85e023a873e0ce37d6083253864 252 ProSitePatterns PS00622 LuxR-type HTH domain signature. 203 230 - T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS16540 9a24889d001b49aa63349980028a6d01 350 Gene3D G3DSA:3.40.50.20 270 343 9.1E-7 T 29-03-2018 AM354_RS16540 9a24889d001b49aa63349980028a6d01 350 Gene3D G3DSA:3.40.50.20 193 263 4.4E-17 T 29-03-2018 AM354_RS16540 9a24889d001b49aa63349980028a6d01 350 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 144 9.4E-26 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AM354_RS16540 9a24889d001b49aa63349980028a6d01 350 SMART SM00829 9 343 2.3E-5 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AM354_RS16540 9a24889d001b49aa63349980028a6d01 350 SUPERFAMILY SSF51735 149 313 1.25E-43 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS16540 9a24889d001b49aa63349980028a6d01 350 SUPERFAMILY SSF50129 6 173 6.09E-50 T 29-03-2018 IPR011032 GroES-like AM354_RS16540 9a24889d001b49aa63349980028a6d01 350 Gene3D G3DSA:3.90.180.10 2 192 3.1E-53 T 29-03-2018 AM354_RS16540 9a24889d001b49aa63349980028a6d01 350 Pfam PF00107 Zinc-binding dehydrogenase 186 307 1.0E-24 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AM354_RS16540 9a24889d001b49aa63349980028a6d01 350 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 62 76 - T 29-03-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AM354_RS16540 9a24889d001b49aa63349980028a6d01 350 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 179 207 - T 29-03-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 AM354_RS03775 28b74dbd5e2e26a4302379103dbc47a2 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 7.3E-43 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS03775 28b74dbd5e2e26a4302379103dbc47a2 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 7.3E-43 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS03775 28b74dbd5e2e26a4302379103dbc47a2 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 205 225 7.3E-43 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS03775 28b74dbd5e2e26a4302379103dbc47a2 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 7.3E-43 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS03775 28b74dbd5e2e26a4302379103dbc47a2 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 7.3E-43 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS03775 28b74dbd5e2e26a4302379103dbc47a2 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 7.3E-43 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS03775 28b74dbd5e2e26a4302379103dbc47a2 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 7.4E-12 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS03775 28b74dbd5e2e26a4302379103dbc47a2 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 7.4E-12 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS03775 28b74dbd5e2e26a4302379103dbc47a2 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 7.4E-12 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS03775 28b74dbd5e2e26a4302379103dbc47a2 251 SUPERFAMILY SSF51735 4 243 4.91E-79 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS03775 28b74dbd5e2e26a4302379103dbc47a2 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM354_RS03775 28b74dbd5e2e26a4302379103dbc47a2 251 Gene3D G3DSA:3.40.50.720 45 251 5.5E-63 T 29-03-2018 AM354_RS03775 28b74dbd5e2e26a4302379103dbc47a2 251 Gene3D G3DSA:3.40.50.720 1 44 2.4E-8 T 29-03-2018 AM354_RS03775 28b74dbd5e2e26a4302379103dbc47a2 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 242 4.8E-68 T 29-03-2018 AM354_RS17650 492f689dd7764d55fc81139692758f17 92 Pfam PF00563 EAL domain 10 82 1.8E-14 T 29-03-2018 IPR001633 EAL domain AM354_RS17650 492f689dd7764d55fc81139692758f17 92 Gene3D G3DSA:3.20.20.450 5 91 1.2E-16 T 29-03-2018 IPR001633 EAL domain AM354_RS17650 492f689dd7764d55fc81139692758f17 92 SUPERFAMILY SSF141868 7 86 5.75E-18 T 29-03-2018 IPR001633 EAL domain AM354_RS19020 98d031c0b48a7afefd9350df0ae7802a 126 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 1 126 1.3E-60 T 29-03-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 AM354_RS19020 98d031c0b48a7afefd9350df0ae7802a 126 Pfam PF02261 Aspartate decarboxylase 1 114 1.6E-48 T 29-03-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 AM354_RS19020 98d031c0b48a7afefd9350df0ae7802a 126 SUPERFAMILY SSF50692 1 115 1.74E-47 T 29-03-2018 IPR009010 Aspartate decarboxylase-like domain AM354_RS19020 98d031c0b48a7afefd9350df0ae7802a 126 PIRSF PIRSF006246 1 125 5.5E-54 T 29-03-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 AM354_RS19020 98d031c0b48a7afefd9350df0ae7802a 126 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 126 71.1 T 29-03-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 AM354_RS19020 98d031c0b48a7afefd9350df0ae7802a 126 Gene3D G3DSA:2.40.40.20 1 117 1.0E-51 T 29-03-2018 AM354_RS19020 98d031c0b48a7afefd9350df0ae7802a 126 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 5 123 9.0E-63 T 29-03-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 AM354_RS21315 3f93115c5ec4d12e681af5df67044068 496 SUPERFAMILY SSF52540 208 470 3.0E-59 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS21315 3f93115c5ec4d12e681af5df67044068 496 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 384 464 1.1E-25 T 29-03-2018 IPR032859 GTPase Der, C-terminal KH-domain-like AM354_RS21315 3f93115c5ec4d12e681af5df67044068 496 Gene3D G3DSA:3.30.300.20 386 465 1.1E-26 T 29-03-2018 IPR015946 K homology domain-like, alpha/beta AM354_RS21315 3f93115c5ec4d12e681af5df67044068 496 Pfam PF01926 50S ribosome-binding GTPase 5 119 2.2E-27 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 AM354_RS21315 3f93115c5ec4d12e681af5df67044068 496 Pfam PF01926 50S ribosome-binding GTPase 211 328 7.9E-24 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 AM354_RS21315 3f93115c5ec4d12e681af5df67044068 496 PIRSF PIRSF006485 1 472 5.1E-180 T 29-03-2018 IPR016484 GTP-binding protein EngA GO:0005525 AM354_RS21315 3f93115c5ec4d12e681af5df67044068 496 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 3 464 1.3E-178 T 29-03-2018 IPR016484 GTP-binding protein EngA GO:0005525 AM354_RS21315 3f93115c5ec4d12e681af5df67044068 496 Gene3D G3DSA:1.20.120.430 66 265 1.7E-46 T 29-03-2018 AM354_RS21315 3f93115c5ec4d12e681af5df67044068 496 Gene3D G3DSA:1.20.120.430 2 65 1.7E-15 T 29-03-2018 AM354_RS21315 3f93115c5ec4d12e681af5df67044068 496 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 208 372 6.3E-21 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AM354_RS21315 3f93115c5ec4d12e681af5df67044068 496 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 156 9.7E-20 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AM354_RS21315 3f93115c5ec4d12e681af5df67044068 496 Hamap MF_00195 GTPase Der [der]. 2 467 39.143 T 29-03-2018 IPR016484 GTP-binding protein EngA GO:0005525 AM354_RS21315 3f93115c5ec4d12e681af5df67044068 496 Gene3D G3DSA:3.40.50.300 266 385 8.1E-15 T 29-03-2018 AM354_RS21315 3f93115c5ec4d12e681af5df67044068 496 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 72 90 3.3E-9 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 AM354_RS21315 3f93115c5ec4d12e681af5df67044068 496 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 3.3E-9 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 AM354_RS21315 3f93115c5ec4d12e681af5df67044068 496 SUPERFAMILY SSF52540 4 164 6.28E-44 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS06255 27a375ba6cb9d3727e225707fdcbdfc6 470 TIGRFAM TIGR01479 GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 2 469 2.0E-225 T 29-03-2018 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase GO:0000271|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 AM354_RS06255 27a375ba6cb9d3727e225707fdcbdfc6 470 Gene3D G3DSA:2.60.120.10 338 447 1.4E-29 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS06255 27a375ba6cb9d3727e225707fdcbdfc6 470 Pfam PF00483 Nucleotidyl transferase 4 285 2.6E-73 T 29-03-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AM354_RS06255 27a375ba6cb9d3727e225707fdcbdfc6 470 Gene3D G3DSA:3.90.550.10 1 337 5.3E-97 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS06255 27a375ba6cb9d3727e225707fdcbdfc6 470 SUPERFAMILY SSF53448 2 282 6.53E-74 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS06255 27a375ba6cb9d3727e225707fdcbdfc6 470 Pfam PF01050 Mannose-6-phosphate isomerase 315 465 2.5E-68 T 29-03-2018 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 AM354_RS06255 27a375ba6cb9d3727e225707fdcbdfc6 470 SUPERFAMILY SSF51182 185 469 1.62E-86 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS23300 089e5dbf2898b3444962b824b87ee149 762 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 145 735 4.1E-180 T 29-03-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM354_RS23300 089e5dbf2898b3444962b824b87ee149 762 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 141 219 2.0E-13 T 29-03-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM354_RS23300 089e5dbf2898b3444962b824b87ee149 762 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 599 621 - T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM354_RS23300 089e5dbf2898b3444962b824b87ee149 762 Pfam PF03477 ATP cone domain 6 92 6.2E-16 T 29-03-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 AM354_RS23300 089e5dbf2898b3444962b824b87ee149 762 SUPERFAMILY SSF51998 222 740 1.53E-167 T 29-03-2018 AM354_RS23300 089e5dbf2898b3444962b824b87ee149 762 PRINTS PR01183 Ribonucleotide reductase large chain signature 473 496 2.3E-39 T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM354_RS23300 089e5dbf2898b3444962b824b87ee149 762 PRINTS PR01183 Ribonucleotide reductase large chain signature 433 444 2.3E-39 T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM354_RS23300 089e5dbf2898b3444962b824b87ee149 762 PRINTS PR01183 Ribonucleotide reductase large chain signature 511 533 2.3E-39 T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM354_RS23300 089e5dbf2898b3444962b824b87ee149 762 PRINTS PR01183 Ribonucleotide reductase large chain signature 610 637 2.3E-39 T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM354_RS23300 089e5dbf2898b3444962b824b87ee149 762 PRINTS PR01183 Ribonucleotide reductase large chain signature 539 562 2.3E-39 T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM354_RS23300 089e5dbf2898b3444962b824b87ee149 762 PRINTS PR01183 Ribonucleotide reductase large chain signature 298 317 2.3E-39 T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM354_RS23300 089e5dbf2898b3444962b824b87ee149 762 Pfam PF02867 Ribonucleotide reductase, barrel domain 223 731 2.8E-117 T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM354_RS23300 089e5dbf2898b3444962b824b87ee149 762 SUPERFAMILY SSF48168 10 221 7.46E-75 T 29-03-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM354_RS23300 089e5dbf2898b3444962b824b87ee149 762 Gene3D G3DSA:3.20.70.20 122 739 1.5E-149 T 29-03-2018 AM354_RS00955 9b5040e13595e10f29b28db227769582 354 Gene3D G3DSA:1.10.3470.10 27 326 8.5E-29 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS00955 9b5040e13595e10f29b28db227769582 354 Pfam PF02653 Branched-chain amino acid transport system / permease component 43 320 2.9E-44 T 29-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AM354_RS19250 71f35805ace145ee6c82dad81ab22fbe 589 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 381 577 1.7E-11 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS19250 71f35805ace145ee6c82dad81ab22fbe 589 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 80 275 7.2E-12 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS19250 71f35805ace145ee6c82dad81ab22fbe 589 SUPERFAMILY SSF161098 5 282 3.4E-47 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS19250 71f35805ace145ee6c82dad81ab22fbe 589 SUPERFAMILY SSF161098 300 586 7.06E-38 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS19250 71f35805ace145ee6c82dad81ab22fbe 589 Gene3D G3DSA:1.10.3720.10 13 284 8.9E-35 T 29-03-2018 AM354_RS19250 71f35805ace145ee6c82dad81ab22fbe 589 Gene3D G3DSA:1.10.3720.10 302 588 3.7E-30 T 29-03-2018 AM354_RS04550 bb85972b57298e4c462a1575f5068a46 280 Gene3D G3DSA:3.20.20.70 2 278 6.2E-53 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS04550 bb85972b57298e4c462a1575f5068a46 280 SUPERFAMILY SSF51569 6 266 3.55E-53 T 29-03-2018 AM354_RS04550 bb85972b57298e4c462a1575f5068a46 280 SMART SM01133 18 250 2.4E-12 T 29-03-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AM354_RS04550 bb85972b57298e4c462a1575f5068a46 280 PIRSF PIRSF038992 1 280 4.9E-64 T 29-03-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AM354_RS04550 bb85972b57298e4c462a1575f5068a46 280 Pfam PF01791 DeoC/LacD family aldolase 19 250 3.5E-40 T 29-03-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AM354_RS12200 e75af425895836e293d3b9273aa48cd1 247 Gene3D G3DSA:3.30.540.10 1 149 2.3E-39 T 29-03-2018 AM354_RS12200 e75af425895836e293d3b9273aa48cd1 247 Gene3D G3DSA:3.40.190.80 150 246 1.2E-33 T 29-03-2018 AM354_RS12200 e75af425895836e293d3b9273aa48cd1 247 TIGRFAM TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase 2 245 1.6E-100 T 29-03-2018 IPR006240 3(2),5 -bisphosphate nucleotidase, bacterial GO:0000287|GO:0016020 KEGG: 00920+3.1.3.7 AM354_RS12200 e75af425895836e293d3b9273aa48cd1 247 Pfam PF00459 Inositol monophosphatase family 7 234 3.8E-47 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AM354_RS12200 e75af425895836e293d3b9273aa48cd1 247 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 81 94 - T 29-03-2018 IPR020583 Inositol monophosphatase, metal-binding site AM354_RS12200 e75af425895836e293d3b9273aa48cd1 247 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 205 219 - T 29-03-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 AM354_RS12200 e75af425895836e293d3b9273aa48cd1 247 SUPERFAMILY SSF56655 2 243 5.5E-73 T 29-03-2018 AM354_RS12875 0e89c91311955c5e1c16265cfd8cc072 233 SUPERFAMILY SSF52343 100 231 1.31E-34 T 29-03-2018 AM354_RS12875 0e89c91311955c5e1c16265cfd8cc072 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 31 43 2.4E-13 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AM354_RS12875 0e89c91311955c5e1c16265cfd8cc072 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 47 54 2.4E-13 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AM354_RS12875 0e89c91311955c5e1c16265cfd8cc072 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 91 100 2.4E-13 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AM354_RS12875 0e89c91311955c5e1c16265cfd8cc072 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 132 141 2.4E-13 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AM354_RS12875 0e89c91311955c5e1c16265cfd8cc072 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 107 126 2.4E-13 T 29-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AM354_RS12875 0e89c91311955c5e1c16265cfd8cc072 233 Pfam PF00175 Oxidoreductase NAD-binding domain 108 211 2.5E-21 T 29-03-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AM354_RS12875 0e89c91311955c5e1c16265cfd8cc072 233 Gene3D G3DSA:2.40.30.10 2 98 1.0E-17 T 29-03-2018 AM354_RS12875 0e89c91311955c5e1c16265cfd8cc072 233 Gene3D G3DSA:3.40.50.80 99 233 2.7E-23 T 29-03-2018 AM354_RS12875 0e89c91311955c5e1c16265cfd8cc072 233 SUPERFAMILY SSF63380 3 97 3.94E-22 T 29-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AM354_RS12875 0e89c91311955c5e1c16265cfd8cc072 233 Pfam PF00970 Oxidoreductase FAD-binding domain 6 95 3.4E-5 T 29-03-2018 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 AM354_RS25695 fda21b268be7a40525b269875480e585 301 Gene3D G3DSA:3.90.550.10 1 284 2.5E-27 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS25695 fda21b268be7a40525b269875480e585 301 SUPERFAMILY SSF53448 3 193 6.14E-31 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS25695 fda21b268be7a40525b269875480e585 301 Pfam PF00535 Glycosyl transferase family 2 4 150 2.5E-20 T 29-03-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AM354_RS08485 d8fe3c8f586b4a75d52b58745af2b655 354 SUPERFAMILY SSF51430 10 323 5.24E-98 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS08485 d8fe3c8f586b4a75d52b58745af2b655 354 Pfam PF00248 Aldo/keto reductase family 22 323 9.1E-77 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS08485 d8fe3c8f586b4a75d52b58745af2b655 354 Gene3D G3DSA:3.20.20.100 10 327 1.9E-92 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS22235 9710b7e623725785c13a7860d84979c7 708 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 33 431 1.0E-93 T 29-03-2018 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 AM354_RS22235 9710b7e623725785c13a7860d84979c7 708 Gene3D G3DSA:2.130.10.120 102 424 5.9E-54 T 29-03-2018 AM354_RS22235 9710b7e623725785c13a7860d84979c7 708 Pfam PF00326 Prolyl oligopeptidase family 488 700 3.5E-65 T 29-03-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 AM354_RS22235 9710b7e623725785c13a7860d84979c7 708 Gene3D G3DSA:3.40.50.1820 425 692 6.3E-29 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS22235 9710b7e623725785c13a7860d84979c7 708 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 557 577 3.4E-50 T 29-03-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AM354_RS22235 9710b7e623725785c13a7860d84979c7 708 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 527 546 3.4E-50 T 29-03-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AM354_RS22235 9710b7e623725785c13a7860d84979c7 708 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 499 523 3.4E-50 T 29-03-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AM354_RS22235 9710b7e623725785c13a7860d84979c7 708 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 633 655 3.4E-50 T 29-03-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AM354_RS22235 9710b7e623725785c13a7860d84979c7 708 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 473 491 3.4E-50 T 29-03-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AM354_RS22235 9710b7e623725785c13a7860d84979c7 708 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 615 630 3.4E-50 T 29-03-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AM354_RS22235 9710b7e623725785c13a7860d84979c7 708 SUPERFAMILY SSF53474 443 681 4.55E-45 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS22235 9710b7e623725785c13a7860d84979c7 708 SUPERFAMILY SSF50993 29 434 1.54E-86 T 29-03-2018 AM354_RS22235 9710b7e623725785c13a7860d84979c7 708 ProSitePatterns PS00708 Prolyl endopeptidase family serine active site. 534 564 - T 29-03-2018 IPR002471 Peptidase S9, serine active site GO:0004252|GO:0006508 AM354_RS13585 95dada157632112b97cc376d2ea5ba57 206 SUPERFAMILY SSF46785 4 79 4.89E-10 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS13585 95dada157632112b97cc376d2ea5ba57 206 SUPERFAMILY SSF81301 95 185 1.34E-14 T 29-03-2018 AM354_RS13585 95dada157632112b97cc376d2ea5ba57 206 Gene3D G3DSA:1.10.10.10 2 97 2.8E-10 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS13585 95dada157632112b97cc376d2ea5ba57 206 Pfam PF01909 Nucleotidyltransferase domain 106 135 2.2E-6 T 29-03-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 AM354_RS13585 95dada157632112b97cc376d2ea5ba57 206 Gene3D G3DSA:3.30.460.10 98 184 1.4E-13 T 29-03-2018 AM354_RS14570 e4176b163f1b3094facbcbfaf5d61d68 444 SUPERFAMILY SSF52540 3 442 6.88E-96 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS14570 e4176b163f1b3094facbcbfaf5d61d68 444 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 53 135 3.4E-7 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AM354_RS14570 e4176b163f1b3094facbcbfaf5d61d68 444 SMART SM01086 336 435 1.0E-23 T 29-03-2018 IPR019489 Clp ATPase, C-terminal AM354_RS14570 e4176b163f1b3094facbcbfaf5d61d68 444 Gene3D G3DSA:1.10.8.10 122 200 1.0E-29 T 29-03-2018 AM354_RS14570 e4176b163f1b3094facbcbfaf5d61d68 444 Gene3D G3DSA:1.10.8.10 201 243 3.3E-17 T 29-03-2018 AM354_RS14570 e4176b163f1b3094facbcbfaf5d61d68 444 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 1 444 43.595 T 29-03-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 AM354_RS14570 e4176b163f1b3094facbcbfaf5d61d68 444 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 4 444 4.5E-231 T 29-03-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 AM354_RS14570 e4176b163f1b3094facbcbfaf5d61d68 444 Gene3D G3DSA:1.10.8.60 336 432 1.8E-30 T 29-03-2018 AM354_RS14570 e4176b163f1b3094facbcbfaf5d61d68 444 Gene3D G3DSA:3.40.50.300 46 121 4.2E-5 T 29-03-2018 AM354_RS14570 e4176b163f1b3094facbcbfaf5d61d68 444 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 336 406 2.6E-6 T 29-03-2018 IPR019489 Clp ATPase, C-terminal AM354_RS14570 e4176b163f1b3094facbcbfaf5d61d68 444 SMART SM00382 49 333 2.1E-13 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS14570 e4176b163f1b3094facbcbfaf5d61d68 444 Pfam PF07724 AAA domain (Cdc48 subfamily) 188 330 1.9E-41 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AM354_RS06265 55356f6fcdf69b67045243460b9a9402 457 SUPERFAMILY SSF53738 3 175 5.49E-40 T 29-03-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS06265 55356f6fcdf69b67045243460b9a9402 457 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 377 452 7.5E-9 T 29-03-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS06265 55356f6fcdf69b67045243460b9a9402 457 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 91 105 5.7E-30 T 29-03-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS06265 55356f6fcdf69b67045243460b9a9402 457 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 208 221 5.7E-30 T 29-03-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS06265 55356f6fcdf69b67045243460b9a9402 457 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 237 252 5.7E-30 T 29-03-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS06265 55356f6fcdf69b67045243460b9a9402 457 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 169 188 5.7E-30 T 29-03-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS06265 55356f6fcdf69b67045243460b9a9402 457 Gene3D G3DSA:3.40.120.10 1 158 2.6E-39 T 29-03-2018 AM354_RS06265 55356f6fcdf69b67045243460b9a9402 457 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 262 372 1.2E-25 T 29-03-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS06265 55356f6fcdf69b67045243460b9a9402 457 Gene3D G3DSA:3.40.120.10 267 376 1.3E-27 T 29-03-2018 AM354_RS06265 55356f6fcdf69b67045243460b9a9402 457 SUPERFAMILY SSF53738 262 367 2.71E-32 T 29-03-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS06265 55356f6fcdf69b67045243460b9a9402 457 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 7 135 3.0E-32 T 29-03-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS06265 55356f6fcdf69b67045243460b9a9402 457 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 92 101 - T 29-03-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS06265 55356f6fcdf69b67045243460b9a9402 457 SUPERFAMILY SSF55957 372 455 2.27E-19 T 29-03-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS06265 55356f6fcdf69b67045243460b9a9402 457 Gene3D G3DSA:3.30.310.50 377 457 4.8E-15 T 29-03-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS06265 55356f6fcdf69b67045243460b9a9402 457 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 153 257 6.2E-24 T 29-03-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS06265 55356f6fcdf69b67045243460b9a9402 457 SUPERFAMILY SSF53738 152 260 3.57E-28 T 29-03-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM354_RS06265 55356f6fcdf69b67045243460b9a9402 457 Gene3D G3DSA:3.40.120.10 159 266 5.8E-32 T 29-03-2018 AM354_RS07340 4c6d786332c47f19d7325d37294b0e1f 113 Pfam PF01844 HNH endonuclease 27 75 9.5E-12 T 29-03-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 AM354_RS07340 4c6d786332c47f19d7325d37294b0e1f 113 SMART SM00507 15 70 1.4E-5 T 29-03-2018 IPR003615 HNH nuclease AM354_RS07340 4c6d786332c47f19d7325d37294b0e1f 113 Gene3D G3DSA:3.40.1800.10 6 86 5.2E-8 T 29-03-2018 AM354_RS09700 c3422c65ecce35226eaea5ba9941bf85 253 Pfam PF02627 Carboxymuconolactone decarboxylase family 166 247 2.1E-9 T 29-03-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AM354_RS09700 c3422c65ecce35226eaea5ba9941bf85 253 SUPERFAMILY SSF69118 32 240 3.18E-38 T 29-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AM354_RS09700 c3422c65ecce35226eaea5ba9941bf85 253 Gene3D G3DSA:1.20.1290.10 10 253 3.4E-35 T 29-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AM354_RS11640 6bf0f59177576e5d3db700402676b1a1 249 SUPERFAMILY SSF51569 13 228 9.73E-59 T 29-03-2018 AM354_RS11640 6bf0f59177576e5d3db700402676b1a1 249 PIRSF PIRSF001357 13 240 1.6E-63 T 29-03-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AM354_RS11640 6bf0f59177576e5d3db700402676b1a1 249 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 20 228 5.4E-54 T 29-03-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AM354_RS11640 6bf0f59177576e5d3db700402676b1a1 249 Pfam PF01791 DeoC/LacD family aldolase 91 207 9.9E-7 T 29-03-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AM354_RS11640 6bf0f59177576e5d3db700402676b1a1 249 Hamap MF_00114 Deoxyribose-phosphate aldolase [deoC]. 18 235 25.074 T 29-03-2018 IPR028581 Deoxyribose-phosphate aldolase type I GO:0004139 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180 AM354_RS11640 6bf0f59177576e5d3db700402676b1a1 249 Gene3D G3DSA:3.20.20.70 1 235 3.3E-66 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS11640 6bf0f59177576e5d3db700402676b1a1 249 SMART SM01133 19 231 6.3E-57 T 29-03-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AM354_RS22845 ae4cb5215ba5a2a7ec59f4aea420953e 415 Pfam PF07687 Peptidase dimerisation domain 209 309 1.4E-9 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain AM354_RS22845 ae4cb5215ba5a2a7ec59f4aea420953e 415 SUPERFAMILY SSF55031 212 322 5.41E-33 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain AM354_RS22845 ae4cb5215ba5a2a7ec59f4aea420953e 415 SUPERFAMILY SSF53187 7 213 1.21E-71 T 29-03-2018 AM354_RS22845 ae4cb5215ba5a2a7ec59f4aea420953e 415 SUPERFAMILY SSF53187 325 406 1.21E-71 T 29-03-2018 AM354_RS22845 ae4cb5215ba5a2a7ec59f4aea420953e 415 TIGRFAM TIGR01882 peptidase-T: peptidase T 7 404 6.8E-98 T 29-03-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 AM354_RS22845 ae4cb5215ba5a2a7ec59f4aea420953e 415 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 142 179 - T 29-03-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 AM354_RS22845 ae4cb5215ba5a2a7ec59f4aea420953e 415 PIRSF PIRSF037215 5 411 5.7E-149 T 29-03-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 AM354_RS22845 ae4cb5215ba5a2a7ec59f4aea420953e 415 Gene3D G3DSA:3.40.630.10 2 415 3.0E-52 T 29-03-2018 AM354_RS22845 ae4cb5215ba5a2a7ec59f4aea420953e 415 Pfam PF01546 Peptidase family M20/M25/M40 143 402 9.0E-10 T 29-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AM354_RS21690 672d96242bb76232d1e08dc149572e78 226 Pfam PF08242 Methyltransferase domain 52 145 4.5E-10 T 29-03-2018 IPR013217 Methyltransferase type 12 AM354_RS21690 672d96242bb76232d1e08dc149572e78 226 SUPERFAMILY SSF53335 10 209 3.8E-25 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS21690 672d96242bb76232d1e08dc149572e78 226 Gene3D G3DSA:3.40.50.150 1 215 3.7E-21 T 29-03-2018 AM354_RS13695 e8d0e1d0362f1694f5fd3c78141dd0e6 120 Pfam PF10928 Protein of unknown function (DUF2810) 66 118 2.1E-32 T 29-03-2018 IPR021230 Protein of unknown function DUF2810 AM354_RS13695 e8d0e1d0362f1694f5fd3c78141dd0e6 120 Gene3D G3DSA:1.20.58.300 3 97 7.6E-4 T 29-03-2018 AM354_RS20545 763caaea568e04e430dd97d640fbb136 126 SUPERFAMILY SSF54427 2 123 2.59E-36 T 29-03-2018 IPR032710 NTF2-like domain AM354_RS20545 763caaea568e04e430dd97d640fbb136 126 PIRSF PIRSF029394 1 126 2.2E-46 T 29-03-2018 IPR016918 Uncharacterised conserved protein UCP029394 AM354_RS20545 763caaea568e04e430dd97d640fbb136 126 Gene3D G3DSA:3.10.450.50 3 123 7.1E-32 T 29-03-2018 AM354_RS20545 763caaea568e04e430dd97d640fbb136 126 Pfam PF14534 Domain of unknown function (DUF4440) 23 117 1.8E-6 T 29-03-2018 IPR027843 Domain of unknown function DUF4440 AM354_RS24630 5322959c0290a3b0df55c3a04db23917 265 Pfam PF07859 alpha/beta hydrolase fold 64 170 1.9E-8 T 29-03-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 AM354_RS24630 5322959c0290a3b0df55c3a04db23917 265 SUPERFAMILY SSF53474 32 256 1.71E-42 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS24630 5322959c0290a3b0df55c3a04db23917 265 Gene3D G3DSA:3.40.50.1820 23 259 2.3E-28 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS18020 0f824f0cc4d2ea55007e62f5fb64dce7 403 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 7 391 1.0E-109 T 29-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AM354_RS18020 0f824f0cc4d2ea55007e62f5fb64dce7 403 SUPERFAMILY SSF53383 21 393 7.26E-88 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS18020 0f824f0cc4d2ea55007e62f5fb64dce7 403 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 202 216 - T 29-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AM354_RS18020 0f824f0cc4d2ea55007e62f5fb64dce7 403 Gene3D G3DSA:3.90.1150.10 260 395 1.7E-33 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS18020 0f824f0cc4d2ea55007e62f5fb64dce7 403 TIGRFAM TIGR01324 cysta_beta_ly_B: cystathionine beta-lyase 8 394 2.3E-172 T 29-03-2018 IPR006233 Cystathionine beta-lyase, bacterial GO:0004121|GO:0005737|GO:0006520 KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8|MetaCyc: PWY-6936 AM354_RS18020 0f824f0cc4d2ea55007e62f5fb64dce7 403 Gene3D G3DSA:3.40.640.10 4 259 1.1E-38 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS18020 0f824f0cc4d2ea55007e62f5fb64dce7 403 PIRSF PIRSF001434 1 395 1.1E-110 T 29-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AM354_RS03445 23385b5cfd4da49ef56a257c6446cbb9 593 Pfam PF00732 GMC oxidoreductase 202 347 1.3E-8 T 29-03-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 AM354_RS03445 23385b5cfd4da49ef56a257c6446cbb9 593 SUPERFAMILY SSF51905 6 343 4.42E-50 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS03445 23385b5cfd4da49ef56a257c6446cbb9 593 SUPERFAMILY SSF51905 523 584 4.42E-50 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS03445 23385b5cfd4da49ef56a257c6446cbb9 593 SUPERFAMILY SSF54373 432 504 4.71E-8 T 29-03-2018 AM354_RS03445 23385b5cfd4da49ef56a257c6446cbb9 593 Gene3D G3DSA:3.50.50.60 2 589 7.6E-52 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS03445 23385b5cfd4da49ef56a257c6446cbb9 593 Pfam PF05199 GMC oxidoreductase 448 573 1.2E-21 T 29-03-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 AM354_RS12770 5130c1ece04a65479150b52a49c3c8f2 127 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 69 123 4.1E-17 T 29-03-2018 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 AM354_RS12770 5130c1ece04a65479150b52a49c3c8f2 127 ProSitePatterns PS01067 Protein secE/sec61-gamma signature. 71 99 - T 29-03-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AM354_RS12770 5130c1ece04a65479150b52a49c3c8f2 127 Gene3D G3DSA:1.20.5.1030 68 119 1.6E-18 T 29-03-2018 AM354_RS12770 5130c1ece04a65479150b52a49c3c8f2 127 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 70 122 3.9E-20 T 29-03-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AM354_RS12770 5130c1ece04a65479150b52a49c3c8f2 127 Hamap MF_00422 Protein translocase subunit SecE [secE]. 67 121 13.188 T 29-03-2018 IPR022943 Preprotein translocase subunit SecE Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AM354_RS12770 5130c1ece04a65479150b52a49c3c8f2 127 PRINTS PR01650 Bacterial translocase SecE signature 44 65 6.2E-39 T 29-03-2018 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 AM354_RS12770 5130c1ece04a65479150b52a49c3c8f2 127 PRINTS PR01650 Bacterial translocase SecE signature 65 85 6.2E-39 T 29-03-2018 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 AM354_RS12770 5130c1ece04a65479150b52a49c3c8f2 127 PRINTS PR01650 Bacterial translocase SecE signature 109 125 6.2E-39 T 29-03-2018 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 AM354_RS12770 5130c1ece04a65479150b52a49c3c8f2 127 PRINTS PR01650 Bacterial translocase SecE signature 89 109 6.2E-39 T 29-03-2018 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 AM354_RS02825 0ec2fea317d411f861bb4c5f9abc7595 378 Pfam PF00144 Beta-lactamase 28 375 1.3E-80 T 29-03-2018 IPR001466 Beta-lactamase-related AM354_RS02825 0ec2fea317d411f861bb4c5f9abc7595 378 SUPERFAMILY SSF56601 21 375 2.58E-97 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM354_RS02825 0ec2fea317d411f861bb4c5f9abc7595 378 Gene3D G3DSA:3.40.710.10 18 377 5.0E-74 T 29-03-2018 AM354_RS02825 0ec2fea317d411f861bb4c5f9abc7595 378 ProSitePatterns PS00336 Beta-lactamase class-C active site. 76 83 - T 29-03-2018 IPR001586 Beta-lactamase, class-C active site GO:0008800|GO:0017001|GO:0030288 KEGG: 00311+3.5.2.6 AM354_RS01570 c6e2b101c5d322d1f79450ef3fd15fed 163 Pfam PF14196 L-2-amino-thiazoline-4-carboxylic acid hydrolase 14 154 2.5E-40 T 29-03-2018 IPR026002 L-2-amino-thiazoline-4-carboxylic acid hydrolase AM354_RS01570 c6e2b101c5d322d1f79450ef3fd15fed 163 Gene3D G3DSA:3.30.1380.20 5 158 1.0E-5 T 29-03-2018 AM354_RS17155 443ad6a909a82e01c9d883e84a7e3fef 258 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 72 2.3E-23 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS17155 443ad6a909a82e01c9d883e84a7e3fef 258 Gene3D G3DSA:1.10.10.10 1 74 1.8E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS17155 443ad6a909a82e01c9d883e84a7e3fef 258 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 62 5.3E-9 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS17155 443ad6a909a82e01c9d883e84a7e3fef 258 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 32 46 5.3E-9 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS17155 443ad6a909a82e01c9d883e84a7e3fef 258 SUPERFAMILY SSF48008 94 228 2.07E-21 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM354_RS17155 443ad6a909a82e01c9d883e84a7e3fef 258 SUPERFAMILY SSF46785 2 76 1.18E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS17155 443ad6a909a82e01c9d883e84a7e3fef 258 Gene3D G3DSA:1.20.120.530 87 238 9.1E-23 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM354_RS17155 443ad6a909a82e01c9d883e84a7e3fef 258 Pfam PF07729 FCD domain 96 219 5.0E-18 T 29-03-2018 IPR011711 GntR, C-terminal AM354_RS17155 443ad6a909a82e01c9d883e84a7e3fef 258 SMART SM00895 96 220 1.2E-15 T 29-03-2018 IPR011711 GntR, C-terminal AM354_RS17155 443ad6a909a82e01c9d883e84a7e3fef 258 SMART SM00345 13 72 6.6E-25 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS04840 c3710adeed058484d485025f37de5a99 344 PIRSF PIRSF002465 2 344 3.0E-119 T 29-03-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 AM354_RS04840 c3710adeed058484d485025f37de5a99 344 SUPERFAMILY SSF53659 4 340 2.01E-98 T 29-03-2018 AM354_RS04840 c3710adeed058484d485025f37de5a99 344 Gene3D G3DSA:3.40.718.10 1 341 5.6E-112 T 29-03-2018 AM354_RS04840 c3710adeed058484d485025f37de5a99 344 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 344 138.392 T 29-03-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 AM354_RS04840 c3710adeed058484d485025f37de5a99 344 Pfam PF02504 Fatty acid synthesis protein 5 331 1.2E-113 T 29-03-2018 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 AM354_RS04840 c3710adeed058484d485025f37de5a99 344 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 6 342 1.2E-128 T 29-03-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 AM354_RS07725 bc5c4fb62e6a68d0cd7908fdf9fe6ab8 240 SMART SM00382 26 214 3.0E-10 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS07725 bc5c4fb62e6a68d0cd7908fdf9fe6ab8 240 Gene3D G3DSA:3.40.50.300 1 228 1.5E-44 T 29-03-2018 AM354_RS07725 bc5c4fb62e6a68d0cd7908fdf9fe6ab8 240 SUPERFAMILY SSF52540 2 225 9.11E-50 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS07725 bc5c4fb62e6a68d0cd7908fdf9fe6ab8 240 Pfam PF00005 ABC transporter 19 166 9.1E-23 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS07185 404675a4a92d3cf109fa8c7157babece 287 Gene3D G3DSA:1.10.3720.10 9 287 4.6E-23 T 29-03-2018 AM354_RS07185 404675a4a92d3cf109fa8c7157babece 287 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 111 271 1.6E-13 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS07185 404675a4a92d3cf109fa8c7157babece 287 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 17 282 6.6E-83 T 29-03-2018 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 AM354_RS07185 404675a4a92d3cf109fa8c7157babece 287 SUPERFAMILY SSF161098 89 273 1.23E-30 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS01310 cdc8450327de9d0662bcef0b0584eec0 312 PIRSF PIRSF004976 2 270 2.3E-74 T 29-03-2018 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type GO:0008033 Reactome: R-HSA-6782315 AM354_RS01310 cdc8450327de9d0662bcef0b0584eec0 312 SUPERFAMILY SSF52402 17 236 1.52E-53 T 29-03-2018 AM354_RS01310 cdc8450327de9d0662bcef0b0584eec0 312 Hamap MF_01850 tRNA 2-thiocytidine biosynthesis protein TtcA [ttcA]. 10 271 57.36 T 29-03-2018 IPR012089 2-thiocytidine tRNA biosynthesis protein, TtcA GO:0008033 AM354_RS01310 cdc8450327de9d0662bcef0b0584eec0 312 Pfam PF01171 PP-loop family 42 200 2.8E-12 T 29-03-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 AM354_RS01310 cdc8450327de9d0662bcef0b0584eec0 312 Gene3D G3DSA:3.40.50.620 7 242 1.3E-37 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS07325 fe4d0056727b633c783a544c9f2a8290 516 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 288 453 1.4E-17 T 29-03-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AM354_RS07325 fe4d0056727b633c783a544c9f2a8290 516 PIRSF PIRSF000538 1 505 7.3E-114 T 29-03-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AM354_RS07325 fe4d0056727b633c783a544c9f2a8290 516 SUPERFAMILY SSF53067 1 248 1.35E-56 T 29-03-2018 AM354_RS07325 fe4d0056727b633c783a544c9f2a8290 516 Gene3D G3DSA:3.30.420.40 244 509 1.9E-41 T 29-03-2018 AM354_RS07325 fe4d0056727b633c783a544c9f2a8290 516 SUPERFAMILY SSF53067 248 497 5.18E-48 T 29-03-2018 AM354_RS07325 fe4d0056727b633c783a544c9f2a8290 516 Hamap MF_02053 Autoinducer-2 kinase [lsrK]. 1 516 78.345 T 29-03-2018 IPR033676 Autoinducer-2 kinase GO:0009372|GO:0071518 AM354_RS07325 fe4d0056727b633c783a544c9f2a8290 516 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 2 246 3.6E-50 T 29-03-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AM354_RS07325 fe4d0056727b633c783a544c9f2a8290 516 Gene3D G3DSA:3.30.420.40 1 243 4.5E-61 T 29-03-2018 AM354_RS00330 9bcad63aa6648f61049c89df2a3451a5 618 SUPERFAMILY SSF52096 468 530 4.03E-40 T 29-03-2018 IPR029045 ClpP/crotonase-like domain AM354_RS00330 9bcad63aa6648f61049c89df2a3451a5 618 SUPERFAMILY SSF52096 322 440 4.03E-40 T 29-03-2018 IPR029045 ClpP/crotonase-like domain AM354_RS00330 9bcad63aa6648f61049c89df2a3451a5 618 PIRSF PIRSF001217 8 618 1.2E-216 T 29-03-2018 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 AM354_RS00330 9bcad63aa6648f61049c89df2a3451a5 618 TIGRFAM TIGR00705 SppA_67K: signal peptide peptidase SppA, 67K type 16 609 7.6E-229 T 29-03-2018 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 AM354_RS00330 9bcad63aa6648f61049c89df2a3451a5 618 Gene3D G3DSA:3.40.1750.10 189 290 1.4E-21 T 29-03-2018 AM354_RS00330 9bcad63aa6648f61049c89df2a3451a5 618 Pfam PF01343 Peptidase family S49 393 542 1.5E-50 T 29-03-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 AM354_RS00330 9bcad63aa6648f61049c89df2a3451a5 618 Pfam PF01343 Peptidase family S49 141 291 2.0E-35 T 29-03-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 AM354_RS00330 9bcad63aa6648f61049c89df2a3451a5 618 SUPERFAMILY SSF52096 35 181 1.33E-26 T 29-03-2018 IPR029045 ClpP/crotonase-like domain AM354_RS00330 9bcad63aa6648f61049c89df2a3451a5 618 SUPERFAMILY SSF52096 212 287 1.33E-26 T 29-03-2018 IPR029045 ClpP/crotonase-like domain AM354_RS00330 9bcad63aa6648f61049c89df2a3451a5 618 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 327 541 7.9E-54 T 29-03-2018 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 AM354_RS00330 9bcad63aa6648f61049c89df2a3451a5 618 Gene3D G3DSA:3.90.226.10 319 612 3.1E-49 T 29-03-2018 AM354_RS04620 afd44bf88c959b16f508885e524f5256 76 ProDom PD057609 DNA POLYMERASE THETA SUBUNIT TRANSFERASE III NUCLEOTIDYLTRANSFERASE III DNA-DIRECTED REPLICATION 4 76 2.0E-28 T 29-03-2018 IPR009052 DNA polymerase III-theta, bacterial GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS04620 afd44bf88c959b16f508885e524f5256 76 Gene3D G3DSA:1.20.58.250 3 65 4.4E-33 T 29-03-2018 IPR009052 DNA polymerase III-theta, bacterial GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS04620 afd44bf88c959b16f508885e524f5256 76 Pfam PF06440 DNA polymerase III, theta subunit 3 71 3.2E-40 T 29-03-2018 IPR009052 DNA polymerase III-theta, bacterial GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS04620 afd44bf88c959b16f508885e524f5256 76 SUPERFAMILY SSF46575 2 75 5.1E-36 T 29-03-2018 AM354_RS12880 b92b5078600529c0e3fb27a017bc95cb 498 SUPERFAMILY SSF50475 6 325 2.51E-129 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 AM354_RS12880 b92b5078600529c0e3fb27a017bc95cb 498 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 14 434 2.3E-174 T 29-03-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 AM354_RS12880 b92b5078600529c0e3fb27a017bc95cb 498 Gene3D G3DSA:3.40.1670.10 326 462 7.7E-52 T 29-03-2018 AM354_RS12880 b92b5078600529c0e3fb27a017bc95cb 498 Gene3D G3DSA:1.20.5.570 463 490 5.2E-18 T 29-03-2018 AM354_RS12880 b92b5078600529c0e3fb27a017bc95cb 498 Hamap MF_01636 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [ubiD]. 4 490 74.674 T 29-03-2018 IPR023677 UbiD decarboxylyase, bacteria GO:0005886|GO:0006744|GO:0008694 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 AM354_RS12880 b92b5078600529c0e3fb27a017bc95cb 498 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 9 458 5.4E-185 T 29-03-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 AM354_RS12880 b92b5078600529c0e3fb27a017bc95cb 498 SUPERFAMILY SSF143968 326 489 1.27E-67 T 29-03-2018 AM354_RS23140 2ae7154e70ae8cc488e65d1281af08d8 183 Gene3D G3DSA:3.40.30.10 101 183 1.8E-13 T 29-03-2018 AM354_RS23140 2ae7154e70ae8cc488e65d1281af08d8 183 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 39 183 7.8E-53 T 29-03-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23140 2ae7154e70ae8cc488e65d1281af08d8 183 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 41 183 4.9E-51 T 29-03-2018 AM354_RS23140 2ae7154e70ae8cc488e65d1281af08d8 183 SUPERFAMILY SSF52833 32 182 9.84E-50 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS23140 2ae7154e70ae8cc488e65d1281af08d8 183 PIRSF PIRSF000216 15 183 1.4E-53 T 29-03-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23140 2ae7154e70ae8cc488e65d1281af08d8 183 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 140 158 - T 29-03-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS13190 f5042e6fa6e5c04d239ad3a74822070d 610 SMART SM00341 531 610 6.1E-26 T 29-03-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 AM354_RS13190 f5042e6fa6e5c04d239ad3a74822070d 610 Gene3D G3DSA:3.40.50.300 210 402 1.3E-50 T 29-03-2018 AM354_RS13190 f5042e6fa6e5c04d239ad3a74822070d 610 Gene3D G3DSA:1.10.10.10 403 526 2.2E-35 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS13190 f5042e6fa6e5c04d239ad3a74822070d 610 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 14 603 3.7E-267 T 29-03-2018 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 AM354_RS13190 f5042e6fa6e5c04d239ad3a74822070d 610 Pfam PF00570 HRDC domain 535 601 1.1E-23 T 29-03-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 AM354_RS13190 f5042e6fa6e5c04d239ad3a74822070d 610 Pfam PF09382 RQC domain 406 517 6.7E-39 T 29-03-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 AM354_RS13190 f5042e6fa6e5c04d239ad3a74822070d 610 SUPERFAMILY SSF47819 532 607 1.48E-25 T 29-03-2018 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 AM354_RS13190 f5042e6fa6e5c04d239ad3a74822070d 610 SMART SM00490 250 331 6.8E-28 T 29-03-2018 IPR001650 Helicase, C-terminal AM354_RS13190 f5042e6fa6e5c04d239ad3a74822070d 610 Gene3D G3DSA:1.10.150.80 527 610 1.1E-26 T 29-03-2018 AM354_RS13190 f5042e6fa6e5c04d239ad3a74822070d 610 SUPERFAMILY SSF52540 208 454 3.66E-65 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS13190 f5042e6fa6e5c04d239ad3a74822070d 610 SMART SM00956 411 514 5.2E-54 T 29-03-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 AM354_RS13190 f5042e6fa6e5c04d239ad3a74822070d 610 Gene3D G3DSA:3.40.50.300 7 208 4.2E-36 T 29-03-2018 AM354_RS13190 f5042e6fa6e5c04d239ad3a74822070d 610 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 15 464 5.8E-196 T 29-03-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 AM354_RS13190 f5042e6fa6e5c04d239ad3a74822070d 610 Pfam PF00271 Helicase conserved C-terminal domain 228 330 1.9E-19 T 29-03-2018 IPR001650 Helicase, C-terminal AM354_RS13190 f5042e6fa6e5c04d239ad3a74822070d 610 Pfam PF16124 RecQ zinc-binding 343 404 1.1E-15 T 29-03-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain AM354_RS13190 f5042e6fa6e5c04d239ad3a74822070d 610 Pfam PF00270 DEAD/DEAH box helicase 28 186 5.9E-20 T 29-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AM354_RS13190 f5042e6fa6e5c04d239ad3a74822070d 610 SMART SM00487 22 218 2.5E-30 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AM354_RS13190 f5042e6fa6e5c04d239ad3a74822070d 610 SUPERFAMILY SSF52540 15 198 1.27E-45 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS11375 29febdb3833d27f1c8d4c91fdbd57dc2 369 Pfam PF03576 Peptidase family S58 21 348 6.8E-107 T 29-03-2018 IPR005321 Peptidase S58, DmpA AM354_RS11375 29febdb3833d27f1c8d4c91fdbd57dc2 369 SUPERFAMILY SSF56266 4 366 2.49E-109 T 29-03-2018 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 AM354_RS11375 29febdb3833d27f1c8d4c91fdbd57dc2 369 Gene3D G3DSA:3.60.70.12 3 366 9.1E-107 T 29-03-2018 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 AM354_RS11865 42c8e234865e73271f6cc016089768bd 260 Gene3D G3DSA:3.60.15.10 1 256 1.6E-51 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS11865 42c8e234865e73271f6cc016089768bd 260 SUPERFAMILY SSF56281 1 249 7.31E-40 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS11865 42c8e234865e73271f6cc016089768bd 260 TIGRFAM TIGR03307 PhnP: phosphonate metabolism protein PhnP 1 246 3.4E-121 T 29-03-2018 IPR017693 Phosphonate metabolism protein PhnP GO:0008081|GO:0019700 KEGG: 00440+3.1.4.55|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AM354_RS11865 42c8e234865e73271f6cc016089768bd 260 Pfam PF12706 Beta-lactamase superfamily domain 61 221 8.2E-19 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS01895 70d8cf6dff3cc5342b4687cb4dc0e695 764 Gene3D G3DSA:3.40.50.740 114 329 1.0E-34 T 29-03-2018 AM354_RS01895 70d8cf6dff3cc5342b4687cb4dc0e695 764 Pfam PF00384 Molybdopterin oxidoreductase 113 478 6.6E-27 T 29-03-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS01895 70d8cf6dff3cc5342b4687cb4dc0e695 764 Gene3D G3DSA:3.40.50.740 330 607 1.1E-46 T 29-03-2018 AM354_RS01895 70d8cf6dff3cc5342b4687cb4dc0e695 764 SUPERFAMILY SSF50692 637 753 2.06E-18 T 29-03-2018 IPR009010 Aspartate decarboxylase-like domain AM354_RS01895 70d8cf6dff3cc5342b4687cb4dc0e695 764 PIRSF PIRSF000144 1 758 0.0 T 29-03-2018 AM354_RS01895 70d8cf6dff3cc5342b4687cb4dc0e695 764 SUPERFAMILY SSF53706 51 624 1.31E-147 T 29-03-2018 AM354_RS01895 70d8cf6dff3cc5342b4687cb4dc0e695 764 TIGRFAM TIGR01701 Fdhalpha-like: oxidoreductase alpha (molybdopterin) subunit 17 752 9.9E-293 T 29-03-2018 IPR010046 Oxidoreductase alpha (molybdopterin) subunit GO:0008863|GO:0030151|GO:0051539 AM354_RS01895 70d8cf6dff3cc5342b4687cb4dc0e695 764 Pfam PF01568 Molydopterin dinucleotide binding domain 641 748 1.2E-14 T 29-03-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 AM354_RS01895 70d8cf6dff3cc5342b4687cb4dc0e695 764 Gene3D G3DSA:2.40.40.20 608 753 1.9E-24 T 29-03-2018 AM354_RS24190 88ecc5af67e24eaeb0d8fcfdb26e8bf7 182 TIGRFAM TIGR03124 citrate_citX: holo-ACP synthase CitX 14 176 1.4E-54 T 29-03-2018 IPR005551 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase GO:0051191 AM354_RS24190 88ecc5af67e24eaeb0d8fcfdb26e8bf7 182 Pfam PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase 14 177 1.5E-54 T 29-03-2018 IPR005551 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase GO:0051191 AM354_RS17340 a40e87ff8145c09afcbdce38e1b0c776 386 SUPERFAMILY SSF56059 1 168 8.24E-95 T 29-03-2018 AM354_RS17340 a40e87ff8145c09afcbdce38e1b0c776 386 SUPERFAMILY SSF56059 266 382 8.24E-95 T 29-03-2018 AM354_RS17340 a40e87ff8145c09afcbdce38e1b0c776 386 Pfam PF03738 Glutathionylspermidine synthase preATP-grasp 12 384 8.9E-165 T 29-03-2018 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain AM354_RS17340 a40e87ff8145c09afcbdce38e1b0c776 386 SUPERFAMILY SSF52440 174 279 1.7E-41 T 29-03-2018 IPR016185 Pre-ATP-grasp domain AM354_RS07765 9de372cf96aa333f44699be24d6361cc 331 Hamap MF_01605 6-phosphogluconolactonase [pgl]. 1 331 55.657 T 29-03-2018 IPR022528 6-phosphogluconolactonase, YbhE-type GO:0005975|GO:0006098|GO:0017057 KEGG: 00030+3.1.1.31 AM354_RS07765 9de372cf96aa333f44699be24d6361cc 331 Gene3D G3DSA:2.130.10.10 2 331 1.6E-48 T 29-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AM354_RS07765 9de372cf96aa333f44699be24d6361cc 331 Pfam PF10282 Lactonase, 7-bladed beta-propeller 5 327 1.0E-93 T 29-03-2018 IPR019405 Lactonase, 7-bladed beta propeller AM354_RS07765 9de372cf96aa333f44699be24d6361cc 331 SUPERFAMILY SSF50974 4 290 8.11E-49 T 29-03-2018 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 AM354_RS07360 cba947c70035df174c2dbad9348cb037 150 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 4 57 6.8E-8 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM354_RS07360 cba947c70035df174c2dbad9348cb037 150 Pfam PF01799 [2Fe-2S] binding domain 71 141 1.2E-25 T 29-03-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AM354_RS07360 cba947c70035df174c2dbad9348cb037 150 Gene3D G3DSA:3.10.20.30 1 72 1.6E-26 T 29-03-2018 IPR012675 Beta-grasp domain AM354_RS07360 cba947c70035df174c2dbad9348cb037 150 SUPERFAMILY SSF47741 71 147 1.44E-28 T 29-03-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AM354_RS07360 cba947c70035df174c2dbad9348cb037 150 Gene3D G3DSA:1.10.150.120 73 150 2.2E-27 T 29-03-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AM354_RS07360 cba947c70035df174c2dbad9348cb037 150 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 37 45 - T 29-03-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AM354_RS07360 cba947c70035df174c2dbad9348cb037 150 SUPERFAMILY SSF54292 2 76 3.15E-25 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM354_RS06285 fdc374036138a90a35a80c747950a368 590 Gene3D G3DSA:3.40.50.300 317 572 3.4E-61 T 29-03-2018 AM354_RS06285 fdc374036138a90a35a80c747950a368 590 SUPERFAMILY SSF52540 322 555 5.01E-64 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS06285 fdc374036138a90a35a80c747950a368 590 TIGRFAM TIGR01842 type_I_sec_PrtD: type I secretion system ATPase 18 557 3.6E-237 T 29-03-2018 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 AM354_RS06285 fdc374036138a90a35a80c747950a368 590 SUPERFAMILY SSF90123 12 315 6.93E-46 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM354_RS06285 fdc374036138a90a35a80c747950a368 590 ProSitePatterns PS00211 ABC transporters family signature. 468 482 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS06285 fdc374036138a90a35a80c747950a368 590 Gene3D G3DSA:1.20.1560.10 6 316 6.8E-25 T 29-03-2018 AM354_RS06285 fdc374036138a90a35a80c747950a368 590 Pfam PF00664 ABC transporter transmembrane region 24 280 1.0E-14 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM354_RS06285 fdc374036138a90a35a80c747950a368 590 SMART SM00382 357 543 2.9E-13 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS06285 fdc374036138a90a35a80c747950a368 590 Pfam PF00005 ABC transporter 348 495 8.6E-29 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS14940 910bd3ae850cc6feeb1ffa1a8ca1bd3e 328 Gene3D G3DSA:3.40.50.2300 145 300 1.2E-14 T 29-03-2018 AM354_RS14940 910bd3ae850cc6feeb1ffa1a8ca1bd3e 328 Pfam PF13407 Periplasmic binding protein domain 31 288 3.1E-53 T 29-03-2018 IPR025997 Periplasmic binding protein AM354_RS14940 910bd3ae850cc6feeb1ffa1a8ca1bd3e 328 SUPERFAMILY SSF53822 28 326 5.65E-64 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS14940 910bd3ae850cc6feeb1ffa1a8ca1bd3e 328 Gene3D G3DSA:3.40.50.2300 27 144 2.7E-19 T 29-03-2018 AM354_RS15990 0b75d8b8281805a9782d752444921da0 64 Pfam PF04324 BFD-like [2Fe-2S] binding domain 2 50 5.0E-15 T 29-03-2018 IPR007419 BFD-like [2Fe-2S]-binding domain AM354_RS14895 a9b93caa8c7314cee2988c1481077f63 280 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 2 266 41.985 T 29-03-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 AM354_RS14895 a9b93caa8c7314cee2988c1481077f63 280 SUPERFAMILY SSF53335 9 279 6.22E-100 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS14895 a9b93caa8c7314cee2988c1481077f63 280 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 241 247 - T 29-03-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AM354_RS14895 a9b93caa8c7314cee2988c1481077f63 280 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 33 278 8.8E-112 T 29-03-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 AM354_RS14895 a9b93caa8c7314cee2988c1481077f63 280 Gene3D G3DSA:3.40.50.150 1 280 6.6E-94 T 29-03-2018 AM354_RS20655 900b14221d858c3bfe7600d250ce9b64 470 SUPERFAMILY SSF55604 9 77 1.44E-15 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM354_RS20655 900b14221d858c3bfe7600d250ce9b64 470 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 19 36 - T 29-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AM354_RS20655 900b14221d858c3bfe7600d250ce9b64 470 Gene3D G3DSA:3.30.1360.60 6 80 5.7E-21 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM354_RS20655 900b14221d858c3bfe7600d250ce9b64 470 Pfam PF02378 Phosphotransferase system, EIIC 118 399 2.3E-20 T 29-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AM354_RS20655 900b14221d858c3bfe7600d250ce9b64 470 Pfam PF00367 phosphotransferase system, EIIB 9 41 1.1E-11 T 29-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AM354_RS06555 1c0aa10b9eedf1f38c235994657a96a7 165 SUPERFAMILY SSF52540 8 149 3.45E-15 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS06555 1c0aa10b9eedf1f38c235994657a96a7 165 Gene3D G3DSA:3.40.50.300 7 156 6.8E-15 T 29-03-2018 AM354_RS06555 1c0aa10b9eedf1f38c235994657a96a7 165 Pfam PF13671 AAA domain 8 150 1.4E-28 T 29-03-2018 AM354_RS14625 c02a0ebe5157b023c755085c7745c660 383 SUPERFAMILY SSF55031 181 296 4.93E-22 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain AM354_RS14625 c02a0ebe5157b023c755085c7745c660 383 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 110 147 - T 29-03-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 AM354_RS14625 c02a0ebe5157b023c755085c7745c660 383 Gene3D G3DSA:3.30.70.360 184 299 3.8E-22 T 29-03-2018 AM354_RS14625 c02a0ebe5157b023c755085c7745c660 383 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 75 84 - T 29-03-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 AM354_RS14625 c02a0ebe5157b023c755085c7745c660 383 SUPERFAMILY SSF53187 4 180 7.14E-58 T 29-03-2018 AM354_RS14625 c02a0ebe5157b023c755085c7745c660 383 SUPERFAMILY SSF53187 305 381 7.14E-58 T 29-03-2018 AM354_RS14625 c02a0ebe5157b023c755085c7745c660 383 Pfam PF01546 Peptidase family M20/M25/M40 76 378 2.1E-35 T 29-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AM354_RS14625 c02a0ebe5157b023c755085c7745c660 383 Pfam PF07687 Peptidase dimerisation domain 178 287 8.9E-25 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain AM354_RS14625 c02a0ebe5157b023c755085c7745c660 383 Hamap MF_01108 Acetylornithine deacetylase [argE]. 3 382 65.068 T 29-03-2018 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 AM354_RS14625 c02a0ebe5157b023c755085c7745c660 383 Gene3D G3DSA:3.40.630.10 1 183 2.4E-28 T 29-03-2018 AM354_RS14625 c02a0ebe5157b023c755085c7745c660 383 TIGRFAM TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE) 10 377 1.9E-154 T 29-03-2018 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 AM354_RS11855 2ee77a50ee88270ede664adcab766cbd 189 SMART SM00072 1 181 2.0E-6 T 29-03-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit AM354_RS11855 2ee77a50ee88270ede664adcab766cbd 189 Hamap MF_00836 Ribose 1,5-bisphosphate phosphokinase PhnN [phnN]. 1 178 33.927 T 29-03-2018 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN GO:0006015|GO:0033863 KEGG: 00030+2.7.4.23|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AM354_RS11855 2ee77a50ee88270ede664adcab766cbd 189 SUPERFAMILY SSF52540 1 180 6.22E-34 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS11855 2ee77a50ee88270ede664adcab766cbd 189 Gene3D G3DSA:3.40.50.300 3 189 4.6E-26 T 29-03-2018 AM354_RS11855 2ee77a50ee88270ede664adcab766cbd 189 TIGRFAM TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN 3 177 1.3E-63 T 29-03-2018 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN GO:0006015|GO:0033863 KEGG: 00030+2.7.4.23|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AM354_RS04085 5143ed2aa2579e1b8e56d88e3fe90979 65 Gene3D G3DSA:1.10.260.40 1 61 2.0E-19 T 29-03-2018 AM354_RS04085 5143ed2aa2579e1b8e56d88e3fe90979 65 SUPERFAMILY SSF47413 1 58 2.5E-15 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS04085 5143ed2aa2579e1b8e56d88e3fe90979 65 Pfam PF14549 DNA-binding transcriptional regulator Cro 3 58 1.5E-18 T 29-03-2018 AM354_RS05855 58b7fc34de9cc34d483b3129219a1c96 479 Gene3D G3DSA:3.40.50.720 1 304 6.4E-26 T 29-03-2018 AM354_RS05855 58b7fc34de9cc34d483b3129219a1c96 479 Pfam PF13460 NAD(P)H-binding 10 151 1.5E-14 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS05855 58b7fc34de9cc34d483b3129219a1c96 479 Gene3D G3DSA:3.30.530.20 325 479 1.0E-4 T 29-03-2018 IPR023393 START-like domain AM354_RS05855 58b7fc34de9cc34d483b3129219a1c96 479 SUPERFAMILY SSF51735 1 294 8.56E-48 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS05855 58b7fc34de9cc34d483b3129219a1c96 479 Pfam PF11066 Protein of unknown function (DUF2867) 332 463 3.1E-14 T 29-03-2018 IPR021295 Protein of unknown function DUF2867 AM354_RS09020 3f4b0f2485c39f0eaeb98bb92a840e94 592 Pfam PF00664 ABC transporter transmembrane region 26 295 6.7E-40 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM354_RS09020 3f4b0f2485c39f0eaeb98bb92a840e94 592 SUPERFAMILY SSF90123 9 324 1.23E-67 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM354_RS09020 3f4b0f2485c39f0eaeb98bb92a840e94 592 SUPERFAMILY SSF52540 336 576 9.03E-78 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS09020 3f4b0f2485c39f0eaeb98bb92a840e94 592 Gene3D G3DSA:1.20.1560.10 5 329 3.0E-61 T 29-03-2018 AM354_RS09020 3f4b0f2485c39f0eaeb98bb92a840e94 592 ProSitePatterns PS00211 ABC transporters family signature. 477 491 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS09020 3f4b0f2485c39f0eaeb98bb92a840e94 592 Gene3D G3DSA:3.40.50.300 330 581 5.8E-69 T 29-03-2018 AM354_RS09020 3f4b0f2485c39f0eaeb98bb92a840e94 592 Pfam PF00005 ABC transporter 357 505 3.5E-29 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS09020 3f4b0f2485c39f0eaeb98bb92a840e94 592 SMART SM00382 366 557 1.5E-13 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS22130 3de0a111747df16ab41796b2f05e396e 1045 SUPERFAMILY SSF82866 299 497 1.14E-48 T 29-03-2018 AM354_RS22130 3de0a111747df16ab41796b2f05e396e 1045 Pfam PF00873 AcrB/AcrD/AcrF family 1 1027 0.0 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS22130 3de0a111747df16ab41796b2f05e396e 1045 SUPERFAMILY SSF82714 723 810 4.84E-24 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS22130 3de0a111747df16ab41796b2f05e396e 1045 SUPERFAMILY SSF82866 807 1031 4.45E-44 T 29-03-2018 AM354_RS22130 3de0a111747df16ab41796b2f05e396e 1045 SUPERFAMILY SSF82714 182 271 5.89E-23 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS22130 3de0a111747df16ab41796b2f05e396e 1045 SUPERFAMILY SSF82693 566 672 1.31E-27 T 29-03-2018 AM354_RS22130 3de0a111747df16ab41796b2f05e396e 1045 Gene3D G3DSA:1.20.1640.10 274 500 2.3E-45 T 29-03-2018 AM354_RS22130 3de0a111747df16ab41796b2f05e396e 1045 Gene3D G3DSA:1.20.1640.10 814 1030 5.1E-38 T 29-03-2018 AM354_RS22130 3de0a111747df16ab41796b2f05e396e 1045 Gene3D G3DSA:3.30.2090.10 180 273 3.9E-19 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS22130 3de0a111747df16ab41796b2f05e396e 1045 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1039 0.0 T 29-03-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 AM354_RS22130 3de0a111747df16ab41796b2f05e396e 1045 Gene3D G3DSA:3.30.70.1430 568 672 5.5E-23 T 29-03-2018 AM354_RS22130 3de0a111747df16ab41796b2f05e396e 1045 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 2.7E-109 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS22130 3de0a111747df16ab41796b2f05e396e 1045 PRINTS PR00702 Acriflavin resistance protein family signature 622 636 2.7E-109 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS22130 3de0a111747df16ab41796b2f05e396e 1045 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 2.7E-109 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS22130 3de0a111747df16ab41796b2f05e396e 1045 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 2.7E-109 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS22130 3de0a111747df16ab41796b2f05e396e 1045 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 2.7E-109 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS22130 3de0a111747df16ab41796b2f05e396e 1045 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 2.7E-109 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS22130 3de0a111747df16ab41796b2f05e396e 1045 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 2.7E-109 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS22130 3de0a111747df16ab41796b2f05e396e 1045 PRINTS PR00702 Acriflavin resistance protein family signature 553 570 2.7E-109 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS22130 3de0a111747df16ab41796b2f05e396e 1045 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 2.7E-109 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS22130 3de0a111747df16ab41796b2f05e396e 1045 SUPERFAMILY SSF82693 39 132 1.74E-27 T 29-03-2018 AM354_RS22130 3de0a111747df16ab41796b2f05e396e 1045 SUPERFAMILY SSF82693 137 182 3.66E-23 T 29-03-2018 AM354_RS22130 3de0a111747df16ab41796b2f05e396e 1045 SUPERFAMILY SSF82693 274 330 3.66E-23 T 29-03-2018 AM354_RS22130 3de0a111747df16ab41796b2f05e396e 1045 Gene3D G3DSA:3.30.70.1430 38 141 3.3E-28 T 29-03-2018 AM354_RS22130 3de0a111747df16ab41796b2f05e396e 1045 Gene3D G3DSA:3.30.70.1440 673 769 1.4E-21 T 29-03-2018 AM354_RS15500 72969af741b3cd2f2c278b12762fc0f0 252 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 29-03-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AM354_RS15500 72969af741b3cd2f2c278b12762fc0f0 252 SMART SM01134 72 233 3.2E-71 T 29-03-2018 AM354_RS15500 72969af741b3cd2f2c278b12762fc0f0 252 Pfam PF08220 DeoR-like helix-turn-helix domain 6 61 7.0E-24 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS15500 72969af741b3cd2f2c278b12762fc0f0 252 SUPERFAMILY SSF46785 3 73 4.05E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS15500 72969af741b3cd2f2c278b12762fc0f0 252 SUPERFAMILY SSF100950 74 233 6.98E-30 T 29-03-2018 AM354_RS15500 72969af741b3cd2f2c278b12762fc0f0 252 Gene3D G3DSA:3.40.50.1360 73 239 3.4E-40 T 29-03-2018 AM354_RS15500 72969af741b3cd2f2c278b12762fc0f0 252 Gene3D G3DSA:1.10.10.10 1 60 1.9E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS15500 72969af741b3cd2f2c278b12762fc0f0 252 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.2E-12 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS15500 72969af741b3cd2f2c278b12762fc0f0 252 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.2E-12 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS15500 72969af741b3cd2f2c278b12762fc0f0 252 SMART SM00420 6 58 4.9E-26 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS15500 72969af741b3cd2f2c278b12762fc0f0 252 Pfam PF00455 DeoR C terminal sensor domain 76 232 3.5E-54 T 29-03-2018 IPR014036 DeoR C-terminal sensor domain AM354_RS01305 32587b69aff04f13fb1ed6c28bb53a2c 132 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 123 8.6E-7 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AM354_RS01305 32587b69aff04f13fb1ed6c28bb53a2c 132 Gene3D G3DSA:3.10.180.10 6 130 1.2E-16 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS01305 32587b69aff04f13fb1ed6c28bb53a2c 132 SUPERFAMILY SSF54593 7 129 2.06E-22 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS03345 ec523148947d457687f50648ca98f869 660 PIRSF PIRSF036506 1 659 0.0 T 29-03-2018 IPR021168 Bifunctional polymyxin resistance protein, ArnA GO:0016742|GO:0055114 KEGG: 00072+1.1.1.30|KEGG: 00520+2.1.2.13+1.1.1.305|KEGG: 00650+1.1.1.30 AM354_RS03345 ec523148947d457687f50648ca98f869 660 SUPERFAMILY SSF51735 317 651 1.38E-71 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS03345 ec523148947d457687f50648ca98f869 660 SUPERFAMILY SSF50486 205 304 3.77E-23 T 29-03-2018 IPR011034 Formyl transferase, C-terminal-like GO:0003824 AM354_RS03345 ec523148947d457687f50648ca98f869 660 SUPERFAMILY SSF53328 1 202 1.7E-57 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM354_RS03345 ec523148947d457687f50648ca98f869 660 Hamap MF_01166 Bifunctional polymyxin resistance protein ArnA [arnA]. 1 660 64.816 T 29-03-2018 IPR021168 Bifunctional polymyxin resistance protein, ArnA GO:0016742|GO:0055114 KEGG: 00072+1.1.1.30|KEGG: 00520+2.1.2.13+1.1.1.305|KEGG: 00650+1.1.1.30 AM354_RS03345 ec523148947d457687f50648ca98f869 660 Gene3D G3DSA:3.10.25.10 203 305 3.4E-20 T 29-03-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM354_RS03345 ec523148947d457687f50648ca98f869 660 Gene3D G3DSA:3.40.50.720 314 658 1.4E-46 T 29-03-2018 AM354_RS03345 ec523148947d457687f50648ca98f869 660 Pfam PF02911 Formyl transferase, C-terminal domain 203 283 3.1E-17 T 29-03-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM354_RS03345 ec523148947d457687f50648ca98f869 660 Pfam PF01370 NAD dependent epimerase/dehydratase family 318 566 1.3E-42 T 29-03-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AM354_RS03345 ec523148947d457687f50648ca98f869 660 Pfam PF00551 Formyl transferase 28 175 3.5E-25 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM354_RS03345 ec523148947d457687f50648ca98f869 660 Gene3D G3DSA:3.40.50.170 1 200 2.6E-49 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM354_RS06785 28f8a414ad76dfc93bb6a7a77b0e3a8c 290 Gene3D G3DSA:3.40.190.10 91 176 3.8E-10 T 29-03-2018 AM354_RS06785 28f8a414ad76dfc93bb6a7a77b0e3a8c 290 SUPERFAMILY SSF53850 89 284 3.57E-25 T 29-03-2018 AM354_RS06785 28f8a414ad76dfc93bb6a7a77b0e3a8c 290 Gene3D G3DSA:1.10.10.10 1 80 5.2E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS06785 28f8a414ad76dfc93bb6a7a77b0e3a8c 290 Pfam PF03466 LysR substrate binding domain 88 284 4.6E-27 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS06785 28f8a414ad76dfc93bb6a7a77b0e3a8c 290 Gene3D G3DSA:3.40.190.10 177 261 1.4E-13 T 29-03-2018 AM354_RS06785 28f8a414ad76dfc93bb6a7a77b0e3a8c 290 SUPERFAMILY SSF46785 1 84 4.13E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS06785 28f8a414ad76dfc93bb6a7a77b0e3a8c 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 9.8E-10 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS06785 28f8a414ad76dfc93bb6a7a77b0e3a8c 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 9.8E-10 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS06785 28f8a414ad76dfc93bb6a7a77b0e3a8c 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 9.8E-10 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS06785 28f8a414ad76dfc93bb6a7a77b0e3a8c 290 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 2.0E-21 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS21705 d608aefb1f8ff4d6696cc3b949e2a89d 345 Pfam PF13437 HlyD family secretion protein 210 292 6.8E-14 T 29-03-2018 AM354_RS21705 d608aefb1f8ff4d6696cc3b949e2a89d 345 SUPERFAMILY SSF111369 184 293 3.14E-12 T 29-03-2018 AM354_RS21705 d608aefb1f8ff4d6696cc3b949e2a89d 345 Gene3D G3DSA:1.20.1600.10 33 343 2.0E-24 T 29-03-2018 AM354_RS21705 d608aefb1f8ff4d6696cc3b949e2a89d 345 Pfam PF13533 Biotin-lipoyl like 48 92 2.1E-12 T 29-03-2018 AM354_RS21705 d608aefb1f8ff4d6696cc3b949e2a89d 345 SUPERFAMILY SSF111369 46 113 2.09E-10 T 29-03-2018 AM354_RS00120 1258b64bc597270d859ab93ebd44e92f 122 SUPERFAMILY SSF103481 6 107 1.29E-17 T 29-03-2018 AM354_RS00120 1258b64bc597270d859ab93ebd44e92f 122 Hamap MF_01598 Spermidine export protein MdtJ [mdtJ]. 1 122 31.765 T 29-03-2018 IPR023740 Spermidine export protein MdtJ GO:0005886|GO:0015606|GO:0015848 AM354_RS00120 1258b64bc597270d859ab93ebd44e92f 122 Pfam PF00893 Small Multidrug Resistance protein 3 93 1.1E-23 T 29-03-2018 IPR000390 Small multidrug resistance protein family GO:0016021 AM354_RS23000 4eca729408e910187fcd55df5190ba72 228 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 28 219 3.0E-21 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS23000 4eca729408e910187fcd55df5190ba72 228 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 7 114 1.6E-19 T 29-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 AM354_RS23000 4eca729408e910187fcd55df5190ba72 228 Gene3D G3DSA:1.10.3720.10 2 224 2.9E-38 T 29-03-2018 AM354_RS23000 4eca729408e910187fcd55df5190ba72 228 SUPERFAMILY SSF161098 7 205 4.97E-38 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS13855 9314039fd3e075dfb9bbb6b68542e40a 804 PRINTS PR01159 DNA gyrase subunit B signature 220 242 3.8E-80 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AM354_RS13855 9314039fd3e075dfb9bbb6b68542e40a 804 PRINTS PR01159 DNA gyrase subunit B signature 374 394 3.8E-80 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AM354_RS13855 9314039fd3e075dfb9bbb6b68542e40a 804 PRINTS PR01159 DNA gyrase subunit B signature 470 479 3.8E-80 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AM354_RS13855 9314039fd3e075dfb9bbb6b68542e40a 804 PRINTS PR01159 DNA gyrase subunit B signature 312 328 3.8E-80 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AM354_RS13855 9314039fd3e075dfb9bbb6b68542e40a 804 PRINTS PR01159 DNA gyrase subunit B signature 196 209 3.8E-80 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AM354_RS13855 9314039fd3e075dfb9bbb6b68542e40a 804 PRINTS PR01159 DNA gyrase subunit B signature 757 769 3.8E-80 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AM354_RS13855 9314039fd3e075dfb9bbb6b68542e40a 804 PRINTS PR01159 DNA gyrase subunit B signature 773 789 3.8E-80 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AM354_RS13855 9314039fd3e075dfb9bbb6b68542e40a 804 PRINTS PR01159 DNA gyrase subunit B signature 5 15 3.8E-80 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AM354_RS13855 9314039fd3e075dfb9bbb6b68542e40a 804 PRINTS PR01159 DNA gyrase subunit B signature 360 374 3.8E-80 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AM354_RS13855 9314039fd3e075dfb9bbb6b68542e40a 804 PRINTS PR01159 DNA gyrase subunit B signature 181 196 3.8E-80 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AM354_RS13855 9314039fd3e075dfb9bbb6b68542e40a 804 Pfam PF00204 DNA gyrase B 221 390 8.8E-60 T 29-03-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM354_RS13855 9314039fd3e075dfb9bbb6b68542e40a 804 SUPERFAMILY SSF54211 221 392 2.09E-62 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM354_RS13855 9314039fd3e075dfb9bbb6b68542e40a 804 SMART SM00387 31 175 1.9E-30 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS13855 9314039fd3e075dfb9bbb6b68542e40a 804 Pfam PF01751 Toprim domain 419 531 1.5E-17 T 29-03-2018 IPR006171 TOPRIM domain AM354_RS13855 9314039fd3e075dfb9bbb6b68542e40a 804 ProSitePatterns PS00177 DNA topoisomerase II signature. 422 430 - T 29-03-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM354_RS13855 9314039fd3e075dfb9bbb6b68542e40a 804 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 2 804 111.519 T 29-03-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM354_RS13855 9314039fd3e075dfb9bbb6b68542e40a 804 PRINTS PR00418 DNA topoisomerase II family signature 487 503 1.4E-70 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM354_RS13855 9314039fd3e075dfb9bbb6b68542e40a 804 PRINTS PR00418 DNA topoisomerase II family signature 113 127 1.4E-70 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM354_RS13855 9314039fd3e075dfb9bbb6b68542e40a 804 PRINTS PR00418 DNA topoisomerase II family signature 505 522 1.4E-70 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM354_RS13855 9314039fd3e075dfb9bbb6b68542e40a 804 PRINTS PR00418 DNA topoisomerase II family signature 525 537 1.4E-70 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM354_RS13855 9314039fd3e075dfb9bbb6b68542e40a 804 PRINTS PR00418 DNA topoisomerase II family signature 736 752 1.4E-70 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM354_RS13855 9314039fd3e075dfb9bbb6b68542e40a 804 PRINTS PR00418 DNA topoisomerase II family signature 268 281 1.4E-70 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM354_RS13855 9314039fd3e075dfb9bbb6b68542e40a 804 PRINTS PR00418 DNA topoisomerase II family signature 35 50 1.4E-70 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM354_RS13855 9314039fd3e075dfb9bbb6b68542e40a 804 PRINTS PR00418 DNA topoisomerase II family signature 70 83 1.4E-70 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM354_RS13855 9314039fd3e075dfb9bbb6b68542e40a 804 PRINTS PR00418 DNA topoisomerase II family signature 420 434 1.4E-70 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM354_RS13855 9314039fd3e075dfb9bbb6b68542e40a 804 Gene3D G3DSA:3.40.50.670 402 801 1.4E-107 T 29-03-2018 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM354_RS13855 9314039fd3e075dfb9bbb6b68542e40a 804 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 32 172 1.1E-21 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS13855 9314039fd3e075dfb9bbb6b68542e40a 804 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 732 793 3.5E-30 T 29-03-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 AM354_RS13855 9314039fd3e075dfb9bbb6b68542e40a 804 SUPERFAMILY SSF55874 4 220 5.37E-77 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS13855 9314039fd3e075dfb9bbb6b68542e40a 804 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 5 804 0.0 T 29-03-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM354_RS13855 9314039fd3e075dfb9bbb6b68542e40a 804 Gene3D G3DSA:3.30.230.10 221 392 3.3E-65 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AM354_RS13855 9314039fd3e075dfb9bbb6b68542e40a 804 SUPERFAMILY SSF56719 730 795 4.97E-86 T 29-03-2018 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AM354_RS13855 9314039fd3e075dfb9bbb6b68542e40a 804 SUPERFAMILY SSF56719 394 560 4.97E-86 T 29-03-2018 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AM354_RS13855 9314039fd3e075dfb9bbb6b68542e40a 804 SMART SM00433 35 797 3.7E-282 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM354_RS13855 9314039fd3e075dfb9bbb6b68542e40a 804 Gene3D G3DSA:3.30.565.10 17 220 3.1E-76 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS02840 0c4a0af0a5374d55f71a4136280a6aed 539 Gene3D G3DSA:3.30.1360.60 450 524 2.9E-26 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM354_RS02840 0c4a0af0a5374d55f71a4136280a6aed 539 Pfam PF00367 phosphotransferase system, EIIB 454 485 6.6E-15 T 29-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AM354_RS02840 0c4a0af0a5374d55f71a4136280a6aed 539 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 421 510 5.2E-23 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM354_RS02840 0c4a0af0a5374d55f71a4136280a6aed 539 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 463 480 - T 29-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AM354_RS02840 0c4a0af0a5374d55f71a4136280a6aed 539 Pfam PF02378 Phosphotransferase system, EIIC 19 361 2.4E-83 T 29-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AM354_RS02840 0c4a0af0a5374d55f71a4136280a6aed 539 SUPERFAMILY SSF55604 453 523 4.71E-20 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM354_RS02840 0c4a0af0a5374d55f71a4136280a6aed 539 TIGRFAM TIGR02004 PTS-IIBC-malX: PTS system, maltose and glucose-specific IIBC component 8 523 9.6E-256 T 29-03-2018 IPR011301 PTS system, maltose/glucose-specific IIBC component GO:0008982|GO:0009401 KEGG: 00230+2.7.1.20|KEGG: 00500+2.7.1.208|MetaCyc: PWY-6619 AM354_RS10275 a9dd16096d17ec1c51091278c12ccfea 235 SUPERFAMILY SSF53448 11 230 4.77E-59 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS10275 a9dd16096d17ec1c51091278c12ccfea 235 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 12 229 2.5E-72 T 29-03-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 AM354_RS10275 a9dd16096d17ec1c51091278c12ccfea 235 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 105 112 - T 29-03-2018 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 AM354_RS10275 a9dd16096d17ec1c51091278c12ccfea 235 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 10 230 43.163 T 29-03-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 AM354_RS10275 a9dd16096d17ec1c51091278c12ccfea 235 Gene3D G3DSA:3.90.550.10 5 235 6.4E-50 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS10275 a9dd16096d17ec1c51091278c12ccfea 235 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 11 232 1.5E-81 T 29-03-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 AM354_RS09070 9d9014bfc1a3fb3d41cb960fa1cbfb30 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 2.0E-32 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM354_RS09070 9d9014bfc1a3fb3d41cb960fa1cbfb30 90 SUPERFAMILY SSF47729 1 90 4.12E-32 T 29-03-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 AM354_RS09070 9d9014bfc1a3fb3d41cb960fa1cbfb30 90 SMART SM00411 1 90 2.5E-44 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM354_RS09070 9d9014bfc1a3fb3d41cb960fa1cbfb30 90 Gene3D G3DSA:4.10.520.10 1 90 1.6E-33 T 29-03-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 AM354_RS09070 9d9014bfc1a3fb3d41cb960fa1cbfb30 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 1.6E-20 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM354_RS09070 9d9014bfc1a3fb3d41cb960fa1cbfb30 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 1.6E-20 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM354_RS09070 9d9014bfc1a3fb3d41cb960fa1cbfb30 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 1.6E-20 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM354_RS09070 9d9014bfc1a3fb3d41cb960fa1cbfb30 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 29-03-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 AM354_RS13275 02ddf32cf571b9c250137633739da1ce 374 Pfam PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase 32 362 4.5E-140 T 29-03-2018 IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX AM354_RS13275 02ddf32cf571b9c250137633739da1ce 374 Gene3D G3DSA:3.90.20.10 35 131 6.0E-5 T 29-03-2018 AM354_RS06630 1e5e090eb7fb7b9ae828343ffb8463b3 541 PIRSF PIRSF500060 12 532 5.2E-234 T 29-03-2018 IPR027283 Glutamate synthase large subunit-like protein, bacteria AM354_RS06630 1e5e090eb7fb7b9ae828343ffb8463b3 541 SUPERFAMILY SSF51395 7 503 3.87E-137 T 29-03-2018 AM354_RS06630 1e5e090eb7fb7b9ae828343ffb8463b3 541 Gene3D G3DSA:3.20.20.70 83 501 2.4E-93 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS06630 1e5e090eb7fb7b9ae828343ffb8463b3 541 Pfam PF01645 Conserved region in glutamate synthase 158 475 2.0E-83 T 29-03-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 AM354_RS06630 1e5e090eb7fb7b9ae828343ffb8463b3 541 PIRSF PIRSF006429 5 541 4.4E-163 T 29-03-2018 IPR024188 Glutamate synthase large subunit-like protein AM354_RS08185 26733bd519108a2a05455748992708fd 108 Pfam PF13982 YbfN-like lipoprotein 21 107 6.8E-47 T 29-03-2018 IPR025727 YbfN-like lipoprotein AM354_RS14825 b5854444ae15f3b9cf1260325f6242d6 255 Pfam PF02611 CDP-diacylglycerol pyrophosphatase 30 248 1.9E-87 T 29-03-2018 IPR003763 CDP-diacylglycerol pyrophosphatase GO:0008654|GO:0008715|GO:0016020 KEGG: 00564+3.6.1.26 AM354_RS14825 b5854444ae15f3b9cf1260325f6242d6 255 SUPERFAMILY SSF54197 30 248 1.36E-84 T 29-03-2018 IPR011146 HIT-like domain GO:0003824 AM354_RS14825 b5854444ae15f3b9cf1260325f6242d6 255 PIRSF PIRSF001273 2 252 8.9E-91 T 29-03-2018 IPR003763 CDP-diacylglycerol pyrophosphatase GO:0008654|GO:0008715|GO:0016020 KEGG: 00564+3.6.1.26 AM354_RS14825 b5854444ae15f3b9cf1260325f6242d6 255 Hamap MF_00319 CDP-diacylglycerol pyrophosphatase [cdh]. 3 250 41.678 T 29-03-2018 IPR003763 CDP-diacylglycerol pyrophosphatase GO:0008654|GO:0008715|GO:0016020 KEGG: 00564+3.6.1.26 AM354_RS14825 b5854444ae15f3b9cf1260325f6242d6 255 Gene3D G3DSA:3.30.428.30 28 248 3.3E-84 T 29-03-2018 AM354_RS23715 f84cd3bcc5456d82aaf0090325e3e866 185 Pfam PF07883 Cupin domain 111 178 6.6E-16 T 29-03-2018 IPR013096 Cupin 2, conserved barrel AM354_RS23715 f84cd3bcc5456d82aaf0090325e3e866 185 Pfam PF01381 Helix-turn-helix 13 66 1.8E-14 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM354_RS23715 f84cd3bcc5456d82aaf0090325e3e866 185 SUPERFAMILY SSF47413 7 71 2.03E-16 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS23715 f84cd3bcc5456d82aaf0090325e3e866 185 Gene3D G3DSA:1.10.260.40 1 67 2.9E-17 T 29-03-2018 AM354_RS23715 f84cd3bcc5456d82aaf0090325e3e866 185 SUPERFAMILY SSF51182 51 183 1.02E-29 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS23715 f84cd3bcc5456d82aaf0090325e3e866 185 Gene3D G3DSA:2.60.120.10 68 184 5.8E-18 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS23715 f84cd3bcc5456d82aaf0090325e3e866 185 SMART SM00530 11 66 4.4E-15 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM354_RS00840 bfc02cae2fe822b58f8b51563e2f08e0 193 Pfam PF00117 Glutamine amidotransferase class-I 6 186 6.8E-44 T 29-03-2018 IPR017926 Glutamine amidotransferase AM354_RS00840 bfc02cae2fe822b58f8b51563e2f08e0 193 PRINTS PR00097 Anthranilate synthase component II signature 4 18 4.4E-36 T 29-03-2018 AM354_RS00840 bfc02cae2fe822b58f8b51563e2f08e0 193 PRINTS PR00097 Anthranilate synthase component II signature 166 179 4.4E-36 T 29-03-2018 AM354_RS00840 bfc02cae2fe822b58f8b51563e2f08e0 193 PRINTS PR00097 Anthranilate synthase component II signature 124 136 4.4E-36 T 29-03-2018 AM354_RS00840 bfc02cae2fe822b58f8b51563e2f08e0 193 PRINTS PR00097 Anthranilate synthase component II signature 104 112 4.4E-36 T 29-03-2018 AM354_RS00840 bfc02cae2fe822b58f8b51563e2f08e0 193 PRINTS PR00097 Anthranilate synthase component II signature 79 90 4.4E-36 T 29-03-2018 AM354_RS00840 bfc02cae2fe822b58f8b51563e2f08e0 193 PRINTS PR00097 Anthranilate synthase component II signature 52 61 4.4E-36 T 29-03-2018 AM354_RS00840 bfc02cae2fe822b58f8b51563e2f08e0 193 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 4 186 1.1E-54 T 29-03-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain GO:0008152 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AM354_RS00840 bfc02cae2fe822b58f8b51563e2f08e0 193 PRINTS PR00096 Glutamine amidotransferase superfamily signature 79 90 2.7E-14 T 29-03-2018 AM354_RS00840 bfc02cae2fe822b58f8b51563e2f08e0 193 PRINTS PR00096 Glutamine amidotransferase superfamily signature 166 179 2.7E-14 T 29-03-2018 AM354_RS00840 bfc02cae2fe822b58f8b51563e2f08e0 193 PRINTS PR00096 Glutamine amidotransferase superfamily signature 52 61 2.7E-14 T 29-03-2018 AM354_RS00840 bfc02cae2fe822b58f8b51563e2f08e0 193 SUPERFAMILY SSF52317 3 191 3.91E-46 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS00840 bfc02cae2fe822b58f8b51563e2f08e0 193 Gene3D G3DSA:3.40.50.880 1 193 3.2E-48 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS00840 bfc02cae2fe822b58f8b51563e2f08e0 193 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 49 63 2.7E-6 T 29-03-2018 AM354_RS00840 bfc02cae2fe822b58f8b51563e2f08e0 193 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 79 95 2.7E-6 T 29-03-2018 AM354_RS06175 5fc91f49ae837223e079e107b4ecb0ba 299 Gene3D G3DSA:3.40.190.10 1 128 6.6E-36 T 29-03-2018 AM354_RS06175 5fc91f49ae837223e079e107b4ecb0ba 299 Gene3D G3DSA:3.40.190.10 129 223 6.1E-23 T 29-03-2018 AM354_RS06175 5fc91f49ae837223e079e107b4ecb0ba 299 Pfam PF01634 ATP phosphoribosyltransferase 54 219 4.5E-48 T 29-03-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 AM354_RS06175 5fc91f49ae837223e079e107b4ecb0ba 299 SUPERFAMILY SSF54913 226 298 4.34E-21 T 29-03-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta AM354_RS06175 5fc91f49ae837223e079e107b4ecb0ba 299 TIGRFAM TIGR03455 HisG_C-term: ATP phosphoribosyltransferase, C-terminal domain 201 298 1.1E-31 T 29-03-2018 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 AM354_RS06175 5fc91f49ae837223e079e107b4ecb0ba 299 Hamap MF_00079 ATP phosphoribosyltransferase [hisG]. 6 299 36.033 T 29-03-2018 IPR020621 ATP phosphoribosyltransferase HisG, long form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 AM354_RS06175 5fc91f49ae837223e079e107b4ecb0ba 299 SUPERFAMILY SSF53850 6 224 4.71E-70 T 29-03-2018 AM354_RS06175 5fc91f49ae837223e079e107b4ecb0ba 299 Gene3D G3DSA:3.30.70.120 227 298 7.7E-24 T 29-03-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal AM354_RS06175 5fc91f49ae837223e079e107b4ecb0ba 299 Pfam PF08029 HisG, C-terminal domain 223 296 1.3E-23 T 29-03-2018 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 AM354_RS06175 5fc91f49ae837223e079e107b4ecb0ba 299 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 7 197 3.0E-57 T 29-03-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 AM354_RS06175 5fc91f49ae837223e079e107b4ecb0ba 299 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 156 177 - T 29-03-2018 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17 AM354_RS25415 3fc8d262e2ed5da5d4fe6945074cf704 161 Pfam PF03748 Flagellar basal body-associated protein FliL 59 159 6.7E-22 T 29-03-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 AM354_RS20940 8bcb2de2501648e4f08deabbb4d4f19b 94 Pfam PF03658 RnfH family Ubiquitin 4 86 1.4E-34 T 29-03-2018 IPR005346 RnfH protein AM354_RS20940 8bcb2de2501648e4f08deabbb4d4f19b 94 SUPERFAMILY SSF54285 4 78 4.64E-26 T 29-03-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp AM354_RS20940 8bcb2de2501648e4f08deabbb4d4f19b 94 Hamap MF_00460 Protein RnfH [rnfH]. 4 94 26.207 T 29-03-2018 IPR005346 RnfH protein AM354_RS20940 8bcb2de2501648e4f08deabbb4d4f19b 94 Gene3D G3DSA:3.10.20.280 1 87 3.1E-34 T 29-03-2018 IPR005346 RnfH protein AM354_RS08050 a9fedd9bf9b2cd03cea37d2571fada88 263 SMART SM01232 126 221 1.2E-17 T 29-03-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 AM354_RS08050 a9fedd9bf9b2cd03cea37d2571fada88 263 SUPERFAMILY SSF57716 226 263 4.16E-11 T 29-03-2018 AM354_RS08050 a9fedd9bf9b2cd03cea37d2571fada88 263 ProSitePatterns PS01242 Zinc finger FPG-type signature. 238 262 - T 29-03-2018 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 AM354_RS08050 a9fedd9bf9b2cd03cea37d2571fada88 263 SMART SM00898 2 110 2.2E-15 T 29-03-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AM354_RS08050 a9fedd9bf9b2cd03cea37d2571fada88 263 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 126 205 1.7E-11 T 29-03-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 AM354_RS08050 a9fedd9bf9b2cd03cea37d2571fada88 263 Gene3D G3DSA:1.10.8.50 121 263 1.1E-38 T 29-03-2018 AM354_RS08050 a9fedd9bf9b2cd03cea37d2571fada88 263 SUPERFAMILY SSF46946 125 215 1.62E-17 T 29-03-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 AM354_RS08050 a9fedd9bf9b2cd03cea37d2571fada88 263 Gene3D G3DSA:3.20.190.10 2 120 1.7E-22 T 29-03-2018 AM354_RS08050 a9fedd9bf9b2cd03cea37d2571fada88 263 Hamap MF_01253 Endonuclease 8 [nei]. 1 263 59.924 T 29-03-2018 IPR023713 Endonuclease VIII GO:0003684|GO:0004519|GO:0006284|GO:0008270 AM354_RS08050 a9fedd9bf9b2cd03cea37d2571fada88 263 Pfam PF06827 Zinc finger found in FPG and IleRS 235 263 1.7E-7 T 29-03-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 AM354_RS08050 a9fedd9bf9b2cd03cea37d2571fada88 263 SUPERFAMILY SSF81624 2 127 1.44E-22 T 29-03-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AM354_RS08050 a9fedd9bf9b2cd03cea37d2571fada88 263 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 102 2.1E-9 T 29-03-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AM354_RS07755 4036f8cf23b6bf9efe4bff06250e97fb 133 Pfam PF06803 Protein of unknown function (DUF1232) 41 77 5.2E-14 T 29-03-2018 IPR010652 Protein of unknown function DUF1232 AM354_RS16740 5286b01234968d7fef51da0d5a92e933 560 Pfam PF11846 Virulence factor membrane-bound polymerase, C-terminal 381 557 5.4E-19 T 29-03-2018 IPR021797 Virulence factor membrane-bound polymerase, C-terminal AM354_RS16740 5286b01234968d7fef51da0d5a92e933 560 Pfam PF15864 Protein glycosylation ligase 163 188 7.7E-9 T 29-03-2018 IPR031726 Protein glycosylation ligase domain AM354_RS16740 5286b01234968d7fef51da0d5a92e933 560 Pfam PF04932 O-Antigen ligase 207 352 2.4E-16 T 29-03-2018 IPR007016 O-antigen ligase-related AM354_RS16430 dd2acc2d520bb63e9b499cc43ddd5dbc 333 Gene3D G3DSA:1.10.260.40 9 62 3.1E-19 T 29-03-2018 AM354_RS16430 dd2acc2d520bb63e9b499cc43ddd5dbc 333 Gene3D G3DSA:3.40.50.2300 63 182 2.6E-33 T 29-03-2018 AM354_RS16430 dd2acc2d520bb63e9b499cc43ddd5dbc 333 SMART SM00354 8 79 3.3E-23 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS16430 dd2acc2d520bb63e9b499cc43ddd5dbc 333 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 68 274 9.5E-30 T 29-03-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain AM354_RS16430 dd2acc2d520bb63e9b499cc43ddd5dbc 333 SUPERFAMILY SSF47413 7 67 4.82E-14 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS16430 dd2acc2d520bb63e9b499cc43ddd5dbc 333 SUPERFAMILY SSF53822 69 332 7.43E-69 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS16430 dd2acc2d520bb63e9b499cc43ddd5dbc 333 Pfam PF00356 Bacterial regulatory proteins, lacI family 13 56 7.4E-13 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS16430 dd2acc2d520bb63e9b499cc43ddd5dbc 333 Gene3D G3DSA:3.40.50.2300 183 312 7.3E-41 T 29-03-2018 AM354_RS11615 b869b056333b0506bc6defe75b49f3d4 682 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 429 657 4.7E-36 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS11615 b869b056333b0506bc6defe75b49f3d4 682 Gene3D G3DSA:1.10.10.10 598 669 9.1E-25 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS11615 b869b056333b0506bc6defe75b49f3d4 682 SUPERFAMILY SSF88659 595 665 4.86E-20 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS11615 b869b056333b0506bc6defe75b49f3d4 682 Gene3D G3DSA:1.25.40.20 12 92 1.8E-15 T 29-03-2018 IPR020683 Ankyrin repeat-containing domain AM354_RS11615 b869b056333b0506bc6defe75b49f3d4 682 Pfam PF13606 Ankyrin repeat 44 71 1.2E-5 T 29-03-2018 IPR002110 Ankyrin repeat GO:0005515 AM354_RS11615 b869b056333b0506bc6defe75b49f3d4 682 Gene3D G3DSA:1.10.10.10 503 553 0.0019 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS11615 b869b056333b0506bc6defe75b49f3d4 682 PRINTS PR00046 Major sigma-70 factor signature 644 655 8.3E-30 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS11615 b869b056333b0506bc6defe75b49f3d4 682 PRINTS PR00046 Major sigma-70 factor signature 629 644 8.3E-30 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS11615 b869b056333b0506bc6defe75b49f3d4 682 PRINTS PR00046 Major sigma-70 factor signature 458 471 8.3E-30 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS11615 b869b056333b0506bc6defe75b49f3d4 682 PRINTS PR00046 Major sigma-70 factor signature 482 490 8.3E-30 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS11615 b869b056333b0506bc6defe75b49f3d4 682 PRINTS PR00046 Major sigma-70 factor signature 608 620 8.3E-30 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS11615 b869b056333b0506bc6defe75b49f3d4 682 Pfam PF04545 Sigma-70, region 4 604 657 1.4E-18 T 29-03-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS11615 b869b056333b0506bc6defe75b49f3d4 682 Gene3D G3DSA:1.10.601.10 93 502 1.7E-54 T 29-03-2018 AM354_RS11615 b869b056333b0506bc6defe75b49f3d4 682 SMART SM00248 43 72 9.8E-4 T 29-03-2018 IPR002110 Ankyrin repeat GO:0005515 AM354_RS11615 b869b056333b0506bc6defe75b49f3d4 682 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 458 471 - T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS11615 b869b056333b0506bc6defe75b49f3d4 682 SUPERFAMILY SSF88946 397 501 8.24E-44 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS11615 b869b056333b0506bc6defe75b49f3d4 682 SUPERFAMILY SSF88946 284 340 8.24E-44 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS11615 b869b056333b0506bc6defe75b49f3d4 682 SUPERFAMILY SSF48403 14 91 1.87E-14 T 29-03-2018 IPR020683 Ankyrin repeat-containing domain AM354_RS11615 b869b056333b0506bc6defe75b49f3d4 682 Pfam PF04542 Sigma-70 region 2 434 502 2.6E-22 T 29-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS11615 b869b056333b0506bc6defe75b49f3d4 682 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 629 655 - T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS11615 b869b056333b0506bc6defe75b49f3d4 682 ProSitePatterns PS00018 EF-hand calcium-binding domain. 365 377 - T 29-03-2018 IPR018247 EF-Hand 1, calcium-binding site AM354_RS10305 2a6dd6b95dbdace68faa0c814d08c098 229 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 54 225 38.656 T 29-03-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 AM354_RS10305 2a6dd6b95dbdace68faa0c814d08c098 229 SUPERFAMILY SSF52540 52 217 3.78E-36 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS10305 2a6dd6b95dbdace68faa0c814d08c098 229 Pfam PF01583 Adenylylsulphate kinase 55 208 3.0E-73 T 29-03-2018 AM354_RS10305 2a6dd6b95dbdace68faa0c814d08c098 229 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 38 221 6.8E-87 T 29-03-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 AM354_RS10305 2a6dd6b95dbdace68faa0c814d08c098 229 Gene3D G3DSA:3.40.50.300 51 229 3.1E-48 T 29-03-2018 AM354_RS01920 6102d92e1ff6ad7ec24c958e04e16adf 380 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 54 285 4.0E-14 T 29-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AM354_RS01920 6102d92e1ff6ad7ec24c958e04e16adf 380 Gene3D G3DSA:1.20.1600.10 26 335 8.7E-29 T 29-03-2018 AM354_RS01920 6102d92e1ff6ad7ec24c958e04e16adf 380 SUPERFAMILY SSF111369 47 292 5.23E-80 T 29-03-2018 AM354_RS01920 6102d92e1ff6ad7ec24c958e04e16adf 380 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 35 367 2.8E-81 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AM354_RS01610 4743833de173db7cdd865e54f1d2ebe3 359 Gene3D G3DSA:3.40.50.1820 7 353 1.1E-34 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS01610 4743833de173db7cdd865e54f1d2ebe3 359 Pfam PF12146 Serine aminopeptidase, S33 81 334 3.9E-17 T 29-03-2018 IPR022742 Serine aminopeptidase, S33 AM354_RS01610 4743833de173db7cdd865e54f1d2ebe3 359 SUPERFAMILY SSF53474 26 352 8.32E-37 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS00365 9fddc3406fdc1823a9e022e4c53c507f 268 SUPERFAMILY SSF56219 1 267 6.41E-89 T 29-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase AM354_RS00365 9fddc3406fdc1823a9e022e4c53c507f 268 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 266 1.6E-105 T 29-03-2018 AM354_RS00365 9fddc3406fdc1823a9e022e4c53c507f 268 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 27 36 - T 29-03-2018 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 AM354_RS00365 9fddc3406fdc1823a9e022e4c53c507f 268 ProSitePatterns PS00728 AP endonucleases family 1 signature 3. 223 234 - T 29-03-2018 IPR020848 AP endonuclease 1, conserved site GO:0003677|GO:0004519|GO:0005622|GO:0006281 Reactome: R-HSA-110357|Reactome: R-HSA-110362|Reactome: R-HSA-110373|Reactome: R-HSA-5651801|Reactome: R-HSA-73930|Reactome: R-HSA-73933 AM354_RS00365 9fddc3406fdc1823a9e022e4c53c507f 268 ProSitePatterns PS00727 AP endonucleases family 1 signature 2. 197 213 - T 29-03-2018 IPR020848 AP endonuclease 1, conserved site GO:0003677|GO:0004519|GO:0005622|GO:0006281 Reactome: R-HSA-110357|Reactome: R-HSA-110362|Reactome: R-HSA-110373|Reactome: R-HSA-5651801|Reactome: R-HSA-73930|Reactome: R-HSA-73933 AM354_RS00365 9fddc3406fdc1823a9e022e4c53c507f 268 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 266 2.6E-90 T 29-03-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 AM354_RS00365 9fddc3406fdc1823a9e022e4c53c507f 268 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 259 4.5E-22 T 29-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase AM354_RS00365 9fddc3406fdc1823a9e022e4c53c507f 268 Gene3D G3DSA:3.60.10.10 1 268 1.2E-53 T 29-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase AM354_RS06280 9eef35abe2c7fcdbbab828a6bce33e2d 443 Gene3D G3DSA:2.40.50.100 289 420 0.002 T 29-03-2018 AM354_RS06280 9eef35abe2c7fcdbbab828a6bce33e2d 443 Gene3D G3DSA:2.40.50.100 63 212 1.5E-12 T 29-03-2018 AM354_RS06280 9eef35abe2c7fcdbbab828a6bce33e2d 443 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 21 443 8.8E-117 T 29-03-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 AM354_RS06280 9eef35abe2c7fcdbbab828a6bce33e2d 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 364 387 1.4E-63 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AM354_RS06280 9eef35abe2c7fcdbbab828a6bce33e2d 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 422 442 1.4E-63 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AM354_RS06280 9eef35abe2c7fcdbbab828a6bce33e2d 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 74 94 1.4E-63 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AM354_RS06280 9eef35abe2c7fcdbbab828a6bce33e2d 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 307 328 1.4E-63 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AM354_RS06280 9eef35abe2c7fcdbbab828a6bce33e2d 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 32 55 1.4E-63 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AM354_RS06280 9eef35abe2c7fcdbbab828a6bce33e2d 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 340 364 1.4E-63 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AM354_RS06280 9eef35abe2c7fcdbbab828a6bce33e2d 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 407 422 1.4E-63 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AM354_RS06280 9eef35abe2c7fcdbbab828a6bce33e2d 443 SUPERFAMILY SSF111369 62 129 3.53E-6 T 29-03-2018 AM354_RS06280 9eef35abe2c7fcdbbab828a6bce33e2d 443 SUPERFAMILY SSF111369 235 346 8.24E-6 T 29-03-2018 AM354_RS06280 9eef35abe2c7fcdbbab828a6bce33e2d 443 ProSitePatterns PS00543 HlyD family secretion proteins signature. 407 429 - T 29-03-2018 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 AM354_RS06280 9eef35abe2c7fcdbbab828a6bce33e2d 443 Gene3D G3DSA:1.20.5.170 216 288 0.0054 T 29-03-2018 AM354_RS06280 9eef35abe2c7fcdbbab828a6bce33e2d 443 Pfam PF00529 HlyD membrane-fusion protein of T1SS 35 399 2.8E-19 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AM354_RS07095 7d642db628e8c4421b3d132366415250 289 SUPERFAMILY SSF46785 4 114 1.0E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS07095 7d642db628e8c4421b3d132366415250 289 Gene3D G3DSA:1.10.10.10 1 88 1.3E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS07095 7d642db628e8c4421b3d132366415250 289 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 1.2E-18 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS07095 7d642db628e8c4421b3d132366415250 289 SUPERFAMILY SSF53850 92 287 7.06E-29 T 29-03-2018 AM354_RS07095 7d642db628e8c4421b3d132366415250 289 Gene3D G3DSA:3.40.190.10 176 261 4.7E-13 T 29-03-2018 AM354_RS07095 7d642db628e8c4421b3d132366415250 289 Gene3D G3DSA:3.40.190.10 94 175 1.6E-14 T 29-03-2018 AM354_RS07095 7d642db628e8c4421b3d132366415250 289 Pfam PF03466 LysR substrate binding domain 92 286 4.3E-28 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS13145 bb2b72cfcbf0e6cea4f589e3377634e3 422 Hamap MF_00753 Anaerobic glycerol-3-phosphate dehydrogenase subunit B [glpB]. 1 420 49.119 T 29-03-2018 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 AM354_RS13145 bb2b72cfcbf0e6cea4f589e3377634e3 422 SUPERFAMILY SSF51905 79 102 3.45E-30 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS13145 bb2b72cfcbf0e6cea4f589e3377634e3 422 SUPERFAMILY SSF51905 254 419 3.45E-30 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS13145 bb2b72cfcbf0e6cea4f589e3377634e3 422 SUPERFAMILY SSF51905 132 200 3.45E-30 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS13145 bb2b72cfcbf0e6cea4f589e3377634e3 422 SUPERFAMILY SSF51905 1 35 3.45E-30 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS13145 bb2b72cfcbf0e6cea4f589e3377634e3 422 Gene3D G3DSA:3.50.50.60 1 422 8.7E-28 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS13145 bb2b72cfcbf0e6cea4f589e3377634e3 422 TIGRFAM TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit 3 416 1.4E-170 T 29-03-2018 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 AM354_RS13145 bb2b72cfcbf0e6cea4f589e3377634e3 422 PIRSF PIRSF000141 1 422 3.3E-168 T 29-03-2018 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 AM354_RS13145 bb2b72cfcbf0e6cea4f589e3377634e3 422 Pfam PF00890 FAD binding domain 4 404 6.3E-65 T 29-03-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM354_RS04850 9aae7693860d9aee9389c9b81eba74f0 173 Pfam PF02620 Uncharacterized ACR, COG1399 62 171 6.7E-18 T 29-03-2018 IPR003772 Large ribosomal RNA subunit accumulation protein YceD AM354_RS12865 7348fb237199111a97f1136ee1502534 729 Gene3D G3DSA:3.40.50.720 255 495 3.3E-61 T 29-03-2018 AM354_RS12865 7348fb237199111a97f1136ee1502534 729 Pfam PF00378 Enoyl-CoA hydratase/isomerase 15 206 7.6E-44 T 29-03-2018 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AM354_RS12865 7348fb237199111a97f1136ee1502534 729 SUPERFAMILY SSF48179 495 638 1.19E-31 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM354_RS12865 7348fb237199111a97f1136ee1502534 729 Gene3D G3DSA:3.90.226.10 3 207 2.1E-56 T 29-03-2018 AM354_RS12865 7348fb237199111a97f1136ee1502534 729 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 316 494 5.1E-60 T 29-03-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM354_RS12865 7348fb237199111a97f1136ee1502534 729 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 493 517 - T 29-03-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM354_RS12865 7348fb237199111a97f1136ee1502534 729 Gene3D G3DSA:1.10.1040.10 503 592 4.2E-22 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM354_RS12865 7348fb237199111a97f1136ee1502534 729 TIGRFAM TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB 1 714 0.0 T 29-03-2018 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM354_RS12865 7348fb237199111a97f1136ee1502534 729 SUPERFAMILY SSF52096 2 304 7.41E-73 T 29-03-2018 IPR029045 ClpP/crotonase-like domain AM354_RS12865 7348fb237199111a97f1136ee1502534 729 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 627 686 1.7E-4 T 29-03-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM354_RS12865 7348fb237199111a97f1136ee1502534 729 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 496 592 3.3E-25 T 29-03-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM354_RS12865 7348fb237199111a97f1136ee1502534 729 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 106 126 - T 29-03-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 AM354_RS12865 7348fb237199111a97f1136ee1502534 729 SUPERFAMILY SSF48179 622 714 4.68E-23 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM354_RS12865 7348fb237199111a97f1136ee1502534 729 SUPERFAMILY SSF51735 314 495 1.21E-56 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS12865 7348fb237199111a97f1136ee1502534 729 Gene3D G3DSA:1.10.1040.10 622 713 7.7E-16 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM354_RS12865 7348fb237199111a97f1136ee1502534 729 Hamap MF_01621 Fatty acid oxidation complex subunit alpha [fadB]. 1 715 53.202 T 29-03-2018 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM354_RS12345 a6563acac6c0051717026902c8f0cbbc 156 SUPERFAMILY SSF52540 27 139 1.17E-24 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS12345 a6563acac6c0051717026902c8f0cbbc 156 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 8 140 4.0E-55 T 29-03-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 AM354_RS12345 a6563acac6c0051717026902c8f0cbbc 156 Gene3D G3DSA:3.40.50.300 1 153 2.3E-52 T 29-03-2018 AM354_RS12345 a6563acac6c0051717026902c8f0cbbc 156 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 9 133 1.7E-41 T 29-03-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 AM354_RS12820 8a6c6d9566c2506ed15746574974f565 345 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 345 88.259 T 29-03-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS12820 8a6c6d9566c2506ed15746574974f565 345 SUPERFAMILY SSF56194 205 341 9.68E-55 T 29-03-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS12820 8a6c6d9566c2506ed15746574974f565 345 SUPERFAMILY SSF56176 7 200 1.69E-40 T 29-03-2018 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AM354_RS12820 8a6c6d9566c2506ed15746574974f565 345 Pfam PF01565 FAD binding domain 24 149 2.5E-19 T 29-03-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AM354_RS12820 8a6c6d9566c2506ed15746574974f565 345 Gene3D G3DSA:3.30.465.10 72 221 3.8E-48 T 29-03-2018 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AM354_RS12820 8a6c6d9566c2506ed15746574974f565 345 Gene3D G3DSA:3.30.43.10 1 70 6.6E-17 T 29-03-2018 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 AM354_RS12820 8a6c6d9566c2506ed15746574974f565 345 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 8 333 3.0E-108 T 29-03-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS12820 8a6c6d9566c2506ed15746574974f565 345 Gene3D G3DSA:3.90.78.10 224 337 9.2E-44 T 29-03-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS12820 8a6c6d9566c2506ed15746574974f565 345 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 208 332 8.7E-37 T 29-03-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS02785 8b3f2caadfff2714b16e0c19f383a333 122 PIRSF PIRSF039020 1 122 1.3E-45 T 29-03-2018 IPR026275 Glyoxalase/dioxygenase/EhpR AM354_RS02785 8b3f2caadfff2714b16e0c19f383a333 122 Gene3D G3DSA:3.10.180.10 5 121 3.8E-18 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS02785 8b3f2caadfff2714b16e0c19f383a333 122 SUPERFAMILY SSF54593 8 119 2.89E-21 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS02785 8b3f2caadfff2714b16e0c19f383a333 122 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 8 115 1.9E-8 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AM354_RS13715 45d85fa09e7f02973279e34cdca9d75c 381 Gene3D G3DSA:1.10.1040.10 205 380 1.3E-46 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM354_RS13715 45d85fa09e7f02973279e34cdca9d75c 381 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 148 371 3.2E-65 T 29-03-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 AM354_RS13715 45d85fa09e7f02973279e34cdca9d75c 381 SUPERFAMILY SSF51735 1 201 8.19E-48 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS13715 45d85fa09e7f02973279e34cdca9d75c 381 SUPERFAMILY SSF48179 202 380 5.1E-46 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM354_RS13715 45d85fa09e7f02973279e34cdca9d75c 381 PRINTS PR00084 Mannitol dehydrogenase signature 3 13 9.7E-18 T 29-03-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AM354_RS13715 45d85fa09e7f02973279e34cdca9d75c 381 PRINTS PR00084 Mannitol dehydrogenase signature 114 127 9.7E-18 T 29-03-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AM354_RS13715 45d85fa09e7f02973279e34cdca9d75c 381 PRINTS PR00084 Mannitol dehydrogenase signature 168 183 9.7E-18 T 29-03-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AM354_RS13715 45d85fa09e7f02973279e34cdca9d75c 381 PRINTS PR00084 Mannitol dehydrogenase signature 150 163 9.7E-18 T 29-03-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AM354_RS13715 45d85fa09e7f02973279e34cdca9d75c 381 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 1 123 7.3E-25 T 29-03-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 AM354_RS13715 45d85fa09e7f02973279e34cdca9d75c 381 ProSitePatterns PS00974 Mannitol dehydrogenases signature. 150 162 - T 29-03-2018 IPR023027 Mannitol dehydrogenase, conserved site GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AM354_RS13715 45d85fa09e7f02973279e34cdca9d75c 381 Gene3D G3DSA:3.40.50.720 76 200 1.5E-29 T 29-03-2018 AM354_RS13715 45d85fa09e7f02973279e34cdca9d75c 381 Gene3D G3DSA:3.40.50.720 1 75 1.7E-6 T 29-03-2018 AM354_RS13715 45d85fa09e7f02973279e34cdca9d75c 381 Hamap MF_00196 Mannitol-1-phosphate 5-dehydrogenase [mtlD]. 1 376 41.409 T 29-03-2018 IPR023028 Mannitol-1-phosphate 5-dehydrogenase GO:0008926|GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AM354_RS02995 acc425c7a5701977f372fe28794db44d 201 Gene3D G3DSA:1.20.1050.10 109 201 3.5E-25 T 29-03-2018 AM354_RS02995 acc425c7a5701977f372fe28794db44d 201 SUPERFAMILY SSF47616 81 199 5.08E-30 T 29-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like AM354_RS02995 acc425c7a5701977f372fe28794db44d 201 Pfam PF00043 Glutathione S-transferase, C-terminal domain 102 189 8.0E-19 T 29-03-2018 IPR004046 Glutathione S-transferase, C-terminal AM354_RS02995 acc425c7a5701977f372fe28794db44d 201 SUPERFAMILY SSF52833 1 85 3.66E-19 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS02995 acc425c7a5701977f372fe28794db44d 201 Pfam PF02798 Glutathione S-transferase, N-terminal domain 8 74 1.2E-11 T 29-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AM354_RS02995 acc425c7a5701977f372fe28794db44d 201 Gene3D G3DSA:3.40.30.10 1 108 6.2E-22 T 29-03-2018 AM354_RS07505 225c58b86751914ba3b11b738fc7a181 180 Gene3D G3DSA:3.40.630.30 16 168 1.5E-20 T 29-03-2018 AM354_RS07505 225c58b86751914ba3b11b738fc7a181 180 Pfam PF00583 Acetyltransferase (GNAT) family 40 145 9.0E-18 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS07505 225c58b86751914ba3b11b738fc7a181 180 PRINTS PR01754 Streptothricin acetyltransferase signature 137 153 1.4E-10 T 29-03-2018 IPR008125 Streptothricin acetyltransferase AM354_RS07505 225c58b86751914ba3b11b738fc7a181 180 PRINTS PR01754 Streptothricin acetyltransferase signature 92 107 1.4E-10 T 29-03-2018 IPR008125 Streptothricin acetyltransferase AM354_RS07505 225c58b86751914ba3b11b738fc7a181 180 PRINTS PR01754 Streptothricin acetyltransferase signature 116 131 1.4E-10 T 29-03-2018 IPR008125 Streptothricin acetyltransferase AM354_RS07505 225c58b86751914ba3b11b738fc7a181 180 SUPERFAMILY SSF55729 19 160 3.14E-22 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS23290 cd61f4ea52571edebaefde2fbd1a046d 86 Gene3D G3DSA:3.10.20.30 1 86 1.0E-15 T 29-03-2018 IPR012675 Beta-grasp domain AM354_RS23290 cd61f4ea52571edebaefde2fbd1a046d 86 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 39 47 - T 29-03-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AM354_RS23290 cd61f4ea52571edebaefde2fbd1a046d 86 SUPERFAMILY SSF54292 5 85 1.7E-18 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM354_RS23290 cd61f4ea52571edebaefde2fbd1a046d 86 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 12 78 2.0E-9 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM354_RS03190 ebd9fb0fe830ea53b0e51c35a049cca3 337 Gene3D G3DSA:3.10.350.10 37 90 3.9E-6 T 29-03-2018 AM354_RS03190 ebd9fb0fe830ea53b0e51c35a049cca3 337 Pfam PF03734 L,D-transpeptidase catalytic domain 99 234 2.4E-18 T 29-03-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AM354_RS03190 ebd9fb0fe830ea53b0e51c35a049cca3 337 SUPERFAMILY SSF141523 93 147 6.28E-29 T 29-03-2018 AM354_RS03190 ebd9fb0fe830ea53b0e51c35a049cca3 337 SUPERFAMILY SSF141523 175 235 6.28E-29 T 29-03-2018 AM354_RS03190 ebd9fb0fe830ea53b0e51c35a049cca3 337 Gene3D G3DSA:2.40.440.10 92 236 9.0E-29 T 29-03-2018 AM354_RS11010 5bd1f3e9701845a33af07c4b7b9374d2 331 SUPERFAMILY SSF50129 2 139 1.11E-28 T 29-03-2018 IPR011032 GroES-like AM354_RS11010 5bd1f3e9701845a33af07c4b7b9374d2 331 Pfam PF16884 N-terminal domain of oxidoreductase 4 105 3.7E-23 T 29-03-2018 AM354_RS11010 5bd1f3e9701845a33af07c4b7b9374d2 331 Pfam PF00107 Zinc-binding dehydrogenase 154 283 4.7E-19 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AM354_RS11010 5bd1f3e9701845a33af07c4b7b9374d2 331 SUPERFAMILY SSF51735 120 294 1.35E-45 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS11010 5bd1f3e9701845a33af07c4b7b9374d2 331 SMART SM00829 14 328 1.6E-5 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AM354_RS11010 5bd1f3e9701845a33af07c4b7b9374d2 331 Gene3D G3DSA:3.40.50.720 145 272 2.8E-26 T 29-03-2018 AM354_RS11010 5bd1f3e9701845a33af07c4b7b9374d2 331 Gene3D G3DSA:3.90.180.10 1 144 1.5E-32 T 29-03-2018 AM354_RS05760 32641f959102dac50e84a6877ca24ab4 579 SUPERFAMILY SSF90123 7 327 2.09E-38 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM354_RS05760 32641f959102dac50e84a6877ca24ab4 579 TIGRFAM TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit 7 534 3.6E-158 T 29-03-2018 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC GO:0006810|GO:0016021|GO:0042626 AM354_RS05760 32641f959102dac50e84a6877ca24ab4 579 Gene3D G3DSA:1.20.1560.10 2 323 1.5E-29 T 29-03-2018 AM354_RS05760 32641f959102dac50e84a6877ca24ab4 579 Pfam PF00005 ABC transporter 356 503 2.4E-31 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS05760 32641f959102dac50e84a6877ca24ab4 579 Gene3D G3DSA:3.40.50.300 326 576 2.8E-70 T 29-03-2018 AM354_RS05760 32641f959102dac50e84a6877ca24ab4 579 SUPERFAMILY SSF52540 336 572 1.67E-72 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS05760 32641f959102dac50e84a6877ca24ab4 579 SMART SM00382 365 556 2.8E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS05760 32641f959102dac50e84a6877ca24ab4 579 ProSitePatterns PS00211 ABC transporters family signature. 476 490 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS05760 32641f959102dac50e84a6877ca24ab4 579 Pfam PF00664 ABC transporter transmembrane region 68 288 2.4E-8 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM354_RS22880 98a898816e9d8781753e80553885ede4 238 Pfam PF13462 Thioredoxin 75 229 7.1E-23 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS22880 98a898816e9d8781753e80553885ede4 238 ProSitePatterns PS00194 Thioredoxin family active site. 89 107 - T 29-03-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AM354_RS22880 98a898816e9d8781753e80553885ede4 238 Gene3D G3DSA:3.40.30.10 63 238 1.3E-39 T 29-03-2018 AM354_RS22880 98a898816e9d8781753e80553885ede4 238 SUPERFAMILY SSF52833 64 229 2.27E-42 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS21320 8be137e069b9103b0e4150f78d81f3f2 318 Pfam PF03547 Membrane transport protein 14 148 8.1E-9 T 29-03-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 AM354_RS21320 8be137e069b9103b0e4150f78d81f3f2 318 Pfam PF03547 Membrane transport protein 169 307 5.8E-11 T 29-03-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 AM354_RS20615 eb9bac3ea294c4b6c11eeb6a58a5292d 165 Pfam PF00583 Acetyltransferase (GNAT) family 41 133 2.1E-18 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS20615 eb9bac3ea294c4b6c11eeb6a58a5292d 165 Gene3D G3DSA:3.40.630.30 1 158 6.5E-33 T 29-03-2018 AM354_RS20615 eb9bac3ea294c4b6c11eeb6a58a5292d 165 SUPERFAMILY SSF55729 3 151 2.23E-36 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS12320 374857c59a655504c6c716d8f631fec3 426 PIRSF PIRSF006809 3 420 7.6E-150 T 29-03-2018 IPR016496 GTPase HflX GO:0005525 AM354_RS12320 374857c59a655504c6c716d8f631fec3 426 Pfam PF16360 GTP-binding GTPase Middle Region 114 192 1.2E-28 T 29-03-2018 IPR032305 GTP-binding protein, middle domain AM354_RS12320 374857c59a655504c6c716d8f631fec3 426 SUPERFAMILY SSF52540 197 376 8.34E-41 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS12320 374857c59a655504c6c716d8f631fec3 426 Pfam PF01926 50S ribosome-binding GTPase 200 318 1.4E-20 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 AM354_RS12320 374857c59a655504c6c716d8f631fec3 426 Pfam PF13167 GTP-binding GTPase N-terminal 25 112 2.3E-31 T 29-03-2018 IPR025121 GTPase HflX, N-terminal AM354_RS12320 374857c59a655504c6c716d8f631fec3 426 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 10 361 9.2E-155 T 29-03-2018 IPR016496 GTPase HflX GO:0005525 AM354_RS12320 374857c59a655504c6c716d8f631fec3 426 Gene3D G3DSA:3.40.50.300 165 228 1.2E-11 T 29-03-2018 AM354_RS12320 374857c59a655504c6c716d8f631fec3 426 Hamap MF_00900 GTPase HflX [hflX]. 27 390 47.019 T 29-03-2018 IPR016496 GTPase HflX GO:0005525 AM354_RS12320 374857c59a655504c6c716d8f631fec3 426 SUPERFAMILY SSF54980 366 422 5.75E-13 T 29-03-2018 IPR035647 EF-G domain III/V-like AM354_RS12320 374857c59a655504c6c716d8f631fec3 426 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 267 285 1.7E-10 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 AM354_RS12320 374857c59a655504c6c716d8f631fec3 426 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 221 239 1.7E-10 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 AM354_RS12320 374857c59a655504c6c716d8f631fec3 426 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 200 220 1.7E-10 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 AM354_RS12320 374857c59a655504c6c716d8f631fec3 426 Gene3D G3DSA:3.40.50.300 229 370 2.7E-16 T 29-03-2018 AM354_RS12120 aaf5c78b2f719e59d1645e5b14d35d7f 86 Pfam PF13693 Winged helix-turn-helix DNA-binding 7 80 1.2E-37 T 29-03-2018 AM354_RS12120 aaf5c78b2f719e59d1645e5b14d35d7f 86 Gene3D G3DSA:1.10.260.40 1 73 2.3E-16 T 29-03-2018 AM354_RS12120 aaf5c78b2f719e59d1645e5b14d35d7f 86 SUPERFAMILY SSF47413 2 72 1.83E-31 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS21805 d9a01b5afeec689fc223d02683844c7d 238 SUPERFAMILY SSF52172 7 182 3.52E-38 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS21805 d9a01b5afeec689fc223d02683844c7d 238 Gene3D G3DSA:1.10.10.10 130 233 2.2E-27 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS21805 d9a01b5afeec689fc223d02683844c7d 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 226 3.9E-23 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS21805 d9a01b5afeec689fc223d02683844c7d 238 Pfam PF00072 Response regulator receiver domain 10 118 4.2E-25 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS21805 d9a01b5afeec689fc223d02683844c7d 238 Gene3D G3DSA:3.40.50.2300 1 129 9.7E-34 T 29-03-2018 AM354_RS21805 d9a01b5afeec689fc223d02683844c7d 238 SMART SM00448 8 118 9.4E-38 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS21805 d9a01b5afeec689fc223d02683844c7d 238 SMART SM00862 151 227 4.6E-26 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS20235 96c6fcfe6eb90169198a82a850d835c4 262 SUPERFAMILY SSF51161 2 262 8.07E-79 T 29-03-2018 IPR011004 Trimeric LpxA-like AM354_RS20235 96c6fcfe6eb90169198a82a850d835c4 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 17 52 9.9E-9 T 29-03-2018 IPR001451 Hexapeptide repeat AM354_RS20235 96c6fcfe6eb90169198a82a850d835c4 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 109 143 1.2E-6 T 29-03-2018 IPR001451 Hexapeptide repeat AM354_RS20235 96c6fcfe6eb90169198a82a850d835c4 262 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 20 48 - T 29-03-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AM354_RS20235 96c6fcfe6eb90169198a82a850d835c4 262 Gene3D G3DSA:2.160.10.10 1 196 7.9E-42 T 29-03-2018 AM354_RS20235 96c6fcfe6eb90169198a82a850d835c4 262 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 180 261 4.2E-30 T 29-03-2018 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12 AM354_RS20235 96c6fcfe6eb90169198a82a850d835c4 262 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 153 181 - T 29-03-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AM354_RS20235 96c6fcfe6eb90169198a82a850d835c4 262 Gene3D G3DSA:1.20.1180.10 197 262 1.2E-24 T 29-03-2018 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12 AM354_RS20235 96c6fcfe6eb90169198a82a850d835c4 262 PIRSF PIRSF000456 5 262 1.7E-108 T 29-03-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12 AM354_RS20235 96c6fcfe6eb90169198a82a850d835c4 262 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 8 260 1.5E-110 T 29-03-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12 AM354_RS20235 96c6fcfe6eb90169198a82a850d835c4 262 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 5 262 47.687 T 29-03-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12 AM354_RS03500 1631f42ab9a2e5f180430afe937b2905 221 Gene3D G3DSA:3.40.50.1000 80 221 3.7E-27 T 29-03-2018 IPR023214 HAD-like domain AM354_RS03500 1631f42ab9a2e5f180430afe937b2905 221 Gene3D G3DSA:1.10.150.240 20 79 3.8E-18 T 29-03-2018 IPR023198 Phosphoglycolate phosphatase, domain 2 AM354_RS03500 1631f42ab9a2e5f180430afe937b2905 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 104 117 4.2E-8 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS03500 1631f42ab9a2e5f180430afe937b2905 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 7 18 4.2E-8 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS03500 1631f42ab9a2e5f180430afe937b2905 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 153 173 4.2E-8 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS03500 1631f42ab9a2e5f180430afe937b2905 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 135 151 4.2E-8 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS03500 1631f42ab9a2e5f180430afe937b2905 221 Pfam PF13419 Haloacid dehalogenase-like hydrolase 11 190 3.1E-25 T 29-03-2018 IPR023214 HAD-like domain AM354_RS03500 1631f42ab9a2e5f180430afe937b2905 221 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 87 191 1.7E-11 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS03500 1631f42ab9a2e5f180430afe937b2905 221 SUPERFAMILY SSF56784 7 216 3.17E-49 T 29-03-2018 IPR023214 HAD-like domain AM354_RS18975 f6459de337ccfbdb2b95bbb1b7aab7f6 264 Hamap MF_00465 S-adenosylmethionine decarboxylase proenzyme [speD]. 1 264 177.323 T 29-03-2018 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 AM354_RS18975 f6459de337ccfbdb2b95bbb1b7aab7f6 264 SUPERFAMILY SSF56276 112 174 7.06E-23 T 29-03-2018 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|Reactome: R-HSA-351202 AM354_RS18975 f6459de337ccfbdb2b95bbb1b7aab7f6 264 SUPERFAMILY SSF56276 43 84 7.06E-23 T 29-03-2018 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|Reactome: R-HSA-351202 AM354_RS18975 f6459de337ccfbdb2b95bbb1b7aab7f6 264 Pfam PF02675 S-adenosylmethionine decarboxylase 33 169 5.1E-29 T 29-03-2018 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 AM354_RS18975 f6459de337ccfbdb2b95bbb1b7aab7f6 264 Gene3D G3DSA:3.60.90.10 32 189 1.7E-44 T 29-03-2018 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|Reactome: R-HSA-351202 AM354_RS18975 f6459de337ccfbdb2b95bbb1b7aab7f6 264 PIRSF PIRSF001356 1 263 2.8E-156 T 29-03-2018 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 AM354_RS18975 f6459de337ccfbdb2b95bbb1b7aab7f6 264 TIGRFAM TIGR03331 SAM_DCase_Eco: S-adenosylmethionine decarboxylase proenzyme 3 261 4.0E-148 T 29-03-2018 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 AM354_RS20185 26da7ceeb7215e710b34f0b07ad92528 241 SUPERFAMILY SSF53633 7 240 3.01E-73 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase AM354_RS20185 26da7ceeb7215e710b34f0b07ad92528 241 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 9 240 2.1E-103 T 29-03-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 AM354_RS20185 26da7ceeb7215e710b34f0b07ad92528 241 Pfam PF00696 Amino acid kinase family 11 219 2.0E-27 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase AM354_RS20185 26da7ceeb7215e710b34f0b07ad92528 241 PIRSF PIRSF005650 4 241 6.2E-90 T 29-03-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 AM354_RS20185 26da7ceeb7215e710b34f0b07ad92528 241 Hamap MF_01220_B Uridylate kinase [pyrH]. 7 240 44.024 T 29-03-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 AM354_RS20185 26da7ceeb7215e710b34f0b07ad92528 241 Gene3D G3DSA:3.40.1160.10 2 241 8.0E-45 T 29-03-2018 AM354_RS10260 64db1941fab7f90139cf57c9512ab111 253 SUPERFAMILY SSF64167 1 247 1.09E-81 T 29-03-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 AM354_RS10260 64db1941fab7f90139cf57c9512ab111 253 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 1 232 2.8E-74 T 29-03-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 AM354_RS10260 64db1941fab7f90139cf57c9512ab111 253 Pfam PF01975 Survival protein SurE 3 180 1.0E-56 T 29-03-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 AM354_RS10260 64db1941fab7f90139cf57c9512ab111 253 Gene3D G3DSA:3.40.1210.10 1 247 7.4E-82 T 29-03-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 AM354_RS10260 64db1941fab7f90139cf57c9512ab111 253 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 1 249 39.752 T 29-03-2018 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 AM354_RS10460 52c26d689046140d3d9500debd0aa752 429 SUPERFAMILY SSF53383 5 428 3.99E-138 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS10460 52c26d689046140d3d9500debd0aa752 429 Gene3D G3DSA:3.90.1150.10 3 159 1.1E-30 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS10460 52c26d689046140d3d9500debd0aa752 429 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 6 429 107.439 T 29-03-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 AM354_RS10460 52c26d689046140d3d9500debd0aa752 429 Gene3D G3DSA:3.40.640.10 170 311 2.2E-47 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS10460 52c26d689046140d3d9500debd0aa752 429 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 237 273 - T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM354_RS10460 52c26d689046140d3d9500debd0aa752 429 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 6 428 1.6E-201 T 29-03-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 AM354_RS10460 52c26d689046140d3d9500debd0aa752 429 Gene3D G3DSA:3.90.1150.10 312 429 1.0E-19 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS10460 52c26d689046140d3d9500debd0aa752 429 Pfam PF00202 Aminotransferase class-III 35 399 2.8E-79 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM354_RS02795 81767c226d749cba2b67980d932c1f4e 465 ProSitePatterns PS00163 Fumarate lyases signature. 317 326 - T 29-03-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 AM354_RS02795 81767c226d749cba2b67980d932c1f4e 465 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 4 461 1.8E-245 T 29-03-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AM354_RS02795 81767c226d749cba2b67980d932c1f4e 465 Pfam PF00206 Lyase 12 342 1.3E-121 T 29-03-2018 IPR022761 Fumarate lyase, N-terminal AM354_RS02795 81767c226d749cba2b67980d932c1f4e 465 PRINTS PR00145 Argininosuccinate lyase family signature 175 195 1.1E-5 T 29-03-2018 AM354_RS02795 81767c226d749cba2b67980d932c1f4e 465 PRINTS PR00145 Argininosuccinate lyase family signature 317 333 1.1E-5 T 29-03-2018 AM354_RS02795 81767c226d749cba2b67980d932c1f4e 465 Gene3D G3DSA:1.10.275.10 2 138 1.2E-59 T 29-03-2018 IPR024083 Fumarase/histidase, N-terminal AM354_RS02795 81767c226d749cba2b67980d932c1f4e 465 Gene3D G3DSA:1.20.200.10 139 417 3.6E-89 T 29-03-2018 AM354_RS02795 81767c226d749cba2b67980d932c1f4e 465 Hamap MF_00743 Fumarate hydratase class II [fumC]. 4 462 92.026 T 29-03-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AM354_RS02795 81767c226d749cba2b67980d932c1f4e 465 Pfam PF10415 Fumarase C C-terminus 408 461 1.0E-26 T 29-03-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AM354_RS02795 81767c226d749cba2b67980d932c1f4e 465 PRINTS PR00149 Fumarate lyase superfamily signature 134 152 9.8E-34 T 29-03-2018 IPR000362 Fumarate lyase family AM354_RS02795 81767c226d749cba2b67980d932c1f4e 465 PRINTS PR00149 Fumarate lyase superfamily signature 317 333 9.8E-34 T 29-03-2018 IPR000362 Fumarate lyase family AM354_RS02795 81767c226d749cba2b67980d932c1f4e 465 PRINTS PR00149 Fumarate lyase superfamily signature 180 198 9.8E-34 T 29-03-2018 IPR000362 Fumarate lyase family AM354_RS02795 81767c226d749cba2b67980d932c1f4e 465 PRINTS PR00149 Fumarate lyase superfamily signature 271 298 9.8E-34 T 29-03-2018 IPR000362 Fumarate lyase family AM354_RS02795 81767c226d749cba2b67980d932c1f4e 465 SUPERFAMILY SSF48557 4 459 2.2E-161 T 29-03-2018 IPR008948 L-Aspartase-like GO:0003824 AM354_RS02795 81767c226d749cba2b67980d932c1f4e 465 Gene3D G3DSA:1.10.40.30 418 462 7.3E-27 T 29-03-2018 AM354_RS00975 893f7f14432b92277648a45cce6fb090 390 SMART SM00028 107 140 390.0 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AM354_RS00975 893f7f14432b92277648a45cce6fb090 390 SMART SM00028 69 102 64.0 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AM354_RS00975 893f7f14432b92277648a45cce6fb090 390 SMART SM00028 141 174 360.0 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AM354_RS00975 893f7f14432b92277648a45cce6fb090 390 SMART SM00028 214 247 0.095 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AM354_RS00975 893f7f14432b92277648a45cce6fb090 390 SMART SM00028 180 213 270.0 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AM354_RS00975 893f7f14432b92277648a45cce6fb090 390 SUPERFAMILY SSF48452 42 132 2.66E-5 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS00975 893f7f14432b92277648a45cce6fb090 390 Gene3D G3DSA:1.25.40.10 119 169 1.5E-7 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS00975 893f7f14432b92277648a45cce6fb090 390 Pfam PF14559 Tetratricopeptide repeat 191 246 1.5E-7 T 29-03-2018 AM354_RS00975 893f7f14432b92277648a45cce6fb090 390 Pfam PF13432 Tetratricopeptide repeat 113 169 0.0079 T 29-03-2018 AM354_RS00975 893f7f14432b92277648a45cce6fb090 390 SUPERFAMILY SSF48452 110 262 2.62E-14 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS00975 893f7f14432b92277648a45cce6fb090 390 Pfam PF13176 Tetratricopeptide repeat 71 97 0.028 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AM354_RS00975 893f7f14432b92277648a45cce6fb090 390 Gene3D G3DSA:1.25.40.10 170 281 6.1E-11 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS00975 893f7f14432b92277648a45cce6fb090 390 Gene3D G3DSA:1.25.40.10 32 118 2.1E-9 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS00975 893f7f14432b92277648a45cce6fb090 390 Hamap MF_00994 Lipopolysaccharide assembly protein B [lapB]. 4 388 36.48 T 29-03-2018 IPR030865 Lipopolysaccharide assembly protein B GO:0008653 AM354_RS04315 d53479b6e98b564dfe6fe85a7abc56c9 562 SUPERFAMILY SSF52091 456 559 1.06E-12 T 29-03-2018 IPR002645 STAS domain AM354_RS04315 d53479b6e98b564dfe6fe85a7abc56c9 562 Pfam PF01740 STAS domain 458 556 1.7E-9 T 29-03-2018 IPR002645 STAS domain AM354_RS04315 d53479b6e98b564dfe6fe85a7abc56c9 562 TIGRFAM TIGR00815 sulP: sulfate permease 18 556 3.0E-133 T 29-03-2018 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 AM354_RS04315 d53479b6e98b564dfe6fe85a7abc56c9 562 Gene3D G3DSA:3.30.750.24 442 560 3.7E-14 T 29-03-2018 IPR002645 STAS domain AM354_RS04315 d53479b6e98b564dfe6fe85a7abc56c9 562 Pfam PF00916 Sulfate permease family 29 414 2.9E-79 T 29-03-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 AM354_RS04315 d53479b6e98b564dfe6fe85a7abc56c9 562 ProSitePatterns PS01130 SLC26A transporters signature. 58 79 - T 29-03-2018 IPR018045 Sulphate anion transporter, conserved site GO:0008271|GO:0008272 Reactome: R-HSA-427601 AM354_RS11690 41f993b16f36c8b547614ca0e27a1022 149 SUPERFAMILY SSF102400 1 143 4.45E-46 T 29-03-2018 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 AM354_RS11690 41f993b16f36c8b547614ca0e27a1022 149 Pfam PF04364 DNA polymerase III chi subunit, HolC 1 142 7.3E-39 T 29-03-2018 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 AM354_RS11690 41f993b16f36c8b547614ca0e27a1022 149 Gene3D G3DSA:3.40.50.10110 1 146 1.5E-50 T 29-03-2018 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 AM354_RS12395 23c446f926ae8b35ba27c3c58d4ff47c 325 Hamap MF_00174 Elongation factor P--(R)-beta-lysine ligase [epmA]. 2 325 56.822 T 29-03-2018 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 AM354_RS12395 23c446f926ae8b35ba27c3c58d4ff47c 325 Pfam PF00152 tRNA synthetases class II (D, K and N) 14 321 3.8E-48 T 29-03-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS12395 23c446f926ae8b35ba27c3c58d4ff47c 325 SUPERFAMILY SSF55681 13 322 5.57E-83 T 29-03-2018 AM354_RS12395 23c446f926ae8b35ba27c3c58d4ff47c 325 TIGRFAM TIGR00462 genX: EF-P lysine aminoacylase GenX 17 320 6.7E-132 T 29-03-2018 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 AM354_RS12395 23c446f926ae8b35ba27c3c58d4ff47c 325 Gene3D G3DSA:3.30.930.10 10 323 7.4E-69 T 29-03-2018 AM354_RS12395 23c446f926ae8b35ba27c3c58d4ff47c 325 PRINTS PR00982 Lysyl-tRNA synthetase signature 31 41 4.5E-6 T 29-03-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AM354_RS12395 23c446f926ae8b35ba27c3c58d4ff47c 325 PRINTS PR00982 Lysyl-tRNA synthetase signature 99 116 4.5E-6 T 29-03-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AM354_RS13385 c61074b02236b7ed3f4eae19a62d4464 498 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 8 300 9.6E-94 T 29-03-2018 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 AM354_RS13385 c61074b02236b7ed3f4eae19a62d4464 498 SUPERFAMILY SSF53067 7 128 2.89E-38 T 29-03-2018 AM354_RS13385 c61074b02236b7ed3f4eae19a62d4464 498 Gene3D G3DSA:1.10.3210.10 305 482 8.6E-4 T 29-03-2018 AM354_RS13385 c61074b02236b7ed3f4eae19a62d4464 498 Pfam PF02541 Ppx/GppA phosphatase family 21 301 5.4E-98 T 29-03-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 AM354_RS13385 c61074b02236b7ed3f4eae19a62d4464 498 PIRSF PIRSF001267 1 497 1.2E-185 T 29-03-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 AM354_RS13385 c61074b02236b7ed3f4eae19a62d4464 498 Gene3D G3DSA:3.30.420.40 1 120 6.9E-42 T 29-03-2018 AM354_RS13385 c61074b02236b7ed3f4eae19a62d4464 498 SUPERFAMILY SSF109604 307 496 6.12E-46 T 29-03-2018 AM354_RS13385 c61074b02236b7ed3f4eae19a62d4464 498 SUPERFAMILY SSF53067 132 300 1.59E-42 T 29-03-2018 AM354_RS13385 c61074b02236b7ed3f4eae19a62d4464 498 Gene3D G3DSA:3.30.420.150 121 299 1.4E-36 T 29-03-2018 AM354_RS13385 c61074b02236b7ed3f4eae19a62d4464 498 Hamap MF_01550 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [gppA]. 2 495 56.281 T 29-03-2018 IPR023709 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase GO:0008894|GO:0015974 KEGG: 00230+3.6.1.40 AM354_RS03690 af979d624751117c41571a3efcced383 251 TIGRFAM TIGR02018 his_ut_repres: histidine utilization repressor 20 248 1.6E-104 T 29-03-2018 IPR010248 Histidine utilization repressor GO:0003677|GO:0006547|GO:0045892 AM354_RS03690 af979d624751117c41571a3efcced383 251 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 58 74 1.1E-9 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS03690 af979d624751117c41571a3efcced383 251 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 44 58 1.1E-9 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS03690 af979d624751117c41571a3efcced383 251 Pfam PF00392 Bacterial regulatory proteins, gntR family 22 84 2.5E-22 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS03690 af979d624751117c41571a3efcced383 251 SMART SM00345 25 84 6.8E-21 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS03690 af979d624751117c41571a3efcced383 251 Pfam PF07702 UTRA domain 105 242 1.1E-34 T 29-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AM354_RS03690 af979d624751117c41571a3efcced383 251 SUPERFAMILY SSF46785 17 88 1.0E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS03690 af979d624751117c41571a3efcced383 251 SMART SM00866 105 242 6.5E-35 T 29-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AM354_RS03690 af979d624751117c41571a3efcced383 251 SUPERFAMILY SSF64288 72 247 1.1E-42 T 29-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AM354_RS03690 af979d624751117c41571a3efcced383 251 Gene3D G3DSA:3.40.1410.10 87 251 2.1E-39 T 29-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AM354_RS03690 af979d624751117c41571a3efcced383 251 Gene3D G3DSA:1.10.10.10 1 86 7.1E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS19420 fb87ca54f4af4c100492ca72e63bcd52 412 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 154 181 - T 29-03-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 AM354_RS19420 fb87ca54f4af4c100492ca72e63bcd52 412 Gene3D G3DSA:3.40.50.720 136 295 1.3E-40 T 29-03-2018 AM354_RS19420 fb87ca54f4af4c100492ca72e63bcd52 412 SUPERFAMILY SSF55021 337 411 2.52E-18 T 29-03-2018 AM354_RS19420 fb87ca54f4af4c100492ca72e63bcd52 412 SUPERFAMILY SSF52283 7 138 3.19E-49 T 29-03-2018 AM354_RS19420 fb87ca54f4af4c100492ca72e63bcd52 412 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 229 245 - T 29-03-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AM354_RS19420 fb87ca54f4af4c100492ca72e63bcd52 412 SUPERFAMILY SSF51735 108 295 1.54E-57 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS19420 fb87ca54f4af4c100492ca72e63bcd52 412 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 14 326 5.2E-38 T 29-03-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 AM354_RS19420 fb87ca54f4af4c100492ca72e63bcd52 412 Gene3D G3DSA:3.30.70.260 328 411 4.2E-17 T 29-03-2018 AM354_RS19420 fb87ca54f4af4c100492ca72e63bcd52 412 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 119 294 1.1E-50 T 29-03-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AM354_RS19420 fb87ca54f4af4c100492ca72e63bcd52 412 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 200 222 - T 29-03-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AM354_RS19420 fb87ca54f4af4c100492ca72e63bcd52 412 Gene3D G3DSA:3.40.50.720 1 135 4.9E-41 T 29-03-2018 AM354_RS13570 914f5d33d982505296b70a39de16eda9 399 SUPERFAMILY SSF103473 8 395 1.31E-49 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS13570 914f5d33d982505296b70a39de16eda9 399 Gene3D G3DSA:1.20.1250.20 3 193 2.4E-13 T 29-03-2018 AM354_RS13570 914f5d33d982505296b70a39de16eda9 399 Gene3D G3DSA:1.20.1250.20 207 393 3.4E-25 T 29-03-2018 AM354_RS13570 914f5d33d982505296b70a39de16eda9 399 Pfam PF07690 Major Facilitator Superfamily 24 351 3.5E-23 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS09840 fb4e9dc699cca16abccd2228d085a065 413 Pfam PF03116 NQR2, RnfD, RnfE family 41 405 1.5E-110 T 29-03-2018 IPR004338 NADH-quinone reductase NQR2/RnfD GO:0006810|GO:0016020 AM354_RS09840 fb4e9dc699cca16abccd2228d085a065 413 TIGRFAM TIGR01937 nqrB: NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit 3 408 5.0E-198 T 29-03-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0009276|GO:0010181|GO:0016021|GO:0016655|GO:0022904|GO:0055114 AM354_RS09840 fb4e9dc699cca16abccd2228d085a065 413 PIRSF PIRSF016055 1 413 1.2E-201 T 29-03-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0009276|GO:0010181|GO:0016021|GO:0016655|GO:0022904|GO:0055114 AM354_RS09840 fb4e9dc699cca16abccd2228d085a065 413 Hamap MF_00426 Na(+)-translocating NADH-quinone reductase subunit B [nqrB]. 2 412 37.176 T 29-03-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0009276|GO:0010181|GO:0016021|GO:0016655|GO:0022904|GO:0055114 AM354_RS01795 4c19d2add4b968a05dd4bb06cde4e26e 116 PIRSF PIRSF007028 1 116 7.4E-52 T 29-03-2018 IPR009874 Protein of unknown function DUF1428 AM354_RS01795 4c19d2add4b968a05dd4bb06cde4e26e 116 Gene3D G3DSA:3.30.70.100 1 116 1.4E-59 T 29-03-2018 AM354_RS01795 4c19d2add4b968a05dd4bb06cde4e26e 116 Pfam PF07237 Protein of unknown function (DUF1428) 2 102 2.4E-47 T 29-03-2018 IPR009874 Protein of unknown function DUF1428 AM354_RS01795 4c19d2add4b968a05dd4bb06cde4e26e 116 SUPERFAMILY SSF54909 1 115 4.5E-52 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel AM354_RS01550 6ba4014925c377edebcf03fe887e6728 342 Gene3D G3DSA:1.20.58.340 153 273 5.1E-13 T 29-03-2018 AM354_RS01550 6ba4014925c377edebcf03fe887e6728 342 Pfam PF01544 CorA-like Mg2+ transporter protein 52 333 1.2E-51 T 29-03-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 AM354_RS01550 6ba4014925c377edebcf03fe887e6728 342 SUPERFAMILY SSF143865 44 269 8.5E-41 T 29-03-2018 AM354_RS01550 6ba4014925c377edebcf03fe887e6728 342 Gene3D G3DSA:1.20.58.340 274 341 1.9E-13 T 29-03-2018 AM354_RS01550 6ba4014925c377edebcf03fe887e6728 342 SUPERFAMILY SSF144083 277 338 3.4E-14 T 29-03-2018 AM354_RS01550 6ba4014925c377edebcf03fe887e6728 342 Gene3D G3DSA:3.30.460.20 7 152 1.4E-18 T 29-03-2018 AM354_RS15555 76c317d6cc5ee7e1e08d53f92621f37f 904 SUPERFAMILY SSF46894 829 895 2.58E-17 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS15555 76c317d6cc5ee7e1e08d53f92621f37f 904 Gene3D G3DSA:1.10.10.10 836 897 1.2E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS15555 76c317d6cc5ee7e1e08d53f92621f37f 904 Hamap MF_01247 HTH-type transcriptional regulator MalT [malT]. 1 902 37.251 T 29-03-2018 IPR023768 Transcriptional regulator HTH-type, MalT AM354_RS15555 76c317d6cc5ee7e1e08d53f92621f37f 904 Gene3D G3DSA:1.25.40.10 445 811 1.9E-45 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS15555 76c317d6cc5ee7e1e08d53f92621f37f 904 Gene3D G3DSA:3.40.50.300 14 294 3.4E-6 T 29-03-2018 AM354_RS15555 76c317d6cc5ee7e1e08d53f92621f37f 904 Pfam PF00196 Bacterial regulatory proteins, luxR family 838 891 2.1E-19 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS15555 76c317d6cc5ee7e1e08d53f92621f37f 904 SMART SM00421 836 893 7.9E-21 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS15555 76c317d6cc5ee7e1e08d53f92621f37f 904 SUPERFAMILY SSF48452 441 806 2.11E-158 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS15555 76c317d6cc5ee7e1e08d53f92621f37f 904 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 853 869 2.2E-10 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS15555 76c317d6cc5ee7e1e08d53f92621f37f 904 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 869 881 2.2E-10 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS15555 76c317d6cc5ee7e1e08d53f92621f37f 904 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 839 853 2.2E-10 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS15555 76c317d6cc5ee7e1e08d53f92621f37f 904 SUPERFAMILY SSF52540 7 226 2.27E-6 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS15555 76c317d6cc5ee7e1e08d53f92621f37f 904 ProSitePatterns PS00622 LuxR-type HTH domain signature. 853 880 - T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS15725 a22dd712c872f6b14d0d3b253e8403e8 225 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 33 47 - T 29-03-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AM354_RS15725 a22dd712c872f6b14d0d3b253e8403e8 225 Gene3D G3DSA:3.20.20.70 1 220 1.2E-85 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS15725 a22dd712c872f6b14d0d3b253e8403e8 225 SUPERFAMILY SSF51366 3 218 1.36E-75 T 29-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 AM354_RS15725 a22dd712c872f6b14d0d3b253e8403e8 225 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 136 158 - T 29-03-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AM354_RS15725 a22dd712c872f6b14d0d3b253e8403e8 225 PIRSF PIRSF001461 1 225 8.3E-107 T 29-03-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AM354_RS15725 a22dd712c872f6b14d0d3b253e8403e8 225 Pfam PF00834 Ribulose-phosphate 3 epimerase family 6 203 3.6E-92 T 29-03-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AM354_RS15725 a22dd712c872f6b14d0d3b253e8403e8 225 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 5 216 2.7E-97 T 29-03-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AM354_RS17065 3cacfe231ed26f14b43af29c86040c7c 243 TIGRFAM TIGR02070 mono_pep_trsgly: monofunctional biosynthetic peptidoglycan transglycosylase 21 232 2.6E-82 T 29-03-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 AM354_RS17065 3cacfe231ed26f14b43af29c86040c7c 243 Pfam PF00912 Transglycosylase 62 228 3.2E-49 T 29-03-2018 IPR001264 Glycosyl transferase, family 51 AM354_RS17065 3cacfe231ed26f14b43af29c86040c7c 243 Hamap MF_00766 Monofunctional biosynthetic peptidoglycan transglycosylase [mtgA]. 9 234 41.805 T 29-03-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 AM354_RS17065 3cacfe231ed26f14b43af29c86040c7c 243 SUPERFAMILY SSF53955 56 232 7.59E-59 T 29-03-2018 IPR023346 Lysozyme-like domain AM354_RS17065 3cacfe231ed26f14b43af29c86040c7c 243 Gene3D G3DSA:1.10.3810.10 49 235 7.6E-55 T 29-03-2018 IPR001264 Glycosyl transferase, family 51 AM354_RS03115 81d691180b0c63c9c3004aebd9037d9c 192 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 4.9E-22 T 29-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM354_RS03115 81d691180b0c63c9c3004aebd9037d9c 192 PRINTS PR01703 Manganese superoxide dismutase signature 65 78 4.9E-22 T 29-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM354_RS03115 81d691180b0c63c9c3004aebd9037d9c 192 PRINTS PR01703 Manganese superoxide dismutase signature 118 126 4.9E-22 T 29-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM354_RS03115 81d691180b0c63c9c3004aebd9037d9c 192 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 4.9E-22 T 29-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM354_RS03115 81d691180b0c63c9c3004aebd9037d9c 192 PRINTS PR01703 Manganese superoxide dismutase signature 155 167 4.9E-22 T 29-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM354_RS03115 81d691180b0c63c9c3004aebd9037d9c 192 SUPERFAMILY SSF46609 1 84 2.36E-35 T 29-03-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM354_RS03115 81d691180b0c63c9c3004aebd9037d9c 192 SUPERFAMILY SSF54719 82 191 1.57E-43 T 29-03-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM354_RS03115 81d691180b0c63c9c3004aebd9037d9c 192 Gene3D G3DSA:1.10.287.990 20 82 2.2E-26 T 29-03-2018 AM354_RS03115 81d691180b0c63c9c3004aebd9037d9c 192 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 82 2.2E-34 T 29-03-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM354_RS03115 81d691180b0c63c9c3004aebd9037d9c 192 PIRSF PIRSF000349 1 192 2.3E-85 T 29-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM354_RS03115 81d691180b0c63c9c3004aebd9037d9c 192 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 157 164 - T 29-03-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM354_RS03115 81d691180b0c63c9c3004aebd9037d9c 192 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 89 189 8.8E-40 T 29-03-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM354_RS12030 5b8cda0f72f6ba337267ef4b6af7fbb9 643 Gene3D G3DSA:1.10.8.60 332 411 8.2E-25 T 29-03-2018 AM354_RS12030 5b8cda0f72f6ba337267ef4b6af7fbb9 643 ProSitePatterns PS00674 AAA-protein family signature. 291 309 - T 29-03-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 AM354_RS12030 5b8cda0f72f6ba337267ef4b6af7fbb9 643 Pfam PF01434 Peptidase family M41 382 591 7.4E-82 T 29-03-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 AM354_RS12030 5b8cda0f72f6ba337267ef4b6af7fbb9 643 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 100 593 2.2E-247 T 29-03-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 AM354_RS12030 5b8cda0f72f6ba337267ef4b6af7fbb9 643 Pfam PF06480 FtsH Extracellular 5 93 6.4E-16 T 29-03-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 AM354_RS12030 5b8cda0f72f6ba337267ef4b6af7fbb9 643 Gene3D G3DSA:3.40.50.300 128 331 4.0E-63 T 29-03-2018 AM354_RS12030 5b8cda0f72f6ba337267ef4b6af7fbb9 643 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 3 608 37.398 T 29-03-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 AM354_RS12030 5b8cda0f72f6ba337267ef4b6af7fbb9 643 SUPERFAMILY SSF140990 402 601 1.57E-72 T 29-03-2018 AM354_RS12030 5b8cda0f72f6ba337267ef4b6af7fbb9 643 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 188 320 6.4E-46 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AM354_RS12030 5b8cda0f72f6ba337267ef4b6af7fbb9 643 SMART SM00382 184 323 1.9E-26 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS12030 5b8cda0f72f6ba337267ef4b6af7fbb9 643 SUPERFAMILY SSF52540 141 391 1.31E-72 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS14680 ec616a2bf12e4def1f98aab774cfae23 123 ProDom PD076479 MEMBRANE INNER YIJD TRANSMEMBRANE Y0323 AAA SIMILAR A ACETYL-COENZYME VV0128 2 114 3.0E-47 T 29-03-2018 IPR009867 Protein of unknown function DUF1422 AM354_RS14680 ec616a2bf12e4def1f98aab774cfae23 123 Pfam PF07226 Protein of unknown function (DUF1422) 3 114 6.4E-57 T 29-03-2018 IPR009867 Protein of unknown function DUF1422 AM354_RS06420 ae3352fcc57879e68c8d30527b37ece3 294 PIRSF PIRSF006334 14 294 4.7E-108 T 29-03-2018 AM354_RS06420 ae3352fcc57879e68c8d30527b37ece3 294 Gene3D G3DSA:3.40.140.10 183 294 9.4E-17 T 29-03-2018 AM354_RS06420 ae3352fcc57879e68c8d30527b37ece3 294 TIGRFAM TIGR01355 cyt_deam_dimer: cytidine deaminase 30 285 4.8E-86 T 29-03-2018 IPR006263 Cytidine deaminase, homodimeric GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 AM354_RS06420 ae3352fcc57879e68c8d30527b37ece3 294 SUPERFAMILY SSF53927 153 289 2.01E-40 T 29-03-2018 IPR016193 Cytidine deaminase-like GO:0003824 AM354_RS06420 ae3352fcc57879e68c8d30527b37ece3 294 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 62 139 3.6E-11 T 29-03-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain AM354_RS06420 ae3352fcc57879e68c8d30527b37ece3 294 Gene3D G3DSA:3.40.140.10 36 174 7.2E-26 T 29-03-2018 AM354_RS06420 ae3352fcc57879e68c8d30527b37ece3 294 Hamap MF_01558 Cytidine deaminase [cdd]. 1 293 49.476 T 29-03-2018 IPR020797 Cytidine deaminase, bacteria GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 AM354_RS06420 ae3352fcc57879e68c8d30527b37ece3 294 SUPERFAMILY SSF53927 1 147 5.35E-40 T 29-03-2018 IPR016193 Cytidine deaminase-like GO:0003824 AM354_RS06420 ae3352fcc57879e68c8d30527b37ece3 294 Pfam PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region 157 278 4.9E-45 T 29-03-2018 IPR013171 Cytidine/deoxycytidylate deaminase, zinc-binding domain GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 AM354_RS06420 ae3352fcc57879e68c8d30527b37ece3 294 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 102 136 - T 29-03-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 AM354_RS14500 6ff3e50440ab1b726026e820209034b8 320 Gene3D G3DSA:3.40.50.450 1 209 4.4E-83 T 29-03-2018 AM354_RS14500 6ff3e50440ab1b726026e820209034b8 320 SUPERFAMILY SSF53784 3 310 7.32E-114 T 29-03-2018 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AM354_RS14500 6ff3e50440ab1b726026e820209034b8 320 PIRSF PIRSF000532 1 320 9.8E-132 T 29-03-2018 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type GO:0005524|GO:0006002|GO:0006096|GO:0008443 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 AM354_RS14500 6ff3e50440ab1b726026e820209034b8 320 Hamap MF_00339 ATP-dependent 6-phosphofructokinase [pfkA]. 2 320 46.889 T 29-03-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 AM354_RS14500 6ff3e50440ab1b726026e820209034b8 320 Gene3D G3DSA:3.40.50.450 210 307 1.7E-9 T 29-03-2018 AM354_RS14500 6ff3e50440ab1b726026e820209034b8 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 32 45 6.9E-83 T 29-03-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AM354_RS14500 6ff3e50440ab1b726026e820209034b8 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 139 157 6.9E-83 T 29-03-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AM354_RS14500 6ff3e50440ab1b726026e820209034b8 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 159 175 6.9E-83 T 29-03-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AM354_RS14500 6ff3e50440ab1b726026e820209034b8 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 121 138 6.9E-83 T 29-03-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AM354_RS14500 6ff3e50440ab1b726026e820209034b8 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 94 110 6.9E-83 T 29-03-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AM354_RS14500 6ff3e50440ab1b726026e820209034b8 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 240 262 6.9E-83 T 29-03-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AM354_RS14500 6ff3e50440ab1b726026e820209034b8 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 213 225 6.9E-83 T 29-03-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AM354_RS14500 6ff3e50440ab1b726026e820209034b8 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 7 26 6.9E-83 T 29-03-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AM354_RS14500 6ff3e50440ab1b726026e820209034b8 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 177 194 6.9E-83 T 29-03-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AM354_RS14500 6ff3e50440ab1b726026e820209034b8 320 ProSitePatterns PS00433 Phosphofructokinase signature. 244 262 - T 29-03-2018 IPR015912 Phosphofructokinase, conserved site GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AM354_RS14500 6ff3e50440ab1b726026e820209034b8 320 TIGRFAM TIGR02482 PFKA_ATP: 6-phosphofructokinase 4 301 1.0E-126 T 29-03-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 AM354_RS14500 6ff3e50440ab1b726026e820209034b8 320 Pfam PF00365 Phosphofructokinase 4 276 3.3E-109 T 29-03-2018 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AM354_RS23575 07f4af45bbdeaa128ac6e809d0457e99 236 SMART SM00014 95 210 1.7E-14 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM354_RS23575 07f4af45bbdeaa128ac6e809d0457e99 236 Gene3D G3DSA:1.20.144.10 17 216 9.1E-10 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM354_RS23575 07f4af45bbdeaa128ac6e809d0457e99 236 Pfam PF01569 PAP2 superfamily 110 208 4.8E-9 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM354_RS23575 07f4af45bbdeaa128ac6e809d0457e99 236 Hamap MF_01945 Lipid A 1-diphosphate synthase [lpxT]. 2 233 42.428 T 29-03-2018 IPR032908 Lipid A 1-diphosphate synthase GO:0005886|GO:0043165|GO:0050380 AM354_RS23575 07f4af45bbdeaa128ac6e809d0457e99 236 SUPERFAMILY SSF48317 7 213 1.7E-22 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM354_RS07850 9167bd885a316a7fffb06b5dd32df58d 347 SUPERFAMILY SSF74650 3 344 3.45E-102 T 29-03-2018 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 AM354_RS07850 9167bd885a316a7fffb06b5dd32df58d 347 Pfam PF01263 Aldose 1-epimerase 18 343 1.1E-80 T 29-03-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 AM354_RS07850 9167bd885a316a7fffb06b5dd32df58d 347 ProSitePatterns PS00545 Aldose 1-epimerase putative active site. 171 180 - T 29-03-2018 IPR018052 Aldose 1-epimerase, conserved site KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 AM354_RS07850 9167bd885a316a7fffb06b5dd32df58d 347 PIRSF PIRSF005096 1 346 6.9E-114 T 29-03-2018 IPR015443 Aldose 1-epimerase GO:0016853|GO:0019318 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 AM354_RS07850 9167bd885a316a7fffb06b5dd32df58d 347 TIGRFAM TIGR02636 galM_Leloir: galactose mutarotase 12 344 8.1E-137 T 29-03-2018 IPR013458 Aldose 1-epimerase, bacterial GO:0004034|GO:0006012 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 AM354_RS07850 9167bd885a316a7fffb06b5dd32df58d 347 Gene3D G3DSA:2.70.98.10 4 345 2.2E-100 T 29-03-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 AM354_RS09005 713244b26e160b3d01c49c45f02fde2a 287 Gene3D G3DSA:3.10.129.10 2 116 2.7E-44 T 29-03-2018 AM354_RS09005 713244b26e160b3d01c49c45f02fde2a 287 TIGRFAM TIGR00189 tesB: acyl-CoA thioesterase II 12 283 1.1E-105 T 29-03-2018 IPR003703 Acyl-CoA thioesterase GO:0006637|GO:0047617 Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247 AM354_RS09005 713244b26e160b3d01c49c45f02fde2a 287 Pfam PF13622 Thioesterase-like superfamily 33 282 2.1E-61 T 29-03-2018 AM354_RS09005 713244b26e160b3d01c49c45f02fde2a 287 SUPERFAMILY SSF54637 5 114 1.0E-42 T 29-03-2018 IPR029069 HotDog domain AM354_RS09005 713244b26e160b3d01c49c45f02fde2a 287 Gene3D G3DSA:3.10.129.10 131 286 1.5E-58 T 29-03-2018 AM354_RS09005 713244b26e160b3d01c49c45f02fde2a 287 SUPERFAMILY SSF54637 116 283 2.75E-63 T 29-03-2018 IPR029069 HotDog domain AM354_RS22910 9c5f2005eb977cdaf1fa8a7f6341bcc0 143 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 7 137 3.0E-20 T 29-03-2018 IPR009936 Protein of unknown function DUF1468 AM354_RS01115 5da0cb42265ea5cd5cd2cb28b20a67be 387 Gene3D G3DSA:3.40.630.10 1 258 7.4E-51 T 29-03-2018 AM354_RS01115 5da0cb42265ea5cd5cd2cb28b20a67be 387 Gene3D G3DSA:3.40.630.10 259 387 5.0E-20 T 29-03-2018 AM354_RS01115 5da0cb42265ea5cd5cd2cb28b20a67be 387 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 13 371 1.9E-105 T 29-03-2018 IPR017439 Amidohydrolase GO:0016787 AM354_RS01115 5da0cb42265ea5cd5cd2cb28b20a67be 387 Pfam PF01546 Peptidase family M20/M25/M40 72 383 4.9E-35 T 29-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AM354_RS01115 5da0cb42265ea5cd5cd2cb28b20a67be 387 Pfam PF07687 Peptidase dimerisation domain 184 280 3.1E-13 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain AM354_RS01115 5da0cb42265ea5cd5cd2cb28b20a67be 387 SUPERFAMILY SSF53187 297 386 1.26E-85 T 29-03-2018 AM354_RS01115 5da0cb42265ea5cd5cd2cb28b20a67be 387 SUPERFAMILY SSF53187 2 196 1.26E-85 T 29-03-2018 AM354_RS01115 5da0cb42265ea5cd5cd2cb28b20a67be 387 PIRSF PIRSF005962 1 387 2.8E-125 T 29-03-2018 IPR017439 Amidohydrolase GO:0016787 AM354_RS01115 5da0cb42265ea5cd5cd2cb28b20a67be 387 SUPERFAMILY SSF55031 182 294 1.7E-29 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain AM354_RS14410 b09bc27c7c3b2864277a62e266321a6b 309 TIGRFAM TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase 2 307 5.8E-136 T 29-03-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 AM354_RS14410 b09bc27c7c3b2864277a62e266321a6b 309 SUPERFAMILY SSF51735 1 305 1.42E-63 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS14410 b09bc27c7c3b2864277a62e266321a6b 309 Hamap MF_01601 ADP-L-glycero-D-manno-heptose-6-epimerase [hldD]. 1 308 48.504 T 29-03-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 AM354_RS14410 b09bc27c7c3b2864277a62e266321a6b 309 Gene3D G3DSA:3.40.50.720 1 181 2.3E-21 T 29-03-2018 AM354_RS14410 b09bc27c7c3b2864277a62e266321a6b 309 Gene3D G3DSA:3.90.25.10 182 309 3.9E-20 T 29-03-2018 AM354_RS14410 b09bc27c7c3b2864277a62e266321a6b 309 Pfam PF01370 NAD dependent epimerase/dehydratase family 2 235 6.6E-47 T 29-03-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AM354_RS11235 6a48a63297dcebb0b43e92f5e6d1d723 456 TIGRFAM TIGR02332 HpaX: 4-hydroxyphenylacetate permease 26 437 5.9E-252 T 29-03-2018 IPR012707 4-hydroxyphenylacetate permease GO:1900754|GO:1901241 AM354_RS11235 6a48a63297dcebb0b43e92f5e6d1d723 456 Gene3D G3DSA:1.20.1250.20 22 232 4.9E-37 T 29-03-2018 AM354_RS11235 6a48a63297dcebb0b43e92f5e6d1d723 456 Gene3D G3DSA:1.20.1250.20 257 455 2.0E-23 T 29-03-2018 AM354_RS11235 6a48a63297dcebb0b43e92f5e6d1d723 456 Pfam PF07690 Major Facilitator Superfamily 38 400 1.3E-46 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS11235 6a48a63297dcebb0b43e92f5e6d1d723 456 SUPERFAMILY SSF103473 17 448 1.57E-84 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS09330 c2d6ae9a7c57224fc597e989d85465d9 128 Gene3D G3DSA:3.40.50.1010 1 127 1.6E-18 T 29-03-2018 IPR029060 PIN domain-like AM354_RS09330 c2d6ae9a7c57224fc597e989d85465d9 128 Pfam PF01850 PIN domain 5 120 8.2E-13 T 29-03-2018 IPR002716 PIN domain AM354_RS09330 c2d6ae9a7c57224fc597e989d85465d9 128 SUPERFAMILY SSF88723 1 123 5.89E-20 T 29-03-2018 IPR029060 PIN domain-like AM354_RS21010 958ef3cf609f21e61c72e402bcdd8fec 319 Pfam PF03888 MucB/RseB N-terminal domain 29 197 2.4E-60 T 29-03-2018 IPR033434 MucB/RseB, N-terminal AM354_RS21010 958ef3cf609f21e61c72e402bcdd8fec 319 Gene3D G3DSA:2.50.20.10 20 222 3.2E-20 T 29-03-2018 AM354_RS21010 958ef3cf609f21e61c72e402bcdd8fec 319 Pfam PF17188 MucB/RseB C-terminal domain 220 312 9.8E-27 T 29-03-2018 IPR033436 MucB/RseB, C-terminal AM354_RS21010 958ef3cf609f21e61c72e402bcdd8fec 319 PIRSF PIRSF005427 2 319 1.2E-89 T 29-03-2018 IPR005588 MucB/RseB AM354_RS04270 4c602b254aa6be150dc2283bcbcc7069 347 PIRSF PIRSF019574 1 347 5.4E-128 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM354_RS04270 4c602b254aa6be150dc2283bcbcc7069 347 Gene3D G3DSA:3.40.190.10 144 299 3.2E-37 T 29-03-2018 AM354_RS04270 4c602b254aa6be150dc2283bcbcc7069 347 SUPERFAMILY SSF53850 25 344 8.61E-94 T 29-03-2018 AM354_RS04270 4c602b254aa6be150dc2283bcbcc7069 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 292 318 5.3E-93 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM354_RS04270 4c602b254aa6be150dc2283bcbcc7069 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 91 104 5.3E-93 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM354_RS04270 4c602b254aa6be150dc2283bcbcc7069 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 148 162 5.3E-93 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM354_RS04270 4c602b254aa6be150dc2283bcbcc7069 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 75 89 5.3E-93 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM354_RS04270 4c602b254aa6be150dc2283bcbcc7069 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 47 68 5.3E-93 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM354_RS04270 4c602b254aa6be150dc2283bcbcc7069 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 166 185 5.3E-93 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM354_RS04270 4c602b254aa6be150dc2283bcbcc7069 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 31 47 5.3E-93 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM354_RS04270 4c602b254aa6be150dc2283bcbcc7069 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 122 138 5.3E-93 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM354_RS04270 4c602b254aa6be150dc2283bcbcc7069 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 203 222 5.3E-93 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM354_RS04270 4c602b254aa6be150dc2283bcbcc7069 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 247 266 5.3E-93 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM354_RS04270 4c602b254aa6be150dc2283bcbcc7069 347 Gene3D G3DSA:3.40.190.10 24 143 4.6E-16 T 29-03-2018 AM354_RS04270 4c602b254aa6be150dc2283bcbcc7069 347 Pfam PF13416 Bacterial extracellular solute-binding protein 41 311 1.0E-37 T 29-03-2018 AM354_RS23040 05bd060f44ac69bdcc5be9aec42627c8 339 ProSitePatterns PS00356 LacI-type HTH domain signature. 15 33 - T 29-03-2018 AM354_RS23040 05bd060f44ac69bdcc5be9aec42627c8 339 Pfam PF13377 Periplasmic binding protein-like domain 181 339 3.3E-27 T 29-03-2018 AM354_RS23040 05bd060f44ac69bdcc5be9aec42627c8 339 Gene3D G3DSA:3.40.50.2300 66 185 1.2E-27 T 29-03-2018 AM354_RS23040 05bd060f44ac69bdcc5be9aec42627c8 339 Gene3D G3DSA:1.10.260.40 13 65 8.2E-20 T 29-03-2018 AM354_RS23040 05bd060f44ac69bdcc5be9aec42627c8 339 SUPERFAMILY SSF47413 12 70 1.69E-16 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS23040 05bd060f44ac69bdcc5be9aec42627c8 339 Gene3D G3DSA:3.40.50.2300 186 323 2.6E-30 T 29-03-2018 AM354_RS23040 05bd060f44ac69bdcc5be9aec42627c8 339 SUPERFAMILY SSF53822 72 339 1.99E-51 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS23040 05bd060f44ac69bdcc5be9aec42627c8 339 SMART SM00354 12 82 5.2E-29 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS23040 05bd060f44ac69bdcc5be9aec42627c8 339 Pfam PF00356 Bacterial regulatory proteins, lacI family 14 59 1.2E-18 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS21305 09154767f89df30a3fcc77f1c6561545 206 Gene3D G3DSA:1.25.40.10 37 201 8.6E-9 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS21305 09154767f89df30a3fcc77f1c6561545 206 PIRSF PIRSF006170 1 206 4.8E-57 T 29-03-2018 IPR026039 Uncharacterised protein family UPF0070 AM354_RS21305 09154767f89df30a3fcc77f1c6561545 206 Pfam PF09976 Tetratricopeptide repeat-like domain 15 205 5.3E-58 T 29-03-2018 IPR018704 Tetratricopeptide repeat-like domain Reactome: R-HSA-192823|Reactome: R-HSA-381038|Reactome: R-HSA-381426|Reactome: R-HSA-6798695|Reactome: R-HSA-8957275 AM354_RS21305 09154767f89df30a3fcc77f1c6561545 206 SUPERFAMILY SSF48452 89 191 6.07E-6 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS03825 19a00543638c6604694091240dcd1b90 138 SUPERFAMILY SSF102462 6 138 3.71E-23 T 29-03-2018 IPR023476 Peptidyl-tRNA hydrolase II domain MetaCyc: PWY-6308 AM354_RS03825 19a00543638c6604694091240dcd1b90 138 Pfam PF09391 Protein of unknown function (DUF2000) 7 138 1.2E-25 T 29-03-2018 IPR018988 Protein of unknown function DUF2000 AM354_RS03825 19a00543638c6604694091240dcd1b90 138 Gene3D G3DSA:3.40.1490.10 7 136 2.6E-28 T 29-03-2018 IPR023476 Peptidyl-tRNA hydrolase II domain MetaCyc: PWY-6308 AM354_RS00285 589ae397a981f2e8978d6b986848d34b 644 Gene3D G3DSA:3.40.50.300 61 354 3.6E-14 T 29-03-2018 AM354_RS00285 589ae397a981f2e8978d6b986848d34b 644 Pfam PF08298 PrkA AAA domain 20 380 9.2E-177 T 29-03-2018 IPR013153 PrkA AAA domain AM354_RS00285 589ae397a981f2e8978d6b986848d34b 644 SUPERFAMILY SSF52540 75 145 3.09E-17 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS00285 589ae397a981f2e8978d6b986848d34b 644 SUPERFAMILY SSF52540 246 368 3.09E-17 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS00285 589ae397a981f2e8978d6b986848d34b 644 PIRSF PIRSF000549 1 644 2.9E-289 T 29-03-2018 IPR016230 Serine-protein kinase, PrkA GO:0004672 AM354_RS00285 589ae397a981f2e8978d6b986848d34b 644 SMART SM00763 19 380 8.3E-217 T 29-03-2018 IPR013153 PrkA AAA domain AM354_RS00285 589ae397a981f2e8978d6b986848d34b 644 Pfam PF06798 PrkA serine protein kinase C-terminal domain 383 636 1.7E-73 T 29-03-2018 IPR010650 PrkA C-terminal domain AM354_RS15995 b2739551f4f475630e6298f9ff66d9dc 159 Gene3D G3DSA:1.20.1260.10 1 151 4.2E-40 T 29-03-2018 IPR012347 Ferritin-related AM354_RS15995 b2739551f4f475630e6298f9ff66d9dc 159 PRINTS PR00601 Bacterioferritin signature 65 85 7.8E-77 T 29-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AM354_RS15995 b2739551f4f475630e6298f9ff66d9dc 159 PRINTS PR00601 Bacterioferritin signature 107 127 7.8E-77 T 29-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AM354_RS15995 b2739551f4f475630e6298f9ff66d9dc 159 PRINTS PR00601 Bacterioferritin signature 128 149 7.8E-77 T 29-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AM354_RS15995 b2739551f4f475630e6298f9ff66d9dc 159 PRINTS PR00601 Bacterioferritin signature 3 22 7.8E-77 T 29-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AM354_RS15995 b2739551f4f475630e6298f9ff66d9dc 159 PRINTS PR00601 Bacterioferritin signature 44 64 7.8E-77 T 29-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AM354_RS15995 b2739551f4f475630e6298f9ff66d9dc 159 PRINTS PR00601 Bacterioferritin signature 86 106 7.8E-77 T 29-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AM354_RS15995 b2739551f4f475630e6298f9ff66d9dc 159 PRINTS PR00601 Bacterioferritin signature 23 43 7.8E-77 T 29-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AM354_RS15995 b2739551f4f475630e6298f9ff66d9dc 159 PIRSF PIRSF002560 1 157 1.8E-70 T 29-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AM354_RS15995 b2739551f4f475630e6298f9ff66d9dc 159 Pfam PF00210 Ferritin-like domain 8 143 2.8E-39 T 29-03-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 AM354_RS15995 b2739551f4f475630e6298f9ff66d9dc 159 SUPERFAMILY SSF47240 1 153 2.29E-53 T 29-03-2018 IPR009078 Ferritin-like superfamily AM354_RS15995 b2739551f4f475630e6298f9ff66d9dc 159 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 29-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AM354_RS15995 b2739551f4f475630e6298f9ff66d9dc 159 TIGRFAM TIGR00754 bfr: bacterioferritin 1 156 3.4E-80 T 29-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AM354_RS11320 ede2acf2263bed28cf5a0ba770b9b4b0 395 Gene3D G3DSA:1.20.1250.20 14 194 1.9E-12 T 29-03-2018 AM354_RS11320 ede2acf2263bed28cf5a0ba770b9b4b0 395 Gene3D G3DSA:1.20.1250.20 209 391 6.0E-10 T 29-03-2018 AM354_RS11320 ede2acf2263bed28cf5a0ba770b9b4b0 395 SUPERFAMILY SSF103473 21 389 1.07E-29 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS02690 8d5c3649bb631f71cf07af66eba00f16 249 Pfam PF00106 short chain dehydrogenase 2 187 2.1E-54 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS02690 8d5c3649bb631f71cf07af66eba00f16 249 SUPERFAMILY SSF51735 3 229 3.34E-63 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS02690 8d5c3649bb631f71cf07af66eba00f16 249 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 134 162 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM354_RS02690 8d5c3649bb631f71cf07af66eba00f16 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 202 222 4.6E-21 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS02690 8d5c3649bb631f71cf07af66eba00f16 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 4.6E-21 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS02690 8d5c3649bb631f71cf07af66eba00f16 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 4.6E-21 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS02690 8d5c3649bb631f71cf07af66eba00f16 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 4.6E-21 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS02690 8d5c3649bb631f71cf07af66eba00f16 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 4.6E-21 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS02690 8d5c3649bb631f71cf07af66eba00f16 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 4.6E-21 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS02690 8d5c3649bb631f71cf07af66eba00f16 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 1.1E-8 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS02690 8d5c3649bb631f71cf07af66eba00f16 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 1.1E-8 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS02690 8d5c3649bb631f71cf07af66eba00f16 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 73 84 1.1E-8 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS02690 8d5c3649bb631f71cf07af66eba00f16 249 Gene3D G3DSA:3.40.50.720 1 235 4.0E-61 T 29-03-2018 AM354_RS18535 8c064bed200261e422efcb9ced1fe569 91 Gene3D G3DSA:3.30.70.100 20 91 5.7E-24 T 29-03-2018 AM354_RS18535 8c064bed200261e422efcb9ced1fe569 91 Pfam PF00403 Heavy-metal-associated domain 25 85 7.8E-17 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AM354_RS18535 8c064bed200261e422efcb9ced1fe569 91 PRINTS PR00946 Mercury scavenger protein signature 76 90 2.7E-57 T 29-03-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 AM354_RS18535 8c064bed200261e422efcb9ced1fe569 91 PRINTS PR00946 Mercury scavenger protein signature 2 20 2.7E-57 T 29-03-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 AM354_RS18535 8c064bed200261e422efcb9ced1fe569 91 PRINTS PR00946 Mercury scavenger protein signature 31 47 2.7E-57 T 29-03-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 AM354_RS18535 8c064bed200261e422efcb9ced1fe569 91 PRINTS PR00946 Mercury scavenger protein signature 47 62 2.7E-57 T 29-03-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 AM354_RS18535 8c064bed200261e422efcb9ced1fe569 91 PRINTS PR00946 Mercury scavenger protein signature 62 76 2.7E-57 T 29-03-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 AM354_RS18535 8c064bed200261e422efcb9ced1fe569 91 PRINTS PR00946 Mercury scavenger protein signature 20 31 2.7E-57 T 29-03-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 AM354_RS18535 8c064bed200261e422efcb9ced1fe569 91 SUPERFAMILY SSF55008 17 89 1.57E-22 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AM354_RS18535 8c064bed200261e422efcb9ced1fe569 91 TIGRFAM TIGR02052 MerP: mercuric transport protein periplasmic component 1 91 2.5E-44 T 29-03-2018 IPR011795 Mercuric transport protein periplasmic component GO:0015097|GO:0015694|GO:0042597|GO:0045340|GO:0046689 AM354_RS18535 8c064bed200261e422efcb9ced1fe569 91 ProSitePatterns PS01047 Heavy-metal-associated domain. 28 57 - T 29-03-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 AM354_RS14355 8dc08a9b805ebed1e52ef2b9b1a066c3 337 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 82 325 1.8E-23 T 29-03-2018 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 AM354_RS14355 8dc08a9b805ebed1e52ef2b9b1a066c3 337 Gene3D G3DSA:3.40.50.2000 1 159 3.9E-26 T 29-03-2018 AM354_RS14355 8dc08a9b805ebed1e52ef2b9b1a066c3 337 Gene3D G3DSA:3.40.50.2000 170 337 9.2E-34 T 29-03-2018 AM354_RS14355 8dc08a9b805ebed1e52ef2b9b1a066c3 337 SUPERFAMILY SSF53756 2 335 5.65E-63 T 29-03-2018 AM354_RS16620 bc60e42dfaf3e900504315a981ecb241 306 TIGRFAM TIGR02207 lipid_A_htrB: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 6 306 3.1E-137 T 29-03-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 KEGG: 00600+2.3.1.24 AM354_RS16620 bc60e42dfaf3e900504315a981ecb241 306 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 4 306 50.543 T 29-03-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 KEGG: 00600+2.3.1.24 AM354_RS16620 bc60e42dfaf3e900504315a981ecb241 306 Hamap MF_01943 Lipid A biosynthesis palmitoleoyltransferase [lpxP]. 3 306 69.001 T 29-03-2018 IPR030857 Lipid A biosynthesis palmitoleoyltransferase, LpxP GO:0008951|GO:0009409|GO:0036104 KEGG: 00600+2.3.1.24 AM354_RS16620 bc60e42dfaf3e900504315a981ecb241 306 PIRSF PIRSF026649 2 306 4.3E-97 T 29-03-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 AM354_RS16620 bc60e42dfaf3e900504315a981ecb241 306 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 5 297 1.5E-100 T 29-03-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 AM354_RS09335 ccb4a2980bff1b9b57f7410000b4131d 77 Gene3D G3DSA:3.40.1620.10 1 40 2.1E-13 T 29-03-2018 AM354_RS09335 ccb4a2980bff1b9b57f7410000b4131d 77 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 7 40 1.5E-5 T 29-03-2018 AM354_RS09335 ccb4a2980bff1b9b57f7410000b4131d 77 SUPERFAMILY SSF143120 5 44 3.66E-9 T 29-03-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM AM354_RS09335 ccb4a2980bff1b9b57f7410000b4131d 77 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 6 42 4.1E-8 T 29-03-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM AM354_RS04795 1de7bac7003c941bc228d45edcda8a07 335 Gene3D G3DSA:1.10.8.10 169 206 1.1E-13 T 29-03-2018 AM354_RS04795 1de7bac7003c941bc228d45edcda8a07 335 Pfam PF13177 DNA polymerase III, delta subunit 10 164 1.3E-43 T 29-03-2018 AM354_RS04795 1de7bac7003c941bc228d45edcda8a07 335 SUPERFAMILY SSF48019 209 324 1.04E-37 T 29-03-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 AM354_RS04795 1de7bac7003c941bc228d45edcda8a07 335 Gene3D G3DSA:1.20.272.10 208 328 8.8E-23 T 29-03-2018 AM354_RS04795 1de7bac7003c941bc228d45edcda8a07 335 Pfam PF09115 DNA polymerase III, delta subunit, C terminal 207 322 3.3E-46 T 29-03-2018 IPR015199 DNA polymerase III, delta subunit, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS04795 1de7bac7003c941bc228d45edcda8a07 335 TIGRFAM TIGR00678 holB: DNA polymerase III, delta' subunit 12 201 4.0E-61 T 29-03-2018 IPR004622 DNA polymerase III, delta prime subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS04795 1de7bac7003c941bc228d45edcda8a07 335 SUPERFAMILY SSF52540 1 206 3.92E-45 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS04795 1de7bac7003c941bc228d45edcda8a07 335 Gene3D G3DSA:3.40.50.300 8 165 3.7E-23 T 29-03-2018 AM354_RS16975 c705fc9d042c81aeab3338d69ad29c6a 419 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 6 406 3.3E-127 T 29-03-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 AM354_RS16975 c705fc9d042c81aeab3338d69ad29c6a 419 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 416 44.637 T 29-03-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS16975 c705fc9d042c81aeab3338d69ad29c6a 419 SUPERFAMILY SSF55205 1 418 1.03E-147 T 29-03-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 AM354_RS16975 c705fc9d042c81aeab3338d69ad29c6a 419 Gene3D G3DSA:3.65.10.10 21 219 2.7E-51 T 29-03-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 AM354_RS16975 c705fc9d042c81aeab3338d69ad29c6a 419 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 415 4.1E-186 T 29-03-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS16975 c705fc9d042c81aeab3338d69ad29c6a 419 Gene3D G3DSA:3.65.10.10 220 418 1.2E-48 T 29-03-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 AM354_RS15230 807c75607a6ccee22ddae99a254b8ce1 279 SUPERFAMILY SSF103481 176 277 5.62E-8 T 29-03-2018 AM354_RS15230 807c75607a6ccee22ddae99a254b8ce1 279 Pfam PF00892 EamA-like transporter family 4 129 2.0E-12 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM354_RS15230 807c75607a6ccee22ddae99a254b8ce1 279 Pfam PF00892 EamA-like transporter family 141 271 7.5E-11 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM354_RS15230 807c75607a6ccee22ddae99a254b8ce1 279 SUPERFAMILY SSF103481 33 123 4.45E-7 T 29-03-2018 AM354_RS03590 599cb7bf0523d0cf3c7f4635702321c7 478 Pfam PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF 9 105 1.4E-27 T 29-03-2018 IPR031341 Ribosomal RNA small subunit methyltransferase F, N-terminal KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-6790901|Reactome: R-HSA-8869496 AM354_RS03590 599cb7bf0523d0cf3c7f4635702321c7 478 TIGRFAM TIGR00446 nop2p: NOL1/NOP2/sun family putative RNA methylase 42 310 2.6E-104 T 29-03-2018 IPR011023 Nop2p GO:0003723|GO:0006364|GO:0008757 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-6790901|Reactome: R-HSA-8869496 AM354_RS03590 599cb7bf0523d0cf3c7f4635702321c7 478 Pfam PF01189 16S rRNA methyltransferase RsmB/F 120 309 6.3E-50 T 29-03-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM354_RS03590 599cb7bf0523d0cf3c7f4635702321c7 478 Pfam PF13636 RNA-binding PUA-like domain of methyltransferase RsmF 421 470 6.7E-11 T 29-03-2018 IPR027391 rRNA small subunit methyltransferase F, RNA-binding PUA-like domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM354_RS03590 599cb7bf0523d0cf3c7f4635702321c7 478 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 188 199 - T 29-03-2018 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM354_RS03590 599cb7bf0523d0cf3c7f4635702321c7 478 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 239 255 5.4E-28 T 29-03-2018 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM354_RS03590 599cb7bf0523d0cf3c7f4635702321c7 478 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 189 201 5.4E-28 T 29-03-2018 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM354_RS03590 599cb7bf0523d0cf3c7f4635702321c7 478 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 91 105 5.4E-28 T 29-03-2018 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM354_RS03590 599cb7bf0523d0cf3c7f4635702321c7 478 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 122 132 5.4E-28 T 29-03-2018 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM354_RS03590 599cb7bf0523d0cf3c7f4635702321c7 478 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 293 310 5.4E-28 T 29-03-2018 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM354_RS03590 599cb7bf0523d0cf3c7f4635702321c7 478 Gene3D G3DSA:3.30.70.1170 30 100 8.8E-21 T 29-03-2018 AM354_RS03590 599cb7bf0523d0cf3c7f4635702321c7 478 SUPERFAMILY SSF53335 10 311 8.83E-68 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS03590 599cb7bf0523d0cf3c7f4635702321c7 478 Hamap MF_01579 Ribosomal RNA small subunit methyltransferase F [rsmF]. 7 475 63.046 T 29-03-2018 IPR023545 rRNA small subunit methyltransferase F GO:0008649 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM354_RS03590 599cb7bf0523d0cf3c7f4635702321c7 478 Gene3D G3DSA:3.40.50.150 101 317 4.4E-61 T 29-03-2018 AM354_RS16605 aa3e8ba0f32674d65eabd4f55b29b805 229 Pfam PF04172 LrgB-like family 14 224 5.7E-71 T 29-03-2018 IPR007300 CidB/LrgB family AM354_RS24625 de9ee0f17653c3576ecc2548bc4735a2 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 5.9E-19 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS24625 de9ee0f17653c3576ecc2548bc4735a2 303 Pfam PF03466 LysR substrate binding domain 86 290 1.2E-39 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS24625 de9ee0f17653c3576ecc2548bc4735a2 303 Gene3D G3DSA:3.40.190.10 86 173 3.0E-12 T 29-03-2018 AM354_RS24625 de9ee0f17653c3576ecc2548bc4735a2 303 SUPERFAMILY SSF46785 3 108 9.76E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS24625 de9ee0f17653c3576ecc2548bc4735a2 303 SUPERFAMILY SSF53850 87 293 8.14E-41 T 29-03-2018 AM354_RS24625 de9ee0f17653c3576ecc2548bc4735a2 303 Gene3D G3DSA:3.40.190.10 174 260 5.0E-25 T 29-03-2018 AM354_RS24625 de9ee0f17653c3576ecc2548bc4735a2 303 Gene3D G3DSA:1.10.10.10 3 84 1.2E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS10580 13cc51fe7f5f00b795d2d37b2792b787 360 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 68 80 9.3E-6 T 29-03-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AM354_RS10580 13cc51fe7f5f00b795d2d37b2792b787 360 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 25 358 25.989 T 29-03-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AM354_RS10580 13cc51fe7f5f00b795d2d37b2792b787 360 ProSitePatterns PS01348 MraY family signature 2. 189 200 - T 29-03-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AM354_RS10580 13cc51fe7f5f00b795d2d37b2792b787 360 ProSitePatterns PS01347 MraY family signature 1. 68 80 - T 29-03-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AM354_RS10580 13cc51fe7f5f00b795d2d37b2792b787 360 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 37 360 1.4E-161 T 29-03-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AM354_RS10580 13cc51fe7f5f00b795d2d37b2792b787 360 Pfam PF00953 Glycosyl transferase family 4 99 284 5.6E-37 T 29-03-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193 AM354_RS00205 5942b17ce367d373324f06413766a769 239 Hamap MF_00696 Fatty acid metabolism regulator protein [fadR]. 1 239 162.43 T 29-03-2018 IPR014178 Fatty acid response transcription factor FadR GO:0000062|GO:0003677|GO:0003700|GO:0019217 AM354_RS00205 5942b17ce367d373324f06413766a769 239 SUPERFAMILY SSF48008 79 230 7.46E-64 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM354_RS00205 5942b17ce367d373324f06413766a769 239 Gene3D G3DSA:1.20.120.530 80 239 7.7E-19 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM354_RS00205 5942b17ce367d373324f06413766a769 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 61 2.7E-9 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS00205 5942b17ce367d373324f06413766a769 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 31 45 2.7E-9 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS00205 5942b17ce367d373324f06413766a769 239 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 71 5.3E-20 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS00205 5942b17ce367d373324f06413766a769 239 SMART SM00345 12 71 1.0E-22 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS00205 5942b17ce367d373324f06413766a769 239 Gene3D G3DSA:1.10.10.10 1 79 7.9E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS00205 5942b17ce367d373324f06413766a769 239 Pfam PF07840 FadR C-terminal domain 72 234 3.5E-74 T 29-03-2018 IPR028374 FadR, C-terminal domain GO:0000062|GO:0019217 AM354_RS00205 5942b17ce367d373324f06413766a769 239 TIGRFAM TIGR02812 fadR_gamma: fatty acid metabolism transcriptional regulator FadR 2 236 2.7E-122 T 29-03-2018 IPR014178 Fatty acid response transcription factor FadR GO:0000062|GO:0003677|GO:0003700|GO:0019217 AM354_RS00205 5942b17ce367d373324f06413766a769 239 SUPERFAMILY SSF46785 11 87 2.7E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS03710 b8e7bbba3187c3cc5c48025e46ddec09 176 Pfam PF01817 Chorismate mutase type II 24 92 6.6E-9 T 29-03-2018 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AM354_RS03710 b8e7bbba3187c3cc5c48025e46ddec09 176 PIRSF PIRSF026640 1 173 1.8E-51 T 29-03-2018 IPR008240 Chorismate mutase, periplasmic KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AM354_RS03710 b8e7bbba3187c3cc5c48025e46ddec09 176 TIGRFAM TIGR01806 CM_mono2: putative chorismate mutase 24 129 7.7E-38 T 29-03-2018 IPR008240 Chorismate mutase, periplasmic KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AM354_RS03710 b8e7bbba3187c3cc5c48025e46ddec09 176 Gene3D G3DSA:1.20.59.10 21 100 5.6E-17 T 29-03-2018 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AM354_RS03710 b8e7bbba3187c3cc5c48025e46ddec09 176 SMART SM00830 21 94 3.4E-12 T 29-03-2018 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AM354_RS03710 b8e7bbba3187c3cc5c48025e46ddec09 176 SUPERFAMILY SSF48600 24 170 4.48E-35 T 29-03-2018 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AM354_RS03710 b8e7bbba3187c3cc5c48025e46ddec09 176 Gene3D G3DSA:1.20.59.10 104 168 0.056 T 29-03-2018 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AM354_RS18175 8a55ba6104bd07e00a6701d39da4f430 177 SUPERFAMILY SSF49401 28 177 8.95E-31 T 29-03-2018 IPR008966 Adhesion domain AM354_RS18175 8a55ba6104bd07e00a6701d39da4f430 177 Gene3D G3DSA:2.60.40.1090 26 177 6.4E-25 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS18175 8a55ba6104bd07e00a6701d39da4f430 177 Pfam PF00419 Fimbrial protein 32 176 1.9E-9 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS09680 a7a13e84a79ee393191feae30a4a2147 297 SUPERFAMILY SSF46785 5 89 1.87E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS09680 a7a13e84a79ee393191feae30a4a2147 297 SUPERFAMILY SSF53850 92 294 3.08E-41 T 29-03-2018 AM354_RS09680 a7a13e84a79ee393191feae30a4a2147 297 Gene3D G3DSA:3.40.190.10 179 267 2.3E-25 T 29-03-2018 AM354_RS09680 a7a13e84a79ee393191feae30a4a2147 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 9.4E-22 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS09680 a7a13e84a79ee393191feae30a4a2147 297 Gene3D G3DSA:1.10.10.10 3 86 2.0E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS09680 a7a13e84a79ee393191feae30a4a2147 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 1.4E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS09680 a7a13e84a79ee393191feae30a4a2147 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 1.4E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS09680 a7a13e84a79ee393191feae30a4a2147 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 1.4E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS09680 a7a13e84a79ee393191feae30a4a2147 297 Pfam PF03466 LysR substrate binding domain 90 294 5.9E-38 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS09680 a7a13e84a79ee393191feae30a4a2147 297 Gene3D G3DSA:3.40.190.10 90 178 3.7E-12 T 29-03-2018 AM354_RS14765 ca3d455f26fd4ac935ab7596b5eae68e 85 Pfam PF13710 ACT domain 13 73 4.7E-25 T 29-03-2018 AM354_RS14765 ca3d455f26fd4ac935ab7596b5eae68e 85 SUPERFAMILY SSF55021 3 75 4.51E-11 T 29-03-2018 AM354_RS14765 ca3d455f26fd4ac935ab7596b5eae68e 85 Gene3D G3DSA:3.30.70.260 1 79 2.6E-6 T 29-03-2018 AM354_RS02600 1f4702a4262f2c3051694f42e1cd4fa7 301 Gene3D G3DSA:1.10.10.10 1 87 2.0E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS02600 1f4702a4262f2c3051694f42e1cd4fa7 301 Gene3D G3DSA:3.40.190.10 177 267 9.0E-18 T 29-03-2018 AM354_RS02600 1f4702a4262f2c3051694f42e1cd4fa7 301 SUPERFAMILY SSF53850 91 294 3.53E-35 T 29-03-2018 AM354_RS02600 1f4702a4262f2c3051694f42e1cd4fa7 301 Pfam PF03466 LysR substrate binding domain 90 293 2.5E-35 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS02600 1f4702a4262f2c3051694f42e1cd4fa7 301 Gene3D G3DSA:3.40.190.10 90 176 1.7E-20 T 29-03-2018 AM354_RS02600 1f4702a4262f2c3051694f42e1cd4fa7 301 SUPERFAMILY SSF46785 2 113 2.72E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS02600 1f4702a4262f2c3051694f42e1cd4fa7 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 2.6E-16 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS01955 bb940a56aa26bae143dc01307c925af5 492 SUPERFAMILY SSF56954 4 468 2.09E-89 T 29-03-2018 AM354_RS01955 bb940a56aa26bae143dc01307c925af5 492 Gene3D G3DSA:1.20.1600.10 21 470 9.7E-80 T 29-03-2018 AM354_RS01955 bb940a56aa26bae143dc01307c925af5 492 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 14 465 4.6E-91 T 29-03-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 AM354_RS01955 bb940a56aa26bae143dc01307c925af5 492 Pfam PF02321 Outer membrane efflux protein 65 253 1.5E-17 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 AM354_RS01955 bb940a56aa26bae143dc01307c925af5 492 Pfam PF02321 Outer membrane efflux protein 284 463 8.1E-18 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 AM354_RS10590 97930db2baa63a88ef9ec7e31b65bd88 495 Pfam PF01225 Mur ligase family, catalytic domain 25 102 3.5E-12 T 29-03-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 AM354_RS10590 97930db2baa63a88ef9ec7e31b65bd88 495 SUPERFAMILY SSF63418 5 103 1.26E-23 T 29-03-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 AM354_RS10590 97930db2baa63a88ef9ec7e31b65bd88 495 Gene3D G3DSA:3.90.190.20 343 493 4.4E-48 T 29-03-2018 AM354_RS10590 97930db2baa63a88ef9ec7e31b65bd88 495 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 4 491 34.778 T 29-03-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 AM354_RS10590 97930db2baa63a88ef9ec7e31b65bd88 495 SUPERFAMILY SSF53244 339 491 1.04E-50 T 29-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AM354_RS10590 97930db2baa63a88ef9ec7e31b65bd88 495 SUPERFAMILY SSF53623 105 337 1.22E-78 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 AM354_RS10590 97930db2baa63a88ef9ec7e31b65bd88 495 Gene3D G3DSA:3.40.1390.10 2 104 9.6E-24 T 29-03-2018 AM354_RS10590 97930db2baa63a88ef9ec7e31b65bd88 495 Pfam PF08245 Mur ligase middle domain 114 318 9.4E-52 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 AM354_RS10590 97930db2baa63a88ef9ec7e31b65bd88 495 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 22 491 1.4E-167 T 29-03-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 AM354_RS10590 97930db2baa63a88ef9ec7e31b65bd88 495 Gene3D G3DSA:3.40.1190.10 105 342 1.5E-53 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 AM354_RS10590 97930db2baa63a88ef9ec7e31b65bd88 495 Pfam PF02875 Mur ligase family, glutamate ligase domain 339 425 1.6E-25 T 29-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AM354_RS17375 f68992d0c2c4bfe5d3e95f9917fb7612 505 Pfam PF02321 Outer membrane efflux protein 25 209 4.9E-29 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 AM354_RS17375 f68992d0c2c4bfe5d3e95f9917fb7612 505 Pfam PF02321 Outer membrane efflux protein 232 427 3.4E-34 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 AM354_RS17375 f68992d0c2c4bfe5d3e95f9917fb7612 505 Gene3D G3DSA:1.20.1600.10 13 435 1.5E-74 T 29-03-2018 AM354_RS17375 f68992d0c2c4bfe5d3e95f9917fb7612 505 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 21 439 1.4E-132 T 29-03-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 AM354_RS17375 f68992d0c2c4bfe5d3e95f9917fb7612 505 SUPERFAMILY SSF56954 25 446 2.88E-96 T 29-03-2018 AM354_RS08270 fe78f1e3f949f9ec7d6cabf1b081d877 474 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 4 437 2.8E-152 T 29-03-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 AM354_RS08270 fe78f1e3f949f9ec7d6cabf1b081d877 474 Pfam PF04055 Radical SAM superfamily 151 325 7.6E-26 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AM354_RS08270 fe78f1e3f949f9ec7d6cabf1b081d877 474 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 4 440 1.5E-205 T 29-03-2018 AM354_RS08270 fe78f1e3f949f9ec7d6cabf1b081d877 474 Gene3D G3DSA:3.80.30.20 144 381 2.9E-50 T 29-03-2018 IPR023404 Radical SAM, alpha/beta horseshoe AM354_RS08270 fe78f1e3f949f9ec7d6cabf1b081d877 474 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 151 171 - T 29-03-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 AM354_RS08270 fe78f1e3f949f9ec7d6cabf1b081d877 474 SUPERFAMILY SSF102114 127 372 1.7E-60 T 29-03-2018 AM354_RS08270 fe78f1e3f949f9ec7d6cabf1b081d877 474 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 3 440 73.029 T 29-03-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 AM354_RS08270 fe78f1e3f949f9ec7d6cabf1b081d877 474 Pfam PF00919 Uncharacterized protein family UPF0004 4 104 8.1E-28 T 29-03-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 AM354_RS08270 fe78f1e3f949f9ec7d6cabf1b081d877 474 SMART SM00729 147 367 7.7E-60 T 29-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 AM354_RS08270 fe78f1e3f949f9ec7d6cabf1b081d877 474 Pfam PF01938 TRAM domain 378 440 4.4E-17 T 29-03-2018 IPR002792 TRAM domain AM354_RS15280 5eb06be0a6ca442710c5de66839593be 207 Pfam PF00196 Bacterial regulatory proteins, luxR family 145 198 5.8E-12 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS15280 5eb06be0a6ca442710c5de66839593be 207 Gene3D G3DSA:1.10.10.10 28 207 2.3E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS15280 5eb06be0a6ca442710c5de66839593be 207 ProSitePatterns PS00622 LuxR-type HTH domain signature. 160 187 - T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS15280 5eb06be0a6ca442710c5de66839593be 207 SUPERFAMILY SSF46894 136 202 1.33E-13 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS15280 5eb06be0a6ca442710c5de66839593be 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 176 188 2.5E-6 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS15280 5eb06be0a6ca442710c5de66839593be 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 146 160 2.5E-6 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS15280 5eb06be0a6ca442710c5de66839593be 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 160 176 2.5E-6 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS15280 5eb06be0a6ca442710c5de66839593be 207 SMART SM00421 143 200 3.6E-10 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS14565 3cb6bebcd992b251bed84be1c16900b5 305 Pfam PF01040 UbiA prenyltransferase family 27 274 3.3E-39 T 29-03-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 AM354_RS14565 3cb6bebcd992b251bed84be1c16900b5 305 PIRSF PIRSF005355 1 305 4.3E-91 T 29-03-2018 IPR026046 UbiA prenyltransferase domain containing protein 1 GO:0004659 Reactome: R-HSA-6806664 AM354_RS14565 3cb6bebcd992b251bed84be1c16900b5 305 TIGRFAM TIGR00751 menA: 1,4-dihydroxy-2-naphthoate octaprenyltransferase 18 301 2.1E-133 T 29-03-2018 AM354_RS14565 3cb6bebcd992b251bed84be1c16900b5 305 Hamap MF_01937 1,4-dihydroxy-2-naphthoate octaprenyltransferase [menA]. 9 302 20.895 T 29-03-2018 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase GO:0009234|GO:0016021|GO:0046428 KEGG: 00130+2.5.1.74|MetaCyc: PWY-5839|MetaCyc: PWY-5851|MetaCyc: PWY-5852|MetaCyc: PWY-5853|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 AM354_RS08295 97dfcfd35237313b28318aed3d419913 509 Pfam PF00795 Carbon-nitrogen hydrolase 224 475 7.5E-40 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AM354_RS08295 97dfcfd35237313b28318aed3d419913 509 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 63 456 1.6E-106 T 29-03-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 AM354_RS08295 97dfcfd35237313b28318aed3d419913 509 Gene3D G3DSA:3.60.110.10 219 484 2.7E-42 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AM354_RS08295 97dfcfd35237313b28318aed3d419913 509 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 10 494 24.008 T 29-03-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 AM354_RS08295 97dfcfd35237313b28318aed3d419913 509 SUPERFAMILY SSF56317 216 488 2.35E-41 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AM354_RS02905 3556a0caadedc3bcc75cf5f945d7044e 297 SMART SM00342 23 106 3.7E-28 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS02905 3556a0caadedc3bcc75cf5f945d7044e 297 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 75 90 2.2E-7 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM354_RS02905 3556a0caadedc3bcc75cf5f945d7044e 297 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 90 106 2.2E-7 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM354_RS02905 3556a0caadedc3bcc75cf5f945d7044e 297 Pfam PF12833 Helix-turn-helix domain 30 107 1.8E-20 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS02905 3556a0caadedc3bcc75cf5f945d7044e 297 SUPERFAMILY SSF46689 8 57 1.97E-8 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS02905 3556a0caadedc3bcc75cf5f945d7044e 297 Pfam PF06445 GyrI-like small molecule binding domain 133 278 1.1E-9 T 29-03-2018 IPR029442 GyrI-like small molecule binding domain AM354_RS02905 3556a0caadedc3bcc75cf5f945d7044e 297 SUPERFAMILY SSF46689 61 110 4.35E-12 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS02905 3556a0caadedc3bcc75cf5f945d7044e 297 Gene3D G3DSA:3.20.80.10 131 288 3.2E-11 T 29-03-2018 IPR011256 Regulatory factor, effector binding domain AM354_RS02905 3556a0caadedc3bcc75cf5f945d7044e 297 SUPERFAMILY SSF55136 131 272 1.65E-11 T 29-03-2018 AM354_RS02905 3556a0caadedc3bcc75cf5f945d7044e 297 Gene3D G3DSA:1.10.10.60 2 59 2.6E-10 T 29-03-2018 AM354_RS02905 3556a0caadedc3bcc75cf5f945d7044e 297 Gene3D G3DSA:1.10.10.60 61 114 1.2E-13 T 29-03-2018 AM354_RS05750 7660db39f5641630960e8c4cf812c016 323 Gene3D G3DSA:3.50.50.60 264 321 2.8E-8 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS05750 7660db39f5641630960e8c4cf812c016 323 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 301 2.9E-48 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS05750 7660db39f5641630960e8c4cf812c016 323 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 6.8E-77 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM354_RS05750 7660db39f5641630960e8c4cf812c016 323 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 239 260 6.8E-77 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM354_RS05750 7660db39f5641630960e8c4cf812c016 323 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 62 72 6.8E-77 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM354_RS05750 7660db39f5641630960e8c4cf812c016 323 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 144 168 6.8E-77 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM354_RS05750 7660db39f5641630960e8c4cf812c016 323 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 199 215 6.8E-77 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM354_RS05750 7660db39f5641630960e8c4cf812c016 323 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 129 141 6.8E-77 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM354_RS05750 7660db39f5641630960e8c4cf812c016 323 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 41 56 6.8E-77 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM354_RS05750 7660db39f5641630960e8c4cf812c016 323 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 107 115 6.8E-77 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM354_RS05750 7660db39f5641630960e8c4cf812c016 323 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 277 295 6.8E-77 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM354_RS05750 7660db39f5641630960e8c4cf812c016 323 Gene3D G3DSA:3.40.50.720 136 263 9.0E-22 T 29-03-2018 AM354_RS05750 7660db39f5641630960e8c4cf812c016 323 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 1.4E-40 T 29-03-2018 AM354_RS05750 7660db39f5641630960e8c4cf812c016 323 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 237 253 1.4E-40 T 29-03-2018 AM354_RS05750 7660db39f5641630960e8c4cf812c016 323 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 1.4E-40 T 29-03-2018 AM354_RS05750 7660db39f5641630960e8c4cf812c016 323 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 267 289 1.4E-40 T 29-03-2018 AM354_RS05750 7660db39f5641630960e8c4cf812c016 323 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 106 124 1.4E-40 T 29-03-2018 AM354_RS05750 7660db39f5641630960e8c4cf812c016 323 Gene3D G3DSA:3.50.50.60 2 135 1.0E-21 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS05750 7660db39f5641630960e8c4cf812c016 323 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 8 314 1.5E-123 T 29-03-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 AM354_RS05750 7660db39f5641630960e8c4cf812c016 323 SUPERFAMILY SSF51905 3 315 7.08E-55 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS05750 7660db39f5641630960e8c4cf812c016 323 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 136 156 - T 29-03-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 AM354_RS00340 a30daf3a44082eadbab3698fba00bf29 347 Pfam PF02769 AIR synthase related protein, C-terminal domain 169 334 1.6E-26 T 29-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain AM354_RS00340 a30daf3a44082eadbab3698fba00bf29 347 SUPERFAMILY SSF56042 164 334 3.14E-49 T 29-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain AM354_RS00340 a30daf3a44082eadbab3698fba00bf29 347 PIRSF PIRSF036407 1 346 1.1E-117 T 29-03-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 AM354_RS00340 a30daf3a44082eadbab3698fba00bf29 347 Gene3D G3DSA:3.90.650.10 164 347 3.3E-43 T 29-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain AM354_RS00340 a30daf3a44082eadbab3698fba00bf29 347 TIGRFAM TIGR00476 selD: selenide, water dikinase 7 313 9.1E-136 T 29-03-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 AM354_RS00340 a30daf3a44082eadbab3698fba00bf29 347 SUPERFAMILY SSF55326 7 161 5.76E-42 T 29-03-2018 IPR016188 PurM-like, N-terminal domain AM354_RS00340 a30daf3a44082eadbab3698fba00bf29 347 Hamap MF_00625 Selenide, water dikinase [selD]. 5 347 45.838 T 29-03-2018 IPR023061 Selenophosphate synthetase, class I GO:0004756|GO:0005524|GO:0016260 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 AM354_RS00340 a30daf3a44082eadbab3698fba00bf29 347 Gene3D G3DSA:3.30.1330.10 1 162 1.3E-37 T 29-03-2018 IPR016188 PurM-like, N-terminal domain AM354_RS00340 a30daf3a44082eadbab3698fba00bf29 347 Pfam PF00586 AIR synthase related protein, N-terminal domain 50 157 1.4E-18 T 29-03-2018 IPR016188 PurM-like, N-terminal domain AM354_RS04880 b9ef1ba3fde5b3525af26574a802213d 348 Pfam PF01979 Amidohydrolase family 15 307 2.2E-20 T 29-03-2018 IPR006680 Amidohydrolase-related GO:0016787 AM354_RS04880 b9ef1ba3fde5b3525af26574a802213d 348 Gene3D G3DSA:3.20.20.140 14 348 1.9E-52 T 29-03-2018 AM354_RS04880 b9ef1ba3fde5b3525af26574a802213d 348 ProSitePatterns PS00483 Dihydroorotase signature 2. 249 260 - T 29-03-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM354_RS04880 b9ef1ba3fde5b3525af26574a802213d 348 TIGRFAM TIGR00856 pyrC_dimer: dihydroorotase, homodimeric type 8 347 2.6E-146 T 29-03-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM354_RS04880 b9ef1ba3fde5b3525af26574a802213d 348 PIRSF PIRSF001237 4 348 2.2E-143 T 29-03-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM354_RS04880 b9ef1ba3fde5b3525af26574a802213d 348 SUPERFAMILY SSF51556 8 346 1.36E-147 T 29-03-2018 IPR032466 Metal-dependent hydrolase AM354_RS04880 b9ef1ba3fde5b3525af26574a802213d 348 Hamap MF_00219 Dihydroorotase [pyrC]. 6 347 54.019 T 29-03-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM354_RS18815 f48e314aae241433e6f8caab9993ad84 239 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 24 238 30.768 T 29-03-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 AM354_RS18815 f48e314aae241433e6f8caab9993ad84 239 SUPERFAMILY SSF53335 17 237 4.89E-44 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS18815 f48e314aae241433e6f8caab9993ad84 239 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 49 238 1.0E-69 T 29-03-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 AM354_RS18815 f48e314aae241433e6f8caab9993ad84 239 Pfam PF02390 Putative methyltransferase 64 233 3.8E-60 T 29-03-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 AM354_RS18815 f48e314aae241433e6f8caab9993ad84 239 Gene3D G3DSA:3.40.50.150 30 239 5.0E-33 T 29-03-2018 AM354_RS20090 fe3a10b736490f7d7f250380c4a1223b 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 1.7E-21 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS20090 fe3a10b736490f7d7f250380c4a1223b 305 Gene3D G3DSA:3.40.190.10 92 177 2.5E-17 T 29-03-2018 AM354_RS20090 fe3a10b736490f7d7f250380c4a1223b 305 Gene3D G3DSA:1.10.10.10 4 91 1.6E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS20090 fe3a10b736490f7d7f250380c4a1223b 305 Pfam PF03466 LysR substrate binding domain 91 292 2.9E-40 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS20090 fe3a10b736490f7d7f250380c4a1223b 305 SUPERFAMILY SSF53850 93 296 2.33E-41 T 29-03-2018 AM354_RS20090 fe3a10b736490f7d7f250380c4a1223b 305 SUPERFAMILY SSF46785 3 87 2.2E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS20090 fe3a10b736490f7d7f250380c4a1223b 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 4.6E-10 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS20090 fe3a10b736490f7d7f250380c4a1223b 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 4.6E-10 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS20090 fe3a10b736490f7d7f250380c4a1223b 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 4.6E-10 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS20090 fe3a10b736490f7d7f250380c4a1223b 305 Gene3D G3DSA:3.40.190.10 178 263 4.5E-22 T 29-03-2018 AM354_RS17515 68a0cead4f520eefa136814db95ca856 186 Gene3D G3DSA:3.40.190.10 39 142 1.7E-20 T 29-03-2018 AM354_RS17515 68a0cead4f520eefa136814db95ca856 186 Pfam PF03466 LysR substrate binding domain 7 140 8.8E-16 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS17515 68a0cead4f520eefa136814db95ca856 186 SUPERFAMILY SSF53850 6 140 1.5E-19 T 29-03-2018 AM354_RS20970 c3c33afbc363be436374aaa944853d70 127 PIRSF PIRSF000378 2 127 9.4E-56 T 29-03-2018 IPR011140 Autonomous glycyl radical cofactor GrcA AM354_RS20970 c3c33afbc363be436374aaa944853d70 127 Gene3D G3DSA:3.20.70.20 59 127 4.9E-30 T 29-03-2018 AM354_RS20970 c3c33afbc363be436374aaa944853d70 127 ProSitePatterns PS00850 Glycine radical domain signature. 97 105 - T 29-03-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site AM354_RS20970 c3c33afbc363be436374aaa944853d70 127 Hamap MF_00806 Autonomous glycyl radical cofactor [grcA]. 1 127 43.345 T 29-03-2018 IPR011140 Autonomous glycyl radical cofactor GrcA AM354_RS20970 c3c33afbc363be436374aaa944853d70 127 TIGRFAM TIGR04365 spare_glycyl: autonomous glycyl radical cofactor GrcA 2 127 8.6E-74 T 29-03-2018 IPR011140 Autonomous glycyl radical cofactor GrcA AM354_RS20970 c3c33afbc363be436374aaa944853d70 127 SUPERFAMILY SSF51998 41 125 1.01E-24 T 29-03-2018 AM354_RS20970 c3c33afbc363be436374aaa944853d70 127 Pfam PF01228 Glycine radical 13 108 2.1E-24 T 29-03-2018 IPR001150 Glycine radical domain GO:0003824|GO:0008152 AM354_RS26130 ac368c35efd5102c92fbb0a3fe9f5b1f 137 SUPERFAMILY SSF52980 4 125 5.9E-48 T 29-03-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AM354_RS26130 ac368c35efd5102c92fbb0a3fe9f5b1f 137 PIRSF PIRSF018267 2 137 1.3E-50 T 29-03-2018 IPR004603 DNA mismatch endonuclease vsr GO:0004519|GO:0006298 AM354_RS26130 ac368c35efd5102c92fbb0a3fe9f5b1f 137 Pfam PF03852 DNA mismatch endonuclease Vsr 4 69 2.9E-30 T 29-03-2018 IPR004603 DNA mismatch endonuclease vsr GO:0004519|GO:0006298 AM354_RS26130 ac368c35efd5102c92fbb0a3fe9f5b1f 137 TIGRFAM TIGR00632 vsr: DNA mismatch endonuclease Vsr 3 117 3.4E-42 T 29-03-2018 IPR004603 DNA mismatch endonuclease vsr GO:0004519|GO:0006298 AM354_RS26130 ac368c35efd5102c92fbb0a3fe9f5b1f 137 Gene3D G3DSA:3.40.960.10 19 136 1.3E-29 T 29-03-2018 AM354_RS00345 c58d7d8c3b8eeb898e2f42c39fba179b 369 Gene3D G3DSA:3.40.250.10 10 139 5.7E-15 T 29-03-2018 IPR001763 Rhodanese-like domain AM354_RS00345 c58d7d8c3b8eeb898e2f42c39fba179b 369 SUPERFAMILY SSF52821 16 66 2.33E-19 T 29-03-2018 IPR001763 Rhodanese-like domain AM354_RS00345 c58d7d8c3b8eeb898e2f42c39fba179b 369 SUPERFAMILY SSF52821 94 146 2.33E-19 T 29-03-2018 IPR001763 Rhodanese-like domain AM354_RS00345 c58d7d8c3b8eeb898e2f42c39fba179b 369 Gene3D G3DSA:3.40.50.300 140 366 5.1E-6 T 29-03-2018 AM354_RS00345 c58d7d8c3b8eeb898e2f42c39fba179b 369 Hamap MF_01622 tRNA 2-selenouridine synthase [selU]. 3 363 50.761 T 29-03-2018 IPR017582 tRNA 2-selenouridine synthase GO:0016785|GO:0043828|GO:0070329 AM354_RS00345 c58d7d8c3b8eeb898e2f42c39fba179b 369 TIGRFAM TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase 18 348 2.0E-102 T 29-03-2018 IPR017582 tRNA 2-selenouridine synthase GO:0016785|GO:0043828|GO:0070329 AM354_RS00345 c58d7d8c3b8eeb898e2f42c39fba179b 369 SUPERFAMILY SSF52540 144 280 7.4E-6 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS00345 c58d7d8c3b8eeb898e2f42c39fba179b 369 SMART SM00450 4 134 6.8E-10 T 29-03-2018 IPR001763 Rhodanese-like domain AM354_RS03140 27f212ff4bc17b8f9a8793fb29ca778f 383 Gene3D G3DSA:3.40.50.150 105 372 7.2E-64 T 29-03-2018 AM354_RS03140 27f212ff4bc17b8f9a8793fb29ca778f 383 PIRSF PIRSF003085 6 379 1.3E-124 T 29-03-2018 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 AM354_RS03140 27f212ff4bc17b8f9a8793fb29ca778f 383 SUPERFAMILY SSF53335 117 370 2.09E-77 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS03140 27f212ff4bc17b8f9a8793fb29ca778f 383 Pfam PF02353 Mycolic acid cyclopropane synthetase 108 368 1.5E-101 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS11940 a5a091127320a5f231a32d08db40f90b 79 SUPERFAMILY SSF64307 5 79 1.83E-24 T 29-03-2018 IPR001455 TusA-like domain AM354_RS11940 a5a091127320a5f231a32d08db40f90b 79 Gene3D G3DSA:3.30.110.40 7 79 2.5E-21 T 29-03-2018 IPR001455 TusA-like domain AM354_RS11940 a5a091127320a5f231a32d08db40f90b 79 Pfam PF01206 Sulfurtransferase TusA 11 79 2.7E-20 T 29-03-2018 IPR001455 TusA-like domain AM354_RS11940 a5a091127320a5f231a32d08db40f90b 79 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 12 36 - T 29-03-2018 IPR001455 TusA-like domain AM354_RS08415 cc200e73da327289048ac965d343070f 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 65 6.0E-14 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS08415 cc200e73da327289048ac965d343070f 198 ProSitePatterns PS01081 TetR-type HTH domain signature. 31 62 - T 29-03-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AM354_RS08415 cc200e73da327289048ac965d343070f 198 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 94 195 9.9E-9 T 29-03-2018 AM354_RS08415 cc200e73da327289048ac965d343070f 198 SUPERFAMILY SSF46689 8 80 1.3E-17 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS08415 cc200e73da327289048ac965d343070f 198 Gene3D G3DSA:1.10.357.10 69 197 4.6E-5 T 29-03-2018 AM354_RS08415 cc200e73da327289048ac965d343070f 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 19 32 3.3E-6 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS08415 cc200e73da327289048ac965d343070f 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 63 3.3E-6 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS08415 cc200e73da327289048ac965d343070f 198 Gene3D G3DSA:1.10.10.60 3 40 1.4E-13 T 29-03-2018 AM354_RS08415 cc200e73da327289048ac965d343070f 198 Gene3D G3DSA:1.10.260.40 41 68 1.4E-10 T 29-03-2018 AM354_RS08335 2350419194d40f41d880788ab79b0ba8 860 SUPERFAMILY SSF50677 226 415 1.99E-56 T 29-03-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AM354_RS08335 2350419194d40f41d880788ab79b0ba8 860 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 618 652 1.6E-7 T 29-03-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS08335 2350419194d40f41d880788ab79b0ba8 860 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 16 171 3.3E-26 T 29-03-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS08335 2350419194d40f41d880788ab79b0ba8 860 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 417 571 1.3E-6 T 29-03-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS08335 2350419194d40f41d880788ab79b0ba8 860 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 4 859 23.494 T 29-03-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AM354_RS08335 2350419194d40f41d880788ab79b0ba8 860 Gene3D G3DSA:3.40.50.620 32 194 1.8E-49 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS08335 2350419194d40f41d880788ab79b0ba8 860 Pfam PF08264 Anticodon-binding domain of tRNA 700 822 1.2E-17 T 29-03-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 AM354_RS08335 2350419194d40f41d880788ab79b0ba8 860 Gene3D G3DSA:3.40.50.620 406 563 1.7E-42 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS08335 2350419194d40f41d880788ab79b0ba8 860 Gene3D G3DSA:1.10.730.10 564 859 6.6E-56 T 29-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS08335 2350419194d40f41d880788ab79b0ba8 860 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 53 - T 29-03-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS08335 2350419194d40f41d880788ab79b0ba8 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 215 234 1.8E-52 T 29-03-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AM354_RS08335 2350419194d40f41d880788ab79b0ba8 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 524 546 1.8E-52 T 29-03-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AM354_RS08335 2350419194d40f41d880788ab79b0ba8 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 557 567 1.8E-52 T 29-03-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AM354_RS08335 2350419194d40f41d880788ab79b0ba8 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 485 503 1.8E-52 T 29-03-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AM354_RS08335 2350419194d40f41d880788ab79b0ba8 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 185 198 1.8E-52 T 29-03-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AM354_RS08335 2350419194d40f41d880788ab79b0ba8 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 153 169 1.8E-52 T 29-03-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AM354_RS08335 2350419194d40f41d880788ab79b0ba8 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 127 144 1.8E-52 T 29-03-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AM354_RS08335 2350419194d40f41d880788ab79b0ba8 860 Gene3D G3DSA:3.90.740.10 225 405 2.0E-52 T 29-03-2018 AM354_RS08335 2350419194d40f41d880788ab79b0ba8 860 SUPERFAMILY SSF52374 416 668 1.59E-140 T 29-03-2018 AM354_RS08335 2350419194d40f41d880788ab79b0ba8 860 SUPERFAMILY SSF52374 5 226 1.59E-140 T 29-03-2018 AM354_RS08335 2350419194d40f41d880788ab79b0ba8 860 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 221 403 2.0E-78 T 29-03-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 AM354_RS08335 2350419194d40f41d880788ab79b0ba8 860 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 5 859 0.0 T 29-03-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AM354_RS08335 2350419194d40f41d880788ab79b0ba8 860 SUPERFAMILY SSF47323 662 859 5.98E-39 T 29-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS25015 6f5285bf81e007a3cc1820614954c8f6 884 TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family 14 872 0.0 T 29-03-2018 IPR017729 Type VI secretion system, ATPase ClpV1 AM354_RS25015 6f5285bf81e007a3cc1820614954c8f6 884 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 317 329 - T 29-03-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 AM354_RS25015 6f5285bf81e007a3cc1820614954c8f6 884 SUPERFAMILY SSF52540 565 861 1.82E-65 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS25015 6f5285bf81e007a3cc1820614954c8f6 884 Gene3D G3DSA:3.40.50.300 569 802 2.6E-37 T 29-03-2018 AM354_RS25015 6f5285bf81e007a3cc1820614954c8f6 884 Pfam PF07724 AAA domain (Cdc48 subfamily) 615 780 1.6E-37 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AM354_RS25015 6f5285bf81e007a3cc1820614954c8f6 884 SMART SM01086 788 880 6.1E-13 T 29-03-2018 IPR019489 Clp ATPase, C-terminal AM354_RS25015 6f5285bf81e007a3cc1820614954c8f6 884 SMART SM00382 221 366 6.4E-10 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS25015 6f5285bf81e007a3cc1820614954c8f6 884 SMART SM00382 616 759 3.4E-11 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS25015 6f5285bf81e007a3cc1820614954c8f6 884 SUPERFAMILY SSF52540 183 516 2.66E-72 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS25015 6f5285bf81e007a3cc1820614954c8f6 884 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 788 863 2.8E-14 T 29-03-2018 IPR019489 Clp ATPase, C-terminal AM354_RS25015 6f5285bf81e007a3cc1820614954c8f6 884 Gene3D G3DSA:1.10.8.60 803 884 5.4E-13 T 29-03-2018 AM354_RS25015 6f5285bf81e007a3cc1820614954c8f6 884 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 694 712 2.2E-33 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 AM354_RS25015 6f5285bf81e007a3cc1820614954c8f6 884 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 727 741 2.2E-33 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 AM354_RS25015 6f5285bf81e007a3cc1820614954c8f6 884 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 665 683 2.2E-33 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 AM354_RS25015 6f5285bf81e007a3cc1820614954c8f6 884 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 620 638 2.2E-33 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 AM354_RS25015 6f5285bf81e007a3cc1820614954c8f6 884 Gene3D G3DSA:3.40.50.300 180 365 9.4E-22 T 29-03-2018 AM354_RS25015 6f5285bf81e007a3cc1820614954c8f6 884 SUPERFAMILY SSF81923 17 141 4.12E-17 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 AM354_RS25015 6f5285bf81e007a3cc1820614954c8f6 884 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 226 358 1.6E-9 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AM354_RS25015 6f5285bf81e007a3cc1820614954c8f6 884 Gene3D G3DSA:1.10.1780.10 9 165 2.5E-20 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 AM354_RS25015 6f5285bf81e007a3cc1820614954c8f6 884 Gene3D G3DSA:1.10.8.60 367 566 5.2E-35 T 29-03-2018 AM354_RS12685 958e8a2e088fab8f5f90dae4a91df68d 216 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 22 204 4.0E-55 T 29-03-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AM354_RS12685 958e8a2e088fab8f5f90dae4a91df68d 216 Pfam PF02581 Thiamine monophosphate synthase 22 191 3.0E-56 T 29-03-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AM354_RS12685 958e8a2e088fab8f5f90dae4a91df68d 216 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 5 209 19.988 T 29-03-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AM354_RS12685 958e8a2e088fab8f5f90dae4a91df68d 216 Gene3D G3DSA:3.20.20.70 10 209 1.6E-43 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS12685 958e8a2e088fab8f5f90dae4a91df68d 216 SUPERFAMILY SSF51391 5 209 2.22E-64 T 29-03-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AM354_RS21105 6f3b562f15d5dfbe7f49ac0ed189f2d7 478 SMART SM00387 363 475 8.4E-28 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS21105 6f3b562f15d5dfbe7f49ac0ed189f2d7 478 Gene3D G3DSA:1.10.287.130 242 316 3.8E-14 T 29-03-2018 AM354_RS21105 6f3b562f15d5dfbe7f49ac0ed189f2d7 478 PRINTS PR00344 Bacterial sensor protein C-terminal signature 418 428 3.9E-10 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS21105 6f3b562f15d5dfbe7f49ac0ed189f2d7 478 PRINTS PR00344 Bacterial sensor protein C-terminal signature 435 453 3.9E-10 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS21105 6f3b562f15d5dfbe7f49ac0ed189f2d7 478 PRINTS PR00344 Bacterial sensor protein C-terminal signature 459 472 3.9E-10 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS21105 6f3b562f15d5dfbe7f49ac0ed189f2d7 478 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 414 3.9E-10 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS21105 6f3b562f15d5dfbe7f49ac0ed189f2d7 478 SMART SM00388 252 320 1.1E-16 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS21105 6f3b562f15d5dfbe7f49ac0ed189f2d7 478 Gene3D G3DSA:3.30.565.10 323 478 1.9E-32 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS21105 6f3b562f15d5dfbe7f49ac0ed189f2d7 478 SUPERFAMILY SSF55874 325 473 3.14E-32 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS21105 6f3b562f15d5dfbe7f49ac0ed189f2d7 478 Pfam PF00512 His Kinase A (phospho-acceptor) domain 253 316 4.0E-13 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS21105 6f3b562f15d5dfbe7f49ac0ed189f2d7 478 SUPERFAMILY SSF47384 235 316 3.92E-16 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS21105 6f3b562f15d5dfbe7f49ac0ed189f2d7 478 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 366 474 4.8E-17 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS07530 da05f2be04fc91c1c816d1d3fd99237d 314 SUPERFAMILY SSF53474 37 299 7.69E-30 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS07530 da05f2be04fc91c1c816d1d3fd99237d 314 Gene3D G3DSA:3.40.50.1820 32 304 8.4E-30 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS07530 da05f2be04fc91c1c816d1d3fd99237d 314 Pfam PF12146 Serine aminopeptidase, S33 48 282 3.4E-26 T 29-03-2018 IPR022742 Serine aminopeptidase, S33 AM354_RS22175 017276a5f8d73411d788cce6bca94b3d 313 Pfam PF03466 LysR substrate binding domain 94 288 7.5E-20 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS22175 017276a5f8d73411d788cce6bca94b3d 313 Gene3D G3DSA:3.40.190.10 90 181 6.6E-9 T 29-03-2018 AM354_RS22175 017276a5f8d73411d788cce6bca94b3d 313 SUPERFAMILY SSF46785 5 88 1.41E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS22175 017276a5f8d73411d788cce6bca94b3d 313 Gene3D G3DSA:1.10.10.10 1 86 1.2E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS22175 017276a5f8d73411d788cce6bca94b3d 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 1.5E-13 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS22175 017276a5f8d73411d788cce6bca94b3d 313 SUPERFAMILY SSF53850 94 290 1.99E-22 T 29-03-2018 AM354_RS22175 017276a5f8d73411d788cce6bca94b3d 313 Gene3D G3DSA:3.40.190.10 182 264 2.8E-7 T 29-03-2018 AM354_RS06530 6e8cad3ae4a8d5f980d2fcbcc038d54e 434 ProSitePatterns PS00217 Sugar transport proteins signature 2. 133 158 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM354_RS06530 6e8cad3ae4a8d5f980d2fcbcc038d54e 434 ProSitePatterns PS00216 Sugar transport proteins signature 1. 83 99 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM354_RS06530 6e8cad3ae4a8d5f980d2fcbcc038d54e 434 Pfam PF07690 Major Facilitator Superfamily 29 384 4.5E-26 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS06530 6e8cad3ae4a8d5f980d2fcbcc038d54e 434 Gene3D G3DSA:1.20.1250.20 1 222 5.9E-23 T 29-03-2018 AM354_RS06530 6e8cad3ae4a8d5f980d2fcbcc038d54e 434 Gene3D G3DSA:1.20.1250.20 234 434 2.2E-21 T 29-03-2018 AM354_RS06530 6e8cad3ae4a8d5f980d2fcbcc038d54e 434 SUPERFAMILY SSF103473 21 433 4.84E-61 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS09970 a93cca46538a283ef03faf0acc5f09ac 295 SUPERFAMILY SSF46785 5 88 5.08E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS09970 a93cca46538a283ef03faf0acc5f09ac 295 Gene3D G3DSA:3.40.190.10 93 178 3.4E-16 T 29-03-2018 AM354_RS09970 a93cca46538a283ef03faf0acc5f09ac 295 Gene3D G3DSA:3.40.190.10 179 261 1.1E-20 T 29-03-2018 AM354_RS09970 a93cca46538a283ef03faf0acc5f09ac 295 Gene3D G3DSA:1.10.10.10 2 85 2.2E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS09970 a93cca46538a283ef03faf0acc5f09ac 295 SUPERFAMILY SSF53850 90 294 3.08E-42 T 29-03-2018 AM354_RS09970 a93cca46538a283ef03faf0acc5f09ac 295 Pfam PF03466 LysR substrate binding domain 89 293 2.6E-42 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS09970 a93cca46538a283ef03faf0acc5f09ac 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 1.2E-18 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS12455 d2d029fde6a0aa21a470d83d8f1d2456 539 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 331 486 5.9E-52 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM354_RS12455 d2d029fde6a0aa21a470d83d8f1d2456 539 Gene3D G3DSA:1.10.287.850 241 325 0.013 T 29-03-2018 AM354_RS12455 d2d029fde6a0aa21a470d83d8f1d2456 539 SUPERFAMILY SSF58104 238 519 8.63E-69 T 29-03-2018 AM354_RS12455 d2d029fde6a0aa21a470d83d8f1d2456 539 SMART SM00283 271 518 2.6E-84 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM354_RS12455 d2d029fde6a0aa21a470d83d8f1d2456 539 Gene3D G3DSA:1.20.120.30 23 190 9.2E-16 T 29-03-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain AM354_RS12455 d2d029fde6a0aa21a470d83d8f1d2456 539 Gene3D G3DSA:1.10.287.950 326 522 2.8E-45 T 29-03-2018 AM354_RS12455 d2d029fde6a0aa21a470d83d8f1d2456 539 Pfam PF00672 HAMP domain 218 266 8.6E-10 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM354_RS12455 d2d029fde6a0aa21a470d83d8f1d2456 539 SMART SM00304 218 270 2.5E-11 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM354_RS12455 d2d029fde6a0aa21a470d83d8f1d2456 539 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 369 396 4.8E-63 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM354_RS12455 d2d029fde6a0aa21a470d83d8f1d2456 539 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 398 427 4.8E-63 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM354_RS12455 d2d029fde6a0aa21a470d83d8f1d2456 539 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 446 475 4.8E-63 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM354_RS12455 d2d029fde6a0aa21a470d83d8f1d2456 539 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 4.8E-63 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM354_RS12455 d2d029fde6a0aa21a470d83d8f1d2456 539 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 60 75 4.8E-63 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM354_RS12455 d2d029fde6a0aa21a470d83d8f1d2456 539 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 292 321 4.8E-63 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM354_RS12455 d2d029fde6a0aa21a470d83d8f1d2456 539 Pfam PF02203 Tar ligand binding domain homologue 1 158 1.9E-16 T 29-03-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 AM354_RS12455 d2d029fde6a0aa21a470d83d8f1d2456 539 SUPERFAMILY SSF47170 25 149 2.22E-9 T 29-03-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 AM354_RS00240 668f524ff3d4d7bed5ca8f7b923e5269 186 Pfam PF16473 3' exoribonuclease, RNase T-like 3 172 1.4E-47 T 29-03-2018 IPR033390 3'-5' exoribonuclease Rv2179c-like domain AM354_RS00240 668f524ff3d4d7bed5ca8f7b923e5269 186 Gene3D G3DSA:3.30.420.10 2 180 6.2E-17 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS00240 668f524ff3d4d7bed5ca8f7b923e5269 186 SUPERFAMILY SSF53098 2 171 4.93E-18 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS18960 2bef07fae4d088e858774a20c942b613 475 Gene3D G3DSA:3.40.50.720 170 337 1.1E-28 T 29-03-2018 AM354_RS18960 2bef07fae4d088e858774a20c942b613 475 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 8 459 1.1E-148 T 29-03-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 AM354_RS18960 2bef07fae4d088e858774a20c942b613 475 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 43 53 - T 29-03-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 AM354_RS18960 2bef07fae4d088e858774a20c942b613 475 PIRSF PIRSF000350 1 469 9.6E-86 T 29-03-2018 AM354_RS18960 2bef07fae4d088e858774a20c942b613 475 Gene3D G3DSA:3.50.50.60 2 169 2.2E-26 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS18960 2bef07fae4d088e858774a20c942b613 475 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 9 329 6.3E-63 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS18960 2bef07fae4d088e858774a20c942b613 475 Gene3D G3DSA:3.30.390.30 338 463 1.1E-37 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AM354_RS18960 2bef07fae4d088e858774a20c942b613 475 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 348 456 1.8E-35 T 29-03-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AM354_RS18960 2bef07fae4d088e858774a20c942b613 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 139 157 5.2E-41 T 29-03-2018 AM354_RS18960 2bef07fae4d088e858774a20c942b613 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 178 196 5.2E-41 T 29-03-2018 AM354_RS18960 2bef07fae4d088e858774a20c942b613 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 265 281 5.2E-41 T 29-03-2018 AM354_RS18960 2bef07fae4d088e858774a20c942b613 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 294 316 5.2E-41 T 29-03-2018 AM354_RS18960 2bef07fae4d088e858774a20c942b613 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 5.2E-41 T 29-03-2018 AM354_RS18960 2bef07fae4d088e858774a20c942b613 475 SUPERFAMILY SSF55424 344 467 5.84E-39 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AM354_RS18960 2bef07fae4d088e858774a20c942b613 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 9 31 1.2E-68 T 29-03-2018 AM354_RS18960 2bef07fae4d088e858774a20c942b613 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 266 280 1.2E-68 T 29-03-2018 AM354_RS18960 2bef07fae4d088e858774a20c942b613 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 309 316 1.2E-68 T 29-03-2018 AM354_RS18960 2bef07fae4d088e858774a20c942b613 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 178 203 1.2E-68 T 29-03-2018 AM354_RS18960 2bef07fae4d088e858774a20c942b613 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 142 151 1.2E-68 T 29-03-2018 AM354_RS18960 2bef07fae4d088e858774a20c942b613 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 344 365 1.2E-68 T 29-03-2018 AM354_RS18960 2bef07fae4d088e858774a20c942b613 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 409 424 1.2E-68 T 29-03-2018 AM354_RS18960 2bef07fae4d088e858774a20c942b613 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 42 57 1.2E-68 T 29-03-2018 AM354_RS18960 2bef07fae4d088e858774a20c942b613 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 431 451 1.2E-68 T 29-03-2018 AM354_RS18960 2bef07fae4d088e858774a20c942b613 475 SUPERFAMILY SSF51905 1 338 9.88E-58 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS11770 1595c26392b7c955c316f7cb032f6ea3 554 SMART SM00642 15 414 9.0E-158 T 29-03-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AM354_RS11770 1595c26392b7c955c316f7cb032f6ea3 554 Pfam PF00128 Alpha amylase, catalytic domain 30 371 1.0E-126 T 29-03-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AM354_RS11770 1595c26392b7c955c316f7cb032f6ea3 554 TIGRFAM TIGR02403 trehalose_treC: alpha,alpha-phosphotrehalase 7 550 7.6E-253 T 29-03-2018 IPR012769 Trehalose-6-phosphate hydrolase GO:0005737|GO:0005993|GO:0008788 KEGG: 00500+3.2.1.93 AM354_RS11770 1595c26392b7c955c316f7cb032f6ea3 554 Gene3D G3DSA:2.60.40.1180 476 554 2.3E-20 T 29-03-2018 AM354_RS11770 1595c26392b7c955c316f7cb032f6ea3 554 Pfam PF11941 Domain of unknown function (DUF3459) 459 550 2.9E-12 T 29-03-2018 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) AM354_RS11770 1595c26392b7c955c316f7cb032f6ea3 554 SUPERFAMILY SSF51011 475 552 3.6E-18 T 29-03-2018 AM354_RS11770 1595c26392b7c955c316f7cb032f6ea3 554 Gene3D G3DSA:3.20.20.80 2 121 1.2E-49 T 29-03-2018 AM354_RS11770 1595c26392b7c955c316f7cb032f6ea3 554 Gene3D G3DSA:3.90.400.10 122 170 1.1E-25 T 29-03-2018 AM354_RS11770 1595c26392b7c955c316f7cb032f6ea3 554 Gene3D G3DSA:3.20.20.470 171 337 1.7E-35 T 29-03-2018 AM354_RS11770 1595c26392b7c955c316f7cb032f6ea3 554 SUPERFAMILY SSF51445 5 472 1.43E-153 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily AM354_RS11770 1595c26392b7c955c316f7cb032f6ea3 554 Gene3D G3DSA:3.20.20.80 338 475 2.9E-20 T 29-03-2018 AM354_RS15635 eb040f05bb7ba1fb4301e75f9d575198 159 Gene3D G3DSA:3.40.50.1010 1 139 2.9E-26 T 29-03-2018 IPR029060 PIN domain-like AM354_RS15635 eb040f05bb7ba1fb4301e75f9d575198 159 SUPERFAMILY SSF88723 1 137 1.63E-29 T 29-03-2018 IPR029060 PIN domain-like AM354_RS15635 eb040f05bb7ba1fb4301e75f9d575198 159 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 2 135 11.157 T 29-03-2018 IPR022907 VapC family GO:0004540 AM354_RS15635 eb040f05bb7ba1fb4301e75f9d575198 159 Pfam PF01850 PIN domain 2 124 1.9E-18 T 29-03-2018 IPR002716 PIN domain AM354_RS08945 c1789507c8b9761042b215133a5ccb8a 156 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 26 8.0E-5 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site AM354_RS08945 c1789507c8b9761042b215133a5ccb8a 156 SUPERFAMILY SSF54523 7 93 1.33E-6 T 29-03-2018 AM354_RS08945 c1789507c8b9761042b215133a5ccb8a 156 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 26 2.3E-5 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site AM354_RS08945 c1789507c8b9761042b215133a5ccb8a 156 PRINTS PR00885 Bacterial general secretion pathway protein H signature 17 31 5.0E-10 T 29-03-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 AM354_RS08945 c1789507c8b9761042b215133a5ccb8a 156 PRINTS PR00885 Bacterial general secretion pathway protein H signature 2 16 5.0E-10 T 29-03-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 AM354_RS08945 c1789507c8b9761042b215133a5ccb8a 156 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site AM354_RS08945 c1789507c8b9761042b215133a5ccb8a 156 Gene3D G3DSA:3.55.40.10 32 156 1.4E-13 T 29-03-2018 AM354_RS11515 98f7656bda5c27814a16284b8551ca11 259 SUPERFAMILY SSF52540 8 228 6.57E-61 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS11515 98f7656bda5c27814a16284b8551ca11 259 Gene3D G3DSA:3.40.50.300 5 255 4.9E-56 T 29-03-2018 AM354_RS11515 98f7656bda5c27814a16284b8551ca11 259 Pfam PF00005 ABC transporter 29 168 4.8E-27 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS11515 98f7656bda5c27814a16284b8551ca11 259 SMART SM00382 38 221 2.4E-14 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS11515 98f7656bda5c27814a16284b8551ca11 259 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS05390 f715a3c35686eff79d97ce8f74ce722d 92 ProSitePatterns PS00150 Acylphosphatase signature 1. 10 20 - T 29-03-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AM354_RS05390 f715a3c35686eff79d97ce8f74ce722d 92 Gene3D G3DSA:3.30.70.100 1 92 2.4E-29 T 29-03-2018 AM354_RS05390 f715a3c35686eff79d97ce8f74ce722d 92 Hamap MF_01450 Acylphosphatase [yccX]. 2 91 28.637 T 29-03-2018 IPR028627 Acylphosphatase, bacteria GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AM354_RS05390 f715a3c35686eff79d97ce8f74ce722d 92 ProSitePatterns PS00151 Acylphosphatase signature 2. 34 50 - T 29-03-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AM354_RS05390 f715a3c35686eff79d97ce8f74ce722d 92 Pfam PF00708 Acylphosphatase 8 89 5.2E-25 T 29-03-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AM354_RS05390 f715a3c35686eff79d97ce8f74ce722d 92 PRINTS PR00112 Acylphosphatase signature 61 81 2.2E-6 T 29-03-2018 IPR020456 Acylphosphatase GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AM354_RS05390 f715a3c35686eff79d97ce8f74ce722d 92 PRINTS PR00112 Acylphosphatase signature 26 51 2.2E-6 T 29-03-2018 IPR020456 Acylphosphatase GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AM354_RS05390 f715a3c35686eff79d97ce8f74ce722d 92 PRINTS PR00112 Acylphosphatase signature 5 20 2.2E-6 T 29-03-2018 IPR020456 Acylphosphatase GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AM354_RS05390 f715a3c35686eff79d97ce8f74ce722d 92 SUPERFAMILY SSF54975 2 92 1.0E-29 T 29-03-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AM354_RS05955 0c16da42d60a16a4aa9cc5d0d952e683 129 ProDom PD079046 MEMBRANE INNER YBJM TRANSMEMBRANE 31 108 9.0E-14 T 29-03-2018 IPR020368 Uncharacterised protein family YbjM GO:0016021 AM354_RS05955 0c16da42d60a16a4aa9cc5d0d952e683 129 Pfam PF11045 Putative inner membrane protein of Enterobacteriaceae 4 117 4.1E-46 T 29-03-2018 IPR020368 Uncharacterised protein family YbjM GO:0016021 AM354_RS15955 d0a383fd67d3a2941485f5ecbf2bf59b 129 Pfam PF02635 DsrE/DsrF-like family 4 129 1.3E-28 T 29-03-2018 IPR003787 Sulphur relay, DsrE/F-like protein AM354_RS15955 d0a383fd67d3a2941485f5ecbf2bf59b 129 SUPERFAMILY SSF75169 1 129 2.16E-37 T 29-03-2018 IPR027396 DsrEFH-like AM354_RS15955 d0a383fd67d3a2941485f5ecbf2bf59b 129 Hamap MF_00390 Sulfurtransferase TusD [tusD]. 2 129 40.452 T 29-03-2018 IPR017463 Sulphur relay, TusD/DsrE GO:0005737|GO:0008033|GO:0016783 AM354_RS15955 d0a383fd67d3a2941485f5ecbf2bf59b 129 TIGRFAM TIGR03012 sulf_tusD_dsrE: sulfur relay protein TusD/DsrE 4 129 3.1E-55 T 29-03-2018 IPR017463 Sulphur relay, TusD/DsrE GO:0005737|GO:0008033|GO:0016783 AM354_RS15955 d0a383fd67d3a2941485f5ecbf2bf59b 129 Gene3D G3DSA:3.40.1260.10 2 129 1.6E-30 T 29-03-2018 AM354_RS10350 25257e4b8c99b372ce477a67b1ed4a04 223 Pfam PF13394 4Fe-4S single cluster domain 24 128 2.7E-12 T 29-03-2018 AM354_RS10350 25257e4b8c99b372ce477a67b1ed4a04 223 Gene3D G3DSA:3.20.20.70 24 220 3.6E-13 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS10350 25257e4b8c99b372ce477a67b1ed4a04 223 SUPERFAMILY SSF102114 24 121 1.31E-7 T 29-03-2018 AM354_RS10350 25257e4b8c99b372ce477a67b1ed4a04 223 PIRSF PIRSF000370 1 223 1.7E-71 T 29-03-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 AM354_RS10350 25257e4b8c99b372ce477a67b1ed4a04 223 Pfam PF04055 Radical SAM superfamily 27 124 1.2E-8 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AM354_RS10350 25257e4b8c99b372ce477a67b1ed4a04 223 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 3 223 38.419 T 29-03-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 AM354_RS10350 25257e4b8c99b372ce477a67b1ed4a04 223 TIGRFAM TIGR04322 rSAM_QueE_Ecoli: putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 9 223 5.4E-115 T 29-03-2018 IPR027609 Putative 7-carboxy-7-deazaguanine synthase QueE, Proteobacteria KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 AM354_RS13245 48afccb806e9d79427c5d5e21e6d25e4 274 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 1 273 1.6E-101 T 29-03-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AM354_RS13245 48afccb806e9d79427c5d5e21e6d25e4 274 SUPERFAMILY SSF54506 2 273 4.03E-54 T 29-03-2018 AM354_RS13245 48afccb806e9d79427c5d5e21e6d25e4 274 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 64 78 - T 29-03-2018 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AM354_RS13245 48afccb806e9d79427c5d5e21e6d25e4 274 Gene3D G3DSA:3.10.310.10 125 261 1.4E-48 T 29-03-2018 AM354_RS13245 48afccb806e9d79427c5d5e21e6d25e4 274 Gene3D G3DSA:3.10.310.10 1 124 2.8E-47 T 29-03-2018 AM354_RS13245 48afccb806e9d79427c5d5e21e6d25e4 274 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 1 274 39.019 T 29-03-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AM354_RS13245 48afccb806e9d79427c5d5e21e6d25e4 274 Pfam PF01678 Diaminopimelate epimerase 152 267 3.5E-31 T 29-03-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AM354_RS13245 48afccb806e9d79427c5d5e21e6d25e4 274 Pfam PF01678 Diaminopimelate epimerase 3 123 5.0E-34 T 29-03-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AM354_RS05430 4331b6548e38109546f24f9426ae7519 711 Pfam PF12805 FUSC-like inner membrane protein yccS 68 347 7.3E-111 T 29-03-2018 IPR032692 Integral membrane protein YccS, N-terminal AM354_RS05430 4331b6548e38109546f24f9426ae7519 711 Pfam PF13515 Fusaric acid resistance protein-like 407 526 6.4E-23 T 29-03-2018 AM354_RS05430 4331b6548e38109546f24f9426ae7519 711 TIGRFAM TIGR01666 YCCS: TIGR01666 family membrane protein 10 706 0.0 T 29-03-2018 IPR010019 Integral membrane protein, YccS AM354_RS05430 4331b6548e38109546f24f9426ae7519 711 TIGRFAM TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family 10 706 2.3E-289 T 29-03-2018 IPR010020 Integral membrane protein, YccS/YhfK AM354_RS20470 268e08f95af409db89a71ed07e31ab55 228 SUPERFAMILY SSF52172 6 136 2.85E-30 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS20470 268e08f95af409db89a71ed07e31ab55 228 SMART SM00448 6 119 5.9E-20 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS20470 268e08f95af409db89a71ed07e31ab55 228 Gene3D G3DSA:1.10.10.10 160 226 9.2E-5 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS20470 268e08f95af409db89a71ed07e31ab55 228 Gene3D G3DSA:3.40.50.2300 5 149 3.0E-26 T 29-03-2018 AM354_RS20470 268e08f95af409db89a71ed07e31ab55 228 Pfam PF00072 Response regulator receiver domain 8 119 5.6E-21 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS20470 268e08f95af409db89a71ed07e31ab55 228 PIRSF PIRSF006171 4 228 2.5E-64 T 29-03-2018 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0001071|GO:0003677|GO:0005737|GO:0009605 AM354_RS20470 268e08f95af409db89a71ed07e31ab55 228 Pfam PF12431 Transcriptional regulator 135 161 6.2E-5 T 29-03-2018 IPR028141 Transcriptional regulator AM354_RS22800 86b1c235a03dc5124d72e051c246331f 275 SUPERFAMILY SSF55166 21 271 7.38E-99 T 29-03-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AM354_RS22800 86b1c235a03dc5124d72e051c246331f 275 PIRSF PIRSF018455 2 275 4.9E-118 T 29-03-2018 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 AM354_RS22800 86b1c235a03dc5124d72e051c246331f 275 Gene3D G3DSA:3.30.1380.10 20 273 1.4E-95 T 29-03-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AM354_RS22800 86b1c235a03dc5124d72e051c246331f 275 Pfam PF03411 Penicillin-insensitive murein endopeptidase 36 269 2.1E-96 T 29-03-2018 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 AM354_RS16775 799ec94681b0ea32ca884c96bd73a57c 655 Hamap MF_01545 p-hydroxybenzoic acid efflux pump subunit AaeB [aaeB]. 1 654 53.992 T 29-03-2018 IPR023706 Para-hydroxybenzoic acid efflux pump, subunit AaeB GO:0005886|GO:0006810 AM354_RS16775 799ec94681b0ea32ca884c96bd73a57c 655 Pfam PF04632 Fusaric acid resistance protein family 8 653 1.1E-162 T 29-03-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0006810 AM354_RS25385 6334c96614aafba1ba56a2ed6435c006 260 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 14 254 8.6E-74 T 29-03-2018 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 AM354_RS25385 6334c96614aafba1ba56a2ed6435c006 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 80 99 3.8E-31 T 29-03-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 AM354_RS25385 6334c96614aafba1ba56a2ed6435c006 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 180 202 3.8E-31 T 29-03-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 AM354_RS25385 6334c96614aafba1ba56a2ed6435c006 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 22 43 3.8E-31 T 29-03-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 AM354_RS25385 6334c96614aafba1ba56a2ed6435c006 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 202 221 3.8E-31 T 29-03-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 AM354_RS25385 6334c96614aafba1ba56a2ed6435c006 260 Pfam PF01311 Bacterial export proteins, family 1 15 246 2.0E-67 T 29-03-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 AM354_RS17750 961e5fd6fc94418a89fe0495668b1ab8 120 Pfam PF06953 Arsenical resistance operon trans-acting repressor ArsD 1 115 3.8E-29 T 29-03-2018 IPR010712 Arsenical-resistance operon trans-acting repressor ArsD GO:0003677|GO:0045892|GO:0046685 AM354_RS11735 0670cd55aad78ff5c63adf4d16cad244 154 Gene3D G3DSA:3.30.70.140 5 97 1.6E-33 T 29-03-2018 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal AM354_RS11735 0670cd55aad78ff5c63adf4d16cad244 154 Pfam PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain 103 149 2.4E-18 T 29-03-2018 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal AM354_RS11735 0670cd55aad78ff5c63adf4d16cad244 154 ProDom PD006194 REGULATORY ASPARTATE CARBAMOYLTRANSFERASE CHAIN METAL-BINDING ZINC PYRIMIDINE BIOSYNTHESIS SUBUNIT TRANSFERASE 9 99 9.0E-40 T 29-03-2018 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal AM354_RS11735 0670cd55aad78ff5c63adf4d16cad244 154 Gene3D G3DSA:2.30.30.20 100 147 1.3E-17 T 29-03-2018 AM354_RS11735 0670cd55aad78ff5c63adf4d16cad244 154 SUPERFAMILY SSF57825 101 151 3.92E-15 T 29-03-2018 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal AM354_RS11735 0670cd55aad78ff5c63adf4d16cad244 154 Pfam PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain 7 97 1.7E-29 T 29-03-2018 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal AM354_RS11735 0670cd55aad78ff5c63adf4d16cad244 154 Hamap MF_00002 Aspartate carbamoyltransferase regulatory chain [pyrI]. 4 152 32.569 T 29-03-2018 IPR002801 Aspartate transcarbamylase regulatory subunit GO:0006207|GO:0009347 AM354_RS11735 0670cd55aad78ff5c63adf4d16cad244 154 TIGRFAM TIGR00240 ATCase_reg: aspartate carbamoyltransferase, regulatory subunit 5 151 3.5E-64 T 29-03-2018 IPR002801 Aspartate transcarbamylase regulatory subunit GO:0006207|GO:0009347 AM354_RS11735 0670cd55aad78ff5c63adf4d16cad244 154 SUPERFAMILY SSF54893 2 100 5.23E-35 T 29-03-2018 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal AM354_RS23020 61f69ee64415154bb9e4c211cc550781 123 SUPERFAMILY SSF55620 9 121 2.06E-28 T 29-03-2018 AM354_RS23020 61f69ee64415154bb9e4c211cc550781 123 TIGRFAM TIGR00526 folB_dom: FolB domain 9 122 5.5E-36 T 29-03-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AM354_RS23020 61f69ee64415154bb9e4c211cc550781 123 SMART SM00905 10 120 7.9E-32 T 29-03-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AM354_RS23020 61f69ee64415154bb9e4c211cc550781 123 Gene3D G3DSA:3.30.1130.10 3 122 4.8E-29 T 29-03-2018 AM354_RS23020 61f69ee64415154bb9e4c211cc550781 123 Pfam PF02152 Dihydroneopterin aldolase 10 118 7.7E-24 T 29-03-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AM354_RS18015 9dc7473fc1ccde3bbd19d7507fa67be5 220 Pfam PF09335 SNARE associated Golgi protein 48 173 2.4E-19 T 29-03-2018 IPR032816 SNARE associated Golgi protein AM354_RS01825 4f8bb13cfd6e2d41e82959868e12bb26 244 SUPERFAMILY SSF53697 93 230 1.02E-29 T 29-03-2018 AM354_RS01825 4f8bb13cfd6e2d41e82959868e12bb26 244 Pfam PF01418 Helix-turn-helix domain, rpiR family 9 72 3.9E-16 T 29-03-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 AM354_RS01825 4f8bb13cfd6e2d41e82959868e12bb26 244 Gene3D G3DSA:1.10.10.10 3 99 2.1E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS01825 4f8bb13cfd6e2d41e82959868e12bb26 244 Gene3D G3DSA:3.40.50.10490 100 234 4.4E-23 T 29-03-2018 AM354_RS01825 4f8bb13cfd6e2d41e82959868e12bb26 244 SUPERFAMILY SSF46689 6 72 2.51E-20 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS01825 4f8bb13cfd6e2d41e82959868e12bb26 244 Pfam PF01380 SIS domain 108 222 6.8E-16 T 29-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AM354_RS09215 be5d6b30fdf39fdd2e653faec168d6b8 149 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 147 8.0E-76 T 29-03-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 AM354_RS09215 be5d6b30fdf39fdd2e653faec168d6b8 149 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 149 88.297 T 29-03-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 AM354_RS09215 be5d6b30fdf39fdd2e653faec168d6b8 149 Pfam PF03477 ATP cone domain 50 136 8.4E-16 T 29-03-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 AM354_RS12870 d540388dcc11bf8b80973008725ce410 387 Gene3D G3DSA:3.40.47.10 257 384 1.4E-33 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS12870 d540388dcc11bf8b80973008725ce410 387 Pfam PF02803 Thiolase, C-terminal domain 262 386 2.6E-50 T 29-03-2018 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 AM354_RS12870 d540388dcc11bf8b80973008725ce410 387 Gene3D G3DSA:3.40.47.10 1 256 2.9E-54 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS12870 d540388dcc11bf8b80973008725ce410 387 TIGRFAM TIGR02445 fadA: acetyl-CoA C-acyltransferase FadA 3 387 5.1E-233 T 29-03-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 AM354_RS12870 d540388dcc11bf8b80973008725ce410 387 SUPERFAMILY SSF53901 1 258 1.44E-80 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS12870 d540388dcc11bf8b80973008725ce410 387 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 385 2.5E-145 T 29-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 AM354_RS12870 d540388dcc11bf8b80973008725ce410 387 Pfam PF00108 Thiolase, N-terminal domain 4 254 1.9E-86 T 29-03-2018 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 AM354_RS12870 d540388dcc11bf8b80973008725ce410 387 SUPERFAMILY SSF53901 263 386 1.23E-43 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS12870 d540388dcc11bf8b80973008725ce410 387 Hamap MF_01620 3-ketoacyl-CoA thiolase [fadA]. 1 387 61.367 T 29-03-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 AM354_RS12870 d540388dcc11bf8b80973008725ce410 387 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 87 105 - T 29-03-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 AM354_RS12870 d540388dcc11bf8b80973008725ce410 387 ProSitePatterns PS00737 Thiolases signature 2. 333 349 - T 29-03-2018 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 AM354_RS12870 d540388dcc11bf8b80973008725ce410 387 PIRSF PIRSF000429 1 387 1.5E-133 T 29-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 AM354_RS12870 d540388dcc11bf8b80973008725ce410 387 ProSitePatterns PS00099 Thiolases active site. 368 381 - T 29-03-2018 IPR020610 Thiolase, active site GO:0008152|GO:0016747 AM354_RS12900 04f15d303f75dae6a7ac55c9c087ec4a 260 Pfam PF01026 TatD related DNase 2 257 6.7E-68 T 29-03-2018 IPR001130 TatD family GO:0016788 AM354_RS12900 04f15d303f75dae6a7ac55c9c087ec4a 260 Gene3D G3DSA:3.20.20.140 1 260 3.5E-83 T 29-03-2018 AM354_RS12900 04f15d303f75dae6a7ac55c9c087ec4a 260 SUPERFAMILY SSF51556 1 259 2.48E-82 T 29-03-2018 IPR032466 Metal-dependent hydrolase AM354_RS12900 04f15d303f75dae6a7ac55c9c087ec4a 260 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 190 206 - T 29-03-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 AM354_RS12900 04f15d303f75dae6a7ac55c9c087ec4a 260 PIRSF PIRSF005902 1 260 7.6E-75 T 29-03-2018 IPR001130 TatD family GO:0016788 AM354_RS12900 04f15d303f75dae6a7ac55c9c087ec4a 260 Hamap MF_00901 3'-5' ssDNA/RNA exonuclease TatD [tatD]. 1 260 64.268 T 29-03-2018 IPR024918 3'-5' ssDNA/RNA exonuclease TatD GO:0008408 AM354_RS18365 8cdfadc2d68b126cc45956d8284b0412 118 Pfam PF11990 Protein of unknown function (DUF3487) 2 114 1.9E-43 T 29-03-2018 IPR021877 Protein of unknown function DUF3487 AM354_RS18365 8cdfadc2d68b126cc45956d8284b0412 118 TIGRFAM TIGR03750 conj_TIGR03750: conjugative transfer region protein, TIGR03750 family 4 113 6.1E-42 T 29-03-2018 IPR021877 Protein of unknown function DUF3487 AM354_RS22000 e836514b71dd9b38ea9a6e39c82605d1 117 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 4 117 1.7E-49 T 29-03-2018 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 AM354_RS22000 e836514b71dd9b38ea9a6e39c82605d1 117 Gene3D G3DSA:3.40.30.10 1 117 5.9E-41 T 29-03-2018 AM354_RS22000 e836514b71dd9b38ea9a6e39c82605d1 117 Pfam PF03960 ArsC family 7 116 2.8E-22 T 29-03-2018 IPR006660 Arsenate reductase-like AM354_RS22000 e836514b71dd9b38ea9a6e39c82605d1 117 SUPERFAMILY SSF52833 3 117 1.03E-37 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS16335 92c9c71312473ab48f9c3a55cee5dc5c 261 Gene3D G3DSA:1.10.3720.10 9 259 8.6E-40 T 29-03-2018 AM354_RS16335 92c9c71312473ab48f9c3a55cee5dc5c 261 SUPERFAMILY SSF161098 6 258 1.13E-43 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS16335 92c9c71312473ab48f9c3a55cee5dc5c 261 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 258 6.9E-14 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS20945 482d9f3288dd4aa8cf5bcca6d32a697d 112 Gene3D G3DSA:3.30.1450.10 35 109 3.7E-10 T 29-03-2018 AM354_RS20945 482d9f3288dd4aa8cf5bcca6d32a697d 112 Hamap MF_00925 Outer membrane protein assembly factor BamE [bamE]. 4 112 32.992 T 29-03-2018 IPR026592 Outer membrane protein assembly factor BamE AM354_RS20945 482d9f3288dd4aa8cf5bcca6d32a697d 112 Pfam PF04355 SmpA / OmlA family 35 104 1.7E-27 T 29-03-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 AM354_RS24035 10e7f1236535c53bcff0219cbb87a91e 536 Gene3D G3DSA:1.20.1250.20 219 510 2.9E-20 T 29-03-2018 AM354_RS24035 10e7f1236535c53bcff0219cbb87a91e 536 SUPERFAMILY SSF103473 21 409 1.31E-50 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS24035 10e7f1236535c53bcff0219cbb87a91e 536 Pfam PF05977 Transmembrane secretion effector 12 527 1.2E-208 T 29-03-2018 IPR010290 Transmembrane secretion effector AM354_RS24035 10e7f1236535c53bcff0219cbb87a91e 536 Gene3D G3DSA:1.20.1250.20 14 213 2.1E-21 T 29-03-2018 AM354_RS19890 1d3e6debb579e88aafbeddbf619f856c 575 Pfam PF06472 ABC transporter transmembrane region 2 9 295 1.5E-65 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM354_RS19890 1d3e6debb579e88aafbeddbf619f856c 575 Gene3D G3DSA:1.20.1560.10 8 347 1.4E-41 T 29-03-2018 AM354_RS19890 1d3e6debb579e88aafbeddbf619f856c 575 Gene3D G3DSA:3.40.50.300 348 561 5.1E-39 T 29-03-2018 AM354_RS19890 1d3e6debb579e88aafbeddbf619f856c 575 SMART SM00382 390 568 4.9E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS19890 1d3e6debb579e88aafbeddbf619f856c 575 ProSitePatterns PS00211 ABC transporters family signature. 488 502 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS19890 1d3e6debb579e88aafbeddbf619f856c 575 SUPERFAMILY SSF52540 363 554 3.2E-37 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS19890 1d3e6debb579e88aafbeddbf619f856c 575 SUPERFAMILY SSF90123 24 340 2.35E-26 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM354_RS19890 1d3e6debb579e88aafbeddbf619f856c 575 Pfam PF00005 ABC transporter 383 516 1.5E-20 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS23645 55e10e59a3fa4724b26ac1767b02e219 313 Gene3D G3DSA:3.40.1190.20 47 312 5.3E-51 T 29-03-2018 IPR029056 Ribokinase-like AM354_RS23645 55e10e59a3fa4724b26ac1767b02e219 313 SUPERFAMILY SSF53613 7 290 2.34E-67 T 29-03-2018 IPR029056 Ribokinase-like AM354_RS23645 55e10e59a3fa4724b26ac1767b02e219 313 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 249 262 - T 29-03-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AM354_RS23645 55e10e59a3fa4724b26ac1767b02e219 313 Gene3D G3DSA:2.20.150.10 12 46 3.2E-12 T 29-03-2018 IPR023314 Tagatose-6-phosphate kinase/1-phosphofructokinase N-terminal domain AM354_RS23645 55e10e59a3fa4724b26ac1767b02e219 313 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 39 63 - T 29-03-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AM354_RS23645 55e10e59a3fa4724b26ac1767b02e219 313 TIGRFAM TIGR03828 pfkB: 1-phosphofructokinase 5 308 9.4E-101 T 29-03-2018 IPR022463 Fructose 1-phosphate kinase GO:0008662 KEGG: 00051+2.7.1.56 AM354_RS23645 55e10e59a3fa4724b26ac1767b02e219 313 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 5 308 4.1E-99 T 29-03-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 AM354_RS23645 55e10e59a3fa4724b26ac1767b02e219 313 Pfam PF00294 pfkB family carbohydrate kinase 14 292 2.0E-64 T 29-03-2018 IPR011611 Carbohydrate kinase PfkB AM354_RS23645 55e10e59a3fa4724b26ac1767b02e219 313 PIRSF PIRSF000535 2 311 5.9E-117 T 29-03-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 AM354_RS00085 3a8a18e751204b19da9491249f92fe5f 440 Gene3D G3DSA:2.70.70.10 167 410 2.7E-45 T 29-03-2018 AM354_RS00085 3a8a18e751204b19da9491249f92fe5f 440 SMART SM00257 98 143 9.5E-5 T 29-03-2018 IPR018392 LysM domain AM354_RS00085 3a8a18e751204b19da9491249f92fe5f 440 Pfam PF08525 Opacity-associated protein A N-terminal motif 12 39 2.4E-8 T 29-03-2018 IPR013731 Opacity-associated protein A, N-terminal AM354_RS00085 3a8a18e751204b19da9491249f92fe5f 440 SUPERFAMILY SSF51261 166 408 1.36E-70 T 29-03-2018 IPR011055 Duplicated hybrid motif AM354_RS00085 3a8a18e751204b19da9491249f92fe5f 440 Pfam PF01476 LysM domain 99 142 1.8E-5 T 29-03-2018 IPR018392 LysM domain AM354_RS00085 3a8a18e751204b19da9491249f92fe5f 440 Gene3D G3DSA:3.10.350.10 85 166 1.0E-6 T 29-03-2018 AM354_RS00085 3a8a18e751204b19da9491249f92fe5f 440 Pfam PF01551 Peptidase family M23 313 407 3.2E-34 T 29-03-2018 IPR016047 Peptidase M23 AM354_RS14265 48bd751accee1eb5a1a0b7634684a6ae 207 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 4 184 4.3E-76 T 29-03-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 AM354_RS14265 48bd751accee1eb5a1a0b7634684a6ae 207 Hamap MF_00328 Guanylate kinase [gmk]. 2 187 38.17 T 29-03-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 AM354_RS14265 48bd751accee1eb5a1a0b7634684a6ae 207 SUPERFAMILY SSF52540 3 189 4.7E-71 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS14265 48bd751accee1eb5a1a0b7634684a6ae 207 Pfam PF00625 Guanylate kinase 5 186 3.4E-69 T 29-03-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit AM354_RS14265 48bd751accee1eb5a1a0b7634684a6ae 207 Gene3D G3DSA:3.30.63.10 48 83 4.7E-27 T 29-03-2018 AM354_RS14265 48bd751accee1eb5a1a0b7634684a6ae 207 ProSitePatterns PS00856 Guanylate kinase-like signature. 40 57 - T 29-03-2018 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 AM354_RS14265 48bd751accee1eb5a1a0b7634684a6ae 207 Gene3D G3DSA:3.40.50.300 3 47 8.1E-4 T 29-03-2018 AM354_RS14265 48bd751accee1eb5a1a0b7634684a6ae 207 Gene3D G3DSA:3.40.50.300 84 187 6.2E-35 T 29-03-2018 AM354_RS14265 48bd751accee1eb5a1a0b7634684a6ae 207 SMART SM00072 3 187 1.3E-83 T 29-03-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit AM354_RS14970 1692b4601798a4103ffe7c73e592db52 500 Pfam PF01384 Phosphate transporter family 30 489 1.3E-88 T 29-03-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 AM354_RS14045 09dac49c167c064e3cc954c6855884fb 153 SMART SM00344 7 114 2.4E-44 T 29-03-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AM354_RS14045 09dac49c167c064e3cc954c6855884fb 153 Pfam PF01037 Lrp/AsnC ligand binding domain 77 144 4.3E-17 T 29-03-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AM354_RS14045 09dac49c167c064e3cc954c6855884fb 153 ProSitePatterns PS00519 AsnC-type HTH domain signature. 25 51 - T 29-03-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site AM354_RS14045 09dac49c167c064e3cc954c6855884fb 153 Pfam PF13412 Winged helix-turn-helix DNA-binding 8 54 2.0E-13 T 29-03-2018 AM354_RS14045 09dac49c167c064e3cc954c6855884fb 153 SUPERFAMILY SSF54909 68 153 2.28E-19 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel AM354_RS14045 09dac49c167c064e3cc954c6855884fb 153 SUPERFAMILY SSF46785 5 67 1.14E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS14045 09dac49c167c064e3cc954c6855884fb 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 7 23 1.6E-11 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 AM354_RS14045 09dac49c167c064e3cc954c6855884fb 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 34 53 1.6E-11 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 AM354_RS14045 09dac49c167c064e3cc954c6855884fb 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 23 34 1.6E-11 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 AM354_RS14045 09dac49c167c064e3cc954c6855884fb 153 Gene3D G3DSA:1.10.10.10 1 58 5.6E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS14045 09dac49c167c064e3cc954c6855884fb 153 Gene3D G3DSA:3.30.70.920 60 153 1.8E-20 T 29-03-2018 AM354_RS26225 b0279902edf43b02ab5e4d77c0acd942 1087 SUPERFAMILY SSF52540 462 525 1.1E-38 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS26225 b0279902edf43b02ab5e4d77c0acd942 1087 SUPERFAMILY SSF52540 561 712 1.1E-38 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS26225 b0279902edf43b02ab5e4d77c0acd942 1087 Pfam PF13604 AAA domain 355 542 8.6E-55 T 29-03-2018 AM354_RS26225 b0279902edf43b02ab5e4d77c0acd942 1087 Pfam PF03389 MobA/MobL family 18 229 7.5E-60 T 29-03-2018 IPR005053 MobA/MobL protein AM354_RS26225 b0279902edf43b02ab5e4d77c0acd942 1087 Gene3D G3DSA:3.40.50.300 97 528 6.0E-21 T 29-03-2018 AM354_RS26225 b0279902edf43b02ab5e4d77c0acd942 1087 TIGRFAM TIGR02768 TraA_Ti: Ti-type conjugative transfer relaxase TraA 1 829 0.0 T 29-03-2018 IPR014136 Ti-type conjugative transfer relaxase TraA AM354_RS26225 b0279902edf43b02ab5e4d77c0acd942 1087 SUPERFAMILY SSF52540 352 503 8.46E-22 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS26225 b0279902edf43b02ab5e4d77c0acd942 1087 Pfam PF13538 UvrD-like helicase C-terminal domain 662 704 1.0E-6 T 29-03-2018 IPR027785 UvrD-like helicase C-terminal domain AM354_RS02210 8a8fa7a673a3f449aa5e22075e99ea54 378 Pfam PF13353 4Fe-4S single cluster domain 20 103 5.7E-6 T 29-03-2018 AM354_RS02210 8a8fa7a673a3f449aa5e22075e99ea54 378 Hamap MF_00660 Coenzyme PQQ synthesis protein E [pqqE]. 1 378 189.37 T 29-03-2018 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria GO:0018189|GO:0051539 AM354_RS02210 8a8fa7a673a3f449aa5e22075e99ea54 378 PIRSF PIRSF037420 2 359 3.3E-128 T 29-03-2018 AM354_RS02210 8a8fa7a673a3f449aa5e22075e99ea54 378 SUPERFAMILY SSF102114 11 320 4.32E-74 T 29-03-2018 AM354_RS02210 8a8fa7a673a3f449aa5e22075e99ea54 378 SMART SM00729 13 220 0.0023 T 29-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 AM354_RS02210 8a8fa7a673a3f449aa5e22075e99ea54 378 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 19 30 - T 29-03-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 Reactome: R-HSA-947581 AM354_RS02210 8a8fa7a673a3f449aa5e22075e99ea54 378 Pfam PF04055 Radical SAM superfamily 19 172 3.0E-21 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AM354_RS02210 8a8fa7a673a3f449aa5e22075e99ea54 378 TIGRFAM TIGR02109 PQQ_syn_pqqE: coenzyme PQQ biosynthesis enzyme PqqE 8 368 4.6E-183 T 29-03-2018 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria GO:0018189|GO:0051539 AM354_RS02210 8a8fa7a673a3f449aa5e22075e99ea54 378 Gene3D G3DSA:3.20.20.70 10 302 3.4E-44 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS06675 3ab3fdbf07723aa9905dd4f04d8c8a41 237 SMART SM00862 155 231 4.7E-28 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS06675 3ab3fdbf07723aa9905dd4f04d8c8a41 237 SUPERFAMILY SSF52172 3 130 5.12E-40 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS06675 3ab3fdbf07723aa9905dd4f04d8c8a41 237 Gene3D G3DSA:3.40.50.2300 1 128 1.7E-36 T 29-03-2018 AM354_RS06675 3ab3fdbf07723aa9905dd4f04d8c8a41 237 Pfam PF00486 Transcriptional regulatory protein, C terminal 155 231 2.6E-27 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS06675 3ab3fdbf07723aa9905dd4f04d8c8a41 237 SUPERFAMILY SSF46894 128 232 1.28E-32 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS06675 3ab3fdbf07723aa9905dd4f04d8c8a41 237 Pfam PF00072 Response regulator receiver domain 7 116 1.6E-25 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS06675 3ab3fdbf07723aa9905dd4f04d8c8a41 237 SMART SM00448 5 116 1.3E-40 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS06675 3ab3fdbf07723aa9905dd4f04d8c8a41 237 Gene3D G3DSA:1.10.10.10 129 237 1.0E-34 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS03565 c66c2c6c8b6a7b0e7085133ea24346ae 682 Gene3D G3DSA:3.90.226.10 329 633 1.0E-55 T 29-03-2018 AM354_RS03565 c66c2c6c8b6a7b0e7085133ea24346ae 682 SMART SM00228 246 323 9.5E-10 T 29-03-2018 IPR001478 PDZ domain GO:0005515 AM354_RS03565 c66c2c6c8b6a7b0e7085133ea24346ae 682 SMART SM00245 326 531 2.5E-74 T 29-03-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 AM354_RS03565 c66c2c6c8b6a7b0e7085133ea24346ae 682 SUPERFAMILY SSF50156 216 343 6.37E-17 T 29-03-2018 IPR001478 PDZ domain GO:0005515 AM354_RS03565 c66c2c6c8b6a7b0e7085133ea24346ae 682 Pfam PF11818 C-terminal domain of tail specific protease (DUF3340) 534 667 1.5E-40 T 29-03-2018 IPR020992 Tail specific protease, C-terminal AM354_RS03565 c66c2c6c8b6a7b0e7085133ea24346ae 682 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 240 320 1.8E-14 T 29-03-2018 IPR001478 PDZ domain GO:0005515 AM354_RS03565 c66c2c6c8b6a7b0e7085133ea24346ae 682 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 194 551 1.2E-123 T 29-03-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 AM354_RS03565 c66c2c6c8b6a7b0e7085133ea24346ae 682 Pfam PF03572 Peptidase family S41 356 528 4.0E-51 T 29-03-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 AM354_RS03565 c66c2c6c8b6a7b0e7085133ea24346ae 682 Gene3D G3DSA:3.30.750.44 155 245 1.2E-21 T 29-03-2018 AM354_RS03565 c66c2c6c8b6a7b0e7085133ea24346ae 682 Gene3D G3DSA:2.30.42.10 246 328 2.2E-15 T 29-03-2018 AM354_RS03565 c66c2c6c8b6a7b0e7085133ea24346ae 682 SUPERFAMILY SSF52096 179 264 1.82E-67 T 29-03-2018 IPR029045 ClpP/crotonase-like domain AM354_RS03565 c66c2c6c8b6a7b0e7085133ea24346ae 682 SUPERFAMILY SSF52096 350 535 1.82E-67 T 29-03-2018 IPR029045 ClpP/crotonase-like domain AM354_RS06775 5bb9b5b6e7c7b4e027e9378374e0cc78 456 PIRSF PIRSF002746 1 456 3.7E-150 T 29-03-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AM354_RS06775 5bb9b5b6e7c7b4e027e9378374e0cc78 456 Pfam PF02447 GntP family permease 6 453 4.6E-148 T 29-03-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AM354_RS06775 5bb9b5b6e7c7b4e027e9378374e0cc78 456 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 6 453 6.3E-108 T 29-03-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AM354_RS12055 00440496eda50ff70efee816bbeecc3c 220 Pfam PF00072 Response regulator receiver domain 4 112 2.1E-24 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS12055 00440496eda50ff70efee816bbeecc3c 220 Gene3D G3DSA:1.10.10.10 124 220 4.8E-27 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS12055 00440496eda50ff70efee816bbeecc3c 220 SUPERFAMILY SSF52172 1 175 8.64E-39 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS12055 00440496eda50ff70efee816bbeecc3c 220 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 216 1.5E-20 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS12055 00440496eda50ff70efee816bbeecc3c 220 Gene3D G3DSA:3.40.50.2300 1 123 1.9E-33 T 29-03-2018 AM354_RS12055 00440496eda50ff70efee816bbeecc3c 220 SMART SM00862 145 216 3.4E-22 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS12055 00440496eda50ff70efee816bbeecc3c 220 SMART SM00448 1 112 2.5E-35 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS16805 8f0bf46fe3c25261ddaa138f9c5962df 260 SMART SM00342 171 253 4.3E-17 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS16805 8f0bf46fe3c25261ddaa138f9c5962df 260 Gene3D G3DSA:1.10.10.60 210 256 8.2E-10 T 29-03-2018 AM354_RS16805 8f0bf46fe3c25261ddaa138f9c5962df 260 Gene3D G3DSA:1.10.10.60 157 209 3.0E-8 T 29-03-2018 AM354_RS16805 8f0bf46fe3c25261ddaa138f9c5962df 260 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 222 237 5.4E-6 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM354_RS16805 8f0bf46fe3c25261ddaa138f9c5962df 260 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 237 253 5.4E-6 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM354_RS16805 8f0bf46fe3c25261ddaa138f9c5962df 260 SUPERFAMILY SSF46689 211 253 6.27E-8 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS16805 8f0bf46fe3c25261ddaa138f9c5962df 260 SUPERFAMILY SSF51182 12 197 1.64E-16 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS16805 8f0bf46fe3c25261ddaa138f9c5962df 260 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 206 249 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM354_RS16805 8f0bf46fe3c25261ddaa138f9c5962df 260 Gene3D G3DSA:2.60.120.10 4 156 1.7E-7 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS16805 8f0bf46fe3c25261ddaa138f9c5962df 260 Pfam PF02311 AraC-like ligand binding domain 21 136 5.7E-9 T 29-03-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AM354_RS16805 8f0bf46fe3c25261ddaa138f9c5962df 260 Pfam PF12833 Helix-turn-helix domain 177 253 4.0E-19 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS16510 f09b16268c5695e3921e3b2898843ee5 255 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 53 66 - T 29-03-2018 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 AM354_RS16510 f09b16268c5695e3921e3b2898843ee5 255 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 31 251 8.2E-43 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM354_RS16510 f09b16268c5695e3921e3b2898843ee5 255 SUPERFAMILY SSF53850 4 251 3.8E-52 T 29-03-2018 AM354_RS16510 f09b16268c5695e3921e3b2898843ee5 255 SMART SM00062 30 254 8.8E-41 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM354_RS16510 f09b16268c5695e3921e3b2898843ee5 255 Gene3D G3DSA:3.40.190.10 178 255 0.0033 T 29-03-2018 AM354_RS16510 f09b16268c5695e3921e3b2898843ee5 255 Gene3D G3DSA:3.40.190.10 19 177 4.9E-34 T 29-03-2018 AM354_RS04360 6d1288013cf8b315dd6b5fefedf92e5d 315 SUPERFAMILY SSF53271 69 306 3.92E-67 T 29-03-2018 IPR029057 Phosphoribosyltransferase-like AM354_RS04360 6d1288013cf8b315dd6b5fefedf92e5d 315 SMART SM01400 4 121 5.7E-76 T 29-03-2018 AM354_RS04360 6d1288013cf8b315dd6b5fefedf92e5d 315 Pfam PF14572 Phosphoribosyl synthetase-associated domain 204 313 3.1E-30 T 29-03-2018 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 AM354_RS04360 6d1288013cf8b315dd6b5fefedf92e5d 315 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 4 314 7.0E-127 T 29-03-2018 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 AM354_RS04360 6d1288013cf8b315dd6b5fefedf92e5d 315 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 129 144 - T 29-03-2018 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 AM354_RS04360 6d1288013cf8b315dd6b5fefedf92e5d 315 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 4 121 1.9E-49 T 29-03-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 AM354_RS04360 6d1288013cf8b315dd6b5fefedf92e5d 315 Gene3D G3DSA:3.40.50.2020 1 158 4.0E-66 T 29-03-2018 AM354_RS04360 6d1288013cf8b315dd6b5fefedf92e5d 315 Hamap MF_00583_B Ribose-phosphate pyrophosphokinase [prs]. 4 314 49.867 T 29-03-2018 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 AM354_RS04360 6d1288013cf8b315dd6b5fefedf92e5d 315 Gene3D G3DSA:3.40.50.2020 159 307 7.6E-43 T 29-03-2018 AM354_RS21085 d94e87f8e91b69e549a8474e1d280feb 354 Pfam PF09925 Predicted membrane protein (DUF2157) 18 168 6.0E-7 T 29-03-2018 IPR018677 Domain of unknown function DUF2157 AM354_RS16475 89c3e50ceb14122b2d57c209db3a0fd0 170 Gene3D G3DSA:1.10.10.10 1 93 9.3E-26 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS16475 89c3e50ceb14122b2d57c209db3a0fd0 170 SUPERFAMILY SSF46785 12 144 1.51E-33 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS16475 89c3e50ceb14122b2d57c209db3a0fd0 170 Pfam PF01475 Ferric uptake regulator family 20 138 9.8E-16 T 29-03-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 AM354_RS07815 228c70c4f4fe58a1f5dafdd3fc32c134 720 SUPERFAMILY SSF56935 54 720 6.41E-107 T 29-03-2018 AM354_RS07815 228c70c4f4fe58a1f5dafdd3fc32c134 720 Pfam PF00593 TonB dependent receptor 262 712 6.5E-44 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS07815 228c70c4f4fe58a1f5dafdd3fc32c134 720 Gene3D G3DSA:2.170.130.10 51 181 1.4E-19 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS07815 228c70c4f4fe58a1f5dafdd3fc32c134 720 Pfam PF07715 TonB-dependent Receptor Plug Domain 77 173 7.8E-14 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS07815 228c70c4f4fe58a1f5dafdd3fc32c134 720 Gene3D G3DSA:2.40.170.20 189 720 4.3E-72 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS14415 4ef7b33b068f41688b6f6309d7d61119 398 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 241 250 - T 29-03-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 AM354_RS14415 4ef7b33b068f41688b6f6309d7d61119 398 Gene3D G3DSA:3.90.1150.10 20 99 5.9E-17 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS14415 4ef7b33b068f41688b6f6309d7d61119 398 Gene3D G3DSA:3.90.1150.10 278 397 2.1E-43 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS14415 4ef7b33b068f41688b6f6309d7d61119 398 SUPERFAMILY SSF53383 5 396 2.99E-126 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS14415 4ef7b33b068f41688b6f6309d7d61119 398 Gene3D G3DSA:3.40.640.10 100 277 1.4E-29 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS14415 4ef7b33b068f41688b6f6309d7d61119 398 Pfam PF00155 Aminotransferase class I and II 43 386 8.2E-77 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM354_RS14415 4ef7b33b068f41688b6f6309d7d61119 398 TIGRFAM TIGR01822 2am3keto_CoA: glycine C-acetyltransferase 5 397 5.9E-218 T 29-03-2018 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|Reactome: R-HSA-8849175 AM354_RS14415 4ef7b33b068f41688b6f6309d7d61119 398 Hamap MF_00985 2-amino-3-ketobutyrate coenzyme A ligase [kbl]. 2 395 53.679 T 29-03-2018 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|Reactome: R-HSA-8849175 AM354_RS10665 0c549edfb8dec5c9c6ecafffac7ddf1c 490 PIRSF PIRSF002457 3 490 3.4E-135 T 29-03-2018 IPR030676 Citrate carrier CitT-related AM354_RS10665 0c549edfb8dec5c9c6ecafffac7ddf1c 490 Pfam PF00939 Sodium:sulfate symporter transmembrane region 13 490 1.8E-137 T 29-03-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 AM354_RS10665 0c549edfb8dec5c9c6ecafffac7ddf1c 490 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 27 484 3.8E-114 T 29-03-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 AM354_RS19315 4b689165302d7201cc259ab524b1c04f 449 Pfam PF07690 Major Facilitator Superfamily 29 309 5.1E-35 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS19315 4b689165302d7201cc259ab524b1c04f 449 SUPERFAMILY SSF103473 10 438 1.57E-80 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS19315 4b689165302d7201cc259ab524b1c04f 449 Gene3D G3DSA:1.20.1250.20 13 214 8.6E-35 T 29-03-2018 AM354_RS19315 4b689165302d7201cc259ab524b1c04f 449 ProSitePatterns PS00217 Sugar transport proteins signature 2. 120 145 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM354_RS19315 4b689165302d7201cc259ab524b1c04f 449 Gene3D G3DSA:1.20.1250.20 235 443 2.4E-27 T 29-03-2018 AM354_RS04825 a7b32a9014b447d5fab13cd471adcb09 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 2.9E-15 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS04825 a7b32a9014b447d5fab13cd471adcb09 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 2.9E-15 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS04825 a7b32a9014b447d5fab13cd471adcb09 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 2.9E-15 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS04825 a7b32a9014b447d5fab13cd471adcb09 244 Gene3D G3DSA:3.40.50.720 158 242 6.7E-27 T 29-03-2018 AM354_RS04825 a7b32a9014b447d5fab13cd471adcb09 244 SUPERFAMILY SSF51735 4 243 6.33E-86 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS04825 a7b32a9014b447d5fab13cd471adcb09 244 Gene3D G3DSA:3.40.50.720 2 157 5.5E-50 T 29-03-2018 AM354_RS04825 a7b32a9014b447d5fab13cd471adcb09 244 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 8 242 1.2E-100 T 29-03-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AM354_RS04825 a7b32a9014b447d5fab13cd471adcb09 244 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM354_RS04825 a7b32a9014b447d5fab13cd471adcb09 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 4.0E-49 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS04825 a7b32a9014b447d5fab13cd471adcb09 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 4.0E-49 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS04825 a7b32a9014b447d5fab13cd471adcb09 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 4.0E-49 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS04825 a7b32a9014b447d5fab13cd471adcb09 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 4.0E-49 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS04825 a7b32a9014b447d5fab13cd471adcb09 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 4.0E-49 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS04825 a7b32a9014b447d5fab13cd471adcb09 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 205 225 4.0E-49 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS04825 a7b32a9014b447d5fab13cd471adcb09 244 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 187 1.4E-5 T 29-03-2018 AM354_RS04825 a7b32a9014b447d5fab13cd471adcb09 244 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 241 3.2E-66 T 29-03-2018 AM354_RS22010 47c876d25cd1f750ebcefbf62cc2ce3a 179 Pfam PF02082 Transcriptional regulator 4 83 2.1E-24 T 29-03-2018 IPR000944 Transcription regulator Rrf2-type AM354_RS22010 47c876d25cd1f750ebcefbf62cc2ce3a 179 Gene3D G3DSA:1.10.10.10 1 151 1.8E-29 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS22010 47c876d25cd1f750ebcefbf62cc2ce3a 179 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 29-03-2018 IPR030489 Transcription regulator Rrf2-type, conserved site AM354_RS22010 47c876d25cd1f750ebcefbf62cc2ce3a 179 SUPERFAMILY SSF46785 4 144 9.49E-32 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS22010 47c876d25cd1f750ebcefbf62cc2ce3a 179 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 4 139 3.0E-28 T 29-03-2018 IPR000944 Transcription regulator Rrf2-type AM354_RS11270 78e2bb993ce62517ec30fb9844baddf0 210 Gene3D G3DSA:3.90.850.10 1 210 4.9E-45 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AM354_RS11270 78e2bb993ce62517ec30fb9844baddf0 210 TIGRFAM TIGR02305 HpaG-N-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit 3 203 1.6E-78 T 29-03-2018 IPR012686 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit GO:0008704|GO:0018800 KEGG: 00350+5.3.3.10+4.1.1.68 AM354_RS11270 78e2bb993ce62517ec30fb9844baddf0 210 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 5 203 2.1E-39 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AM354_RS11270 78e2bb993ce62517ec30fb9844baddf0 210 SUPERFAMILY SSF56529 2 204 9.68E-53 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AM354_RS11575 9e6dcdf0d235c2ee2a2f3a2502aa41e1 480 SUPERFAMILY SSF55604 8 79 2.22E-21 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM354_RS11575 9e6dcdf0d235c2ee2a2f3a2502aa41e1 480 Pfam PF02378 Phosphotransferase system, EIIC 113 396 8.1E-40 T 29-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AM354_RS11575 9e6dcdf0d235c2ee2a2f3a2502aa41e1 480 Pfam PF00367 phosphotransferase system, EIIB 11 43 1.2E-15 T 29-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AM354_RS11575 9e6dcdf0d235c2ee2a2f3a2502aa41e1 480 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 21 38 - T 29-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AM354_RS11575 9e6dcdf0d235c2ee2a2f3a2502aa41e1 480 Gene3D G3DSA:3.30.1360.60 6 81 7.1E-28 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM354_RS15665 68297593d7ed3ccc97de4df80c9b6a64 711 ProDom PD147088 MEMBRANE INNER TRANSMEMBRANE IGAA HOMOLOG DEHYDROGENASE GROWTH ATTENUATOR INTRACELLULAR GENOME 23 698 0.0 T 29-03-2018 IPR010771 Intracellular growth attenuator IgaA GO:0009276|GO:0016021 AM354_RS15665 68297593d7ed3ccc97de4df80c9b6a64 711 Pfam PF07095 Intracellular growth attenuator protein IgaA 1 705 0.0 T 29-03-2018 IPR010771 Intracellular growth attenuator IgaA GO:0009276|GO:0016021 AM354_RS25730 bdfe41d899cf185210cc6637243c39ce 225 SUPERFAMILY SSF103501 1 224 7.06E-73 T 29-03-2018 IPR023234 NarG-like domain AM354_RS25730 bdfe41d899cf185210cc6637243c39ce 225 Pfam PF02665 Nitrate reductase gamma subunit 5 224 1.4E-82 T 29-03-2018 IPR023234 NarG-like domain AM354_RS25730 bdfe41d899cf185210cc6637243c39ce 225 TIGRFAM TIGR00351 narI: respiratory nitrate reductase, gamma subunit 1 225 1.4E-116 T 29-03-2018 IPR003816 Nitrate reductase, gamma subunit GO:0008940|GO:0009325|GO:0055114 KEGG: 00910+1.7.99.4 AM354_RS25730 bdfe41d899cf185210cc6637243c39ce 225 Gene3D G3DSA:1.20.950.20 1 216 8.7E-46 T 29-03-2018 AM354_RS11720 4dfec14800e6935c51e751274d72219a 339 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 10 150 2.6E-47 T 29-03-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 AM354_RS11720 4dfec14800e6935c51e751274d72219a 339 PRINTS PR00102 Ornithine carbamoyltransferase signature 53 67 3.3E-32 T 29-03-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AM354_RS11720 4dfec14800e6935c51e751274d72219a 339 PRINTS PR00102 Ornithine carbamoyltransferase signature 86 99 3.3E-32 T 29-03-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AM354_RS11720 4dfec14800e6935c51e751274d72219a 339 PRINTS PR00102 Ornithine carbamoyltransferase signature 126 140 3.3E-32 T 29-03-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AM354_RS11720 4dfec14800e6935c51e751274d72219a 339 PRINTS PR00102 Ornithine carbamoyltransferase signature 232 242 3.3E-32 T 29-03-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AM354_RS11720 4dfec14800e6935c51e751274d72219a 339 PRINTS PR00102 Ornithine carbamoyltransferase signature 314 325 3.3E-32 T 29-03-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AM354_RS11720 4dfec14800e6935c51e751274d72219a 339 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 159 333 3.0E-57 T 29-03-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 AM354_RS11720 4dfec14800e6935c51e751274d72219a 339 Gene3D G3DSA:3.40.50.1370 8 166 2.9E-57 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AM354_RS11720 4dfec14800e6935c51e751274d72219a 339 Gene3D G3DSA:3.40.50.1370 167 337 9.4E-52 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AM354_RS11720 4dfec14800e6935c51e751274d72219a 339 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 9 336 84.063 T 29-03-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 AM354_RS11720 4dfec14800e6935c51e751274d72219a 339 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 10 335 4.1E-136 T 29-03-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AM354_RS11720 4dfec14800e6935c51e751274d72219a 339 SUPERFAMILY SSF53671 7 336 7.46E-100 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AM354_RS11720 4dfec14800e6935c51e751274d72219a 339 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 137 148 2.6E-26 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AM354_RS11720 4dfec14800e6935c51e751274d72219a 339 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 55 74 2.6E-26 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AM354_RS11720 4dfec14800e6935c51e751274d72219a 339 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 300 323 2.6E-26 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AM354_RS11720 4dfec14800e6935c51e751274d72219a 339 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 270 279 2.6E-26 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AM354_RS11720 4dfec14800e6935c51e751274d72219a 339 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 55 62 - T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AM354_RS11165 2a9e744f78237c0aaedc1973dae75e40 303 Gene3D G3DSA:3.40.190.10 91 176 4.3E-13 T 29-03-2018 AM354_RS11165 2a9e744f78237c0aaedc1973dae75e40 303 SUPERFAMILY SSF46785 5 89 1.85E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS11165 2a9e744f78237c0aaedc1973dae75e40 303 SUPERFAMILY SSF53850 91 296 5.25E-45 T 29-03-2018 AM354_RS11165 2a9e744f78237c0aaedc1973dae75e40 303 Pfam PF03466 LysR substrate binding domain 90 294 1.3E-42 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS11165 2a9e744f78237c0aaedc1973dae75e40 303 Gene3D G3DSA:3.40.190.10 177 265 2.3E-26 T 29-03-2018 AM354_RS11165 2a9e744f78237c0aaedc1973dae75e40 303 Gene3D G3DSA:1.10.10.10 4 86 3.0E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS11165 2a9e744f78237c0aaedc1973dae75e40 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 3.1E-16 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS16455 b08a338888fc0ea95e22e77f7f4f2878 122 Gene3D G3DSA:1.10.3830.10 7 119 1.4E-41 T 29-03-2018 IPR000829 DAGK family GO:0004143|GO:0008654|GO:0016020 KEGG: 00500+2.7.1.10|KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 AM354_RS16455 b08a338888fc0ea95e22e77f7f4f2878 122 ProSitePatterns PS01069 Prokaryotic diacylglycerol kinase signature. 70 81 - T 29-03-2018 IPR000829 DAGK family GO:0004143|GO:0008654|GO:0016020 KEGG: 00500+2.7.1.10|KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 AM354_RS16455 b08a338888fc0ea95e22e77f7f4f2878 122 Pfam PF01219 Prokaryotic diacylglycerol kinase 16 117 9.3E-35 T 29-03-2018 IPR000829 DAGK family GO:0004143|GO:0008654|GO:0016020 KEGG: 00500+2.7.1.10|KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 AM354_RS17765 2ea5785c005f53f8d04ff592c3f849f6 141 SUPERFAMILY SSF52833 3 137 1.14E-39 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS17765 2ea5785c005f53f8d04ff592c3f849f6 141 Pfam PF03960 ArsC family 7 114 5.3E-20 T 29-03-2018 IPR006660 Arsenate reductase-like AM354_RS17765 2ea5785c005f53f8d04ff592c3f849f6 141 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 4 116 3.6E-41 T 29-03-2018 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 AM354_RS17765 2ea5785c005f53f8d04ff592c3f849f6 141 Gene3D G3DSA:3.40.30.10 1 141 3.1E-45 T 29-03-2018 AM354_RS01905 26cc93d361efc39a09675a32af5aae26 287 Gene3D G3DSA:3.40.190.10 173 255 6.7E-11 T 29-03-2018 AM354_RS01905 26cc93d361efc39a09675a32af5aae26 287 Pfam PF03466 LysR substrate binding domain 96 283 9.4E-26 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS01905 26cc93d361efc39a09675a32af5aae26 287 SUPERFAMILY SSF46785 7 114 2.95E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS01905 26cc93d361efc39a09675a32af5aae26 287 Gene3D G3DSA:3.40.190.10 92 172 1.8E-11 T 29-03-2018 AM354_RS01905 26cc93d361efc39a09675a32af5aae26 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 4.6E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS01905 26cc93d361efc39a09675a32af5aae26 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 4.6E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS01905 26cc93d361efc39a09675a32af5aae26 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 4.6E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS01905 26cc93d361efc39a09675a32af5aae26 287 SUPERFAMILY SSF53850 95 284 2.35E-29 T 29-03-2018 AM354_RS01905 26cc93d361efc39a09675a32af5aae26 287 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 66 9.8E-21 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS01905 26cc93d361efc39a09675a32af5aae26 287 Gene3D G3DSA:1.10.10.10 1 88 5.9E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS25480 c7ed5fdcb2b7d6f8a16e91b1b2427d70 136 PIRSF PIRSF039090 1 136 2.9E-45 T 29-03-2018 IPR003713 Flagellar protein FliS GO:0044780 AM354_RS25480 c7ed5fdcb2b7d6f8a16e91b1b2427d70 136 Pfam PF02561 Flagellar protein FliS 8 125 3.1E-40 T 29-03-2018 IPR003713 Flagellar protein FliS GO:0044780 AM354_RS25480 c7ed5fdcb2b7d6f8a16e91b1b2427d70 136 Gene3D G3DSA:1.20.120.340 2 129 1.6E-43 T 29-03-2018 AM354_RS25480 c7ed5fdcb2b7d6f8a16e91b1b2427d70 136 SUPERFAMILY SSF101116 8 130 6.28E-41 T 29-03-2018 IPR003713 Flagellar protein FliS GO:0044780 AM354_RS25480 c7ed5fdcb2b7d6f8a16e91b1b2427d70 136 TIGRFAM TIGR00208 fliS: flagellar protein FliS 1 125 2.6E-39 T 29-03-2018 IPR003713 Flagellar protein FliS GO:0044780 AM354_RS19360 6102cff7666e2d421df61512bd002d1c 431 SUPERFAMILY SSF103473 13 421 9.81E-91 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS19360 6102cff7666e2d421df61512bd002d1c 431 Gene3D G3DSA:1.20.1250.20 10 215 4.7E-38 T 29-03-2018 AM354_RS19360 6102cff7666e2d421df61512bd002d1c 431 PIRSF PIRSF002808 1 430 4.6E-35 T 29-03-2018 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 AM354_RS19360 6102cff7666e2d421df61512bd002d1c 431 Pfam PF07690 Major Facilitator Superfamily 26 387 2.9E-59 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS19360 6102cff7666e2d421df61512bd002d1c 431 Gene3D G3DSA:1.20.1250.20 233 430 1.6E-29 T 29-03-2018 AM354_RS23680 b7444423658d0121053b7b272b7d0af0 366 SUPERFAMILY SSF55073 217 364 9.42E-19 T 29-03-2018 IPR029787 Nucleotide cyclase AM354_RS23680 b7444423658d0121053b7b272b7d0af0 366 Pfam PF00990 Diguanylate cyclase, GGDEF domain 213 363 8.8E-19 T 29-03-2018 IPR000160 GGDEF domain AM354_RS23680 b7444423658d0121053b7b272b7d0af0 366 SMART SM00267 201 365 2.8E-7 T 29-03-2018 IPR000160 GGDEF domain AM354_RS23680 b7444423658d0121053b7b272b7d0af0 366 Gene3D G3DSA:3.30.70.270 206 366 1.7E-23 T 29-03-2018 AM354_RS23680 b7444423658d0121053b7b272b7d0af0 366 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 210 363 2.3E-14 T 29-03-2018 IPR000160 GGDEF domain AM354_RS05180 7d0d0013a6369803feae4e016ec23f5c 306 SMART SM01130 7 295 3.9E-89 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM354_RS05180 7d0d0013a6369803feae4e016ec23f5c 306 Gene3D G3DSA:3.20.20.70 6 297 6.5E-79 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS05180 7d0d0013a6369803feae4e016ec23f5c 306 Pfam PF00701 Dihydrodipicolinate synthetase family 10 293 6.3E-60 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM354_RS05180 7d0d0013a6369803feae4e016ec23f5c 306 PIRSF PIRSF001365 3 302 6.4E-77 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM354_RS05180 7d0d0013a6369803feae4e016ec23f5c 306 PRINTS PR00146 Dihydrodipicolinate synthase signature 41 62 5.2E-11 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM354_RS05180 7d0d0013a6369803feae4e016ec23f5c 306 PRINTS PR00146 Dihydrodipicolinate synthase signature 134 151 5.2E-11 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM354_RS05180 7d0d0013a6369803feae4e016ec23f5c 306 PRINTS PR00146 Dihydrodipicolinate synthase signature 77 95 5.2E-11 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM354_RS05180 7d0d0013a6369803feae4e016ec23f5c 306 SUPERFAMILY SSF51569 5 293 4.08E-83 T 29-03-2018 AM354_RS21230 5c0e310e7fe5102d7a11aa51d20abb6a 404 TIGRFAM TIGR02006 IscS: cysteine desulfurase IscS 1 404 1.6E-234 T 29-03-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 AM354_RS21230 5c0e310e7fe5102d7a11aa51d20abb6a 404 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 197 216 - T 29-03-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site AM354_RS21230 5c0e310e7fe5102d7a11aa51d20abb6a 404 PIRSF PIRSF005572 2 384 1.7E-144 T 29-03-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 AM354_RS21230 5c0e310e7fe5102d7a11aa51d20abb6a 404 SUPERFAMILY SSF53383 5 390 3.63E-116 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS21230 5c0e310e7fe5102d7a11aa51d20abb6a 404 Gene3D G3DSA:3.90.1150.10 238 404 9.8E-53 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS21230 5c0e310e7fe5102d7a11aa51d20abb6a 404 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 1 395 56.129 T 29-03-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 AM354_RS21230 5c0e310e7fe5102d7a11aa51d20abb6a 404 Gene3D G3DSA:3.40.640.10 1 237 7.5E-52 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS21230 5c0e310e7fe5102d7a11aa51d20abb6a 404 Pfam PF00266 Aminotransferase class-V 5 368 1.4E-88 T 29-03-2018 IPR000192 Aminotransferase class V domain AM354_RS10595 4f05c3beb261c304792ddc772c409735 587 SUPERFAMILY SSF56601 234 562 4.35E-86 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM354_RS10595 4f05c3beb261c304792ddc772c409735 587 Gene3D G3DSA:3.90.1310.10 36 234 7.8E-44 T 29-03-2018 AM354_RS10595 4f05c3beb261c304792ddc772c409735 587 Pfam PF00905 Penicillin binding protein transpeptidase domain 259 553 3.6E-83 T 29-03-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AM354_RS10595 4f05c3beb261c304792ddc772c409735 587 Pfam PF03717 Penicillin-binding Protein dimerisation domain 67 219 3.4E-18 T 29-03-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AM354_RS10595 4f05c3beb261c304792ddc772c409735 587 Gene3D G3DSA:3.40.710.10 235 586 5.0E-79 T 29-03-2018 AM354_RS10595 4f05c3beb261c304792ddc772c409735 587 SUPERFAMILY SSF56519 62 233 1.1E-44 T 29-03-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AM354_RS20515 61ee14ebf50b8309dee182b72521c521 134 SUPERFAMILY SSF52218 1 132 1.08E-21 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS20515 61ee14ebf50b8309dee182b72521c521 134 Hamap MF_00128 Protein NrdI [nrdI]. 3 133 35.055 T 29-03-2018 IPR020852 Ribonucleotide reductase, class Ib, NrdI, bacterial AM354_RS20515 61ee14ebf50b8309dee182b72521c521 134 TIGRFAM TIGR00333 nrdI: nrdI protein 5 132 6.4E-50 T 29-03-2018 IPR004465 Ribonucleotide reductase Class Ib, NrdI AM354_RS20515 61ee14ebf50b8309dee182b72521c521 134 Gene3D G3DSA:3.40.50.360 4 132 1.3E-22 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS20515 61ee14ebf50b8309dee182b72521c521 134 Pfam PF07972 NrdI Flavodoxin like 5 124 4.0E-46 T 29-03-2018 IPR004465 Ribonucleotide reductase Class Ib, NrdI AM354_RS20515 61ee14ebf50b8309dee182b72521c521 134 PIRSF PIRSF005087 1 134 4.5E-53 T 29-03-2018 IPR004465 Ribonucleotide reductase Class Ib, NrdI AM354_RS08145 5332cade9b74dc5727838f29bf2cf85d 211 Pfam PF03551 Transcriptional regulator PadR-like family 59 128 2.5E-18 T 29-03-2018 IPR005149 Transcription regulator PadR, N-terminal AM354_RS08145 5332cade9b74dc5727838f29bf2cf85d 211 SUPERFAMILY SSF46785 54 164 5.39E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS08145 5332cade9b74dc5727838f29bf2cf85d 211 Gene3D G3DSA:1.10.10.10 43 152 2.9E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS06195 cbc4af91d440387298de30d5672d89ae 196 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 3 196 3.6E-72 T 29-03-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 AM354_RS06195 cbc4af91d440387298de30d5672d89ae 196 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 2 196 33.926 T 29-03-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 AM354_RS06195 cbc4af91d440387298de30d5672d89ae 196 Gene3D G3DSA:3.40.50.880 1 196 2.9E-45 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS06195 cbc4af91d440387298de30d5672d89ae 196 PIRSF PIRSF000495 1 196 4.8E-66 T 29-03-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 AM354_RS06195 cbc4af91d440387298de30d5672d89ae 196 SUPERFAMILY SSF52317 3 195 3.25E-55 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS06195 cbc4af91d440387298de30d5672d89ae 196 Pfam PF00117 Glutamine amidotransferase class-I 5 194 1.6E-19 T 29-03-2018 IPR017926 Glutamine amidotransferase AM354_RS06195 cbc4af91d440387298de30d5672d89ae 196 PRINTS PR00096 Glutamine amidotransferase superfamily signature 72 83 9.7E-5 T 29-03-2018 AM354_RS06195 cbc4af91d440387298de30d5672d89ae 196 PRINTS PR00096 Glutamine amidotransferase superfamily signature 174 187 9.7E-5 T 29-03-2018 AM354_RS07665 cac81827b58101b62defe090485e6387 578 Gene3D G3DSA:3.40.50.300 327 563 8.3E-62 T 29-03-2018 AM354_RS07665 cac81827b58101b62defe090485e6387 578 SUPERFAMILY SSF52540 325 550 3.41E-62 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS07665 cac81827b58101b62defe090485e6387 578 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS07665 cac81827b58101b62defe090485e6387 578 Pfam PF00005 ABC transporter 27 166 9.2E-27 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS07665 cac81827b58101b62defe090485e6387 578 Pfam PF00005 ABC transporter 347 490 4.5E-27 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS07665 cac81827b58101b62defe090485e6387 578 Gene3D G3DSA:3.40.50.300 1 237 1.2E-52 T 29-03-2018 AM354_RS07665 cac81827b58101b62defe090485e6387 578 SMART SM00382 33 214 9.3E-10 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS07665 cac81827b58101b62defe090485e6387 578 SMART SM00382 355 536 1.7E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS07665 cac81827b58101b62defe090485e6387 578 SUPERFAMILY SSF52540 6 228 1.41E-53 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS20550 c26d10bcc81bc8421df0cfba931b5897 460 Gene3D G3DSA:1.20.1250.20 3 194 6.7E-28 T 29-03-2018 AM354_RS20550 c26d10bcc81bc8421df0cfba931b5897 460 SUPERFAMILY SSF103473 3 189 2.75E-58 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS20550 c26d10bcc81bc8421df0cfba931b5897 460 SUPERFAMILY SSF103473 241 449 2.75E-58 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS20550 c26d10bcc81bc8421df0cfba931b5897 460 Pfam PF07690 Major Facilitator Superfamily 12 402 7.0E-48 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS20550 c26d10bcc81bc8421df0cfba931b5897 460 Gene3D G3DSA:1.20.1250.20 245 460 2.7E-26 T 29-03-2018 AM354_RS05130 871cd4c3c47621b6959b36e3942bd213 218 SUPERFAMILY SSF52172 3 131 2.99E-33 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS05130 871cd4c3c47621b6959b36e3942bd213 218 SUPERFAMILY SSF46894 136 210 3.23E-19 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS05130 871cd4c3c47621b6959b36e3942bd213 218 SMART SM00448 2 115 4.9E-30 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS05130 871cd4c3c47621b6959b36e3942bd213 218 Pfam PF00072 Response regulator receiver domain 4 115 1.2E-30 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS05130 871cd4c3c47621b6959b36e3942bd213 218 Gene3D G3DSA:3.40.50.2300 1 126 3.7E-34 T 29-03-2018 AM354_RS05130 871cd4c3c47621b6959b36e3942bd213 218 Gene3D G3DSA:1.10.10.10 127 213 1.4E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS05130 871cd4c3c47621b6959b36e3942bd213 218 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS05130 871cd4c3c47621b6959b36e3942bd213 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 7.0E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS05130 871cd4c3c47621b6959b36e3942bd213 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 7.0E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS05130 871cd4c3c47621b6959b36e3942bd213 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 7.0E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS05130 871cd4c3c47621b6959b36e3942bd213 218 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 203 2.5E-19 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS05130 871cd4c3c47621b6959b36e3942bd213 218 SMART SM00421 146 203 1.5E-18 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS07700 3ab1670bda5a9e085c0ed99627251f6b 171 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 12 152 1.4E-38 T 29-03-2018 IPR001453 MoaB/Mog domain AM354_RS07700 3ab1670bda5a9e085c0ed99627251f6b 171 Gene3D G3DSA:3.40.980.10 6 171 2.2E-38 T 29-03-2018 IPR001453 MoaB/Mog domain AM354_RS07700 3ab1670bda5a9e085c0ed99627251f6b 171 Pfam PF00994 Probable molybdopterin binding domain 14 156 1.5E-36 T 29-03-2018 IPR001453 MoaB/Mog domain AM354_RS07700 3ab1670bda5a9e085c0ed99627251f6b 171 TIGRFAM TIGR02667 moaB_proteo: molybdenum cofactor biosynthesis protein B 7 169 3.4E-84 T 29-03-2018 IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria GO:0006777 AM354_RS07700 3ab1670bda5a9e085c0ed99627251f6b 171 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 72 85 - T 29-03-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 AM354_RS07700 3ab1670bda5a9e085c0ed99627251f6b 171 SUPERFAMILY SSF53218 8 168 1.7E-49 T 29-03-2018 IPR001453 MoaB/Mog domain AM354_RS07700 3ab1670bda5a9e085c0ed99627251f6b 171 SMART SM00852 14 158 1.0E-33 T 29-03-2018 IPR001453 MoaB/Mog domain AM354_RS07700 3ab1670bda5a9e085c0ed99627251f6b 171 PIRSF PIRSF006443 1 166 1.3E-64 T 29-03-2018 IPR012245 Molybdenum cofactor biosynthesis protein MoaB GO:0006777 AM354_RS11415 59a249cc8f1a1264eb06f8ed9811f572 291 Gene3D G3DSA:3.20.80.10 120 282 9.5E-15 T 29-03-2018 IPR011256 Regulatory factor, effector binding domain AM354_RS11415 59a249cc8f1a1264eb06f8ed9811f572 291 Pfam PF12833 Helix-turn-helix domain 27 105 1.2E-20 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS11415 59a249cc8f1a1264eb06f8ed9811f572 291 SMART SM00871 126 282 1.5E-6 T 29-03-2018 IPR010499 Bacterial transcription activator, effector binding AM354_RS11415 59a249cc8f1a1264eb06f8ed9811f572 291 SUPERFAMILY SSF46689 57 109 6.31E-12 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS11415 59a249cc8f1a1264eb06f8ed9811f572 291 Gene3D G3DSA:1.10.10.60 1 57 3.1E-16 T 29-03-2018 AM354_RS11415 59a249cc8f1a1264eb06f8ed9811f572 291 Gene3D G3DSA:1.10.10.60 58 119 3.6E-14 T 29-03-2018 AM354_RS11415 59a249cc8f1a1264eb06f8ed9811f572 291 SUPERFAMILY SSF55136 123 282 7.85E-25 T 29-03-2018 AM354_RS11415 59a249cc8f1a1264eb06f8ed9811f572 291 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 58 100 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM354_RS11415 59a249cc8f1a1264eb06f8ed9811f572 291 Pfam PF06445 GyrI-like small molecule binding domain 129 282 6.7E-11 T 29-03-2018 IPR029442 GyrI-like small molecule binding domain AM354_RS11415 59a249cc8f1a1264eb06f8ed9811f572 291 SMART SM00342 21 104 1.1E-29 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS11415 59a249cc8f1a1264eb06f8ed9811f572 291 SUPERFAMILY SSF46689 5 55 2.24E-10 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS15625 8d74fe995ca49599e0d24df6a5a0e460 239 SUPERFAMILY SSF46894 132 234 2.07E-26 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS15625 8d74fe995ca49599e0d24df6a5a0e460 239 Pfam PF00072 Response regulator receiver domain 7 117 1.3E-29 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS15625 8d74fe995ca49599e0d24df6a5a0e460 239 Gene3D G3DSA:3.40.50.2300 2 125 4.1E-38 T 29-03-2018 AM354_RS15625 8d74fe995ca49599e0d24df6a5a0e460 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 232 2.2E-22 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS15625 8d74fe995ca49599e0d24df6a5a0e460 239 Gene3D G3DSA:1.10.10.10 126 239 7.0E-29 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS15625 8d74fe995ca49599e0d24df6a5a0e460 239 SMART SM00448 5 116 1.2E-44 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS15625 8d74fe995ca49599e0d24df6a5a0e460 239 SUPERFAMILY SSF52172 3 126 1.15E-41 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS15625 8d74fe995ca49599e0d24df6a5a0e460 239 SMART SM00862 156 232 1.7E-23 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS10220 782f4705b528c9d69607519c81a31cc5 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 3.3E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS10220 782f4705b528c9d69607519c81a31cc5 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 3.3E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS10220 782f4705b528c9d69607519c81a31cc5 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 3.3E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS10220 782f4705b528c9d69607519c81a31cc5 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 3.3E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS10220 782f4705b528c9d69607519c81a31cc5 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 3.3E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS10220 782f4705b528c9d69607519c81a31cc5 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 3.3E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS10220 782f4705b528c9d69607519c81a31cc5 252 Gene3D G3DSA:3.40.50.720 39 252 6.8E-64 T 29-03-2018 AM354_RS10220 782f4705b528c9d69607519c81a31cc5 252 Gene3D G3DSA:3.40.50.720 1 38 2.0E-8 T 29-03-2018 AM354_RS10220 782f4705b528c9d69607519c81a31cc5 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 4.3E-9 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS10220 782f4705b528c9d69607519c81a31cc5 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 4.3E-9 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS10220 782f4705b528c9d69607519c81a31cc5 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 4.3E-9 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS10220 782f4705b528c9d69607519c81a31cc5 252 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM354_RS10220 782f4705b528c9d69607519c81a31cc5 252 SUPERFAMILY SSF51735 3 249 1.25E-78 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS10220 782f4705b528c9d69607519c81a31cc5 252 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 247 3.5E-66 T 29-03-2018 AM354_RS10220 782f4705b528c9d69607519c81a31cc5 252 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 189 8.1E-5 T 29-03-2018 AM354_RS07970 e06511651891ca651f0d3c997423a3ac 227 TIGRFAM TIGR02796 tolQ: protein TolQ 5 219 1.2E-94 T 29-03-2018 IPR014163 Tol-Pal system, TolQ GO:0015031|GO:0016021 AM354_RS07970 e06511651891ca651f0d3c997423a3ac 227 Pfam PF01618 MotA/TolQ/ExbB proton channel family 79 207 1.9E-42 T 29-03-2018 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 AM354_RS25970 bedda53224275eb5c2622542f5905f4a 319 Gene3D G3DSA:3.40.35.10 160 316 6.1E-61 T 29-03-2018 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 AM354_RS25970 bedda53224275eb5c2622542f5905f4a 319 SUPERFAMILY SSF52728 159 318 4.71E-56 T 29-03-2018 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 AM354_RS25970 bedda53224275eb5c2622542f5905f4a 319 Pfam PF03610 PTS system fructose IIA component 5 116 1.4E-33 T 29-03-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 AM354_RS25970 bedda53224275eb5c2622542f5905f4a 319 TIGRFAM TIGR00854 pts-sorbose: PTS system, mannose/fructose/sorbose family, IIB component 161 307 1.6E-56 T 29-03-2018 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup GO:0005737|GO:0008982|GO:0009401 AM354_RS25970 bedda53224275eb5c2622542f5905f4a 319 Pfam PF03830 PTS system sorbose subfamily IIB component 161 307 1.9E-56 T 29-03-2018 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 AM354_RS25970 bedda53224275eb5c2622542f5905f4a 319 SUPERFAMILY SSF53062 3 132 1.31E-36 T 29-03-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 AM354_RS25970 bedda53224275eb5c2622542f5905f4a 319 TIGRFAM TIGR00824 EIIA-man: PTS system, mannose/fructose/sorbose family, IIA component 3 117 1.2E-45 T 29-03-2018 IPR013789 Phosphotransferase system, mannose family IIA component GO:0005737|GO:0008643|GO:0016773 AM354_RS25970 bedda53224275eb5c2622542f5905f4a 319 Gene3D G3DSA:3.40.50.510 1 141 9.1E-37 T 29-03-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 AM354_RS22065 11027d2e5ccb00871cf467e9bb416b3d 293 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 1 289 65.663 T 29-03-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AM354_RS22065 11027d2e5ccb00871cf467e9bb416b3d 293 SMART SM01130 1 291 8.4E-142 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM354_RS22065 11027d2e5ccb00871cf467e9bb416b3d 293 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 4 289 1.2E-119 T 29-03-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AM354_RS22065 11027d2e5ccb00871cf467e9bb416b3d 293 Pfam PF00701 Dihydrodipicolinate synthetase family 2 289 5.2E-114 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM354_RS22065 11027d2e5ccb00871cf467e9bb416b3d 293 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 38 55 - T 29-03-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AM354_RS22065 11027d2e5ccb00871cf467e9bb416b3d 293 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 133 163 - T 29-03-2018 IPR020625 Schiff base-forming aldolase, active site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 AM354_RS22065 11027d2e5ccb00871cf467e9bb416b3d 293 SUPERFAMILY SSF51569 1 293 8.06E-98 T 29-03-2018 AM354_RS22065 11027d2e5ccb00871cf467e9bb416b3d 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 103 119 2.3E-34 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM354_RS22065 11027d2e5ccb00871cf467e9bb416b3d 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 71 89 2.3E-34 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM354_RS22065 11027d2e5ccb00871cf467e9bb416b3d 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 35 56 2.3E-34 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM354_RS22065 11027d2e5ccb00871cf467e9bb416b3d 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 128 145 2.3E-34 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM354_RS22065 11027d2e5ccb00871cf467e9bb416b3d 293 PIRSF PIRSF001365 1 293 2.1E-92 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM354_RS22065 11027d2e5ccb00871cf467e9bb416b3d 293 Gene3D G3DSA:3.20.20.70 1 293 1.8E-90 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS19770 3828111f38e9c960e7867e2841f73597 707 Gene3D G3DSA:3.90.70.10 9 137 1.1E-23 T 29-03-2018 AM354_RS19770 3828111f38e9c960e7867e2841f73597 707 Gene3D G3DSA:1.20.1560.10 161 439 2.0E-16 T 29-03-2018 AM354_RS19770 3828111f38e9c960e7867e2841f73597 707 ProSitePatterns PS00211 ABC transporters family signature. 613 627 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS19770 3828111f38e9c960e7867e2841f73597 707 Pfam PF03412 Peptidase C39 family 9 132 1.3E-19 T 29-03-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 AM354_RS19770 3828111f38e9c960e7867e2841f73597 707 SMART SM00382 502 689 5.3E-17 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS19770 3828111f38e9c960e7867e2841f73597 707 Gene3D G3DSA:3.40.50.300 449 704 3.8E-53 T 29-03-2018 AM354_RS19770 3828111f38e9c960e7867e2841f73597 707 Pfam PF00005 ABC transporter 493 641 8.3E-27 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS19770 3828111f38e9c960e7867e2841f73597 707 SUPERFAMILY SSF52540 471 701 4.02E-52 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS19770 3828111f38e9c960e7867e2841f73597 707 SUPERFAMILY SSF90123 166 456 2.22E-29 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM354_RS19770 3828111f38e9c960e7867e2841f73597 707 Pfam PF00664 ABC transporter transmembrane region 171 429 1.4E-11 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM354_RS05120 244328223fae640694a0e00a6980a292 182 Pfam PF01066 CDP-alcohol phosphatidyltransferase 4 71 2.6E-17 T 29-03-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AM354_RS05120 244328223fae640694a0e00a6980a292 182 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 49 71 - T 29-03-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AM354_RS05120 244328223fae640694a0e00a6980a292 182 PIRSF PIRSF000847 1 180 8.3E-45 T 29-03-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 AM354_RS05120 244328223fae640694a0e00a6980a292 182 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 4 180 1.6E-61 T 29-03-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 AM354_RS05120 244328223fae640694a0e00a6980a292 182 Hamap MF_01437 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [pgsA]. 1 182 33.015 T 29-03-2018 IPR023762 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, bacterial GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 AM354_RS20445 965978afe02dca803df97dd4e7c2ae81 399 SUPERFAMILY SSF103473 9 389 1.57E-53 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS20445 965978afe02dca803df97dd4e7c2ae81 399 Pfam PF07690 Major Facilitator Superfamily 18 322 1.2E-30 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS20445 965978afe02dca803df97dd4e7c2ae81 399 Gene3D G3DSA:1.20.1250.20 200 394 2.1E-16 T 29-03-2018 AM354_RS20445 965978afe02dca803df97dd4e7c2ae81 399 Gene3D G3DSA:1.20.1250.20 11 197 5.8E-26 T 29-03-2018 AM354_RS02220 92d08cf25c909feea7e001bdadb8576d 461 PIRSF PIRSF002744 1 459 2.6E-95 T 29-03-2018 IPR026030 Purine-cytosine permease Fcy2/21/22 GO:0005215|GO:0016021|GO:0055085 AM354_RS02220 92d08cf25c909feea7e001bdadb8576d 461 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 19 438 1.7E-39 T 29-03-2018 IPR001248 Purine-cytosine permease GO:0005215|GO:0016020|GO:0055085 AM354_RS25210 1c9e22afcf4a49e4bca765904de4a8de 119 ProDom PD015582 ACTIVATOR TRANSCRIPTIONAL TRANSCRIPTION FLAGELLUM FLHD FLAGELLAR DNA-BINDING REGULATION REGULATOR PROBABLE 12 97 8.0E-45 T 29-03-2018 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 AM354_RS25210 1c9e22afcf4a49e4bca765904de4a8de 119 SUPERFAMILY SSF63592 4 101 1.57E-38 T 29-03-2018 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 AM354_RS25210 1c9e22afcf4a49e4bca765904de4a8de 119 Pfam PF05247 Flagellar transcriptional activator (FlhD) 4 103 5.3E-40 T 29-03-2018 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 AM354_RS25210 1c9e22afcf4a49e4bca765904de4a8de 119 Hamap MF_00725 Flagellar transcriptional regulator FlhD [flhD]. 4 107 28.815 T 29-03-2018 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 AM354_RS25210 1c9e22afcf4a49e4bca765904de4a8de 119 Gene3D G3DSA:1.10.4000.10 6 105 1.7E-45 T 29-03-2018 AM354_RS06735 a70bfda2a9da923faf1c38cc524463af 201 Gene3D G3DSA:1.20.950.20 1 201 2.3E-36 T 29-03-2018 AM354_RS06735 a70bfda2a9da923faf1c38cc524463af 201 SUPERFAMILY SSF81342 6 199 5.18E-37 T 29-03-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 AM354_RS06735 a70bfda2a9da923faf1c38cc524463af 201 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 163 185 1.8E-5 T 29-03-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 AM354_RS06735 a70bfda2a9da923faf1c38cc524463af 201 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 12 35 1.8E-5 T 29-03-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 AM354_RS06735 a70bfda2a9da923faf1c38cc524463af 201 Pfam PF01292 Prokaryotic cytochrome b561 10 197 6.2E-22 T 29-03-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 AM354_RS09580 82b927c87b1d5868132e1f9408b4f4b4 214 PIRSF PIRSF006324 5 214 1.2E-52 T 29-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AM354_RS09580 82b927c87b1d5868132e1f9408b4f4b4 214 Pfam PF01810 LysE type translocator 19 211 1.0E-47 T 29-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AM354_RS01985 81faac0871f4fdf6efbd75e1ad3a923a 206 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 14 119 5.0E-31 T 29-03-2018 IPR013559 YheO-like AM354_RS01985 81faac0871f4fdf6efbd75e1ad3a923a 206 Pfam PF08348 YheO-like PAS domain 8 113 4.7E-22 T 29-03-2018 IPR013559 YheO-like AM354_RS01985 81faac0871f4fdf6efbd75e1ad3a923a 206 Gene3D G3DSA:1.10.10.60 158 206 7.2E-5 T 29-03-2018 AM354_RS01985 81faac0871f4fdf6efbd75e1ad3a923a 206 Pfam PF13309 HTH domain 140 201 3.9E-17 T 29-03-2018 AM354_RS20030 8f1c8525a79e16307e2a30fb33971a47 1183 TIGRFAM TIGR00609 recB: exodeoxyribonuclease V, beta subunit 9 1172 0.0 T 29-03-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 AM354_RS20030 8f1c8525a79e16307e2a30fb33971a47 1183 Gene3D G3DSA:3.40.50.300 340 411 5.6E-4 T 29-03-2018 AM354_RS20030 8f1c8525a79e16307e2a30fb33971a47 1183 SUPERFAMILY SSF52540 119 203 1.03E-108 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS20030 8f1c8525a79e16307e2a30fb33971a47 1183 SUPERFAMILY SSF52540 325 819 1.03E-108 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS20030 8f1c8525a79e16307e2a30fb33971a47 1183 SUPERFAMILY SSF52540 17 81 1.03E-108 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS20030 8f1c8525a79e16307e2a30fb33971a47 1183 Gene3D G3DSA:3.40.50.300 607 887 2.8E-27 T 29-03-2018 AM354_RS20030 8f1c8525a79e16307e2a30fb33971a47 1183 Gene3D G3DSA:3.40.50.300 444 590 1.3E-22 T 29-03-2018 AM354_RS20030 8f1c8525a79e16307e2a30fb33971a47 1183 Hamap MF_01485 RecBCD enzyme subunit RecB [recB]. 7 1173 23.008 T 29-03-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 AM354_RS20030 8f1c8525a79e16307e2a30fb33971a47 1183 Pfam PF13361 UvrD-like helicase C-terminal domain 669 808 1.6E-12 T 29-03-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AM354_RS20030 8f1c8525a79e16307e2a30fb33971a47 1183 Pfam PF13361 UvrD-like helicase C-terminal domain 441 634 1.1E-6 T 29-03-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AM354_RS20030 8f1c8525a79e16307e2a30fb33971a47 1183 Gene3D G3DSA:3.90.320.10 889 1180 8.4E-86 T 29-03-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal GO:0003677|GO:0004518 AM354_RS20030 8f1c8525a79e16307e2a30fb33971a47 1183 SUPERFAMILY SSF52980 901 1174 1.77E-95 T 29-03-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AM354_RS20030 8f1c8525a79e16307e2a30fb33971a47 1183 Pfam PF00580 UvrD/REP helicase N-terminal domain 10 436 2.8E-60 T 29-03-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 AM354_RS20030 8f1c8525a79e16307e2a30fb33971a47 1183 Gene3D G3DSA:1.10.3170.10 156 339 6.8E-58 T 29-03-2018 AM354_RS12205 441d94bb4ee05729e787cf71e124dac3 650 SUPERFAMILY SSF56300 20 356 1.73E-84 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like AM354_RS12205 441d94bb4ee05729e787cf71e124dac3 650 Pfam PF02872 5'-nucleotidase, C-terminal domain 358 552 1.5E-21 T 29-03-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM354_RS12205 441d94bb4ee05729e787cf71e124dac3 650 ProSitePatterns PS00786 5'-nucleotidase signature 2. 111 122 - T 29-03-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM354_RS12205 441d94bb4ee05729e787cf71e124dac3 650 ProSitePatterns PS00785 5'-nucleotidase signature 1. 26 38 - T 29-03-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM354_RS12205 441d94bb4ee05729e787cf71e124dac3 650 PRINTS PR01607 Apyrase family signature 24 42 1.6E-33 T 29-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM354_RS12205 441d94bb4ee05729e787cf71e124dac3 650 PRINTS PR01607 Apyrase family signature 245 268 1.6E-33 T 29-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM354_RS12205 441d94bb4ee05729e787cf71e124dac3 650 PRINTS PR01607 Apyrase family signature 285 305 1.6E-33 T 29-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM354_RS12205 441d94bb4ee05729e787cf71e124dac3 650 PRINTS PR01607 Apyrase family signature 217 234 1.6E-33 T 29-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM354_RS12205 441d94bb4ee05729e787cf71e124dac3 650 PRINTS PR01607 Apyrase family signature 532 551 1.6E-33 T 29-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM354_RS12205 441d94bb4ee05729e787cf71e124dac3 650 PRINTS PR01607 Apyrase family signature 430 453 1.6E-33 T 29-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM354_RS12205 441d94bb4ee05729e787cf71e124dac3 650 Gene3D G3DSA:3.90.780.10 379 606 9.1E-50 T 29-03-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM354_RS12205 441d94bb4ee05729e787cf71e124dac3 650 Gene3D G3DSA:3.60.21.10 15 378 1.7E-80 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like AM354_RS12205 441d94bb4ee05729e787cf71e124dac3 650 Pfam PF00149 Calcineurin-like phosphoesterase 26 261 4.9E-9 T 29-03-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AM354_RS12205 441d94bb4ee05729e787cf71e124dac3 650 SUPERFAMILY SSF55816 357 598 4.84E-40 T 29-03-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM354_RS12205 441d94bb4ee05729e787cf71e124dac3 650 TIGRFAM TIGR01390 CycNucDiestase: 2',3'-cyclic-nucleotide 2'-phosphodiesterase 24 648 0.0 T 29-03-2018 IPR006294 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase GO:0008663|GO:0009117 KEGG: 00230+3.1.4.16+3.1.3.6|KEGG: 00240+3.1.4.16+3.1.3.6 AM354_RS05850 b1a81a8a9cbe9d40fa81b55e4ad26d92 115 Pfam PF06961 Protein of unknown function (DUF1294) 33 87 2.1E-24 T 29-03-2018 IPR010718 Protein of unknown function DUF1294 AM354_RS05850 b1a81a8a9cbe9d40fa81b55e4ad26d92 115 PIRSF PIRSF002599 15 114 2.5E-18 T 29-03-2018 IPR012156 Cold shock, CspA GO:0003676 AM354_RS11650 d4db81d816df5afbbc045f5a36408265 443 Pfam PF07690 Major Facilitator Superfamily 37 403 1.7E-20 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS11650 d4db81d816df5afbbc045f5a36408265 443 TIGRFAM TIGR00885 fucP: L-fucose:H+ symporter permease 34 436 1.9E-107 T 29-03-2018 IPR005275 L-fucose permease FucP GO:0015150|GO:0015756 AM354_RS11650 d4db81d816df5afbbc045f5a36408265 443 Gene3D G3DSA:1.20.1250.20 250 442 1.2E-17 T 29-03-2018 AM354_RS11650 d4db81d816df5afbbc045f5a36408265 443 SUPERFAMILY SSF103473 22 440 1.1E-38 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS11650 d4db81d816df5afbbc045f5a36408265 443 Gene3D G3DSA:1.20.1250.20 23 249 2.6E-21 T 29-03-2018 AM354_RS13665 e9210d1c49de4b83ccd69f601d0287ee 300 Pfam PF09163 Formate dehydrogenase N, transmembrane 246 289 8.1E-23 T 29-03-2018 IPR015246 Formate dehydrogenase, transmembrane AM354_RS13665 e9210d1c49de4b83ccd69f601d0287ee 300 PIRSF PIRSF036298 1 300 3.0E-165 T 29-03-2018 IPR014603 Formate dehydrogenase iron-sulphur subunit GO:0015944|GO:0045333|GO:0051539 AM354_RS13665 e9210d1c49de4b83ccd69f601d0287ee 300 Pfam PF13247 4Fe-4S dicluster domain 92 188 3.1E-25 T 29-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM354_RS13665 e9210d1c49de4b83ccd69f601d0287ee 300 Gene3D G3DSA:3.30.70.20 153 255 9.7E-23 T 29-03-2018 AM354_RS13665 e9210d1c49de4b83ccd69f601d0287ee 300 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 133 144 - T 29-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM354_RS13665 e9210d1c49de4b83ccd69f601d0287ee 300 Gene3D G3DSA:3.30.70.20 113 152 1.9E-16 T 29-03-2018 AM354_RS13665 e9210d1c49de4b83ccd69f601d0287ee 300 Gene3D G3DSA:3.30.70.20 11 42 0.004 T 29-03-2018 AM354_RS13665 e9210d1c49de4b83ccd69f601d0287ee 300 TIGRFAM TIGR01582 FDH-beta: formate dehydrogenase, beta subunit 7 290 3.4E-144 T 29-03-2018 IPR006470 Formate dehydrogenase iron-sulphur subunit, Proteobacteria GO:0015944|GO:0016021|GO:0045333|GO:0051539 AM354_RS13665 e9210d1c49de4b83ccd69f601d0287ee 300 Gene3D G3DSA:3.30.70.20 43 112 7.4E-22 T 29-03-2018 AM354_RS13665 e9210d1c49de4b83ccd69f601d0287ee 300 SUPERFAMILY SSF54862 28 273 4.19E-73 T 29-03-2018 AM354_RS13665 e9210d1c49de4b83ccd69f601d0287ee 300 Gene3D G3DSA:1.20.5.480 256 291 2.1E-23 T 29-03-2018 AM354_RS11670 b82ac18f9da371b497a30b2855a7a203 252 SMART SM01134 73 234 5.1E-63 T 29-03-2018 AM354_RS11670 b82ac18f9da371b497a30b2855a7a203 252 SUPERFAMILY SSF46785 4 58 8.7E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS11670 b82ac18f9da371b497a30b2855a7a203 252 SUPERFAMILY SSF100950 75 234 3.14E-32 T 29-03-2018 AM354_RS11670 b82ac18f9da371b497a30b2855a7a203 252 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 6.6E-7 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS11670 b82ac18f9da371b497a30b2855a7a203 252 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 6.6E-7 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS11670 b82ac18f9da371b497a30b2855a7a203 252 SMART SM00420 6 58 1.5E-17 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS11670 b82ac18f9da371b497a30b2855a7a203 252 Pfam PF00455 DeoR C terminal sensor domain 75 233 1.9E-48 T 29-03-2018 IPR014036 DeoR C-terminal sensor domain AM354_RS11670 b82ac18f9da371b497a30b2855a7a203 252 Gene3D G3DSA:3.40.50.1360 73 237 3.8E-38 T 29-03-2018 AM354_RS11670 b82ac18f9da371b497a30b2855a7a203 252 Pfam PF08220 DeoR-like helix-turn-helix domain 6 59 5.2E-17 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS11670 b82ac18f9da371b497a30b2855a7a203 252 Gene3D G3DSA:1.10.10.10 1 67 1.1E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS19490 1ab1decf5e5fecf97e4f137eee955433 219 Pfam PF00072 Response regulator receiver domain 3 112 3.9E-19 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS19490 1ab1decf5e5fecf97e4f137eee955433 219 Gene3D G3DSA:3.40.50.2300 1 119 7.5E-28 T 29-03-2018 AM354_RS19490 1ab1decf5e5fecf97e4f137eee955433 219 SMART SM00862 145 216 4.4E-21 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS19490 1ab1decf5e5fecf97e4f137eee955433 219 Gene3D G3DSA:1.10.10.10 120 219 9.2E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS19490 1ab1decf5e5fecf97e4f137eee955433 219 SUPERFAMILY SSF52172 2 170 9.36E-32 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS19490 1ab1decf5e5fecf97e4f137eee955433 219 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 216 5.5E-18 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS19490 1ab1decf5e5fecf97e4f137eee955433 219 SMART SM00448 1 112 2.4E-27 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS18085 d338e6d9b9cdb69f0ced8d227fc4492a 378 SUPERFAMILY SSF53807 29 348 2.47E-45 T 29-03-2018 AM354_RS18085 d338e6d9b9cdb69f0ced8d227fc4492a 378 Gene3D G3DSA:3.40.50.1980 20 165 2.2E-18 T 29-03-2018 AM354_RS18085 d338e6d9b9cdb69f0ced8d227fc4492a 378 Pfam PF01497 Periplasmic binding protein 71 325 1.3E-20 T 29-03-2018 IPR002491 ABC transporter periplasmic binding domain GO:0005488 AM354_RS18085 d338e6d9b9cdb69f0ced8d227fc4492a 378 Gene3D G3DSA:3.40.50.1980 166 354 2.0E-39 T 29-03-2018 AM354_RS03705 60fc9572d096e217f7f6e42c8500b576 511 Pfam PF00144 Beta-lactamase 21 322 1.6E-35 T 29-03-2018 IPR001466 Beta-lactamase-related AM354_RS03705 60fc9572d096e217f7f6e42c8500b576 511 Gene3D G3DSA:3.40.710.10 6 345 1.2E-44 T 29-03-2018 AM354_RS03705 60fc9572d096e217f7f6e42c8500b576 511 SUPERFAMILY SSF56601 16 335 4.06E-50 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM354_RS05990 a7ffedad32e0e73bce6afb7a09392dbc 296 Gene3D G3DSA:1.10.10.10 3 84 1.2E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS05990 a7ffedad32e0e73bce6afb7a09392dbc 296 Gene3D G3DSA:3.40.190.10 87 167 1.0E-9 T 29-03-2018 AM354_RS05990 a7ffedad32e0e73bce6afb7a09392dbc 296 Gene3D G3DSA:3.40.190.10 168 249 4.8E-14 T 29-03-2018 AM354_RS05990 a7ffedad32e0e73bce6afb7a09392dbc 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 1.3E-16 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS05990 a7ffedad32e0e73bce6afb7a09392dbc 296 Pfam PF03466 LysR substrate binding domain 88 279 2.3E-21 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS05990 a7ffedad32e0e73bce6afb7a09392dbc 296 SUPERFAMILY SSF46785 2 81 4.24E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS05990 a7ffedad32e0e73bce6afb7a09392dbc 296 SUPERFAMILY SSF53850 90 283 1.09E-24 T 29-03-2018 AM354_RS14630 12633edfdff6f6fb1ddd2a6818ccf784 334 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 5 146 8.5E-34 T 29-03-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AM354_RS14630 12633edfdff6f6fb1ddd2a6818ccf784 334 SMART SM00859 3 146 1.4E-52 T 29-03-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AM354_RS14630 12633edfdff6f6fb1ddd2a6818ccf784 334 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 163 311 3.4E-17 T 29-03-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AM354_RS14630 12633edfdff6f6fb1ddd2a6818ccf784 334 Gene3D G3DSA:3.40.50.720 1 162 2.2E-47 T 29-03-2018 AM354_RS14630 12633edfdff6f6fb1ddd2a6818ccf784 334 Gene3D G3DSA:3.30.360.10 163 308 1.3E-48 T 29-03-2018 AM354_RS14630 12633edfdff6f6fb1ddd2a6818ccf784 334 SUPERFAMILY SSF55347 154 308 1.96E-49 T 29-03-2018 AM354_RS14630 12633edfdff6f6fb1ddd2a6818ccf784 334 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 3 333 2.0E-125 T 29-03-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AM354_RS14630 12633edfdff6f6fb1ddd2a6818ccf784 334 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 149 165 - T 29-03-2018 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AM354_RS14630 12633edfdff6f6fb1ddd2a6818ccf784 334 SUPERFAMILY SSF51735 2 180 2.58E-47 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS14630 12633edfdff6f6fb1ddd2a6818ccf784 334 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 2 334 38.387 T 29-03-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AM354_RS26020 4e9e08aebe7f71cac847f284981d0670 460 Pfam PF00270 DEAD/DEAH box helicase 28 193 2.3E-44 T 29-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AM354_RS26020 4e9e08aebe7f71cac847f284981d0670 460 SMART SM00487 23 220 8.3E-57 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AM354_RS26020 4e9e08aebe7f71cac847f284981d0670 460 Gene3D G3DSA:3.40.50.300 221 455 9.9E-43 T 29-03-2018 AM354_RS26020 4e9e08aebe7f71cac847f284981d0670 460 SUPERFAMILY SSF52540 74 358 1.16E-70 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS26020 4e9e08aebe7f71cac847f284981d0670 460 Gene3D G3DSA:3.40.50.300 9 220 1.0E-55 T 29-03-2018 AM354_RS26020 4e9e08aebe7f71cac847f284981d0670 460 SMART SM00490 256 337 4.3E-29 T 29-03-2018 IPR001650 Helicase, C-terminal AM354_RS26020 4e9e08aebe7f71cac847f284981d0670 460 Pfam PF00271 Helicase conserved C-terminal domain 236 337 2.4E-27 T 29-03-2018 IPR001650 Helicase, C-terminal AM354_RS26020 4e9e08aebe7f71cac847f284981d0670 460 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 152 160 - T 29-03-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site AM354_RS26020 4e9e08aebe7f71cac847f284981d0670 460 Hamap MF_00965 ATP-dependent RNA helicase DbpA [dbpA]. 6 460 69.161 T 29-03-2018 IPR028619 ATP-dependent RNA helicase DbpA GO:0000027|GO:0003724 AM354_RS26020 4e9e08aebe7f71cac847f284981d0670 460 Pfam PF03880 DbpA RNA binding domain 387 457 6.7E-23 T 29-03-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain AM354_RS23015 d8f54933dde7c1d343276d7271680dc0 304 Pfam PF08338 Domain of unknown function (DUF1731) 250 295 5.1E-21 T 29-03-2018 IPR013549 Domain of unknown function DUF1731 AM354_RS23015 d8f54933dde7c1d343276d7271680dc0 304 Gene3D G3DSA:3.40.50.720 1 303 3.2E-39 T 29-03-2018 AM354_RS23015 d8f54933dde7c1d343276d7271680dc0 304 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 215 9.8E-18 T 29-03-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AM354_RS23015 d8f54933dde7c1d343276d7271680dc0 304 SUPERFAMILY SSF51735 1 298 4.31E-44 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS23015 d8f54933dde7c1d343276d7271680dc0 304 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 3 293 8.6E-113 T 29-03-2018 IPR010099 Epimerase family protein SDR39U1 AM354_RS01855 1b97aa358e55e46c7b04b61466402fa5 184 Gene3D G3DSA:1.10.260.40 8 74 9.9E-18 T 29-03-2018 AM354_RS01855 1b97aa358e55e46c7b04b61466402fa5 184 SMART SM00530 13 68 8.5E-16 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM354_RS01855 1b97aa358e55e46c7b04b61466402fa5 184 Pfam PF01381 Helix-turn-helix 14 66 1.5E-16 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM354_RS01855 1b97aa358e55e46c7b04b61466402fa5 184 SUPERFAMILY SSF47413 10 71 1.37E-16 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS01855 1b97aa358e55e46c7b04b61466402fa5 184 Gene3D G3DSA:2.60.120.10 75 184 2.4E-13 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS01855 1b97aa358e55e46c7b04b61466402fa5 184 SUPERFAMILY SSF51182 61 181 9.15E-21 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS24345 17fee47fa82af6a94926847769e300a0 132 SUPERFAMILY SSF51182 8 114 1.24E-14 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS24345 17fee47fa82af6a94926847769e300a0 132 Pfam PF07883 Cupin domain 44 105 1.8E-10 T 29-03-2018 IPR013096 Cupin 2, conserved barrel AM354_RS24345 17fee47fa82af6a94926847769e300a0 132 Gene3D G3DSA:2.60.120.10 6 112 2.3E-13 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS07955 929b2ebce02637f9eecd2a61fba7a654 430 Gene3D G3DSA:2.130.10.150 248 429 1.1E-33 T 29-03-2018 AM354_RS07955 929b2ebce02637f9eecd2a61fba7a654 430 Gene3D G3DSA:2.130.10.150 164 247 2.3E-8 T 29-03-2018 AM354_RS07955 929b2ebce02637f9eecd2a61fba7a654 430 Pfam PF07676 WD40-like Beta Propeller Repeat 199 223 4.3E-5 T 29-03-2018 IPR011659 WD40-like Beta Propeller AM354_RS07955 929b2ebce02637f9eecd2a61fba7a654 430 Pfam PF07676 WD40-like Beta Propeller Repeat 237 272 1.7E-9 T 29-03-2018 IPR011659 WD40-like Beta Propeller AM354_RS07955 929b2ebce02637f9eecd2a61fba7a654 430 Pfam PF07676 WD40-like Beta Propeller Repeat 281 315 9.6E-13 T 29-03-2018 IPR011659 WD40-like Beta Propeller AM354_RS07955 929b2ebce02637f9eecd2a61fba7a654 430 Pfam PF07676 WD40-like Beta Propeller Repeat 369 398 0.0011 T 29-03-2018 IPR011659 WD40-like Beta Propeller AM354_RS07955 929b2ebce02637f9eecd2a61fba7a654 430 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 15 427 1.7E-163 T 29-03-2018 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 AM354_RS07955 929b2ebce02637f9eecd2a61fba7a654 430 Pfam PF04052 TolB amino-terminal domain 23 122 2.0E-32 T 29-03-2018 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 AM354_RS07955 929b2ebce02637f9eecd2a61fba7a654 430 Hamap MF_00671 Protein TolB [tolB]. 5 426 34.788 T 29-03-2018 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 AM354_RS07955 929b2ebce02637f9eecd2a61fba7a654 430 Gene3D G3DSA:3.40.50.10070 22 163 9.6E-38 T 29-03-2018 AM354_RS07955 929b2ebce02637f9eecd2a61fba7a654 430 SUPERFAMILY SSF69304 155 428 2.48E-55 T 29-03-2018 AM354_RS07955 929b2ebce02637f9eecd2a61fba7a654 430 SUPERFAMILY SSF52964 28 161 1.31E-40 T 29-03-2018 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 AM354_RS22315 d346c0e8c3de53316f031bb2e9757c67 441 SMART SM00387 330 440 2.4E-28 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS22315 d346c0e8c3de53316f031bb2e9757c67 441 Gene3D G3DSA:1.10.287.130 211 280 1.4E-12 T 29-03-2018 AM354_RS22315 d346c0e8c3de53316f031bb2e9757c67 441 PRINTS PR00344 Bacterial sensor protein C-terminal signature 367 381 7.7E-13 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS22315 d346c0e8c3de53316f031bb2e9757c67 441 PRINTS PR00344 Bacterial sensor protein C-terminal signature 424 437 7.7E-13 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS22315 d346c0e8c3de53316f031bb2e9757c67 441 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 395 7.7E-13 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS22315 d346c0e8c3de53316f031bb2e9757c67 441 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 418 7.7E-13 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS22315 d346c0e8c3de53316f031bb2e9757c67 441 Gene3D G3DSA:3.30.565.10 287 440 3.9E-36 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS22315 d346c0e8c3de53316f031bb2e9757c67 441 Pfam PF00672 HAMP domain 166 216 7.7E-10 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM354_RS22315 d346c0e8c3de53316f031bb2e9757c67 441 SUPERFAMILY SSF55874 274 438 3.8E-35 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS22315 d346c0e8c3de53316f031bb2e9757c67 441 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 334 437 3.8E-17 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS22315 d346c0e8c3de53316f031bb2e9757c67 441 SMART SM00304 165 220 2.4E-10 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM354_RS22315 d346c0e8c3de53316f031bb2e9757c67 441 Pfam PF00512 His Kinase A (phospho-acceptor) domain 222 283 2.8E-10 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS22315 d346c0e8c3de53316f031bb2e9757c67 441 SUPERFAMILY SSF47384 205 284 6.47E-14 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS22315 d346c0e8c3de53316f031bb2e9757c67 441 SUPERFAMILY SSF158472 166 216 3.79E-8 T 29-03-2018 AM354_RS22315 d346c0e8c3de53316f031bb2e9757c67 441 SMART SM00388 221 284 2.5E-11 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS09610 473370b068233debe29cbb65b56640f8 255 Gene3D G3DSA:3.40.50.360 1 244 8.0E-46 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS09610 473370b068233debe29cbb65b56640f8 255 SUPERFAMILY SSF52218 1 236 6.39E-61 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS09610 473370b068233debe29cbb65b56640f8 255 Pfam PF02525 Flavodoxin-like fold 1 205 3.0E-51 T 29-03-2018 IPR003680 Flavodoxin-like fold AM354_RS19800 4de255c9751c46b84e61f08687b13ecf 182 SUPERFAMILY SSF56349 5 181 1.29E-41 T 29-03-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AM354_RS19800 4de255c9751c46b84e61f08687b13ecf 182 Pfam PF00589 Phage integrase family 6 175 2.5E-40 T 29-03-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM354_RS19800 4de255c9751c46b84e61f08687b13ecf 182 Gene3D G3DSA:1.10.443.10 5 182 8.0E-36 T 29-03-2018 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM354_RS19170 cbbb1318fa3e06dd1acf47f815962c22 251 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 189 0.0017 T 29-03-2018 AM354_RS19170 cbbb1318fa3e06dd1acf47f815962c22 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 1.6E-9 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS19170 cbbb1318fa3e06dd1acf47f815962c22 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 1.6E-9 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS19170 cbbb1318fa3e06dd1acf47f815962c22 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 1.6E-9 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS19170 cbbb1318fa3e06dd1acf47f815962c22 251 Gene3D G3DSA:3.40.50.10090 4 45 9.1E-8 T 29-03-2018 AM354_RS19170 cbbb1318fa3e06dd1acf47f815962c22 251 SUPERFAMILY SSF51735 6 249 2.17E-68 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS19170 cbbb1318fa3e06dd1acf47f815962c22 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 3.2E-28 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS19170 cbbb1318fa3e06dd1acf47f815962c22 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 3.2E-28 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS19170 cbbb1318fa3e06dd1acf47f815962c22 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 3.2E-28 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS19170 cbbb1318fa3e06dd1acf47f815962c22 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 3.2E-28 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS19170 cbbb1318fa3e06dd1acf47f815962c22 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 3.2E-28 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS19170 cbbb1318fa3e06dd1acf47f815962c22 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 3.2E-28 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS19170 cbbb1318fa3e06dd1acf47f815962c22 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM354_RS19170 cbbb1318fa3e06dd1acf47f815962c22 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 248 1.2E-55 T 29-03-2018 AM354_RS19170 cbbb1318fa3e06dd1acf47f815962c22 251 Gene3D G3DSA:3.40.50.720 46 251 3.7E-57 T 29-03-2018 AM354_RS22765 653c007cd21cdbe80c56bfa27af26daf 98 TIGRFAM TIGR00743 TIGR00743: conserved hypothetical protein 5 98 1.3E-42 T 29-03-2018 IPR005272 Conserved hypothetical protein CHP00743 AM354_RS22765 653c007cd21cdbe80c56bfa27af26daf 98 Pfam PF04175 Protein of unknown function (DUF406) 7 98 6.4E-41 T 29-03-2018 IPR005272 Conserved hypothetical protein CHP00743 AM354_RS22765 653c007cd21cdbe80c56bfa27af26daf 98 Gene3D G3DSA:3.30.70.860 19 98 5.7E-34 T 29-03-2018 IPR035571 UPF0234/UPF0381 domain AM354_RS08775 8c97cc26c47d79efbb8e3b5d7d00cca9 320 TIGRFAM TIGR00109 hemH: ferrochelatase 1 319 3.6E-110 T 29-03-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 AM354_RS08775 8c97cc26c47d79efbb8e3b5d7d00cca9 320 SUPERFAMILY SSF53800 3 320 1.31E-100 T 29-03-2018 AM354_RS08775 8c97cc26c47d79efbb8e3b5d7d00cca9 320 Gene3D G3DSA:3.40.50.1400 1 172 2.1E-47 T 29-03-2018 AM354_RS08775 8c97cc26c47d79efbb8e3b5d7d00cca9 320 Pfam PF00762 Ferrochelatase 5 319 1.5E-108 T 29-03-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 AM354_RS08775 8c97cc26c47d79efbb8e3b5d7d00cca9 320 Gene3D G3DSA:3.40.50.1400 173 301 3.8E-42 T 29-03-2018 AM354_RS08775 8c97cc26c47d79efbb8e3b5d7d00cca9 320 Hamap MF_00323 Ferrochelatase [hemH]. 4 320 36.944 T 29-03-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 AM354_RS08775 8c97cc26c47d79efbb8e3b5d7d00cca9 320 ProSitePatterns PS00534 Ferrochelatase signature. 189 207 - T 29-03-2018 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 AM354_RS22415 4d504e6ac6099dec28f132545dbd49d8 720 SUPERFAMILY SSF56935 60 720 2.52E-123 T 29-03-2018 AM354_RS22415 4d504e6ac6099dec28f132545dbd49d8 720 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 77 718 4.4E-118 T 29-03-2018 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 AM354_RS22415 4d504e6ac6099dec28f132545dbd49d8 720 Gene3D G3DSA:2.170.130.10 32 178 1.7E-23 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS22415 4d504e6ac6099dec28f132545dbd49d8 720 Gene3D G3DSA:2.40.170.20 184 720 2.3E-71 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS22415 4d504e6ac6099dec28f132545dbd49d8 720 Pfam PF00593 TonB dependent receptor 255 719 4.4E-58 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS22415 4d504e6ac6099dec28f132545dbd49d8 720 Pfam PF07715 TonB-dependent Receptor Plug Domain 76 170 3.4E-20 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS20530 a851761815df4a429d05fa747c28e092 477 Gene3D G3DSA:3.40.640.10 132 378 2.8E-42 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS20530 a851761815df4a429d05fa747c28e092 477 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 82 2.1E-17 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS20530 a851761815df4a429d05fa747c28e092 477 Pfam PF00155 Aminotransferase class I and II 150 414 3.3E-20 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM354_RS20530 a851761815df4a429d05fa747c28e092 477 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 56 3.8E-6 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS20530 a851761815df4a429d05fa747c28e092 477 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 56 72 3.8E-6 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS20530 a851761815df4a429d05fa747c28e092 477 SMART SM00345 23 82 8.2E-16 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS20530 a851761815df4a429d05fa747c28e092 477 Gene3D G3DSA:3.90.1150.10 379 477 1.7E-17 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS20530 a851761815df4a429d05fa747c28e092 477 SUPERFAMILY SSF53383 78 475 5.52E-88 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS20530 a851761815df4a429d05fa747c28e092 477 Gene3D G3DSA:1.10.10.10 6 84 1.3E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS20530 a851761815df4a429d05fa747c28e092 477 SUPERFAMILY SSF46785 17 85 9.75E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS05830 9c1060f9488c0f1fdb656d2b0e064b4e 338 Gene3D G3DSA:3.90.1150.10 249 337 4.0E-16 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS05830 9c1060f9488c0f1fdb656d2b0e064b4e 338 Gene3D G3DSA:3.40.640.10 18 248 1.6E-47 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS05830 9c1060f9488c0f1fdb656d2b0e064b4e 338 Pfam PF01212 Beta-eliminating lyase 4 284 5.3E-95 T 29-03-2018 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 AM354_RS05830 9c1060f9488c0f1fdb656d2b0e064b4e 338 SUPERFAMILY SSF53383 3 336 2.37E-113 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS05830 9c1060f9488c0f1fdb656d2b0e064b4e 338 PIRSF PIRSF017617 1 338 7.1E-130 T 29-03-2018 IPR023603 Threonine aldolase AM354_RS23490 736b51b35db9ee6511cc2d32d3006c19 1023 Gene3D G3DSA:3.40.50.740 456 790 2.3E-29 T 29-03-2018 AM354_RS23490 736b51b35db9ee6511cc2d32d3006c19 1023 Gene3D G3DSA:3.40.50.740 158 396 7.8E-22 T 29-03-2018 AM354_RS23490 736b51b35db9ee6511cc2d32d3006c19 1023 SUPERFAMILY SSF53706 137 866 1.7E-108 T 29-03-2018 AM354_RS23490 736b51b35db9ee6511cc2d32d3006c19 1023 SUPERFAMILY SSF53706 75 110 1.7E-108 T 29-03-2018 AM354_RS23490 736b51b35db9ee6511cc2d32d3006c19 1023 SMART SM00926 71 153 6.3E-15 T 29-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23490 736b51b35db9ee6511cc2d32d3006c19 1023 Gene3D G3DSA:2.40.40.20 848 1023 1.3E-22 T 29-03-2018 AM354_RS23490 736b51b35db9ee6511cc2d32d3006c19 1023 Pfam PF00384 Molybdopterin oxidoreductase 243 683 6.7E-12 T 29-03-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23490 736b51b35db9ee6511cc2d32d3006c19 1023 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 76 152 5.2E-5 T 29-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23490 736b51b35db9ee6511cc2d32d3006c19 1023 SUPERFAMILY SSF50692 873 998 7.01E-24 T 29-03-2018 IPR009010 Aspartate decarboxylase-like domain AM354_RS23490 736b51b35db9ee6511cc2d32d3006c19 1023 Pfam PF01568 Molydopterin dinucleotide binding domain 894 988 1.7E-11 T 29-03-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 AM354_RS23490 736b51b35db9ee6511cc2d32d3006c19 1023 Gene3D G3DSA:2.20.25.90 65 157 5.1E-13 T 29-03-2018 AM354_RS08815 4ac6872d66e74b2622215c7e8fa2b0b8 652 Gene3D G3DSA:1.10.8.60 167 242 1.1E-20 T 29-03-2018 AM354_RS08815 4ac6872d66e74b2622215c7e8fa2b0b8 652 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 41 59 2.8E-5 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 AM354_RS08815 4ac6872d66e74b2622215c7e8fa2b0b8 652 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 124 142 2.8E-5 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 AM354_RS08815 4ac6872d66e74b2622215c7e8fa2b0b8 652 Pfam PF12168 DNA polymerase III subunits tau domain IV DnaB-binding 426 506 3.0E-21 T 29-03-2018 IPR022001 DNA polymerase III subunit tau, DnaB-binding domain IV KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS08815 4ac6872d66e74b2622215c7e8fa2b0b8 652 Pfam PF13177 DNA polymerase III, delta subunit 20 178 1.7E-42 T 29-03-2018 AM354_RS08815 4ac6872d66e74b2622215c7e8fa2b0b8 652 SUPERFAMILY SSF48019 243 366 4.59E-36 T 29-03-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 AM354_RS08815 4ac6872d66e74b2622215c7e8fa2b0b8 652 SMART SM00382 37 178 9.9E-9 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS08815 4ac6872d66e74b2622215c7e8fa2b0b8 652 Gene3D G3DSA:3.40.50.300 1 166 2.5E-40 T 29-03-2018 AM354_RS08815 4ac6872d66e74b2622215c7e8fa2b0b8 652 Gene3D G3DSA:1.20.272.10 243 363 7.1E-14 T 29-03-2018 AM354_RS08815 4ac6872d66e74b2622215c7e8fa2b0b8 652 SUPERFAMILY SSF52540 35 222 3.07E-57 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS08815 4ac6872d66e74b2622215c7e8fa2b0b8 652 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 232 361 6.7E-33 T 29-03-2018 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 AM354_RS08815 4ac6872d66e74b2622215c7e8fa2b0b8 652 Pfam PF12170 DNA polymerase III tau subunit V interacting with alpha 508 649 1.8E-61 T 29-03-2018 IPR021029 DNA polymerase III, tau subunit, domain V GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS08815 4ac6872d66e74b2622215c7e8fa2b0b8 652 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 3 356 4.7E-136 T 29-03-2018 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 AM354_RS11715 4370534c6613fa1e169ea867594f4aa9 141 PIRSF PIRSF018193 1 141 6.2E-67 T 29-03-2018 IPR016716 Regulator of ribonuclease activity B AM354_RS11715 4370534c6613fa1e169ea867594f4aa9 141 Hamap MF_01888 Regulator of ribonuclease activity B [rraB]. 4 117 31.256 T 29-03-2018 IPR016716 Regulator of ribonuclease activity B AM354_RS11715 4370534c6613fa1e169ea867594f4aa9 141 Pfam PF06877 Regulator of ribonuclease activity B 12 113 3.6E-34 T 29-03-2018 IPR009671 Regulator of ribonuclease activity B domain AM354_RS11715 4370534c6613fa1e169ea867594f4aa9 141 Gene3D G3DSA:3.30.70.970 3 116 4.7E-41 T 29-03-2018 IPR009671 Regulator of ribonuclease activity B domain AM354_RS11715 4370534c6613fa1e169ea867594f4aa9 141 SUPERFAMILY SSF89946 3 122 2.88E-41 T 29-03-2018 IPR009671 Regulator of ribonuclease activity B domain AM354_RS24760 7f640237e8d07d04724bc3fc35e53738 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 6.9E-21 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS24760 7f640237e8d07d04724bc3fc35e53738 310 Gene3D G3DSA:3.40.190.10 174 260 2.8E-25 T 29-03-2018 AM354_RS24760 7f640237e8d07d04724bc3fc35e53738 310 Gene3D G3DSA:3.40.190.10 88 173 3.0E-15 T 29-03-2018 AM354_RS24760 7f640237e8d07d04724bc3fc35e53738 310 Gene3D G3DSA:1.10.10.10 3 87 3.6E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS24760 7f640237e8d07d04724bc3fc35e53738 310 SUPERFAMILY SSF53850 89 293 4.52E-43 T 29-03-2018 AM354_RS24760 7f640237e8d07d04724bc3fc35e53738 310 SUPERFAMILY SSF46785 3 109 1.63E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS24760 7f640237e8d07d04724bc3fc35e53738 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 4.2E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS24760 7f640237e8d07d04724bc3fc35e53738 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 4.2E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS24760 7f640237e8d07d04724bc3fc35e53738 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 4.2E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS24760 7f640237e8d07d04724bc3fc35e53738 310 Pfam PF03466 LysR substrate binding domain 88 292 2.9E-40 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS24165 c631ed2fdb471b380dd8413055a58568 228 Gene3D G3DSA:3.40.50.2300 2 150 1.0E-26 T 29-03-2018 AM354_RS24165 c631ed2fdb471b380dd8413055a58568 228 Pfam PF00072 Response regulator receiver domain 6 117 3.2E-20 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS24165 c631ed2fdb471b380dd8413055a58568 228 PIRSF PIRSF006171 2 227 3.9E-74 T 29-03-2018 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0001071|GO:0003677|GO:0005737|GO:0009605 AM354_RS24165 c631ed2fdb471b380dd8413055a58568 228 Gene3D G3DSA:1.10.10.10 158 223 7.9E-4 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS24165 c631ed2fdb471b380dd8413055a58568 228 SMART SM00448 4 117 4.6E-23 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS24165 c631ed2fdb471b380dd8413055a58568 228 SUPERFAMILY SSF52172 3 190 1.37E-30 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS24165 c631ed2fdb471b380dd8413055a58568 228 Pfam PF12431 Transcriptional regulator 133 161 3.3E-9 T 29-03-2018 IPR028141 Transcriptional regulator AM354_RS05710 fdb0553ba5f81e0a5835b8458c5599f3 246 Pfam PF13353 4Fe-4S single cluster domain 16 136 4.8E-18 T 29-03-2018 AM354_RS05710 fdb0553ba5f81e0a5835b8458c5599f3 246 PIRSF PIRSF000371 1 47 5.8E-11 T 29-03-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 AM354_RS05710 fdb0553ba5f81e0a5835b8458c5599f3 246 PIRSF PIRSF000371 44 246 1.5E-43 T 29-03-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 AM354_RS05710 fdb0553ba5f81e0a5835b8458c5599f3 246 ProSitePatterns PS01087 Radical activating enzymes signature. 18 39 - T 29-03-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 AM354_RS05710 fdb0553ba5f81e0a5835b8458c5599f3 246 SUPERFAMILY SSF102114 23 214 7.65E-22 T 29-03-2018 AM354_RS05710 fdb0553ba5f81e0a5835b8458c5599f3 246 Pfam PF04055 Radical SAM superfamily 24 178 1.7E-29 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AM354_RS05710 fdb0553ba5f81e0a5835b8458c5599f3 246 TIGRFAM TIGR02493 PFLA: pyruvate formate-lyase 1-activating enzyme 6 239 6.8E-104 T 29-03-2018 IPR012838 Pyruvate formate-lyase activating enzyme GO:0043365|GO:0055114 AM354_RS05710 fdb0553ba5f81e0a5835b8458c5599f3 246 Gene3D G3DSA:3.80.30.10 68 245 2.6E-35 T 29-03-2018 AM354_RS09720 b0f40178f441a1889f3e367034f6693a 349 SUPERFAMILY SSF53474 45 185 1.73E-43 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS09720 b0f40178f441a1889f3e367034f6693a 349 SUPERFAMILY SSF53474 237 348 1.73E-43 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS09720 b0f40178f441a1889f3e367034f6693a 349 Gene3D G3DSA:3.40.50.1820 37 349 2.6E-36 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS09720 b0f40178f441a1889f3e367034f6693a 349 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 57 255 6.4E-9 T 29-03-2018 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 AM354_RS08625 c64a106b6b4b2f8750132a368b28db15 415 SUPERFAMILY SSF53187 337 407 4.0E-79 T 29-03-2018 AM354_RS08625 c64a106b6b4b2f8750132a368b28db15 415 SUPERFAMILY SSF53187 6 220 4.0E-79 T 29-03-2018 AM354_RS08625 c64a106b6b4b2f8750132a368b28db15 415 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 8 406 1.0E-161 T 29-03-2018 IPR010158 Amidase, carbamoylase-type GO:0008152|GO:0016813 AM354_RS08625 c64a106b6b4b2f8750132a368b28db15 415 Pfam PF01546 Peptidase family M20/M25/M40 78 404 8.2E-32 T 29-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AM354_RS08625 c64a106b6b4b2f8750132a368b28db15 415 PIRSF PIRSF001235 2 411 3.2E-128 T 29-03-2018 IPR010158 Amidase, carbamoylase-type GO:0008152|GO:0016813 AM354_RS08625 c64a106b6b4b2f8750132a368b28db15 415 TIGRFAM TIGR03176 AllC: allantoate amidohydrolase 2 409 1.1E-208 T 29-03-2018 IPR017591 Allantoate amidohydrolase GO:0000256|GO:0009442|GO:0030145|GO:0042803|GO:0047652 AM354_RS08625 c64a106b6b4b2f8750132a368b28db15 415 Gene3D G3DSA:3.40.630.10 3 244 3.8E-32 T 29-03-2018 AM354_RS08625 c64a106b6b4b2f8750132a368b28db15 415 Gene3D G3DSA:3.40.630.10 247 410 3.9E-23 T 29-03-2018 AM354_RS08625 c64a106b6b4b2f8750132a368b28db15 415 SUPERFAMILY SSF55031 211 327 5.06E-25 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain AM354_RS08570 6d4ad1a1a7e917689ffd6435a41983c5 810 Pfam PF02687 FtsX-like permease family 714 800 3.2E-6 T 29-03-2018 IPR003838 ABC transporter permease protein domain GO:0016020 AM354_RS17955 28111bb89f74907b9ec009f08915d5bc 369 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 29-03-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AM354_RS17955 28111bb89f74907b9ec009f08915d5bc 369 SUPERFAMILY SSF51735 161 333 1.92E-43 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS17955 28111bb89f74907b9ec009f08915d5bc 369 Gene3D G3DSA:3.90.180.10 1 189 9.3E-59 T 29-03-2018 AM354_RS17955 28111bb89f74907b9ec009f08915d5bc 369 Pfam PF00107 Zinc-binding dehydrogenase 197 330 5.8E-21 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AM354_RS17955 28111bb89f74907b9ec009f08915d5bc 369 SMART SM00829 12 367 2.7E-4 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AM354_RS17955 28111bb89f74907b9ec009f08915d5bc 369 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 154 5.4E-26 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AM354_RS17955 28111bb89f74907b9ec009f08915d5bc 369 Gene3D G3DSA:3.40.50.720 190 310 2.9E-23 T 29-03-2018 AM354_RS17955 28111bb89f74907b9ec009f08915d5bc 369 SUPERFAMILY SSF50129 318 369 4.87E-12 T 29-03-2018 IPR011032 GroES-like AM354_RS17955 28111bb89f74907b9ec009f08915d5bc 369 SUPERFAMILY SSF50129 1 185 1.31E-70 T 29-03-2018 IPR011032 GroES-like AM354_RS17955 28111bb89f74907b9ec009f08915d5bc 369 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 2 369 1.8E-224 T 29-03-2018 IPR014183 Alcohol dehydrogenase class III GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00620+1.1.1.28|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00680+1.1.1.284|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6454|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-6901|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396|MetaCyc: PWY-7798|Reactome: R-HSA-71384 AM354_RS16745 b7b9ce52ae308d0373242c0e8879b027 313 ProSitePatterns PS01247 Inosine-uridine preferring nucleoside hydrolase family signature. 7 17 - T 29-03-2018 IPR015910 Inosine/uridine-preferring nucleoside hydrolase, conserved site GO:0016799 AM354_RS16745 b7b9ce52ae308d0373242c0e8879b027 313 SUPERFAMILY SSF53590 1 310 1.03E-106 T 29-03-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain AM354_RS16745 b7b9ce52ae308d0373242c0e8879b027 313 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 2 300 2.7E-94 T 29-03-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain AM354_RS16745 b7b9ce52ae308d0373242c0e8879b027 313 Gene3D G3DSA:3.90.245.10 1 313 3.1E-115 T 29-03-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain AM354_RS04030 46349caef6da1bf111355f880820908f 133 Pfam PF05106 Phage holin family (Lysis protein S) 9 119 1.4E-9 T 29-03-2018 IPR006481 Bacteriophage lambda, GpS, holin AM354_RS25665 1dbad4dbd19707588f9f05179a262948 349 Hamap MF_02030 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase [wecA]. 4 347 25.312 T 29-03-2018 IPR012750 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase GO:0000287|GO:0009103|GO:0009276|GO:0016021|GO:0016780|GO:0030145 MetaCyc: PWY-7290|MetaCyc: PWY-7530|MetaCyc: PWY-7815|MetaCyc: PWY-7816|MetaCyc: PWY-7819 AM354_RS25665 1dbad4dbd19707588f9f05179a262948 349 Pfam PF00953 Glycosyl transferase family 4 70 228 3.0E-28 T 29-03-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193 AM354_RS25665 1dbad4dbd19707588f9f05179a262948 349 TIGRFAM TIGR02380 ECA_wecA: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 4 334 9.5E-126 T 29-03-2018 IPR012750 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase GO:0000287|GO:0009103|GO:0009276|GO:0016021|GO:0016780|GO:0030145 MetaCyc: PWY-7290|MetaCyc: PWY-7530|MetaCyc: PWY-7815|MetaCyc: PWY-7816|MetaCyc: PWY-7819 AM354_RS22675 5e07cf5b8661f03fcb229a1a5bd3b572 498 SMART SM00086 340 380 5.4 T 29-03-2018 IPR001610 PAC motif AM354_RS22675 5e07cf5b8661f03fcb229a1a5bd3b572 498 SMART SM00086 215 255 45.0 T 29-03-2018 IPR001610 PAC motif AM354_RS22675 5e07cf5b8661f03fcb229a1a5bd3b572 498 SMART SM00086 93 137 68.0 T 29-03-2018 IPR001610 PAC motif AM354_RS22675 5e07cf5b8661f03fcb229a1a5bd3b572 498 Pfam PF13426 PAS domain 159 251 1.3E-5 T 29-03-2018 IPR000014 PAS domain AM354_RS22675 5e07cf5b8661f03fcb229a1a5bd3b572 498 Pfam PF13426 PAS domain 279 379 1.1E-7 T 29-03-2018 IPR000014 PAS domain AM354_RS22675 5e07cf5b8661f03fcb229a1a5bd3b572 498 Pfam PF00196 Bacterial regulatory proteins, luxR family 428 482 1.2E-17 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS22675 5e07cf5b8661f03fcb229a1a5bd3b572 498 SUPERFAMILY SSF46894 423 488 3.4E-20 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS22675 5e07cf5b8661f03fcb229a1a5bd3b572 498 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 428 442 1.8E-10 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS22675 5e07cf5b8661f03fcb229a1a5bd3b572 498 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 442 458 1.8E-10 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS22675 5e07cf5b8661f03fcb229a1a5bd3b572 498 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 458 470 1.8E-10 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS22675 5e07cf5b8661f03fcb229a1a5bd3b572 498 Gene3D G3DSA:3.30.450.20 2 141 2.4E-14 T 29-03-2018 AM354_RS22675 5e07cf5b8661f03fcb229a1a5bd3b572 498 Gene3D G3DSA:3.30.450.20 142 263 7.5E-19 T 29-03-2018 AM354_RS22675 5e07cf5b8661f03fcb229a1a5bd3b572 498 Pfam PF08448 PAS fold 22 136 1.2E-6 T 29-03-2018 IPR013656 PAS fold-4 AM354_RS22675 5e07cf5b8661f03fcb229a1a5bd3b572 498 SMART SM00421 425 482 8.1E-23 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS22675 5e07cf5b8661f03fcb229a1a5bd3b572 498 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 140 262 1.1E-10 T 29-03-2018 IPR000014 PAS domain AM354_RS22675 5e07cf5b8661f03fcb229a1a5bd3b572 498 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 263 387 6.1E-13 T 29-03-2018 IPR000014 PAS domain AM354_RS22675 5e07cf5b8661f03fcb229a1a5bd3b572 498 Gene3D G3DSA:3.30.450.20 264 391 1.9E-21 T 29-03-2018 AM354_RS22675 5e07cf5b8661f03fcb229a1a5bd3b572 498 SMART SM00091 142 209 0.0014 T 29-03-2018 IPR000014 PAS domain AM354_RS22675 5e07cf5b8661f03fcb229a1a5bd3b572 498 SMART SM00091 13 78 4.5E-4 T 29-03-2018 IPR000014 PAS domain AM354_RS22675 5e07cf5b8661f03fcb229a1a5bd3b572 498 SMART SM00091 267 334 3.1E-6 T 29-03-2018 IPR000014 PAS domain AM354_RS22675 5e07cf5b8661f03fcb229a1a5bd3b572 498 SUPERFAMILY SSF55785 255 378 8.86E-19 T 29-03-2018 IPR000014 PAS domain AM354_RS22675 5e07cf5b8661f03fcb229a1a5bd3b572 498 SUPERFAMILY SSF55785 11 126 1.18E-9 T 29-03-2018 IPR000014 PAS domain AM354_RS22675 5e07cf5b8661f03fcb229a1a5bd3b572 498 Gene3D G3DSA:1.10.10.10 392 491 1.3E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS22675 5e07cf5b8661f03fcb229a1a5bd3b572 498 SUPERFAMILY SSF55785 136 251 5.15E-14 T 29-03-2018 IPR000014 PAS domain AM354_RS11360 17878b8b552c499de4c9ab10ad059094 446 Pfam PF00202 Aminotransferase class-III 32 442 2.4E-86 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM354_RS11360 17878b8b552c499de4c9ab10ad059094 446 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 254 291 - T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM354_RS11360 17878b8b552c499de4c9ab10ad059094 446 Gene3D G3DSA:3.90.1150.10 334 446 1.3E-19 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS11360 17878b8b552c499de4c9ab10ad059094 446 PIRSF PIRSF000521 34 151 4.2E-4 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM354_RS11360 17878b8b552c499de4c9ab10ad059094 446 PIRSF PIRSF000521 196 445 4.9E-17 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM354_RS11360 17878b8b552c499de4c9ab10ad059094 446 Gene3D G3DSA:3.90.1150.10 2 195 1.2E-41 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS11360 17878b8b552c499de4c9ab10ad059094 446 Gene3D G3DSA:3.40.640.10 197 333 1.7E-44 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS11360 17878b8b552c499de4c9ab10ad059094 446 SUPERFAMILY SSF53383 27 443 3.81E-114 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS10085 b13d2e6be13a9d02af06eafe31cf5e24 255 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 221 3.4E-71 T 29-03-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AM354_RS10085 b13d2e6be13a9d02af06eafe31cf5e24 255 Gene3D G3DSA:3.40.1280.10 1 169 1.8E-72 T 29-03-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AM354_RS10085 b13d2e6be13a9d02af06eafe31cf5e24 255 SUPERFAMILY SSF75217 2 247 3.73E-102 T 29-03-2018 IPR029028 Alpha/beta knot methyltransferases AM354_RS10085 b13d2e6be13a9d02af06eafe31cf5e24 255 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 2 233 3.3E-110 T 29-03-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AM354_RS10085 b13d2e6be13a9d02af06eafe31cf5e24 255 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 255 119.333 T 29-03-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AM354_RS10085 b13d2e6be13a9d02af06eafe31cf5e24 255 PIRSF PIRSF000386 1 252 2.2E-102 T 29-03-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AM354_RS10085 b13d2e6be13a9d02af06eafe31cf5e24 255 Gene3D G3DSA:1.10.1270.20 170 254 1.4E-35 T 29-03-2018 AM354_RS15675 961ade1fadb0cb4cbc52f7b83dcc0f14 852 Gene3D G3DSA:2.40.50.140 348 411 9.3E-23 T 29-03-2018 AM354_RS15675 961ade1fadb0cb4cbc52f7b83dcc0f14 852 Pfam PF17092 Penicillin-binding protein OB-like domain 316 425 4.6E-31 T 29-03-2018 IPR031376 Penicillin-binding protein, OB-like domain AM354_RS15675 961ade1fadb0cb4cbc52f7b83dcc0f14 852 Gene3D G3DSA:3.40.710.10 412 800 1.2E-96 T 29-03-2018 AM354_RS15675 961ade1fadb0cb4cbc52f7b83dcc0f14 852 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 65 786 2.4E-172 T 29-03-2018 AM354_RS15675 961ade1fadb0cb4cbc52f7b83dcc0f14 852 Pfam PF00912 Transglycosylase 55 229 1.6E-65 T 29-03-2018 IPR001264 Glycosyl transferase, family 51 AM354_RS15675 961ade1fadb0cb4cbc52f7b83dcc0f14 852 SUPERFAMILY SSF53955 43 257 7.31E-82 T 29-03-2018 IPR023346 Lysozyme-like domain AM354_RS15675 961ade1fadb0cb4cbc52f7b83dcc0f14 852 SUPERFAMILY SSF56601 422 610 3.76E-113 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM354_RS15675 961ade1fadb0cb4cbc52f7b83dcc0f14 852 SUPERFAMILY SSF56601 211 233 3.76E-113 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM354_RS15675 961ade1fadb0cb4cbc52f7b83dcc0f14 852 SUPERFAMILY SSF56601 262 313 3.76E-113 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM354_RS15675 961ade1fadb0cb4cbc52f7b83dcc0f14 852 SUPERFAMILY SSF56601 672 836 3.76E-113 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM354_RS15675 961ade1fadb0cb4cbc52f7b83dcc0f14 852 Pfam PF00905 Penicillin binding protein transpeptidase domain 429 610 1.5E-24 T 29-03-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AM354_RS15675 961ade1fadb0cb4cbc52f7b83dcc0f14 852 Gene3D G3DSA:1.10.3810.10 47 246 2.0E-83 T 29-03-2018 IPR001264 Glycosyl transferase, family 51 AM354_RS10860 d899e3b19b6a8e96d640f64a764b307e 312 Gene3D G3DSA:2.40.30.30 180 310 2.1E-40 T 29-03-2018 IPR023465 Riboflavin kinase domain GO:0008531|GO:0009231 Reactome: R-HSA-196843 AM354_RS10860 d899e3b19b6a8e96d640f64a764b307e 312 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 18 306 3.3E-114 T 29-03-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 AM354_RS10860 d899e3b19b6a8e96d640f64a764b307e 312 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 18 51 6.8E-8 T 29-03-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AM354_RS10860 d899e3b19b6a8e96d640f64a764b307e 312 SUPERFAMILY SSF52374 15 175 2.39E-37 T 29-03-2018 AM354_RS10860 d899e3b19b6a8e96d640f64a764b307e 312 SMART SM00904 183 307 2.0E-63 T 29-03-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 Reactome: R-HSA-196843 AM354_RS10860 d899e3b19b6a8e96d640f64a764b307e 312 Pfam PF06574 FAD synthetase 12 167 1.1E-57 T 29-03-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 AM354_RS10860 d899e3b19b6a8e96d640f64a764b307e 312 Pfam PF01687 Riboflavin kinase 184 306 1.9E-38 T 29-03-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 Reactome: R-HSA-196843 AM354_RS10860 d899e3b19b6a8e96d640f64a764b307e 312 SUPERFAMILY SSF82114 174 307 6.76E-45 T 29-03-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 Reactome: R-HSA-196843 AM354_RS10860 d899e3b19b6a8e96d640f64a764b307e 312 PIRSF PIRSF004491 1 311 1.1E-104 T 29-03-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 AM354_RS10860 d899e3b19b6a8e96d640f64a764b307e 312 Gene3D G3DSA:3.40.50.620 1 179 1.3E-51 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS16250 60aac5c1b03bbdd595014ee168ce9257 435 Gene3D G3DSA:3.20.20.60 1 418 2.6E-153 T 29-03-2018 AM354_RS16250 60aac5c1b03bbdd595014ee168ce9257 435 SUPERFAMILY SSF51621 6 418 3.77E-152 T 29-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AM354_RS16250 60aac5c1b03bbdd595014ee168ce9257 435 ProSitePatterns PS00161 Isocitrate lyase signature. 194 199 - T 29-03-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824|GO:0008152 AM354_RS16250 60aac5c1b03bbdd595014ee168ce9257 435 PIRSF PIRSF001362 1 435 2.5E-223 T 29-03-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 AM354_RS16250 60aac5c1b03bbdd595014ee168ce9257 435 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 9 256 9.6E-114 T 29-03-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 AM354_RS16250 60aac5c1b03bbdd595014ee168ce9257 435 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 257 435 4.1E-89 T 29-03-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 AM354_RS16250 60aac5c1b03bbdd595014ee168ce9257 435 Pfam PF00463 Isocitrate lyase family 9 256 4.4E-61 T 29-03-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 AM354_RS16250 60aac5c1b03bbdd595014ee168ce9257 435 Pfam PF00463 Isocitrate lyase family 258 435 2.8E-48 T 29-03-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 AM354_RS20465 c03e8fdaa9d67ab67a0d0aa3d3cecfde 400 ProSitePatterns PS00211 ABC transporters family signature. 165 179 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS20465 c03e8fdaa9d67ab67a0d0aa3d3cecfde 400 SUPERFAMILY SSF52540 43 271 1.08E-74 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS20465 c03e8fdaa9d67ab67a0d0aa3d3cecfde 400 SUPERFAMILY SSF54631 276 393 3.41E-13 T 29-03-2018 AM354_RS20465 c03e8fdaa9d67ab67a0d0aa3d3cecfde 400 Pfam PF00571 CBS domain 347 393 1.0E-4 T 29-03-2018 IPR000644 CBS domain AM354_RS20465 c03e8fdaa9d67ab67a0d0aa3d3cecfde 400 SMART SM00382 53 242 7.0E-20 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS20465 c03e8fdaa9d67ab67a0d0aa3d3cecfde 400 Gene3D G3DSA:3.40.50.300 2 263 1.3E-73 T 29-03-2018 AM354_RS20465 c03e8fdaa9d67ab67a0d0aa3d3cecfde 400 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 36 394 1.1E-178 T 29-03-2018 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 AM354_RS20465 c03e8fdaa9d67ab67a0d0aa3d3cecfde 400 Gene3D G3DSA:3.10.580.10 264 396 3.8E-14 T 29-03-2018 AM354_RS20465 c03e8fdaa9d67ab67a0d0aa3d3cecfde 400 Pfam PF00005 ABC transporter 45 192 8.2E-34 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS22265 12fdab7f7d005f30cce7f8760f47e2fd 132 Pfam PF04076 Bacterial OB fold (BOF) protein 36 130 2.9E-36 T 29-03-2018 IPR005220 Bacterial OB-fold AM354_RS22265 12fdab7f7d005f30cce7f8760f47e2fd 132 TIGRFAM TIGR00156 TIGR00156: TIGR00156 family protein 1 130 1.7E-44 T 29-03-2018 IPR016052 Bacteriophage 933W, L0136 AM354_RS22265 12fdab7f7d005f30cce7f8760f47e2fd 132 Gene3D G3DSA:2.40.50.200 20 132 3.6E-39 T 29-03-2018 AM354_RS22265 12fdab7f7d005f30cce7f8760f47e2fd 132 SUPERFAMILY SSF101756 35 131 2.35E-34 T 29-03-2018 IPR005220 Bacterial OB-fold AM354_RS08205 7cfff42869ffef571469208a0370935a 266 Hamap MF_01241 Glucosamine-6-phosphate deaminase [nagB]. 1 247 40.845 T 29-03-2018 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70326 AM354_RS08205 7cfff42869ffef571469208a0370935a 266 ProSitePatterns PS01161 Glucosamine/galactosamine-6-phosphate isomerases signature. 125 143 - T 29-03-2018 IPR018321 Glucosamine-6-phosphate isomerase, conserved site GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70326 AM354_RS08205 7cfff42869ffef571469208a0370935a 266 SUPERFAMILY SSF100950 1 263 5.44E-104 T 29-03-2018 AM354_RS08205 7cfff42869ffef571469208a0370935a 266 Gene3D G3DSA:3.40.50.1360 1 266 1.2E-86 T 29-03-2018 AM354_RS08205 7cfff42869ffef571469208a0370935a 266 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 8 230 1.7E-20 T 29-03-2018 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 AM354_RS08205 7cfff42869ffef571469208a0370935a 266 TIGRFAM TIGR00502 nagB: glucosamine-6-phosphate deaminase 1 259 2.7E-138 T 29-03-2018 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70326 AM354_RS11520 27c68662e1ca866d28d159f166e3d46e 230 PRINTS PR01837 MgtC/SapB protein signature 13 32 2.0E-39 T 29-03-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 AM354_RS11520 27c68662e1ca866d28d159f166e3d46e 230 PRINTS PR01837 MgtC/SapB protein signature 32 50 2.0E-39 T 29-03-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 AM354_RS11520 27c68662e1ca866d28d159f166e3d46e 230 PRINTS PR01837 MgtC/SapB protein signature 58 80 2.0E-39 T 29-03-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 AM354_RS11520 27c68662e1ca866d28d159f166e3d46e 230 PRINTS PR01837 MgtC/SapB protein signature 85 109 2.0E-39 T 29-03-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 AM354_RS11520 27c68662e1ca866d28d159f166e3d46e 230 Pfam PF02308 MgtC family 10 131 1.3E-32 T 29-03-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 AM354_RS23025 33e89c798dcad7e41426ae14ead2dee4 209 SUPERFAMILY SSF52833 1 84 2.33E-21 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS23025 33e89c798dcad7e41426ae14ead2dee4 209 SUPERFAMILY SSF47616 78 205 3.96E-38 T 29-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like AM354_RS23025 33e89c798dcad7e41426ae14ead2dee4 209 Gene3D G3DSA:3.40.30.10 1 93 7.2E-26 T 29-03-2018 AM354_RS23025 33e89c798dcad7e41426ae14ead2dee4 209 Pfam PF02798 Glutathione S-transferase, N-terminal domain 4 81 7.0E-12 T 29-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AM354_RS23025 33e89c798dcad7e41426ae14ead2dee4 209 Pfam PF00043 Glutathione S-transferase, C-terminal domain 136 197 2.1E-13 T 29-03-2018 IPR004046 Glutathione S-transferase, C-terminal AM354_RS23025 33e89c798dcad7e41426ae14ead2dee4 209 Gene3D G3DSA:1.20.1050.10 144 201 1.6E-16 T 29-03-2018 AM354_RS23025 33e89c798dcad7e41426ae14ead2dee4 209 Gene3D G3DSA:1.20.1050.10 94 143 1.3E-14 T 29-03-2018 AM354_RS06940 06df3b074a3bab019bbb925501956cc7 110 SUPERFAMILY SSF69118 8 107 2.88E-29 T 29-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AM354_RS06940 06df3b074a3bab019bbb925501956cc7 110 Pfam PF02627 Carboxymuconolactone decarboxylase family 17 100 1.2E-22 T 29-03-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AM354_RS06940 06df3b074a3bab019bbb925501956cc7 110 Gene3D G3DSA:1.20.1290.10 1 110 2.1E-31 T 29-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AM354_RS12700 1ef5ea93727551b0a62698ef40cfe2b4 259 Pfam PF05690 Thiazole biosynthesis protein ThiG 3 247 7.5E-108 T 29-03-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 AM354_RS12700 1ef5ea93727551b0a62698ef40cfe2b4 259 Hamap MF_00443 Thiazole synthase [thiG]. 1 253 43.012 T 29-03-2018 IPR008867 Thiazole synthase GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 AM354_RS12700 1ef5ea93727551b0a62698ef40cfe2b4 259 SUPERFAMILY SSF110399 1 235 7.46E-85 T 29-03-2018 AM354_RS12700 1ef5ea93727551b0a62698ef40cfe2b4 259 Gene3D G3DSA:3.20.20.70 1 259 2.3E-59 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS25735 a3fc8d5c936d527aeb0b6a33da3ccb35 335 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 246 333 2.9E-23 T 29-03-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 AM354_RS25735 a3fc8d5c936d527aeb0b6a33da3ccb35 335 Gene3D G3DSA:3.40.47.10 173 334 1.1E-27 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS25735 a3fc8d5c936d527aeb0b6a33da3ccb35 335 SUPERFAMILY SSF53901 12 333 7.03E-43 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS25735 a3fc8d5c936d527aeb0b6a33da3ccb35 335 Gene3D G3DSA:3.40.47.10 11 172 1.2E-24 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS25735 a3fc8d5c936d527aeb0b6a33da3ccb35 335 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 117 193 3.9E-21 T 29-03-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 AM354_RS21310 44338889d0cf922db601e6f3cf416e35 393 Gene3D G3DSA:2.140.10.10 289 393 4.4E-16 T 29-03-2018 AM354_RS21310 44338889d0cf922db601e6f3cf416e35 393 Gene3D G3DSA:2.140.10.10 141 288 1.1E-28 T 29-03-2018 AM354_RS21310 44338889d0cf922db601e6f3cf416e35 393 SUPERFAMILY SSF50998 24 384 1.46E-80 T 29-03-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily AM354_RS21310 44338889d0cf922db601e6f3cf416e35 393 TIGRFAM TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL 6 392 7.0E-135 T 29-03-2018 IPR017687 Outer membrane protein assembly factor BamB AM354_RS21310 44338889d0cf922db601e6f3cf416e35 393 Hamap MF_00923 Outer membrane protein assembly factor BamB [bamB]. 2 393 40.485 T 29-03-2018 IPR017687 Outer membrane protein assembly factor BamB AM354_RS21310 44338889d0cf922db601e6f3cf416e35 393 SMART SM00564 330 362 2.1 T 29-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AM354_RS21310 44338889d0cf922db601e6f3cf416e35 393 SMART SM00564 156 187 6.4E-5 T 29-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AM354_RS21310 44338889d0cf922db601e6f3cf416e35 393 SMART SM00564 290 321 300.0 T 29-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AM354_RS21310 44338889d0cf922db601e6f3cf416e35 393 SMART SM00564 252 283 4.3E-4 T 29-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AM354_RS21310 44338889d0cf922db601e6f3cf416e35 393 SMART SM00564 201 232 61.0 T 29-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AM354_RS21310 44338889d0cf922db601e6f3cf416e35 393 SMART SM00564 116 147 2.0E-4 T 29-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AM354_RS21310 44338889d0cf922db601e6f3cf416e35 393 SMART SM00564 65 96 2.0 T 29-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AM354_RS21310 44338889d0cf922db601e6f3cf416e35 393 Gene3D G3DSA:2.140.10.10 24 111 9.2E-7 T 29-03-2018 AM354_RS21310 44338889d0cf922db601e6f3cf416e35 393 Pfam PF13360 PQQ-like domain 79 320 7.0E-54 T 29-03-2018 IPR002372 Pyrrolo-quinoline quinone repeat AM354_RS07825 21db340d6f970d8ab6d6d08107ed76d3 495 Pfam PF00005 ABC transporter 276 429 8.1E-25 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS07825 21db340d6f970d8ab6d6d08107ed76d3 495 Pfam PF00005 ABC transporter 24 163 1.3E-17 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS07825 21db340d6f970d8ab6d6d08107ed76d3 495 Gene3D G3DSA:3.40.50.300 241 483 1.5E-42 T 29-03-2018 AM354_RS07825 21db340d6f970d8ab6d6d08107ed76d3 495 SUPERFAMILY SSF52540 251 479 5.09E-41 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS07825 21db340d6f970d8ab6d6d08107ed76d3 495 Gene3D G3DSA:3.40.50.300 2 236 9.3E-34 T 29-03-2018 AM354_RS07825 21db340d6f970d8ab6d6d08107ed76d3 495 SMART SM00382 285 479 4.6E-8 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS07825 21db340d6f970d8ab6d6d08107ed76d3 495 SMART SM00382 28 227 4.2E-7 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS07825 21db340d6f970d8ab6d6d08107ed76d3 495 SUPERFAMILY SSF52540 8 225 1.52E-35 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS13795 2a1e27967d1ddc40dd120eb1652cb71c 416 Gene3D G3DSA:3.90.1150.10 292 413 1.0E-19 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS13795 2a1e27967d1ddc40dd120eb1652cb71c 416 Pfam PF00155 Aminotransferase class I and II 66 402 6.7E-22 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM354_RS13795 2a1e27967d1ddc40dd120eb1652cb71c 416 Gene3D G3DSA:3.40.640.10 69 291 3.5E-36 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS13795 2a1e27967d1ddc40dd120eb1652cb71c 416 SUPERFAMILY SSF53383 24 411 3.44E-62 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS03350 5d7b22ba2a14732c0e7ecd7c281788ff 326 Gene3D G3DSA:3.90.550.10 3 218 7.9E-33 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS03350 5d7b22ba2a14732c0e7ecd7c281788ff 326 SUPERFAMILY SSF53448 7 235 1.31E-40 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS03350 5d7b22ba2a14732c0e7ecd7c281788ff 326 Pfam PF00535 Glycosyl transferase family 2 11 172 1.0E-33 T 29-03-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AM354_RS03350 5d7b22ba2a14732c0e7ecd7c281788ff 326 Hamap MF_01164 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [arnC]. 2 326 62.07 T 29-03-2018 IPR022857 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase GO:0016780 KEGG: 00520+2.4.2.53 AM354_RS17330 5e7097cfae457d2e5b7bdb940d669282 510 SUPERFAMILY SSF53649 39 504 1.49E-149 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AM354_RS17330 5e7097cfae457d2e5b7bdb940d669282 510 PRINTS PR00113 Alkaline phosphatase signature 225 235 3.7E-43 T 29-03-2018 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AM354_RS17330 5e7097cfae457d2e5b7bdb940d669282 510 PRINTS PR00113 Alkaline phosphatase signature 316 345 3.7E-43 T 29-03-2018 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AM354_RS17330 5e7097cfae457d2e5b7bdb940d669282 510 PRINTS PR00113 Alkaline phosphatase signature 163 183 3.7E-43 T 29-03-2018 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AM354_RS17330 5e7097cfae457d2e5b7bdb940d669282 510 PRINTS PR00113 Alkaline phosphatase signature 116 131 3.7E-43 T 29-03-2018 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AM354_RS17330 5e7097cfae457d2e5b7bdb940d669282 510 PRINTS PR00113 Alkaline phosphatase signature 60 80 3.7E-43 T 29-03-2018 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AM354_RS17330 5e7097cfae457d2e5b7bdb940d669282 510 SMART SM00098 61 504 2.6E-156 T 29-03-2018 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AM354_RS17330 5e7097cfae457d2e5b7bdb940d669282 510 Gene3D G3DSA:3.40.720.10 22 510 7.6E-143 T 29-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 AM354_RS17330 5e7097cfae457d2e5b7bdb940d669282 510 Pfam PF00245 Alkaline phosphatase 60 501 8.5E-124 T 29-03-2018 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AM354_RS17870 67f745ccb5eb794e4e36d479c13beb00 605 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 5 31 8.4E-5 T 29-03-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal AM354_RS17870 67f745ccb5eb794e4e36d479c13beb00 605 Pfam PF00394 Multicopper oxidase 172 349 5.8E-38 T 29-03-2018 IPR001117 Multicopper oxidase, type 1 GO:0055114 AM354_RS17870 67f745ccb5eb794e4e36d479c13beb00 605 TIGRFAM TIGR01480 copper_res_A: copper-resistance protein, CopA family 5 604 2.8E-300 T 29-03-2018 IPR006376 Copper-resistance protein CopA GO:0005507|GO:0042597 AM354_RS17870 67f745ccb5eb794e4e36d479c13beb00 605 ProSitePatterns PS00079 Multicopper oxidases signature 1. 581 601 - T 29-03-2018 IPR033138 Multicopper oxidases, conserved site AM354_RS17870 67f745ccb5eb794e4e36d479c13beb00 605 Gene3D G3DSA:2.60.40.420 168 375 8.5E-46 T 29-03-2018 IPR008972 Cupredoxin AM354_RS17870 67f745ccb5eb794e4e36d479c13beb00 605 Pfam PF07732 Multicopper oxidase 52 163 4.7E-40 T 29-03-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 AM354_RS17870 67f745ccb5eb794e4e36d479c13beb00 605 Gene3D G3DSA:2.60.40.420 402 604 1.1E-50 T 29-03-2018 IPR008972 Cupredoxin AM354_RS17870 67f745ccb5eb794e4e36d479c13beb00 605 ProSitePatterns PS00080 Multicopper oxidases signature 2. 586 597 - T 29-03-2018 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 AM354_RS17870 67f745ccb5eb794e4e36d479c13beb00 605 SUPERFAMILY SSF49503 166 372 7.18E-59 T 29-03-2018 IPR008972 Cupredoxin AM354_RS17870 67f745ccb5eb794e4e36d479c13beb00 605 Pfam PF07731 Multicopper oxidase 492 604 1.7E-25 T 29-03-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 AM354_RS17870 67f745ccb5eb794e4e36d479c13beb00 605 SUPERFAMILY SSF49503 18 187 1.73E-38 T 29-03-2018 IPR008972 Cupredoxin AM354_RS17870 67f745ccb5eb794e4e36d479c13beb00 605 SUPERFAMILY SSF49503 455 603 1.46E-37 T 29-03-2018 IPR008972 Cupredoxin AM354_RS17870 67f745ccb5eb794e4e36d479c13beb00 605 Gene3D G3DSA:2.60.40.420 43 167 2.7E-31 T 29-03-2018 IPR008972 Cupredoxin AM354_RS04125 f903f676a9e7ef2b761fb625dd477028 291 Pfam PF00145 C-5 cytosine-specific DNA methylase 80 179 3.4E-11 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS04125 f903f676a9e7ef2b761fb625dd477028 291 SUPERFAMILY SSF53335 54 280 2.66E-31 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS04125 f903f676a9e7ef2b761fb625dd477028 291 Gene3D G3DSA:3.40.50.150 2 193 1.0E-23 T 29-03-2018 AM354_RS16830 4dd38f98e3c80f33781946ca3c167888 108 Gene3D G3DSA:1.10.1790.10 2 107 4.6E-10 T 29-03-2018 IPR011608 PRD domain GO:0006355 AM354_RS16830 4dd38f98e3c80f33781946ca3c167888 108 TIGRFAM TIGR03582 EF_0829: PRD domain protein, EF_0829/AHA_3910 family 6 106 2.4E-39 T 29-03-2018 IPR020044 PRD domain protein, EF0829/AHA3910 AM354_RS16830 4dd38f98e3c80f33781946ca3c167888 108 SUPERFAMILY SSF63520 28 106 5.89E-7 T 29-03-2018 IPR011608 PRD domain GO:0006355 AM354_RS17270 e0f63aa874b218a4c9d359851efe3e90 71 Gene3D G3DSA:1.20.5.1150 16 52 1.0E-17 T 29-03-2018 AM354_RS17270 e0f63aa874b218a4c9d359851efe3e90 71 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 21.283 T 29-03-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS17270 e0f63aa874b218a4c9d359851efe3e90 71 Pfam PF01165 Ribosomal protein S21 4 56 6.3E-22 T 29-03-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS17270 e0f63aa874b218a4c9d359851efe3e90 71 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 29-03-2018 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS17270 e0f63aa874b218a4c9d359851efe3e90 71 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 2.8E-17 T 29-03-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS17270 e0f63aa874b218a4c9d359851efe3e90 71 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 2.8E-17 T 29-03-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS17270 e0f63aa874b218a4c9d359851efe3e90 71 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 2.8E-17 T 29-03-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS17270 e0f63aa874b218a4c9d359851efe3e90 71 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 2.8E-17 T 29-03-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS17270 e0f63aa874b218a4c9d359851efe3e90 71 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 59 4.1E-24 T 29-03-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS17270 e0f63aa874b218a4c9d359851efe3e90 71 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 15 56 1.0E-15 T 29-03-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS21955 fade99678a6d12f3bfc6691b40821393 345 Gene3D G3DSA:3.90.650.10 171 345 5.2E-63 T 29-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain AM354_RS21955 fade99678a6d12f3bfc6691b40821393 345 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 7 344 47.15 T 29-03-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AM354_RS21955 fade99678a6d12f3bfc6691b40821393 345 Pfam PF02769 AIR synthase related protein, C-terminal domain 176 340 2.9E-39 T 29-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain AM354_RS21955 fade99678a6d12f3bfc6691b40821393 345 SUPERFAMILY SSF56042 171 342 1.15E-63 T 29-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain AM354_RS21955 fade99678a6d12f3bfc6691b40821393 345 Gene3D G3DSA:3.30.1330.10 32 161 2.2E-53 T 29-03-2018 IPR016188 PurM-like, N-terminal domain AM354_RS21955 fade99678a6d12f3bfc6691b40821393 345 Pfam PF00586 AIR synthase related protein, N-terminal domain 59 164 4.7E-16 T 29-03-2018 IPR016188 PurM-like, N-terminal domain AM354_RS21955 fade99678a6d12f3bfc6691b40821393 345 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 7 335 5.6E-153 T 29-03-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AM354_RS21955 fade99678a6d12f3bfc6691b40821393 345 SUPERFAMILY SSF55326 7 170 4.04E-53 T 29-03-2018 IPR016188 PurM-like, N-terminal domain AM354_RS04280 1c6e923d1214cf710e329b81caa87f39 306 Gene3D G3DSA:3.30.420.40 1 115 2.1E-20 T 29-03-2018 AM354_RS04280 1c6e923d1214cf710e329b81caa87f39 306 ProSitePatterns PS01125 ROK family signature. 130 157 - T 29-03-2018 IPR000600 ROK family Reactome: R-HSA-4085001 AM354_RS04280 1c6e923d1214cf710e329b81caa87f39 306 Pfam PF00480 ROK family 2 299 8.6E-70 T 29-03-2018 IPR000600 ROK family Reactome: R-HSA-4085001 AM354_RS04280 1c6e923d1214cf710e329b81caa87f39 306 Hamap MF_01271 N-acetyl-D-glucosamine kinase [nagK]. 1 304 66.762 T 29-03-2018 IPR023505 N-acetyl-D-glucosamine kinase GO:0045127 KEGG: 00520+2.7.1.59|MetaCyc: PWY-6517|MetaCyc: PWY-6906 AM354_RS04280 1c6e923d1214cf710e329b81caa87f39 306 Gene3D G3DSA:3.30.420.40 116 304 1.4E-50 T 29-03-2018 AM354_RS04280 1c6e923d1214cf710e329b81caa87f39 306 SUPERFAMILY SSF53067 1 301 9.72E-58 T 29-03-2018 AM354_RS17535 e57917551a3826e54367d6ca8826c2b0 219 Pfam PF13460 NAD(P)H-binding 8 193 3.2E-39 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS17535 e57917551a3826e54367d6ca8826c2b0 219 SUPERFAMILY SSF51735 3 205 7.47E-35 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS17535 e57917551a3826e54367d6ca8826c2b0 219 Gene3D G3DSA:3.40.50.720 2 218 6.2E-29 T 29-03-2018 AM354_RS05700 de060aaf1361a3dbb2a106ee656d2791 286 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 168 178 - T 29-03-2018 IPR024002 Formate/nitrite transporter, conserved site AM354_RS05700 de060aaf1361a3dbb2a106ee656d2791 286 TIGRFAM TIGR04060 formate_focA: formate transporter FocA 15 279 1.9E-128 T 29-03-2018 IPR023999 Formate transporter FocA, putative GO:0015499|GO:0015724|GO:0016021 AM354_RS05700 de060aaf1361a3dbb2a106ee656d2791 286 TIGRFAM TIGR00790 fnt: formate/nitrite transporter 26 280 3.3E-95 T 29-03-2018 IPR000292 Formate/nitrite transporter GO:0005215|GO:0006810|GO:0016020 AM354_RS05700 de060aaf1361a3dbb2a106ee656d2791 286 Pfam PF01226 Formate/nitrite transporter 16 276 2.7E-75 T 29-03-2018 IPR000292 Formate/nitrite transporter GO:0005215|GO:0006810|GO:0016020 AM354_RS05700 de060aaf1361a3dbb2a106ee656d2791 286 Gene3D G3DSA:1.20.1080.10 12 286 2.6E-79 T 29-03-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 AM354_RS05700 de060aaf1361a3dbb2a106ee656d2791 286 ProSitePatterns PS01005 Formate and nitrite transporters signature 1. 83 92 - T 29-03-2018 IPR024002 Formate/nitrite transporter, conserved site AM354_RS16635 e9ff87b2f6cbc07850e519f60813e1f6 98 Pfam PF02954 Bacterial regulatory protein, Fis family 55 95 3.8E-14 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AM354_RS16635 e9ff87b2f6cbc07850e519f60813e1f6 98 PRINTS PR01591 DNA-binding protein FIS signature 57 69 7.6E-35 T 29-03-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 AM354_RS16635 e9ff87b2f6cbc07850e519f60813e1f6 98 PRINTS PR01591 DNA-binding protein FIS signature 42 57 7.6E-35 T 29-03-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 AM354_RS16635 e9ff87b2f6cbc07850e519f60813e1f6 98 PRINTS PR01591 DNA-binding protein FIS signature 26 42 7.6E-35 T 29-03-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 AM354_RS16635 e9ff87b2f6cbc07850e519f60813e1f6 98 PRINTS PR01591 DNA-binding protein FIS signature 9 26 7.6E-35 T 29-03-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 AM354_RS16635 e9ff87b2f6cbc07850e519f60813e1f6 98 Gene3D G3DSA:1.10.10.60 1 98 4.2E-27 T 29-03-2018 AM354_RS16635 e9ff87b2f6cbc07850e519f60813e1f6 98 SUPERFAMILY SSF46689 4 98 3.88E-27 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS16635 e9ff87b2f6cbc07850e519f60813e1f6 98 PIRSF PIRSF002097 1 98 4.9E-46 T 29-03-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 AM354_RS16635 e9ff87b2f6cbc07850e519f60813e1f6 98 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 78 98 8.3E-13 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AM354_RS16635 e9ff87b2f6cbc07850e519f60813e1f6 98 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 61 78 8.3E-13 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AM354_RS16635 e9ff87b2f6cbc07850e519f60813e1f6 98 Hamap MF_00166 DNA-binding protein Fis [fis]. 1 98 33.769 T 29-03-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 AM354_RS17170 44e17e3be9ee13f309e265a9039df723 495 Pfam PF08666 SAF domain 11 80 2.5E-15 T 29-03-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 AM354_RS17170 44e17e3be9ee13f309e265a9039df723 495 Pfam PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus 108 494 3.8E-152 T 29-03-2018 IPR007392 D-galactarate/Altronate dehydratase, C-terminal GO:0016829 AM354_RS17170 44e17e3be9ee13f309e265a9039df723 495 SMART SM00858 11 82 8.2E-17 T 29-03-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 AM354_RS18595 0d3f965d658f14049e3111fbb06de85d 334 Pfam PF02371 Transposase IS116/IS110/IS902 family 210 286 9.6E-20 T 29-03-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AM354_RS18595 0d3f965d658f14049e3111fbb06de85d 334 Pfam PF01548 Transposase 7 147 6.5E-19 T 29-03-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AM354_RS17645 0d3f965d658f14049e3111fbb06de85d 334 Pfam PF02371 Transposase IS116/IS110/IS902 family 210 286 9.6E-20 T 29-03-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AM354_RS17645 0d3f965d658f14049e3111fbb06de85d 334 Pfam PF01548 Transposase 7 147 6.5E-19 T 29-03-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AM354_RS18575 0d3f965d658f14049e3111fbb06de85d 334 Pfam PF02371 Transposase IS116/IS110/IS902 family 210 286 9.6E-20 T 29-03-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AM354_RS18575 0d3f965d658f14049e3111fbb06de85d 334 Pfam PF01548 Transposase 7 147 6.5E-19 T 29-03-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AM354_RS08565 7a1c2fac2bd93712c40d7ebfe450a370 318 SUPERFAMILY SSF55729 166 296 4.8E-23 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS08565 7a1c2fac2bd93712c40d7ebfe450a370 318 Pfam PF00583 Acetyltransferase (GNAT) family 201 290 4.8E-12 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS08565 7a1c2fac2bd93712c40d7ebfe450a370 318 SUPERFAMILY SSF46785 4 140 5.06E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS08565 7a1c2fac2bd93712c40d7ebfe450a370 318 SMART SM00347 26 126 9.1E-5 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM354_RS08565 7a1c2fac2bd93712c40d7ebfe450a370 318 Gene3D G3DSA:3.40.630.30 149 313 5.6E-23 T 29-03-2018 AM354_RS08565 7a1c2fac2bd93712c40d7ebfe450a370 318 Gene3D G3DSA:1.10.10.10 1 148 6.0E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS08565 7a1c2fac2bd93712c40d7ebfe450a370 318 Pfam PF12802 MarR family 33 89 1.2E-10 T 29-03-2018 AM354_RS16240 a25f8a701ee75ef5c45f49151ced788d 309 PIRSF PIRSF000450 1 308 2.1E-146 T 29-03-2018 IPR033752 MetA family KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46 AM354_RS16240 a25f8a701ee75ef5c45f49151ced788d 309 TIGRFAM TIGR01001 metA: homoserine O-succinyltransferase 1 302 5.5E-159 T 29-03-2018 IPR005697 Homoserine O-succinyltransferase MetA GO:0005737|GO:0008899|GO:0019281 KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46 AM354_RS16240 a25f8a701ee75ef5c45f49151ced788d 309 Gene3D G3DSA:3.40.50.880 34 301 3.5E-41 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS16240 a25f8a701ee75ef5c45f49151ced788d 309 ProDom PD037892 HOMOSERINE O-SUCCINYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIOSYNTHESIS TRANSSUCCINYLASE HTS METHIONINE O- AMINO-ACID 36 289 5.0E-132 T 29-03-2018 AM354_RS16240 a25f8a701ee75ef5c45f49151ced788d 309 Hamap MF_00295 Homoserine O-succinyltransferase [metA]. 1 301 52.514 T 29-03-2018 IPR005697 Homoserine O-succinyltransferase MetA GO:0005737|GO:0008899|GO:0019281 KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46 AM354_RS16240 a25f8a701ee75ef5c45f49151ced788d 309 SUPERFAMILY SSF52317 18 297 1.99E-102 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS16240 a25f8a701ee75ef5c45f49151ced788d 309 Pfam PF04204 Homoserine O-succinyltransferase 2 299 9.5E-133 T 29-03-2018 IPR033752 MetA family KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46 AM354_RS22505 33296037bc50b287d49f11f93d622559 225 SUPERFAMILY SSF49584 142 220 3.01E-23 T 29-03-2018 IPR016148 Pili assembly chaperone, C-terminal AM354_RS22505 33296037bc50b287d49f11f93d622559 225 PRINTS PR00969 Pili chaperone signature 96 113 3.0E-32 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS22505 33296037bc50b287d49f11f93d622559 225 PRINTS PR00969 Pili chaperone signature 68 89 3.0E-32 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS22505 33296037bc50b287d49f11f93d622559 225 PRINTS PR00969 Pili chaperone signature 120 135 3.0E-32 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS22505 33296037bc50b287d49f11f93d622559 225 PRINTS PR00969 Pili chaperone signature 21 30 3.0E-32 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS22505 33296037bc50b287d49f11f93d622559 225 PRINTS PR00969 Pili chaperone signature 156 171 3.0E-32 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS22505 33296037bc50b287d49f11f93d622559 225 SUPERFAMILY SSF49354 16 138 8.11E-40 T 29-03-2018 IPR008962 PapD-like AM354_RS22505 33296037bc50b287d49f11f93d622559 225 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 21 138 9.3E-39 T 29-03-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 AM354_RS22505 33296037bc50b287d49f11f93d622559 225 Gene3D G3DSA:2.60.40.10 21 136 2.9E-35 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS22505 33296037bc50b287d49f11f93d622559 225 Gene3D G3DSA:2.60.40.10 141 225 1.1E-24 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS22505 33296037bc50b287d49f11f93d622559 225 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 161 218 3.8E-17 T 29-03-2018 IPR016148 Pili assembly chaperone, C-terminal AM354_RS02930 dd11a2d5cb1422dd3dc85b8bc799c28e 504 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 17 485 8.4E-139 T 29-03-2018 IPR005279 Dipeptide/tripeptide permease GO:0015197|GO:0015833|GO:0016020 AM354_RS02930 dd11a2d5cb1422dd3dc85b8bc799c28e 504 Pfam PF00854 POT family 89 445 1.2E-87 T 29-03-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-427975 AM354_RS02930 dd11a2d5cb1422dd3dc85b8bc799c28e 504 Gene3D G3DSA:1.20.1250.20 8 210 3.2E-26 T 29-03-2018 AM354_RS02930 dd11a2d5cb1422dd3dc85b8bc799c28e 504 SUPERFAMILY SSF103473 259 492 1.96E-30 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS02930 dd11a2d5cb1422dd3dc85b8bc799c28e 504 SUPERFAMILY SSF103473 19 212 1.96E-30 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS02930 dd11a2d5cb1422dd3dc85b8bc799c28e 504 Gene3D G3DSA:1.20.1250.20 261 504 2.1E-16 T 29-03-2018 AM354_RS02930 dd11a2d5cb1422dd3dc85b8bc799c28e 504 Hamap MF_01878 Dipeptide and tripeptide permease A [dtpA]. 1 489 54.006 T 29-03-2018 IPR023517 Amino acid/peptide transporter family, dipeptide and tripeptide permease A GO:0006857|GO:0015197|GO:0016020 AM354_RS02930 dd11a2d5cb1422dd3dc85b8bc799c28e 504 ProSitePatterns PS01022 PTR2 family proton/oligopeptide symporters signature 1. 77 101 - T 29-03-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 AM354_RS02930 dd11a2d5cb1422dd3dc85b8bc799c28e 504 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 152 164 - T 29-03-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 AM354_RS06000 7493da92fd20d2fa7b6b02ed6d324d89 281 Pfam PF01048 Phosphorylase superfamily 31 259 1.9E-37 T 29-03-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AM354_RS06000 7493da92fd20d2fa7b6b02ed6d324d89 281 SUPERFAMILY SSF53167 29 278 1.15E-44 T 29-03-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AM354_RS06000 7493da92fd20d2fa7b6b02ed6d324d89 281 Gene3D G3DSA:3.40.50.1580 23 281 1.5E-36 T 29-03-2018 AM354_RS16505 539216c9a406a737b5d5331388eb519f 359 Gene3D G3DSA:2.40.37.10 217 359 2.0E-53 T 29-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AM354_RS16505 539216c9a406a737b5d5331388eb519f 359 Gene3D G3DSA:3.20.20.10 1 216 4.3E-46 T 29-03-2018 IPR029066 PLP-binding barrel AM354_RS16505 539216c9a406a737b5d5331388eb519f 359 PRINTS PR00992 Alanine racemase signature 339 352 5.1E-73 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM354_RS16505 539216c9a406a737b5d5331388eb519f 359 PRINTS PR00992 Alanine racemase signature 192 219 5.1E-73 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM354_RS16505 539216c9a406a737b5d5331388eb519f 359 PRINTS PR00992 Alanine racemase signature 155 166 5.1E-73 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM354_RS16505 539216c9a406a737b5d5331388eb519f 359 PRINTS PR00992 Alanine racemase signature 249 264 5.1E-73 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM354_RS16505 539216c9a406a737b5d5331388eb519f 359 PRINTS PR00992 Alanine racemase signature 287 304 5.1E-73 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM354_RS16505 539216c9a406a737b5d5331388eb519f 359 PRINTS PR00992 Alanine racemase signature 60 78 5.1E-73 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM354_RS16505 539216c9a406a737b5d5331388eb519f 359 PRINTS PR00992 Alanine racemase signature 120 132 5.1E-73 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM354_RS16505 539216c9a406a737b5d5331388eb519f 359 PRINTS PR00992 Alanine racemase signature 26 42 5.1E-73 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM354_RS16505 539216c9a406a737b5d5331388eb519f 359 PRINTS PR00992 Alanine racemase signature 266 281 5.1E-73 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM354_RS16505 539216c9a406a737b5d5331388eb519f 359 SMART SM01005 233 357 3.0E-62 T 29-03-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM354_RS16505 539216c9a406a737b5d5331388eb519f 359 Pfam PF01168 Alanine racemase, N-terminal domain 8 219 4.0E-71 T 29-03-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM354_RS16505 539216c9a406a737b5d5331388eb519f 359 Hamap MF_01201 Alanine racemase. 1 357 34.65 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM354_RS16505 539216c9a406a737b5d5331388eb519f 359 TIGRFAM TIGR00492 alr: alanine racemase 3 357 2.6E-137 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM354_RS16505 539216c9a406a737b5d5331388eb519f 359 Pfam PF00842 Alanine racemase, C-terminal domain 233 356 1.2E-39 T 29-03-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM354_RS16505 539216c9a406a737b5d5331388eb519f 359 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 31 41 - T 29-03-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM354_RS16505 539216c9a406a737b5d5331388eb519f 359 SUPERFAMILY SSF51419 8 234 2.04E-71 T 29-03-2018 IPR029066 PLP-binding barrel AM354_RS16505 539216c9a406a737b5d5331388eb519f 359 SUPERFAMILY SSF50621 227 358 7.32E-44 T 29-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AM354_RS00425 492c319510ab9bd244cef5f71a81fbd2 336 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 324 5.4E-58 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS00425 492c319510ab9bd244cef5f71a81fbd2 336 PRINTS PR01713 Nucleotide sugar epimerase signature 216 231 1.7E-28 T 29-03-2018 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 Reactome: R-HSA-70370 AM354_RS00425 492c319510ab9bd244cef5f71a81fbd2 336 PRINTS PR01713 Nucleotide sugar epimerase signature 29 45 1.7E-28 T 29-03-2018 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 Reactome: R-HSA-70370 AM354_RS00425 492c319510ab9bd244cef5f71a81fbd2 336 PRINTS PR01713 Nucleotide sugar epimerase signature 295 312 1.7E-28 T 29-03-2018 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 Reactome: R-HSA-70370 AM354_RS00425 492c319510ab9bd244cef5f71a81fbd2 336 PRINTS PR01713 Nucleotide sugar epimerase signature 256 271 1.7E-28 T 29-03-2018 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 Reactome: R-HSA-70370 AM354_RS00425 492c319510ab9bd244cef5f71a81fbd2 336 Gene3D G3DSA:3.90.25.10 191 336 2.3E-37 T 29-03-2018 AM354_RS00425 492c319510ab9bd244cef5f71a81fbd2 336 Gene3D G3DSA:3.40.50.720 2 190 4.7E-36 T 29-03-2018 AM354_RS00425 492c319510ab9bd244cef5f71a81fbd2 336 SUPERFAMILY SSF51735 1 333 6.89E-91 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS02115 c870acb8bba5eb1d95afc824a5e16bbd 306 SUPERFAMILY SSF161098 112 291 3.92E-26 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS02115 c870acb8bba5eb1d95afc824a5e16bbd 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 132 289 4.7E-18 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS02115 c870acb8bba5eb1d95afc824a5e16bbd 306 TIGRFAM TIGR01183 ntrB: nitrate ABC transporter, permease protein 98 292 1.3E-70 T 29-03-2018 IPR005889 Nitrate transport permease GO:0015112|GO:0015706|GO:0016021 AM354_RS02115 c870acb8bba5eb1d95afc824a5e16bbd 306 Gene3D G3DSA:1.10.3720.10 55 306 2.0E-28 T 29-03-2018 AM354_RS20000 48c3b6415d2aa0dd8cc389ac2c5557b7 167 SUPERFAMILY SSF54523 16 158 6.36E-9 T 29-03-2018 AM354_RS20000 48c3b6415d2aa0dd8cc389ac2c5557b7 167 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 13 34 1.2E-6 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site AM354_RS20000 48c3b6415d2aa0dd8cc389ac2c5557b7 167 Pfam PF07963 Prokaryotic N-terminal methylation motif 12 33 1.9E-6 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site AM354_RS17625 f3a377581114112ccea51da88ce00d7e 429 TIGRFAM TIGR00935 2a45: arsenite/antimonite efflux pump membrane protein 3 427 3.7E-214 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS17625 f3a377581114112ccea51da88ce00d7e 429 Pfam PF02040 Arsenical pump membrane protein 4 423 4.7E-155 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS17625 f3a377581114112ccea51da88ce00d7e 429 PRINTS PR00758 Arsenical pump membrane protein signature 101 125 7.3E-122 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS17625 f3a377581114112ccea51da88ce00d7e 429 PRINTS PR00758 Arsenical pump membrane protein signature 323 345 7.3E-122 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS17625 f3a377581114112ccea51da88ce00d7e 429 PRINTS PR00758 Arsenical pump membrane protein signature 364 389 7.3E-122 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS17625 f3a377581114112ccea51da88ce00d7e 429 PRINTS PR00758 Arsenical pump membrane protein signature 217 242 7.3E-122 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS17625 f3a377581114112ccea51da88ce00d7e 429 PRINTS PR00758 Arsenical pump membrane protein signature 144 168 7.3E-122 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS17625 f3a377581114112ccea51da88ce00d7e 429 PRINTS PR00758 Arsenical pump membrane protein signature 177 200 7.3E-122 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS17625 f3a377581114112ccea51da88ce00d7e 429 PRINTS PR00758 Arsenical pump membrane protein signature 278 302 7.3E-122 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS17625 f3a377581114112ccea51da88ce00d7e 429 PRINTS PR00758 Arsenical pump membrane protein signature 397 421 7.3E-122 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS16855 b75ee7e6fe00512b32dbd48a6f5cfe99 379 Pfam PF01979 Amidohydrolase family 291 342 3.8E-8 T 29-03-2018 IPR006680 Amidohydrolase-related GO:0016787 AM354_RS16855 b75ee7e6fe00512b32dbd48a6f5cfe99 379 SUPERFAMILY SSF51556 53 318 8.43E-73 T 29-03-2018 IPR032466 Metal-dependent hydrolase AM354_RS16855 b75ee7e6fe00512b32dbd48a6f5cfe99 379 SUPERFAMILY SSF51338 1 53 8.31E-12 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM354_RS16855 b75ee7e6fe00512b32dbd48a6f5cfe99 379 SUPERFAMILY SSF51338 318 340 8.31E-12 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM354_RS16855 b75ee7e6fe00512b32dbd48a6f5cfe99 379 TIGRFAM TIGR03583 EF_0837: putative amidohydrolase, EF_0837/AHA_3915 family 2 366 2.2E-162 T 29-03-2018 IPR020043 Amidohydrolase EF0837/AHA3915, putative AM354_RS16855 b75ee7e6fe00512b32dbd48a6f5cfe99 379 Gene3D G3DSA:3.20.20.140 67 316 2.2E-43 T 29-03-2018 AM354_RS16855 b75ee7e6fe00512b32dbd48a6f5cfe99 379 Gene3D G3DSA:2.30.40.10 1 66 2.9E-9 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM354_RS16855 b75ee7e6fe00512b32dbd48a6f5cfe99 379 PIRSF PIRSF039004 1 376 3.3E-129 T 29-03-2018 IPR020043 Amidohydrolase EF0837/AHA3915, putative AM354_RS23390 696c1b29193fa7fafe5a87e333ebf88e 146 SUPERFAMILY SSF53955 1 146 1.33E-48 T 29-03-2018 IPR023346 Lysozyme-like domain AM354_RS23390 696c1b29193fa7fafe5a87e333ebf88e 146 Pfam PF00959 Phage lysozyme 28 138 1.4E-18 T 29-03-2018 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 AM354_RS23390 696c1b29193fa7fafe5a87e333ebf88e 146 Gene3D G3DSA:1.10.530.40 1 146 5.4E-52 T 29-03-2018 IPR023347 Lysozyme domain GO:0003796 AM354_RS16850 4d3c36ce6770ff42618753e146ff115d 217 TIGRFAM TIGR03579 EF_0833: conserved hypothetical protein EF_0833/AHA_3914 8 216 6.9E-120 T 29-03-2018 IPR025456 Protein of unknown function DUF4310 AM354_RS16850 4d3c36ce6770ff42618753e146ff115d 217 Pfam PF14187 Domain of unknown function (DUF4310) 7 214 1.8E-106 T 29-03-2018 IPR025456 Protein of unknown function DUF4310 AM354_RS20080 73ac8bad88e8cdcb2100a0c50a249a81 401 Pfam PF00266 Aminotransferase class-V 21 388 1.4E-140 T 29-03-2018 IPR000192 Aminotransferase class V domain AM354_RS20080 73ac8bad88e8cdcb2100a0c50a249a81 401 TIGRFAM TIGR03392 FeS_syn_CsdA: cysteine desulfurase, catalytic subunit CsdA 4 401 2.5E-224 T 29-03-2018 IPR022471 Cysteine desulphurase, catalytic subunit, CsdA GO:0016226|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 AM354_RS20080 73ac8bad88e8cdcb2100a0c50a249a81 401 Gene3D G3DSA:3.40.640.10 31 278 4.4E-58 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS20080 73ac8bad88e8cdcb2100a0c50a249a81 401 SUPERFAMILY SSF53383 5 396 3.32E-114 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS20080 73ac8bad88e8cdcb2100a0c50a249a81 401 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 213 232 - T 29-03-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site AM354_RS20080 73ac8bad88e8cdcb2100a0c50a249a81 401 Gene3D G3DSA:3.90.1150.10 279 395 2.1E-39 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS10355 a4609899fdd6c7cb88c205ca22176e75 446 ProSitePatterns PS00217 Sugar transport proteins signature 2. 122 147 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM354_RS10355 a4609899fdd6c7cb88c205ca22176e75 446 SUPERFAMILY SSF103473 4 436 1.83E-81 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS10355 a4609899fdd6c7cb88c205ca22176e75 446 Gene3D G3DSA:1.20.1250.20 15 216 7.3E-37 T 29-03-2018 AM354_RS10355 a4609899fdd6c7cb88c205ca22176e75 446 Pfam PF07690 Major Facilitator Superfamily 31 307 3.2E-37 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS10355 a4609899fdd6c7cb88c205ca22176e75 446 ProSitePatterns PS00216 Sugar transport proteins signature 1. 80 96 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM354_RS10355 a4609899fdd6c7cb88c205ca22176e75 446 Gene3D G3DSA:1.20.1250.20 238 444 3.4E-26 T 29-03-2018 AM354_RS21440 157d5e1014ec5d55a74f16aa743ed5f7 70 TIGRFAM TIGR02419 C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger protein, TraR family 2 63 3.2E-17 T 29-03-2018 IPR012783 Zinc finger, C4 DksA/TraR-type AM354_RS21440 157d5e1014ec5d55a74f16aa743ed5f7 70 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 34 58 - T 29-03-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site AM354_RS21440 157d5e1014ec5d55a74f16aa743ed5f7 70 PRINTS PR00618 DksA/TraR zinc finger signature 34 45 1.3E-5 T 29-03-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria AM354_RS21440 157d5e1014ec5d55a74f16aa743ed5f7 70 PRINTS PR00618 DksA/TraR zinc finger signature 46 58 1.3E-5 T 29-03-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria AM354_RS21440 157d5e1014ec5d55a74f16aa743ed5f7 70 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 33 63 4.2E-12 T 29-03-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 AM354_RS21440 157d5e1014ec5d55a74f16aa743ed5f7 70 SUPERFAMILY SSF57716 34 68 1.71E-7 T 29-03-2018 AM354_RS18850 614ac7b27dabc55ff8223b89b9d6311f 96 TIGRFAM TIGR00251 TIGR00251: TIGR00251 family protein 6 88 9.1E-28 T 29-03-2018 IPR005228 Conserved hypothetical protein CHP00251 AM354_RS18850 614ac7b27dabc55ff8223b89b9d6311f 96 Gene3D G3DSA:3.30.1200.10 1 96 5.8E-31 T 29-03-2018 IPR003746 Protein of unknown function DUF167 AM354_RS18850 614ac7b27dabc55ff8223b89b9d6311f 96 SUPERFAMILY SSF69786 9 95 1.83E-31 T 29-03-2018 IPR003746 Protein of unknown function DUF167 AM354_RS18850 614ac7b27dabc55ff8223b89b9d6311f 96 SMART SM01152 7 83 6.3E-38 T 29-03-2018 IPR003746 Protein of unknown function DUF167 AM354_RS18850 614ac7b27dabc55ff8223b89b9d6311f 96 Hamap MF_00634 UPF0235 protein YggU [yggU]. 7 93 20.209 T 29-03-2018 IPR003746 Protein of unknown function DUF167 AM354_RS18850 614ac7b27dabc55ff8223b89b9d6311f 96 Pfam PF02594 Uncharacterised ACR, YggU family COG1872 11 81 2.3E-26 T 29-03-2018 IPR003746 Protein of unknown function DUF167 AM354_RS21025 e3e6140cadfd4b8dcbcff9a040729e82 599 PRINTS PR00315 GTP-binding elongation factor signature 90 101 4.0E-14 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS21025 e3e6140cadfd4b8dcbcff9a040729e82 599 PRINTS PR00315 GTP-binding elongation factor signature 126 135 4.0E-14 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS21025 e3e6140cadfd4b8dcbcff9a040729e82 599 PRINTS PR00315 GTP-binding elongation factor signature 6 19 4.0E-14 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS21025 e3e6140cadfd4b8dcbcff9a040729e82 599 PRINTS PR00315 GTP-binding elongation factor signature 74 84 4.0E-14 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS21025 e3e6140cadfd4b8dcbcff9a040729e82 599 PRINTS PR00315 GTP-binding elongation factor signature 49 57 4.0E-14 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS21025 e3e6140cadfd4b8dcbcff9a040729e82 599 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 170 6.8E-16 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AM354_RS21025 e3e6140cadfd4b8dcbcff9a040729e82 599 Pfam PF06421 GTP-binding protein LepA C-terminus 487 592 8.6E-49 T 29-03-2018 IPR013842 GTP-binding protein LepA, C-terminal AM354_RS21025 e3e6140cadfd4b8dcbcff9a040729e82 599 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 42 57 - T 29-03-2018 IPR031157 Tr-type G domain, conserved site AM354_RS21025 e3e6140cadfd4b8dcbcff9a040729e82 599 Hamap MF_00071 Elongation factor 4 [lepA]. 1 597 307.708 T 29-03-2018 IPR006297 Elongation factor 4 GO:0005525 AM354_RS21025 e3e6140cadfd4b8dcbcff9a040729e82 599 Gene3D G3DSA:2.40.30.10 188 287 2.2E-26 T 29-03-2018 AM354_RS21025 e3e6140cadfd4b8dcbcff9a040729e82 599 SUPERFAMILY SSF52540 2 235 1.93E-56 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS21025 e3e6140cadfd4b8dcbcff9a040729e82 599 Pfam PF03144 Elongation factor Tu domain 2 205 275 1.3E-11 T 29-03-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AM354_RS21025 e3e6140cadfd4b8dcbcff9a040729e82 599 TIGRFAM TIGR01393 lepA: elongation factor 4 2 594 5.2E-301 T 29-03-2018 IPR006297 Elongation factor 4 GO:0005525 AM354_RS21025 e3e6140cadfd4b8dcbcff9a040729e82 599 SUPERFAMILY SSF54980 399 493 9.59E-25 T 29-03-2018 IPR035647 EF-G domain III/V-like AM354_RS21025 e3e6140cadfd4b8dcbcff9a040729e82 599 Gene3D G3DSA:3.30.70.870 288 367 3.2E-27 T 29-03-2018 AM354_RS21025 e3e6140cadfd4b8dcbcff9a040729e82 599 SUPERFAMILY SSF54980 292 370 3.02E-18 T 29-03-2018 IPR035647 EF-G domain III/V-like AM354_RS21025 e3e6140cadfd4b8dcbcff9a040729e82 599 Gene3D G3DSA:3.30.70.240 390 549 2.9E-26 T 29-03-2018 AM354_RS21025 e3e6140cadfd4b8dcbcff9a040729e82 599 Pfam PF00009 Elongation factor Tu GTP binding domain 2 181 2.2E-51 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS21025 e3e6140cadfd4b8dcbcff9a040729e82 599 Pfam PF00679 Elongation factor G C-terminus 399 482 8.0E-20 T 29-03-2018 IPR000640 Elongation factor EFG, domain V-like AM354_RS21025 e3e6140cadfd4b8dcbcff9a040729e82 599 Gene3D G3DSA:3.40.50.300 1 185 1.4E-35 T 29-03-2018 AM354_RS09385 24e052c5f9e9b782a2fd4196120db952 593 ProSitePatterns PS00211 ABC transporters family signature. 467 481 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS09385 24e052c5f9e9b782a2fd4196120db952 593 SMART SM00382 356 550 1.4E-16 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS09385 24e052c5f9e9b782a2fd4196120db952 593 Pfam PF00005 ABC transporter 347 494 7.0E-30 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS09385 24e052c5f9e9b782a2fd4196120db952 593 TIGRFAM TIGR01842 type_I_sec_PrtD: type I secretion system ATPase 14 556 7.2E-230 T 29-03-2018 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 AM354_RS09385 24e052c5f9e9b782a2fd4196120db952 593 SUPERFAMILY SSF90123 10 316 2.35E-42 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM354_RS09385 24e052c5f9e9b782a2fd4196120db952 593 SUPERFAMILY SSF52540 322 555 3.98E-63 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS09385 24e052c5f9e9b782a2fd4196120db952 593 Pfam PF00664 ABC transporter transmembrane region 24 281 9.5E-13 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM354_RS09385 24e052c5f9e9b782a2fd4196120db952 593 Gene3D G3DSA:1.20.1560.10 2 316 1.2E-20 T 29-03-2018 AM354_RS09385 24e052c5f9e9b782a2fd4196120db952 593 Gene3D G3DSA:3.40.50.300 327 567 3.7E-63 T 29-03-2018 AM354_RS00740 24dbf68a17f762e74317420dd48603fe 449 Pfam PF16928 DNA/protein translocase of phage P22 injectosome 11 205 7.6E-61 T 29-03-2018 IPR031619 DNA transfer protein AM354_RS02710 8117813de74ca7c03bae83e4b40919e4 495 SUPERFAMILY SSF103473 8 198 3.92E-68 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS02710 8117813de74ca7c03bae83e4b40919e4 495 SUPERFAMILY SSF103473 456 486 3.92E-68 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS02710 8117813de74ca7c03bae83e4b40919e4 495 SUPERFAMILY SSF103473 246 417 3.92E-68 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS02710 8117813de74ca7c03bae83e4b40919e4 495 Gene3D G3DSA:1.20.1250.20 250 495 1.0E-27 T 29-03-2018 AM354_RS02710 8117813de74ca7c03bae83e4b40919e4 495 Gene3D G3DSA:1.20.1250.20 10 203 1.8E-36 T 29-03-2018 AM354_RS02710 8117813de74ca7c03bae83e4b40919e4 495 Pfam PF07690 Major Facilitator Superfamily 21 407 3.9E-52 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS02710 8117813de74ca7c03bae83e4b40919e4 495 PRINTS PR01036 Tetracycline resistance protein TetB signature 139 163 1.3E-7 T 29-03-2018 AM354_RS02710 8117813de74ca7c03bae83e4b40919e4 495 PRINTS PR01036 Tetracycline resistance protein TetB signature 265 290 1.3E-7 T 29-03-2018 AM354_RS02710 8117813de74ca7c03bae83e4b40919e4 495 PRINTS PR01036 Tetracycline resistance protein TetB signature 398 417 1.3E-7 T 29-03-2018 AM354_RS02710 8117813de74ca7c03bae83e4b40919e4 495 PRINTS PR01036 Tetracycline resistance protein TetB signature 78 100 1.3E-7 T 29-03-2018 AM354_RS13815 b2bef0548cf82191ea5f7712369e113c 142 Gene3D G3DSA:2.60.40.790 24 134 2.3E-19 T 29-03-2018 IPR008978 HSP20-like chaperone AM354_RS13815 b2bef0548cf82191ea5f7712369e113c 142 SUPERFAMILY SSF49764 29 133 8.02E-19 T 29-03-2018 IPR008978 HSP20-like chaperone AM354_RS13815 b2bef0548cf82191ea5f7712369e113c 142 Pfam PF00011 Hsp20/alpha crystallin family 38 133 7.0E-16 T 29-03-2018 IPR002068 Alpha crystallin/Hsp20 domain AM354_RS11145 d2018f4b0692527b6de8ac480890924d 94 Pfam PF07256 Protein of unknown function (DUF1435) 17 91 3.8E-35 T 29-03-2018 IPR009885 Protein of unknown function DUF1435 AM354_RS11145 d2018f4b0692527b6de8ac480890924d 94 ProDom PD058594 MEMBRANE INNER C5447 MAJOR ECS5328 THE SUPERFAMILY PERMEASES STY4905 YJJZ 22 92 2.0E-12 T 29-03-2018 IPR009885 Protein of unknown function DUF1435 AM354_RS04195 82cc9c42f39187bce9148a3652a616d4 150 SUPERFAMILY SSF55729 8 140 6.42E-29 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS04195 82cc9c42f39187bce9148a3652a616d4 150 Gene3D G3DSA:3.40.630.30 4 146 4.1E-24 T 29-03-2018 AM354_RS04195 82cc9c42f39187bce9148a3652a616d4 150 Pfam PF00583 Acetyltransferase (GNAT) family 42 140 6.2E-13 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS22015 c70e5f3614d88fbb59a4c42afe771964 402 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 156 174 2.7E-10 T 29-03-2018 AM354_RS22015 c70e5f3614d88fbb59a4c42afe771964 402 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 2.7E-10 T 29-03-2018 AM354_RS22015 c70e5f3614d88fbb59a4c42afe771964 402 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 103 121 2.7E-10 T 29-03-2018 AM354_RS22015 c70e5f3614d88fbb59a4c42afe771964 402 Gene3D G3DSA:3.50.50.60 1 129 3.2E-12 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS22015 c70e5f3614d88fbb59a4c42afe771964 402 SUPERFAMILY SSF51905 2 209 1.13E-23 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS22015 c70e5f3614d88fbb59a4c42afe771964 402 Gene3D G3DSA:3.40.50.720 165 388 3.7E-26 T 29-03-2018 AM354_RS22015 c70e5f3614d88fbb59a4c42afe771964 402 SUPERFAMILY SSF51905 150 330 4.98E-22 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS22015 c70e5f3614d88fbb59a4c42afe771964 402 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 314 5.0E-39 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS22015 c70e5f3614d88fbb59a4c42afe771964 402 Gene3D G3DSA:3.50.50.60 130 164 0.033 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS13085 ed12020eb29f7e94595b6b00c1761772 118 Pfam PF10694 Protein of unknown function (DUF2500) 5 114 1.7E-29 T 29-03-2018 IPR019635 Protein of unknown function DUF2500 AM354_RS16680 fbe4d8d6174a9c7b0a8a15f4244c4861 333 SUPERFAMILY SSF56524 75 329 7.98E-93 T 29-03-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 AM354_RS16680 fbe4d8d6174a9c7b0a8a15f4244c4861 333 Gene3D G3DSA:3.90.420.10 63 333 4.6E-62 T 29-03-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 AM354_RS16680 fbe4d8d6174a9c7b0a8a15f4244c4861 333 Hamap MF_01206 Protein-methionine-sulfoxide reductase catalytic subunit MsrP [msrP]. 5 333 55.549 T 29-03-2018 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP GO:0016667|GO:0030091|GO:0043546|GO:0055114 AM354_RS16680 fbe4d8d6174a9c7b0a8a15f4244c4861 333 Pfam PF00174 Oxidoreductase molybdopterin binding domain 107 266 2.6E-28 T 29-03-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 AM354_RS24680 9eeccfb8db7675a602625740e32d2d8c 263 SUPERFAMILY SSF52096 2 262 4.69E-86 T 29-03-2018 IPR029045 ClpP/crotonase-like domain AM354_RS24680 9eeccfb8db7675a602625740e32d2d8c 263 Gene3D G3DSA:3.90.226.10 1 223 2.7E-69 T 29-03-2018 AM354_RS24680 9eeccfb8db7675a602625740e32d2d8c 263 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 262 6.3E-67 T 29-03-2018 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AM354_RS24680 9eeccfb8db7675a602625740e32d2d8c 263 TIGRFAM TIGR02280 PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB 6 263 2.0E-131 T 29-03-2018 IPR011968 Phenylacetate degradation probable enoyl-CoA hydratase PaaB GO:0010124 KEGG: 00360+5.3.3.18 AM354_RS24680 9eeccfb8db7675a602625740e32d2d8c 263 Gene3D G3DSA:1.10.12.10 224 263 1.8E-13 T 29-03-2018 IPR014748 Crontonase, C-terminal AM354_RS14560 2941f34e4bfc0c7651f2a1396205909b 161 Gene3D G3DSA:3.50.30.40 1 159 3.7E-35 T 29-03-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein AM354_RS14560 2941f34e4bfc0c7651f2a1396205909b 161 Pfam PF03737 Aldolase/RraA 5 152 3.3E-35 T 29-03-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein AM354_RS14560 2941f34e4bfc0c7651f2a1396205909b 161 Hamap MF_00471 Regulator of ribonuclease activity A [rraA]. 1 161 46.723 T 29-03-2018 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria GO:0008428|GO:0051252 AM354_RS14560 2941f34e4bfc0c7651f2a1396205909b 161 TIGRFAM TIGR02998 RraA_entero: regulator of ribonuclease activity A 1 161 2.7E-87 T 29-03-2018 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria GO:0008428|GO:0051252 AM354_RS14560 2941f34e4bfc0c7651f2a1396205909b 161 TIGRFAM TIGR01935 NOT-MenG: RraA family 5 154 1.9E-61 T 29-03-2018 IPR010203 Regulator of ribonuclease activity A GO:0008428|GO:0051252 AM354_RS14560 2941f34e4bfc0c7651f2a1396205909b 161 SUPERFAMILY SSF89562 2 158 1.57E-43 T 29-03-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein AM354_RS10215 cfa0b56b2f77fc119f39f0b44d0893fd 297 SUPERFAMILY SSF53850 91 294 5.07E-40 T 29-03-2018 AM354_RS10215 cfa0b56b2f77fc119f39f0b44d0893fd 297 SUPERFAMILY SSF46785 5 90 4.0E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS10215 cfa0b56b2f77fc119f39f0b44d0893fd 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 65 1.5E-19 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS10215 cfa0b56b2f77fc119f39f0b44d0893fd 297 Gene3D G3DSA:1.10.10.10 5 95 4.2E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS10215 cfa0b56b2f77fc119f39f0b44d0893fd 297 Pfam PF03466 LysR substrate binding domain 90 294 2.9E-36 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS10215 cfa0b56b2f77fc119f39f0b44d0893fd 297 Gene3D G3DSA:3.40.190.10 96 179 1.7E-14 T 29-03-2018 AM354_RS10215 cfa0b56b2f77fc119f39f0b44d0893fd 297 Gene3D G3DSA:3.40.190.10 180 268 1.6E-29 T 29-03-2018 AM354_RS20720 fd9b67019f7c5dc869c5cfe0cc43b9b4 219 Gene3D G3DSA:3.40.50.150 50 198 4.3E-25 T 29-03-2018 AM354_RS20720 fd9b67019f7c5dc869c5cfe0cc43b9b4 219 SUPERFAMILY SSF53335 41 191 2.36E-28 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS20720 fd9b67019f7c5dc869c5cfe0cc43b9b4 219 Pfam PF13578 Methyltransferase domain 82 185 5.9E-16 T 29-03-2018 AM354_RS11425 0112659ce077eb3a7754e3b26d5cd20f 273 Pfam PF12833 Helix-turn-helix domain 181 258 3.2E-21 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS11425 0112659ce077eb3a7754e3b26d5cd20f 273 SUPERFAMILY SSF51182 18 186 8.45E-14 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS11425 0112659ce077eb3a7754e3b26d5cd20f 273 SUPERFAMILY SSF46689 214 258 1.43E-6 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS11425 0112659ce077eb3a7754e3b26d5cd20f 273 SMART SM00342 175 257 7.1E-20 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS11425 0112659ce077eb3a7754e3b26d5cd20f 273 Gene3D G3DSA:1.10.10.60 166 214 5.2E-9 T 29-03-2018 AM354_RS11425 0112659ce077eb3a7754e3b26d5cd20f 273 Gene3D G3DSA:2.60.120.10 7 165 2.6E-8 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS11425 0112659ce077eb3a7754e3b26d5cd20f 273 Pfam PF02311 AraC-like ligand binding domain 29 82 2.3E-6 T 29-03-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AM354_RS11425 0112659ce077eb3a7754e3b26d5cd20f 273 Gene3D G3DSA:1.10.10.60 215 263 1.4E-8 T 29-03-2018 AM354_RS01220 609b40490e8a5d94aa89d14dcbccb908 335 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 94 109 - T 29-03-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AM354_RS01220 609b40490e8a5d94aa89d14dcbccb908 335 Pfam PF00158 Sigma-54 interaction domain 9 170 4.7E-61 T 29-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AM354_RS01220 609b40490e8a5d94aa89d14dcbccb908 335 SMART SM00382 28 171 1.0E-10 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS01220 609b40490e8a5d94aa89d14dcbccb908 335 TIGRFAM TIGR02974 phageshock_pspF: psp operon transcriptional activator 8 324 4.5E-161 T 29-03-2018 IPR014317 Transcription activator PspF AM354_RS01220 609b40490e8a5d94aa89d14dcbccb908 335 Gene3D G3DSA:3.40.50.300 1 179 9.9E-29 T 29-03-2018 AM354_RS01220 609b40490e8a5d94aa89d14dcbccb908 335 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 222 231 - T 29-03-2018 IPR025944 Sigma-54 interaction domain, conserved site AM354_RS01220 609b40490e8a5d94aa89d14dcbccb908 335 Gene3D G3DSA:1.10.8.60 181 238 3.7E-18 T 29-03-2018 AM354_RS01220 609b40490e8a5d94aa89d14dcbccb908 335 SUPERFAMILY SSF46689 222 325 2.28E-6 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS01220 609b40490e8a5d94aa89d14dcbccb908 335 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 307 327 7.7E-7 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AM354_RS01220 609b40490e8a5d94aa89d14dcbccb908 335 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 290 307 7.7E-7 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AM354_RS01220 609b40490e8a5d94aa89d14dcbccb908 335 SUPERFAMILY SSF52540 8 243 3.1E-64 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS01220 609b40490e8a5d94aa89d14dcbccb908 335 Gene3D G3DSA:1.10.10.60 239 326 8.7E-8 T 29-03-2018 AM354_RS01220 609b40490e8a5d94aa89d14dcbccb908 335 Pfam PF02954 Bacterial regulatory protein, Fis family 286 323 1.3E-7 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AM354_RS16900 bfcea2b3266cf2260a1a042a02afcff3 148 SUPERFAMILY SSF55804 1 148 3.53E-42 T 29-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 AM354_RS16900 bfcea2b3266cf2260a1a042a02afcff3 148 TIGRFAM TIGR01419 nitro_reg_IIA: PTS IIA-like nitrogen-regulatory protein PtsN 2 148 7.0E-61 T 29-03-2018 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN GO:0008982|GO:0009401 AM354_RS16900 bfcea2b3266cf2260a1a042a02afcff3 148 Gene3D G3DSA:3.40.930.10 1 148 8.0E-38 T 29-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 AM354_RS16900 bfcea2b3266cf2260a1a042a02afcff3 148 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 51 67 - T 29-03-2018 IPR002178 PTS EIIA type-2 domain AM354_RS16900 bfcea2b3266cf2260a1a042a02afcff3 148 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 6 147 8.7E-37 T 29-03-2018 IPR002178 PTS EIIA type-2 domain AM354_RS23625 b5aa585c2b70533a401d64d23de9da61 386 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 11 182 3.5E-68 T 29-03-2018 IPR005126 NapC/NirT cytochrome c, N-terminal AM354_RS23625 b5aa585c2b70533a401d64d23de9da61 386 Gene3D G3DSA:1.10.760.10 315 386 0.36 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS23625 b5aa585c2b70533a401d64d23de9da61 386 Gene3D G3DSA:1.10.3820.10 5 191 7.7E-27 T 29-03-2018 AM354_RS23625 b5aa585c2b70533a401d64d23de9da61 386 SUPERFAMILY SSF46626 323 374 8.48E-5 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS23625 b5aa585c2b70533a401d64d23de9da61 386 PIRSF PIRSF000014 2 382 1.4E-144 T 29-03-2018 IPR009154 Membrane-bound tetrahaem cytochrome TorC/YecK GO:0005506|GO:0009055|GO:0009276|GO:0016021|GO:0020037 AM354_RS23625 b5aa585c2b70533a401d64d23de9da61 386 SUPERFAMILY SSF48695 14 184 4.32E-50 T 29-03-2018 IPR011031 Multihaem cytochrome AM354_RS00220 bb372ddf491b46e193840e2986277e3a 105 SUPERFAMILY SSF54909 1 83 5.37E-12 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel AM354_RS00220 bb372ddf491b46e193840e2986277e3a 105 Gene3D G3DSA:3.30.70.100 1 95 7.1E-16 T 29-03-2018 AM354_RS00220 bb372ddf491b46e193840e2986277e3a 105 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 63 2.1E-8 T 29-03-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain AM354_RS19990 93721104844c664e58a1de6f8b68729a 290 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 142 154 - T 29-03-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 AM354_RS19990 93721104844c664e58a1de6f8b68729a 290 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 13 279 1.1E-79 T 29-03-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 AM354_RS19990 93721104844c664e58a1de6f8b68729a 290 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 10 284 20.587 T 29-03-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 AM354_RS19990 93721104844c664e58a1de6f8b68729a 290 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 1 287 8.1E-106 T 29-03-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 AM354_RS10795 c0890ae58ccae31170dddaedd509f13d 617 Pfam PF00999 Sodium/hydrogen exchanger family 12 375 4.3E-63 T 29-03-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AM354_RS10795 c0890ae58ccae31170dddaedd509f13d 617 Gene3D G3DSA:3.40.50.720 397 562 7.7E-26 T 29-03-2018 AM354_RS10795 c0890ae58ccae31170dddaedd509f13d 617 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 15 286 7.3E-89 T 29-03-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 AM354_RS10795 c0890ae58ccae31170dddaedd509f13d 617 Pfam PF02254 TrkA-N domain 403 513 7.2E-25 T 29-03-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 AM354_RS10795 c0890ae58ccae31170dddaedd509f13d 617 Hamap MF_01413 Glutathione-regulated potassium-efflux system protein KefC [kefC]. 1 608 55.264 T 29-03-2018 IPR023941 Glutathione-regulated potassium-efflux system protein KefC GO:0005887|GO:0006813|GO:0015503|GO:0015643|GO:0019899|GO:0051595 AM354_RS10795 c0890ae58ccae31170dddaedd509f13d 617 SUPERFAMILY SSF51735 402 530 2.61E-33 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS10795 c0890ae58ccae31170dddaedd509f13d 617 Gene3D G3DSA:1.20.91.10 233 311 8.3E-11 T 29-03-2018 AM354_RS19995 47d26a27c41b3dce202aa9ac86dda6ad 264 Hamap MF_00008 Thymidylate synthase [thyA]. 1 264 39.672 T 29-03-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AM354_RS19995 47d26a27c41b3dce202aa9ac86dda6ad 264 ProSitePatterns PS00091 Thymidylate synthase active site. 126 154 - T 29-03-2018 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AM354_RS19995 47d26a27c41b3dce202aa9ac86dda6ad 264 SUPERFAMILY SSF55831 1 264 1.16E-131 T 29-03-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AM354_RS19995 47d26a27c41b3dce202aa9ac86dda6ad 264 Pfam PF00303 Thymidylate synthase 2 264 3.5E-127 T 29-03-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AM354_RS19995 47d26a27c41b3dce202aa9ac86dda6ad 264 Gene3D G3DSA:3.30.572.10 1 264 1.2E-133 T 29-03-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AM354_RS19995 47d26a27c41b3dce202aa9ac86dda6ad 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 84 264 3.8E-94 T 29-03-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AM354_RS19995 47d26a27c41b3dce202aa9ac86dda6ad 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 2 85 2.2E-41 T 29-03-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AM354_RS19995 47d26a27c41b3dce202aa9ac86dda6ad 264 PRINTS PR00108 Thymidylate synthase family signature 197 214 4.7E-47 T 29-03-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AM354_RS19995 47d26a27c41b3dce202aa9ac86dda6ad 264 PRINTS PR00108 Thymidylate synthase family signature 159 185 4.7E-47 T 29-03-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AM354_RS19995 47d26a27c41b3dce202aa9ac86dda6ad 264 PRINTS PR00108 Thymidylate synthase family signature 141 156 4.7E-47 T 29-03-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AM354_RS19995 47d26a27c41b3dce202aa9ac86dda6ad 264 PRINTS PR00108 Thymidylate synthase family signature 42 63 4.7E-47 T 29-03-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AM354_RS19995 47d26a27c41b3dce202aa9ac86dda6ad 264 PRINTS PR00108 Thymidylate synthase family signature 115 134 4.7E-47 T 29-03-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AM354_RS02925 320342c54f1904e00f046aaf611950b8 213 TIGRFAM TIGR01083 nth: endonuclease III 3 194 3.3E-88 T 29-03-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 AM354_RS02925 320342c54f1904e00f046aaf611950b8 213 SUPERFAMILY SSF48150 2 207 1.43E-72 T 29-03-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 AM354_RS02925 320342c54f1904e00f046aaf611950b8 213 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 187 203 - T 29-03-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 AM354_RS02925 320342c54f1904e00f046aaf611950b8 213 ProSitePatterns PS01155 Endonuclease III family signature. 102 131 - T 29-03-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 AM354_RS02925 320342c54f1904e00f046aaf611950b8 213 SMART SM00525 186 206 1.4E-5 T 29-03-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 AM354_RS02925 320342c54f1904e00f046aaf611950b8 213 Hamap MF_00942 Endonuclease III [nth]. 1 209 36.604 T 29-03-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 AM354_RS02925 320342c54f1904e00f046aaf611950b8 213 Pfam PF00633 Helix-hairpin-helix motif 100 127 3.4E-7 T 29-03-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 AM354_RS02925 320342c54f1904e00f046aaf611950b8 213 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 34 168 1.1E-18 T 29-03-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AM354_RS02925 320342c54f1904e00f046aaf611950b8 213 Gene3D G3DSA:1.10.340.30 21 117 1.6E-23 T 29-03-2018 AM354_RS02925 320342c54f1904e00f046aaf611950b8 213 SMART SM00478 38 185 4.9E-52 T 29-03-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AM354_RS02925 320342c54f1904e00f046aaf611950b8 213 Gene3D G3DSA:1.10.1670.10 118 213 8.9E-30 T 29-03-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 AM354_RS02925 320342c54f1904e00f046aaf611950b8 213 PIRSF PIRSF001435 1 210 2.8E-49 T 29-03-2018 AM354_RS02925 320342c54f1904e00f046aaf611950b8 213 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 187 203 1.1E-4 T 29-03-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 AM354_RS25905 e597c7fc784428322aa38ed327dc408a 100 Gene3D G3DSA:3.30.2120.10 1 95 6.9E-5 T 29-03-2018 AM354_RS25905 e597c7fc784428322aa38ed327dc408a 100 Pfam PF10765 Protein of unknown function (DUF2591) 29 97 1.9E-13 T 29-03-2018 IPR019701 Bacteriophage P22, NinX AM354_RS08535 43f2cfb896678094f344d6afd3105d3d 70 Gene3D G3DSA:3.10.290.10 1 69 4.5E-13 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM354_RS08535 43f2cfb896678094f344d6afd3105d3d 70 Pfam PF13275 S4 domain 9 68 1.7E-24 T 29-03-2018 AM354_RS08535 43f2cfb896678094f344d6afd3105d3d 70 SUPERFAMILY SSF55174 7 68 7.2E-20 T 29-03-2018 AM354_RS19715 0beafd4eb9252c14a6521697285291a9 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 59 2.7E-11 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS19715 0beafd4eb9252c14a6521697285291a9 198 ProSitePatterns PS01081 TetR-type HTH domain signature. 26 57 - T 29-03-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AM354_RS19715 0beafd4eb9252c14a6521697285291a9 198 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 85 187 1.0E-27 T 29-03-2018 AM354_RS19715 0beafd4eb9252c14a6521697285291a9 198 Gene3D G3DSA:1.10.260.40 44 65 2.3E-9 T 29-03-2018 AM354_RS19715 0beafd4eb9252c14a6521697285291a9 198 Hamap MF_00768 HTH-type transcriptional regulator BetI [betI]. 1 197 85.732 T 29-03-2018 IPR017757 Transcriptional repressor BetI AM354_RS19715 0beafd4eb9252c14a6521697285291a9 198 SUPERFAMILY SSF48498 85 187 4.89E-16 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AM354_RS19715 0beafd4eb9252c14a6521697285291a9 198 SUPERFAMILY SSF46689 2 79 7.7E-17 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS19715 0beafd4eb9252c14a6521697285291a9 198 Gene3D G3DSA:1.10.10.60 8 43 6.7E-13 T 29-03-2018 AM354_RS19715 0beafd4eb9252c14a6521697285291a9 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 14 27 5.0E-5 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS19715 0beafd4eb9252c14a6521697285291a9 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 58 5.0E-5 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS19715 0beafd4eb9252c14a6521697285291a9 198 TIGRFAM TIGR03384 betaine_BetI: transcriptional repressor BetI 5 190 1.9E-67 T 29-03-2018 IPR017757 Transcriptional repressor BetI AM354_RS19715 0beafd4eb9252c14a6521697285291a9 198 Gene3D G3DSA:1.10.357.10 66 196 7.0E-16 T 29-03-2018 AM354_RS07330 cafb4d90600eed079e81cb08501c8204 394 Gene3D G3DSA:1.20.1250.20 201 387 2.9E-10 T 29-03-2018 AM354_RS07330 cafb4d90600eed079e81cb08501c8204 394 Pfam PF07690 Major Facilitator Superfamily 22 353 7.0E-29 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS07330 cafb4d90600eed079e81cb08501c8204 394 Gene3D G3DSA:1.20.1250.20 9 200 2.3E-24 T 29-03-2018 AM354_RS07330 cafb4d90600eed079e81cb08501c8204 394 SUPERFAMILY SSF103473 7 384 1.57E-48 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS21760 21522c2929652a0200202970181e2df9 326 TIGRFAM TIGR00825 EIIBC-GUT: PTS system, glucitol/sorbitol-specific, IIBC component 4 326 9.2E-180 T 29-03-2018 IPR004702 Phosphotransferease, sorbitol phosphotransferase enzyme II GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.198|KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 AM354_RS21760 21522c2929652a0200202970181e2df9 326 Pfam PF03612 Sorbitol phosphotransferase enzyme II N-terminus 5 178 4.0E-70 T 29-03-2018 IPR011618 Sorbitol phosphotransferase enzyme II, N-terminal GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.198|KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 AM354_RS21760 21522c2929652a0200202970181e2df9 326 Pfam PF07663 Sorbitol phosphotransferase enzyme II C-terminus 233 325 1.2E-41 T 29-03-2018 IPR011638 Sorbitol phosphotransferase enzyme II, C-terminal GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.198|KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 AM354_RS15370 b93f9137778b8c4804356b734c3b9a34 337 Gene3D G3DSA:3.40.50.720 1 136 5.4E-33 T 29-03-2018 AM354_RS15370 b93f9137778b8c4804356b734c3b9a34 337 Gene3D G3DSA:3.30.360.10 137 327 4.3E-27 T 29-03-2018 AM354_RS15370 b93f9137778b8c4804356b734c3b9a34 337 Hamap MF_01671 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase [iolG]. 1 336 51.77 T 29-03-2018 IPR023794 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase GO:0019310|GO:0050112|GO:0055114 KEGG: 00521+1.1.1.18|KEGG: 00562+1.1.1.18|MetaCyc: PWY-5940|MetaCyc: PWY-7237|MetaCyc: PWY-7241 AM354_RS15370 b93f9137778b8c4804356b734c3b9a34 337 SUPERFAMILY SSF51735 3 154 2.94E-40 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS15370 b93f9137778b8c4804356b734c3b9a34 337 SUPERFAMILY SSF55347 133 295 2.09E-16 T 29-03-2018 AM354_RS15370 b93f9137778b8c4804356b734c3b9a34 337 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 3 125 9.6E-25 T 29-03-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AM354_RS15370 b93f9137778b8c4804356b734c3b9a34 337 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 138 239 3.3E-8 T 29-03-2018 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 AM354_RS21195 0139ccbd7dd812f11e6bddb1142e2c1a 381 Pfam PF12832 MFS_1 like family 8 357 3.0E-49 T 29-03-2018 IPR024989 Major facilitator superfamily associated domain AM354_RS21195 0139ccbd7dd812f11e6bddb1142e2c1a 381 SUPERFAMILY SSF103473 7 372 1.11E-37 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS21195 0139ccbd7dd812f11e6bddb1142e2c1a 381 Gene3D G3DSA:1.20.1250.20 4 191 1.3E-10 T 29-03-2018 AM354_RS21195 0139ccbd7dd812f11e6bddb1142e2c1a 381 Gene3D G3DSA:1.20.1250.20 192 373 2.1E-15 T 29-03-2018 AM354_RS21195 0139ccbd7dd812f11e6bddb1142e2c1a 381 PIRSF PIRSF004925 1 381 7.9E-113 T 29-03-2018 IPR026032 Probable 3-phenylpropionic acid transporter AM354_RS01025 5a70a00f1d5258e2e2f6f97bb1be2c4a 573 PIRSF PIRSF029745 10 573 4.3E-145 T 29-03-2018 IPR027282 Two partner secretion pathway transporter GO:0015031 AM354_RS01025 5a70a00f1d5258e2e2f6f97bb1be2c4a 573 Gene3D G3DSA:2.40.160.50 191 572 2.3E-48 T 29-03-2018 AM354_RS01025 5a70a00f1d5258e2e2f6f97bb1be2c4a 573 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 223 536 8.8E-101 T 29-03-2018 IPR005565 Haemolysin activator HlyB, C-terminal AM354_RS01025 5a70a00f1d5258e2e2f6f97bb1be2c4a 573 Pfam PF08479 POTRA domain, ShlB-type 88 163 6.9E-16 T 29-03-2018 IPR013686 Polypeptide-transport-associated, ShlB-type AM354_RS01025 5a70a00f1d5258e2e2f6f97bb1be2c4a 573 Pfam PF17287 POTRA domain 164 218 1.5E-18 T 29-03-2018 IPR035251 ShlB, POTRA domain AM354_RS01025 5a70a00f1d5258e2e2f6f97bb1be2c4a 573 Gene3D G3DSA:3.10.20.310 95 163 1.3E-8 T 29-03-2018 AM354_RS21880 68f5c2e1c67e9471b2cac1265d691c0d 516 SUPERFAMILY SSF53067 138 311 3.19E-47 T 29-03-2018 AM354_RS21880 68f5c2e1c67e9471b2cac1265d691c0d 516 PIRSF PIRSF001267 4 507 2.5E-202 T 29-03-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 AM354_RS21880 68f5c2e1c67e9471b2cac1265d691c0d 516 Gene3D G3DSA:3.30.420.150 127 306 2.7E-33 T 29-03-2018 AM354_RS21880 68f5c2e1c67e9471b2cac1265d691c0d 516 Gene3D G3DSA:3.30.420.40 3 126 2.1E-38 T 29-03-2018 AM354_RS21880 68f5c2e1c67e9471b2cac1265d691c0d 516 SUPERFAMILY SSF53067 14 134 2.69E-36 T 29-03-2018 AM354_RS21880 68f5c2e1c67e9471b2cac1265d691c0d 516 SUPERFAMILY SSF109604 314 507 6.91E-55 T 29-03-2018 AM354_RS21880 68f5c2e1c67e9471b2cac1265d691c0d 516 Pfam PF02541 Ppx/GppA phosphatase family 27 309 2.4E-97 T 29-03-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 AM354_RS21880 68f5c2e1c67e9471b2cac1265d691c0d 516 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 13 307 3.5E-98 T 29-03-2018 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 AM354_RS25505 eabb439b534fdc2d5fc46df26a2c47fd 169 TIGRFAM TIGR03823 FliZ: flagellar regulatory protein FliZ 1 167 4.0E-92 T 29-03-2018 IPR022523 Flagellar regulator, FliZ AM354_RS25505 eabb439b534fdc2d5fc46df26a2c47fd 169 Gene3D G3DSA:1.10.150.130 10 132 0.0014 T 29-03-2018 IPR023109 Integrase/recombinase, N-terminal AM354_RS25505 eabb439b534fdc2d5fc46df26a2c47fd 169 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 91 166 7.4E-7 T 29-03-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 AM354_RS20345 d26eccf77fb5ce61c055a05740d86f36 271 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 14 271 7.4E-147 T 29-03-2018 IPR004872 Lipoprotein NlpA family AM354_RS20345 d26eccf77fb5ce61c055a05740d86f36 271 Pfam PF03180 NLPA lipoprotein 33 271 8.1E-101 T 29-03-2018 IPR004872 Lipoprotein NlpA family AM354_RS20345 d26eccf77fb5ce61c055a05740d86f36 271 Gene3D G3DSA:3.40.190.10 32 127 1.6E-21 T 29-03-2018 AM354_RS20345 d26eccf77fb5ce61c055a05740d86f36 271 SUPERFAMILY SSF53850 33 271 2.41E-84 T 29-03-2018 AM354_RS20345 d26eccf77fb5ce61c055a05740d86f36 271 PIRSF PIRSF002854 1 271 2.2E-106 T 29-03-2018 IPR004872 Lipoprotein NlpA family AM354_RS20345 d26eccf77fb5ce61c055a05740d86f36 271 Gene3D G3DSA:3.40.190.10 128 271 2.4E-50 T 29-03-2018 AM354_RS25010 3c64c949288cb4242ee5888a674aeff7 481 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 29 52 - T 29-03-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 AM354_RS25010 3c64c949288cb4242ee5888a674aeff7 481 SUPERFAMILY SSF56112 17 304 1.71E-47 T 29-03-2018 IPR011009 Protein kinase-like domain AM354_RS25010 3c64c949288cb4242ee5888a674aeff7 481 Pfam PF00069 Protein kinase domain 23 286 4.8E-26 T 29-03-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AM354_RS25010 3c64c949288cb4242ee5888a674aeff7 481 Gene3D G3DSA:1.10.510.10 131 395 1.3E-25 T 29-03-2018 AM354_RS25010 3c64c949288cb4242ee5888a674aeff7 481 Gene3D G3DSA:3.30.200.20 18 130 4.7E-18 T 29-03-2018 AM354_RS05730 8ab108bd915df3c22e8b2fec7eb6e44d 448 Gene3D G3DSA:3.40.50.300 3 154 4.9E-30 T 29-03-2018 AM354_RS05730 8ab108bd915df3c22e8b2fec7eb6e44d 448 Pfam PF12002 MgsA AAA+ ATPase C terminal 269 435 1.9E-65 T 29-03-2018 IPR021886 MgsA AAA+ ATPase C-terminal AM354_RS05730 8ab108bd915df3c22e8b2fec7eb6e44d 448 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 54 160 4.5E-15 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AM354_RS05730 8ab108bd915df3c22e8b2fec7eb6e44d 448 Gene3D G3DSA:1.10.3710.10 349 448 4.1E-33 T 29-03-2018 AM354_RS05730 8ab108bd915df3c22e8b2fec7eb6e44d 448 SMART SM00382 50 166 2.8E-17 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS05730 8ab108bd915df3c22e8b2fec7eb6e44d 448 Gene3D G3DSA:1.20.272.10 253 347 6.0E-37 T 29-03-2018 AM354_RS05730 8ab108bd915df3c22e8b2fec7eb6e44d 448 Pfam PF16193 AAA C-terminal domain 188 268 9.3E-23 T 29-03-2018 IPR032423 AAA C-terminal domain AM354_RS05730 8ab108bd915df3c22e8b2fec7eb6e44d 448 Gene3D G3DSA:1.10.8.60 155 244 8.2E-19 T 29-03-2018 AM354_RS05730 8ab108bd915df3c22e8b2fec7eb6e44d 448 SUPERFAMILY SSF48019 253 435 1.28E-71 T 29-03-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 AM354_RS05730 8ab108bd915df3c22e8b2fec7eb6e44d 448 SUPERFAMILY SSF52540 7 239 2.06E-44 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS18795 06c65d3ba2f295c6c4c07c0cc7f60d45 721 Gene3D G3DSA:3.40.640.10 110 419 8.3E-36 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS18795 06c65d3ba2f295c6c4c07c0cc7f60d45 721 Gene3D G3DSA:3.40.50.220 3 109 4.0E-31 T 29-03-2018 IPR027464 Ornithine decarboxylase, N-terminal domain KEGG: 00330+4.1.1.17|KEGG: 00480+4.1.1.17|MetaCyc: PWY-46|MetaCyc: PWY-6305 AM354_RS18795 06c65d3ba2f295c6c4c07c0cc7f60d45 721 Gene3D G3DSA:3.90.100.10 602 721 2.7E-36 T 29-03-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 AM354_RS18795 06c65d3ba2f295c6c4c07c0cc7f60d45 721 TIGRFAM TIGR04301 ODC_inducible: ornithine decarboxylase SpeF 1 720 0.0 T 29-03-2018 IPR027568 Ornithine decarboxylase SpeF GO:0004586 KEGG: 00330+4.1.1.17|KEGG: 00480+4.1.1.17|MetaCyc: PWY-46|MetaCyc: PWY-6305 AM354_RS18795 06c65d3ba2f295c6c4c07c0cc7f60d45 721 PIRSF PIRSF009393 1 721 2.0E-289 T 29-03-2018 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 AM354_RS18795 06c65d3ba2f295c6c4c07c0cc7f60d45 721 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 577 706 2.5E-47 T 29-03-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 AM354_RS18795 06c65d3ba2f295c6c4c07c0cc7f60d45 721 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 110 550 8.3E-194 T 29-03-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 AM354_RS18795 06c65d3ba2f295c6c4c07c0cc7f60d45 721 SUPERFAMILY SSF53383 110 565 1.82E-119 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS18795 06c65d3ba2f295c6c4c07c0cc7f60d45 721 Gene3D G3DSA:3.90.1150.10 422 601 7.0E-52 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS18795 06c65d3ba2f295c6c4c07c0cc7f60d45 721 SUPERFAMILY SSF55904 572 720 7.45E-47 T 29-03-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 AM354_RS18795 06c65d3ba2f295c6c4c07c0cc7f60d45 721 SUPERFAMILY SSF52172 1 109 6.46E-31 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS18795 06c65d3ba2f295c6c4c07c0cc7f60d45 721 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 351 365 - T 29-03-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 AM354_RS18795 06c65d3ba2f295c6c4c07c0cc7f60d45 721 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 4 104 2.0E-19 T 29-03-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 AM354_RS25830 b5b6a03983b4ca6065a6c1f4594da6c9 327 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 45 319 5.5E-62 T 29-03-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0008152|GO:0016788 AM354_RS25830 b5b6a03983b4ca6065a6c1f4594da6c9 327 SUPERFAMILY SSF53187 1 318 9.26E-86 T 29-03-2018 AM354_RS25830 b5b6a03983b4ca6065a6c1f4594da6c9 327 Hamap MF_00767 Succinylglutamate desuccinylase [astE]. 1 327 143.954 T 29-03-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 AM354_RS25830 b5b6a03983b4ca6065a6c1f4594da6c9 327 Gene3D G3DSA:3.40.630.10 35 296 4.5E-29 T 29-03-2018 AM354_RS25830 b5b6a03983b4ca6065a6c1f4594da6c9 327 TIGRFAM TIGR03242 arg_catab_astE: succinylglutamate desuccinylase 3 318 4.0E-132 T 29-03-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 AM354_RS25830 b5b6a03983b4ca6065a6c1f4594da6c9 327 PIRSF PIRSF017020 1 326 5.6E-116 T 29-03-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 AM354_RS13255 4d1a0ee0a53f353224cd63786d49d072 106 Gene3D G3DSA:3.30.920.10 1 106 8.0E-33 T 29-03-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AM354_RS13255 4d1a0ee0a53f353224cd63786d49d072 106 SMART SM01219 1 106 2.8E-58 T 29-03-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AM354_RS13255 4d1a0ee0a53f353224cd63786d49d072 106 Pfam PF01491 Frataxin-like domain 1 102 1.2E-29 T 29-03-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AM354_RS13255 4d1a0ee0a53f353224cd63786d49d072 106 TIGRFAM TIGR03421 FeS_CyaY: iron donor protein CyaY 2 105 2.0E-43 T 29-03-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AM354_RS13255 4d1a0ee0a53f353224cd63786d49d072 106 Hamap MF_00142 Protein CyaY [cyaY]. 1 105 29.843 T 29-03-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AM354_RS13255 4d1a0ee0a53f353224cd63786d49d072 106 SUPERFAMILY SSF55387 1 105 2.44E-39 T 29-03-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AM354_RS13255 4d1a0ee0a53f353224cd63786d49d072 106 ProSitePatterns PS01344 Frataxin family signature. 50 64 - T 29-03-2018 IPR020895 Frataxin conserved site Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AM354_RS00705 9a2e2ec71c802908c82aea73a60b3b25 303 Gene3D G3DSA:4.10.810.10 264 303 1.1E-21 T 29-03-2018 AM354_RS00705 9a2e2ec71c802908c82aea73a60b3b25 303 Pfam PF09306 Bacteriophage, scaffolding protein 1 301 7.7E-149 T 29-03-2018 IPR015385 Bacteriophage P22, Gp8, scaffold AM354_RS24475 5c5ab9c6d304af88efeb099706dbc8b3 320 Gene3D G3DSA:3.20.20.80 179 316 0.0017 T 29-03-2018 AM354_RS15375 3f3f996721be01fbfc039b874585f2aa 294 Pfam PF01261 Xylose isomerase-like TIM barrel 20 238 1.5E-34 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM354_RS15375 3f3f996721be01fbfc039b874585f2aa 294 Gene3D G3DSA:3.20.20.150 1 257 2.3E-34 T 29-03-2018 AM354_RS15375 3f3f996721be01fbfc039b874585f2aa 294 SUPERFAMILY SSF51658 1 253 2.63E-39 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM354_RS24725 9669cbda29430a031418358295f98e6b 517 Gene3D G3DSA:3.30.450.20 181 298 1.2E-10 T 29-03-2018 AM354_RS24725 9669cbda29430a031418358295f98e6b 517 SUPERFAMILY SSF55073 357 515 1.86E-45 T 29-03-2018 IPR029787 Nucleotide cyclase AM354_RS24725 9669cbda29430a031418358295f98e6b 517 Pfam PF00990 Diguanylate cyclase, GGDEF domain 352 512 2.3E-48 T 29-03-2018 IPR000160 GGDEF domain AM354_RS24725 9669cbda29430a031418358295f98e6b 517 SMART SM00267 341 517 8.1E-59 T 29-03-2018 IPR000160 GGDEF domain AM354_RS24725 9669cbda29430a031418358295f98e6b 517 Gene3D G3DSA:3.30.450.20 48 180 4.2E-17 T 29-03-2018 AM354_RS24725 9669cbda29430a031418358295f98e6b 517 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 348 515 1.6E-50 T 29-03-2018 IPR000160 GGDEF domain AM354_RS24725 9669cbda29430a031418358295f98e6b 517 Gene3D G3DSA:3.30.70.270 345 517 2.5E-50 T 29-03-2018 AM354_RS24725 9669cbda29430a031418358295f98e6b 517 Pfam PF02743 Cache domain 53 282 4.7E-19 T 29-03-2018 IPR033479 Double Cache domain 1 AM354_RS20320 06a1e5c74314914f9fe0dad38913df13 137 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 21 37 - T 29-03-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AM354_RS20320 06a1e5c74314914f9fe0dad38913df13 137 Pfam PF00472 RF-1 domain 7 129 7.1E-24 T 29-03-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AM354_RS20320 06a1e5c74314914f9fe0dad38913df13 137 Gene3D G3DSA:3.30.160.20 1 137 1.8E-39 T 29-03-2018 AM354_RS20320 06a1e5c74314914f9fe0dad38913df13 137 SUPERFAMILY SSF75620 6 113 8.24E-15 T 29-03-2018 AM354_RS19145 4dfb0c83b0f863db66659764b859c5eb 51 Pfam PF01848 Hok/gef family 8 47 7.8E-20 T 29-03-2018 IPR000021 Hok/gef cell toxic protein GO:0016020 AM354_RS19145 4dfb0c83b0f863db66659764b859c5eb 51 PRINTS PR00281 Hok/Gef cell toxic protein family signature 6 24 2.8E-13 T 29-03-2018 IPR000021 Hok/gef cell toxic protein GO:0016020 AM354_RS19145 4dfb0c83b0f863db66659764b859c5eb 51 PRINTS PR00281 Hok/Gef cell toxic protein family signature 26 48 2.8E-13 T 29-03-2018 IPR000021 Hok/gef cell toxic protein GO:0016020 AM354_RS19145 4dfb0c83b0f863db66659764b859c5eb 51 ProDom PD005979 PLASMID MEMBRANE TRANSMEMBRANE POST-SEGREGATION KILLING INHERITANCE ALTERING PERMEABILITY STABLE MAINTENANCE 2 49 6.0E-9 T 29-03-2018 IPR000021 Hok/gef cell toxic protein GO:0016020 AM354_RS19145 4dfb0c83b0f863db66659764b859c5eb 51 ProSitePatterns PS00556 Hok/gef family cell toxic proteins signature. 11 30 - T 29-03-2018 IPR018084 Hok/gef cell toxic protein, conserved site GO:0016020 AM354_RS01575 ab32abd85706b2c66db6cfecc6812e32 383 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 29 45 6.9E-6 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AM354_RS01575 ab32abd85706b2c66db6cfecc6812e32 383 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 260 278 6.9E-6 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AM354_RS01575 ab32abd85706b2c66db6cfecc6812e32 383 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 94 104 6.9E-6 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AM354_RS01575 ab32abd85706b2c66db6cfecc6812e32 383 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 336 351 6.9E-6 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AM354_RS01575 ab32abd85706b2c66db6cfecc6812e32 383 Gene3D G3DSA:3.40.50.2300 25 202 8.0E-35 T 29-03-2018 AM354_RS01575 ab32abd85706b2c66db6cfecc6812e32 383 SUPERFAMILY SSF53822 27 373 3.26E-88 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS01575 ab32abd85706b2c66db6cfecc6812e32 383 Pfam PF13458 Periplasmic binding protein 28 370 1.1E-62 T 29-03-2018 IPR028081 Leucine-binding protein domain AM354_RS01575 ab32abd85706b2c66db6cfecc6812e32 383 Gene3D G3DSA:3.40.50.2300 203 359 2.0E-22 T 29-03-2018 AM354_RS08285 f7a2b707d58eef871e924791a3677506 157 Pfam PF02130 Uncharacterized protein family UPF0054 21 143 1.2E-39 T 29-03-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 AM354_RS08285 f7a2b707d58eef871e924791a3677506 157 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 40 144 3.5E-37 T 29-03-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 AM354_RS08285 f7a2b707d58eef871e924791a3677506 157 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 5 148 24.987 T 29-03-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 AM354_RS08285 f7a2b707d58eef871e924791a3677506 157 SUPERFAMILY SSF55486 3 150 3.66E-50 T 29-03-2018 AM354_RS08285 f7a2b707d58eef871e924791a3677506 157 Gene3D G3DSA:3.40.390.30 1 155 3.5E-55 T 29-03-2018 IPR023091 Metalloprotease catalytic domain, predicted GO:0004222 AM354_RS08285 f7a2b707d58eef871e924791a3677506 157 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 114 124 - T 29-03-2018 IPR020549 Endoribonuclease YbeY, conserved site AM354_RS14375 fa8b7a94a6006909174dd725de58fa40 318 SUPERFAMILY SSF88713 29 232 4.17E-10 T 29-03-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AM354_RS14375 fa8b7a94a6006909174dd725de58fa40 318 Gene3D G3DSA:3.20.20.370 1 317 1.7E-27 T 29-03-2018 AM354_RS00530 3e352dea21a810fdec3885eecb39f353 344 Pfam PF00107 Zinc-binding dehydrogenase 176 302 2.0E-18 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AM354_RS00530 3e352dea21a810fdec3885eecb39f353 344 SUPERFAMILY SSF51735 139 307 4.32E-35 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS00530 3e352dea21a810fdec3885eecb39f353 344 SUPERFAMILY SSF50129 1 174 3.65E-51 T 29-03-2018 IPR011032 GroES-like AM354_RS00530 3e352dea21a810fdec3885eecb39f353 344 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 135 2.0E-24 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AM354_RS00530 3e352dea21a810fdec3885eecb39f353 344 Gene3D G3DSA:3.90.180.10 1 158 2.0E-43 T 29-03-2018 AM354_RS00530 3e352dea21a810fdec3885eecb39f353 344 SMART SM00829 10 341 2.3E-5 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AM354_RS00530 3e352dea21a810fdec3885eecb39f353 344 Gene3D G3DSA:3.40.50.720 159 316 2.3E-23 T 29-03-2018 AM354_RS00530 3e352dea21a810fdec3885eecb39f353 344 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 62 76 - T 29-03-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AM354_RS06470 79f4e0438ab7a187f77963ae3bb841b8 306 SUPERFAMILY SSF53850 85 289 6.64E-36 T 29-03-2018 AM354_RS06470 79f4e0438ab7a187f77963ae3bb841b8 306 Pfam PF03466 LysR substrate binding domain 85 285 3.6E-37 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS06470 79f4e0438ab7a187f77963ae3bb841b8 306 SUPERFAMILY SSF46785 1 109 1.14E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS06470 79f4e0438ab7a187f77963ae3bb841b8 306 Gene3D G3DSA:3.40.190.10 182 258 2.6E-15 T 29-03-2018 AM354_RS06470 79f4e0438ab7a187f77963ae3bb841b8 306 Gene3D G3DSA:3.40.190.10 83 181 1.9E-15 T 29-03-2018 AM354_RS06470 79f4e0438ab7a187f77963ae3bb841b8 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 1.2E-17 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS06470 79f4e0438ab7a187f77963ae3bb841b8 306 Gene3D G3DSA:1.10.10.10 1 82 9.6E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS01615 638fb7c20e815628f4cc2301a357a534 301 Gene3D G3DSA:3.40.190.10 92 181 4.8E-19 T 29-03-2018 AM354_RS01615 638fb7c20e815628f4cc2301a357a534 301 Gene3D G3DSA:3.40.190.10 182 268 4.4E-21 T 29-03-2018 AM354_RS01615 638fb7c20e815628f4cc2301a357a534 301 SUPERFAMILY SSF46785 1 112 1.22E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS01615 638fb7c20e815628f4cc2301a357a534 301 SUPERFAMILY SSF53850 89 289 1.5E-36 T 29-03-2018 AM354_RS01615 638fb7c20e815628f4cc2301a357a534 301 Gene3D G3DSA:1.10.10.10 1 81 8.3E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS01615 638fb7c20e815628f4cc2301a357a534 301 Pfam PF03466 LysR substrate binding domain 88 290 3.3E-40 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS01615 638fb7c20e815628f4cc2301a357a534 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 6.7E-20 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS01615 638fb7c20e815628f4cc2301a357a534 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.2E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS01615 638fb7c20e815628f4cc2301a357a534 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.2E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS01615 638fb7c20e815628f4cc2301a357a534 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.2E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS05450 0f35136981e21af91d6a27d4af3bc52e 152 Pfam PF17414 MatP C-terminal ribbon-helix-helix domain 88 147 5.1E-31 T 29-03-2018 IPR035375 MatP, C-terminal ribbon-helix-helix domain AM354_RS05450 0f35136981e21af91d6a27d4af3bc52e 152 Pfam PF06303 MatP N-terminal domain 2 85 3.1E-45 T 29-03-2018 IPR035087 MatP, N-terminal AM354_RS05450 0f35136981e21af91d6a27d4af3bc52e 152 ProDom PD033720 UPF0268 YCBG DEHYDROGENASE PM0482 PBPRA1775 PLU1774 YPO1433/Y2737/YP0877 VV1664 HI1323 HD0178 1 131 6.0E-62 T 29-03-2018 IPR009390 Macrodomain Ter protein, MatP GO:0043565 AM354_RS05450 0f35136981e21af91d6a27d4af3bc52e 152 Gene3D G3DSA:1.10.3990.20 76 139 1.6E-5 T 29-03-2018 AM354_RS05450 0f35136981e21af91d6a27d4af3bc52e 152 Hamap MF_01073 Macrodomain Ter protein [matP]. 1 148 30.798 T 29-03-2018 IPR009390 Macrodomain Ter protein, MatP GO:0043565 AM354_RS17050 fe8850b33b477212d37e61648ff694c4 235 SUPERFAMILY SSF48317 37 231 8.63E-36 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM354_RS17050 fe8850b33b477212d37e61648ff694c4 235 Gene3D G3DSA:1.20.144.10 17 235 2.3E-36 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM354_RS17050 fe8850b33b477212d37e61648ff694c4 235 Pfam PF01569 PAP2 superfamily 122 214 1.3E-14 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM354_RS17050 fe8850b33b477212d37e61648ff694c4 235 PIRSF PIRSF000897 2 235 7.8E-54 T 29-03-2018 IPR011158 Nonspecific acid phosphatase, class A GO:0003993|GO:0030288 KEGG: 00740+3.1.3.2|MetaCyc: PWY-6348 AM354_RS17050 fe8850b33b477212d37e61648ff694c4 235 SMART SM00014 106 213 2.1E-6 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM354_RS23455 695bc8f2ba640acb350db67c62128ed2 399 Pfam PF13884 Chaperone of endosialidase 303 352 1.1E-15 T 29-03-2018 IPR030392 Intramolecular chaperone auto-processing domain AM354_RS23455 695bc8f2ba640acb350db67c62128ed2 399 Gene3D G3DSA:1.10.10.10 290 398 2.5E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS25930 1d5021f260a783fd26ca8ae6972b72e1 38 Pfam PF10736 Protein of unknown function (DUF2627) 1 38 3.9E-29 T 29-03-2018 IPR019672 Protein of unknown function DUF2627 AM354_RS13235 5ac964a31d978648fe2a32bf9f6cacb1 303 SUPERFAMILY SSF56349 113 296 1.03E-53 T 29-03-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AM354_RS13235 5ac964a31d978648fe2a32bf9f6cacb1 303 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 12 95 2.8E-20 T 29-03-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 AM354_RS13235 5ac964a31d978648fe2a32bf9f6cacb1 303 Pfam PF00589 Phage integrase family 117 284 2.5E-51 T 29-03-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM354_RS13235 5ac964a31d978648fe2a32bf9f6cacb1 303 TIGRFAM TIGR02224 recomb_XerC: tyrosine recombinase XerC 14 300 4.6E-107 T 29-03-2018 IPR011931 Tyrosine recombinase XerC GO:0003677|GO:0006310|GO:0007049|GO:0007059|GO:0015074|GO:0051301 AM354_RS13235 5ac964a31d978648fe2a32bf9f6cacb1 303 Gene3D G3DSA:1.10.150.130 4 116 1.1E-20 T 29-03-2018 IPR023109 Integrase/recombinase, N-terminal AM354_RS13235 5ac964a31d978648fe2a32bf9f6cacb1 303 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 10 298 55.858 T 29-03-2018 IPR023009 Tyrosine recombinase XerC/XerD AM354_RS13235 5ac964a31d978648fe2a32bf9f6cacb1 303 SUPERFAMILY SSF47823 11 103 1.41E-8 T 29-03-2018 IPR010998 Integrase, Lambda-type, N-terminal AM354_RS13235 5ac964a31d978648fe2a32bf9f6cacb1 303 Gene3D G3DSA:1.10.443.10 117 292 1.1E-43 T 29-03-2018 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM354_RS02145 41260a460c221d9068460ef5b4e1bd0c 135 SUPERFAMILY SSF102462 1 134 4.76E-46 T 29-03-2018 IPR023476 Peptidyl-tRNA hydrolase II domain MetaCyc: PWY-6308 AM354_RS02145 41260a460c221d9068460ef5b4e1bd0c 135 Pfam PF09391 Protein of unknown function (DUF2000) 4 134 9.5E-45 T 29-03-2018 IPR018988 Protein of unknown function DUF2000 AM354_RS02145 41260a460c221d9068460ef5b4e1bd0c 135 Gene3D G3DSA:3.40.1490.10 4 133 9.0E-45 T 29-03-2018 IPR023476 Peptidyl-tRNA hydrolase II domain MetaCyc: PWY-6308 AM354_RS08210 102ad89d66e7ea2cdbf0f70ff33ccf4c 379 Gene3D G3DSA:3.20.20.140 69 350 3.1E-95 T 29-03-2018 AM354_RS08210 102ad89d66e7ea2cdbf0f70ff33ccf4c 379 SUPERFAMILY SSF51556 54 350 6.81E-103 T 29-03-2018 IPR032466 Metal-dependent hydrolase AM354_RS08210 102ad89d66e7ea2cdbf0f70ff33ccf4c 379 PIRSF PIRSF038994 1 379 3.5E-116 T 29-03-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 AM354_RS08210 102ad89d66e7ea2cdbf0f70ff33ccf4c 379 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 1 377 3.9E-165 T 29-03-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 AM354_RS08210 102ad89d66e7ea2cdbf0f70ff33ccf4c 379 Pfam PF01979 Amidohydrolase family 50 379 4.4E-41 T 29-03-2018 IPR006680 Amidohydrolase-related GO:0016787 AM354_RS08210 102ad89d66e7ea2cdbf0f70ff33ccf4c 379 Gene3D G3DSA:2.30.40.10 2 68 1.0E-12 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM354_RS08210 102ad89d66e7ea2cdbf0f70ff33ccf4c 379 SUPERFAMILY SSF51338 1 53 2.33E-19 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM354_RS04555 dbbd45f52f18f1dc8d884ea29f8f9a95 537 SUPERFAMILY SSF55785 214 315 3.4E-5 T 29-03-2018 IPR000014 PAS domain AM354_RS04555 dbbd45f52f18f1dc8d884ea29f8f9a95 537 Pfam PF17203 Single cache domain 3 39 172 1.8E-18 T 29-03-2018 IPR033463 Single cache domain 3 AM354_RS04555 dbbd45f52f18f1dc8d884ea29f8f9a95 537 Gene3D G3DSA:3.30.565.10 394 534 4.6E-29 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS04555 dbbd45f52f18f1dc8d884ea29f8f9a95 537 PRINTS PR00344 Bacterial sensor protein C-terminal signature 491 509 2.3E-12 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS04555 dbbd45f52f18f1dc8d884ea29f8f9a95 537 PRINTS PR00344 Bacterial sensor protein C-terminal signature 462 476 2.3E-12 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS04555 dbbd45f52f18f1dc8d884ea29f8f9a95 537 PRINTS PR00344 Bacterial sensor protein C-terminal signature 515 528 2.3E-12 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS04555 dbbd45f52f18f1dc8d884ea29f8f9a95 537 PRINTS PR00344 Bacterial sensor protein C-terminal signature 480 490 2.3E-12 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS04555 dbbd45f52f18f1dc8d884ea29f8f9a95 537 SMART SM00387 423 531 1.6E-21 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS04555 dbbd45f52f18f1dc8d884ea29f8f9a95 537 Gene3D G3DSA:3.30.450.20 215 318 1.1E-10 T 29-03-2018 AM354_RS04555 dbbd45f52f18f1dc8d884ea29f8f9a95 537 SUPERFAMILY SSF55890 329 396 5.23E-14 T 29-03-2018 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 AM354_RS04555 dbbd45f52f18f1dc8d884ea29f8f9a95 537 Pfam PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain 327 377 2.3E-10 T 29-03-2018 AM354_RS04555 dbbd45f52f18f1dc8d884ea29f8f9a95 537 SUPERFAMILY SSF55874 423 528 2.75E-28 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS04555 dbbd45f52f18f1dc8d884ea29f8f9a95 537 Gene3D G3DSA:3.30.450.20 34 174 3.1E-28 T 29-03-2018 AM354_RS04555 dbbd45f52f18f1dc8d884ea29f8f9a95 537 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 428 529 7.4E-16 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS04555 dbbd45f52f18f1dc8d884ea29f8f9a95 537 Gene3D G3DSA:1.10.287.130 319 379 1.1E-14 T 29-03-2018 AM354_RS04555 dbbd45f52f18f1dc8d884ea29f8f9a95 537 SUPERFAMILY SSF103190 42 171 3.14E-37 T 29-03-2018 IPR029151 Periplasmic sensor domain-like AM354_RS14245 491511ca70ea2ef7b31ead163bfc6d1e 693 SMART SM00490 505 589 8.7E-23 T 29-03-2018 IPR001650 Helicase, C-terminal AM354_RS14245 491511ca70ea2ef7b31ead163bfc6d1e 693 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 28 664 2.2E-248 T 29-03-2018 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 AM354_RS14245 491511ca70ea2ef7b31ead163bfc6d1e 693 Gene3D G3DSA:1.10.150.20 3 51 2.0E-4 T 29-03-2018 AM354_RS14245 491511ca70ea2ef7b31ead163bfc6d1e 693 Pfam PF00271 Helicase conserved C-terminal domain 481 588 2.0E-18 T 29-03-2018 IPR001650 Helicase, C-terminal AM354_RS14245 491511ca70ea2ef7b31ead163bfc6d1e 693 Pfam PF00270 DEAD/DEAH box helicase 293 431 3.6E-19 T 29-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AM354_RS14245 491511ca70ea2ef7b31ead163bfc6d1e 693 Gene3D G3DSA:3.40.50.300 253 456 3.3E-35 T 29-03-2018 AM354_RS14245 491511ca70ea2ef7b31ead163bfc6d1e 693 SUPERFAMILY SSF50249 9 176 6.28E-45 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS14245 491511ca70ea2ef7b31ead163bfc6d1e 693 SUPERFAMILY SSF52540 207 453 4.05E-59 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS14245 491511ca70ea2ef7b31ead163bfc6d1e 693 Pfam PF17191 RecG wedge domain 14 171 1.4E-21 T 29-03-2018 IPR033454 RecG, wedge domain AM354_RS14245 491511ca70ea2ef7b31ead163bfc6d1e 693 Gene3D G3DSA:2.40.50.140 52 143 1.2E-13 T 29-03-2018 AM354_RS14245 491511ca70ea2ef7b31ead163bfc6d1e 693 Gene3D G3DSA:3.40.50.300 457 630 2.5E-28 T 29-03-2018 AM354_RS14245 491511ca70ea2ef7b31ead163bfc6d1e 693 SUPERFAMILY SSF52540 508 653 7.55E-46 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS14245 491511ca70ea2ef7b31ead163bfc6d1e 693 SUPERFAMILY SSF52540 292 342 7.55E-46 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS14245 491511ca70ea2ef7b31ead163bfc6d1e 693 SMART SM00487 265 459 1.6E-29 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AM354_RS10335 36a88c0e70aa8070d6a89d0dfa93a563 571 SUPERFAMILY SSF55124 346 423 4.58E-22 T 29-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM354_RS10335 36a88c0e70aa8070d6a89d0dfa93a563 571 PRINTS PR00397 Sirohaem Fe-binding site signature 478 496 1.4E-8 T 29-03-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM354_RS10335 36a88c0e70aa8070d6a89d0dfa93a563 571 PRINTS PR00397 Sirohaem Fe-binding site signature 430 448 1.4E-8 T 29-03-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM354_RS10335 36a88c0e70aa8070d6a89d0dfa93a563 571 SUPERFAMILY SSF56014 429 561 3.4E-35 T 29-03-2018 AM354_RS10335 36a88c0e70aa8070d6a89d0dfa93a563 571 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 478 494 - T 29-03-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM354_RS10335 36a88c0e70aa8070d6a89d0dfa93a563 571 TIGRFAM TIGR02041 CysI: sulfite reductase (NADPH) hemoprotein, beta-component 19 559 8.1E-293 T 29-03-2018 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM354_RS10335 36a88c0e70aa8070d6a89d0dfa93a563 571 Gene3D G3DSA:3.30.413.10 426 562 7.4E-25 T 29-03-2018 AM354_RS10335 36a88c0e70aa8070d6a89d0dfa93a563 571 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 355 416 1.3E-14 T 29-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM354_RS10335 36a88c0e70aa8070d6a89d0dfa93a563 571 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 80 139 6.0E-14 T 29-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM354_RS10335 36a88c0e70aa8070d6a89d0dfa93a563 571 Gene3D G3DSA:3.30.413.10 141 345 9.7E-46 T 29-03-2018 AM354_RS10335 36a88c0e70aa8070d6a89d0dfa93a563 571 Hamap MF_01540 Sulfite reductase [NADPH] hemoprotein beta-component [cysI]. 10 571 58.426 T 29-03-2018 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM354_RS10335 36a88c0e70aa8070d6a89d0dfa93a563 571 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 431 514 0.076 T 29-03-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM354_RS10335 36a88c0e70aa8070d6a89d0dfa93a563 571 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 173 329 1.5E-46 T 29-03-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM354_RS10335 36a88c0e70aa8070d6a89d0dfa93a563 571 SUPERFAMILY SSF56014 150 344 4.84E-59 T 29-03-2018 AM354_RS10335 36a88c0e70aa8070d6a89d0dfa93a563 571 SUPERFAMILY SSF55124 14 142 1.54E-26 T 29-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM354_RS09060 e7440525549d073cc10bea73384991d0 126 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 62 124 1.4E-27 T 29-03-2018 IPR004509 Competence protein ComEA, helix-hairpin-helix domain AM354_RS09060 e7440525549d073cc10bea73384991d0 126 Pfam PF12836 Helix-hairpin-helix motif 63 124 1.1E-21 T 29-03-2018 AM354_RS09060 e7440525549d073cc10bea73384991d0 126 SMART SM00278 74 93 220.0 T 29-03-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AM354_RS09060 e7440525549d073cc10bea73384991d0 126 SMART SM00278 104 123 1.6 T 29-03-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AM354_RS09060 e7440525549d073cc10bea73384991d0 126 Gene3D G3DSA:1.10.150.20 8 82 1.3E-6 T 29-03-2018 AM354_RS09060 e7440525549d073cc10bea73384991d0 126 SUPERFAMILY SSF47781 59 123 6.89E-25 T 29-03-2018 IPR010994 RuvA domain 2-like AM354_RS09060 e7440525549d073cc10bea73384991d0 126 Gene3D G3DSA:1.10.150.310 83 126 8.2E-16 T 29-03-2018 AM354_RS23675 04bb9b7c1d2f475e5e663cb819c7b4a3 492 PIRSF PIRSF006060 1 492 9.0E-81 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM354_RS23675 04bb9b7c1d2f475e5e663cb819c7b4a3 492 Pfam PF00324 Amino acid permease 24 477 4.0E-143 T 29-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 AM354_RS23675 04bb9b7c1d2f475e5e663cb819c7b4a3 492 ProSitePatterns PS00218 Amino acid permeases signature. 49 80 - T 29-03-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 AM354_RS05030 1ddf98424fea9865d62c421b94814320 573 Hamap MF_01075 K(+)/H(+) antiporter NhaP2 [nhaP2]. 1 573 50.415 T 29-03-2018 IPR023729 K(+)/H(+) antiporter NhaP2 GO:0005451|GO:0006812|GO:0006813|GO:0006884|GO:0016021 AM354_RS05030 1ddf98424fea9865d62c421b94814320 573 Pfam PF03471 Transporter associated domain 493 570 1.7E-14 T 29-03-2018 IPR005170 Transporter-associated domain AM354_RS05030 1ddf98424fea9865d62c421b94814320 573 Pfam PF02080 TrkA-C domain 421 477 8.3E-11 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM354_RS05030 1ddf98424fea9865d62c421b94814320 573 Gene3D G3DSA:3.30.465.10 491 571 7.4E-14 T 29-03-2018 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AM354_RS05030 1ddf98424fea9865d62c421b94814320 573 SUPERFAMILY SSF116726 414 483 1.57E-10 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM354_RS05030 1ddf98424fea9865d62c421b94814320 573 Gene3D G3DSA:3.30.70.1450 415 490 2.6E-11 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM354_RS05030 1ddf98424fea9865d62c421b94814320 573 SUPERFAMILY SSF56176 497 570 6.54E-13 T 29-03-2018 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AM354_RS05030 1ddf98424fea9865d62c421b94814320 573 SMART SM01091 492 572 4.7E-22 T 29-03-2018 IPR005170 Transporter-associated domain AM354_RS05030 1ddf98424fea9865d62c421b94814320 573 Pfam PF00999 Sodium/hydrogen exchanger family 15 388 3.8E-57 T 29-03-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AM354_RS07110 432bed31c8b6f738930d1dda24558c4e 170 Gene3D G3DSA:3.40.630.30 1 170 3.6E-30 T 29-03-2018 AM354_RS07110 432bed31c8b6f738930d1dda24558c4e 170 SUPERFAMILY SSF55729 1 152 1.48E-26 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS07110 432bed31c8b6f738930d1dda24558c4e 170 Pfam PF00583 Acetyltransferase (GNAT) family 38 145 2.2E-16 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS21075 f019f0524b5840a9146009378c499c37 455 SUPERFAMILY SSF55604 7 81 1.07E-16 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM354_RS21075 f019f0524b5840a9146009378c499c37 455 Gene3D G3DSA:3.30.1360.60 5 82 7.9E-24 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM354_RS21075 f019f0524b5840a9146009378c499c37 455 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 20 37 - T 29-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AM354_RS21075 f019f0524b5840a9146009378c499c37 455 Pfam PF02378 Phosphotransferase system, EIIC 119 393 8.6E-34 T 29-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AM354_RS21075 f019f0524b5840a9146009378c499c37 455 Pfam PF00367 phosphotransferase system, EIIB 10 40 7.0E-11 T 29-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AM354_RS10565 e5a9a983e559fef620f59b9496490d80 354 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 9 145 9.1E-49 T 29-03-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AM354_RS10565 e5a9a983e559fef620f59b9496490d80 354 Gene3D G3DSA:3.40.50.2000 179 347 6.4E-33 T 29-03-2018 AM354_RS10565 e5a9a983e559fef620f59b9496490d80 354 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 1 348 7.6E-115 T 29-03-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AM354_RS10565 e5a9a983e559fef620f59b9496490d80 354 SUPERFAMILY SSF53756 6 353 1.33E-130 T 29-03-2018 AM354_RS10565 e5a9a983e559fef620f59b9496490d80 354 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 8 353 35.371 T 29-03-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AM354_RS10565 e5a9a983e559fef620f59b9496490d80 354 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 185 344 5.1E-37 T 29-03-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193 AM354_RS10565 e5a9a983e559fef620f59b9496490d80 354 Gene3D G3DSA:3.40.50.2000 1 178 2.9E-46 T 29-03-2018 AM354_RS24410 0c0b71e71b7154e0bfd58e1c04024471 789 Pfam PF13360 PQQ-like domain 664 752 4.1E-5 T 29-03-2018 IPR002372 Pyrrolo-quinoline quinone repeat AM354_RS24410 0c0b71e71b7154e0bfd58e1c04024471 789 Pfam PF13360 PQQ-like domain 193 308 2.2E-6 T 29-03-2018 IPR002372 Pyrrolo-quinoline quinone repeat AM354_RS24410 0c0b71e71b7154e0bfd58e1c04024471 789 Gene3D G3DSA:2.140.10.10 706 778 2.2E-6 T 29-03-2018 AM354_RS24410 0c0b71e71b7154e0bfd58e1c04024471 789 Gene3D G3DSA:2.140.10.10 654 698 0.017 T 29-03-2018 AM354_RS24410 0c0b71e71b7154e0bfd58e1c04024471 789 SMART SM00564 338 379 7.3 T 29-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AM354_RS24410 0c0b71e71b7154e0bfd58e1c04024471 789 SMART SM00564 219 250 1.7E-4 T 29-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AM354_RS24410 0c0b71e71b7154e0bfd58e1c04024471 789 SMART SM00564 408 457 40.0 T 29-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AM354_RS24410 0c0b71e71b7154e0bfd58e1c04024471 789 SMART SM00564 709 742 0.0029 T 29-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AM354_RS24410 0c0b71e71b7154e0bfd58e1c04024471 789 SMART SM00564 282 313 130.0 T 29-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AM354_RS24410 0c0b71e71b7154e0bfd58e1c04024471 789 SMART SM00564 634 681 290.0 T 29-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AM354_RS24410 0c0b71e71b7154e0bfd58e1c04024471 789 TIGRFAM TIGR03074 PQQ_membr_DH: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family 18 787 0.0 T 29-03-2018 IPR017511 PQQ-dependent membrane bound dehydrogenase GO:0016021|GO:0016614|GO:0048038|GO:0055114 AM354_RS24410 0c0b71e71b7154e0bfd58e1c04024471 789 Pfam PF01011 PQQ enzyme repeat 442 467 6.2E-7 T 29-03-2018 IPR002372 Pyrrolo-quinoline quinone repeat AM354_RS24410 0c0b71e71b7154e0bfd58e1c04024471 789 Gene3D G3DSA:2.140.10.10 158 611 3.9E-88 T 29-03-2018 AM354_RS24410 0c0b71e71b7154e0bfd58e1c04024471 789 ProSitePatterns PS00364 Bacterial quinoprotein dehydrogenases signature 2. 403 424 - T 29-03-2018 IPR001479 Quinoprotein dehydrogenase, conserved site GO:0030288|GO:0055114 AM354_RS24410 0c0b71e71b7154e0bfd58e1c04024471 789 SUPERFAMILY SSF50998 164 521 1.31E-151 T 29-03-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily AM354_RS24410 0c0b71e71b7154e0bfd58e1c04024471 789 SUPERFAMILY SSF50998 558 777 1.31E-151 T 29-03-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily AM354_RS03305 e5355cf30fd90e29dfb07ac3fbe1e12b 480 Hamap MF_00692 UPF0061 protein YdiU [ydiU]. 1 466 45.288 T 29-03-2018 IPR003846 Uncharacterised protein family UPF0061 AM354_RS03305 e5355cf30fd90e29dfb07ac3fbe1e12b 480 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 4 449 3.0E-155 T 29-03-2018 IPR003846 Uncharacterised protein family UPF0061 AM354_RS12000 acd4e913d9585057fa436ba413e3abd6 152 Pfam PF17384 RimP C-terminal SH3 domain 87 152 2.4E-22 T 29-03-2018 IPR028998 Ribosome maturation factor RimP, C-terminal AM354_RS12000 acd4e913d9585057fa436ba413e3abd6 152 SUPERFAMILY SSF75420 4 84 1.09E-24 T 29-03-2018 IPR028989 Ribosome maturation factor RimP, N-terminal AM354_RS12000 acd4e913d9585057fa436ba413e3abd6 152 Pfam PF02576 RimP N-terminal domain 14 84 4.4E-29 T 29-03-2018 IPR028989 Ribosome maturation factor RimP, N-terminal AM354_RS12000 acd4e913d9585057fa436ba413e3abd6 152 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 8 152 24.458 T 29-03-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 AM354_RS12000 acd4e913d9585057fa436ba413e3abd6 152 SUPERFAMILY SSF74942 85 152 1.57E-16 T 29-03-2018 IPR028998 Ribosome maturation factor RimP, C-terminal AM354_RS12000 acd4e913d9585057fa436ba413e3abd6 152 Gene3D G3DSA:3.30.300.70 2 81 8.9E-28 T 29-03-2018 IPR028989 Ribosome maturation factor RimP, N-terminal AM354_RS12000 acd4e913d9585057fa436ba413e3abd6 152 Gene3D G3DSA:2.30.30.180 89 149 1.4E-17 T 29-03-2018 IPR028998 Ribosome maturation factor RimP, C-terminal AM354_RS02375 117e09fc0d1df0143a107dfb59ed8e84 385 Gene3D G3DSA:3.40.710.10 3 381 4.7E-84 T 29-03-2018 AM354_RS02375 117e09fc0d1df0143a107dfb59ed8e84 385 Pfam PF00144 Beta-lactamase 13 363 9.2E-66 T 29-03-2018 IPR001466 Beta-lactamase-related AM354_RS02375 117e09fc0d1df0143a107dfb59ed8e84 385 SUPERFAMILY SSF56601 7 379 5.47E-89 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM354_RS01120 24b9cb05d56e46a825473da9258e8b4b 436 ProSitePatterns PS00217 Sugar transport proteins signature 2. 134 159 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM354_RS01120 24b9cb05d56e46a825473da9258e8b4b 436 Pfam PF07690 Major Facilitator Superfamily 29 363 2.1E-24 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS01120 24b9cb05d56e46a825473da9258e8b4b 436 Gene3D G3DSA:1.20.1250.20 234 436 4.3E-17 T 29-03-2018 AM354_RS01120 24b9cb05d56e46a825473da9258e8b4b 436 Gene3D G3DSA:1.20.1250.20 17 233 1.2E-23 T 29-03-2018 AM354_RS01120 24b9cb05d56e46a825473da9258e8b4b 436 SUPERFAMILY SSF103473 21 435 8.63E-58 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS19440 eeaf7dc754bb4c2d917aa254cb02f9b8 192 TIGRFAM TIGR02292 ygfB_yecA: yecA family protein 16 166 9.0E-14 T 29-03-2018 IPR011978 Uncharacterised protein family UPF0149 AM354_RS19440 eeaf7dc754bb4c2d917aa254cb02f9b8 192 SUPERFAMILY SSF101327 8 176 5.62E-51 T 29-03-2018 IPR011978 Uncharacterised protein family UPF0149 AM354_RS19440 eeaf7dc754bb4c2d917aa254cb02f9b8 192 Hamap MF_00346 UPF0149 protein YgfB [ygfB]. 6 190 36.586 T 29-03-2018 IPR011978 Uncharacterised protein family UPF0149 AM354_RS19440 eeaf7dc754bb4c2d917aa254cb02f9b8 192 Pfam PF03695 Uncharacterised protein family (UPF0149) 13 177 5.2E-38 T 29-03-2018 IPR011978 Uncharacterised protein family UPF0149 AM354_RS13220 456a4830d2755821fef8fb2135db067c 157 SUPERFAMILY SSF51182 28 120 6.37E-15 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS13220 456a4830d2755821fef8fb2135db067c 157 Gene3D G3DSA:2.60.120.10 3 137 2.6E-15 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS13220 456a4830d2755821fef8fb2135db067c 157 TIGRFAM TIGR04366 cupin_WbuC: cupin fold metalloprotein, WbuC family 4 132 3.6E-45 T 29-03-2018 IPR027565 Cupin fold metalloprotein, WbuC family AM354_RS16020 932ab6a0c8856c7aab5f4364f66e334a 274 Gene3D G3DSA:2.30.30.30 119 195 1.0E-30 T 29-03-2018 IPR014722 Ribosomal protein L2 domain 2 AM354_RS16020 932ab6a0c8856c7aab5f4364f66e334a 274 SMART SM01382 124 251 9.7E-89 T 29-03-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 AM354_RS16020 932ab6a0c8856c7aab5f4364f66e334a 274 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 125 249 7.2E-55 T 29-03-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 AM354_RS16020 932ab6a0c8856c7aab5f4364f66e334a 274 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 3.9E-34 T 29-03-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS16020 932ab6a0c8856c7aab5f4364f66e334a 274 SUPERFAMILY SSF50104 127 269 2.71E-59 T 29-03-2018 IPR008991 Translation protein SH3-like domain AM354_RS16020 932ab6a0c8856c7aab5f4364f66e334a 274 SMART SM01383 42 118 3.6E-48 T 29-03-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS16020 932ab6a0c8856c7aab5f4364f66e334a 274 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 272 2.8E-131 T 29-03-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 AM354_RS16020 932ab6a0c8856c7aab5f4364f66e334a 274 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 29-03-2018 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16020 932ab6a0c8856c7aab5f4364f66e334a 274 Gene3D G3DSA:4.10.950.10 197 272 3.3E-35 T 29-03-2018 IPR014726 Ribosomal protein L2, domain 3 AM354_RS16020 932ab6a0c8856c7aab5f4364f66e334a 274 SUPERFAMILY SSF50249 2 125 1.1E-50 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS16020 932ab6a0c8856c7aab5f4364f66e334a 274 Gene3D G3DSA:2.40.50.140 1 114 1.1E-48 T 29-03-2018 AM354_RS16020 932ab6a0c8856c7aab5f4364f66e334a 274 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 272 47.181 T 29-03-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 AM354_RS16020 932ab6a0c8856c7aab5f4364f66e334a 274 PIRSF PIRSF002158 12 274 2.3E-99 T 29-03-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS14330 03ffe2b4e7ddad27f8ef8fdb5ae1e84f 55 SUPERFAMILY SSF57829 1 53 4.39E-20 T 29-03-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 AM354_RS14330 03ffe2b4e7ddad27f8ef8fdb5ae1e84f 55 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 5 53 15.87 T 29-03-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS14330 03ffe2b4e7ddad27f8ef8fdb5ae1e84f 55 ProSitePatterns PS00582 Ribosomal protein L33 signature. 21 40 - T 29-03-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS14330 03ffe2b4e7ddad27f8ef8fdb5ae1e84f 55 Pfam PF00471 Ribosomal protein L33 7 53 1.2E-18 T 29-03-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS14330 03ffe2b4e7ddad27f8ef8fdb5ae1e84f 55 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 55 2.6E-27 T 29-03-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS00300 b37546e1c9b997c49449eed12f29034a 331 PIRSF PIRSF000149 1 331 1.4E-135 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS00300 b37546e1c9b997c49449eed12f29034a 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 268 283 2.9E-47 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS00300 b37546e1c9b997c49449eed12f29034a 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 144 162 2.9E-47 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS00300 b37546e1c9b997c49449eed12f29034a 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 171 187 2.9E-47 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS00300 b37546e1c9b997c49449eed12f29034a 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 109 122 2.9E-47 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS00300 b37546e1c9b997c49449eed12f29034a 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 228 245 2.9E-47 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS00300 b37546e1c9b997c49449eed12f29034a 331 SMART SM00846 3 150 5.7E-96 T 29-03-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS00300 b37546e1c9b997c49449eed12f29034a 331 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 155 312 1.6E-71 T 29-03-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS00300 b37546e1c9b997c49449eed12f29034a 331 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 148 155 - T 29-03-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS00300 b37546e1c9b997c49449eed12f29034a 331 Gene3D G3DSA:3.40.50.720 1 159 8.3E-79 T 29-03-2018 AM354_RS00300 b37546e1c9b997c49449eed12f29034a 331 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 102 1.4E-41 T 29-03-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS00300 b37546e1c9b997c49449eed12f29034a 331 SUPERFAMILY SSF51735 3 166 1.3E-67 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS00300 b37546e1c9b997c49449eed12f29034a 331 SUPERFAMILY SSF55347 149 312 3.12E-81 T 29-03-2018 AM354_RS00300 b37546e1c9b997c49449eed12f29034a 331 Gene3D G3DSA:3.30.360.10 160 314 4.8E-81 T 29-03-2018 AM354_RS00300 b37546e1c9b997c49449eed12f29034a 331 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 324 1.2E-134 T 29-03-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS04655 65054492ba032d85c2d122e5775d4635 245 SMART SM00481 4 78 1.1E-16 T 29-03-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal AM354_RS04655 65054492ba032d85c2d122e5775d4635 245 Pfam PF02811 PHP domain 5 110 1.2E-7 T 29-03-2018 IPR004013 PHP domain GO:0003824 AM354_RS04655 65054492ba032d85c2d122e5775d4635 245 SUPERFAMILY SSF89550 3 241 1.83E-63 T 29-03-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 AM354_RS04655 65054492ba032d85c2d122e5775d4635 245 Hamap MF_01561 Probable phosphatase YcdX [ycdX]. 1 243 49.776 T 29-03-2018 IPR023710 Probable phosphatase YcdX GO:0008270 AM354_RS04655 65054492ba032d85c2d122e5775d4635 245 Gene3D G3DSA:3.20.20.140 1 245 1.5E-37 T 29-03-2018 AM354_RS10570 619b8927a9b9a1d13ad93a981717ef04 400 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 33 388 1.4E-134 T 29-03-2018 IPR013437 Cell division protein FtsW GO:0009252|GO:0016021|GO:0051301 AM354_RS10570 619b8927a9b9a1d13ad93a981717ef04 400 Pfam PF01098 Cell cycle protein 35 390 2.2E-124 T 29-03-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 AM354_RS10570 619b8927a9b9a1d13ad93a981717ef04 400 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 347 371 - T 29-03-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0007049|GO:0016021 AM354_RS10570 619b8927a9b9a1d13ad93a981717ef04 400 Hamap MF_00913 Putative lipid II flippase FtsW [ftsW]. 31 398 41.883 T 29-03-2018 IPR013437 Cell division protein FtsW GO:0009252|GO:0016021|GO:0051301 AM354_RS04250 2f6eb47a3ce3f69ffe30e3964ac4d604 260 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 75 253 5.3E-19 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS04250 2f6eb47a3ce3f69ffe30e3964ac4d604 260 SUPERFAMILY SSF161098 3 254 1.68E-56 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS04250 2f6eb47a3ce3f69ffe30e3964ac4d604 260 Gene3D G3DSA:1.10.3720.10 5 260 8.8E-41 T 29-03-2018 AM354_RS02760 d816cc05312b85c4cc421a3a0fca52a1 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 2.8E-22 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS02760 d816cc05312b85c4cc421a3a0fca52a1 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 6.9E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS02760 d816cc05312b85c4cc421a3a0fca52a1 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 6.9E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS02760 d816cc05312b85c4cc421a3a0fca52a1 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 6.9E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS02760 d816cc05312b85c4cc421a3a0fca52a1 296 Gene3D G3DSA:3.40.190.10 90 179 6.3E-18 T 29-03-2018 AM354_RS02760 d816cc05312b85c4cc421a3a0fca52a1 296 Pfam PF03466 LysR substrate binding domain 90 294 1.9E-45 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS02760 d816cc05312b85c4cc421a3a0fca52a1 296 Gene3D G3DSA:3.40.190.10 180 272 3.7E-26 T 29-03-2018 AM354_RS02760 d816cc05312b85c4cc421a3a0fca52a1 296 SUPERFAMILY SSF46785 4 88 3.41E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS02760 d816cc05312b85c4cc421a3a0fca52a1 296 Gene3D G3DSA:1.10.10.10 1 85 1.2E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS02760 d816cc05312b85c4cc421a3a0fca52a1 296 SUPERFAMILY SSF53850 93 295 1.45E-40 T 29-03-2018 AM354_RS19475 18a4c39f0eeebb1d0f144cc5835622f1 321 SUPERFAMILY SSF51735 102 287 1.92E-21 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS19475 18a4c39f0eeebb1d0f144cc5835622f1 321 Gene3D G3DSA:3.40.50.720 126 305 1.1E-22 T 29-03-2018 AM354_RS19475 18a4c39f0eeebb1d0f144cc5835622f1 321 Gene3D G3DSA:3.90.180.10 1 125 1.8E-15 T 29-03-2018 AM354_RS19475 18a4c39f0eeebb1d0f144cc5835622f1 321 SMART SM00829 10 291 0.0066 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AM354_RS19475 18a4c39f0eeebb1d0f144cc5835622f1 321 SUPERFAMILY SSF50129 1 136 7.51E-18 T 29-03-2018 IPR011032 GroES-like AM354_RS22260 20d86f91af1f8c31f42af63b7116ad71 141 SUPERFAMILY SSF55729 1 129 4.76E-31 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS22260 20d86f91af1f8c31f42af63b7116ad71 141 Gene3D G3DSA:3.40.630.30 1 141 8.3E-36 T 29-03-2018 AM354_RS22260 20d86f91af1f8c31f42af63b7116ad71 141 PIRSF PIRSF037663 1 136 2.5E-12 T 29-03-2018 IPR017255 Acetyltransferase, GNAT, predicted AM354_RS22260 20d86f91af1f8c31f42af63b7116ad71 141 Hamap MF_01127 Acetyltransferase YpeA [ypeA]. 1 141 49.277 T 29-03-2018 IPR023072 Acetyltransferase, YpeA GO:0016747 AM354_RS22260 20d86f91af1f8c31f42af63b7116ad71 141 Pfam PF00583 Acetyltransferase (GNAT) family 18 123 3.4E-20 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS18660 11c91f19c6013685b3cf465efdb7191f 185 Gene3D G3DSA:1.20.5.40 108 137 5.4E-13 T 29-03-2018 AM354_RS18660 11c91f19c6013685b3cf465efdb7191f 185 Gene3D G3DSA:1.10.10.60 139 169 1.6E-4 T 29-03-2018 AM354_RS18660 11c91f19c6013685b3cf465efdb7191f 185 Pfam PF00239 Resolvase, N terminal domain 4 138 6.4E-38 T 29-03-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AM354_RS18660 11c91f19c6013685b3cf465efdb7191f 185 ProSitePatterns PS00397 Site-specific recombinases active site. 6 14 - T 29-03-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 AM354_RS18660 11c91f19c6013685b3cf465efdb7191f 185 SUPERFAMILY SSF53041 1 139 1.96E-40 T 29-03-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AM354_RS18660 11c91f19c6013685b3cf465efdb7191f 185 SMART SM00857 3 139 6.0E-44 T 29-03-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AM354_RS18660 11c91f19c6013685b3cf465efdb7191f 185 Gene3D G3DSA:1.10.1220.10 170 180 1.3E-4 T 29-03-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AM354_RS18660 11c91f19c6013685b3cf465efdb7191f 185 Gene3D G3DSA:3.40.50.1390 1 107 3.8E-33 T 29-03-2018 AM354_RS15615 4333a167c42764874ec32378f49cb731 320 Pfam PF01556 DnaJ C terminal domain 137 293 6.3E-35 T 29-03-2018 IPR002939 Chaperone DnaJ, C-terminal AM354_RS15615 4333a167c42764874ec32378f49cb731 320 SUPERFAMILY SSF49493 221 303 4.32E-18 T 29-03-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AM354_RS15615 4333a167c42764874ec32378f49cb731 320 Gene3D G3DSA:1.10.287.110 1 125 5.9E-32 T 29-03-2018 IPR001623 DnaJ domain AM354_RS15615 4333a167c42764874ec32378f49cb731 320 SMART SM00271 4 61 1.3E-26 T 29-03-2018 IPR001623 DnaJ domain AM354_RS15615 4333a167c42764874ec32378f49cb731 320 Pfam PF00226 DnaJ domain 5 66 5.3E-23 T 29-03-2018 IPR001623 DnaJ domain AM354_RS15615 4333a167c42764874ec32378f49cb731 320 SUPERFAMILY SSF46565 1 114 3.66E-27 T 29-03-2018 IPR001623 DnaJ domain AM354_RS15615 4333a167c42764874ec32378f49cb731 320 Gene3D G3DSA:2.60.260.20 221 299 4.6E-20 T 29-03-2018 AM354_RS15615 4333a167c42764874ec32378f49cb731 320 SUPERFAMILY SSF49493 132 228 1.22E-17 T 29-03-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AM354_RS15615 4333a167c42764874ec32378f49cb731 320 ProSitePatterns PS00636 Nt-dnaJ domain signature. 46 65 - T 29-03-2018 IPR018253 DnaJ domain, conserved site AM354_RS15615 4333a167c42764874ec32378f49cb731 320 Gene3D G3DSA:2.60.260.20 135 215 5.5E-18 T 29-03-2018 AM354_RS15615 4333a167c42764874ec32378f49cb731 320 Gene3D G3DSA:1.20.5.460 300 320 2.7E-13 T 29-03-2018 AM354_RS15615 4333a167c42764874ec32378f49cb731 320 PRINTS PR00625 DnaJ domain signature 159 178 4.8E-19 T 29-03-2018 IPR001623 DnaJ domain AM354_RS15615 4333a167c42764874ec32378f49cb731 320 PRINTS PR00625 DnaJ domain signature 7 25 4.8E-19 T 29-03-2018 IPR001623 DnaJ domain AM354_RS15615 4333a167c42764874ec32378f49cb731 320 PRINTS PR00625 DnaJ domain signature 25 40 4.8E-19 T 29-03-2018 IPR001623 DnaJ domain AM354_RS15615 4333a167c42764874ec32378f49cb731 320 PRINTS PR00625 DnaJ domain signature 41 61 4.8E-19 T 29-03-2018 IPR001623 DnaJ domain AM354_RS18775 9a94ac5413a45f204193f442db232a95 502 Gene3D G3DSA:3.40.50.300 229 461 3.4E-18 T 29-03-2018 AM354_RS18775 9a94ac5413a45f204193f442db232a95 502 Pfam PF13245 AAA domain 9 226 1.1E-12 T 29-03-2018 AM354_RS18775 9a94ac5413a45f204193f442db232a95 502 SUPERFAMILY SSF52540 137 464 5.13E-57 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS18775 9a94ac5413a45f204193f442db232a95 502 SUPERFAMILY SSF52540 6 107 5.13E-57 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS18775 9a94ac5413a45f204193f442db232a95 502 Gene3D G3DSA:3.40.50.300 2 228 4.7E-24 T 29-03-2018 AM354_RS18775 9a94ac5413a45f204193f442db232a95 502 Pfam PF13361 UvrD-like helicase C-terminal domain 327 459 1.2E-12 T 29-03-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AM354_RS04255 8f0064aa48cf5ec9408cef592defa9e5 519 Pfam PF02378 Phosphotransferase system, EIIC 16 350 3.4E-57 T 29-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AM354_RS04255 8f0064aa48cf5ec9408cef592defa9e5 519 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 411 502 2.6E-22 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM354_RS04255 8f0064aa48cf5ec9408cef592defa9e5 519 SUPERFAMILY SSF55604 445 516 1.96E-21 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM354_RS04255 8f0064aa48cf5ec9408cef592defa9e5 519 Gene3D G3DSA:3.30.1360.60 441 516 1.8E-27 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM354_RS04255 8f0064aa48cf5ec9408cef592defa9e5 519 Pfam PF00367 phosphotransferase system, EIIB 447 478 5.6E-15 T 29-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AM354_RS04255 8f0064aa48cf5ec9408cef592defa9e5 519 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 456 473 - T 29-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AM354_RS17590 360a075640d88f11a92dc760189c7b8a 334 Pfam PF01548 Transposase 7 147 1.0E-18 T 29-03-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AM354_RS17590 360a075640d88f11a92dc760189c7b8a 334 Pfam PF02371 Transposase IS116/IS110/IS902 family 210 286 1.0E-19 T 29-03-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AM354_RS18550 360a075640d88f11a92dc760189c7b8a 334 Pfam PF01548 Transposase 7 147 1.0E-18 T 29-03-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AM354_RS18550 360a075640d88f11a92dc760189c7b8a 334 Pfam PF02371 Transposase IS116/IS110/IS902 family 210 286 1.0E-19 T 29-03-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AM354_RS18710 360a075640d88f11a92dc760189c7b8a 334 Pfam PF01548 Transposase 7 147 1.0E-18 T 29-03-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AM354_RS18710 360a075640d88f11a92dc760189c7b8a 334 Pfam PF02371 Transposase IS116/IS110/IS902 family 210 286 1.0E-19 T 29-03-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AM354_RS05825 5824cc8662ec1d5e969126d4ee883b4a 573 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 380 526 1.8E-39 T 29-03-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AM354_RS05825 5824cc8662ec1d5e969126d4ee883b4a 573 Gene3D G3DSA:3.40.50.970 338 538 2.7E-43 T 29-03-2018 AM354_RS05825 5824cc8662ec1d5e969126d4ee883b4a 573 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 170 1.5E-41 T 29-03-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AM354_RS05825 5824cc8662ec1d5e969126d4ee883b4a 573 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 192 319 2.3E-32 T 29-03-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AM354_RS05825 5824cc8662ec1d5e969126d4ee883b4a 573 Gene3D G3DSA:3.40.50.970 1 189 3.5E-42 T 29-03-2018 AM354_RS05825 5824cc8662ec1d5e969126d4ee883b4a 573 SUPERFAMILY SSF52518 2 179 1.49E-43 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS05825 5824cc8662ec1d5e969126d4ee883b4a 573 SUPERFAMILY SSF52467 182 351 3.09E-46 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM354_RS05825 5824cc8662ec1d5e969126d4ee883b4a 573 Gene3D G3DSA:3.40.50.1220 190 337 2.0E-34 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM354_RS05825 5824cc8662ec1d5e969126d4ee883b4a 573 SUPERFAMILY SSF52518 357 558 2.03E-60 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS05825 5824cc8662ec1d5e969126d4ee883b4a 573 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 417 436 - T 29-03-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 AM354_RS08225 a770660c8096a8dcac5e83c34abde797 478 Gene3D G3DSA:2.10.10.20 434 476 3.5E-14 T 29-03-2018 AM354_RS08225 a770660c8096a8dcac5e83c34abde797 478 Pfam PF00704 Glycosyl hydrolases family 18 25 303 9.6E-30 T 29-03-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 AM354_RS08225 a770660c8096a8dcac5e83c34abde797 478 Gene3D G3DSA:2.60.40.10 327 421 1.9E-16 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS08225 a770660c8096a8dcac5e83c34abde797 478 SUPERFAMILY SSF49265 330 422 1.8E-14 T 29-03-2018 IPR003961 Fibronectin type III GO:0005515 AM354_RS08225 a770660c8096a8dcac5e83c34abde797 478 SUPERFAMILY SSF51445 21 313 5.36E-49 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily AM354_RS08225 a770660c8096a8dcac5e83c34abde797 478 Gene3D G3DSA:3.20.20.80 17 326 3.3E-44 T 29-03-2018 AM354_RS08225 a770660c8096a8dcac5e83c34abde797 478 SMART SM00060 336 409 1.1E-5 T 29-03-2018 IPR003961 Fibronectin type III GO:0005515 AM354_RS08225 a770660c8096a8dcac5e83c34abde797 478 SUPERFAMILY SSF51055 433 476 6.41E-16 T 29-03-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 AM354_RS08225 a770660c8096a8dcac5e83c34abde797 478 ProSitePatterns PS01095 Chitinases family 18 active site. 131 139 - T 29-03-2018 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 AM354_RS08225 a770660c8096a8dcac5e83c34abde797 478 SMART SM00495 431 477 2.6E-12 T 29-03-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 AM354_RS17420 f4350e6b7dd4ff3b0b6c01c31d4a15a6 757 Gene3D G3DSA:3.30.1360.40 239 332 1.9E-22 T 29-03-2018 IPR024946 Arginine repressor C-terminal-like domain Reactome: R-HSA-4615885 AM354_RS17420 f4350e6b7dd4ff3b0b6c01c31d4a15a6 757 Gene3D G3DSA:3.90.199.10 35 216 3.5E-74 T 29-03-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 AM354_RS17420 f4350e6b7dd4ff3b0b6c01c31d4a15a6 757 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 33 469 3.9E-134 T 29-03-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM354_RS17420 f4350e6b7dd4ff3b0b6c01c31d4a15a6 757 SMART SM00434 12 462 9.6E-238 T 29-03-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM354_RS17420 f4350e6b7dd4ff3b0b6c01c31d4a15a6 757 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 645 696 2.2E-7 T 29-03-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AM354_RS17420 f4350e6b7dd4ff3b0b6c01c31d4a15a6 757 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 597 632 0.0021 T 29-03-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AM354_RS17420 f4350e6b7dd4ff3b0b6c01c31d4a15a6 757 Gene3D G3DSA:2.120.10.90 496 746 3.1E-42 T 29-03-2018 AM354_RS17420 f4350e6b7dd4ff3b0b6c01c31d4a15a6 757 SUPERFAMILY SSF101904 498 744 1.19E-51 T 29-03-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal AM354_RS17420 f4350e6b7dd4ff3b0b6c01c31d4a15a6 757 SUPERFAMILY SSF56719 32 483 5.1E-155 T 29-03-2018 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AM354_RS17420 f4350e6b7dd4ff3b0b6c01c31d4a15a6 757 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 5 743 34.294 T 29-03-2018 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM354_RS17420 f4350e6b7dd4ff3b0b6c01c31d4a15a6 757 Gene3D G3DSA:1.10.268.10 345 484 3.7E-45 T 29-03-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM354_RS17420 f4350e6b7dd4ff3b0b6c01c31d4a15a6 757 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 9 743 0.0 T 29-03-2018 AM354_RS13925 2cfc4ef86e77b36149662df3797bee6a 134 Pfam PF00293 NUDIX domain 14 113 5.6E-13 T 29-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AM354_RS13925 2cfc4ef86e77b36149662df3797bee6a 134 ProSitePatterns PS00893 Nudix box signature. 35 56 - T 29-03-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AM354_RS13925 2cfc4ef86e77b36149662df3797bee6a 134 SUPERFAMILY SSF55811 11 116 6.09E-19 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 AM354_RS13925 2cfc4ef86e77b36149662df3797bee6a 134 Gene3D G3DSA:3.90.79.10 4 131 1.3E-17 T 29-03-2018 AM354_RS20100 a4782722cac4b37b395e8e00d97d8386 367 PIRSF PIRSF028774 1 360 2.6E-188 T 29-03-2018 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 AM354_RS20100 a4782722cac4b37b395e8e00d97d8386 367 Hamap MF_01551 Ribosomal RNA large subunit methyltransferase M [rlmM]. 1 355 85.318 T 29-03-2018 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 AM354_RS20100 a4782722cac4b37b395e8e00d97d8386 367 Pfam PF01728 FtsJ-like methyltransferase 186 267 4.0E-8 T 29-03-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 AM354_RS20100 a4782722cac4b37b395e8e00d97d8386 367 SUPERFAMILY SSF53335 184 295 2.91E-13 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS20100 a4782722cac4b37b395e8e00d97d8386 367 Gene3D G3DSA:3.40.50.150 176 357 1.6E-21 T 29-03-2018 AM354_RS02150 430efcb7ca102751736400a65ff812b5 282 Pfam PF12833 Helix-turn-helix domain 198 275 2.7E-18 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS02150 430efcb7ca102751736400a65ff812b5 282 Gene3D G3DSA:1.10.10.60 230 278 4.7E-12 T 29-03-2018 AM354_RS02150 430efcb7ca102751736400a65ff812b5 282 Gene3D G3DSA:1.10.10.60 143 229 4.1E-15 T 29-03-2018 AM354_RS02150 430efcb7ca102751736400a65ff812b5 282 Pfam PF02311 AraC-like ligand binding domain 23 155 2.6E-20 T 29-03-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AM354_RS02150 430efcb7ca102751736400a65ff812b5 282 SMART SM00342 191 273 8.7E-21 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS02150 430efcb7ca102751736400a65ff812b5 282 SUPERFAMILY SSF51215 20 161 7.85E-24 T 29-03-2018 AM354_RS02150 430efcb7ca102751736400a65ff812b5 282 SUPERFAMILY SSF46689 177 225 8.36E-11 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS02150 430efcb7ca102751736400a65ff812b5 282 SUPERFAMILY SSF46689 228 277 2.26E-9 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS02150 430efcb7ca102751736400a65ff812b5 282 Gene3D G3DSA:2.60.120.10 9 105 4.3E-4 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS24910 ad0a658a82e3f946ed0914e518fca3bb 144 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 57 67 1.2E-10 T 29-03-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 AM354_RS24910 ad0a658a82e3f946ed0914e518fca3bb 144 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 68 79 1.2E-10 T 29-03-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 AM354_RS24910 ad0a658a82e3f946ed0914e518fca3bb 144 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 96 108 1.2E-10 T 29-03-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 AM354_RS24910 ad0a658a82e3f946ed0914e518fca3bb 144 SUPERFAMILY SSF51306 19 139 5.58E-34 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AM354_RS24910 ad0a658a82e3f946ed0914e518fca3bb 144 Gene3D G3DSA:2.10.109.10 25 142 9.7E-26 T 29-03-2018 AM354_RS24910 ad0a658a82e3f946ed0914e518fca3bb 144 Pfam PF00717 Peptidase S24-like 62 126 1.5E-13 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AM354_RS05845 0d4604ecb14063547042654241526b94 275 Gene3D G3DSA:1.10.10.10 1 81 1.0E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS05845 0d4604ecb14063547042654241526b94 275 SUPERFAMILY SSF46689 5 81 8.42E-19 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS05845 0d4604ecb14063547042654241526b94 275 Pfam PF01380 SIS domain 122 229 1.8E-19 T 29-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AM354_RS05845 0d4604ecb14063547042654241526b94 275 SUPERFAMILY SSF53697 93 265 5.84E-32 T 29-03-2018 AM354_RS05845 0d4604ecb14063547042654241526b94 275 Gene3D G3DSA:3.40.50.10490 89 274 2.9E-34 T 29-03-2018 AM354_RS05845 0d4604ecb14063547042654241526b94 275 Pfam PF01418 Helix-turn-helix domain, rpiR family 6 80 8.2E-19 T 29-03-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 AM354_RS22325 e603308d90dbde47f250afd740f44650 575 Pfam PF00391 PEP-utilising enzyme, mobile domain 152 222 2.2E-22 T 29-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AM354_RS22325 e603308d90dbde47f250afd740f44650 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 500 512 4.5E-31 T 29-03-2018 AM354_RS22325 e603308d90dbde47f250afd740f44650 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 464 479 4.5E-31 T 29-03-2018 AM354_RS22325 e603308d90dbde47f250afd740f44650 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 293 312 4.5E-31 T 29-03-2018 AM354_RS22325 e603308d90dbde47f250afd740f44650 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 447 462 4.5E-31 T 29-03-2018 AM354_RS22325 e603308d90dbde47f250afd740f44650 575 Gene3D G3DSA:1.10.274.10 24 144 1.2E-34 T 29-03-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AM354_RS22325 e603308d90dbde47f250afd740f44650 575 Gene3D G3DSA:3.20.20.60 250 573 1.2E-103 T 29-03-2018 AM354_RS22325 e603308d90dbde47f250afd740f44650 575 SUPERFAMILY SSF51621 252 549 6.54E-111 T 29-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AM354_RS22325 e603308d90dbde47f250afd740f44650 575 Pfam PF05524 PEP-utilising enzyme, N-terminal 4 126 2.7E-29 T 29-03-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AM354_RS22325 e603308d90dbde47f250afd740f44650 575 SUPERFAMILY SSF52009 125 246 2.35E-36 T 29-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AM354_RS22325 e603308d90dbde47f250afd740f44650 575 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 184 195 - T 29-03-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 AM354_RS22325 e603308d90dbde47f250afd740f44650 575 SUPERFAMILY SSF47831 24 143 3.79E-33 T 29-03-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AM354_RS22325 e603308d90dbde47f250afd740f44650 575 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 2 566 7.5E-261 T 29-03-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 AM354_RS22325 e603308d90dbde47f250afd740f44650 575 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 447 465 - T 29-03-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 AM354_RS22325 e603308d90dbde47f250afd740f44650 575 Gene3D G3DSA:3.50.30.10 146 245 9.7E-26 T 29-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AM354_RS22325 e603308d90dbde47f250afd740f44650 575 PIRSF PIRSF000732 1 574 1.4E-219 T 29-03-2018 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 AM354_RS22325 e603308d90dbde47f250afd740f44650 575 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 252 541 3.3E-126 T 29-03-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 AM354_RS26105 4bc9b2446c1718820d58b43714bd9668 606 SUPERFAMILY SSF51126 75 396 9.94E-5 T 29-03-2018 IPR011050 Pectin lyase fold/virulence factor AM354_RS23695 495ddaf030c1d005cedc90e20d2df191 315 SUPERFAMILY SSF53807 32 297 2.0E-58 T 29-03-2018 AM354_RS23695 495ddaf030c1d005cedc90e20d2df191 315 Gene3D G3DSA:3.40.50.1980 32 150 7.4E-25 T 29-03-2018 AM354_RS23695 495ddaf030c1d005cedc90e20d2df191 315 Gene3D G3DSA:3.40.50.1980 151 314 8.8E-36 T 29-03-2018 AM354_RS23695 495ddaf030c1d005cedc90e20d2df191 315 Pfam PF01497 Periplasmic binding protein 52 287 6.5E-27 T 29-03-2018 IPR002491 ABC transporter periplasmic binding domain GO:0005488 AM354_RS12390 b68d4287db1f3a466ae2bff03eb5b86a 1115 SUPERFAMILY SSF50182 922 987 3.6E-17 T 29-03-2018 IPR010920 LSM domain AM354_RS12390 b68d4287db1f3a466ae2bff03eb5b86a 1115 Gene3D G3DSA:2.30.30.60 938 988 7.8E-12 T 29-03-2018 AM354_RS12390 b68d4287db1f3a466ae2bff03eb5b86a 1115 Gene3D G3DSA:3.30.70.100 989 1083 5.1E-10 T 29-03-2018 AM354_RS12390 b68d4287db1f3a466ae2bff03eb5b86a 1115 Pfam PF12794 Mechanosensitive ion channel inner membrane domain 1 481 818 3.5E-115 T 29-03-2018 IPR025692 Mechanosensitive ion channel inner membrane domain 1 AM354_RS12390 b68d4287db1f3a466ae2bff03eb5b86a 1115 Pfam PF12795 Mechanosensitive ion channel porin domain 31 262 1.1E-59 T 29-03-2018 IPR024393 Mechanosensitive ion channel MscS, porin domain AM354_RS12390 b68d4287db1f3a466ae2bff03eb5b86a 1115 Gene3D G3DSA:1.20.5.110 234 652 3.3E-7 T 29-03-2018 AM354_RS12390 b68d4287db1f3a466ae2bff03eb5b86a 1115 Pfam PF00924 Mechanosensitive ion channel 879 1077 5.4E-50 T 29-03-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 AM354_RS12390 b68d4287db1f3a466ae2bff03eb5b86a 1115 SUPERFAMILY SSF82689 990 1086 1.96E-14 T 29-03-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 AM354_RS12390 b68d4287db1f3a466ae2bff03eb5b86a 1115 SUPERFAMILY SSF82861 838 920 8.11E-7 T 29-03-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 AM354_RS23085 bb3c8f1cd30f4bf90d7e9b852aaa0b85 400 SUPERFAMILY SSF53067 4 199 2.46E-62 T 29-03-2018 AM354_RS23085 bb3c8f1cd30f4bf90d7e9b852aaa0b85 400 Hamap MF_00020 Acetate kinase [ackA]. 1 400 186.076 T 29-03-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM354_RS23085 bb3c8f1cd30f4bf90d7e9b852aaa0b85 400 SUPERFAMILY SSF53067 160 398 4.71E-83 T 29-03-2018 AM354_RS23085 bb3c8f1cd30f4bf90d7e9b852aaa0b85 400 PIRSF PIRSF000722 2 400 2.4E-142 T 29-03-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM354_RS23085 bb3c8f1cd30f4bf90d7e9b852aaa0b85 400 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 6 17 - T 29-03-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM354_RS23085 bb3c8f1cd30f4bf90d7e9b852aaa0b85 400 TIGRFAM TIGR00016 ackA: acetate kinase 1 399 7.6E-181 T 29-03-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM354_RS23085 bb3c8f1cd30f4bf90d7e9b852aaa0b85 400 PRINTS PR00471 Acetate kinase family signature 380 392 2.4E-47 T 29-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM354_RS23085 bb3c8f1cd30f4bf90d7e9b852aaa0b85 400 PRINTS PR00471 Acetate kinase family signature 6 17 2.4E-47 T 29-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM354_RS23085 bb3c8f1cd30f4bf90d7e9b852aaa0b85 400 PRINTS PR00471 Acetate kinase family signature 206 227 2.4E-47 T 29-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM354_RS23085 bb3c8f1cd30f4bf90d7e9b852aaa0b85 400 PRINTS PR00471 Acetate kinase family signature 302 315 2.4E-47 T 29-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM354_RS23085 bb3c8f1cd30f4bf90d7e9b852aaa0b85 400 PRINTS PR00471 Acetate kinase family signature 176 189 2.4E-47 T 29-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM354_RS23085 bb3c8f1cd30f4bf90d7e9b852aaa0b85 400 PRINTS PR00471 Acetate kinase family signature 325 341 2.4E-47 T 29-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM354_RS23085 bb3c8f1cd30f4bf90d7e9b852aaa0b85 400 Gene3D G3DSA:3.30.420.40 5 198 1.9E-66 T 29-03-2018 AM354_RS23085 bb3c8f1cd30f4bf90d7e9b852aaa0b85 400 Pfam PF00871 Acetokinase family 6 393 8.9E-173 T 29-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM354_RS23085 bb3c8f1cd30f4bf90d7e9b852aaa0b85 400 Gene3D G3DSA:3.30.420.40 199 400 2.4E-76 T 29-03-2018 AM354_RS23085 bb3c8f1cd30f4bf90d7e9b852aaa0b85 400 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 206 223 - T 29-03-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM354_RS01990 27ba793637bb560f79b97cc8540b084f 729 Pfam PF00593 TonB dependent receptor 264 728 6.4E-63 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS01990 27ba793637bb560f79b97cc8540b084f 729 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 78 728 7.3E-123 T 29-03-2018 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 AM354_RS01990 27ba793637bb560f79b97cc8540b084f 729 Gene3D G3DSA:2.40.170.20 192 729 1.9E-86 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS01990 27ba793637bb560f79b97cc8540b084f 729 Gene3D G3DSA:2.170.130.10 33 191 2.8E-24 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS01990 27ba793637bb560f79b97cc8540b084f 729 SUPERFAMILY SSF56935 37 729 2.27E-133 T 29-03-2018 AM354_RS01990 27ba793637bb560f79b97cc8540b084f 729 Pfam PF07715 TonB-dependent Receptor Plug Domain 76 179 2.2E-19 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS19310 3ccdc6ecefdc2099e62f5d352cf3d821 288 Gene3D G3DSA:3.30.70.100 180 273 1.2E-25 T 29-03-2018 AM354_RS19310 3ccdc6ecefdc2099e62f5d352cf3d821 288 Pfam PF05552 Conserved TM helix 15 64 1.2E-13 T 29-03-2018 IPR008910 Conserved TM helix AM354_RS19310 3ccdc6ecefdc2099e62f5d352cf3d821 288 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 143 177 - T 29-03-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 AM354_RS19310 3ccdc6ecefdc2099e62f5d352cf3d821 288 Pfam PF00924 Mechanosensitive ion channel 72 268 7.3E-57 T 29-03-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 AM354_RS19310 3ccdc6ecefdc2099e62f5d352cf3d821 288 Gene3D G3DSA:2.30.30.60 130 179 1.7E-15 T 29-03-2018 AM354_RS19310 3ccdc6ecefdc2099e62f5d352cf3d821 288 SUPERFAMILY SSF82861 28 112 6.28E-17 T 29-03-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 AM354_RS19310 3ccdc6ecefdc2099e62f5d352cf3d821 288 SUPERFAMILY SSF50182 114 179 3.6E-17 T 29-03-2018 IPR010920 LSM domain AM354_RS19310 3ccdc6ecefdc2099e62f5d352cf3d821 288 SUPERFAMILY SSF82689 181 278 5.1E-30 T 29-03-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 AM354_RS08015 e146a779327948eb010b491693828191 405 Gene3D G3DSA:3.90.1170.30 47 118 1.3E-4 T 29-03-2018 AM354_RS08015 e146a779327948eb010b491693828191 405 Gene3D G3DSA:3.90.1170.30 1 46 2.2E-14 T 29-03-2018 AM354_RS08015 e146a779327948eb010b491693828191 405 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 28 57 - T 29-03-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AM354_RS08015 e146a779327948eb010b491693828191 405 Pfam PF00364 Biotin-requiring enzyme 5 77 7.4E-18 T 29-03-2018 IPR000089 Biotin/lipoyl attachment AM354_RS08015 e146a779327948eb010b491693828191 405 SUPERFAMILY SSF52777 175 404 6.23E-90 T 29-03-2018 AM354_RS08015 e146a779327948eb010b491693828191 405 Gene3D G3DSA:4.10.320.10 119 158 1.2E-16 T 29-03-2018 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 AM354_RS08015 e146a779327948eb010b491693828191 405 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 4 405 3.5E-191 T 29-03-2018 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|Reactome: R-HSA-389661|Reactome: R-HSA-71064|Reactome: R-HSA-71403 AM354_RS08015 e146a779327948eb010b491693828191 405 SUPERFAMILY SSF47005 107 152 7.32E-12 T 29-03-2018 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 AM354_RS08015 e146a779327948eb010b491693828191 405 Pfam PF02817 e3 binding domain 114 147 8.4E-13 T 29-03-2018 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 AM354_RS08015 e146a779327948eb010b491693828191 405 Gene3D G3DSA:3.30.559.10 159 403 1.2E-92 T 29-03-2018 AM354_RS08015 e146a779327948eb010b491693828191 405 SUPERFAMILY SSF51230 2 95 3.14E-24 T 29-03-2018 IPR011053 Single hybrid motif AM354_RS08015 e146a779327948eb010b491693828191 405 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 175 403 3.4E-83 T 29-03-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 AM354_RS16045 41b1f25fa34f86b5ca60f1aae5023954 63 Pfam PF00831 Ribosomal L29 protein 4 60 3.8E-23 T 29-03-2018 IPR001854 Ribosomal protein L29/L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16045 41b1f25fa34f86b5ca60f1aae5023954 63 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 18.797 T 29-03-2018 IPR001854 Ribosomal protein L29/L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16045 41b1f25fa34f86b5ca60f1aae5023954 63 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 1.6E-22 T 29-03-2018 IPR001854 Ribosomal protein L29/L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16045 41b1f25fa34f86b5ca60f1aae5023954 63 SUPERFAMILY SSF46561 1 61 1.07E-21 T 29-03-2018 IPR001854 Ribosomal protein L29/L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16045 41b1f25fa34f86b5ca60f1aae5023954 63 Gene3D G3DSA:1.10.287.310 1 62 2.9E-22 T 29-03-2018 AM354_RS16045 41b1f25fa34f86b5ca60f1aae5023954 63 ProSitePatterns PS00579 Ribosomal protein L29 signature. 39 53 - T 29-03-2018 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS01370 e91cda4614d1b1781d4add1be5a388f2 1295 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 617 693 2.8E-19 T 29-03-2018 IPR011709 Domain of unknown function DUF1605 AM354_RS01370 e91cda4614d1b1781d4add1be5a388f2 1295 SMART SM00382 88 380 3.8E-6 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS01370 e91cda4614d1b1781d4add1be5a388f2 1295 SMART SM00490 300 400 3.7E-15 T 29-03-2018 IPR001650 Helicase, C-terminal AM354_RS01370 e91cda4614d1b1781d4add1be5a388f2 1295 TIGRFAM TIGR01967 DEAH_box_HrpA: RNA helicase HrpA 11 1292 0.0 T 29-03-2018 IPR010222 RNA helicase HrpA GO:0004004 AM354_RS01370 e91cda4614d1b1781d4add1be5a388f2 1295 Pfam PF04408 Helicase associated domain (HA2) 462 552 6.3E-16 T 29-03-2018 IPR007502 Helicase-associated domain GO:0004386 AM354_RS01370 e91cda4614d1b1781d4add1be5a388f2 1295 Pfam PF00270 DEAD/DEAH box helicase 82 229 7.2E-6 T 29-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AM354_RS01370 e91cda4614d1b1781d4add1be5a388f2 1295 SMART SM00487 71 255 2.9E-27 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AM354_RS01370 e91cda4614d1b1781d4add1be5a388f2 1295 Pfam PF11898 Domain of unknown function (DUF3418) 708 1291 1.4E-240 T 29-03-2018 IPR024590 RNA helicase HrpA, C-terminal AM354_RS01370 e91cda4614d1b1781d4add1be5a388f2 1295 Gene3D G3DSA:3.40.50.300 72 231 1.1E-28 T 29-03-2018 AM354_RS01370 e91cda4614d1b1781d4add1be5a388f2 1295 Gene3D G3DSA:3.40.50.300 249 418 1.0E-45 T 29-03-2018 AM354_RS01370 e91cda4614d1b1781d4add1be5a388f2 1295 SUPERFAMILY SSF52540 70 596 1.15E-107 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS01370 e91cda4614d1b1781d4add1be5a388f2 1295 Pfam PF00271 Helicase conserved C-terminal domain 282 399 8.9E-11 T 29-03-2018 IPR001650 Helicase, C-terminal AM354_RS01370 e91cda4614d1b1781d4add1be5a388f2 1295 SMART SM00847 460 554 7.9E-34 T 29-03-2018 IPR007502 Helicase-associated domain GO:0004386 AM354_RS01675 29f49a00030d9d461591d060e93cbad8 527 SUPERFAMILY SSF161098 285 518 2.06E-38 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS01675 29f49a00030d9d461591d060e93cbad8 527 SUPERFAMILY SSF161098 23 254 1.09E-35 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS01675 29f49a00030d9d461591d060e93cbad8 527 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 63 259 1.1E-6 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS01675 29f49a00030d9d461591d060e93cbad8 527 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 344 524 4.5E-21 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS01675 29f49a00030d9d461591d060e93cbad8 527 Gene3D G3DSA:1.10.3720.10 272 525 1.2E-27 T 29-03-2018 AM354_RS01675 29f49a00030d9d461591d060e93cbad8 527 Gene3D G3DSA:1.10.3720.10 25 268 1.7E-26 T 29-03-2018 AM354_RS16985 11c61cb1702ce65c8436d1d09b7aa440 456 Gene3D G3DSA:2.40.10.10 28 139 1.6E-32 T 29-03-2018 AM354_RS16985 11c61cb1702ce65c8436d1d09b7aa440 456 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 378 444 1.1E-10 T 29-03-2018 IPR001478 PDZ domain GO:0005515 AM354_RS16985 11c61cb1702ce65c8436d1d09b7aa440 456 PRINTS PR00834 HtrA/DegQ protease family signature 165 189 2.0E-58 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AM354_RS16985 11c61cb1702ce65c8436d1d09b7aa440 456 PRINTS PR00834 HtrA/DegQ protease family signature 103 115 2.0E-58 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AM354_RS16985 11c61cb1702ce65c8436d1d09b7aa440 456 PRINTS PR00834 HtrA/DegQ protease family signature 308 320 2.0E-58 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AM354_RS16985 11c61cb1702ce65c8436d1d09b7aa440 456 PRINTS PR00834 HtrA/DegQ protease family signature 200 217 2.0E-58 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AM354_RS16985 11c61cb1702ce65c8436d1d09b7aa440 456 PRINTS PR00834 HtrA/DegQ protease family signature 222 239 2.0E-58 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AM354_RS16985 11c61cb1702ce65c8436d1d09b7aa440 456 PRINTS PR00834 HtrA/DegQ protease family signature 124 144 2.0E-58 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AM354_RS16985 11c61cb1702ce65c8436d1d09b7aa440 456 SUPERFAMILY SSF50156 226 351 9.6E-25 T 29-03-2018 IPR001478 PDZ domain GO:0005515 AM354_RS16985 11c61cb1702ce65c8436d1d09b7aa440 456 Gene3D G3DSA:2.40.10.10 140 258 7.2E-41 T 29-03-2018 AM354_RS16985 11c61cb1702ce65c8436d1d09b7aa440 456 Pfam PF13180 PDZ domain 279 359 4.5E-17 T 29-03-2018 IPR001478 PDZ domain GO:0005515 AM354_RS16985 11c61cb1702ce65c8436d1d09b7aa440 456 Gene3D G3DSA:2.30.42.10 263 367 6.6E-28 T 29-03-2018 AM354_RS16985 11c61cb1702ce65c8436d1d09b7aa440 456 SUPERFAMILY SSF50156 378 455 4.21E-15 T 29-03-2018 IPR001478 PDZ domain GO:0005515 AM354_RS16985 11c61cb1702ce65c8436d1d09b7aa440 456 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 40 454 4.5E-161 T 29-03-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 AM354_RS16985 11c61cb1702ce65c8436d1d09b7aa440 456 Gene3D G3DSA:2.30.42.10 368 456 1.5E-13 T 29-03-2018 AM354_RS16985 11c61cb1702ce65c8436d1d09b7aa440 456 SUPERFAMILY SSF50494 38 264 5.83E-65 T 29-03-2018 IPR009003 Peptidase S1, PA clan AM354_RS16985 11c61cb1702ce65c8436d1d09b7aa440 456 Pfam PF13365 Trypsin-like peptidase domain 93 229 9.7E-32 T 29-03-2018 AM354_RS16985 11c61cb1702ce65c8436d1d09b7aa440 456 SMART SM00228 381 448 4.1E-8 T 29-03-2018 IPR001478 PDZ domain GO:0005515 AM354_RS16985 11c61cb1702ce65c8436d1d09b7aa440 456 SMART SM00228 268 350 3.1E-14 T 29-03-2018 IPR001478 PDZ domain GO:0005515 AM354_RS16100 508232d7eca785fea812e05998841785 144 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 143 1.3E-30 T 29-03-2018 IPR021131 Ribosomal protein L18e/L15P AM354_RS16100 508232d7eca785fea812e05998841785 144 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 144 19.188 T 29-03-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 AM354_RS16100 508232d7eca785fea812e05998841785 144 SUPERFAMILY SSF52080 4 143 3.53E-46 T 29-03-2018 IPR021131 Ribosomal protein L18e/L15P AM354_RS16100 508232d7eca785fea812e05998841785 144 Gene3D G3DSA:3.100.10.10 42 144 4.7E-24 T 29-03-2018 AM354_RS16100 508232d7eca785fea812e05998841785 144 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 143 2.1E-50 T 29-03-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS16100 508232d7eca785fea812e05998841785 144 ProSitePatterns PS00475 Ribosomal protein L15 signature. 109 139 - T 29-03-2018 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16030 f8dac1c557d023b0b5dfdfbd193dce1b 110 ProSitePatterns PS00464 Ribosomal protein L22 signature. 83 107 - T 29-03-2018 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS16030 f8dac1c557d023b0b5dfdfbd193dce1b 110 SUPERFAMILY SSF54843 1 109 1.57E-42 T 29-03-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 AM354_RS16030 f8dac1c557d023b0b5dfdfbd193dce1b 110 Pfam PF00237 Ribosomal protein L22p/L17e 5 107 8.3E-38 T 29-03-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 AM354_RS16030 f8dac1c557d023b0b5dfdfbd193dce1b 110 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 110 28.807 T 29-03-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS16030 f8dac1c557d023b0b5dfdfbd193dce1b 110 Gene3D G3DSA:3.90.470.10 1 110 2.5E-42 T 29-03-2018 AM354_RS16030 f8dac1c557d023b0b5dfdfbd193dce1b 110 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 107 1.5E-50 T 29-03-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS24195 a54afae8cf1770ebb8c956b3c8f944b2 294 Hamap MF_00397 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase [citG]. 1 294 167.154 T 29-03-2018 IPR017551 Triphosphoribosyl-dephospho-CoA synthase CitG GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 AM354_RS24195 a54afae8cf1770ebb8c956b3c8f944b2 294 Pfam PF01874 ATP:dephospho-CoA triphosphoribosyl transferase 20 288 1.9E-82 T 29-03-2018 IPR002736 Triphosphoribosyl-dephospho-CoA protein GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 AM354_RS24195 a54afae8cf1770ebb8c956b3c8f944b2 294 TIGRFAM TIGR03125 citrate_citG: triphosphoribosyl-dephospho-CoA synthase CitG 20 289 4.5E-100 T 29-03-2018 IPR017551 Triphosphoribosyl-dephospho-CoA synthase CitG GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 AM354_RS04205 50ae84b4337e8fa7e17aa2314c24aedc 254 Pfam PF00392 Bacterial regulatory proteins, gntR family 32 88 2.9E-14 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS04205 50ae84b4337e8fa7e17aa2314c24aedc 254 Pfam PF07702 UTRA domain 113 248 9.9E-34 T 29-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AM354_RS04205 50ae84b4337e8fa7e17aa2314c24aedc 254 SUPERFAMILY SSF46785 21 95 7.37E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS04205 50ae84b4337e8fa7e17aa2314c24aedc 254 SUPERFAMILY SSF64288 76 253 4.87E-41 T 29-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AM354_RS04205 50ae84b4337e8fa7e17aa2314c24aedc 254 SMART SM00345 32 88 1.5E-12 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS04205 50ae84b4337e8fa7e17aa2314c24aedc 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 62 78 3.2E-9 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS04205 50ae84b4337e8fa7e17aa2314c24aedc 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 62 3.2E-9 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS04205 50ae84b4337e8fa7e17aa2314c24aedc 254 Gene3D G3DSA:3.40.1410.10 96 254 4.3E-38 T 29-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AM354_RS04205 50ae84b4337e8fa7e17aa2314c24aedc 254 SMART SM00866 113 249 3.3E-33 T 29-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AM354_RS04205 50ae84b4337e8fa7e17aa2314c24aedc 254 Gene3D G3DSA:1.10.10.10 1 90 5.6E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS24690 9d54fb0aeadbc8b9b4458b1c1dbdeaf9 352 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 299 307 - T 29-03-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AM354_RS24690 9d54fb0aeadbc8b9b4458b1c1dbdeaf9 352 SUPERFAMILY SSF63380 2 107 6.35E-25 T 29-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AM354_RS24690 9d54fb0aeadbc8b9b4458b1c1dbdeaf9 352 Pfam PF00970 Oxidoreductase FAD-binding domain 8 105 1.5E-12 T 29-03-2018 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 AM354_RS24690 9d54fb0aeadbc8b9b4458b1c1dbdeaf9 352 SUPERFAMILY SSF54292 234 349 8.22E-29 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM354_RS24690 9d54fb0aeadbc8b9b4458b1c1dbdeaf9 352 Pfam PF00175 Oxidoreductase NAD-binding domain 118 226 1.2E-16 T 29-03-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AM354_RS24690 9d54fb0aeadbc8b9b4458b1c1dbdeaf9 352 Gene3D G3DSA:2.40.30.10 2 93 4.0E-20 T 29-03-2018 AM354_RS24690 9d54fb0aeadbc8b9b4458b1c1dbdeaf9 352 Gene3D G3DSA:3.40.50.80 94 237 6.5E-29 T 29-03-2018 AM354_RS24690 9d54fb0aeadbc8b9b4458b1c1dbdeaf9 352 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 268 341 9.8E-16 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM354_RS24690 9d54fb0aeadbc8b9b4458b1c1dbdeaf9 352 TIGRFAM TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit 4 351 2.0E-146 T 29-03-2018 IPR011884 Phenylacetate-CoA oxygenase/reductase, PaaK subunit GO:0010124 AM354_RS24690 9d54fb0aeadbc8b9b4458b1c1dbdeaf9 352 SUPERFAMILY SSF52343 94 242 5.37E-35 T 29-03-2018 AM354_RS24690 9d54fb0aeadbc8b9b4458b1c1dbdeaf9 352 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 116 135 1.7E-7 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM354_RS24690 9d54fb0aeadbc8b9b4458b1c1dbdeaf9 352 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 36 46 1.7E-7 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM354_RS24690 9d54fb0aeadbc8b9b4458b1c1dbdeaf9 352 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 141 150 1.7E-7 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM354_RS24690 9d54fb0aeadbc8b9b4458b1c1dbdeaf9 352 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 55 62 1.7E-7 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM354_RS24690 9d54fb0aeadbc8b9b4458b1c1dbdeaf9 352 PRINTS PR00406 Cytochrome B5 reductase signature 91 105 7.5E-8 T 29-03-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 AM354_RS24690 9d54fb0aeadbc8b9b4458b1c1dbdeaf9 352 PRINTS PR00406 Cytochrome B5 reductase signature 116 135 7.5E-8 T 29-03-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 AM354_RS24690 9d54fb0aeadbc8b9b4458b1c1dbdeaf9 352 PRINTS PR00406 Cytochrome B5 reductase signature 212 220 7.5E-8 T 29-03-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 AM354_RS24690 9d54fb0aeadbc8b9b4458b1c1dbdeaf9 352 Gene3D G3DSA:3.10.20.30 238 352 2.1E-28 T 29-03-2018 IPR012675 Beta-grasp domain AM354_RS04355 30f55150c64b267529f964cad68621a6 288 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 3 275 32.436 T 29-03-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 AM354_RS04355 30f55150c64b267529f964cad68621a6 288 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 3 280 1.7E-105 T 29-03-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 AM354_RS04355 30f55150c64b267529f964cad68621a6 288 SUPERFAMILY SSF54211 3 162 3.19E-49 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM354_RS04355 30f55150c64b267529f964cad68621a6 288 Gene3D G3DSA:3.30.230.10 3 164 1.6E-46 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AM354_RS04355 30f55150c64b267529f964cad68621a6 288 Pfam PF00288 GHMP kinases N terminal domain 91 148 3.0E-10 T 29-03-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 AM354_RS04355 30f55150c64b267529f964cad68621a6 288 Gene3D G3DSA:3.30.70.890 165 282 1.6E-25 T 29-03-2018 IPR013750 GHMP kinase, C-terminal domain AM354_RS04355 30f55150c64b267529f964cad68621a6 288 Pfam PF08544 GHMP kinases C terminal 201 262 7.9E-6 T 29-03-2018 IPR013750 GHMP kinase, C-terminal domain AM354_RS04355 30f55150c64b267529f964cad68621a6 288 SUPERFAMILY SSF55060 165 281 9.59E-36 T 29-03-2018 IPR013750 GHMP kinase, C-terminal domain AM354_RS04355 30f55150c64b267529f964cad68621a6 288 PIRSF PIRSF010376 1 283 1.3E-85 T 29-03-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 AM354_RS22390 972296213db781b4e84aab284a6ce1ea 263 PIRSF PIRSF018982 1 253 1.1E-95 T 29-03-2018 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 AM354_RS22390 972296213db781b4e84aab284a6ce1ea 263 Pfam PF05985 Ethanolamine ammonia-lyase light chain (EutC) 8 242 3.8E-94 T 29-03-2018 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 AM354_RS19750 f741e3b31bc75bb3c2945ae1cc068ee7 306 Gene3D G3DSA:3.40.190.10 93 175 6.2E-16 T 29-03-2018 AM354_RS19750 f741e3b31bc75bb3c2945ae1cc068ee7 306 SUPERFAMILY SSF46785 9 114 4.3E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS19750 f741e3b31bc75bb3c2945ae1cc068ee7 306 Pfam PF03466 LysR substrate binding domain 92 296 6.5E-43 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS19750 f741e3b31bc75bb3c2945ae1cc068ee7 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 3.0E-18 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS19750 f741e3b31bc75bb3c2945ae1cc068ee7 306 SUPERFAMILY SSF53850 93 302 1.3E-45 T 29-03-2018 AM354_RS19750 f741e3b31bc75bb3c2945ae1cc068ee7 306 Gene3D G3DSA:3.40.190.10 176 269 2.7E-24 T 29-03-2018 AM354_RS19750 f741e3b31bc75bb3c2945ae1cc068ee7 306 Gene3D G3DSA:1.10.10.10 7 91 2.7E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS19835 8ae578e9f9ddd2f74977b7e5bd3984e6 227 Gene3D G3DSA:3.40.50.2300 2 128 0.0015 T 29-03-2018 AM354_RS19835 8ae578e9f9ddd2f74977b7e5bd3984e6 227 Gene3D G3DSA:1.10.10.10 129 219 1.4E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS19835 8ae578e9f9ddd2f74977b7e5bd3984e6 227 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 172 188 4.4E-5 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS19835 8ae578e9f9ddd2f74977b7e5bd3984e6 227 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 158 172 4.4E-5 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS19835 8ae578e9f9ddd2f74977b7e5bd3984e6 227 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 188 200 4.4E-5 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS19835 8ae578e9f9ddd2f74977b7e5bd3984e6 227 SUPERFAMILY SSF46894 146 211 4.76E-14 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS19835 8ae578e9f9ddd2f74977b7e5bd3984e6 227 SMART SM00421 155 212 2.8E-7 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS19835 8ae578e9f9ddd2f74977b7e5bd3984e6 227 Pfam PF00196 Bacterial regulatory proteins, luxR family 158 209 5.6E-12 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS16245 68e838dbc025e77b32f07fcdd0750f36 532 Gene3D G3DSA:1.20.1220.12 414 531 1.6E-48 T 29-03-2018 AM354_RS16245 68e838dbc025e77b32f07fcdd0750f36 532 SUPERFAMILY SSF51645 10 531 1.57E-187 T 29-03-2018 IPR011076 Malate synthase-like GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AM354_RS16245 68e838dbc025e77b32f07fcdd0750f36 532 TIGRFAM TIGR01344 malate_syn_A: malate synthase A 23 531 7.0E-251 T 29-03-2018 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AM354_RS16245 68e838dbc025e77b32f07fcdd0750f36 532 Gene3D G3DSA:3.20.20.360 79 413 5.9E-111 T 29-03-2018 AM354_RS16245 68e838dbc025e77b32f07fcdd0750f36 532 ProSitePatterns PS00510 Malate synthase signature. 265 280 - T 29-03-2018 IPR019830 Malate synthase, conserved site GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AM354_RS16245 68e838dbc025e77b32f07fcdd0750f36 532 Pfam PF01274 Malate synthase 12 531 2.4E-209 T 29-03-2018 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AM354_RS16245 68e838dbc025e77b32f07fcdd0750f36 532 PIRSF PIRSF001363 1 532 6.9E-247 T 29-03-2018 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AM354_RS18205 0479a219e4dd5f7649e85f57042c2273 291 Pfam PF13614 AAA domain 1 143 1.3E-16 T 29-03-2018 IPR025669 AAA domain AM354_RS18205 0479a219e4dd5f7649e85f57042c2273 291 Gene3D G3DSA:3.40.50.300 1 283 4.2E-31 T 29-03-2018 AM354_RS18205 0479a219e4dd5f7649e85f57042c2273 291 SUPERFAMILY SSF52540 1 274 1.2E-29 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS19445 bcdcab337dad475522012a69b59d189e 438 SUPERFAMILY SSF53092 2 174 3.98E-53 T 29-03-2018 IPR028980 Creatinase/Aminopeptidase P, N-terminal AM354_RS19445 bcdcab337dad475522012a69b59d189e 438 Pfam PF00557 Metallopeptidase family M24 181 412 8.4E-65 T 29-03-2018 IPR000994 Peptidase M24 AM354_RS19445 bcdcab337dad475522012a69b59d189e 438 Pfam PF05195 Aminopeptidase P, N-terminal domain 6 126 2.2E-36 T 29-03-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 AM354_RS19445 bcdcab337dad475522012a69b59d189e 438 Gene3D G3DSA:3.90.230.10 172 438 9.3E-88 T 29-03-2018 AM354_RS19445 bcdcab337dad475522012a69b59d189e 438 SMART SM01011 1 136 9.1E-60 T 29-03-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 AM354_RS19445 bcdcab337dad475522012a69b59d189e 438 SUPERFAMILY SSF55920 175 434 2.62E-86 T 29-03-2018 IPR000994 Peptidase M24 AM354_RS19445 bcdcab337dad475522012a69b59d189e 438 PRINTS PR00599 Methionine aminopeptidase-1 signature 253 269 7.1E-6 T 29-03-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AM354_RS19445 bcdcab337dad475522012a69b59d189e 438 PRINTS PR00599 Methionine aminopeptidase-1 signature 371 383 7.1E-6 T 29-03-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AM354_RS19445 bcdcab337dad475522012a69b59d189e 438 Gene3D G3DSA:3.40.350.10 1 171 2.6E-49 T 29-03-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal AM354_RS19445 bcdcab337dad475522012a69b59d189e 438 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 348 360 - T 29-03-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site AM354_RS17570 96a9f4f35d94e65bddaf80c5ed9bdc47 417 Gene3D G3DSA:1.20.1250.20 1 201 1.1E-26 T 29-03-2018 AM354_RS17570 96a9f4f35d94e65bddaf80c5ed9bdc47 417 ProSitePatterns PS00897 LacY family proton/sugar symporters signature 2. 280 294 - T 29-03-2018 IPR018457 LacY/RafB permease family, conserved site GO:0006810|GO:0016020 AM354_RS17570 96a9f4f35d94e65bddaf80c5ed9bdc47 417 Pfam PF01306 LacY proton/sugar symporter 2 412 2.8E-205 T 29-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM354_RS17570 96a9f4f35d94e65bddaf80c5ed9bdc47 417 SUPERFAMILY SSF103473 6 401 1.05E-47 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS17570 96a9f4f35d94e65bddaf80c5ed9bdc47 417 ProSitePatterns PS00896 LacY family proton/sugar symporters signature 1. 64 78 - T 29-03-2018 IPR018457 LacY/RafB permease family, conserved site GO:0006810|GO:0016020 AM354_RS17570 96a9f4f35d94e65bddaf80c5ed9bdc47 417 PRINTS PR00174 LacY proton/sugar symporter family signature 315 334 2.3E-111 T 29-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM354_RS17570 96a9f4f35d94e65bddaf80c5ed9bdc47 417 PRINTS PR00174 LacY proton/sugar symporter family signature 214 242 2.3E-111 T 29-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM354_RS17570 96a9f4f35d94e65bddaf80c5ed9bdc47 417 PRINTS PR00174 LacY proton/sugar symporter family signature 103 125 2.3E-111 T 29-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM354_RS17570 96a9f4f35d94e65bddaf80c5ed9bdc47 417 PRINTS PR00174 LacY proton/sugar symporter family signature 145 163 2.3E-111 T 29-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM354_RS17570 96a9f4f35d94e65bddaf80c5ed9bdc47 417 PRINTS PR00174 LacY proton/sugar symporter family signature 260 281 2.3E-111 T 29-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM354_RS17570 96a9f4f35d94e65bddaf80c5ed9bdc47 417 PRINTS PR00174 LacY proton/sugar symporter family signature 284 310 2.3E-111 T 29-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM354_RS17570 96a9f4f35d94e65bddaf80c5ed9bdc47 417 PRINTS PR00174 LacY proton/sugar symporter family signature 68 97 2.3E-111 T 29-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM354_RS17570 96a9f4f35d94e65bddaf80c5ed9bdc47 417 PRINTS PR00174 LacY proton/sugar symporter family signature 346 366 2.3E-111 T 29-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM354_RS17570 96a9f4f35d94e65bddaf80c5ed9bdc47 417 TIGRFAM TIGR00882 2A0105: oligosaccharide:H+ symporter 6 401 1.7E-208 T 29-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM354_RS17570 96a9f4f35d94e65bddaf80c5ed9bdc47 417 Gene3D G3DSA:1.20.1250.20 206 417 1.8E-18 T 29-03-2018 AM354_RS24025 049c1d2723e78481021ac3a1d2f4896f 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 91 104 2.2E-11 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS24025 049c1d2723e78481021ac3a1d2f4896f 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 47 62 2.2E-11 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS24025 049c1d2723e78481021ac3a1d2f4896f 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 216 230 2.2E-11 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS24025 049c1d2723e78481021ac3a1d2f4896f 276 Gene3D G3DSA:3.40.50.1820 1 273 4.6E-54 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS24025 049c1d2723e78481021ac3a1d2f4896f 276 PRINTS PR00412 Epoxide hydrolase signature 27 45 2.0E-6 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AM354_RS24025 049c1d2723e78481021ac3a1d2f4896f 276 PRINTS PR00412 Epoxide hydrolase signature 47 62 2.0E-6 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AM354_RS24025 049c1d2723e78481021ac3a1d2f4896f 276 PRINTS PR00412 Epoxide hydrolase signature 248 270 2.0E-6 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AM354_RS24025 049c1d2723e78481021ac3a1d2f4896f 276 Pfam PF12146 Serine aminopeptidase, S33 23 256 9.5E-21 T 29-03-2018 IPR022742 Serine aminopeptidase, S33 AM354_RS24025 049c1d2723e78481021ac3a1d2f4896f 276 SUPERFAMILY SSF53474 4 272 1.17E-57 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS02565 cfd97e35ce57fe3ea400698d87771b4e 351 Pfam PF03576 Peptidase family S58 37 336 7.8E-98 T 29-03-2018 IPR005321 Peptidase S58, DmpA AM354_RS02565 cfd97e35ce57fe3ea400698d87771b4e 351 SUPERFAMILY SSF56266 29 349 3.66E-86 T 29-03-2018 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 AM354_RS02565 cfd97e35ce57fe3ea400698d87771b4e 351 Gene3D G3DSA:3.60.70.12 19 349 4.0E-92 T 29-03-2018 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 AM354_RS18980 765669520bceeab16a3ea680e95ba861 287 Pfam PF17284 Spermidine synthase tetramerisation domain 6 57 7.0E-19 T 29-03-2018 IPR035246 Spermidine synthase, tetramerisation domain KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 AM354_RS18980 765669520bceeab16a3ea680e95ba861 287 Gene3D G3DSA:2.30.140.10 1 54 4.6E-17 T 29-03-2018 IPR035246 Spermidine synthase, tetramerisation domain KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 AM354_RS18980 765669520bceeab16a3ea680e95ba861 287 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 6 284 39.463 T 29-03-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 AM354_RS18980 765669520bceeab16a3ea680e95ba861 287 Gene3D G3DSA:3.40.50.150 55 286 5.3E-46 T 29-03-2018 AM354_RS18980 765669520bceeab16a3ea680e95ba861 287 TIGRFAM TIGR00417 speE: spermidine synthase 7 278 5.3E-116 T 29-03-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 AM354_RS18980 765669520bceeab16a3ea680e95ba861 287 SUPERFAMILY SSF53335 6 283 6.91E-92 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS18980 765669520bceeab16a3ea680e95ba861 287 ProSitePatterns PS01330 Polyamine biosynthesis (PABS) domain signature. 81 94 - T 29-03-2018 IPR030373 Polyamine biosynthesis domain, conserved site KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 AM354_RS18980 765669520bceeab16a3ea680e95ba861 287 Pfam PF01564 Spermine/spermidine synthase domain 60 241 1.7E-67 T 29-03-2018 AM354_RS06900 4813cc62919d79a618f939f71b9300c7 483 Gene3D G3DSA:1.10.4100.10 390 483 6.9E-13 T 29-03-2018 AM354_RS06900 4813cc62919d79a618f939f71b9300c7 483 SUPERFAMILY SSF103378 13 482 2.62E-154 T 29-03-2018 IPR005656 MmgE/PrpD GO:0016829 AM354_RS06900 4813cc62919d79a618f939f71b9300c7 483 TIGRFAM TIGR02330 prpD: 2-methylcitrate dehydratase 13 483 1.3E-258 T 29-03-2018 IPR012705 2-methylcitrate dehydratase PrpD GO:0019629|GO:0047547|GO:0051537 KEGG: 00640+4.2.1.79 AM354_RS06900 4813cc62919d79a618f939f71b9300c7 483 Gene3D G3DSA:1.10.4100.10 1 331 1.2E-97 T 29-03-2018 AM354_RS06900 4813cc62919d79a618f939f71b9300c7 483 Pfam PF03972 MmgE/PrpD family 18 464 7.4E-157 T 29-03-2018 IPR005656 MmgE/PrpD GO:0016829 AM354_RS15855 0564b0b2d9df204cffd3dac0dc5d03df 289 ProSitePatterns PS00567 Phosphoribulokinase signature. 164 177 - T 29-03-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 AM354_RS15855 0564b0b2d9df204cffd3dac0dc5d03df 289 SUPERFAMILY SSF52540 4 286 4.65E-45 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS15855 0564b0b2d9df204cffd3dac0dc5d03df 289 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 7 214 8.6E-73 T 29-03-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0008152|GO:0016301 Reactome: R-HSA-73614 AM354_RS15855 0564b0b2d9df204cffd3dac0dc5d03df 289 PRINTS PR00478 Phosphoribulokinase family signature 12 29 9.3E-29 T 29-03-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 AM354_RS15855 0564b0b2d9df204cffd3dac0dc5d03df 289 PRINTS PR00478 Phosphoribulokinase family signature 126 144 9.3E-29 T 29-03-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 AM354_RS15855 0564b0b2d9df204cffd3dac0dc5d03df 289 PRINTS PR00478 Phosphoribulokinase family signature 164 181 9.3E-29 T 29-03-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 AM354_RS15855 0564b0b2d9df204cffd3dac0dc5d03df 289 PRINTS PR00478 Phosphoribulokinase family signature 182 205 9.3E-29 T 29-03-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 AM354_RS15855 0564b0b2d9df204cffd3dac0dc5d03df 289 Gene3D G3DSA:3.40.50.300 1 289 3.6E-41 T 29-03-2018 AM354_RS03300 9f095c9942cac588657da8370c739969 261 SMART SM00382 31 220 6.3E-14 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS03300 9f095c9942cac588657da8370c739969 261 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS03300 9f095c9942cac588657da8370c739969 261 SUPERFAMILY SSF52540 7 233 3.04E-55 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS03300 9f095c9942cac588657da8370c739969 261 Gene3D G3DSA:3.40.50.300 1 243 2.3E-56 T 29-03-2018 AM354_RS03300 9f095c9942cac588657da8370c739969 261 Pfam PF00005 ABC transporter 23 171 1.0E-24 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS02190 b3363b375b6fc4316e239cdfa8b09e20 25 Hamap MF_00656 Coenzyme PQQ synthesis protein A [pqqA]. 3 25 11.317 T 29-03-2018 IPR011725 Coenzyme PQQ biosynthesis protein A GO:0018189 AM354_RS02190 b3363b375b6fc4316e239cdfa8b09e20 25 TIGRFAM TIGR02107 PQQ_syn_pqqA: coenzyme PQQ precursor peptide PqqA 4 24 4.6E-12 T 29-03-2018 IPR011725 Coenzyme PQQ biosynthesis protein A GO:0018189 AM354_RS02190 b3363b375b6fc4316e239cdfa8b09e20 25 Pfam PF08042 PqqA family 3 21 4.2E-10 T 29-03-2018 IPR011725 Coenzyme PQQ biosynthesis protein A GO:0018189 AM354_RS11245 385f59a27a0d0144c2fe67b25cbd6010 267 TIGRFAM TIGR02312 HpaH: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 1 267 5.1E-141 T 29-03-2018 IPR012690 2-oxo-hepta-4-ene-1,7-dioic acid hydratase GO:0018817|GO:0019439 AM354_RS11245 385f59a27a0d0144c2fe67b25cbd6010 267 SUPERFAMILY SSF56529 2 267 2.59E-78 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AM354_RS11245 385f59a27a0d0144c2fe67b25cbd6010 267 Gene3D G3DSA:3.90.850.10 1 267 2.5E-47 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AM354_RS11245 385f59a27a0d0144c2fe67b25cbd6010 267 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 91 265 6.6E-6 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AM354_RS01810 bafb8fa762ab2e4e7607d5376906d16d 451 Pfam PF07690 Major Facilitator Superfamily 30 283 5.4E-35 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS01810 bafb8fa762ab2e4e7607d5376906d16d 451 Gene3D G3DSA:1.20.1250.20 14 215 6.4E-38 T 29-03-2018 AM354_RS01810 bafb8fa762ab2e4e7607d5376906d16d 451 Gene3D G3DSA:1.20.1250.20 238 437 2.0E-27 T 29-03-2018 AM354_RS01810 bafb8fa762ab2e4e7607d5376906d16d 451 SUPERFAMILY SSF103473 8 430 7.98E-85 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS01810 bafb8fa762ab2e4e7607d5376906d16d 451 TIGRFAM TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family 10 404 3.9E-130 T 29-03-2018 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family GO:0005215|GO:0006810|GO:0016021 AM354_RS01810 bafb8fa762ab2e4e7607d5376906d16d 451 ProSitePatterns PS00216 Sugar transport proteins signature 1. 79 95 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM354_RS01810 bafb8fa762ab2e4e7607d5376906d16d 451 ProSitePatterns PS00217 Sugar transport proteins signature 2. 121 146 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM354_RS01135 690055adc37cc84867a489374b542a2c 284 Pfam PF03466 LysR substrate binding domain 85 280 2.3E-37 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS01135 690055adc37cc84867a489374b542a2c 284 Gene3D G3DSA:3.40.190.10 89 173 1.4E-12 T 29-03-2018 AM354_RS01135 690055adc37cc84867a489374b542a2c 284 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 6.9E-13 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS01135 690055adc37cc84867a489374b542a2c 284 SUPERFAMILY SSF46785 1 84 2.34E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS01135 690055adc37cc84867a489374b542a2c 284 Gene3D G3DSA:1.10.10.10 1 82 3.1E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS01135 690055adc37cc84867a489374b542a2c 284 Gene3D G3DSA:3.40.190.10 174 257 4.2E-17 T 29-03-2018 AM354_RS01135 690055adc37cc84867a489374b542a2c 284 SUPERFAMILY SSF53850 84 277 1.26E-32 T 29-03-2018 AM354_RS15730 27bbb44447664a1e5c1fa001a0ee207c 232 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 11 222 3.1E-79 T 29-03-2018 IPR006346 2-phosphoglycolate phosphatase, prokaryotic GO:0008967|GO:0046295 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 AM354_RS15730 27bbb44447664a1e5c1fa001a0ee207c 232 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 81 192 7.8E-10 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS15730 27bbb44447664a1e5c1fa001a0ee207c 232 SUPERFAMILY SSF56784 6 222 1.73E-60 T 29-03-2018 IPR023214 HAD-like domain AM354_RS15730 27bbb44447664a1e5c1fa001a0ee207c 232 Pfam PF13419 Haloacid dehalogenase-like hydrolase 12 192 1.1E-37 T 29-03-2018 IPR023214 HAD-like domain AM354_RS15730 27bbb44447664a1e5c1fa001a0ee207c 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 155 175 4.6E-11 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS15730 27bbb44447664a1e5c1fa001a0ee207c 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 137 153 4.6E-11 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS15730 27bbb44447664a1e5c1fa001a0ee207c 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 7 18 4.6E-11 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS15730 27bbb44447664a1e5c1fa001a0ee207c 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 106 119 4.6E-11 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS15730 27bbb44447664a1e5c1fa001a0ee207c 232 Gene3D G3DSA:3.40.50.1000 2 33 0.029 T 29-03-2018 IPR023214 HAD-like domain AM354_RS15730 27bbb44447664a1e5c1fa001a0ee207c 232 Gene3D G3DSA:3.40.50.1000 83 230 1.4E-36 T 29-03-2018 IPR023214 HAD-like domain AM354_RS15730 27bbb44447664a1e5c1fa001a0ee207c 232 Hamap MF_00495 Phosphoglycolate phosphatase [gph]. 7 223 35.868 T 29-03-2018 IPR006346 2-phosphoglycolate phosphatase, prokaryotic GO:0008967|GO:0046295 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 AM354_RS15730 27bbb44447664a1e5c1fa001a0ee207c 232 Gene3D G3DSA:1.10.150.240 34 82 7.1E-23 T 29-03-2018 IPR023198 Phosphoglycolate phosphatase, domain 2 AM354_RS15730 27bbb44447664a1e5c1fa001a0ee207c 232 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 70 187 3.3E-11 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS21275 4d94c4f349459853270c37bd73a3e1c7 141 SUPERFAMILY SSF54919 1 139 8.64E-59 T 29-03-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AM354_RS21275 4d94c4f349459853270c37bd73a3e1c7 141 Pfam PF00334 Nucleoside diphosphate kinase 4 138 3.5E-56 T 29-03-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AM354_RS21275 4d94c4f349459853270c37bd73a3e1c7 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 3.9E-38 T 29-03-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AM354_RS21275 4d94c4f349459853270c37bd73a3e1c7 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 3.9E-38 T 29-03-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AM354_RS21275 4d94c4f349459853270c37bd73a3e1c7 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 3.9E-38 T 29-03-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AM354_RS21275 4d94c4f349459853270c37bd73a3e1c7 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 3.9E-38 T 29-03-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AM354_RS21275 4d94c4f349459853270c37bd73a3e1c7 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 3.9E-38 T 29-03-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AM354_RS21275 4d94c4f349459853270c37bd73a3e1c7 141 SMART SM00562 3 140 3.6E-86 T 29-03-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AM354_RS21275 4d94c4f349459853270c37bd73a3e1c7 141 Gene3D G3DSA:3.30.70.141 1 141 1.4E-53 T 29-03-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AM354_RS21275 4d94c4f349459853270c37bd73a3e1c7 141 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 29-03-2018 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM354_RS21275 4d94c4f349459853270c37bd73a3e1c7 141 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 34.984 T 29-03-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AM354_RS09760 3ad56a57b36828fc2936c8426010e14d 419 PIRSF PIRSF000151 1 419 2.5E-172 T 29-03-2018 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 AM354_RS09760 3ad56a57b36828fc2936c8426010e14d 419 Gene3D G3DSA:3.40.605.10 2 233 2.0E-41 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM354_RS09760 3ad56a57b36828fc2936c8426010e14d 419 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 11 408 8.1E-187 T 29-03-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AM354_RS09760 3ad56a57b36828fc2936c8426010e14d 419 SUPERFAMILY SSF53720 3 414 1.83E-114 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM354_RS09760 3ad56a57b36828fc2936c8426010e14d 419 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 325 346 - T 29-03-2018 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AM354_RS09760 3ad56a57b36828fc2936c8426010e14d 419 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 3 418 40.876 T 29-03-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AM354_RS09760 3ad56a57b36828fc2936c8426010e14d 419 Gene3D G3DSA:3.40.605.10 234 419 1.1E-35 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM354_RS09760 3ad56a57b36828fc2936c8426010e14d 419 Pfam PF00171 Aldehyde dehydrogenase family 5 282 4.5E-14 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM354_RS02755 42865e67a5988b1711c46c92e105830b 405 Pfam PF00480 ROK family 94 389 8.8E-52 T 29-03-2018 IPR000600 ROK family Reactome: R-HSA-4085001 AM354_RS02755 42865e67a5988b1711c46c92e105830b 405 SUPERFAMILY SSF46785 12 77 2.83E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS02755 42865e67a5988b1711c46c92e105830b 405 Gene3D G3DSA:3.30.420.40 205 394 2.7E-39 T 29-03-2018 AM354_RS02755 42865e67a5988b1711c46c92e105830b 405 SUPERFAMILY SSF53067 87 394 2.94E-44 T 29-03-2018 AM354_RS02755 42865e67a5988b1711c46c92e105830b 405 Gene3D G3DSA:3.30.420.40 81 204 1.6E-17 T 29-03-2018 AM354_RS02755 42865e67a5988b1711c46c92e105830b 405 Gene3D G3DSA:1.10.10.10 11 80 1.8E-9 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS25080 1e001e6b6dc2acbeccc8c15e42104526 160 Pfam PF05638 Type VI secretion system effector, Hcp 6 131 5.5E-38 T 29-03-2018 IPR008514 Type VI secretion system effector, Hcp AM354_RS25080 1e001e6b6dc2acbeccc8c15e42104526 160 SUPERFAMILY SSF141452 2 158 4.32E-50 T 29-03-2018 IPR008514 Type VI secretion system effector, Hcp AM354_RS25080 1e001e6b6dc2acbeccc8c15e42104526 160 Gene3D G3DSA:2.30.110.20 1 156 6.9E-48 T 29-03-2018 IPR008514 Type VI secretion system effector, Hcp AM354_RS22115 7bb61d59600ec15c1f91f4ae515ba30a 183 SUPERFAMILY SSF46894 99 166 7.82E-10 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS22115 7bb61d59600ec15c1f91f4ae515ba30a 183 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 127 143 6.3E-5 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS22115 7bb61d59600ec15c1f91f4ae515ba30a 183 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 113 127 6.3E-5 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS22115 7bb61d59600ec15c1f91f4ae515ba30a 183 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 143 155 6.3E-5 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS22115 7bb61d59600ec15c1f91f4ae515ba30a 183 SMART SM00421 110 167 1.7E-4 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS22115 7bb61d59600ec15c1f91f4ae515ba30a 183 Gene3D G3DSA:1.10.10.10 107 173 1.2E-6 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS22115 7bb61d59600ec15c1f91f4ae515ba30a 183 Pfam PF00196 Bacterial regulatory proteins, luxR family 112 158 2.9E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS21820 8b7b0bacffc1f47878ba791102a780b5 1026 SUPERFAMILY SSF82714 183 265 6.28E-16 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS21820 8b7b0bacffc1f47878ba791102a780b5 1026 Gene3D G3DSA:3.30.70.1430 557 652 1.1E-12 T 29-03-2018 AM354_RS21820 8b7b0bacffc1f47878ba791102a780b5 1026 Gene3D G3DSA:3.30.2090.10 181 269 3.9E-14 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS21820 8b7b0bacffc1f47878ba791102a780b5 1026 SUPERFAMILY SSF82693 788 833 8.37E-6 T 29-03-2018 AM354_RS21820 8b7b0bacffc1f47878ba791102a780b5 1026 SUPERFAMILY SSF82693 665 701 8.37E-6 T 29-03-2018 AM354_RS21820 8b7b0bacffc1f47878ba791102a780b5 1026 Gene3D G3DSA:3.30.2090.10 701 788 1.3E-16 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS21820 8b7b0bacffc1f47878ba791102a780b5 1026 SUPERFAMILY SSF82693 555 650 8.89E-16 T 29-03-2018 AM354_RS21820 8b7b0bacffc1f47878ba791102a780b5 1026 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 5.9E-81 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS21820 8b7b0bacffc1f47878ba791102a780b5 1026 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 5.9E-81 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS21820 8b7b0bacffc1f47878ba791102a780b5 1026 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 5.9E-81 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS21820 8b7b0bacffc1f47878ba791102a780b5 1026 PRINTS PR00702 Acriflavin resistance protein family signature 605 619 5.9E-81 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS21820 8b7b0bacffc1f47878ba791102a780b5 1026 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 5.9E-81 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS21820 8b7b0bacffc1f47878ba791102a780b5 1026 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 5.9E-81 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS21820 8b7b0bacffc1f47878ba791102a780b5 1026 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 5.9E-81 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS21820 8b7b0bacffc1f47878ba791102a780b5 1026 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 5.9E-81 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS21820 8b7b0bacffc1f47878ba791102a780b5 1026 PRINTS PR00702 Acriflavin resistance protein family signature 542 559 5.9E-81 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS21820 8b7b0bacffc1f47878ba791102a780b5 1026 SUPERFAMILY SSF82693 136 182 1.91E-22 T 29-03-2018 AM354_RS21820 8b7b0bacffc1f47878ba791102a780b5 1026 SUPERFAMILY SSF82693 268 324 1.91E-22 T 29-03-2018 AM354_RS21820 8b7b0bacffc1f47878ba791102a780b5 1026 SUPERFAMILY SSF82866 812 1010 4.58E-42 T 29-03-2018 AM354_RS21820 8b7b0bacffc1f47878ba791102a780b5 1026 Pfam PF00873 AcrB/AcrD/AcrF family 4 1008 0.0 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS21820 8b7b0bacffc1f47878ba791102a780b5 1026 SUPERFAMILY SSF82693 40 135 6.02E-23 T 29-03-2018 AM354_RS21820 8b7b0bacffc1f47878ba791102a780b5 1026 Gene3D G3DSA:3.30.70.1430 40 142 5.2E-25 T 29-03-2018 AM354_RS21820 8b7b0bacffc1f47878ba791102a780b5 1026 SUPERFAMILY SSF82714 703 785 2.88E-16 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS21820 8b7b0bacffc1f47878ba791102a780b5 1026 Hamap MF_01424 Multidrug resistance protein MdtC [mdtC]. 1 1024 27.289 T 29-03-2018 IPR023931 Multidrug resistance protein MdtC AM354_RS21820 8b7b0bacffc1f47878ba791102a780b5 1026 Gene3D G3DSA:1.20.1640.10 801 1022 4.6E-35 T 29-03-2018 AM354_RS21820 8b7b0bacffc1f47878ba791102a780b5 1026 Gene3D G3DSA:1.20.1640.10 281 503 1.4E-47 T 29-03-2018 AM354_RS21820 8b7b0bacffc1f47878ba791102a780b5 1026 SUPERFAMILY SSF82866 290 491 2.75E-47 T 29-03-2018 AM354_RS12420 60b9681aab95c96a572dd3b9fa58808e 177 ProSitePatterns PS00213 Lipocalin signature. 34 45 - T 29-03-2018 IPR022272 Lipocalin family conserved site AM354_RS12420 60b9681aab95c96a572dd3b9fa58808e 177 PIRSF PIRSF036893 1 177 6.4E-47 T 29-03-2018 IPR022271 Lipocalin, ApoD type AM354_RS12420 60b9681aab95c96a572dd3b9fa58808e 177 Pfam PF08212 Lipocalin-like domain 34 173 1.4E-41 T 29-03-2018 IPR000566 Lipocalin/cytosolic fatty-acid binding domain AM354_RS12420 60b9681aab95c96a572dd3b9fa58808e 177 PRINTS PR01171 Bacterial lipocalin signature 69 78 1.6E-42 T 29-03-2018 IPR002446 Lipocalin, bacterial GO:0005215 AM354_RS12420 60b9681aab95c96a572dd3b9fa58808e 177 PRINTS PR01171 Bacterial lipocalin signature 120 128 1.6E-42 T 29-03-2018 IPR002446 Lipocalin, bacterial GO:0005215 AM354_RS12420 60b9681aab95c96a572dd3b9fa58808e 177 PRINTS PR01171 Bacterial lipocalin signature 103 117 1.6E-42 T 29-03-2018 IPR002446 Lipocalin, bacterial GO:0005215 AM354_RS12420 60b9681aab95c96a572dd3b9fa58808e 177 PRINTS PR01171 Bacterial lipocalin signature 162 172 1.6E-42 T 29-03-2018 IPR002446 Lipocalin, bacterial GO:0005215 AM354_RS12420 60b9681aab95c96a572dd3b9fa58808e 177 PRINTS PR01171 Bacterial lipocalin signature 33 47 1.6E-42 T 29-03-2018 IPR002446 Lipocalin, bacterial GO:0005215 AM354_RS12420 60b9681aab95c96a572dd3b9fa58808e 177 PRINTS PR01171 Bacterial lipocalin signature 135 146 1.6E-42 T 29-03-2018 IPR002446 Lipocalin, bacterial GO:0005215 AM354_RS12420 60b9681aab95c96a572dd3b9fa58808e 177 PRINTS PR01171 Bacterial lipocalin signature 50 66 1.6E-42 T 29-03-2018 IPR002446 Lipocalin, bacterial GO:0005215 AM354_RS12420 60b9681aab95c96a572dd3b9fa58808e 177 SUPERFAMILY SSF50814 11 173 2.12E-48 T 29-03-2018 IPR012674 Calycin AM354_RS12420 60b9681aab95c96a572dd3b9fa58808e 177 Gene3D G3DSA:2.40.128.20 2 174 2.8E-43 T 29-03-2018 IPR012674 Calycin AM354_RS21340 cba13fbdb8ba626dc0b211b5ca20df10 360 SUPERFAMILY SSF53822 75 340 3.53E-42 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS21340 cba13fbdb8ba626dc0b211b5ca20df10 360 Gene3D G3DSA:3.40.50.2300 68 170 2.8E-9 T 29-03-2018 AM354_RS21340 cba13fbdb8ba626dc0b211b5ca20df10 360 Gene3D G3DSA:1.10.260.40 19 67 1.2E-11 T 29-03-2018 AM354_RS21340 cba13fbdb8ba626dc0b211b5ca20df10 360 SUPERFAMILY SSF47413 4 58 5.96E-9 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS21340 cba13fbdb8ba626dc0b211b5ca20df10 360 Gene3D G3DSA:1.10.10.10 1 18 0.0088 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS21340 cba13fbdb8ba626dc0b211b5ca20df10 360 Gene3D G3DSA:3.40.50.2300 171 341 2.3E-33 T 29-03-2018 AM354_RS21340 cba13fbdb8ba626dc0b211b5ca20df10 360 SMART SM00354 4 54 0.0017 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS21340 cba13fbdb8ba626dc0b211b5ca20df10 360 Pfam PF13377 Periplasmic binding protein-like domain 173 338 3.0E-28 T 29-03-2018 AM354_RS21340 cba13fbdb8ba626dc0b211b5ca20df10 360 Pfam PF00356 Bacterial regulatory proteins, lacI family 6 45 3.9E-8 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS20415 4d5abd0ebcc98740d915fb018eba0883 512 Gene3D G3DSA:1.20.1250.20 10 200 1.4E-34 T 29-03-2018 AM354_RS20415 4d5abd0ebcc98740d915fb018eba0883 512 Pfam PF07690 Major Facilitator Superfamily 18 412 7.9E-54 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS20415 4d5abd0ebcc98740d915fb018eba0883 512 Gene3D G3DSA:1.20.1250.20 254 502 1.3E-32 T 29-03-2018 AM354_RS20415 4d5abd0ebcc98740d915fb018eba0883 512 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 14 495 1.2E-209 T 29-03-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 AM354_RS20415 4d5abd0ebcc98740d915fb018eba0883 512 PRINTS PR01036 Tetracycline resistance protein TetB signature 204 222 3.3E-6 T 29-03-2018 AM354_RS20415 4d5abd0ebcc98740d915fb018eba0883 512 PRINTS PR01036 Tetracycline resistance protein TetB signature 108 128 3.3E-6 T 29-03-2018 AM354_RS20415 4d5abd0ebcc98740d915fb018eba0883 512 PRINTS PR01036 Tetracycline resistance protein TetB signature 403 422 3.3E-6 T 29-03-2018 AM354_RS20415 4d5abd0ebcc98740d915fb018eba0883 512 PRINTS PR01036 Tetracycline resistance protein TetB signature 17 41 3.3E-6 T 29-03-2018 AM354_RS20415 4d5abd0ebcc98740d915fb018eba0883 512 PRINTS PR01036 Tetracycline resistance protein TetB signature 138 162 3.3E-6 T 29-03-2018 AM354_RS20415 4d5abd0ebcc98740d915fb018eba0883 512 SUPERFAMILY SSF103473 250 422 1.05E-72 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS20415 4d5abd0ebcc98740d915fb018eba0883 512 SUPERFAMILY SSF103473 474 499 1.05E-72 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS20415 4d5abd0ebcc98740d915fb018eba0883 512 SUPERFAMILY SSF103473 8 195 1.05E-72 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS15295 3a6a4829b3de6af16c159ef6518327bf 203 Gene3D G3DSA:2.60.40.1090 36 203 1.0E-22 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS15295 3a6a4829b3de6af16c159ef6518327bf 203 Pfam PF00419 Fimbrial protein 40 183 2.5E-7 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS15295 3a6a4829b3de6af16c159ef6518327bf 203 SUPERFAMILY SSF49401 37 202 1.29E-26 T 29-03-2018 IPR008966 Adhesion domain AM354_RS22630 e6072194aad29b40978e8c57b3a2bdb0 444 Pfam PF00535 Glycosyl transferase family 2 78 245 1.7E-32 T 29-03-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AM354_RS22630 e6072194aad29b40978e8c57b3a2bdb0 444 Gene3D G3DSA:3.90.550.10 50 334 5.4E-56 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS22630 e6072194aad29b40978e8c57b3a2bdb0 444 SUPERFAMILY SSF53448 59 339 7.16E-62 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS22630 e6072194aad29b40978e8c57b3a2bdb0 444 TIGRFAM TIGR03937 PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase 30 438 6.4E-192 T 29-03-2018 IPR023853 Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA GO:0008375|GO:0042710 AM354_RS03450 e2efa55b3b44682f693188ebe910a516 241 Pfam PF13618 Gluconate 2-dehydrogenase subunit 3 60 214 4.2E-39 T 29-03-2018 IPR027056 Gluconate 2-dehydrogenase subunit 3 KEGG: 00030+1.1.99.3|MetaCyc: PWY-7165 AM354_RS24770 596b545d18ad7310f90a5237ff950862 335 Gene3D G3DSA:3.40.50.720 144 319 1.1E-38 T 29-03-2018 AM354_RS24770 596b545d18ad7310f90a5237ff950862 335 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 38 115 1.8E-10 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AM354_RS24770 596b545d18ad7310f90a5237ff950862 335 Gene3D G3DSA:3.90.180.10 7 143 3.9E-45 T 29-03-2018 AM354_RS24770 596b545d18ad7310f90a5237ff950862 335 SUPERFAMILY SSF51735 121 297 2.67E-52 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS24770 596b545d18ad7310f90a5237ff950862 335 SMART SM00829 20 333 6.7E-58 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AM354_RS24770 596b545d18ad7310f90a5237ff950862 335 SUPERFAMILY SSF50129 11 150 4.41E-42 T 29-03-2018 IPR011032 GroES-like AM354_RS24770 596b545d18ad7310f90a5237ff950862 335 Pfam PF00107 Zinc-binding dehydrogenase 161 280 4.5E-27 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AM354_RS24770 596b545d18ad7310f90a5237ff950862 335 TIGRFAM TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family 11 334 1.1E-152 T 29-03-2018 IPR014189 Quinone oxidoreductase PIG3 Reactome: R-HSA-6803205 AM354_RS12280 9c3fab6fe0719eda8376021e50fe81f4 542 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 181 279 9.2E-14 T 29-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AM354_RS12280 9c3fab6fe0719eda8376021e50fe81f4 542 Gene3D G3DSA:2.40.110.10 179 278 5.8E-18 T 29-03-2018 AM354_RS12280 9c3fab6fe0719eda8376021e50fe81f4 542 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 402 421 - T 29-03-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AM354_RS12280 9c3fab6fe0719eda8376021e50fe81f4 542 SUPERFAMILY SSF56645 88 296 7.05E-30 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AM354_RS12280 9c3fab6fe0719eda8376021e50fe81f4 542 SUPERFAMILY SSF47203 287 447 1.61E-39 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AM354_RS12280 9c3fab6fe0719eda8376021e50fe81f4 542 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 289 443 2.2E-29 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AM354_RS12280 9c3fab6fe0719eda8376021e50fe81f4 542 Gene3D G3DSA:1.20.140.10 279 453 8.4E-35 T 29-03-2018 AM354_RS02965 92e32aac333e4f517f99167728ff12b6 126 SUPERFAMILY SSF54427 7 116 6.05E-31 T 29-03-2018 IPR032710 NTF2-like domain AM354_RS02965 92e32aac333e4f517f99167728ff12b6 126 Pfam PF12680 SnoaL-like domain 12 111 5.9E-15 T 29-03-2018 IPR009959 Polyketide cyclase SnoaL-like domain AM354_RS02965 92e32aac333e4f517f99167728ff12b6 126 PIRSF PIRSF030561 4 116 4.3E-38 T 29-03-2018 IPR008317 Uncharacterised conserved protein UCP030561 AM354_RS02965 92e32aac333e4f517f99167728ff12b6 126 Gene3D G3DSA:3.10.450.50 1 118 4.9E-18 T 29-03-2018 AM354_RS13435 c03bfe35074834b3bb5c8e072b53ef57 246 Pfam PF06564 Cellulose biosynthesis protein BcsQ 1 237 7.7E-105 T 29-03-2018 IPR017746 Cellulose synthase operon protein BcsQ AM354_RS13435 c03bfe35074834b3bb5c8e072b53ef57 246 SUPERFAMILY SSF52540 1 236 2.02E-27 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS13435 c03bfe35074834b3bb5c8e072b53ef57 246 TIGRFAM TIGR03371 cellulose_yhjQ: cellulose synthase operon protein YhjQ 1 240 5.5E-80 T 29-03-2018 IPR017746 Cellulose synthase operon protein BcsQ AM354_RS13435 c03bfe35074834b3bb5c8e072b53ef57 246 Gene3D G3DSA:3.40.50.300 2 239 1.1E-23 T 29-03-2018 AM354_RS17840 88f2b6c3415435ff22f3edfda21c0bdf 1048 SUPERFAMILY SSF82714 723 806 1.96E-16 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS17840 88f2b6c3415435ff22f3edfda21c0bdf 1048 Gene3D G3DSA:3.30.2090.10 723 809 5.7E-19 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS17840 88f2b6c3415435ff22f3edfda21c0bdf 1048 SUPERFAMILY SSF82714 185 269 2.88E-20 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS17840 88f2b6c3415435ff22f3edfda21c0bdf 1048 PRINTS PR00702 Acriflavin resistance protein family signature 334 357 3.2E-22 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS17840 88f2b6c3415435ff22f3edfda21c0bdf 1048 PRINTS PR00702 Acriflavin resistance protein family signature 389 413 3.2E-22 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS17840 88f2b6c3415435ff22f3edfda21c0bdf 1048 PRINTS PR00702 Acriflavin resistance protein family signature 552 569 3.2E-22 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS17840 88f2b6c3415435ff22f3edfda21c0bdf 1048 PRINTS PR00702 Acriflavin resistance protein family signature 12 36 3.2E-22 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS17840 88f2b6c3415435ff22f3edfda21c0bdf 1048 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 3.2E-22 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS17840 88f2b6c3415435ff22f3edfda21c0bdf 1048 PRINTS PR00702 Acriflavin resistance protein family signature 361 382 3.2E-22 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS17840 88f2b6c3415435ff22f3edfda21c0bdf 1048 Pfam PF00873 AcrB/AcrD/AcrF family 6 1038 5.8E-238 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS17840 88f2b6c3415435ff22f3edfda21c0bdf 1048 SUPERFAMILY SSF82866 294 505 7.46E-40 T 29-03-2018 AM354_RS17840 88f2b6c3415435ff22f3edfda21c0bdf 1048 Gene3D G3DSA:3.30.70.1430 567 665 9.5E-9 T 29-03-2018 AM354_RS17840 88f2b6c3415435ff22f3edfda21c0bdf 1048 SUPERFAMILY SSF82866 805 1044 7.19E-44 T 29-03-2018 AM354_RS17840 88f2b6c3415435ff22f3edfda21c0bdf 1048 SUPERFAMILY SSF82693 46 127 2.14E-20 T 29-03-2018 AM354_RS17840 88f2b6c3415435ff22f3edfda21c0bdf 1048 Gene3D G3DSA:3.30.70.1430 45 140 3.6E-21 T 29-03-2018 AM354_RS17840 88f2b6c3415435ff22f3edfda21c0bdf 1048 Gene3D G3DSA:1.20.1640.10 823 1047 2.7E-29 T 29-03-2018 AM354_RS17840 88f2b6c3415435ff22f3edfda21c0bdf 1048 Gene3D G3DSA:1.20.1640.10 287 517 2.0E-43 T 29-03-2018 AM354_RS17840 88f2b6c3415435ff22f3edfda21c0bdf 1048 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 1 1046 0.0 T 29-03-2018 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 AM354_RS17840 88f2b6c3415435ff22f3edfda21c0bdf 1048 Gene3D G3DSA:3.30.2090.10 183 271 5.3E-19 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS17840 88f2b6c3415435ff22f3edfda21c0bdf 1048 SUPERFAMILY SSF82693 138 184 5.75E-21 T 29-03-2018 AM354_RS17840 88f2b6c3415435ff22f3edfda21c0bdf 1048 SUPERFAMILY SSF82693 271 328 5.75E-21 T 29-03-2018 AM354_RS08190 aa5f5706ca5f262b50f41c285a8d299f 467 SUPERFAMILY SSF56935 86 261 8.47E-5 T 29-03-2018 AM354_RS08190 aa5f5706ca5f262b50f41c285a8d299f 467 Gene3D G3DSA:2.40.160.10 2 467 6.2E-97 T 29-03-2018 AM354_RS08190 aa5f5706ca5f262b50f41c285a8d299f 467 Pfam PF03573 outer membrane porin, OprD family 33 435 3.6E-22 T 29-03-2018 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 AM354_RS04525 b941ef1f189f5d98febfef0245e34a88 254 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 250 5.3E-66 T 29-03-2018 AM354_RS04525 b941ef1f189f5d98febfef0245e34a88 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 233 1.4E-37 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS04525 b941ef1f189f5d98febfef0245e34a88 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 1.4E-37 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS04525 b941ef1f189f5d98febfef0245e34a88 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 1.4E-37 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS04525 b941ef1f189f5d98febfef0245e34a88 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 1.4E-37 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS04525 b941ef1f189f5d98febfef0245e34a88 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.4E-37 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS04525 b941ef1f189f5d98febfef0245e34a88 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 1.4E-37 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS04525 b941ef1f189f5d98febfef0245e34a88 254 Gene3D G3DSA:3.40.50.720 1 40 2.1E-8 T 29-03-2018 AM354_RS04525 b941ef1f189f5d98febfef0245e34a88 254 Gene3D G3DSA:3.40.50.720 41 254 1.1E-59 T 29-03-2018 AM354_RS04525 b941ef1f189f5d98febfef0245e34a88 254 SUPERFAMILY SSF51735 5 251 3.49E-76 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS04525 b941ef1f189f5d98febfef0245e34a88 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 1.4E-6 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS04525 b941ef1f189f5d98febfef0245e34a88 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 1.4E-6 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS19480 d68ae8153704f185123f0a2fd63357e1 176 SUPERFAMILY SSF55729 42 158 2.06E-17 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS19480 d68ae8153704f185123f0a2fd63357e1 176 Pfam PF00583 Acetyltransferase (GNAT) family 52 148 6.6E-10 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS19480 d68ae8153704f185123f0a2fd63357e1 176 Gene3D G3DSA:3.40.630.30 7 172 2.8E-17 T 29-03-2018 AM354_RS04785 3b8c18bc8b7ef756dc0737fb1b64c6d4 477 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 378 460 1.1E-25 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM354_RS04785 3b8c18bc8b7ef756dc0737fb1b64c6d4 477 SUPERFAMILY SSF55604 401 474 1.57E-20 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM354_RS04785 3b8c18bc8b7ef756dc0737fb1b64c6d4 477 TIGRFAM TIGR00852 pts-Glc: PTS system, maltose and glucose-specific subfamily, IIC component 52 331 1.9E-88 T 29-03-2018 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component GO:0008982|GO:0009401|GO:0016021 AM354_RS04785 3b8c18bc8b7ef756dc0737fb1b64c6d4 477 Gene3D G3DSA:3.30.1360.60 399 474 2.6E-27 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM354_RS04785 3b8c18bc8b7ef756dc0737fb1b64c6d4 477 TIGRFAM TIGR02002 PTS-II-BC-glcB: PTS system, glucose-specific IIBC component 2 475 2.3E-230 T 29-03-2018 IPR011299 PTS system glucose-specific IIBC component GO:0005355|GO:0015758|GO:0016021 AM354_RS04785 3b8c18bc8b7ef756dc0737fb1b64c6d4 477 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 414 431 - T 29-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AM354_RS04785 3b8c18bc8b7ef756dc0737fb1b64c6d4 477 Pfam PF02378 Phosphotransferase system, EIIC 13 320 3.8E-82 T 29-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AM354_RS04785 3b8c18bc8b7ef756dc0737fb1b64c6d4 477 Pfam PF00367 phosphotransferase system, EIIB 405 436 5.0E-14 T 29-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AM354_RS09450 8ace07384278bb53374c48335c21a58f 185 Pfam PF00398 Ribosomal RNA adenine dimethylase 35 172 5.5E-5 T 29-03-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm AM354_RS09450 8ace07384278bb53374c48335c21a58f 185 SUPERFAMILY SSF53335 15 165 3.41E-13 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS09450 8ace07384278bb53374c48335c21a58f 185 Gene3D G3DSA:3.40.50.150 6 179 1.9E-13 T 29-03-2018 AM354_RS22225 f64f5abda1225e10f1d9ca404f8f010b 279 PIRSF PIRSF020419 1 279 3.7E-90 T 29-03-2018 IPR016773 Ferric uptake regulator, CjrA, predicted AM354_RS22225 f64f5abda1225e10f1d9ca404f8f010b 279 SUPERFAMILY SSF159501 29 276 3.66E-65 T 29-03-2018 AM354_RS22225 f64f5abda1225e10f1d9ca404f8f010b 279 Pfam PF04187 Haem-binding uptake, Tiki superfamily, ChaN 47 243 2.2E-37 T 29-03-2018 IPR007314 Haem-binding uptake, Tiki superfamily, ChaN AM354_RS06895 4ca0f6784b8bb9efddd0a333fa7b1ce0 209 Pfam PF01810 LysE type translocator 16 206 1.2E-31 T 29-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AM354_RS06895 4ca0f6784b8bb9efddd0a333fa7b1ce0 209 PIRSF PIRSF006324 1 208 4.6E-50 T 29-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AM354_RS03770 b4a250b63c21766d1839989dc58b9e5b 426 Pfam PF01266 FAD dependent oxidoreductase 29 381 2.5E-54 T 29-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AM354_RS03770 b4a250b63c21766d1839989dc58b9e5b 426 SUPERFAMILY SSF51905 27 329 9.06E-41 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS03770 b4a250b63c21766d1839989dc58b9e5b 426 Gene3D G3DSA:3.50.50.60 17 397 1.3E-39 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS03770 b4a250b63c21766d1839989dc58b9e5b 426 PRINTS PR00757 Flavin-containing amine oxidase signature 29 48 4.0E-5 T 29-03-2018 IPR001613 Flavin amine oxidase GO:0016491|GO:0055114 AM354_RS03770 b4a250b63c21766d1839989dc58b9e5b 426 PRINTS PR00757 Flavin-containing amine oxidase signature 216 238 4.0E-5 T 29-03-2018 IPR001613 Flavin amine oxidase GO:0016491|GO:0055114 AM354_RS01145 955a40b39d6854438f434e3d57d8b009 389 Gene3D G3DSA:3.40.710.10 18 282 6.7E-47 T 29-03-2018 AM354_RS01145 955a40b39d6854438f434e3d57d8b009 389 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 31 263 8.9E-92 T 29-03-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 AM354_RS01145 955a40b39d6854438f434e3d57d8b009 389 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 149 162 9.7E-17 T 29-03-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AM354_RS01145 955a40b39d6854438f434e3d57d8b009 389 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 63 74 9.7E-17 T 29-03-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AM354_RS01145 955a40b39d6854438f434e3d57d8b009 389 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 122 139 9.7E-17 T 29-03-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AM354_RS01145 955a40b39d6854438f434e3d57d8b009 389 SUPERFAMILY SSF69189 283 376 6.47E-22 T 29-03-2018 IPR015956 Penicillin-binding protein-associated GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM354_RS01145 955a40b39d6854438f434e3d57d8b009 389 Gene3D G3DSA:2.60.410.10 283 374 7.3E-20 T 29-03-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM354_RS01145 955a40b39d6854438f434e3d57d8b009 389 SUPERFAMILY SSF56601 13 283 1.08E-74 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM354_RS01145 955a40b39d6854438f434e3d57d8b009 389 SMART SM00936 283 374 6.6E-30 T 29-03-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM354_RS01145 955a40b39d6854438f434e3d57d8b009 389 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 283 373 1.2E-20 T 29-03-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM354_RS01535 5e88686033e37c5fad6544a7dbc4e43f 141 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 29-03-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AM354_RS01535 5e88686033e37c5fad6544a7dbc4e43f 141 SUPERFAMILY SSF55811 2 134 3.38E-28 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 AM354_RS01535 5e88686033e37c5fad6544a7dbc4e43f 141 PRINTS PR00502 NUDIX hydrolase family signature 47 62 1.5E-6 T 29-03-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AM354_RS01535 5e88686033e37c5fad6544a7dbc4e43f 141 PRINTS PR00502 NUDIX hydrolase family signature 33 47 1.5E-6 T 29-03-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AM354_RS01535 5e88686033e37c5fad6544a7dbc4e43f 141 Gene3D G3DSA:3.90.79.10 1 141 2.5E-29 T 29-03-2018 AM354_RS01535 5e88686033e37c5fad6544a7dbc4e43f 141 Pfam PF00293 NUDIX domain 2 128 9.1E-20 T 29-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AM354_RS18565 193d9f3f2cd1a9a247827769cfb1f564 118 Pfam PF07883 Cupin domain 36 105 8.3E-13 T 29-03-2018 IPR013096 Cupin 2, conserved barrel AM354_RS18565 193d9f3f2cd1a9a247827769cfb1f564 118 SUPERFAMILY SSF51182 24 113 2.15E-18 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS18565 193d9f3f2cd1a9a247827769cfb1f564 118 Gene3D G3DSA:2.60.120.10 2 118 1.0E-17 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS19615 1fedaa91bfdedb80cc2aaacaffc95729 472 SMART SM00304 204 255 0.0026 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM354_RS19615 1fedaa91bfdedb80cc2aaacaffc95729 472 SUPERFAMILY SSF103190 67 178 1.88E-13 T 29-03-2018 IPR029151 Periplasmic sensor domain-like AM354_RS19615 1fedaa91bfdedb80cc2aaacaffc95729 472 SMART SM00387 364 472 8.5E-25 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS19615 1fedaa91bfdedb80cc2aaacaffc95729 472 Pfam PF00672 HAMP domain 204 251 3.6E-6 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM354_RS19615 1fedaa91bfdedb80cc2aaacaffc95729 472 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 365 470 1.1E-15 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS19615 1fedaa91bfdedb80cc2aaacaffc95729 472 SUPERFAMILY SSF55874 310 470 1.7E-34 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS19615 1fedaa91bfdedb80cc2aaacaffc95729 472 SMART SM00388 255 320 3.7E-14 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS19615 1fedaa91bfdedb80cc2aaacaffc95729 472 Gene3D G3DSA:3.30.565.10 315 472 2.9E-34 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS19615 1fedaa91bfdedb80cc2aaacaffc95729 472 Pfam PF14827 Double sensory domain of two-component sensor kinase 48 169 7.8E-7 T 29-03-2018 IPR029150 Double Cache domain 3 AM354_RS19615 1fedaa91bfdedb80cc2aaacaffc95729 472 Gene3D G3DSA:3.30.450.20 28 177 7.7E-29 T 29-03-2018 AM354_RS19615 1fedaa91bfdedb80cc2aaacaffc95729 472 SUPERFAMILY SSF47384 253 319 2.55E-14 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS19615 1fedaa91bfdedb80cc2aaacaffc95729 472 Gene3D G3DSA:1.10.287.130 235 314 9.6E-13 T 29-03-2018 AM354_RS19615 1fedaa91bfdedb80cc2aaacaffc95729 472 Pfam PF00512 His Kinase A (phospho-acceptor) domain 260 319 2.6E-13 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS19615 1fedaa91bfdedb80cc2aaacaffc95729 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 434 452 6.0E-6 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS19615 1fedaa91bfdedb80cc2aaacaffc95729 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 419 429 6.0E-6 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS19615 1fedaa91bfdedb80cc2aaacaffc95729 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 401 415 6.0E-6 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS23520 80fe8b3bbe2e7f9b024a020edd1c4ef8 585 Gene3D G3DSA:3.40.50.300 1 164 6.2E-29 T 29-03-2018 AM354_RS23520 80fe8b3bbe2e7f9b024a020edd1c4ef8 585 Gene3D G3DSA:3.40.50.300 227 359 2.5E-19 T 29-03-2018 AM354_RS23520 80fe8b3bbe2e7f9b024a020edd1c4ef8 585 SMART SM00487 1 185 3.9E-18 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AM354_RS23520 80fe8b3bbe2e7f9b024a020edd1c4ef8 585 Pfam PF04851 Type III restriction enzyme, res subunit 3 155 1.7E-25 T 29-03-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AM354_RS23520 80fe8b3bbe2e7f9b024a020edd1c4ef8 585 Pfam PF00271 Helicase conserved C-terminal domain 241 343 2.5E-12 T 29-03-2018 IPR001650 Helicase, C-terminal AM354_RS23520 80fe8b3bbe2e7f9b024a020edd1c4ef8 585 SUPERFAMILY SSF57829 422 467 1.34E-7 T 29-03-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 AM354_RS23520 80fe8b3bbe2e7f9b024a020edd1c4ef8 585 SMART SM00490 262 345 2.3E-9 T 29-03-2018 IPR001650 Helicase, C-terminal AM354_RS23520 80fe8b3bbe2e7f9b024a020edd1c4ef8 585 SUPERFAMILY SSF52540 237 358 1.35E-36 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS23520 80fe8b3bbe2e7f9b024a020edd1c4ef8 585 SUPERFAMILY SSF52540 50 189 1.35E-36 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS09250 7a2caab1221af54ebf2a795014d00f9b 193 Pfam PF04336 Acyl carrier protein phosphodiesterase 81 185 7.9E-34 T 29-03-2018 IPR007431 Acyl carrier protein phosphodiesterase GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 AM354_RS09250 7a2caab1221af54ebf2a795014d00f9b 193 PIRSF PIRSF011489 1 193 1.3E-78 T 29-03-2018 IPR007431 Acyl carrier protein phosphodiesterase GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 AM354_RS09250 7a2caab1221af54ebf2a795014d00f9b 193 Hamap MF_01950 Acyl carrier protein phosphodiesterase [acpH]. 1 193 52.78 T 29-03-2018 IPR023491 Acyl carrier protein phosphodiesterase, gammaproteobacteria GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 AM354_RS03550 21971bcd5862aa3fe53fd3243dab8bad 263 Pfam PF09339 IclR helix-turn-helix domain 15 65 6.0E-14 T 29-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AM354_RS03550 21971bcd5862aa3fe53fd3243dab8bad 263 Gene3D G3DSA:1.10.10.10 11 99 3.3E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS03550 21971bcd5862aa3fe53fd3243dab8bad 263 SMART SM00346 13 102 1.1E-34 T 29-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AM354_RS03550 21971bcd5862aa3fe53fd3243dab8bad 263 SUPERFAMILY SSF46785 13 85 2.77E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS03550 21971bcd5862aa3fe53fd3243dab8bad 263 Gene3D G3DSA:3.30.450.40 100 263 5.3E-54 T 29-03-2018 IPR029016 GAF domain-like AM354_RS03550 21971bcd5862aa3fe53fd3243dab8bad 263 Pfam PF01614 Bacterial transcriptional regulator 129 254 2.5E-43 T 29-03-2018 IPR014757 Transcription regulator IclR, C-terminal AM354_RS03550 21971bcd5862aa3fe53fd3243dab8bad 263 SUPERFAMILY SSF55781 77 259 1.24E-53 T 29-03-2018 IPR029016 GAF domain-like AM354_RS22165 5604810a8ed5690a8d9b18cda6f85ca3 316 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 13 311 2.1E-100 T 29-03-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-71336 AM354_RS22165 5604810a8ed5690a8d9b18cda6f85ca3 316 Hamap MF_00492 Transaldolase [tal]. 1 316 52.1 T 29-03-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-71336 AM354_RS22165 5604810a8ed5690a8d9b18cda6f85ca3 316 Gene3D G3DSA:3.20.20.70 1 316 1.0E-118 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS22165 5604810a8ed5690a8d9b18cda6f85ca3 316 ProSitePatterns PS01054 Transaldolase signature 1. 30 38 - T 29-03-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-71336 AM354_RS22165 5604810a8ed5690a8d9b18cda6f85ca3 316 TIGRFAM TIGR00874 talAB: transaldolase 2 315 5.5E-157 T 29-03-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-71336 AM354_RS22165 5604810a8ed5690a8d9b18cda6f85ca3 316 ProSitePatterns PS00958 Transaldolase active site. 128 145 - T 29-03-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-71336 AM354_RS22165 5604810a8ed5690a8d9b18cda6f85ca3 316 SUPERFAMILY SSF51569 1 314 6.28E-114 T 29-03-2018 AM354_RS07235 2aff74b34ed66933d426f9772ca058be 222 SUPERFAMILY SSF161098 13 209 1.7E-44 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS07235 2aff74b34ed66933d426f9772ca058be 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 36 222 6.8E-22 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS07235 2aff74b34ed66933d426f9772ca058be 222 Gene3D G3DSA:1.10.3720.10 8 222 2.3E-39 T 29-03-2018 AM354_RS02640 3311a6f9c2ccf8032ce8781c1cfca8db 250 PIRSF PIRSF015736 1 250 9.9E-68 T 29-03-2018 IPR026286 Maleate isomerase/Arylmalonate decarboxylase AM354_RS02640 3311a6f9c2ccf8032ce8781c1cfca8db 250 Hamap MF_00943 Maleate isomerase [maiA]. 5 250 50.619 T 29-03-2018 IPR028615 Maleate isomerase GO:0050076 KEGG: 00650+5.2.1.1|KEGG: 00760+5.2.1.1|MetaCyc: PWY-5033|MetaCyc: PWY-6993|MetaCyc: PWY-7128|MetaCyc: PWY-722 AM354_RS02640 3311a6f9c2ccf8032ce8781c1cfca8db 250 Gene3D G3DSA:3.40.50.1860 122 220 0.0012 T 29-03-2018 AM354_RS13785 54f5a53f69ded680826ea81259ba6416 325 SUPERFAMILY SSF51735 100 288 4.64E-59 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS13785 54f5a53f69ded680826ea81259ba6416 325 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 108 287 3.4E-62 T 29-03-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AM354_RS13785 54f5a53f69ded680826ea81259ba6416 325 Gene3D G3DSA:3.40.50.720 114 290 5.5E-57 T 29-03-2018 AM354_RS13785 54f5a53f69ded680826ea81259ba6416 325 Hamap MF_01667 Glyoxylate/hydroxypyruvate reductase B [ghrB]. 1 324 68.596 T 29-03-2018 IPR023756 Glyoxylate/hydroxypyruvate reductase B GO:0016618|GO:0030267|GO:0055114 KEGG: 00260+1.1.1.81|KEGG: 00620+1.1.1.79|KEGG: 00630+1.1.1.79+1.1.1.81|MetaCyc: PWY-1622 AM354_RS13785 54f5a53f69ded680826ea81259ba6416 325 SUPERFAMILY SSF52283 1 134 1.36E-29 T 29-03-2018 AM354_RS13785 54f5a53f69ded680826ea81259ba6416 325 Gene3D G3DSA:3.40.50.720 1 113 1.0E-28 T 29-03-2018 AM354_RS13785 54f5a53f69ded680826ea81259ba6416 325 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 5 319 6.1E-28 T 29-03-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 AM354_RS13785 54f5a53f69ded680826ea81259ba6416 325 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 226 242 - T 29-03-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AM354_RS05300 9c90edba78d4bcfea8c35ea5ad33fd29 266 SMART SM00892 45 246 1.5E-43 T 29-03-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 AM354_RS05300 9c90edba78d4bcfea8c35ea5ad33fd29 266 SUPERFAMILY SSF54060 28 265 4.83E-59 T 29-03-2018 AM354_RS05300 9c90edba78d4bcfea8c35ea5ad33fd29 266 Gene3D G3DSA:3.40.570.10 22 266 9.4E-52 T 29-03-2018 AM354_RS05300 9c90edba78d4bcfea8c35ea5ad33fd29 266 SMART SM00477 46 246 8.5E-78 T 29-03-2018 IPR020821 Extracellular Endonuclease, subunit A GO:0003676|GO:0016787|GO:0046872 AM354_RS05300 9c90edba78d4bcfea8c35ea5ad33fd29 266 ProSitePatterns PS01070 DNA/RNA non-specific endonucleases active site. 107 115 - T 29-03-2018 IPR018524 DNA/RNA non-specific endonuclease, active site GO:0003676|GO:0016787|GO:0046872 AM354_RS05300 9c90edba78d4bcfea8c35ea5ad33fd29 266 Pfam PF01223 DNA/RNA non-specific endonuclease 28 245 8.3E-46 T 29-03-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 AM354_RS15535 b7570060a5e7e31671ee9cedf85ed478 155 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 7 149 1.0E-30 T 29-03-2018 IPR002178 PTS EIIA type-2 domain AM354_RS15535 b7570060a5e7e31671ee9cedf85ed478 155 Gene3D G3DSA:3.40.930.10 2 151 7.3E-33 T 29-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 AM354_RS15535 b7570060a5e7e31671ee9cedf85ed478 155 SUPERFAMILY SSF55804 6 149 1.24E-34 T 29-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 AM354_RS14430 33328396bb28b1439573b8d35f235bdf 444 SUPERFAMILY SSF51261 268 442 1.83E-45 T 29-03-2018 IPR011055 Duplicated hybrid motif AM354_RS14430 33328396bb28b1439573b8d35f235bdf 444 Gene3D G3DSA:2.70.70.10 207 444 1.3E-33 T 29-03-2018 AM354_RS14430 33328396bb28b1439573b8d35f235bdf 444 Pfam PF01551 Peptidase family M23 345 438 6.9E-25 T 29-03-2018 IPR016047 Peptidase M23 AM354_RS14430 33328396bb28b1439573b8d35f235bdf 444 Gene3D G3DSA:1.20.5.730 56 141 1.3E-6 T 29-03-2018 AM354_RS14455 6c3a4b81f1e2393490ad87d5506ff660 339 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 8 163 5.7E-50 T 29-03-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 AM354_RS14455 6c3a4b81f1e2393490ad87d5506ff660 339 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 192 213 - T 29-03-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 AM354_RS14455 6c3a4b81f1e2393490ad87d5506ff660 339 SUPERFAMILY SSF48179 184 335 9.64E-58 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM354_RS14455 6c3a4b81f1e2393490ad87d5506ff660 339 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 184 323 1.7E-53 T 29-03-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 AM354_RS14455 6c3a4b81f1e2393490ad87d5506ff660 339 PIRSF PIRSF000114 1 336 4.9E-100 T 29-03-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 AM354_RS14455 6c3a4b81f1e2393490ad87d5506ff660 339 SUPERFAMILY SSF51735 8 182 1.52E-52 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS14455 6c3a4b81f1e2393490ad87d5506ff660 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 60 87 2.8E-42 T 29-03-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 AM354_RS14455 6c3a4b81f1e2393490ad87d5506ff660 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 136 156 2.8E-42 T 29-03-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 AM354_RS14455 6c3a4b81f1e2393490ad87d5506ff660 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 202 226 2.8E-42 T 29-03-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 AM354_RS14455 6c3a4b81f1e2393490ad87d5506ff660 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 10 27 2.8E-42 T 29-03-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 AM354_RS14455 6c3a4b81f1e2393490ad87d5506ff660 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 177 201 2.8E-42 T 29-03-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 AM354_RS14455 6c3a4b81f1e2393490ad87d5506ff660 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 242 259 2.8E-42 T 29-03-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 AM354_RS14455 6c3a4b81f1e2393490ad87d5506ff660 339 Gene3D G3DSA:3.40.50.720 1 181 1.8E-39 T 29-03-2018 AM354_RS14455 6c3a4b81f1e2393490ad87d5506ff660 339 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 6 326 38.196 T 29-03-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 AM354_RS14455 6c3a4b81f1e2393490ad87d5506ff660 339 Gene3D G3DSA:1.10.1040.10 193 339 1.0E-54 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM354_RS07045 737409d85b4cf8d0937eb6e444c806bc 303 SUPERFAMILY SSF53850 90 295 1.65E-27 T 29-03-2018 AM354_RS07045 737409d85b4cf8d0937eb6e444c806bc 303 Pfam PF03466 LysR substrate binding domain 90 292 1.6E-23 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS07045 737409d85b4cf8d0937eb6e444c806bc 303 Gene3D G3DSA:3.40.190.10 181 264 1.1E-9 T 29-03-2018 AM354_RS07045 737409d85b4cf8d0937eb6e444c806bc 303 Gene3D G3DSA:1.10.10.10 2 90 3.3E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS07045 737409d85b4cf8d0937eb6e444c806bc 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.3E-15 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS07045 737409d85b4cf8d0937eb6e444c806bc 303 SUPERFAMILY SSF46785 3 89 1.42E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS07045 737409d85b4cf8d0937eb6e444c806bc 303 Gene3D G3DSA:3.40.190.10 91 180 1.4E-11 T 29-03-2018 AM354_RS21825 83d97f4dc6739a81bd280145683d4b51 1039 Gene3D G3DSA:3.30.70.1430 567 666 2.6E-15 T 29-03-2018 AM354_RS21825 83d97f4dc6739a81bd280145683d4b51 1039 Gene3D G3DSA:3.30.2090.10 190 275 2.2E-16 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS21825 83d97f4dc6739a81bd280145683d4b51 1039 Gene3D G3DSA:3.30.2090.10 717 802 2.0E-18 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS21825 83d97f4dc6739a81bd280145683d4b51 1039 Gene3D G3DSA:1.20.1640.10 276 501 2.4E-43 T 29-03-2018 AM354_RS21825 83d97f4dc6739a81bd280145683d4b51 1039 SUPERFAMILY SSF82866 799 1025 3.92E-45 T 29-03-2018 AM354_RS21825 83d97f4dc6739a81bd280145683d4b51 1039 Gene3D G3DSA:1.20.1640.10 815 1036 1.4E-35 T 29-03-2018 AM354_RS21825 83d97f4dc6739a81bd280145683d4b51 1039 PRINTS PR00702 Acriflavin resistance protein family signature 394 418 2.7E-82 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS21825 83d97f4dc6739a81bd280145683d4b51 1039 PRINTS PR00702 Acriflavin resistance protein family signature 339 362 2.7E-82 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS21825 83d97f4dc6739a81bd280145683d4b51 1039 PRINTS PR00702 Acriflavin resistance protein family signature 366 387 2.7E-82 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS21825 83d97f4dc6739a81bd280145683d4b51 1039 PRINTS PR00702 Acriflavin resistance protein family signature 47 65 2.7E-82 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS21825 83d97f4dc6739a81bd280145683d4b51 1039 PRINTS PR00702 Acriflavin resistance protein family signature 19 43 2.7E-82 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS21825 83d97f4dc6739a81bd280145683d4b51 1039 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 2.7E-82 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS21825 83d97f4dc6739a81bd280145683d4b51 1039 PRINTS PR00702 Acriflavin resistance protein family signature 619 633 2.7E-82 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS21825 83d97f4dc6739a81bd280145683d4b51 1039 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 2.7E-82 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS21825 83d97f4dc6739a81bd280145683d4b51 1039 PRINTS PR00702 Acriflavin resistance protein family signature 552 569 2.7E-82 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS21825 83d97f4dc6739a81bd280145683d4b51 1039 SUPERFAMILY SSF82693 146 191 5.76E-21 T 29-03-2018 AM354_RS21825 83d97f4dc6739a81bd280145683d4b51 1039 SUPERFAMILY SSF82693 277 333 5.76E-21 T 29-03-2018 AM354_RS21825 83d97f4dc6739a81bd280145683d4b51 1039 Gene3D G3DSA:3.30.70.1430 49 150 8.4E-23 T 29-03-2018 AM354_RS21825 83d97f4dc6739a81bd280145683d4b51 1039 SUPERFAMILY SSF82866 299 498 1.7E-45 T 29-03-2018 AM354_RS21825 83d97f4dc6739a81bd280145683d4b51 1039 Hamap MF_01423 Multidrug resistance protein MdtB [mdtB]. 1 1036 34.905 T 29-03-2018 IPR022831 Multidrug resistance protein MdtB AM354_RS21825 83d97f4dc6739a81bd280145683d4b51 1039 SUPERFAMILY SSF82714 192 275 1.23E-16 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS21825 83d97f4dc6739a81bd280145683d4b51 1039 SUPERFAMILY SSF82693 49 142 3.14E-22 T 29-03-2018 AM354_RS21825 83d97f4dc6739a81bd280145683d4b51 1039 SUPERFAMILY SSF82693 565 662 7.59E-17 T 29-03-2018 AM354_RS21825 83d97f4dc6739a81bd280145683d4b51 1039 SUPERFAMILY SSF82714 719 802 3.53E-17 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM354_RS21825 83d97f4dc6739a81bd280145683d4b51 1039 Pfam PF00873 AcrB/AcrD/AcrF family 13 1022 0.0 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM354_RS14735 5e27727be98b299b5df151328cb1d965 275 SUPERFAMILY SSF53850 90 269 4.5E-22 T 29-03-2018 AM354_RS14735 5e27727be98b299b5df151328cb1d965 275 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.3E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS14735 5e27727be98b299b5df151328cb1d965 275 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.3E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS14735 5e27727be98b299b5df151328cb1d965 275 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.3E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS14735 5e27727be98b299b5df151328cb1d965 275 Gene3D G3DSA:1.10.10.10 1 83 2.2E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS14735 5e27727be98b299b5df151328cb1d965 275 Gene3D G3DSA:3.40.190.10 86 219 1.2E-14 T 29-03-2018 AM354_RS14735 5e27727be98b299b5df151328cb1d965 275 SUPERFAMILY SSF46785 2 81 2.87E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS14735 5e27727be98b299b5df151328cb1d965 275 Hamap MF_01233 HTH-type transcriptional regulator HdfR [hdfR]. 1 272 52.089 T 29-03-2018 IPR020890 Transcription regulator HTH, HdfR GO:0003677|GO:0003700|GO:0045892 AM354_RS14735 5e27727be98b299b5df151328cb1d965 275 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 2.1E-20 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS14735 5e27727be98b299b5df151328cb1d965 275 Pfam PF03466 LysR substrate binding domain 88 268 2.4E-21 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS07250 ce4d40aea7841a0b273d663adec9bbd9 85 Pfam PF07338 Protein of unknown function (DUF1471) 34 84 9.5E-19 T 29-03-2018 IPR010854 Domain of unknown function DUF1471 AM354_RS07250 ce4d40aea7841a0b273d663adec9bbd9 85 SUPERFAMILY SSF159871 3 85 5.62E-24 T 29-03-2018 IPR010854 Domain of unknown function DUF1471 AM354_RS07250 ce4d40aea7841a0b273d663adec9bbd9 85 Gene3D G3DSA:3.30.1660.10 21 85 1.6E-22 T 29-03-2018 IPR025543 Dodecin-like AM354_RS20810 d5d320c9b0e74856341531af292fb37d 150 Pfam PF05926 Phage head completion protein (GPL) 14 150 2.7E-40 T 29-03-2018 IPR009225 Bacteriophage head completion protein GpL GO:0019069 AM354_RS00805 959da90f55859ec049c4f60068af408a 146 Pfam PF03692 Putative zinc- or iron-chelating domain 7 98 4.1E-11 T 29-03-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein AM354_RS25000 a6f19f24318b8cb0a34e5b3d71da5cad 155 Gene3D G3DSA:3.20.80.10 1 155 3.5E-28 T 29-03-2018 IPR011256 Regulatory factor, effector binding domain AM354_RS25000 a6f19f24318b8cb0a34e5b3d71da5cad 155 Hamap MF_01896 DNA gyrase inhibitor [sbmC]. 1 155 37.656 T 29-03-2018 IPR024911 DNA gyrase inhibitor GyrI GO:0008657 AM354_RS25000 a6f19f24318b8cb0a34e5b3d71da5cad 155 SMART SM00871 1 153 2.2E-34 T 29-03-2018 IPR010499 Bacterial transcription activator, effector binding AM354_RS25000 a6f19f24318b8cb0a34e5b3d71da5cad 155 SUPERFAMILY SSF55136 1 154 7.5E-40 T 29-03-2018 AM354_RS25000 a6f19f24318b8cb0a34e5b3d71da5cad 155 Pfam PF06445 GyrI-like small molecule binding domain 1 149 1.2E-27 T 29-03-2018 IPR029442 GyrI-like small molecule binding domain AM354_RS06545 f6230e157506de95f71001554dd26b51 156 PRINTS PR01693 Cyanase signature 91 105 4.5E-32 T 29-03-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AM354_RS06545 f6230e157506de95f71001554dd26b51 156 PRINTS PR01693 Cyanase signature 141 151 4.5E-32 T 29-03-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AM354_RS06545 f6230e157506de95f71001554dd26b51 156 PRINTS PR01693 Cyanase signature 109 125 4.5E-32 T 29-03-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AM354_RS06545 f6230e157506de95f71001554dd26b51 156 PRINTS PR01693 Cyanase signature 22 37 4.5E-32 T 29-03-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AM354_RS06545 f6230e157506de95f71001554dd26b51 156 PRINTS PR01693 Cyanase signature 42 59 4.5E-32 T 29-03-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AM354_RS06545 f6230e157506de95f71001554dd26b51 156 Pfam PF02560 Cyanate lyase C-terminal domain 88 154 8.3E-32 T 29-03-2018 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AM354_RS06545 f6230e157506de95f71001554dd26b51 156 Hamap MF_00535 Cyanate hydratase [cynS]. 1 156 78.14 T 29-03-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AM354_RS06545 f6230e157506de95f71001554dd26b51 156 PIRSF PIRSF001263 3 156 1.4E-61 T 29-03-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AM354_RS06545 f6230e157506de95f71001554dd26b51 156 SMART SM01116 83 156 5.5E-47 T 29-03-2018 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AM354_RS06545 f6230e157506de95f71001554dd26b51 156 TIGRFAM TIGR00673 cynS: cyanase 12 156 1.5E-59 T 29-03-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AM354_RS06545 f6230e157506de95f71001554dd26b51 156 SUPERFAMILY SSF47413 3 85 3.44E-19 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS06545 f6230e157506de95f71001554dd26b51 156 SUPERFAMILY SSF55234 88 155 3.79E-29 T 29-03-2018 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AM354_RS06545 f6230e157506de95f71001554dd26b51 156 Gene3D G3DSA:3.30.1160.10 89 155 4.0E-35 T 29-03-2018 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AM354_RS06545 f6230e157506de95f71001554dd26b51 156 Gene3D G3DSA:1.10.260.40 1 88 4.4E-8 T 29-03-2018 AM354_RS09305 a5bae23228339715c0f6c0cb6d58a813 438 SUPERFAMILY SSF47384 190 268 7.26E-20 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS09305 a5bae23228339715c0f6c0cb6d58a813 438 Pfam PF11808 Domain of unknown function (DUF3329) 6 91 1.8E-29 T 29-03-2018 IPR021766 Protein of unknown function DUF3329 GO:0004673 AM354_RS09305 a5bae23228339715c0f6c0cb6d58a813 438 SUPERFAMILY SSF55785 87 195 1.08E-10 T 29-03-2018 IPR000014 PAS domain AM354_RS09305 a5bae23228339715c0f6c0cb6d58a813 438 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 98 211 2.5E-8 T 29-03-2018 IPR000014 PAS domain AM354_RS09305 a5bae23228339715c0f6c0cb6d58a813 438 SMART SM00091 98 164 6.0E-6 T 29-03-2018 IPR000014 PAS domain AM354_RS09305 a5bae23228339715c0f6c0cb6d58a813 438 SMART SM00387 313 425 1.1E-36 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS09305 a5bae23228339715c0f6c0cb6d58a813 438 Gene3D G3DSA:3.30.565.10 273 426 2.0E-37 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS09305 a5bae23228339715c0f6c0cb6d58a813 438 Pfam PF00512 His Kinase A (phospho-acceptor) domain 203 268 7.9E-19 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS09305 a5bae23228339715c0f6c0cb6d58a813 438 TIGRFAM TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR 96 420 4.5E-136 T 29-03-2018 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR GO:0000155|GO:0000160|GO:0004673|GO:0016021 AM354_RS09305 a5bae23228339715c0f6c0cb6d58a813 438 SMART SM00388 203 269 4.8E-22 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS09305 a5bae23228339715c0f6c0cb6d58a813 438 Gene3D G3DSA:1.10.287.130 209 265 2.7E-18 T 29-03-2018 AM354_RS09305 a5bae23228339715c0f6c0cb6d58a813 438 Pfam PF00989 PAS fold 99 189 1.9E-7 T 29-03-2018 IPR013767 PAS fold GO:0006355 AM354_RS09305 a5bae23228339715c0f6c0cb6d58a813 438 Gene3D G3DSA:3.30.450.20 97 208 9.9E-14 T 29-03-2018 AM354_RS09305 a5bae23228339715c0f6c0cb6d58a813 438 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 313 423 5.8E-25 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS09305 a5bae23228339715c0f6c0cb6d58a813 438 SUPERFAMILY SSF55874 259 423 1.15E-41 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS09305 a5bae23228339715c0f6c0cb6d58a813 438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 403 2.7E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS09305 a5bae23228339715c0f6c0cb6d58a813 438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 350 364 2.7E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS09305 a5bae23228339715c0f6c0cb6d58a813 438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 422 2.7E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS09305 a5bae23228339715c0f6c0cb6d58a813 438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 368 378 2.7E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS04635 ef9acfd5c9d4a109fe3310337e956020 222 SUPERFAMILY SSF53098 1 187 2.39E-31 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS04635 ef9acfd5c9d4a109fe3310337e956020 222 Gene3D G3DSA:3.30.420.10 2 142 1.2E-17 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS04635 ef9acfd5c9d4a109fe3310337e956020 222 SMART SM00479 2 159 2.0E-27 T 29-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AM354_RS04635 ef9acfd5c9d4a109fe3310337e956020 222 Gene3D G3DSA:1.20.5.140 143 158 3.3E-4 T 29-03-2018 AM354_RS04635 ef9acfd5c9d4a109fe3310337e956020 222 Pfam PF00929 Exonuclease 5 150 5.5E-10 T 29-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AM354_RS25625 4c720b187165afcde929f143b42fcb6c 524 Gene3D G3DSA:3.40.190.10 195 290 1.2E-15 T 29-03-2018 AM354_RS25625 4c720b187165afcde929f143b42fcb6c 524 Gene3D G3DSA:3.90.76.10 37 192 3.3E-17 T 29-03-2018 AM354_RS25625 4c720b187165afcde929f143b42fcb6c 524 SUPERFAMILY SSF53850 22 518 1.61E-83 T 29-03-2018 AM354_RS25625 4c720b187165afcde929f143b42fcb6c 524 PIRSF PIRSF002741 8 522 1.2E-44 T 29-03-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AM354_RS25625 4c720b187165afcde929f143b42fcb6c 524 Gene3D G3DSA:3.10.105.10 291 496 4.4E-35 T 29-03-2018 AM354_RS25625 4c720b187165afcde929f143b42fcb6c 524 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 72 438 2.6E-56 T 29-03-2018 IPR000914 Solute-binding protein family 5 domain AM354_RS13280 d2317685c2c2bc58de926503608b27a0 398 Gene3D G3DSA:1.25.40.10 302 346 1.4E-5 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS13280 d2317685c2c2bc58de926503608b27a0 398 Gene3D G3DSA:1.25.40.10 347 393 9.3E-7 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS13280 d2317685c2c2bc58de926503608b27a0 398 Gene3D G3DSA:1.25.40.10 77 241 6.4E-8 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS13280 d2317685c2c2bc58de926503608b27a0 398 TIGRFAM TIGR00540 TPR_hemY_coli: heme biosynthesis-associated TPR protein 3 386 4.0E-126 T 29-03-2018 IPR005254 Heme biosynthesis-associated TPR protein GO:0016020|GO:0042168 AM354_RS13280 d2317685c2c2bc58de926503608b27a0 398 SUPERFAMILY SSF48452 109 226 3.35E-10 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS13280 d2317685c2c2bc58de926503608b27a0 398 SUPERFAMILY SSF48452 269 388 3.35E-10 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS13280 d2317685c2c2bc58de926503608b27a0 398 Pfam PF07219 HemY protein N-terminus 26 132 4.6E-35 T 29-03-2018 IPR010817 HemY, N-terminal AM354_RS21070 16b3b71e82db58e03cf6062081076918 297 Hamap MF_00068 N-acetylmuramic acid 6-phosphate etherase [murQ]. 2 295 43.793 T 29-03-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00030+4.2.1.12|KEGG: 00520+4.2.1.126 AM354_RS21070 16b3b71e82db58e03cf6062081076918 297 Gene3D G3DSA:1.10.8.10 240 268 3.6E-9 T 29-03-2018 AM354_RS21070 16b3b71e82db58e03cf6062081076918 297 Gene3D G3DSA:1.10.8.10 269 297 4.1E-5 T 29-03-2018 AM354_RS21070 16b3b71e82db58e03cf6062081076918 297 ProSitePatterns PS01272 Glucokinase regulatory protein family signature. 185 202 - T 29-03-2018 IPR005486 Glucokinase regulatory protein, conserved site KEGG: 00030+4.2.1.12|KEGG: 00520+4.2.1.126|Reactome: R-HSA-170822|Reactome: R-HSA-5619107 AM354_RS21070 16b3b71e82db58e03cf6062081076918 297 TIGRFAM TIGR00274 TIGR00274: N-acetylmuramic acid 6-phosphate etherase 6 295 7.9E-128 T 29-03-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00030+4.2.1.12|KEGG: 00520+4.2.1.126 AM354_RS21070 16b3b71e82db58e03cf6062081076918 297 Pfam PF13580 SIS domain 39 165 4.1E-9 T 29-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AM354_RS21070 16b3b71e82db58e03cf6062081076918 297 Gene3D G3DSA:3.40.50.10490 11 239 4.8E-56 T 29-03-2018 AM354_RS21070 16b3b71e82db58e03cf6062081076918 297 SUPERFAMILY SSF53697 4 248 1.25E-74 T 29-03-2018 AM354_RS04885 e382e65831e3b12a5c474d36e83b94df 79 SUPERFAMILY SSF54857 1 78 8.63E-28 T 29-03-2018 IPR010391 DNA damage-inducible protein DinI-like AM354_RS04885 e382e65831e3b12a5c474d36e83b94df 79 Pfam PF06183 DinI-like family 14 76 2.3E-29 T 29-03-2018 IPR010391 DNA damage-inducible protein DinI-like AM354_RS04885 e382e65831e3b12a5c474d36e83b94df 79 Gene3D G3DSA:3.30.910.10 1 76 5.3E-32 T 29-03-2018 IPR010391 DNA damage-inducible protein DinI-like AM354_RS16365 3cee73bd788637407686f673f99ed1fa 455 Gene3D G3DSA:3.30.70.260 377 455 7.9E-14 T 29-03-2018 AM354_RS16365 3cee73bd788637407686f673f99ed1fa 455 Pfam PF00696 Amino acid kinase family 10 283 5.3E-47 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase AM354_RS16365 3cee73bd788637407686f673f99ed1fa 455 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 9 455 1.1E-141 T 29-03-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 AM354_RS16365 3cee73bd788637407686f673f99ed1fa 455 PIRSF PIRSF000726 8 455 3.2E-147 T 29-03-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 AM354_RS16365 3cee73bd788637407686f673f99ed1fa 455 ProSitePatterns PS00324 Aspartokinase signature. 12 20 - T 29-03-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 AM354_RS16365 3cee73bd788637407686f673f99ed1fa 455 SUPERFAMILY SSF55021 302 400 5.83E-17 T 29-03-2018 AM354_RS16365 3cee73bd788637407686f673f99ed1fa 455 SUPERFAMILY SSF53633 10 297 3.14E-74 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase AM354_RS16365 3cee73bd788637407686f673f99ed1fa 455 Gene3D G3DSA:3.30.70.260 290 371 4.2E-19 T 29-03-2018 AM354_RS16365 3cee73bd788637407686f673f99ed1fa 455 SUPERFAMILY SSF55021 383 454 5.15E-13 T 29-03-2018 AM354_RS16365 3cee73bd788637407686f673f99ed1fa 455 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 9 455 4.0E-131 T 29-03-2018 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 AM354_RS16365 3cee73bd788637407686f673f99ed1fa 455 Gene3D G3DSA:3.40.1160.10 7 289 1.2E-61 T 29-03-2018 AM354_RS05745 d2c86f96dd5e89cda7ef1e80a8cd505b 164 SUPERFAMILY SSF54909 74 157 4.29E-22 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel AM354_RS05745 d2c86f96dd5e89cda7ef1e80a8cd505b 164 SUPERFAMILY SSF46785 12 70 8.35E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS05745 d2c86f96dd5e89cda7ef1e80a8cd505b 164 Gene3D G3DSA:1.10.10.10 13 64 9.1E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS05745 d2c86f96dd5e89cda7ef1e80a8cd505b 164 SMART SM00344 12 121 3.0E-54 T 29-03-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AM354_RS05745 d2c86f96dd5e89cda7ef1e80a8cd505b 164 Pfam PF13412 Winged helix-turn-helix DNA-binding 12 58 4.7E-21 T 29-03-2018 AM354_RS05745 d2c86f96dd5e89cda7ef1e80a8cd505b 164 ProSitePatterns PS00519 AsnC-type HTH domain signature. 30 56 - T 29-03-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site AM354_RS05745 d2c86f96dd5e89cda7ef1e80a8cd505b 164 Gene3D G3DSA:3.30.70.920 65 158 2.0E-27 T 29-03-2018 AM354_RS05745 d2c86f96dd5e89cda7ef1e80a8cd505b 164 Pfam PF01037 Lrp/AsnC ligand binding domain 78 152 1.2E-24 T 29-03-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AM354_RS05745 d2c86f96dd5e89cda7ef1e80a8cd505b 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 12 28 6.2E-23 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 AM354_RS05745 d2c86f96dd5e89cda7ef1e80a8cd505b 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 39 6.2E-23 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 AM354_RS05745 d2c86f96dd5e89cda7ef1e80a8cd505b 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 39 58 6.2E-23 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 AM354_RS16730 2c1251be4a1329585537a6ff8a824605 481 PIRSF PIRSF004919 14 481 2.6E-146 T 29-03-2018 IPR025502 TldD AM354_RS16730 2c1251be4a1329585537a6ff8a824605 481 SUPERFAMILY SSF111283 19 480 2.09E-131 T 29-03-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 AM354_RS16730 2c1251be4a1329585537a6ff8a824605 481 Gene3D G3DSA:3.30.2290.10 12 240 1.9E-57 T 29-03-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal domain AM354_RS16730 2c1251be4a1329585537a6ff8a824605 481 Pfam PF01523 Putative modulator of DNA gyrase 35 332 2.3E-70 T 29-03-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 AM354_RS10475 ea9001b311fc19c801fee11e0075e4df 296 SUPERFAMILY SSF51690 130 295 1.84E-58 T 29-03-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 AM354_RS10475 ea9001b311fc19c801fee11e0075e4df 296 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 27 295 7.0E-100 T 29-03-2018 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 AM354_RS10475 ea9001b311fc19c801fee11e0075e4df 296 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 130 294 3.4E-61 T 29-03-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 AM354_RS10475 ea9001b311fc19c801fee11e0075e4df 296 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 43 128 5.7E-26 T 29-03-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 AM354_RS10475 ea9001b311fc19c801fee11e0075e4df 296 PIRSF PIRSF006250 17 296 1.7E-106 T 29-03-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 AM354_RS10475 ea9001b311fc19c801fee11e0075e4df 296 Gene3D G3DSA:3.20.20.70 156 285 2.5E-40 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS10475 ea9001b311fc19c801fee11e0075e4df 296 Gene3D G3DSA:3.90.1170.20 8 155 4.3E-46 T 29-03-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 AM354_RS10475 ea9001b311fc19c801fee11e0075e4df 296 SUPERFAMILY SSF54675 14 129 1.31E-32 T 29-03-2018 AM354_RS03860 e596e96b232246d739889c0c0841e97b 77 Pfam PF06004 Bacterial protein of unknown function (DUF903) 26 74 1.0E-18 T 29-03-2018 IPR010305 Protein of unknown function DUF903 AM354_RS03860 e596e96b232246d739889c0c0841e97b 77 SUPERFAMILY SSF50182 23 75 1.2E-14 T 29-03-2018 IPR010920 LSM domain AM354_RS03860 e596e96b232246d739889c0c0841e97b 77 Gene3D G3DSA:2.30.30.100 23 75 5.8E-24 T 29-03-2018 AM354_RS03340 77d204291c9d7cc64e8ae8bacdc897eb 301 Pfam PF01522 Polysaccharide deacetylase 15 170 4.6E-15 T 29-03-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 AM354_RS03340 77d204291c9d7cc64e8ae8bacdc897eb 301 Gene3D G3DSA:3.20.20.370 2 280 2.1E-35 T 29-03-2018 AM354_RS03340 77d204291c9d7cc64e8ae8bacdc897eb 301 Hamap MF_01870 Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD [arnD]. 1 296 64.94 T 29-03-2018 IPR023557 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD, probable GO:0016811 AM354_RS03340 77d204291c9d7cc64e8ae8bacdc897eb 301 SUPERFAMILY SSF88713 85 275 3.34E-33 T 29-03-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AM354_RS03340 77d204291c9d7cc64e8ae8bacdc897eb 301 SUPERFAMILY SSF88713 14 41 3.34E-33 T 29-03-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AM354_RS04935 71f096a1f0f587bcbd71d306a2cb49b8 355 SMART SM00450 136 237 2.9E-26 T 29-03-2018 IPR001763 Rhodanese-like domain AM354_RS04935 71f096a1f0f587bcbd71d306a2cb49b8 355 SUPERFAMILY SSF52821 123 255 5.24E-30 T 29-03-2018 IPR001763 Rhodanese-like domain AM354_RS04935 71f096a1f0f587bcbd71d306a2cb49b8 355 Hamap MF_00469 UPF0176 protein YceA [yceA]. 22 277 39.137 T 29-03-2018 IPR020936 Uncharacterised protein family UPF0176 AM354_RS04935 71f096a1f0f587bcbd71d306a2cb49b8 355 Gene3D G3DSA:3.40.250.10 130 243 2.6E-28 T 29-03-2018 IPR001763 Rhodanese-like domain AM354_RS04935 71f096a1f0f587bcbd71d306a2cb49b8 355 Pfam PF00581 Rhodanese-like domain 138 233 9.3E-15 T 29-03-2018 IPR001763 Rhodanese-like domain AM354_RS04935 71f096a1f0f587bcbd71d306a2cb49b8 355 Pfam PF12368 Rhodanase C-terminal 246 308 2.6E-19 T 29-03-2018 IPR022111 Rhodanase, C-terminal AM354_RS10870 455626bc2b4164fbdf954020693d49f5 299 Gene3D G3DSA:1.10.10.10 1 88 5.4E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS10870 455626bc2b4164fbdf954020693d49f5 299 SUPERFAMILY SSF46785 3 87 5.44E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS10870 455626bc2b4164fbdf954020693d49f5 299 Pfam PF03466 LysR substrate binding domain 121 288 6.5E-10 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS10870 455626bc2b4164fbdf954020693d49f5 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 1.1E-15 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS10870 455626bc2b4164fbdf954020693d49f5 299 Gene3D G3DSA:3.40.190.10 96 226 2.6E-4 T 29-03-2018 AM354_RS10870 455626bc2b4164fbdf954020693d49f5 299 SUPERFAMILY SSF53850 92 290 5.12E-25 T 29-03-2018 AM354_RS10990 69227ecfd299d97ff73e02760eb5a54b 165 PRINTS PR01021 OMPA domain signature 63 85 4.2E-10 T 29-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AM354_RS10990 69227ecfd299d97ff73e02760eb5a54b 165 PRINTS PR01021 OMPA domain signature 108 124 4.2E-10 T 29-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AM354_RS10990 69227ecfd299d97ff73e02760eb5a54b 165 PRINTS PR01021 OMPA domain signature 93 108 4.2E-10 T 29-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AM354_RS10990 69227ecfd299d97ff73e02760eb5a54b 165 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 126 145 9.2E-9 T 29-03-2018 AM354_RS10990 69227ecfd299d97ff73e02760eb5a54b 165 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 108 125 9.2E-9 T 29-03-2018 AM354_RS10990 69227ecfd299d97ff73e02760eb5a54b 165 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 146 165 9.2E-9 T 29-03-2018 AM354_RS10990 69227ecfd299d97ff73e02760eb5a54b 165 Gene3D G3DSA:3.30.1330.60 29 165 4.3E-32 T 29-03-2018 IPR006665 OmpA-like domain AM354_RS10990 69227ecfd299d97ff73e02760eb5a54b 165 Pfam PF00691 OmpA family 63 157 3.4E-18 T 29-03-2018 IPR006665 OmpA-like domain AM354_RS10990 69227ecfd299d97ff73e02760eb5a54b 165 SUPERFAMILY SSF103088 49 164 2.22E-32 T 29-03-2018 IPR006665 OmpA-like domain AM354_RS06615 ecf1bcac0ccd7b53bc6a7259485991c3 180 Pfam PF00419 Fimbrial protein 28 180 6.8E-20 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS06615 ecf1bcac0ccd7b53bc6a7259485991c3 180 Gene3D G3DSA:2.60.40.1090 25 180 5.2E-36 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS06615 ecf1bcac0ccd7b53bc6a7259485991c3 180 SUPERFAMILY SSF49401 33 180 2.63E-32 T 29-03-2018 IPR008966 Adhesion domain AM354_RS07060 00c200dbf08ab6553ad43a5aef1e155a 623 Gene3D G3DSA:3.20.20.140 74 474 1.4E-35 T 29-03-2018 AM354_RS07060 00c200dbf08ab6553ad43a5aef1e155a 623 Pfam PF07969 Amidohydrolase family 52 536 1.2E-122 T 29-03-2018 IPR013108 Amidohydrolase 3 AM354_RS07060 00c200dbf08ab6553ad43a5aef1e155a 623 Gene3D G3DSA:2.30.40.10 4 73 2.7E-19 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM354_RS07060 00c200dbf08ab6553ad43a5aef1e155a 623 SUPERFAMILY SSF51338 3 64 7.78E-23 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM354_RS07060 00c200dbf08ab6553ad43a5aef1e155a 623 SUPERFAMILY SSF51338 495 544 7.78E-23 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM354_RS07060 00c200dbf08ab6553ad43a5aef1e155a 623 Gene3D G3DSA:2.30.40.10 475 541 5.9E-5 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM354_RS07060 00c200dbf08ab6553ad43a5aef1e155a 623 SUPERFAMILY SSF51556 63 125 6.53E-45 T 29-03-2018 IPR032466 Metal-dependent hydrolase AM354_RS07060 00c200dbf08ab6553ad43a5aef1e155a 623 SUPERFAMILY SSF51556 205 495 6.53E-45 T 29-03-2018 IPR032466 Metal-dependent hydrolase AM354_RS08095 15791366e724c7ec4f149cc24e247bf6 476 ProSitePatterns PS00394 DNA photolyases class 1 signature 1. 325 337 - T 29-03-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal AM354_RS08095 15791366e724c7ec4f149cc24e247bf6 476 Gene3D G3DSA:3.40.50.620 1 157 8.4E-40 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS08095 15791366e724c7ec4f149cc24e247bf6 476 Gene3D G3DSA:1.10.579.10 293 473 2.1E-72 T 29-03-2018 AM354_RS08095 15791366e724c7ec4f149cc24e247bf6 476 SUPERFAMILY SSF52425 3 178 1.31E-50 T 29-03-2018 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-1368108|Reactome: R-HSA-400253 AM354_RS08095 15791366e724c7ec4f149cc24e247bf6 476 Pfam PF03441 FAD binding domain of DNA photolyase 275 469 1.9E-82 T 29-03-2018 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-1368108|Reactome: R-HSA-400253 AM354_RS08095 15791366e724c7ec4f149cc24e247bf6 476 Gene3D G3DSA:1.25.40.80 158 291 1.6E-27 T 29-03-2018 AM354_RS08095 15791366e724c7ec4f149cc24e247bf6 476 Pfam PF00875 DNA photolyase 5 174 1.8E-41 T 29-03-2018 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-1368108|Reactome: R-HSA-400253 AM354_RS08095 15791366e724c7ec4f149cc24e247bf6 476 SUPERFAMILY SSF48173 201 472 4.97E-108 T 29-03-2018 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-1368108|Reactome: R-HSA-400253 AM354_RS08095 15791366e724c7ec4f149cc24e247bf6 476 ProSitePatterns PS00691 DNA photolyases class 1 signature 2. 345 364 - T 29-03-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal AM354_RS08095 15791366e724c7ec4f149cc24e247bf6 476 PRINTS PR00147 DNA photolyase signature 384 398 1.2E-30 T 29-03-2018 IPR002081 Cryptochrome/DNA photolyase class 1 AM354_RS08095 15791366e724c7ec4f149cc24e247bf6 476 PRINTS PR00147 DNA photolyase signature 325 341 1.2E-30 T 29-03-2018 IPR002081 Cryptochrome/DNA photolyase class 1 AM354_RS08095 15791366e724c7ec4f149cc24e247bf6 476 PRINTS PR00147 DNA photolyase signature 144 160 1.2E-30 T 29-03-2018 IPR002081 Cryptochrome/DNA photolyase class 1 AM354_RS08095 15791366e724c7ec4f149cc24e247bf6 476 PRINTS PR00147 DNA photolyase signature 345 363 1.2E-30 T 29-03-2018 IPR002081 Cryptochrome/DNA photolyase class 1 AM354_RS02025 f4f81353d7231039d3b445b3b1415eb5 690 TIGRFAM TIGR01778 TonB-copper: TonB-dependent copper receptor 58 690 4.0E-249 T 29-03-2018 IPR010100 TonB-dependent copper receptor AM354_RS02025 f4f81353d7231039d3b445b3b1415eb5 690 SUPERFAMILY SSF56935 329 690 4.88E-91 T 29-03-2018 AM354_RS02025 f4f81353d7231039d3b445b3b1415eb5 690 SUPERFAMILY SSF56935 44 301 4.88E-91 T 29-03-2018 AM354_RS02025 f4f81353d7231039d3b445b3b1415eb5 690 Pfam PF07715 TonB-dependent Receptor Plug Domain 59 157 3.9E-11 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS02025 f4f81353d7231039d3b445b3b1415eb5 690 Gene3D G3DSA:2.40.170.20 169 690 2.3E-61 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS02025 f4f81353d7231039d3b445b3b1415eb5 690 Pfam PF00593 TonB dependent receptor 211 689 5.4E-44 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS02025 f4f81353d7231039d3b445b3b1415eb5 690 Gene3D G3DSA:2.170.130.10 52 168 8.7E-10 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS11580 9b2a5787f53044f8c32862cf5b64b3a6 476 Gene3D G3DSA:3.20.20.80 3 475 7.3E-154 T 29-03-2018 AM354_RS11580 9b2a5787f53044f8c32862cf5b64b3a6 476 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 370 378 - T 29-03-2018 IPR018120 Glycoside hydrolase family 1, active site AM354_RS11580 9b2a5787f53044f8c32862cf5b64b3a6 476 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 10 24 - T 29-03-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site AM354_RS11580 9b2a5787f53044f8c32862cf5b64b3a6 476 SUPERFAMILY SSF51445 5 472 1.57E-158 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily AM354_RS11580 9b2a5787f53044f8c32862cf5b64b3a6 476 Pfam PF00232 Glycosyl hydrolase family 1 4 472 2.3E-134 T 29-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM354_RS11580 9b2a5787f53044f8c32862cf5b64b3a6 476 PRINTS PR00131 Glycosyl hydrolase family 1 signature 304 318 6.3E-16 T 29-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM354_RS11580 9b2a5787f53044f8c32862cf5b64b3a6 476 PRINTS PR00131 Glycosyl hydrolase family 1 signature 391 402 6.3E-16 T 29-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM354_RS11580 9b2a5787f53044f8c32862cf5b64b3a6 476 PRINTS PR00131 Glycosyl hydrolase family 1 signature 370 378 6.3E-16 T 29-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM354_RS11580 9b2a5787f53044f8c32862cf5b64b3a6 476 PRINTS PR00131 Glycosyl hydrolase family 1 signature 412 429 6.3E-16 T 29-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM354_RS11580 9b2a5787f53044f8c32862cf5b64b3a6 476 PRINTS PR00131 Glycosyl hydrolase family 1 signature 437 449 6.3E-16 T 29-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM354_RS00835 9cc60c411c2fe26f0913a13b2c80389b 332 SUPERFAMILY SSF52418 70 327 3.4E-94 T 29-03-2018 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM354_RS00835 9cc60c411c2fe26f0913a13b2c80389b 332 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 5 328 5.8E-127 T 29-03-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 AM354_RS00835 9cc60c411c2fe26f0913a13b2c80389b 332 SUPERFAMILY SSF47648 1 67 1.57E-16 T 29-03-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM354_RS00835 9cc60c411c2fe26f0913a13b2c80389b 332 Gene3D G3DSA:1.20.970.10 1 75 3.7E-17 T 29-03-2018 AM354_RS00835 9cc60c411c2fe26f0913a13b2c80389b 332 Gene3D G3DSA:3.40.1030.10 76 331 1.9E-93 T 29-03-2018 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM354_RS00835 9cc60c411c2fe26f0913a13b2c80389b 332 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 3 331 39.395 T 29-03-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 AM354_RS00835 9cc60c411c2fe26f0913a13b2c80389b 332 Pfam PF00591 Glycosyl transferase family, a/b domain 73 322 4.3E-100 T 29-03-2018 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM354_RS00835 9cc60c411c2fe26f0913a13b2c80389b 332 Pfam PF02885 Glycosyl transferase family, helical bundle domain 3 62 1.0E-14 T 29-03-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM354_RS21985 f2eee04808de5473aea8f85f5f5ba163 233 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 43 63 1.7E-6 T 29-03-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AM354_RS21985 f2eee04808de5473aea8f85f5f5ba163 233 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 131 158 1.7E-6 T 29-03-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AM354_RS21985 f2eee04808de5473aea8f85f5f5ba163 233 Gene3D G3DSA:1.10.8.60 167 233 8.8E-12 T 29-03-2018 AM354_RS21985 f2eee04808de5473aea8f85f5f5ba163 233 SUPERFAMILY SSF52540 17 211 3.43E-21 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS21985 f2eee04808de5473aea8f85f5f5ba163 233 Gene3D G3DSA:3.40.50.300 13 164 4.8E-10 T 29-03-2018 AM354_RS21985 f2eee04808de5473aea8f85f5f5ba163 233 TIGRFAM TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda 6 231 2.0E-83 T 29-03-2018 IPR017788 DnaA regulatory inactivator Hda GO:0032297 AM354_RS21985 f2eee04808de5473aea8f85f5f5ba163 233 Hamap MF_01158 DnaA regulatory inactivator Hda [hda]. 5 233 58.927 T 29-03-2018 IPR022864 DnaA regulatory inactivator Hda, Enterobacteriaceae AM354_RS21985 f2eee04808de5473aea8f85f5f5ba163 233 Pfam PF00308 Bacterial dnaA protein 16 212 2.4E-16 T 29-03-2018 IPR013317 Chromosomal replication initiator protein DnaA AM354_RS06710 81ebc338276bc5b306f4b607ed6028c2 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 177 189 6.0E-6 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS06710 81ebc338276bc5b306f4b607ed6028c2 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 147 161 6.0E-6 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS06710 81ebc338276bc5b306f4b607ed6028c2 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 161 177 6.0E-6 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS06710 81ebc338276bc5b306f4b607ed6028c2 209 SUPERFAMILY SSF46894 135 192 2.79E-12 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS06710 81ebc338276bc5b306f4b607ed6028c2 209 Gene3D G3DSA:1.10.10.10 96 204 8.8E-9 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS06710 81ebc338276bc5b306f4b607ed6028c2 209 SMART SM00421 144 201 2.5E-6 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS06710 81ebc338276bc5b306f4b607ed6028c2 209 Pfam PF00196 Bacterial regulatory proteins, luxR family 146 192 1.1E-10 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS04465 51333cc9d9ea9ff821cb6caa796d3c1f 150 Pfam PF04074 Domain of unknown function (DUF386) 3 140 2.1E-23 T 29-03-2018 IPR004375 YhcH/YjgK/YiaL family AM354_RS04465 51333cc9d9ea9ff821cb6caa796d3c1f 150 Gene3D G3DSA:2.60.120.370 1 143 2.2E-19 T 29-03-2018 IPR004375 YhcH/YjgK/YiaL family AM354_RS04465 51333cc9d9ea9ff821cb6caa796d3c1f 150 SUPERFAMILY SSF51197 3 143 1.29E-20 T 29-03-2018 AM354_RS00355 97a866ed1b99c72fd58e897e93d3d2ed 98 Pfam PF07383 Protein of unknown function (DUF1496) 49 97 9.2E-25 T 29-03-2018 IPR009971 Protein of unknown function DUF1496 AM354_RS04335 99a6067e4594f804fed734f4bdabbd05 277 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 4 275 45.988 T 29-03-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 AM354_RS04335 99a6067e4594f804fed734f4bdabbd05 277 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 23 271 1.5E-90 T 29-03-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 AM354_RS04335 99a6067e4594f804fed734f4bdabbd05 277 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 180 186 - T 29-03-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AM354_RS04335 99a6067e4594f804fed734f4bdabbd05 277 Gene3D G3DSA:3.40.50.150 85 276 5.7E-49 T 29-03-2018 AM354_RS04335 99a6067e4594f804fed734f4bdabbd05 277 Pfam PF13847 Methyltransferase domain 111 246 3.6E-22 T 29-03-2018 IPR025714 Methyltransferase domain AM354_RS04335 99a6067e4594f804fed734f4bdabbd05 277 Gene3D G3DSA:1.10.8.10 1 84 2.1E-21 T 29-03-2018 AM354_RS04335 99a6067e4594f804fed734f4bdabbd05 277 SUPERFAMILY SSF53335 3 273 1.39E-62 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS04335 99a6067e4594f804fed734f4bdabbd05 277 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 1 275 1.6E-88 T 29-03-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 AM354_RS12915 a3853ab1df1d52df327204315b45343e 87 Pfam PF02416 mttA/Hcf106 family 4 50 2.2E-13 T 29-03-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 AM354_RS12915 a3853ab1df1d52df327204315b45343e 87 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 46 2.9E-20 T 29-03-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 AM354_RS12915 a3853ab1df1d52df327204315b45343e 87 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 84 23.514 T 29-03-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 AM354_RS03885 46b7ada8d6ecd054e7f656659f7ffabc 375 Gene3D G3DSA:3.55.50.10 114 193 1.8E-4 T 29-03-2018 AM354_RS03885 46b7ada8d6ecd054e7f656659f7ffabc 375 Pfam PF05954 Phage late control gene D protein (GPD) 115 338 5.9E-14 T 29-03-2018 AM354_RS03885 46b7ada8d6ecd054e7f656659f7ffabc 375 SUPERFAMILY SSF69279 11 185 1.93E-13 T 29-03-2018 AM354_RS18065 9f505be1f9cf60d2bf304dc8fd497adb 483 SUPERFAMILY SSF53187 302 331 1.26E-60 T 29-03-2018 AM354_RS18065 9f505be1f9cf60d2bf304dc8fd497adb 483 SUPERFAMILY SSF53187 386 450 1.26E-60 T 29-03-2018 AM354_RS18065 9f505be1f9cf60d2bf304dc8fd497adb 483 SUPERFAMILY SSF53187 9 202 1.26E-60 T 29-03-2018 AM354_RS18065 9f505be1f9cf60d2bf304dc8fd497adb 483 SUPERFAMILY SSF55031 192 295 6.45E-18 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain AM354_RS18065 9f505be1f9cf60d2bf304dc8fd497adb 483 Pfam PF01546 Peptidase family M20/M25/M40 100 256 1.4E-7 T 29-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AM354_RS18065 9f505be1f9cf60d2bf304dc8fd497adb 483 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 25 435 1.6E-102 T 29-03-2018 IPR017439 Amidohydrolase GO:0016787 AM354_RS18065 9f505be1f9cf60d2bf304dc8fd497adb 483 Gene3D G3DSA:3.40.630.10 381 468 5.4E-12 T 29-03-2018 AM354_RS18065 9f505be1f9cf60d2bf304dc8fd497adb 483 Gene3D G3DSA:3.40.630.10 4 301 1.3E-49 T 29-03-2018 AM354_RS18065 9f505be1f9cf60d2bf304dc8fd497adb 483 PIRSF PIRSF037227 3 483 3.1E-234 T 29-03-2018 IPR017145 Aminobenzoyl-glutamate utilization protein B AM354_RS18065 9f505be1f9cf60d2bf304dc8fd497adb 483 Pfam PF07687 Peptidase dimerisation domain 190 281 1.7E-4 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain AM354_RS08710 62169956c33d3a4ad14546a2215eaccf 488 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 30 479 6.5E-118 T 29-03-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM354_RS08710 62169956c33d3a4ad14546a2215eaccf 488 Gene3D G3DSA:3.40.710.10 172 487 1.6E-27 T 29-03-2018 AM354_RS08710 62169956c33d3a4ad14546a2215eaccf 488 TIGRFAM TIGR00666 PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 57 459 2.3E-101 T 29-03-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM354_RS08710 62169956c33d3a4ad14546a2215eaccf 488 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 297 319 4.2E-27 T 29-03-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM354_RS08710 62169956c33d3a4ad14546a2215eaccf 488 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 369 383 4.2E-27 T 29-03-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM354_RS08710 62169956c33d3a4ad14546a2215eaccf 488 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 436 449 4.2E-27 T 29-03-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM354_RS08710 62169956c33d3a4ad14546a2215eaccf 488 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 354 368 4.2E-27 T 29-03-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM354_RS08710 62169956c33d3a4ad14546a2215eaccf 488 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 69 88 4.2E-27 T 29-03-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM354_RS08710 62169956c33d3a4ad14546a2215eaccf 488 SUPERFAMILY SSF56601 28 480 1.49E-92 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM354_RS08710 62169956c33d3a4ad14546a2215eaccf 488 Gene3D G3DSA:3.40.710.10 25 168 1.1E-10 T 29-03-2018 AM354_RS16825 4359c4ae5b6ce5de2a84d1fa20c8e4cf 136 PIRSF PIRSF006092 6 128 3.9E-25 T 29-03-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 AM354_RS16825 4359c4ae5b6ce5de2a84d1fa20c8e4cf 136 Pfam PF14760 Rnk N-terminus 4 43 9.8E-13 T 29-03-2018 IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain AM354_RS16825 4359c4ae5b6ce5de2a84d1fa20c8e4cf 136 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 50 124 8.1E-18 T 29-03-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 AM354_RS16825 4359c4ae5b6ce5de2a84d1fa20c8e4cf 136 Gene3D G3DSA:1.10.286.20 3 43 1.1E-13 T 29-03-2018 AM354_RS16825 4359c4ae5b6ce5de2a84d1fa20c8e4cf 136 SUPERFAMILY SSF54534 49 126 3.53E-18 T 29-03-2018 AM354_RS16825 4359c4ae5b6ce5de2a84d1fa20c8e4cf 136 Gene3D G3DSA:3.10.50.30 45 136 1.0E-22 T 29-03-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 AM354_RS16825 4359c4ae5b6ce5de2a84d1fa20c8e4cf 136 Hamap MF_00954 Regulator of nucleoside diphosphate kinase [rnk]. 1 136 43.418 T 29-03-2018 IPR028625 Regulator of nucleoside diphosphate kinase GO:0065007|GO:0070063 AM354_RS06355 de275ea36e81df58e4c9f4133b6a03a6 298 Pfam PF00483 Nucleotidyl transferase 6 274 1.0E-25 T 29-03-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AM354_RS06355 de275ea36e81df58e4c9f4133b6a03a6 298 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 6 273 9.7E-114 T 29-03-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 AM354_RS06355 de275ea36e81df58e4c9f4133b6a03a6 298 Gene3D G3DSA:3.90.550.10 1 298 3.4E-56 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS06355 de275ea36e81df58e4c9f4133b6a03a6 298 SUPERFAMILY SSF53448 2 277 1.04E-60 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS05345 44506ea844f69bb7a911afde6346da68 231 Gene3D G3DSA:2.60.40.10 20 143 8.3E-37 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS05345 44506ea844f69bb7a911afde6346da68 231 PRINTS PR00969 Pili chaperone signature 124 139 6.6E-31 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS05345 44506ea844f69bb7a911afde6346da68 231 PRINTS PR00969 Pili chaperone signature 159 174 6.6E-31 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS05345 44506ea844f69bb7a911afde6346da68 231 PRINTS PR00969 Pili chaperone signature 98 115 6.6E-31 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS05345 44506ea844f69bb7a911afde6346da68 231 PRINTS PR00969 Pili chaperone signature 70 91 6.6E-31 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS05345 44506ea844f69bb7a911afde6346da68 231 PRINTS PR00969 Pili chaperone signature 21 30 6.6E-31 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS05345 44506ea844f69bb7a911afde6346da68 231 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 21 142 5.5E-43 T 29-03-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 AM354_RS05345 44506ea844f69bb7a911afde6346da68 231 SUPERFAMILY SSF49354 17 142 1.02E-41 T 29-03-2018 IPR008962 PapD-like AM354_RS05345 44506ea844f69bb7a911afde6346da68 231 SUPERFAMILY SSF49584 136 224 1.14E-15 T 29-03-2018 IPR016148 Pili assembly chaperone, C-terminal AM354_RS05345 44506ea844f69bb7a911afde6346da68 231 Gene3D G3DSA:2.60.40.10 145 230 3.1E-15 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS05345 44506ea844f69bb7a911afde6346da68 231 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 164 223 5.8E-11 T 29-03-2018 IPR016148 Pili assembly chaperone, C-terminal AM354_RS05345 44506ea844f69bb7a911afde6346da68 231 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 97 114 - T 29-03-2018 IPR018046 Pili assembly chaperone, conserved site AM354_RS08805 0675aa3f16d9d44a04b6eb7bfc4d9266 201 SUPERFAMILY SSF111304 2 199 4.32E-71 T 29-03-2018 IPR023627 Recombination protein RecR AM354_RS08805 0675aa3f16d9d44a04b6eb7bfc4d9266 201 TIGRFAM TIGR00615 recR: recombination protein RecR 2 197 9.7E-82 T 29-03-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 AM354_RS08805 0675aa3f16d9d44a04b6eb7bfc4d9266 201 ProSitePatterns PS01300 RecR protein signature. 57 78 - T 29-03-2018 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 AM354_RS08805 0675aa3f16d9d44a04b6eb7bfc4d9266 201 SMART SM00493 81 166 1.5E-19 T 29-03-2018 IPR006171 TOPRIM domain AM354_RS08805 0675aa3f16d9d44a04b6eb7bfc4d9266 201 Pfam PF02132 RecR protein 41 77 2.3E-15 T 29-03-2018 IPR023628 Recombination protein RecR, C4-type zinc finger AM354_RS08805 0675aa3f16d9d44a04b6eb7bfc4d9266 201 Gene3D G3DSA:3.40.1360.10 77 171 1.2E-34 T 29-03-2018 AM354_RS08805 0675aa3f16d9d44a04b6eb7bfc4d9266 201 Pfam PF13662 Toprim domain 82 172 1.5E-22 T 29-03-2018 IPR006171 TOPRIM domain AM354_RS08805 0675aa3f16d9d44a04b6eb7bfc4d9266 201 Hamap MF_00017 Recombination protein RecR [recR]. 1 199 103.425 T 29-03-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 AM354_RS14840 2bf72a6de16ecdc61afadc8d904f0e99 288 SUPERFAMILY SSF52096 25 266 6.43E-33 T 29-03-2018 IPR029045 ClpP/crotonase-like domain AM354_RS14840 2bf72a6de16ecdc61afadc8d904f0e99 288 Gene3D G3DSA:3.90.226.10 11 266 5.4E-36 T 29-03-2018 AM354_RS14840 2bf72a6de16ecdc61afadc8d904f0e99 288 Pfam PF00378 Enoyl-CoA hydratase/isomerase 43 212 3.4E-17 T 29-03-2018 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AM354_RS13340 030ea90f2de97f4bafedc03b9747ba5e 293 SUPERFAMILY SSF53448 1 286 5.63E-90 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS13340 030ea90f2de97f4bafedc03b9747ba5e 293 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 2 286 2.8E-157 T 29-03-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 AM354_RS13340 030ea90f2de97f4bafedc03b9747ba5e 293 Pfam PF00483 Nucleotidyl transferase 2 238 5.6E-70 T 29-03-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AM354_RS13340 030ea90f2de97f4bafedc03b9747ba5e 293 Gene3D G3DSA:3.90.550.10 1 292 1.9E-66 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS24400 d26eb90cd545d8553fab26683cdfa5a0 266 SUPERFAMILY SSF55486 36 248 9.52E-41 T 29-03-2018 AM354_RS24400 d26eb90cd545d8553fab26683cdfa5a0 266 Pfam PF06167 Glucose-regulated metallo-peptidase M90 12 246 2.0E-65 T 29-03-2018 IPR010384 MtfA family AM354_RS24400 d26eb90cd545d8553fab26683cdfa5a0 266 Gene3D G3DSA:3.40.390.10 84 248 4.0E-23 T 29-03-2018 IPR024079 Metallopeptidase, catalytic domain GO:0008237 AM354_RS24400 d26eb90cd545d8553fab26683cdfa5a0 266 Hamap MF_01593 Protein MtfA [mtfA]. 1 266 59.776 T 29-03-2018 IPR010384 MtfA family AM354_RS11300 e01659cd883487088f438a496d4b9b9d 497 Pfam PF13520 Amino acid permease 17 437 2.6E-36 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM354_RS11300 e01659cd883487088f438a496d4b9b9d 497 PIRSF PIRSF006060 2 489 4.6E-66 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM354_RS09575 c9fc86f1434dc0fc72bf7f25f5bd3425 351 SUPERFAMILY SSF53155 187 267 3.53E-19 T 29-03-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 AM354_RS09575 c9fc86f1434dc0fc72bf7f25f5bd3425 351 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 319 325 - T 29-03-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 AM354_RS09575 c9fc86f1434dc0fc72bf7f25f5bd3425 351 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 270 349 6.9E-32 T 29-03-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 AM354_RS09575 c9fc86f1434dc0fc72bf7f25f5bd3425 351 Pfam PF02805 Metal binding domain of Ada 11 72 4.3E-32 T 29-03-2018 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 AM354_RS09575 c9fc86f1434dc0fc72bf7f25f5bd3425 351 Gene3D G3DSA:1.10.10.60 79 138 1.8E-16 T 29-03-2018 AM354_RS09575 c9fc86f1434dc0fc72bf7f25f5bd3425 351 Gene3D G3DSA:3.40.10.10 1 75 3.4E-27 T 29-03-2018 IPR035451 Ada-like domain AM354_RS09575 c9fc86f1434dc0fc72bf7f25f5bd3425 351 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 269 348 1.1E-35 T 29-03-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 AM354_RS09575 c9fc86f1434dc0fc72bf7f25f5bd3425 351 Pfam PF12833 Helix-turn-helix domain 105 182 6.2E-17 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS09575 c9fc86f1434dc0fc72bf7f25f5bd3425 351 SUPERFAMILY SSF46689 84 131 3.94E-9 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS09575 c9fc86f1434dc0fc72bf7f25f5bd3425 351 Gene3D G3DSA:1.10.10.60 139 183 8.3E-4 T 29-03-2018 AM354_RS09575 c9fc86f1434dc0fc72bf7f25f5bd3425 351 SUPERFAMILY SSF57884 5 91 7.72E-32 T 29-03-2018 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 AM354_RS09575 c9fc86f1434dc0fc72bf7f25f5bd3425 351 SMART SM00342 99 181 1.7E-14 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS09575 c9fc86f1434dc0fc72bf7f25f5bd3425 351 Gene3D G3DSA:1.10.10.10 265 351 4.2E-34 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS09575 c9fc86f1434dc0fc72bf7f25f5bd3425 351 Gene3D G3DSA:3.30.160.70 184 264 5.5E-20 T 29-03-2018 AM354_RS09575 c9fc86f1434dc0fc72bf7f25f5bd3425 351 PIRSF PIRSF000409 1 351 2.1E-140 T 29-03-2018 IPR016221 Bifunctional regulatory protein Ada AM354_RS09575 c9fc86f1434dc0fc72bf7f25f5bd3425 351 SUPERFAMILY SSF46767 268 348 4.19E-30 T 29-03-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 AM354_RS02750 f5cab32d202f66b3a60cec3ef9ade676 221 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 6 172 6.0E-39 T 29-03-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 AM354_RS02750 f5cab32d202f66b3a60cec3ef9ade676 221 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 2 214 23.906 T 29-03-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 AM354_RS02750 f5cab32d202f66b3a60cec3ef9ade676 221 Pfam PF13500 AAA domain 4 207 1.3E-31 T 29-03-2018 AM354_RS02750 f5cab32d202f66b3a60cec3ef9ade676 221 Gene3D G3DSA:3.40.50.300 2 215 3.8E-50 T 29-03-2018 AM354_RS02750 f5cab32d202f66b3a60cec3ef9ade676 221 PIRSF PIRSF006755 1 221 2.5E-65 T 29-03-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 AM354_RS02750 f5cab32d202f66b3a60cec3ef9ade676 221 SUPERFAMILY SSF52540 1 214 4.61E-57 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS12090 33b9cf771cf20a5773846b3415cebdec 390 Gene3D G3DSA:3.40.50.300 159 343 2.2E-30 T 29-03-2018 AM354_RS12090 33b9cf771cf20a5773846b3415cebdec 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 228 246 1.2E-34 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 AM354_RS12090 33b9cf771cf20a5773846b3415cebdec 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 1.2E-34 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 AM354_RS12090 33b9cf771cf20a5773846b3415cebdec 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 1.2E-34 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 AM354_RS12090 33b9cf771cf20a5773846b3415cebdec 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 211 226 1.2E-34 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 AM354_RS12090 33b9cf771cf20a5773846b3415cebdec 390 PIRSF PIRSF002401 1 375 9.4E-142 T 29-03-2018 IPR035101 GTP-binding protein, Obg-type AM354_RS12090 33b9cf771cf20a5773846b3415cebdec 390 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 332 1.3E-148 T 29-03-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 AM354_RS12090 33b9cf771cf20a5773846b3415cebdec 390 SUPERFAMILY SSF82051 2 157 3.92E-57 T 29-03-2018 IPR006169 GTP1/OBG domain AM354_RS12090 33b9cf771cf20a5773846b3415cebdec 390 Gene3D G3DSA:2.70.210.12 2 156 2.2E-58 T 29-03-2018 IPR006169 GTP1/OBG domain AM354_RS12090 33b9cf771cf20a5773846b3415cebdec 390 Pfam PF01926 50S ribosome-binding GTPase 161 284 1.7E-24 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 AM354_RS12090 33b9cf771cf20a5773846b3415cebdec 390 ProSitePatterns PS00905 GTP1/OBG family signature. 213 226 - T 29-03-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 AM354_RS12090 33b9cf771cf20a5773846b3415cebdec 390 Hamap MF_01454 GTPase Obg [obg]. 2 333 48.279 T 29-03-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 AM354_RS12090 33b9cf771cf20a5773846b3415cebdec 390 SUPERFAMILY SSF52540 152 336 4.2E-47 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS12090 33b9cf771cf20a5773846b3415cebdec 390 Pfam PF01018 GTP1/OBG 4 156 2.4E-59 T 29-03-2018 IPR006169 GTP1/OBG domain AM354_RS23170 c64cb60264a021b81533293b177f2d5f 100 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 2 100 19.962 T 29-03-2018 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 AM354_RS23170 c64cb60264a021b81533293b177f2d5f 100 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 8 95 2.6E-21 T 29-03-2018 AM354_RS10450 06cd758102ac6f62206dbf9a2485468e 114 Gene3D G3DSA:2.60.300.12 8 114 2.3E-38 T 29-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AM354_RS10450 06cd758102ac6f62206dbf9a2485468e 114 Pfam PF01521 Iron-sulphur cluster biosynthesis 9 109 5.0E-20 T 29-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AM354_RS10450 06cd758102ac6f62206dbf9a2485468e 114 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 9 113 1.4E-38 T 29-03-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 AM354_RS10450 06cd758102ac6f62206dbf9a2485468e 114 Hamap MF_01380 Iron-sulfur cluster insertion protein ErpA [erpA]. 1 114 36.686 T 29-03-2018 IPR023063 FeS cluster insertion protein ErpA GO:0097428 AM354_RS10450 06cd758102ac6f62206dbf9a2485468e 114 SUPERFAMILY SSF89360 8 103 1.49E-30 T 29-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AM354_RS10450 06cd758102ac6f62206dbf9a2485468e 114 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 95 112 - T 29-03-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 AM354_RS25450 e278df653d54d738825eaa80d4012c07 104 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 4 104 17.929 T 29-03-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 AM354_RS25450 e278df653d54d738825eaa80d4012c07 104 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 68 84 1.8E-18 T 29-03-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 AM354_RS25450 e278df653d54d738825eaa80d4012c07 104 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 33 49 1.8E-18 T 29-03-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 AM354_RS25450 e278df653d54d738825eaa80d4012c07 104 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 89 102 1.8E-18 T 29-03-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 AM354_RS25450 e278df653d54d738825eaa80d4012c07 104 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 2 103 4.3E-28 T 29-03-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 AM354_RS25450 e278df653d54d738825eaa80d4012c07 104 Pfam PF02049 Flagellar hook-basal body complex protein FliE 20 104 5.1E-29 T 29-03-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 AM354_RS09975 990ca7a97519e2509c8b201e9a4f93b5 267 Pfam PF00248 Aldo/keto reductase family 9 250 9.0E-51 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS09975 990ca7a97519e2509c8b201e9a4f93b5 267 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 114 131 - T 29-03-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AM354_RS09975 990ca7a97519e2509c8b201e9a4f93b5 267 Gene3D G3DSA:3.20.20.100 1 263 1.4E-82 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS09975 990ca7a97519e2509c8b201e9a4f93b5 267 PIRSF PIRSF000097 1 113 1.1E-32 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM354_RS09975 990ca7a97519e2509c8b201e9a4f93b5 267 PIRSF PIRSF000097 102 265 7.4E-33 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM354_RS09975 990ca7a97519e2509c8b201e9a4f93b5 267 SUPERFAMILY SSF51430 2 257 1.11E-80 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS09975 990ca7a97519e2509c8b201e9a4f93b5 267 PRINTS PR00069 Aldo-keto reductase signature 81 99 3.2E-44 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM354_RS09975 990ca7a97519e2509c8b201e9a4f93b5 267 PRINTS PR00069 Aldo-keto reductase signature 25 49 3.2E-44 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM354_RS09975 990ca7a97519e2509c8b201e9a4f93b5 267 PRINTS PR00069 Aldo-keto reductase signature 149 178 3.2E-44 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM354_RS09975 990ca7a97519e2509c8b201e9a4f93b5 267 PRINTS PR00069 Aldo-keto reductase signature 114 131 3.2E-44 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM354_RS09975 990ca7a97519e2509c8b201e9a4f93b5 267 PRINTS PR00069 Aldo-keto reductase signature 186 210 3.2E-44 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM354_RS09975 990ca7a97519e2509c8b201e9a4f93b5 267 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 29 46 - T 29-03-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AM354_RS23755 d0a68368a153b16ba2863c65ca32257f 248 Gene3D G3DSA:1.10.260.40 1 109 3.3E-4 T 29-03-2018 AM354_RS23755 d0a68368a153b16ba2863c65ca32257f 248 SUPERFAMILY SSF51306 112 244 2.62E-19 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AM354_RS23755 d0a68368a153b16ba2863c65ca32257f 248 Pfam PF00717 Peptidase S24-like 159 225 3.1E-10 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AM354_RS23755 d0a68368a153b16ba2863c65ca32257f 248 Gene3D G3DSA:2.10.109.10 110 245 7.6E-17 T 29-03-2018 AM354_RS21635 4d07e4d026c1593807de98d99bce8f3c 277 SUPERFAMILY SSF52096 4 252 1.87E-44 T 29-03-2018 IPR029045 ClpP/crotonase-like domain AM354_RS21635 4d07e4d026c1593807de98d99bce8f3c 277 Gene3D G3DSA:3.90.226.10 1 269 1.7E-42 T 29-03-2018 AM354_RS21635 4d07e4d026c1593807de98d99bce8f3c 277 Pfam PF00378 Enoyl-CoA hydratase/isomerase 15 223 6.9E-27 T 29-03-2018 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AM354_RS11660 5abe62fe5feef90c5abd4b747dc70038 230 SUPERFAMILY SSF55729 17 213 1.17E-37 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS11660 5abe62fe5feef90c5abd4b747dc70038 230 PRINTS PR01549 Autoinducer synthesis protein signature 55 77 1.4E-47 T 29-03-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 AM354_RS11660 5abe62fe5feef90c5abd4b747dc70038 230 PRINTS PR01549 Autoinducer synthesis protein signature 35 54 1.4E-47 T 29-03-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 AM354_RS11660 5abe62fe5feef90c5abd4b747dc70038 230 PRINTS PR01549 Autoinducer synthesis protein signature 157 178 1.4E-47 T 29-03-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 AM354_RS11660 5abe62fe5feef90c5abd4b747dc70038 230 PRINTS PR01549 Autoinducer synthesis protein signature 78 96 1.4E-47 T 29-03-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 AM354_RS11660 5abe62fe5feef90c5abd4b747dc70038 230 PRINTS PR01549 Autoinducer synthesis protein signature 179 196 1.4E-47 T 29-03-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 AM354_RS11660 5abe62fe5feef90c5abd4b747dc70038 230 PRINTS PR01549 Autoinducer synthesis protein signature 110 122 1.4E-47 T 29-03-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 AM354_RS11660 5abe62fe5feef90c5abd4b747dc70038 230 PRINTS PR01549 Autoinducer synthesis protein signature 135 156 1.4E-47 T 29-03-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 AM354_RS11660 5abe62fe5feef90c5abd4b747dc70038 230 Pfam PF00765 Autoinducer synthase 25 203 6.8E-64 T 29-03-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 AM354_RS11660 5abe62fe5feef90c5abd4b747dc70038 230 ProSitePatterns PS00949 Autoinducer synthase family signature. 39 64 - T 29-03-2018 IPR018311 Autoinducer synthesis, conserved site KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 AM354_RS11660 5abe62fe5feef90c5abd4b747dc70038 230 Gene3D G3DSA:3.40.630.30 17 227 3.4E-36 T 29-03-2018 AM354_RS13895 d1d8218e9104a471a39b8964a6f8cd24 454 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 11 454 2.6E-98 T 29-03-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 AM354_RS13895 d1d8218e9104a471a39b8964a6f8cd24 454 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 216 371 2.2E-22 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AM354_RS13895 d1d8218e9104a471a39b8964a6f8cd24 454 Pfam PF12631 MnmE helical domain 123 451 2.2E-60 T 29-03-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 AM354_RS13895 d1d8218e9104a471a39b8964a6f8cd24 454 Gene3D G3DSA:1.20.120.430 122 280 2.3E-27 T 29-03-2018 AM354_RS13895 d1d8218e9104a471a39b8964a6f8cd24 454 Pfam PF01926 50S ribosome-binding GTPase 218 309 4.1E-24 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 AM354_RS13895 d1d8218e9104a471a39b8964a6f8cd24 454 Gene3D G3DSA:1.20.120.430 281 454 3.4E-34 T 29-03-2018 AM354_RS13895 d1d8218e9104a471a39b8964a6f8cd24 454 Pfam PF10396 GTP-binding protein TrmE N-terminus 6 120 1.4E-34 T 29-03-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 AM354_RS13895 d1d8218e9104a471a39b8964a6f8cd24 454 SUPERFAMILY SSF116878 379 454 5.36E-51 T 29-03-2018 AM354_RS13895 d1d8218e9104a471a39b8964a6f8cd24 454 SUPERFAMILY SSF116878 121 220 5.36E-51 T 29-03-2018 AM354_RS13895 d1d8218e9104a471a39b8964a6f8cd24 454 SUPERFAMILY SSF52540 72 152 1.49E-45 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS13895 d1d8218e9104a471a39b8964a6f8cd24 454 SUPERFAMILY SSF52540 188 372 1.49E-45 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS13895 d1d8218e9104a471a39b8964a6f8cd24 454 Gene3D G3DSA:3.30.1360.120 1 121 1.2E-40 T 29-03-2018 AM354_RS13895 d1d8218e9104a471a39b8964a6f8cd24 454 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 5 454 33.083 T 29-03-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 AM354_RS02225 cf20c7f849c93617a63979bcc936a0b0 488 SUPERFAMILY SSF53720 3 477 4.32E-160 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM354_RS02225 cf20c7f849c93617a63979bcc936a0b0 488 Pfam PF00171 Aldehyde dehydrogenase family 16 472 4.7E-167 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM354_RS02225 cf20c7f849c93617a63979bcc936a0b0 488 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 247 254 - T 29-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AM354_RS02225 cf20c7f849c93617a63979bcc936a0b0 488 Gene3D G3DSA:3.40.309.10 264 458 7.7E-70 T 29-03-2018 AM354_RS02225 cf20c7f849c93617a63979bcc936a0b0 488 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 275 286 - T 29-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AM354_RS02225 cf20c7f849c93617a63979bcc936a0b0 488 Gene3D G3DSA:3.40.605.10 1 263 1.8E-95 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM354_RS23615 31e5b12f99f3f210e2cf465390857cd7 391 Pfam PF07690 Major Facilitator Superfamily 20 343 7.4E-31 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS23615 31e5b12f99f3f210e2cf465390857cd7 391 TIGRFAM TIGR00899 2A0120: sugar efflux transporter 18 389 8.8E-168 T 29-03-2018 IPR004750 Sugar efflux GO:0008643|GO:0015542|GO:0016021 AM354_RS23615 31e5b12f99f3f210e2cf465390857cd7 391 Gene3D G3DSA:1.20.1250.20 4 201 1.1E-19 T 29-03-2018 AM354_RS23615 31e5b12f99f3f210e2cf465390857cd7 391 SUPERFAMILY SSF103473 16 389 7.46E-49 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS23615 31e5b12f99f3f210e2cf465390857cd7 391 Gene3D G3DSA:1.20.1250.20 202 391 1.9E-22 T 29-03-2018 AM354_RS02195 501ac4d676b30894a7aaee747f4beaa2 303 Hamap MF_00653 Coenzyme PQQ synthesis protein B [pqqB]. 1 303 157.202 T 29-03-2018 IPR011842 Coenzyme PQQ biosynthesis protein B GO:0006810|GO:0018189 AM354_RS02195 501ac4d676b30894a7aaee747f4beaa2 303 Pfam PF12706 Beta-lactamase superfamily domain 50 270 1.1E-37 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS02195 501ac4d676b30894a7aaee747f4beaa2 303 Gene3D G3DSA:3.60.15.10 1 303 1.4E-42 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS02195 501ac4d676b30894a7aaee747f4beaa2 303 TIGRFAM TIGR02108 PQQ_syn_pqqB: coenzyme PQQ biosynthesis protein B 2 303 4.2E-118 T 29-03-2018 IPR011842 Coenzyme PQQ biosynthesis protein B GO:0006810|GO:0018189 AM354_RS02195 501ac4d676b30894a7aaee747f4beaa2 303 SUPERFAMILY SSF56281 1 303 7.22E-61 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS19100 7ec66ff0af2ac3de96754b28319bc4f0 732 Pfam PF07715 TonB-dependent Receptor Plug Domain 87 189 7.2E-25 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS19100 7ec66ff0af2ac3de96754b28319bc4f0 732 Gene3D G3DSA:2.40.170.20 202 732 2.5E-84 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS19100 7ec66ff0af2ac3de96754b28319bc4f0 732 Gene3D G3DSA:2.170.130.10 39 201 8.3E-32 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS19100 7ec66ff0af2ac3de96754b28319bc4f0 732 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 715 732 - T 29-03-2018 IPR010917 TonB-dependent receptor, conserved site AM354_RS19100 7ec66ff0af2ac3de96754b28319bc4f0 732 SUPERFAMILY SSF56935 44 732 3.36E-142 T 29-03-2018 AM354_RS19100 7ec66ff0af2ac3de96754b28319bc4f0 732 Pfam PF00593 TonB dependent receptor 278 731 1.2E-66 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS19100 7ec66ff0af2ac3de96754b28319bc4f0 732 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 90 732 2.9E-157 T 29-03-2018 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 AM354_RS20200 e1b0dbc79eb13b13cc32da6525008440 252 SUPERFAMILY SSF64005 13 238 1.96E-86 T 29-03-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 AM354_RS20200 e1b0dbc79eb13b13cc32da6525008440 252 Gene3D G3DSA:3.40.1180.10 1 246 2.8E-89 T 29-03-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 AM354_RS20200 e1b0dbc79eb13b13cc32da6525008440 252 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 188 205 - T 29-03-2018 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199 AM354_RS20200 e1b0dbc79eb13b13cc32da6525008440 252 Pfam PF01255 Putative undecaprenyl diphosphate synthase 22 242 3.1E-77 T 29-03-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 AM354_RS20200 e1b0dbc79eb13b13cc32da6525008440 252 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 16 242 1.2E-101 T 29-03-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 AM354_RS20200 e1b0dbc79eb13b13cc32da6525008440 252 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 15 243 40.139 T 29-03-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 AM354_RS17300 53206c35cc2981e007bf4e090bf967c4 206 PIRSF PIRSF006158 1 205 8.3E-72 T 29-03-2018 IPR016476 SH3 domain protein AM354_RS17300 53206c35cc2981e007bf4e090bf967c4 206 Pfam PF08239 Bacterial SH3 domain 34 85 6.2E-9 T 29-03-2018 IPR003646 SH3-like domain, bacterial-type AM354_RS17300 53206c35cc2981e007bf4e090bf967c4 206 TIGRFAM TIGR04211 SH3_and_anchor: SH3 domain protein 27 204 5.8E-56 T 29-03-2018 IPR016476 SH3 domain protein AM354_RS17300 53206c35cc2981e007bf4e090bf967c4 206 Gene3D G3DSA:1.20.5.50 94 170 1.6E-7 T 29-03-2018 AM354_RS17300 53206c35cc2981e007bf4e090bf967c4 206 SMART SM00287 23 89 2.2E-9 T 29-03-2018 IPR003646 SH3-like domain, bacterial-type AM354_RS17300 53206c35cc2981e007bf4e090bf967c4 206 Gene3D G3DSA:2.30.30.410 15 93 1.8E-9 T 29-03-2018 AM354_RS23160 35fd8aadc968a08adb975d7e6a3386b9 180 Gene3D G3DSA:3.30.70.20 20 70 4.3E-7 T 29-03-2018 AM354_RS23160 35fd8aadc968a08adb975d7e6a3386b9 180 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 16 137 1.6E-51 T 29-03-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23160 35fd8aadc968a08adb975d7e6a3386b9 180 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 99 110 - T 29-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM354_RS23160 35fd8aadc968a08adb975d7e6a3386b9 180 Gene3D G3DSA:3.30.70.20 71 103 7.6E-15 T 29-03-2018 AM354_RS23160 35fd8aadc968a08adb975d7e6a3386b9 180 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 7 147 27.072 T 29-03-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23160 35fd8aadc968a08adb975d7e6a3386b9 180 Gene3D G3DSA:3.30.70.20 104 171 4.6E-8 T 29-03-2018 AM354_RS23160 35fd8aadc968a08adb975d7e6a3386b9 180 Pfam PF12838 4Fe-4S dicluster domain 59 113 4.7E-12 T 29-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM354_RS23160 35fd8aadc968a08adb975d7e6a3386b9 180 SUPERFAMILY SSF54862 33 155 4.1E-29 T 29-03-2018 AM354_RS07450 b3430ba59b22e1501c24f1fb7eed2633 264 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 4 251 2.1E-89 T 29-03-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AM354_RS07450 b3430ba59b22e1501c24f1fb7eed2633 264 Pfam PF00557 Metallopeptidase family M24 14 243 8.5E-49 T 29-03-2018 IPR000994 Peptidase M24 AM354_RS07450 b3430ba59b22e1501c24f1fb7eed2633 264 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 169 187 - T 29-03-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AM354_RS07450 b3430ba59b22e1501c24f1fb7eed2633 264 Hamap MF_01974 Methionine aminopeptidase [map]. 4 252 37.28 T 29-03-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AM354_RS07450 b3430ba59b22e1501c24f1fb7eed2633 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 70 83 3.1E-17 T 29-03-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AM354_RS07450 b3430ba59b22e1501c24f1fb7eed2633 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 163 175 3.1E-17 T 29-03-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AM354_RS07450 b3430ba59b22e1501c24f1fb7eed2633 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 93 109 3.1E-17 T 29-03-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AM354_RS07450 b3430ba59b22e1501c24f1fb7eed2633 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 194 206 3.1E-17 T 29-03-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AM354_RS07450 b3430ba59b22e1501c24f1fb7eed2633 264 SUPERFAMILY SSF55920 4 255 6.67E-86 T 29-03-2018 IPR000994 Peptidase M24 AM354_RS07450 b3430ba59b22e1501c24f1fb7eed2633 264 Gene3D G3DSA:3.90.230.10 1 261 4.3E-80 T 29-03-2018 AM354_RS12885 b8614c5f9815b3087d537f8b43992122 241 Gene3D G3DSA:3.40.50.880 1 232 1.9E-39 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS12885 b8614c5f9815b3087d537f8b43992122 241 SUPERFAMILY SSF52317 3 222 3.21E-32 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS12885 b8614c5f9815b3087d537f8b43992122 241 Pfam PF03575 Peptidase family S51 3 205 1.1E-45 T 29-03-2018 IPR005320 Peptidase S51 GO:0006508|GO:0008236 AM354_RS22935 4f830623e71c2fabf830333ed8ea2816 306 Pfam PF00892 EamA-like transporter family 150 280 1.0E-20 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM354_RS22935 4f830623e71c2fabf830333ed8ea2816 306 Pfam PF00892 EamA-like transporter family 4 135 1.5E-19 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM354_RS22935 4f830623e71c2fabf830333ed8ea2816 306 SUPERFAMILY SSF103481 36 139 1.57E-10 T 29-03-2018 AM354_RS22935 4f830623e71c2fabf830333ed8ea2816 306 SUPERFAMILY SSF103481 186 283 1.44E-12 T 29-03-2018 AM354_RS10735 2155bb94749687eb69f324bba3e3e14e 273 Pfam PF05099 Tellurite resistance protein TerB 42 172 8.5E-14 T 29-03-2018 IPR007791 Co-chaperone DjlA, N-terminal AM354_RS10735 2155bb94749687eb69f324bba3e3e14e 273 Gene3D G3DSA:1.10.3680.10 32 189 7.5E-27 T 29-03-2018 IPR029024 TerB-like AM354_RS10735 2155bb94749687eb69f324bba3e3e14e 273 SMART SM00271 206 271 1.6E-14 T 29-03-2018 IPR001623 DnaJ domain AM354_RS10735 2155bb94749687eb69f324bba3e3e14e 273 PRINTS PR00625 DnaJ domain signature 227 242 2.5E-6 T 29-03-2018 IPR001623 DnaJ domain AM354_RS10735 2155bb94749687eb69f324bba3e3e14e 273 PRINTS PR00625 DnaJ domain signature 209 227 2.5E-6 T 29-03-2018 IPR001623 DnaJ domain AM354_RS10735 2155bb94749687eb69f324bba3e3e14e 273 PRINTS PR00625 DnaJ domain signature 251 271 2.5E-6 T 29-03-2018 IPR001623 DnaJ domain AM354_RS10735 2155bb94749687eb69f324bba3e3e14e 273 Gene3D G3DSA:1.10.287.110 194 271 5.1E-14 T 29-03-2018 IPR001623 DnaJ domain AM354_RS10735 2155bb94749687eb69f324bba3e3e14e 273 Hamap MF_01153 Co-chaperone protein DjlA [djlA]. 3 272 39.109 T 29-03-2018 IPR023749 Co-chaperone DjlA GO:0051087 AM354_RS10735 2155bb94749687eb69f324bba3e3e14e 273 SUPERFAMILY SSF46565 133 269 4.08E-29 T 29-03-2018 IPR001623 DnaJ domain AM354_RS10735 2155bb94749687eb69f324bba3e3e14e 273 Pfam PF00226 DnaJ domain 210 269 1.6E-9 T 29-03-2018 IPR001623 DnaJ domain AM354_RS06235 437be115bccfb4fa2ee61a4ba22b05ae 445 SUPERFAMILY SSF53335 12 191 3.22E-24 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS06235 437be115bccfb4fa2ee61a4ba22b05ae 445 Pfam PF13489 Methyltransferase domain 31 143 4.8E-13 T 29-03-2018 AM354_RS06235 437be115bccfb4fa2ee61a4ba22b05ae 445 Gene3D G3DSA:3.40.50.150 3 171 4.4E-20 T 29-03-2018 AM354_RS06235 437be115bccfb4fa2ee61a4ba22b05ae 445 Gene3D G3DSA:1.20.5.340 238 415 6.5E-6 T 29-03-2018 AM354_RS03220 38eebd1f241fd3ff8274628dc01053ac 123 TIGRFAM TIGR01997 sufA_proteo: FeS assembly scaffold SufA 18 123 4.3E-42 T 29-03-2018 IPR011298 FeS assembly scaffold SufA GO:0097428 AM354_RS03220 38eebd1f241fd3ff8274628dc01053ac 123 Pfam PF01521 Iron-sulphur cluster biosynthesis 19 119 1.8E-18 T 29-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AM354_RS03220 38eebd1f241fd3ff8274628dc01053ac 123 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 19 122 3.7E-33 T 29-03-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 AM354_RS03220 38eebd1f241fd3ff8274628dc01053ac 123 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 104 121 - T 29-03-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 AM354_RS03220 38eebd1f241fd3ff8274628dc01053ac 123 Gene3D G3DSA:2.60.300.12 19 123 2.4E-32 T 29-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AM354_RS03220 38eebd1f241fd3ff8274628dc01053ac 123 SUPERFAMILY SSF89360 19 112 2.35E-27 T 29-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AM354_RS17005 4967b46702077351b0e8cd6bc2bff9d0 130 ProSitePatterns PS00360 Ribosomal protein S9 signature. 69 87 - T 29-03-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 AM354_RS17005 4967b46702077351b0e8cd6bc2bff9d0 130 Pfam PF00380 Ribosomal protein S9/S16 10 130 1.3E-46 T 29-03-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 AM354_RS17005 4967b46702077351b0e8cd6bc2bff9d0 130 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 130 33.979 T 29-03-2018 IPR023035 Ribosomal protein S9, bacterial/plastid AM354_RS17005 4967b46702077351b0e8cd6bc2bff9d0 130 Gene3D G3DSA:3.30.230.10 3 130 1.4E-52 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AM354_RS17005 4967b46702077351b0e8cd6bc2bff9d0 130 SUPERFAMILY SSF54211 5 130 2.69E-49 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM354_RS18485 fed048199b593469f2bfb07ddf06efa7 205 Gene3D G3DSA:3.40.50.1390 2 128 4.6E-32 T 29-03-2018 AM354_RS18485 fed048199b593469f2bfb07ddf06efa7 205 ProSitePatterns PS00397 Site-specific recombinases active site. 6 14 - T 29-03-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 AM354_RS18485 fed048199b593469f2bfb07ddf06efa7 205 SUPERFAMILY SSF53041 3 159 2.22E-28 T 29-03-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AM354_RS18485 fed048199b593469f2bfb07ddf06efa7 205 SMART SM00857 3 159 8.2E-39 T 29-03-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AM354_RS18485 fed048199b593469f2bfb07ddf06efa7 205 Gene3D G3DSA:1.20.5.40 129 154 2.1E-4 T 29-03-2018 AM354_RS18485 fed048199b593469f2bfb07ddf06efa7 205 ProSitePatterns PS00398 Site-specific recombinases signature 2. 62 74 - T 29-03-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 AM354_RS18485 fed048199b593469f2bfb07ddf06efa7 205 Gene3D G3DSA:1.10.10.60 155 202 2.1E-7 T 29-03-2018 AM354_RS18485 fed048199b593469f2bfb07ddf06efa7 205 Pfam PF00239 Resolvase, N terminal domain 3 159 8.1E-28 T 29-03-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AM354_RS01110 349ee1c14f00ed5d8feb4525b5d32872 688 Pfam PF02554 Carbon starvation protein CstA 32 408 2.0E-172 T 29-03-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 AM354_RS01110 349ee1c14f00ed5d8feb4525b5d32872 688 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 463 591 2.3E-32 T 29-03-2018 IPR025299 CstA, C-terminal domain AM354_RS11895 ad040d07129ba1d51e861ea57a9853bc 89 SUPERFAMILY SSF82771 4 64 6.67E-10 T 29-03-2018 IPR000305 GIY-YIG nuclease superfamily AM354_RS11895 ad040d07129ba1d51e861ea57a9853bc 89 Pfam PF01541 GIY-YIG catalytic domain 7 65 9.1E-10 T 29-03-2018 IPR000305 GIY-YIG nuclease superfamily AM354_RS09955 ed001589e3fbe295fba549d0b5976c1b 251 PIRSF PIRSF005457 1 251 3.9E-89 T 29-03-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 AM354_RS09955 ed001589e3fbe295fba549d0b5976c1b 251 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 4 251 3.8E-103 T 29-03-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 AM354_RS09955 ed001589e3fbe295fba549d0b5976c1b 251 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 1 251 45.841 T 29-03-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 AM354_RS09955 ed001589e3fbe295fba549d0b5976c1b 251 Gene3D G3DSA:3.60.15.10 1 251 1.6E-70 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS09955 ed001589e3fbe295fba549d0b5976c1b 251 SMART SM00849 11 165 1.8E-36 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS09955 ed001589e3fbe295fba549d0b5976c1b 251 Pfam PF00753 Metallo-beta-lactamase superfamily 13 165 1.1E-17 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS09955 ed001589e3fbe295fba549d0b5976c1b 251 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 166 251 2.2E-25 T 29-03-2018 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 AM354_RS09955 ed001589e3fbe295fba549d0b5976c1b 251 SUPERFAMILY SSF56281 1 250 8.26E-69 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS25565 e64880bdd01ec8e9d35e63dc6ec2c188 367 Pfam PF01699 Sodium/calcium exchanger protein 225 365 3.6E-9 T 29-03-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 AM354_RS25565 e64880bdd01ec8e9d35e63dc6ec2c188 367 Pfam PF01699 Sodium/calcium exchanger protein 43 193 1.2E-13 T 29-03-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 AM354_RS25565 e64880bdd01ec8e9d35e63dc6ec2c188 367 TIGRFAM TIGR00846 caca2: calcium/proton exchanger 12 366 1.2E-105 T 29-03-2018 IPR004713 Calcium/proton exchanger GO:0006812|GO:0008324|GO:0016021|GO:0055085 AM354_RS08715 a4942b3c11dc0c9d09f7f78a1a085281 94 Gene3D G3DSA:3.10.20.30 3 94 2.5E-17 T 29-03-2018 IPR012675 Beta-grasp domain AM354_RS08715 a4942b3c11dc0c9d09f7f78a1a085281 94 SUPERFAMILY SSF54292 22 93 2.1E-19 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM354_RS08715 a4942b3c11dc0c9d09f7f78a1a085281 94 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 24 84 1.7E-9 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM354_RS10815 9d0a6bd2a15f566d53b384a158100052 273 Gene3D G3DSA:3.40.50.720 1 126 6.7E-30 T 29-03-2018 AM354_RS10815 9d0a6bd2a15f566d53b384a158100052 273 Gene3D G3DSA:3.30.360.10 130 238 6.7E-35 T 29-03-2018 AM354_RS10815 9d0a6bd2a15f566d53b384a158100052 273 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 132 268 3.8E-43 T 29-03-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AM354_RS10815 9d0a6bd2a15f566d53b384a158100052 273 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 6 268 4.0E-106 T 29-03-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AM354_RS10815 9d0a6bd2a15f566d53b384a158100052 273 PIRSF PIRSF000161 4 272 1.2E-90 T 29-03-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AM354_RS10815 9d0a6bd2a15f566d53b384a158100052 273 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 6 269 35.277 T 29-03-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AM354_RS10815 9d0a6bd2a15f566d53b384a158100052 273 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 154 171 - T 29-03-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AM354_RS10815 9d0a6bd2a15f566d53b384a158100052 273 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 6 129 2.7E-42 T 29-03-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AM354_RS10815 9d0a6bd2a15f566d53b384a158100052 273 SUPERFAMILY SSF51735 4 130 8.13E-53 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS10815 9d0a6bd2a15f566d53b384a158100052 273 SUPERFAMILY SSF51735 240 272 8.13E-53 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS10815 9d0a6bd2a15f566d53b384a158100052 273 SUPERFAMILY SSF55347 131 240 5.01E-37 T 29-03-2018 AM354_RS14675 15b15bad2f607f2a84b68792400f4dca 210 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 58 2.4E-7 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS14675 15b15bad2f607f2a84b68792400f4dca 210 Gene3D G3DSA:1.10.10.60 48 81 5.3E-7 T 29-03-2018 AM354_RS14675 15b15bad2f607f2a84b68792400f4dca 210 Gene3D G3DSA:1.10.357.10 82 190 6.5E-6 T 29-03-2018 AM354_RS14675 15b15bad2f607f2a84b68792400f4dca 210 Gene3D G3DSA:1.10.10.60 2 47 4.6E-15 T 29-03-2018 AM354_RS14675 15b15bad2f607f2a84b68792400f4dca 210 SUPERFAMILY SSF46689 3 77 2.32E-12 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS14675 15b15bad2f607f2a84b68792400f4dca 210 Hamap MF_01190 HTH-type transcriptional repressor FabR [fabR]. 1 209 53.217 T 29-03-2018 IPR023764 Transcriptional repressor HTH, FabR AM354_RS02310 46901ddd3e56a8833b08573c6a8310cc 412 SUPERFAMILY SSF51905 10 151 9.98E-27 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS02310 46901ddd3e56a8833b08573c6a8310cc 412 Gene3D G3DSA:3.50.50.60 134 265 7.0E-33 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS02310 46901ddd3e56a8833b08573c6a8310cc 412 Gene3D G3DSA:3.50.50.60 8 133 1.1E-13 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS02310 46901ddd3e56a8833b08573c6a8310cc 412 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 10 313 1.3E-13 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS02310 46901ddd3e56a8833b08573c6a8310cc 412 SUPERFAMILY SSF51905 189 343 3.66E-23 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS02310 46901ddd3e56a8833b08573c6a8310cc 412 SUPERFAMILY SSF51905 7 90 3.66E-23 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS15875 5ae4b52f33de36ad0a3c155695dd4f5e 262 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 2 230 4.8E-25 T 29-03-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 AM354_RS15875 5ae4b52f33de36ad0a3c155695dd4f5e 262 Gene3D G3DSA:3.10.310.10 2 127 1.7E-24 T 29-03-2018 AM354_RS15875 5ae4b52f33de36ad0a3c155695dd4f5e 262 Pfam PF02567 Phenazine biosynthesis-like protein 9 252 6.0E-44 T 29-03-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 AM354_RS15875 5ae4b52f33de36ad0a3c155695dd4f5e 262 SUPERFAMILY SSF54506 1 261 1.47E-65 T 29-03-2018 AM354_RS15875 5ae4b52f33de36ad0a3c155695dd4f5e 262 PIRSF PIRSF016184 1 262 1.0E-44 T 29-03-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 AM354_RS15875 5ae4b52f33de36ad0a3c155695dd4f5e 262 Gene3D G3DSA:3.10.310.10 128 250 2.4E-32 T 29-03-2018 AM354_RS25655 327676435ee5afc2e79883d3f027340f 299 Gene3D G3DSA:1.10.10.10 4 97 1.2E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS25655 327676435ee5afc2e79883d3f027340f 299 Pfam PF00486 Transcriptional regulatory protein, C terminal 19 91 1.2E-16 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS25655 327676435ee5afc2e79883d3f027340f 299 SUPERFAMILY SSF46894 15 92 5.39E-15 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS25655 327676435ee5afc2e79883d3f027340f 299 SMART SM00862 19 92 2.5E-13 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS21750 3d52f2c9ba73a0c5fc39aa2dc075d151 259 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM354_RS21750 3d52f2c9ba73a0c5fc39aa2dc075d151 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 1.1E-17 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS21750 3d52f2c9ba73a0c5fc39aa2dc075d151 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 220 240 1.1E-17 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS21750 3d52f2c9ba73a0c5fc39aa2dc075d151 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 1.1E-17 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS21750 3d52f2c9ba73a0c5fc39aa2dc075d151 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 1.1E-17 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS21750 3d52f2c9ba73a0c5fc39aa2dc075d151 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 1.1E-17 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS21750 3d52f2c9ba73a0c5fc39aa2dc075d151 259 SUPERFAMILY SSF51735 4 258 4.09E-64 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS21750 3d52f2c9ba73a0c5fc39aa2dc075d151 259 Gene3D G3DSA:3.40.50.720 1 259 5.7E-53 T 29-03-2018 AM354_RS21750 3d52f2c9ba73a0c5fc39aa2dc075d151 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 1.9E-7 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS21750 3d52f2c9ba73a0c5fc39aa2dc075d151 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 1.9E-7 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS21750 3d52f2c9ba73a0c5fc39aa2dc075d151 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 1.9E-7 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS21750 3d52f2c9ba73a0c5fc39aa2dc075d151 259 Pfam PF00106 short chain dehydrogenase 4 197 1.4E-46 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS02990 98baf2dca8ceb288bacefa5137847223 294 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 7 285 1.0E-78 T 29-03-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AM354_RS02990 98baf2dca8ceb288bacefa5137847223 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 103 119 2.5E-19 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM354_RS02990 98baf2dca8ceb288bacefa5137847223 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 128 145 2.5E-19 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM354_RS02990 98baf2dca8ceb288bacefa5137847223 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 71 89 2.5E-19 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM354_RS02990 98baf2dca8ceb288bacefa5137847223 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 36 57 2.5E-19 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM354_RS02990 98baf2dca8ceb288bacefa5137847223 294 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 39 56 - T 29-03-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AM354_RS02990 98baf2dca8ceb288bacefa5137847223 294 Pfam PF00701 Dihydrodipicolinate synthetase family 4 285 2.2E-66 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM354_RS02990 98baf2dca8ceb288bacefa5137847223 294 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 133 163 - T 29-03-2018 IPR020625 Schiff base-forming aldolase, active site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 AM354_RS02990 98baf2dca8ceb288bacefa5137847223 294 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 3 285 47.623 T 29-03-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AM354_RS02990 98baf2dca8ceb288bacefa5137847223 294 SUPERFAMILY SSF51569 2 286 1.67E-83 T 29-03-2018 AM354_RS02990 98baf2dca8ceb288bacefa5137847223 294 Gene3D G3DSA:3.20.20.70 1 293 7.1E-82 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS02990 98baf2dca8ceb288bacefa5137847223 294 PIRSF PIRSF001365 1 292 1.1E-78 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM354_RS02990 98baf2dca8ceb288bacefa5137847223 294 SMART SM01130 3 287 5.8E-103 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM354_RS12180 230c6c371898da019cbeb9afae934ed4 212 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 44 199 6.6E-70 T 29-03-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AM354_RS12180 230c6c371898da019cbeb9afae934ed4 212 Pfam PF01625 Peptide methionine sulfoxide reductase 46 199 2.6E-67 T 29-03-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AM354_RS12180 230c6c371898da019cbeb9afae934ed4 212 Gene3D G3DSA:3.30.1060.10 26 203 9.1E-79 T 29-03-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AM354_RS12180 230c6c371898da019cbeb9afae934ed4 212 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 43 205 39.049 T 29-03-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AM354_RS12180 230c6c371898da019cbeb9afae934ed4 212 SUPERFAMILY SSF55068 7 208 5.36E-83 T 29-03-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AM354_RS02720 de7b0ba69ea1be2f04c3b4f5bd8a933e 302 Gene3D G3DSA:3.40.190.10 183 300 7.2E-20 T 29-03-2018 AM354_RS02720 de7b0ba69ea1be2f04c3b4f5bd8a933e 302 SUPERFAMILY SSF53850 27 301 5.97E-61 T 29-03-2018 AM354_RS02720 de7b0ba69ea1be2f04c3b4f5bd8a933e 302 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 27 298 5.0E-63 T 29-03-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 AM354_RS02720 de7b0ba69ea1be2f04c3b4f5bd8a933e 302 Gene3D G3DSA:3.40.190.10 16 182 1.1E-28 T 29-03-2018 AM354_RS02820 f92b09849340fa1e933dbaefb1756ee6 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 2.6E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS02820 f92b09849340fa1e933dbaefb1756ee6 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 2.6E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS02820 f92b09849340fa1e933dbaefb1756ee6 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 2.6E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS02820 f92b09849340fa1e933dbaefb1756ee6 302 SUPERFAMILY SSF46785 6 113 2.61E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS02820 f92b09849340fa1e933dbaefb1756ee6 302 Gene3D G3DSA:3.40.190.10 177 267 4.2E-28 T 29-03-2018 AM354_RS02820 f92b09849340fa1e933dbaefb1756ee6 302 Gene3D G3DSA:3.40.190.10 89 176 8.8E-12 T 29-03-2018 AM354_RS02820 f92b09849340fa1e933dbaefb1756ee6 302 Gene3D G3DSA:1.10.10.10 3 85 4.2E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS02820 f92b09849340fa1e933dbaefb1756ee6 302 Pfam PF03466 LysR substrate binding domain 89 295 3.1E-37 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS02820 f92b09849340fa1e933dbaefb1756ee6 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 5.3E-23 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS02820 f92b09849340fa1e933dbaefb1756ee6 302 SUPERFAMILY SSF53850 90 298 2.33E-39 T 29-03-2018 AM354_RS23990 08f7117c5c018552899e13883e8bd661 291 SMART SM00382 30 261 4.1E-11 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS23990 08f7117c5c018552899e13883e8bd661 291 SUPERFAMILY SSF52540 4 66 6.68E-58 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS23990 08f7117c5c018552899e13883e8bd661 291 SUPERFAMILY SSF52540 99 283 6.68E-58 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS23990 08f7117c5c018552899e13883e8bd661 291 ProSitePatterns PS00211 ABC transporters family signature. 184 198 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS23990 08f7117c5c018552899e13883e8bd661 291 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 262 283 2.5E-10 T 29-03-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AM354_RS23990 08f7117c5c018552899e13883e8bd661 291 Gene3D G3DSA:3.40.50.300 1 289 1.4E-55 T 29-03-2018 AM354_RS23990 08f7117c5c018552899e13883e8bd661 291 Pfam PF00005 ABC transporter 21 211 3.2E-26 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS12125 352ebe5a8ebd1ddd7683fa8d70a48761 312 Gene3D G3DSA:3.40.50.720 2 147 1.7E-40 T 29-03-2018 AM354_RS12125 352ebe5a8ebd1ddd7683fa8d70a48761 312 SUPERFAMILY SSF56327 146 311 4.79E-43 T 29-03-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AM354_RS12125 352ebe5a8ebd1ddd7683fa8d70a48761 312 Hamap MF_01516 Malate dehydrogenase [mdh]. 1 311 60.45 T 29-03-2018 IPR023958 Malate dehydrogenase, type 1, bacterial GO:0006099|GO:0030060|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 AM354_RS12125 352ebe5a8ebd1ddd7683fa8d70a48761 312 Gene3D G3DSA:3.90.110.10 148 312 9.8E-42 T 29-03-2018 AM354_RS12125 352ebe5a8ebd1ddd7683fa8d70a48761 312 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 147 309 9.4E-52 T 29-03-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 AM354_RS12125 352ebe5a8ebd1ddd7683fa8d70a48761 312 TIGRFAM TIGR01772 MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 2 311 2.9E-138 T 29-03-2018 IPR010097 Malate dehydrogenase, type 1 GO:0006099|GO:0030060 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383|Reactome: R-HSA-70263|Reactome: R-HSA-71403 AM354_RS12125 352ebe5a8ebd1ddd7683fa8d70a48761 312 PIRSF PIRSF000102 1 311 3.4E-60 T 29-03-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AM354_RS12125 352ebe5a8ebd1ddd7683fa8d70a48761 312 SUPERFAMILY SSF51735 1 145 3.08E-39 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS12125 352ebe5a8ebd1ddd7683fa8d70a48761 312 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 1 145 4.8E-46 T 29-03-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 AM354_RS03265 936f53b0e3c11556aebbba1e9104ca9b 348 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 5 348 4.8E-170 T 29-03-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 AM354_RS03265 936f53b0e3c11556aebbba1e9104ca9b 348 Gene3D G3DSA:3.20.20.70 7 348 8.0E-121 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS03265 936f53b0e3c11556aebbba1e9104ca9b 348 SUPERFAMILY SSF51569 7 347 5.02E-131 T 29-03-2018 AM354_RS03265 936f53b0e3c11556aebbba1e9104ca9b 348 Pfam PF00793 DAHP synthetase I family 41 337 1.9E-103 T 29-03-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AM354_RS03265 936f53b0e3c11556aebbba1e9104ca9b 348 PIRSF PIRSF001361 1 348 1.5E-155 T 29-03-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 AM354_RS15220 f831f3ec7c255692ca1fb9280f418833 268 Pfam PF00717 Peptidase S24-like 181 247 3.6E-13 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AM354_RS15220 f831f3ec7c255692ca1fb9280f418833 268 SUPERFAMILY SSF51306 131 263 3.01E-25 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AM354_RS15220 f831f3ec7c255692ca1fb9280f418833 268 Gene3D G3DSA:2.10.109.10 138 266 4.4E-24 T 29-03-2018 AM354_RS15220 f831f3ec7c255692ca1fb9280f418833 268 Gene3D G3DSA:1.10.10.10 32 100 8.3E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS15220 f831f3ec7c255692ca1fb9280f418833 268 SUPERFAMILY SSF46955 32 98 1.92E-8 T 29-03-2018 IPR009061 Putative DNA-binding domain AM354_RS13900 1a2a258e71894fff1d92a925ba472d9d 437 Gene3D G3DSA:3.50.50.60 194 426 1.2E-11 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS13900 1a2a258e71894fff1d92a925ba472d9d 437 Pfam PF13434 L-lysine 6-monooxygenase (NADPH-requiring) 4 334 4.6E-114 T 29-03-2018 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase AM354_RS13900 1a2a258e71894fff1d92a925ba472d9d 437 SUPERFAMILY SSF51905 177 192 2.81E-7 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS13900 1a2a258e71894fff1d92a925ba472d9d 437 SUPERFAMILY SSF51905 279 408 2.81E-7 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS13900 1a2a258e71894fff1d92a925ba472d9d 437 SUPERFAMILY SSF51905 1 248 6.48E-24 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS13900 1a2a258e71894fff1d92a925ba472d9d 437 Gene3D G3DSA:3.50.50.60 1 193 4.6E-15 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS09900 e762ebf61b74cf9ddb43395fade3e35a 386 Gene3D G3DSA:3.90.1150.10 272 386 1.0E-24 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS09900 e762ebf61b74cf9ddb43395fade3e35a 386 Gene3D G3DSA:3.40.640.10 45 271 6.9E-49 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS09900 e762ebf61b74cf9ddb43395fade3e35a 386 SUPERFAMILY SSF53383 11 385 2.02E-97 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS09900 e762ebf61b74cf9ddb43395fade3e35a 386 Pfam PF00155 Aminotransferase class I and II 32 383 4.7E-54 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM354_RS13975 336776b8c5ee94e55e73ca8ba86bf5a5 609 SUPERFAMILY SSF53697 245 609 4.64E-114 T 29-03-2018 AM354_RS13975 336776b8c5ee94e55e73ca8ba86bf5a5 609 Gene3D G3DSA:3.60.20.10 2 239 2.1E-68 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AM354_RS13975 336776b8c5ee94e55e73ca8ba86bf5a5 609 Gene3D G3DSA:3.40.50.10490 240 458 1.6E-61 T 29-03-2018 AM354_RS13975 336776b8c5ee94e55e73ca8ba86bf5a5 609 SUPERFAMILY SSF56235 2 233 1.03E-74 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AM354_RS13975 336776b8c5ee94e55e73ca8ba86bf5a5 609 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 609 4.9E-265 T 29-03-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 AM354_RS13975 336776b8c5ee94e55e73ca8ba86bf5a5 609 Gene3D G3DSA:3.40.50.10490 459 607 7.9E-51 T 29-03-2018 AM354_RS13975 336776b8c5ee94e55e73ca8ba86bf5a5 609 Pfam PF13522 Glutamine amidotransferase domain 65 184 7.6E-21 T 29-03-2018 AM354_RS13975 336776b8c5ee94e55e73ca8ba86bf5a5 609 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 609 41.145 T 29-03-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 AM354_RS13975 336776b8c5ee94e55e73ca8ba86bf5a5 609 Pfam PF01380 SIS domain 462 591 3.3E-29 T 29-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AM354_RS13975 336776b8c5ee94e55e73ca8ba86bf5a5 609 Pfam PF01380 SIS domain 289 418 1.0E-32 T 29-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AM354_RS23240 3c060fbd071451d6089570a899288101 285 Hamap MF_01934 1,4-dihydroxy-2-naphthoyl-CoA synthase [menB]. 15 284 55.908 T 29-03-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 AM354_RS23240 3c060fbd071451d6089570a899288101 285 Gene3D G3DSA:1.10.12.10 225 273 1.0E-13 T 29-03-2018 IPR014748 Crontonase, C-terminal AM354_RS23240 3c060fbd071451d6089570a899288101 285 TIGRFAM TIGR01929 menB: naphthoate synthase 22 281 5.3E-150 T 29-03-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 AM354_RS23240 3c060fbd071451d6089570a899288101 285 Gene3D G3DSA:3.90.226.10 7 224 2.8E-63 T 29-03-2018 AM354_RS23240 3c060fbd071451d6089570a899288101 285 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 123 143 - T 29-03-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 AM354_RS23240 3c060fbd071451d6089570a899288101 285 Pfam PF00378 Enoyl-CoA hydratase/isomerase 32 279 6.6E-80 T 29-03-2018 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AM354_RS23240 3c060fbd071451d6089570a899288101 285 SUPERFAMILY SSF52096 16 280 1.99E-79 T 29-03-2018 IPR029045 ClpP/crotonase-like domain AM354_RS08300 a7e3d77671c11e07b25979febfe85d7b 298 Gene3D G3DSA:3.40.190.10 10 165 2.5E-31 T 29-03-2018 AM354_RS08300 a7e3d77671c11e07b25979febfe85d7b 298 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 38 267 2.8E-48 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM354_RS08300 a7e3d77671c11e07b25979febfe85d7b 298 SUPERFAMILY SSF53850 3 270 4.94E-65 T 29-03-2018 AM354_RS08300 a7e3d77671c11e07b25979febfe85d7b 298 Gene3D G3DSA:3.40.190.10 166 298 1.2E-18 T 29-03-2018 AM354_RS08300 a7e3d77671c11e07b25979febfe85d7b 298 SMART SM00062 37 269 2.6E-67 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM354_RS15160 7c594b560fd95c618b9a2dfcbb82275b 193 SUPERFAMILY SSF53955 9 176 6.47E-47 T 29-03-2018 IPR023346 Lysozyme-like domain AM354_RS15160 7c594b560fd95c618b9a2dfcbb82275b 193 Pfam PF09374 Predicted Peptidoglycan domain 108 173 5.1E-16 T 29-03-2018 IPR018537 Peptidoglycan binding domain AM354_RS15160 7c594b560fd95c618b9a2dfcbb82275b 193 Gene3D G3DSA:1.20.141.10 7 185 1.7E-51 T 29-03-2018 AM354_RS15160 7c594b560fd95c618b9a2dfcbb82275b 193 Pfam PF05838 Glycosyl hydrolase 108 15 104 2.1E-25 T 29-03-2018 IPR008565 Protein of unknown function DUF847 AM354_RS02085 83aeeb505d233b80830df91c5f08178c 391 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 155 278 1.9E-19 T 29-03-2018 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 AM354_RS02085 83aeeb505d233b80830df91c5f08178c 391 SUPERFAMILY SSF55347 148 327 4.41E-27 T 29-03-2018 AM354_RS02085 83aeeb505d233b80830df91c5f08178c 391 SUPERFAMILY SSF51735 8 174 5.4E-41 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS02085 83aeeb505d233b80830df91c5f08178c 391 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 12 143 1.7E-28 T 29-03-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AM354_RS02085 83aeeb505d233b80830df91c5f08178c 391 Gene3D G3DSA:3.30.360.10 162 391 5.2E-35 T 29-03-2018 AM354_RS02085 83aeeb505d233b80830df91c5f08178c 391 Gene3D G3DSA:3.40.50.720 1 161 4.3E-33 T 29-03-2018 AM354_RS01445 102352b61a24e978a9f0581117135d52 316 Gene3D G3DSA:3.30.1660.10 22 90 1.7E-21 T 29-03-2018 IPR025543 Dodecin-like AM354_RS01445 102352b61a24e978a9f0581117135d52 316 SUPERFAMILY SSF159871 239 316 2.75E-19 T 29-03-2018 IPR010854 Domain of unknown function DUF1471 AM354_RS01445 102352b61a24e978a9f0581117135d52 316 Gene3D G3DSA:3.30.1660.10 107 175 9.6E-19 T 29-03-2018 IPR025543 Dodecin-like AM354_RS01445 102352b61a24e978a9f0581117135d52 316 Gene3D G3DSA:3.30.1660.10 248 316 1.6E-22 T 29-03-2018 IPR025543 Dodecin-like AM354_RS01445 102352b61a24e978a9f0581117135d52 316 Pfam PF07338 Protein of unknown function (DUF1471) 119 175 5.5E-19 T 29-03-2018 IPR010854 Domain of unknown function DUF1471 AM354_RS01445 102352b61a24e978a9f0581117135d52 316 Pfam PF07338 Protein of unknown function (DUF1471) 34 90 2.8E-20 T 29-03-2018 IPR010854 Domain of unknown function DUF1471 AM354_RS01445 102352b61a24e978a9f0581117135d52 316 Pfam PF07338 Protein of unknown function (DUF1471) 260 316 8.9E-21 T 29-03-2018 IPR010854 Domain of unknown function DUF1471 AM354_RS01445 102352b61a24e978a9f0581117135d52 316 SUPERFAMILY SSF159871 108 179 3.27E-18 T 29-03-2018 IPR010854 Domain of unknown function DUF1471 AM354_RS01445 102352b61a24e978a9f0581117135d52 316 SUPERFAMILY SSF159871 3 94 5.1E-25 T 29-03-2018 IPR010854 Domain of unknown function DUF1471 AM354_RS01445 102352b61a24e978a9f0581117135d52 316 PIRSF PIRSF014774 1 316 4.9E-189 T 29-03-2018 IPR025539 YdgH protein AM354_RS25545 93a44e45d834db43510d34b6eb4d82aa 378 SUPERFAMILY SSF49503 18 118 9.01E-7 T 29-03-2018 IPR008972 Cupredoxin AM354_RS25545 93a44e45d834db43510d34b6eb4d82aa 378 Pfam PF09375 Imelysin 139 371 4.2E-41 T 29-03-2018 IPR018976 Peptidase M75, Imelysin AM354_RS25545 93a44e45d834db43510d34b6eb4d82aa 378 Pfam PF13473 Cupredoxin-like domain 15 118 5.3E-24 T 29-03-2018 IPR028096 EfeO-type cupredoxin-like domain AM354_RS12400 0772bbd7a7a6c505cdee458ca32dcfe3 598 Pfam PF00890 FAD binding domain 7 397 4.6E-114 T 29-03-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM354_RS12400 0772bbd7a7a6c505cdee458ca32dcfe3 598 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 43 52 - T 29-03-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM354_RS12400 0772bbd7a7a6c505cdee458ca32dcfe3 598 PIRSF PIRSF000171 1 574 1.6E-41 T 29-03-2018 AM354_RS12400 0772bbd7a7a6c505cdee458ca32dcfe3 598 SUPERFAMILY SSF51905 3 250 1.45E-72 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS12400 0772bbd7a7a6c505cdee458ca32dcfe3 598 SUPERFAMILY SSF51905 361 420 1.45E-72 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS12400 0772bbd7a7a6c505cdee458ca32dcfe3 598 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 7 581 7.2E-244 T 29-03-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM354_RS12400 0772bbd7a7a6c505cdee458ca32dcfe3 598 Gene3D G3DSA:4.10.80.40 550 576 4.4E-12 T 29-03-2018 AM354_RS12400 0772bbd7a7a6c505cdee458ca32dcfe3 598 Pfam PF02910 Fumarate reductase flavoprotein C-term 453 581 4.7E-38 T 29-03-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM354_RS12400 0772bbd7a7a6c505cdee458ca32dcfe3 598 Gene3D G3DSA:3.50.50.60 2 447 4.0E-64 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS12400 0772bbd7a7a6c505cdee458ca32dcfe3 598 Gene3D G3DSA:1.20.58.100 448 549 3.0E-25 T 29-03-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM354_RS12400 0772bbd7a7a6c505cdee458ca32dcfe3 598 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 3.7E-10 T 29-03-2018 AM354_RS12400 0772bbd7a7a6c505cdee458ca32dcfe3 598 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 360 382 3.7E-10 T 29-03-2018 AM354_RS12400 0772bbd7a7a6c505cdee458ca32dcfe3 598 SUPERFAMILY SSF56425 227 358 4.78E-43 T 29-03-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM354_RS12400 0772bbd7a7a6c505cdee458ca32dcfe3 598 TIGRFAM TIGR01176 fum_red_Fp: fumarate reductase (quinol), flavoprotein subunit 3 582 0.0 T 29-03-2018 IPR005884 Fumarate reductase, flavoprotein subunit GO:0009061|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.4|KEGG: 00620+1.3.5.4|KEGG: 00650+1.3.5.4|KEGG: 00720+1.3.5.4|MetaCyc: PWY-5392|MetaCyc: PWY-5913|MetaCyc: PWY-7384 AM354_RS12400 0772bbd7a7a6c505cdee458ca32dcfe3 598 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 375 382 2.1E-5 T 29-03-2018 AM354_RS12400 0772bbd7a7a6c505cdee458ca32dcfe3 598 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 2.1E-5 T 29-03-2018 AM354_RS12400 0772bbd7a7a6c505cdee458ca32dcfe3 598 SUPERFAMILY SSF46977 444 590 2.22E-45 T 29-03-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM354_RS09300 a92d13d80008bba4aa821f4d60a6dda6 320 Pfam PF12849 PBP superfamily domain 29 283 2.3E-28 T 29-03-2018 IPR024370 PBP domain AM354_RS09300 a92d13d80008bba4aa821f4d60a6dda6 320 Gene3D G3DSA:3.40.190.10 30 167 1.3E-29 T 29-03-2018 AM354_RS09300 a92d13d80008bba4aa821f4d60a6dda6 320 TIGRFAM TIGR02136 ptsS_2: phosphate binding protein 27 297 2.4E-68 T 29-03-2018 IPR011862 Phosphate binding protein GO:0006810 AM354_RS09300 a92d13d80008bba4aa821f4d60a6dda6 320 Gene3D G3DSA:3.40.190.10 188 312 8.9E-22 T 29-03-2018 AM354_RS09300 a92d13d80008bba4aa821f4d60a6dda6 320 SUPERFAMILY SSF53850 25 309 4.0E-66 T 29-03-2018 AM354_RS23410 c5d7791d0a4e16040737aa7bd9d556f7 121 Pfam PF16462 Phage tail assembly chaperone protein, TAC 10 121 7.8E-41 T 29-03-2018 IPR024410 Phage tail assembly chaperone protein, TAC AM354_RS19265 19fffae76f70cfac56bf5184fd30d042 482 Gene3D G3DSA:3.40.605.10 3 269 6.0E-106 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM354_RS19265 19fffae76f70cfac56bf5184fd30d042 482 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 30 476 7.8E-214 T 29-03-2018 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 AM354_RS19265 19fffae76f70cfac56bf5184fd30d042 482 Gene3D G3DSA:3.40.309.10 270 448 1.2E-73 T 29-03-2018 AM354_RS19265 19fffae76f70cfac56bf5184fd30d042 482 SUPERFAMILY SSF53720 8 480 1.44E-175 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM354_RS19265 19fffae76f70cfac56bf5184fd30d042 482 Pfam PF00171 Aldehyde dehydrogenase family 19 476 7.9E-174 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM354_RS19265 19fffae76f70cfac56bf5184fd30d042 482 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 282 293 - T 29-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AM354_RS19265 19fffae76f70cfac56bf5184fd30d042 482 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 254 261 - T 29-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AM354_RS03795 52f4ecb2304d32f3767da4da190445d9 70 PIRSF PIRSF002599 1 70 4.0E-24 T 29-03-2018 IPR012156 Cold shock, CspA GO:0003676 AM354_RS03795 52f4ecb2304d32f3767da4da190445d9 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 29-03-2018 IPR019844 Cold-shock conserved site AM354_RS03795 52f4ecb2304d32f3767da4da190445d9 70 Gene3D G3DSA:2.40.50.140 4 70 6.4E-27 T 29-03-2018 AM354_RS03795 52f4ecb2304d32f3767da4da190445d9 70 SMART SM00357 6 70 1.1E-29 T 29-03-2018 IPR011129 Cold shock domain GO:0003676 AM354_RS03795 52f4ecb2304d32f3767da4da190445d9 70 PRINTS PR00050 Cold shock protein signature 7 22 4.2E-17 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM354_RS03795 52f4ecb2304d32f3767da4da190445d9 70 PRINTS PR00050 Cold shock protein signature 43 61 4.2E-17 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM354_RS03795 52f4ecb2304d32f3767da4da190445d9 70 PRINTS PR00050 Cold shock protein signature 28 37 4.2E-17 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM354_RS03795 52f4ecb2304d32f3767da4da190445d9 70 SUPERFAMILY SSF50249 2 69 2.4E-24 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS03795 52f4ecb2304d32f3767da4da190445d9 70 Pfam PF00313 'Cold-shock' DNA-binding domain 5 69 1.3E-31 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM354_RS08320 36c1f2203122b994b63eab6f7cf8a6a9 310 ProSitePatterns PS01247 Inosine-uridine preferring nucleoside hydrolase family signature. 8 18 - T 29-03-2018 IPR015910 Inosine/uridine-preferring nucleoside hydrolase, conserved site GO:0016799 AM354_RS08320 36c1f2203122b994b63eab6f7cf8a6a9 310 SUPERFAMILY SSF53590 2 309 2.49E-106 T 29-03-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain AM354_RS08320 36c1f2203122b994b63eab6f7cf8a6a9 310 Gene3D G3DSA:3.90.245.10 1 310 2.3E-117 T 29-03-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain AM354_RS08320 36c1f2203122b994b63eab6f7cf8a6a9 310 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 3 300 1.9E-91 T 29-03-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain AM354_RS20175 5f52880d2c66e422043eb88db473abb0 241 Pfam PF00318 Ribosomal protein S2 9 224 1.2E-92 T 29-03-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS20175 5f52880d2c66e422043eb88db473abb0 241 Gene3D G3DSA:3.40.50.10490 5 241 3.9E-94 T 29-03-2018 AM354_RS20175 5f52880d2c66e422043eb88db473abb0 241 SUPERFAMILY SSF52313 6 235 2.49E-95 T 29-03-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain AM354_RS20175 5f52880d2c66e422043eb88db473abb0 241 PRINTS PR00395 Ribosomal protein S2 signature 87 104 6.3E-37 T 29-03-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS20175 5f52880d2c66e422043eb88db473abb0 241 PRINTS PR00395 Ribosomal protein S2 signature 158 175 6.3E-37 T 29-03-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS20175 5f52880d2c66e422043eb88db473abb0 241 PRINTS PR00395 Ribosomal protein S2 signature 175 186 6.3E-37 T 29-03-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS20175 5f52880d2c66e422043eb88db473abb0 241 PRINTS PR00395 Ribosomal protein S2 signature 196 210 6.3E-37 T 29-03-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS20175 5f52880d2c66e422043eb88db473abb0 241 PRINTS PR00395 Ribosomal protein S2 signature 6 24 6.3E-37 T 29-03-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS20175 5f52880d2c66e422043eb88db473abb0 241 PRINTS PR00395 Ribosomal protein S2 signature 37 46 6.3E-37 T 29-03-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS20175 5f52880d2c66e422043eb88db473abb0 241 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 2 225 40.838 T 29-03-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS20175 5f52880d2c66e422043eb88db473abb0 241 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 158 182 - T 29-03-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 AM354_RS20175 5f52880d2c66e422043eb88db473abb0 241 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 6 17 - T 29-03-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 AM354_RS20175 5f52880d2c66e422043eb88db473abb0 241 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 3 226 8.7E-107 T 29-03-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS03130 b309478b08077f79bcea2dc59590d60d 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 62 2.0E-20 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS03130 b309478b08077f79bcea2dc59590d60d 314 SUPERFAMILY SSF53850 88 290 3.57E-32 T 29-03-2018 AM354_RS03130 b309478b08077f79bcea2dc59590d60d 314 Gene3D G3DSA:1.10.10.10 4 85 2.2E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS03130 b309478b08077f79bcea2dc59590d60d 314 Gene3D G3DSA:3.40.190.10 89 178 5.8E-11 T 29-03-2018 AM354_RS03130 b309478b08077f79bcea2dc59590d60d 314 Pfam PF03466 LysR substrate binding domain 88 289 9.1E-28 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS03130 b309478b08077f79bcea2dc59590d60d 314 SUPERFAMILY SSF46785 6 88 7.12E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS03130 b309478b08077f79bcea2dc59590d60d 314 Gene3D G3DSA:3.40.190.10 179 265 1.1E-8 T 29-03-2018 AM354_RS01800 293296f772cb67567207ad70dd94a484 157 PIRSF PIRSF021700 1 157 1.4E-57 T 29-03-2018 IPR009725 Predicted 3-demethylubiquinone-9 3-methyltransferase AM354_RS01800 293296f772cb67567207ad70dd94a484 157 SUPERFAMILY SSF54593 3 155 2.08E-42 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS01800 293296f772cb67567207ad70dd94a484 157 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 3 117 2.9E-35 T 29-03-2018 IPR028973 PhnB-like AM354_RS01800 293296f772cb67567207ad70dd94a484 157 Gene3D G3DSA:3.10.180.10 1 130 6.1E-18 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS22085 249328a7560bd092feb3647af2f7f8e3 670 Pfam PF08351 Domain of unknown function (DUF1726) 62 147 4.0E-6 T 29-03-2018 IPR013562 tRNA(Met) cytidine acetyltransferase TmcA, N-terminal Reactome: R-HSA-6790901 AM354_RS22085 249328a7560bd092feb3647af2f7f8e3 670 SUPERFAMILY SSF55729 364 515 3.3E-14 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS22085 249328a7560bd092feb3647af2f7f8e3 670 Gene3D G3DSA:3.40.630.30 348 518 6.5E-17 T 29-03-2018 AM354_RS22085 249328a7560bd092feb3647af2f7f8e3 670 Pfam PF05127 Helicase 192 338 1.5E-36 T 29-03-2018 IPR007807 Helicase domain Reactome: R-HSA-6790901 AM354_RS22085 249328a7560bd092feb3647af2f7f8e3 670 Pfam PF17176 tRNA-binding domain 538 657 1.1E-42 T 29-03-2018 IPR033442 tRNA(Met) cytidine acetyltransferase TmcA, tRNA-binding domain KEGG: 00650+2.3.1.19 AM354_RS22085 249328a7560bd092feb3647af2f7f8e3 670 Pfam PF13718 GNAT acetyltransferase 2 370 480 1.8E-14 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS22085 249328a7560bd092feb3647af2f7f8e3 670 Hamap MF_01886 tRNA(Met) cytidine acetyltransferase TmcA [tmcA]. 13 654 49.097 T 29-03-2018 IPR024914 tRNA(Met) cytidine acetyltransferase TmcA GO:0000049|GO:0002101|GO:0051391|GO:0051392 KEGG: 00650+2.3.1.19 AM354_RS22085 249328a7560bd092feb3647af2f7f8e3 670 SUPERFAMILY SSF52540 148 286 7.09E-9 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS22085 249328a7560bd092feb3647af2f7f8e3 670 Gene3D G3DSA:3.40.50.300 156 297 0.0027 T 29-03-2018 AM354_RS20265 a01e2d31195cd9d4edd2f2931579566f 148 Gene3D G3DSA:3.10.450.50 13 148 3.5E-19 T 29-03-2018 AM354_RS20265 a01e2d31195cd9d4edd2f2931579566f 148 SUPERFAMILY SSF54427 28 143 1.99E-21 T 29-03-2018 IPR032710 NTF2-like domain AM354_RS20265 a01e2d31195cd9d4edd2f2931579566f 148 TIGRFAM TIGR02246 TIGR02246: conserved hypothetical protein 29 146 4.0E-12 T 29-03-2018 IPR011944 Steroid delta5-4-isomerase KEGG: 00140+5.3.3.1|KEGG: 00984+5.3.3.1|MetaCyc: PWY-2582|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-699|MetaCyc: PWY-7299 AM354_RS20265 a01e2d31195cd9d4edd2f2931579566f 148 Pfam PF08332 Calcium/calmodulin dependent protein kinase II association domain 32 146 5.6E-13 T 29-03-2018 IPR013543 Calcium/calmodulin-dependent protein kinase II, association-domain GO:0004683|GO:0005516|GO:0006468 Reactome: R-HSA-3371571|Reactome: R-HSA-399719|Reactome: R-HSA-438066|Reactome: R-HSA-442729|Reactome: R-HSA-442742|Reactome: R-HSA-442982|Reactome: R-HSA-5576892|Reactome: R-HSA-5578775|Reactome: R-HSA-5673001|Reactome: R-HSA-877300|Reactome: R-HSA-936837 AM354_RS20265 a01e2d31195cd9d4edd2f2931579566f 148 PIRSF PIRSF028470 6 148 2.6E-51 T 29-03-2018 IPR016887 Uncharacterised conserved protein UCP028470, steroid isomerase-related AM354_RS07025 fb3fb1e6a8e0dd2f34c7e7199cee86c1 386 Gene3D G3DSA:1.10.3720.10 7 386 2.8E-25 T 29-03-2018 AM354_RS07025 fb3fb1e6a8e0dd2f34c7e7199cee86c1 386 SUPERFAMILY SSF161098 177 373 9.42E-32 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS07025 fb3fb1e6a8e0dd2f34c7e7199cee86c1 386 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 197 382 2.2E-17 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS07240 a422022315716e586f8774e168d204b5 272 Gene3D G3DSA:3.40.190.10 26 123 2.6E-24 T 29-03-2018 AM354_RS07240 a422022315716e586f8774e168d204b5 272 SUPERFAMILY SSF53850 26 270 1.18E-69 T 29-03-2018 AM354_RS07240 a422022315716e586f8774e168d204b5 272 Pfam PF03180 NLPA lipoprotein 27 270 2.1E-76 T 29-03-2018 IPR004872 Lipoprotein NlpA family AM354_RS07240 a422022315716e586f8774e168d204b5 272 Gene3D G3DSA:3.40.190.10 124 271 2.1E-41 T 29-03-2018 AM354_RS07240 a422022315716e586f8774e168d204b5 272 PIRSF PIRSF002854 1 272 3.8E-89 T 29-03-2018 IPR004872 Lipoprotein NlpA family AM354_RS12210 3f61d7c470daabe5d3f7092291d494db 221 Pfam PF04405 Domain of Unknown function (DUF542) 5 58 2.0E-20 T 29-03-2018 IPR019903 Repair of iron centres family AM354_RS12210 3f61d7c470daabe5d3f7092291d494db 221 Hamap MF_01606 Iron-sulfur cluster repair protein YtfE [ytfE]. 1 221 49.402 T 29-03-2018 IPR023742 Iron-sulfur cluster repair protein YftE GO:0006950|GO:0030091 AM354_RS12210 3f61d7c470daabe5d3f7092291d494db 221 Pfam PF01814 Hemerythrin HHE cation binding domain 78 217 8.2E-28 T 29-03-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 AM354_RS12210 3f61d7c470daabe5d3f7092291d494db 221 TIGRFAM TIGR03652 FeS_repair_RIC: iron-sulfur cluster repair di-iron protein 8 217 9.2E-79 T 29-03-2018 IPR019903 Repair of iron centres family AM354_RS12210 3f61d7c470daabe5d3f7092291d494db 221 Gene3D G3DSA:1.20.120.520 61 220 1.8E-33 T 29-03-2018 AM354_RS12210 3f61d7c470daabe5d3f7092291d494db 221 Gene3D G3DSA:1.10.3910.10 4 60 2.9E-10 T 29-03-2018 AM354_RS12425 adcff12e5a30f2da8bcd003899d11801 105 Pfam PF00893 Small Multidrug Resistance protein 1 93 4.0E-32 T 29-03-2018 IPR000390 Small multidrug resistance protein family GO:0016021 AM354_RS12425 adcff12e5a30f2da8bcd003899d11801 105 SUPERFAMILY SSF103481 5 104 1.44E-21 T 29-03-2018 AM354_RS22210 6b3deca2cadb0e77e86c9f995d525eb0 118 Gene3D G3DSA:1.10.3290.10 5 118 8.9E-8 T 29-03-2018 IPR003812 Fido domain AM354_RS22210 6b3deca2cadb0e77e86c9f995d525eb0 118 TIGRFAM TIGR01550 DOC_P1: death-on-curing family protein 20 114 1.9E-22 T 29-03-2018 IPR006440 Death on curing protein GO:0016301 AM354_RS22210 6b3deca2cadb0e77e86c9f995d525eb0 118 SUPERFAMILY SSF140931 23 85 1.57E-6 T 29-03-2018 IPR003812 Fido domain AM354_RS22210 6b3deca2cadb0e77e86c9f995d525eb0 118 Pfam PF02661 Fic/DOC family 27 79 4.1E-7 T 29-03-2018 IPR003812 Fido domain AM354_RS10775 833b44a2b67eaa4bc38e776cbe8a30ab 160 Gene3D G3DSA:3.40.430.10 1 160 4.9E-54 T 29-03-2018 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 AM354_RS10775 833b44a2b67eaa4bc38e776cbe8a30ab 160 PRINTS PR00070 Dihydrofolate reductase signature 41 52 1.1E-14 T 29-03-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 AM354_RS10775 833b44a2b67eaa4bc38e776cbe8a30ab 160 PRINTS PR00070 Dihydrofolate reductase signature 14 24 1.1E-14 T 29-03-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 AM354_RS10775 833b44a2b67eaa4bc38e776cbe8a30ab 160 PRINTS PR00070 Dihydrofolate reductase signature 28 36 1.1E-14 T 29-03-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 AM354_RS10775 833b44a2b67eaa4bc38e776cbe8a30ab 160 PRINTS PR00070 Dihydrofolate reductase signature 91 105 1.1E-14 T 29-03-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 AM354_RS10775 833b44a2b67eaa4bc38e776cbe8a30ab 160 PIRSF PIRSF000194 1 160 2.5E-59 T 29-03-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 AM354_RS10775 833b44a2b67eaa4bc38e776cbe8a30ab 160 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 14 36 - T 29-03-2018 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-1474151|Reactome: R-HSA-196757|Reactome: R-HSA-539107 AM354_RS10775 833b44a2b67eaa4bc38e776cbe8a30ab 160 Pfam PF00186 Dihydrofolate reductase 3 159 1.7E-59 T 29-03-2018 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0006545|GO:0009165|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 AM354_RS10775 833b44a2b67eaa4bc38e776cbe8a30ab 160 SUPERFAMILY SSF53597 1 160 2.88E-57 T 29-03-2018 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 AM354_RS22420 6c0af211bdce7fa0f12054da1a35b9d1 427 SUPERFAMILY SSF81296 19 170 1.54E-41 T 29-03-2018 IPR014756 Immunoglobulin E-set AM354_RS22420 6c0af211bdce7fa0f12054da1a35b9d1 427 Pfam PF11806 Domain of unknown function (DUF3327) 45 175 4.9E-44 T 29-03-2018 IPR021764 Enterochelin esterase, N-terminal GO:0005506|GO:0005737|GO:0006826|GO:0008849 AM354_RS22420 6c0af211bdce7fa0f12054da1a35b9d1 427 Pfam PF00756 Putative esterase 198 423 3.9E-34 T 29-03-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 AM354_RS22420 6c0af211bdce7fa0f12054da1a35b9d1 427 Gene3D G3DSA:3.40.50.1820 165 427 1.5E-32 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS22420 6c0af211bdce7fa0f12054da1a35b9d1 427 Gene3D G3DSA:2.60.40.10 17 162 1.2E-42 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS22420 6c0af211bdce7fa0f12054da1a35b9d1 427 SUPERFAMILY SSF53474 185 424 3.6E-47 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS24420 90e5706f6fabb5e69c49d9cfa4e1f310 631 SUPERFAMILY SSF51658 1 268 2.49E-74 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM354_RS24420 90e5706f6fabb5e69c49d9cfa4e1f310 631 Gene3D G3DSA:3.10.180.10 296 441 1.8E-13 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS24420 90e5706f6fabb5e69c49d9cfa4e1f310 631 SUPERFAMILY SSF54593 292 628 5.39E-56 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS24420 90e5706f6fabb5e69c49d9cfa4e1f310 631 Pfam PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal 301 433 2.5E-24 T 29-03-2018 AM354_RS24420 90e5706f6fabb5e69c49d9cfa4e1f310 631 Pfam PF01261 Xylose isomerase-like TIM barrel 18 218 3.6E-36 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM354_RS24420 90e5706f6fabb5e69c49d9cfa4e1f310 631 Gene3D G3DSA:3.10.180.10 443 631 2.9E-34 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS24420 90e5706f6fabb5e69c49d9cfa4e1f310 631 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 449 585 1.5E-4 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AM354_RS24420 90e5706f6fabb5e69c49d9cfa4e1f310 631 Gene3D G3DSA:3.20.20.150 4 295 4.9E-54 T 29-03-2018 AM354_RS08445 445ffaa7e03b2e163df231cb44266f08 175 Gene3D G3DSA:3.40.630.30 11 166 4.0E-19 T 29-03-2018 AM354_RS08445 445ffaa7e03b2e163df231cb44266f08 175 Pfam PF00583 Acetyltransferase (GNAT) family 33 131 3.6E-9 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS08445 445ffaa7e03b2e163df231cb44266f08 175 SUPERFAMILY SSF55729 9 137 2.06E-20 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS09245 e8745f3c2860e2e9490eaf23a33b6cdd 356 Gene3D G3DSA:3.40.1780.10 175 344 1.5E-64 T 29-03-2018 AM354_RS09245 e8745f3c2860e2e9490eaf23a33b6cdd 356 Gene3D G3DSA:3.40.1780.10 1 126 4.6E-30 T 29-03-2018 AM354_RS09245 e8745f3c2860e2e9490eaf23a33b6cdd 356 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1 343 6.5E-159 T 29-03-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 AM354_RS09245 e8745f3c2860e2e9490eaf23a33b6cdd 356 SUPERFAMILY SSF111337 1 343 1.44E-135 T 29-03-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 AM354_RS09245 e8745f3c2860e2e9490eaf23a33b6cdd 356 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 344 46.588 T 29-03-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 AM354_RS09245 e8745f3c2860e2e9490eaf23a33b6cdd 356 Pfam PF02547 Queuosine biosynthesis protein 4 343 2.3E-130 T 29-03-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 AM354_RS16555 ad098b67d39382acd4f788ddc12e745f 176 PIRSF PIRSF002070 2 171 1.5E-40 T 29-03-2018 AM354_RS16555 ad098b67d39382acd4f788ddc12e745f 176 SUPERFAMILY SSF50249 4 176 3.43E-64 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS16555 ad098b67d39382acd4f788ddc12e745f 176 Hamap MF_00984 Single-stranded DNA-binding protein. 6 117 40.502 T 29-03-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 AM354_RS16555 ad098b67d39382acd4f788ddc12e745f 176 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 3 176 8.1E-65 T 29-03-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 AM354_RS16555 ad098b67d39382acd4f788ddc12e745f 176 Gene3D G3DSA:2.40.50.140 1 118 4.4E-47 T 29-03-2018 AM354_RS16555 ad098b67d39382acd4f788ddc12e745f 176 Pfam PF00436 Single-strand binding protein family 6 112 9.4E-44 T 29-03-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 AM354_RS05795 a9bc8e36d47b7f8f4e8fc6e5fff29e51 371 SUPERFAMILY SSF111369 53 299 1.7E-27 T 29-03-2018 AM354_RS05795 a9bc8e36d47b7f8f4e8fc6e5fff29e51 371 Gene3D G3DSA:1.20.1600.10 28 331 5.8E-35 T 29-03-2018 AM354_RS05795 a9bc8e36d47b7f8f4e8fc6e5fff29e51 371 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 38 364 9.5E-59 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AM354_RS05795 a9bc8e36d47b7f8f4e8fc6e5fff29e51 371 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 51 295 8.5E-19 T 29-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AM354_RS07730 9663353e24336f31d04c0538ced97631 224 PIRSF PIRSF006755 1 223 4.2E-86 T 29-03-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 AM354_RS07730 9663353e24336f31d04c0538ced97631 224 Pfam PF13500 AAA domain 5 211 2.9E-41 T 29-03-2018 AM354_RS07730 9663353e24336f31d04c0538ced97631 224 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 2 211 31.426 T 29-03-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 AM354_RS07730 9663353e24336f31d04c0538ced97631 224 Gene3D G3DSA:3.40.50.300 2 215 2.6E-61 T 29-03-2018 AM354_RS07730 9663353e24336f31d04c0538ced97631 224 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 6 176 3.2E-68 T 29-03-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 AM354_RS07730 9663353e24336f31d04c0538ced97631 224 SUPERFAMILY SSF52540 3 217 2.35E-68 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS21385 433fedae771382ca5db45b36ba6059d2 217 SUPERFAMILY SSF53335 3 86 2.44E-5 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS21385 433fedae771382ca5db45b36ba6059d2 217 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 6 12 - T 29-03-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AM354_RS21385 433fedae771382ca5db45b36ba6059d2 217 Pfam PF05063 MT-A70 116 194 5.4E-9 T 29-03-2018 IPR007757 MT-A70-like GO:0006139|GO:0008168 AM354_RS21385 433fedae771382ca5db45b36ba6059d2 217 Pfam PF05063 MT-A70 3 92 2.2E-13 T 29-03-2018 IPR007757 MT-A70-like GO:0006139|GO:0008168 AM354_RS20260 8203f49e26ef64c53023c6f8bdc09c70 712 SUPERFAMILY SSF53383 130 562 1.73E-101 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS20260 8203f49e26ef64c53023c6f8bdc09c70 712 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 570 699 3.6E-45 T 29-03-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 AM354_RS20260 8203f49e26ef64c53023c6f8bdc09c70 712 SUPERFAMILY SSF55904 567 707 5.62E-42 T 29-03-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 AM354_RS20260 8203f49e26ef64c53023c6f8bdc09c70 712 Gene3D G3DSA:3.40.640.10 130 423 1.9E-29 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS20260 8203f49e26ef64c53023c6f8bdc09c70 712 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 362 376 - T 29-03-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 AM354_RS20260 8203f49e26ef64c53023c6f8bdc09c70 712 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 14 124 2.3E-28 T 29-03-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 AM354_RS20260 8203f49e26ef64c53023c6f8bdc09c70 712 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 130 545 1.2E-186 T 29-03-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 AM354_RS20260 8203f49e26ef64c53023c6f8bdc09c70 712 Gene3D G3DSA:3.90.1150.10 425 594 3.5E-55 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS20260 8203f49e26ef64c53023c6f8bdc09c70 712 PIRSF PIRSF009393 1 712 6.4E-275 T 29-03-2018 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 AM354_RS20260 8203f49e26ef64c53023c6f8bdc09c70 712 Gene3D G3DSA:3.90.100.10 595 712 9.3E-37 T 29-03-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 AM354_RS19285 57bf7298c03bd38f8fb0c45f40fb5642 312 Gene3D G3DSA:3.40.190.10 93 177 7.8E-10 T 29-03-2018 AM354_RS19285 57bf7298c03bd38f8fb0c45f40fb5642 312 SUPERFAMILY SSF46785 7 90 7.79E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS19285 57bf7298c03bd38f8fb0c45f40fb5642 312 SUPERFAMILY SSF53850 93 299 3.8E-43 T 29-03-2018 AM354_RS19285 57bf7298c03bd38f8fb0c45f40fb5642 312 Gene3D G3DSA:3.40.190.10 178 267 2.7E-26 T 29-03-2018 AM354_RS19285 57bf7298c03bd38f8fb0c45f40fb5642 312 Pfam PF03466 LysR substrate binding domain 91 295 2.9E-39 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS19285 57bf7298c03bd38f8fb0c45f40fb5642 312 Gene3D G3DSA:1.10.10.10 6 90 4.2E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS19285 57bf7298c03bd38f8fb0c45f40fb5642 312 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 9.9E-17 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS04625 f573c3ad370d5f1871722a844c9d1996 317 TIGRFAM TIGR01249 pro_imino_pep_1: prolyl aminopeptidase 13 314 1.9E-126 T 29-03-2018 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 AM354_RS04625 f573c3ad370d5f1871722a844c9d1996 317 SUPERFAMILY SSF53474 7 313 1.5E-60 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS04625 f573c3ad370d5f1871722a844c9d1996 317 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 40 48 8.5E-14 T 29-03-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 AM354_RS04625 f573c3ad370d5f1871722a844c9d1996 317 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 66 77 8.5E-14 T 29-03-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 AM354_RS04625 f573c3ad370d5f1871722a844c9d1996 317 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 109 123 8.5E-14 T 29-03-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 AM354_RS04625 f573c3ad370d5f1871722a844c9d1996 317 Pfam PF00561 alpha/beta hydrolase fold 41 296 5.3E-32 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS04625 f573c3ad370d5f1871722a844c9d1996 317 Gene3D G3DSA:3.40.50.1820 1 315 2.5E-70 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS04625 f573c3ad370d5f1871722a844c9d1996 317 PIRSF PIRSF006431 2 317 1.0E-142 T 29-03-2018 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 AM354_RS04625 f573c3ad370d5f1871722a844c9d1996 317 PRINTS PR00111 Alpha/beta hydrolase fold signature 63 78 1.8E-6 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS04625 f573c3ad370d5f1871722a844c9d1996 317 PRINTS PR00111 Alpha/beta hydrolase fold signature 123 136 1.8E-6 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS04625 f573c3ad370d5f1871722a844c9d1996 317 PRINTS PR00111 Alpha/beta hydrolase fold signature 109 122 1.8E-6 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS01880 390deb475e1cf9789f57a2e8b173f05a 467 Gene3D G3DSA:3.30.9.10 327 437 0.0023 T 29-03-2018 AM354_RS01880 390deb475e1cf9789f57a2e8b173f05a 467 Pfam PF04324 BFD-like [2Fe-2S] binding domain 399 451 4.1E-7 T 29-03-2018 IPR007419 BFD-like [2Fe-2S]-binding domain AM354_RS01880 390deb475e1cf9789f57a2e8b173f05a 467 SUPERFAMILY SSF51905 8 318 7.77E-37 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS01880 390deb475e1cf9789f57a2e8b173f05a 467 Gene3D G3DSA:3.30.9.10 165 319 6.7E-29 T 29-03-2018 AM354_RS01880 390deb475e1cf9789f57a2e8b173f05a 467 Pfam PF01266 FAD dependent oxidoreductase 9 357 5.0E-51 T 29-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AM354_RS01880 390deb475e1cf9789f57a2e8b173f05a 467 Gene3D G3DSA:3.50.50.60 2 65 4.0E-5 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS01880 390deb475e1cf9789f57a2e8b173f05a 467 Gene3D G3DSA:3.30.9.10 91 164 8.2E-9 T 29-03-2018 AM354_RS18970 38e94da4f034354be199e61d9f49a704 120 Pfam PF06062 Uncharacterised protein family (UPF0231) 1 117 2.8E-44 T 29-03-2018 IPR008249 Uncharacterised protein family UPF0231 AM354_RS18970 38e94da4f034354be199e61d9f49a704 120 PIRSF PIRSF006287 1 120 1.1E-48 T 29-03-2018 IPR008249 Uncharacterised protein family UPF0231 AM354_RS18970 38e94da4f034354be199e61d9f49a704 120 Hamap MF_01053 UPF0231 protein YacL [yacL]. 1 119 29.706 T 29-03-2018 IPR008249 Uncharacterised protein family UPF0231 AM354_RS18970 38e94da4f034354be199e61d9f49a704 120 ProDom PD020773 UPF0231 YACL UNCHARACTERISED UCP006287 VC0605 UNCHARACTERIZED 3'REGION VV2750 BCR OXIDASE 1 117 4.0E-49 T 29-03-2018 IPR008249 Uncharacterised protein family UPF0231 AM354_RS12045 83fe610d3898a74cfe241ef2ad90e7c7 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 5 156 1.4E-60 T 29-03-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 AM354_RS12045 83fe610d3898a74cfe241ef2ad90e7c7 158 PIRSF PIRSF006092 1 158 1.9E-55 T 29-03-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 AM354_RS12045 83fe610d3898a74cfe241ef2ad90e7c7 158 Pfam PF03449 Transcription elongation factor, N-terminal 4 74 3.4E-32 T 29-03-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 AM354_RS12045 83fe610d3898a74cfe241ef2ad90e7c7 158 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 121 137 - T 29-03-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 AM354_RS12045 83fe610d3898a74cfe241ef2ad90e7c7 158 SUPERFAMILY SSF54534 82 157 1.05E-24 T 29-03-2018 AM354_RS12045 83fe610d3898a74cfe241ef2ad90e7c7 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 156 33.841 T 29-03-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 AM354_RS12045 83fe610d3898a74cfe241ef2ad90e7c7 158 SUPERFAMILY SSF46557 3 78 3.79E-29 T 29-03-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 AM354_RS12045 83fe610d3898a74cfe241ef2ad90e7c7 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 83 157 4.4E-29 T 29-03-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 AM354_RS12045 83fe610d3898a74cfe241ef2ad90e7c7 158 Gene3D G3DSA:3.10.50.30 76 158 1.5E-27 T 29-03-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 AM354_RS12045 83fe610d3898a74cfe241ef2ad90e7c7 158 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 29-03-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 AM354_RS12045 83fe610d3898a74cfe241ef2ad90e7c7 158 Gene3D G3DSA:1.10.287.180 3 75 2.1E-33 T 29-03-2018 AM354_RS11675 e74f90cc7a94724aae6f2a6754d73484 356 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 4 354 4.7E-142 T 29-03-2018 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 AM354_RS11675 e74f90cc7a94724aae6f2a6754d73484 356 Pfam PF03739 Predicted permease YjgP/YjgQ family 7 354 3.2E-74 T 29-03-2018 IPR005495 Permease LptG/LptF-related GO:0016021 AM354_RS08435 a94fe9c6db43c0805c961fe73d210370 441 Pfam PF00296 Luciferase-like monooxygenase 24 383 1.2E-63 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AM354_RS08435 a94fe9c6db43c0805c961fe73d210370 441 PIRSF PIRSF000337 6 441 5.9E-146 T 29-03-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 AM354_RS08435 a94fe9c6db43c0805c961fe73d210370 441 SUPERFAMILY SSF51679 8 435 8.24E-132 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AM354_RS08435 a94fe9c6db43c0805c961fe73d210370 441 Gene3D G3DSA:3.20.20.30 2 441 6.4E-103 T 29-03-2018 AM354_RS08435 a94fe9c6db43c0805c961fe73d210370 441 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 13 429 1.7E-164 T 29-03-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 AM354_RS24875 8654252c804a7ee30f2a8f2429658179 305 Pfam PF01062 Bestrophin, RFP-TM, chloride channel 2 283 1.8E-58 T 29-03-2018 IPR021134 Bestrophin/UPF0187 Reactome: R-HSA-2672351 AM354_RS07465 06687f214f859d03a1bfd1853de55e9f 507 Gene3D G3DSA:1.20.990.10 166 240 3.9E-7 T 29-03-2018 AM354_RS07465 06687f214f859d03a1bfd1853de55e9f 507 Gene3D G3DSA:3.40.50.360 5 162 6.9E-30 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS07465 06687f214f859d03a1bfd1853de55e9f 507 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 201 211 3.3E-16 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM354_RS07465 06687f214f859d03a1bfd1853de55e9f 507 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 373 392 3.3E-16 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM354_RS07465 06687f214f859d03a1bfd1853de55e9f 507 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 411 422 3.3E-16 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM354_RS07465 06687f214f859d03a1bfd1853de55e9f 507 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 465 473 3.3E-16 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM354_RS07465 06687f214f859d03a1bfd1853de55e9f 507 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 339 348 3.3E-16 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM354_RS07465 06687f214f859d03a1bfd1853de55e9f 507 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 398 407 3.3E-16 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM354_RS07465 06687f214f859d03a1bfd1853de55e9f 507 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 308 315 3.3E-16 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM354_RS07465 06687f214f859d03a1bfd1853de55e9f 507 PRINTS PR00369 Flavodoxin signature 9 22 8.8E-13 T 29-03-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 AM354_RS07465 06687f214f859d03a1bfd1853de55e9f 507 PRINTS PR00369 Flavodoxin signature 111 130 8.8E-13 T 29-03-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 AM354_RS07465 06687f214f859d03a1bfd1853de55e9f 507 PRINTS PR00369 Flavodoxin signature 57 68 8.8E-13 T 29-03-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 AM354_RS07465 06687f214f859d03a1bfd1853de55e9f 507 PRINTS PR00369 Flavodoxin signature 87 97 8.8E-13 T 29-03-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 AM354_RS07465 06687f214f859d03a1bfd1853de55e9f 507 SUPERFAMILY SSF63380 161 360 6.49E-35 T 29-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AM354_RS07465 06687f214f859d03a1bfd1853de55e9f 507 SUPERFAMILY SSF52343 361 507 5.24E-37 T 29-03-2018 AM354_RS07465 06687f214f859d03a1bfd1853de55e9f 507 Pfam PF00258 Flavodoxin 10 133 1.2E-23 T 29-03-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 AM354_RS07465 06687f214f859d03a1bfd1853de55e9f 507 Gene3D G3DSA:3.40.50.80 369 506 4.3E-26 T 29-03-2018 AM354_RS07465 06687f214f859d03a1bfd1853de55e9f 507 SUPERFAMILY SSF52218 7 147 6.29E-37 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS07465 06687f214f859d03a1bfd1853de55e9f 507 Gene3D G3DSA:2.40.30.10 262 368 1.0E-18 T 29-03-2018 AM354_RS07465 06687f214f859d03a1bfd1853de55e9f 507 Pfam PF00175 Oxidoreductase NAD-binding domain 374 477 2.7E-14 T 29-03-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AM354_RS15610 67fe427cd89686e65b66cbca92536eb0 157 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 154 28.463 T 29-03-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 AM354_RS15610 67fe427cd89686e65b66cbca92536eb0 157 SUPERFAMILY SSF54534 80 155 6.54E-20 T 29-03-2018 AM354_RS15610 67fe427cd89686e65b66cbca92536eb0 157 Gene3D G3DSA:1.10.287.180 3 75 6.9E-30 T 29-03-2018 AM354_RS15610 67fe427cd89686e65b66cbca92536eb0 157 SUPERFAMILY SSF46557 4 78 4.19E-28 T 29-03-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 AM354_RS15610 67fe427cd89686e65b66cbca92536eb0 157 PIRSF PIRSF006092 1 157 1.9E-46 T 29-03-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 AM354_RS15610 67fe427cd89686e65b66cbca92536eb0 157 TIGRFAM TIGR01461 greB: transcription elongation factor GreB 3 157 1.0E-83 T 29-03-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 AM354_RS15610 67fe427cd89686e65b66cbca92536eb0 157 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 29-03-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 AM354_RS15610 67fe427cd89686e65b66cbca92536eb0 157 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 81 155 8.0E-23 T 29-03-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 AM354_RS15610 67fe427cd89686e65b66cbca92536eb0 157 Pfam PF03449 Transcription elongation factor, N-terminal 5 74 5.9E-27 T 29-03-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 AM354_RS15610 67fe427cd89686e65b66cbca92536eb0 157 Hamap MF_00930 Transcription elongation factor GreB [greB]. 1 156 54.171 T 29-03-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 AM354_RS15610 67fe427cd89686e65b66cbca92536eb0 157 Gene3D G3DSA:3.10.50.30 76 157 2.5E-22 T 29-03-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 AM354_RS00155 7776abdf637022956722f491f445501a 373 SMART SM00474 3 171 3.4E-44 T 29-03-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AM354_RS00155 7776abdf637022956722f491f445501a 373 SUPERFAMILY SSF47819 195 300 1.29E-29 T 29-03-2018 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 AM354_RS00155 7776abdf637022956722f491f445501a 373 SUPERFAMILY SSF53098 2 210 6.96E-62 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS00155 7776abdf637022956722f491f445501a 373 Gene3D G3DSA:3.30.420.10 1 194 1.2E-37 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS00155 7776abdf637022956722f491f445501a 373 Gene3D G3DSA:1.10.150.80 195 293 8.5E-23 T 29-03-2018 AM354_RS00155 7776abdf637022956722f491f445501a 373 Hamap MF_01899 Ribonuclease D [rnd]. 3 371 45.89 T 29-03-2018 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 AM354_RS00155 7776abdf637022956722f491f445501a 373 Pfam PF00570 HRDC domain 213 279 1.3E-15 T 29-03-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 AM354_RS00155 7776abdf637022956722f491f445501a 373 TIGRFAM TIGR01388 rnd: ribonuclease D 5 369 9.6E-145 T 29-03-2018 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 AM354_RS00155 7776abdf637022956722f491f445501a 373 Pfam PF01612 3'-5' exonuclease 3 170 6.9E-37 T 29-03-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AM354_RS00155 7776abdf637022956722f491f445501a 373 SUPERFAMILY SSF47819 296 372 1.96E-22 T 29-03-2018 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 AM354_RS00155 7776abdf637022956722f491f445501a 373 SMART SM00341 210 289 6.0E-19 T 29-03-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 AM354_RS03625 e74c6370991c5baee41cdceefa6c1116 79 Pfam PF07351 Protein of unknown function (DUF1480) 1 78 9.9E-43 T 29-03-2018 IPR009950 Protein of unknown function DUF1480 AM354_RS03625 e74c6370991c5baee41cdceefa6c1116 79 ProDom PD060427 YEBV CYTOPLASMIC Y1856 ESCHERICHIA ECS2546 YPO1694 COLI STY1982 SIMILAR 3 78 3.0E-27 T 29-03-2018 IPR009950 Protein of unknown function DUF1480 AM354_RS19195 81fbe456e3a042a8b59198ff7a547783 174 Gene3D G3DSA:2.60.120.10 19 173 9.1E-17 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS19195 81fbe456e3a042a8b59198ff7a547783 174 Pfam PF07883 Cupin domain 81 148 1.1E-11 T 29-03-2018 IPR013096 Cupin 2, conserved barrel AM354_RS19195 81fbe456e3a042a8b59198ff7a547783 174 SUPERFAMILY SSF51182 28 168 1.82E-22 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS14800 a2c8fca2d9bf6a7211d07c5ccdfaccad 296 Gene3D G3DSA:3.40.190.10 176 267 1.4E-10 T 29-03-2018 AM354_RS14800 a2c8fca2d9bf6a7211d07c5ccdfaccad 296 Gene3D G3DSA:1.10.10.10 1 83 1.0E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS14800 a2c8fca2d9bf6a7211d07c5ccdfaccad 296 Gene3D G3DSA:3.40.190.10 87 175 3.8E-19 T 29-03-2018 AM354_RS14800 a2c8fca2d9bf6a7211d07c5ccdfaccad 296 SUPERFAMILY SSF53850 89 294 6.3E-34 T 29-03-2018 AM354_RS14800 a2c8fca2d9bf6a7211d07c5ccdfaccad 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 4.3E-21 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS14800 a2c8fca2d9bf6a7211d07c5ccdfaccad 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.9E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS14800 a2c8fca2d9bf6a7211d07c5ccdfaccad 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.9E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS14800 a2c8fca2d9bf6a7211d07c5ccdfaccad 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.9E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS14800 a2c8fca2d9bf6a7211d07c5ccdfaccad 296 Pfam PF03466 LysR substrate binding domain 89 294 3.5E-38 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS14800 a2c8fca2d9bf6a7211d07c5ccdfaccad 296 SUPERFAMILY SSF46785 1 111 6.96E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS04325 334c8061067fd08ca64aba56f5e88a41 269 Pfam PF13371 Tetratricopeptide repeat 187 258 1.3E-22 T 29-03-2018 AM354_RS04325 334c8061067fd08ca64aba56f5e88a41 269 Gene3D G3DSA:1.25.40.10 40 265 6.3E-4 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS04325 334c8061067fd08ca64aba56f5e88a41 269 Pfam PF13369 Transglutaminase-like superfamily 33 184 3.5E-41 T 29-03-2018 IPR032698 Protein SirB1, N-terminal Reactome: R-HSA-8951664|Reactome: R-HSA-983168 AM354_RS09925 b2c6f81599358e637e307f2c62c019b5 292 SUPERFAMILY SSF63380 6 129 3.94E-10 T 29-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AM354_RS09925 b2c6f81599358e637e307f2c62c019b5 292 Pfam PF04954 Siderophore-interacting protein 145 291 3.5E-31 T 29-03-2018 IPR007037 Siderophore-interacting protein AM354_RS09925 b2c6f81599358e637e307f2c62c019b5 292 Pfam PF08021 Siderophore-interacting FAD-binding domain 13 128 5.4E-38 T 29-03-2018 IPR013113 FAD-binding 9, siderophore-interacting AM354_RS09925 b2c6f81599358e637e307f2c62c019b5 292 Gene3D G3DSA:3.40.50.80 138 292 2.7E-34 T 29-03-2018 AM354_RS09925 b2c6f81599358e637e307f2c62c019b5 292 Gene3D G3DSA:2.40.30.10 1 128 7.3E-30 T 29-03-2018 AM354_RS23475 273eed149ae2857cf39264f1f9482d8b 583 Gene3D G3DSA:3.30.565.10 423 581 5.2E-23 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS23475 273eed149ae2857cf39264f1f9482d8b 583 SUPERFAMILY SSF53850 32 251 3.38E-13 T 29-03-2018 AM354_RS23475 273eed149ae2857cf39264f1f9482d8b 583 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 22 273 3.8E-34 T 29-03-2018 AM354_RS23475 273eed149ae2857cf39264f1f9482d8b 583 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 469 569 8.8E-13 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS23475 273eed149ae2857cf39264f1f9482d8b 583 Gene3D G3DSA:1.10.287.130 330 413 6.8E-8 T 29-03-2018 AM354_RS23475 273eed149ae2857cf39264f1f9482d8b 583 SMART SM00388 349 418 6.0E-5 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS23475 273eed149ae2857cf39264f1f9482d8b 583 SMART SM00387 464 572 4.7E-17 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS23475 273eed149ae2857cf39264f1f9482d8b 583 SUPERFAMILY SSF55874 424 567 3.8E-23 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS23475 273eed149ae2857cf39264f1f9482d8b 583 Gene3D G3DSA:3.40.190.10 115 278 6.0E-16 T 29-03-2018 AM354_RS23475 273eed149ae2857cf39264f1f9482d8b 583 PRINTS PR00344 Bacterial sensor protein C-terminal signature 517 527 9.5E-6 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS23475 273eed149ae2857cf39264f1f9482d8b 583 PRINTS PR00344 Bacterial sensor protein C-terminal signature 499 513 9.5E-6 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS23475 273eed149ae2857cf39264f1f9482d8b 583 PRINTS PR00344 Bacterial sensor protein C-terminal signature 528 546 9.5E-6 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS23475 273eed149ae2857cf39264f1f9482d8b 583 SUPERFAMILY SSF47384 341 414 1.75E-8 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS23110 9302acea2d4888c32d3103447641d41d 199 SUPERFAMILY SSF109604 3 185 4.71E-46 T 29-03-2018 AM354_RS23110 9302acea2d4888c32d3103447641d41d 199 ProDom PD353566 UPF0207 HYDROLASE HD PHOSPHOHYDROLASE METAL-DEPENDENT SUBDOMAIN YFBR PHOSPHOHYDROLASE NUCLEOTIDE-BINDING NUCLEOSIDE 80 176 1.0E-40 T 29-03-2018 AM354_RS23110 9302acea2d4888c32d3103447641d41d 199 Gene3D G3DSA:1.10.3210.10 1 199 1.1E-53 T 29-03-2018 AM354_RS23110 9302acea2d4888c32d3103447641d41d 199 SMART SM00471 26 151 1.8E-7 T 29-03-2018 IPR003607 HD/PDEase domain AM354_RS23110 9302acea2d4888c32d3103447641d41d 199 Hamap MF_01100 5'-deoxynucleotidase YfbR [yfbR]. 3 195 45.926 T 29-03-2018 IPR022971 5'-deoxynucleotidase YfbR KEGG: 00240+3.1.3.89 AM354_RS23110 9302acea2d4888c32d3103447641d41d 199 Pfam PF13023 HD domain 11 161 5.3E-18 T 29-03-2018 IPR006674 HD domain AM354_RS08680 5231ef5ce25387dddd5ce582dfd52393 301 Pfam PF01145 SPFH domain / Band 7 family 22 200 4.4E-32 T 29-03-2018 IPR001107 Band 7 domain AM354_RS08680 5231ef5ce25387dddd5ce582dfd52393 301 ProSitePatterns PS01270 Band 7 protein family signature. 132 160 - T 29-03-2018 IPR018080 Band 7/stomatin-like, conserved site AM354_RS08680 5231ef5ce25387dddd5ce582dfd52393 301 SUPERFAMILY SSF117892 49 183 1.44E-40 T 29-03-2018 IPR001107 Band 7 domain AM354_RS08680 5231ef5ce25387dddd5ce582dfd52393 301 SMART SM00244 18 176 2.1E-58 T 29-03-2018 IPR001107 Band 7 domain AM354_RS08680 5231ef5ce25387dddd5ce582dfd52393 301 PRINTS PR00721 Stomatin signature 128 151 4.5E-27 T 29-03-2018 IPR001972 Stomatin family GO:0016020 AM354_RS08680 5231ef5ce25387dddd5ce582dfd52393 301 PRINTS PR00721 Stomatin signature 108 125 4.5E-27 T 29-03-2018 IPR001972 Stomatin family GO:0016020 AM354_RS08680 5231ef5ce25387dddd5ce582dfd52393 301 PRINTS PR00721 Stomatin signature 152 170 4.5E-27 T 29-03-2018 IPR001972 Stomatin family GO:0016020 AM354_RS08680 5231ef5ce25387dddd5ce582dfd52393 301 PRINTS PR00721 Stomatin signature 73 94 4.5E-27 T 29-03-2018 IPR001972 Stomatin family GO:0016020 AM354_RS08680 5231ef5ce25387dddd5ce582dfd52393 301 PRINTS PR00721 Stomatin signature 171 192 4.5E-27 T 29-03-2018 IPR001972 Stomatin family GO:0016020 AM354_RS09040 166b08f5ad76329ea98ce8c9590184d0 274 Gene3D G3DSA:3.40.50.1000 1 267 5.9E-34 T 29-03-2018 IPR023214 HAD-like domain AM354_RS09040 166b08f5ad76329ea98ce8c9590184d0 274 Hamap MF_01847 HMP-PP phosphatase [cof]. 1 274 65.423 T 29-03-2018 IPR023938 HMP-PP phosphatase GO:0016818 AM354_RS09040 166b08f5ad76329ea98ce8c9590184d0 274 SUPERFAMILY SSF56784 1 263 9.26E-64 T 29-03-2018 IPR023214 HAD-like domain AM354_RS09040 166b08f5ad76329ea98ce8c9590184d0 274 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 259 7.0E-52 T 29-03-2018 IPR023214 HAD-like domain AM354_RS09040 166b08f5ad76329ea98ce8c9590184d0 274 ProSitePatterns PS01229 Hypothetical cof family signature 2. 211 233 - T 29-03-2018 AM354_RS09040 166b08f5ad76329ea98ce8c9590184d0 274 ProSitePatterns PS01228 Hypothetical cof family signature 1. 4 15 - T 29-03-2018 AM354_RS09040 166b08f5ad76329ea98ce8c9590184d0 274 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 259 9.2E-56 T 29-03-2018 IPR000150 Cof family GO:0016787 AM354_RS09040 166b08f5ad76329ea98ce8c9590184d0 274 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 230 2.2E-41 T 29-03-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 AM354_RS06100 2c1909e63b19b320fe75cb901fc36913 409 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 74 85 1.2E-17 T 29-03-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AM354_RS06100 2c1909e63b19b320fe75cb901fc36913 409 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 160 173 1.2E-17 T 29-03-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AM354_RS06100 2c1909e63b19b320fe75cb901fc36913 409 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 133 150 1.2E-17 T 29-03-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AM354_RS06100 2c1909e63b19b320fe75cb901fc36913 409 SMART SM00936 294 385 8.5E-36 T 29-03-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM354_RS06100 2c1909e63b19b320fe75cb901fc36913 409 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 42 274 8.4E-97 T 29-03-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 AM354_RS06100 2c1909e63b19b320fe75cb901fc36913 409 Gene3D G3DSA:2.60.410.10 312 385 2.3E-19 T 29-03-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM354_RS06100 2c1909e63b19b320fe75cb901fc36913 409 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 294 385 1.2E-25 T 29-03-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM354_RS06100 2c1909e63b19b320fe75cb901fc36913 409 SUPERFAMILY SSF56601 19 294 6.43E-81 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM354_RS06100 2c1909e63b19b320fe75cb901fc36913 409 SUPERFAMILY SSF69189 294 387 3.92E-26 T 29-03-2018 IPR015956 Penicillin-binding protein-associated GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM354_RS06100 2c1909e63b19b320fe75cb901fc36913 409 Gene3D G3DSA:3.40.710.10 30 311 6.3E-50 T 29-03-2018 AM354_RS23145 66474f6e97d1f48b6ad5d132e3c32ecb 448 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 55 227 1.8E-50 T 29-03-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23145 66474f6e97d1f48b6ad5d132e3c32ecb 448 SUPERFAMILY SSF140490 335 424 1.01E-30 T 29-03-2018 AM354_RS23145 66474f6e97d1f48b6ad5d132e3c32ecb 448 SMART SM00928 337 382 2.7E-21 T 29-03-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23145 66474f6e97d1f48b6ad5d132e3c32ecb 448 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 14 424 4.4E-201 T 29-03-2018 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23145 66474f6e97d1f48b6ad5d132e3c32ecb 448 SUPERFAMILY SSF142019 17 247 1.57E-85 T 29-03-2018 AM354_RS23145 66474f6e97d1f48b6ad5d132e3c32ecb 448 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 340 422 1.3E-26 T 29-03-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23145 66474f6e97d1f48b6ad5d132e3c32ecb 448 Pfam PF10531 SLBB domain 254 296 2.2E-7 T 29-03-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23145 66474f6e97d1f48b6ad5d132e3c32ecb 448 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 350 361 - T 29-03-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23145 66474f6e97d1f48b6ad5d132e3c32ecb 448 SUPERFAMILY SSF142984 249 331 3.66E-20 T 29-03-2018 AM354_RS23145 66474f6e97d1f48b6ad5d132e3c32ecb 448 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 175 190 - T 29-03-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS24645 2eba711c2a41479fb7ae6b53f80d6f8b 465 Pfam PF00324 Amino acid permease 26 429 7.5E-84 T 29-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 AM354_RS24645 2eba711c2a41479fb7ae6b53f80d6f8b 465 PIRSF PIRSF006060 4 463 7.1E-67 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM354_RS24645 2eba711c2a41479fb7ae6b53f80d6f8b 465 ProSitePatterns PS00218 Amino acid permeases signature. 50 80 - T 29-03-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 AM354_RS25550 2a99aaa4f80a6fed9f39655ce9078951 432 SUPERFAMILY SSF54909 64 424 3.4E-99 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel AM354_RS25550 2a99aaa4f80a6fed9f39655ce9078951 432 TIGRFAM TIGR01412 tat_substr_1: Tat-translocated enzyme 16 430 7.2E-174 T 29-03-2018 IPR006313 Deferrochelatase/peroxidase EfeB GO:0004601|GO:0015684|GO:0020037|GO:0033212 AM354_RS25550 2a99aaa4f80a6fed9f39655ce9078951 432 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 71 419 6.5E-102 T 29-03-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 AM354_RS25550 2a99aaa4f80a6fed9f39655ce9078951 432 Pfam PF04261 Dyp-type peroxidase family 71 419 2.0E-116 T 29-03-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 AM354_RS20790 1f9f8a11043a74ef4a6f2908c9f175ad 593 Pfam PF06056 Putative ATPase subunit of terminase (gpP-like) 11 64 6.7E-15 T 29-03-2018 IPR010332 ATPase terminase subunit, putative GO:0005524|GO:0019069 AM354_RS20790 1f9f8a11043a74ef4a6f2908c9f175ad 593 Pfam PF17289 Terminase RNaseH-like domain 416 574 6.0E-30 T 29-03-2018 IPR035421 Terminase, large subunit gp17-like AM354_RS20790 1f9f8a11043a74ef4a6f2908c9f175ad 593 Pfam PF03237 Terminase-like family 167 388 4.6E-52 T 29-03-2018 AM354_RS09340 d4e2e314b8898c6ef110c8e61cf248d9 304 Gene3D G3DSA:3.30.420.40 1 115 2.9E-21 T 29-03-2018 AM354_RS09340 d4e2e314b8898c6ef110c8e61cf248d9 304 ProSitePatterns PS01125 ROK family signature. 130 157 - T 29-03-2018 IPR000600 ROK family Reactome: R-HSA-4085001 AM354_RS09340 d4e2e314b8898c6ef110c8e61cf248d9 304 SUPERFAMILY SSF53067 2 301 4.63E-62 T 29-03-2018 AM354_RS09340 d4e2e314b8898c6ef110c8e61cf248d9 304 Gene3D G3DSA:3.30.420.40 116 304 5.7E-52 T 29-03-2018 AM354_RS09340 d4e2e314b8898c6ef110c8e61cf248d9 304 Pfam PF00480 ROK family 3 301 8.4E-87 T 29-03-2018 IPR000600 ROK family Reactome: R-HSA-4085001 AM354_RS02075 a95c7e3d2afefde92588387d08e632df 340 SUPERFAMILY SSF47413 5 64 5.06E-16 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS02075 a95c7e3d2afefde92588387d08e632df 340 SMART SM00354 6 76 7.1E-22 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS02075 a95c7e3d2afefde92588387d08e632df 340 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 65 267 5.0E-22 T 29-03-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain AM354_RS02075 a95c7e3d2afefde92588387d08e632df 340 SUPERFAMILY SSF53822 63 313 1.91E-45 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS02075 a95c7e3d2afefde92588387d08e632df 340 Pfam PF00356 Bacterial regulatory proteins, lacI family 10 53 5.8E-13 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS02075 a95c7e3d2afefde92588387d08e632df 340 Gene3D G3DSA:1.10.260.40 5 57 1.7E-19 T 29-03-2018 AM354_RS02075 a95c7e3d2afefde92588387d08e632df 340 Gene3D G3DSA:3.40.50.2300 180 312 1.2E-30 T 29-03-2018 AM354_RS02075 a95c7e3d2afefde92588387d08e632df 340 Gene3D G3DSA:3.40.50.2300 58 179 1.3E-23 T 29-03-2018 AM354_RS11220 bced4cccaf8b7f887f64876011470556 171 SUPERFAMILY SSF50475 10 163 8.83E-47 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 AM354_RS11220 bced4cccaf8b7f887f64876011470556 171 Gene3D G3DSA:2.30.110.10 5 163 1.2E-34 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 AM354_RS11220 bced4cccaf8b7f887f64876011470556 171 Pfam PF01613 Flavin reductase like domain 15 163 2.2E-26 T 29-03-2018 IPR002563 Flavin reductase like domain GO:0010181 AM354_RS11220 bced4cccaf8b7f887f64876011470556 171 TIGRFAM TIGR02296 HpaC: 4-hydroxyphenylacetate 3-monooxygenase, reductase component 11 163 6.0E-76 T 29-03-2018 IPR011982 4-hydroxyphenylacetate 3-monooxygenase, reductase component GO:0016651|GO:0042537|GO:0051287|GO:0055114 KEGG: 00740+1.5.1.36 AM354_RS11220 bced4cccaf8b7f887f64876011470556 171 SMART SM00903 15 162 5.8E-50 T 29-03-2018 IPR002563 Flavin reductase like domain GO:0010181 AM354_RS08620 f43ec2fa382a26002fbd227c72ed0cf6 349 SUPERFAMILY SSF89733 1 334 4.32E-111 T 29-03-2018 IPR003767 Malate/L-lactate dehydrogenase-like GO:0008152|GO:0016491|GO:0055114 AM354_RS08620 f43ec2fa382a26002fbd227c72ed0cf6 349 Gene3D G3DSA:1.10.1530.10 2 79 1.1E-26 T 29-03-2018 AM354_RS08620 f43ec2fa382a26002fbd227c72ed0cf6 349 Gene3D G3DSA:3.30.1370.60 80 305 3.6E-83 T 29-03-2018 AM354_RS08620 f43ec2fa382a26002fbd227c72ed0cf6 349 Pfam PF02615 Malate/L-lactate dehydrogenase 3 331 1.1E-115 T 29-03-2018 IPR003767 Malate/L-lactate dehydrogenase-like GO:0008152|GO:0016491|GO:0055114 AM354_RS08620 f43ec2fa382a26002fbd227c72ed0cf6 349 TIGRFAM TIGR03175 AllD: ureidoglycolate dehydrogenase 1 348 6.7E-186 T 29-03-2018 IPR017590 Ureidoglycolate dehydrogenase KEGG: 00062+1.1.1.35|KEGG: 00071+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00230+1.1.1.350|KEGG: 00280+1.1.1.35|KEGG: 00281+1.1.1.35|KEGG: 00310+1.1.1.35|KEGG: 00362+1.1.1.35|KEGG: 00380+1.1.1.35|KEGG: 00623+1.1.1.35|KEGG: 00650+1.1.1.35|KEGG: 00720+1.1.1.35|KEGG: 00930+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5136|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM354_RS11815 7ad474af3405e64a825f47a434099cfa 241 SMART SM00866 96 236 3.6E-27 T 29-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AM354_RS11815 7ad474af3405e64a825f47a434099cfa 241 SMART SM00345 17 75 3.3E-21 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS11815 7ad474af3405e64a825f47a434099cfa 241 SUPERFAMILY SSF46785 11 79 8.02E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS11815 7ad474af3405e64a825f47a434099cfa 241 SUPERFAMILY SSF64288 63 240 4.71E-37 T 29-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AM354_RS11815 7ad474af3405e64a825f47a434099cfa 241 TIGRFAM TIGR02325 C_P_lyase_phnF: phosphonate metabolism transcriptional regulator PhnF 6 241 5.5E-85 T 29-03-2018 IPR012702 Phosphonate C-P lyase system, transcriptional regulator PhnF AM354_RS11815 7ad474af3405e64a825f47a434099cfa 241 Gene3D G3DSA:3.40.1410.10 83 241 2.3E-32 T 29-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AM354_RS11815 7ad474af3405e64a825f47a434099cfa 241 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 75 5.1E-20 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS11815 7ad474af3405e64a825f47a434099cfa 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 35 49 1.2E-8 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS11815 7ad474af3405e64a825f47a434099cfa 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 65 1.2E-8 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS11815 7ad474af3405e64a825f47a434099cfa 241 Gene3D G3DSA:1.10.10.10 4 76 2.1E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS11815 7ad474af3405e64a825f47a434099cfa 241 Pfam PF07702 UTRA domain 96 235 2.1E-28 T 29-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AM354_RS21120 9b6a5bbd2c286e9972cc1c938db2aa4f 540 PIRSF PIRSF006630 2 252 2.5E-79 T 29-03-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 AM354_RS21120 9b6a5bbd2c286e9972cc1c938db2aa4f 540 PIRSF PIRSF006630 246 539 1.7E-121 T 29-03-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 AM354_RS21120 9b6a5bbd2c286e9972cc1c938db2aa4f 540 TIGRFAM TIGR00552 nadE: NAD+ synthetase 265 511 1.1E-58 T 29-03-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 AM354_RS21120 9b6a5bbd2c286e9972cc1c938db2aa4f 540 ProSitePatterns PS00920 Nitrilases / cyanide hydratase signature 1. 37 52 - T 29-03-2018 IPR000132 Nitrilase/cyanide hydratase, conserved site GO:0016810 AM354_RS21120 9b6a5bbd2c286e9972cc1c938db2aa4f 540 Pfam PF00795 Carbon-nitrogen hydrolase 7 237 9.9E-26 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AM354_RS21120 9b6a5bbd2c286e9972cc1c938db2aa4f 540 Gene3D G3DSA:3.60.110.10 1 247 1.3E-61 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AM354_RS21120 9b6a5bbd2c286e9972cc1c938db2aa4f 540 SUPERFAMILY SSF56317 4 242 9.55E-63 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AM354_RS21120 9b6a5bbd2c286e9972cc1c938db2aa4f 540 Gene3D G3DSA:3.40.50.620 261 539 6.2E-63 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS21120 9b6a5bbd2c286e9972cc1c938db2aa4f 540 Pfam PF02540 NAD synthase 264 512 3.3E-71 T 29-03-2018 IPR022310 NAD/GMP synthase AM354_RS21120 9b6a5bbd2c286e9972cc1c938db2aa4f 540 SUPERFAMILY SSF52402 259 520 7.22E-78 T 29-03-2018 AM354_RS07720 339998f1d022d48576884d01e88e01df 670 Gene3D G3DSA:4.10.860.10 608 670 3.3E-17 T 29-03-2018 IPR001943 UVR domain GO:0005515 AM354_RS07720 339998f1d022d48576884d01e88e01df 670 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 5 663 0.0 T 29-03-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 AM354_RS07720 339998f1d022d48576884d01e88e01df 670 Gene3D G3DSA:3.40.50.300 415 588 1.1E-31 T 29-03-2018 AM354_RS07720 339998f1d022d48576884d01e88e01df 670 Pfam PF12344 Ultra-violet resistance protein B 552 593 1.7E-20 T 29-03-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain AM354_RS07720 339998f1d022d48576884d01e88e01df 670 Pfam PF04851 Type III restriction enzyme, res subunit 13 92 2.3E-9 T 29-03-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AM354_RS07720 339998f1d022d48576884d01e88e01df 670 SUPERFAMILY SSF52540 3 415 5.67E-135 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS07720 339998f1d022d48576884d01e88e01df 670 Pfam PF02151 UvrB/uvrC motif 631 665 4.5E-9 T 29-03-2018 IPR001943 UVR domain GO:0005515 AM354_RS07720 339998f1d022d48576884d01e88e01df 670 Gene3D G3DSA:3.40.50.300 10 408 3.0E-33 T 29-03-2018 AM354_RS07720 339998f1d022d48576884d01e88e01df 670 Pfam PF00271 Helicase conserved C-terminal domain 435 544 1.5E-17 T 29-03-2018 IPR001650 Helicase, C-terminal AM354_RS07720 339998f1d022d48576884d01e88e01df 670 SUPERFAMILY SSF52540 459 581 9.24E-36 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS07720 339998f1d022d48576884d01e88e01df 670 SUPERFAMILY SSF52540 37 82 9.24E-36 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS07720 339998f1d022d48576884d01e88e01df 670 SMART SM00487 9 425 1.1E-27 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AM354_RS07720 339998f1d022d48576884d01e88e01df 670 Hamap MF_00204 UvrABC system protein B [uvrB]. 3 665 43.75 T 29-03-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 AM354_RS07720 339998f1d022d48576884d01e88e01df 670 SUPERFAMILY SSF46600 623 666 2.09E-12 T 29-03-2018 IPR001943 UVR domain GO:0005515 AM354_RS07720 339998f1d022d48576884d01e88e01df 670 SMART SM00490 460 546 8.9E-20 T 29-03-2018 IPR001650 Helicase, C-terminal AM354_RS08350 014afe217fe5d8a3d3edcacbdbadd374 220 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 14 219 7.5E-59 T 29-03-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 AM354_RS08350 014afe217fe5d8a3d3edcacbdbadd374 220 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 10 220 31.631 T 29-03-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 AM354_RS08350 014afe217fe5d8a3d3edcacbdbadd374 220 SUPERFAMILY SSF52374 11 220 2.87E-57 T 29-03-2018 AM354_RS08350 014afe217fe5d8a3d3edcacbdbadd374 220 Pfam PF01467 Cytidylyltransferase-like 14 194 1.3E-33 T 29-03-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AM354_RS08350 014afe217fe5d8a3d3edcacbdbadd374 220 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 13 75 2.1E-11 T 29-03-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AM354_RS08350 014afe217fe5d8a3d3edcacbdbadd374 220 Gene3D G3DSA:3.40.50.620 6 220 1.2E-56 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS20840 931d4f1308051e066e8f485144c9ecdf 113 SUPERFAMILY SSF55166 13 107 2.86E-15 T 29-03-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AM354_RS20840 931d4f1308051e066e8f485144c9ecdf 113 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 47 107 6.4E-11 T 29-03-2018 AM354_RS20840 931d4f1308051e066e8f485144c9ecdf 113 Gene3D G3DSA:3.30.1380.10 7 107 1.5E-8 T 29-03-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AM354_RS03280 7cb642eced2474b376a19364ff5fdef0 680 SUPERFAMILY SSF56935 50 680 1.67E-106 T 29-03-2018 AM354_RS03280 7cb642eced2474b376a19364ff5fdef0 680 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 50 680 2.7E-177 T 29-03-2018 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0004872|GO:0005215|GO:0006810|GO:0019867 AM354_RS03280 7cb642eced2474b376a19364ff5fdef0 680 Gene3D G3DSA:2.40.170.20 173 680 2.2E-70 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS03280 7cb642eced2474b376a19364ff5fdef0 680 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 57 - T 29-03-2018 IPR010916 TonB box, conserved site AM354_RS03280 7cb642eced2474b376a19364ff5fdef0 680 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 51 680 4.4E-139 T 29-03-2018 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0004872|GO:0005215|GO:0006810|GO:0019867 AM354_RS03280 7cb642eced2474b376a19364ff5fdef0 680 Pfam PF07715 TonB-dependent Receptor Plug Domain 65 167 2.3E-25 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS03280 7cb642eced2474b376a19364ff5fdef0 680 Pfam PF00593 TonB dependent receptor 250 678 7.2E-45 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS03280 7cb642eced2474b376a19364ff5fdef0 680 Gene3D G3DSA:2.170.130.10 49 172 9.5E-29 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS11455 958e34242f6b1fca9c1e29c7648d22cf 217 SMART SM00882 5 201 6.5E-72 T 29-03-2018 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 Reactome: R-HSA-77108 AM354_RS11455 958e34242f6b1fca9c1e29c7648d22cf 217 Gene3D G3DSA:3.40.1080.10 2 213 5.3E-66 T 29-03-2018 AM354_RS11455 958e34242f6b1fca9c1e29c7648d22cf 217 ProSitePatterns PS01274 Coenzyme A transferases signature 2. 43 51 - T 29-03-2018 IPR004164 Coenzyme A transferase active site GO:0008152|GO:0008410 Reactome: R-HSA-77108 AM354_RS11455 958e34242f6b1fca9c1e29c7648d22cf 217 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 3 207 2.1E-99 T 29-03-2018 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 Reactome: R-HSA-77108 AM354_RS11455 958e34242f6b1fca9c1e29c7648d22cf 217 SUPERFAMILY SSF100950 3 216 5.93E-74 T 29-03-2018 AM354_RS11455 958e34242f6b1fca9c1e29c7648d22cf 217 Pfam PF01144 Coenzyme A transferase 5 200 2.8E-41 T 29-03-2018 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 Reactome: R-HSA-77108 AM354_RS07900 70e1a18ddff252ebf5e5424af0d6af9f 353 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 29 341 1.1E-122 T 29-03-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 AM354_RS07900 70e1a18ddff252ebf5e5424af0d6af9f 353 Gene3D G3DSA:3.40.50.10800 118 209 5.3E-19 T 29-03-2018 AM354_RS07900 70e1a18ddff252ebf5e5424af0d6af9f 353 Gene3D G3DSA:3.40.50.10800 23 109 6.1E-18 T 29-03-2018 AM354_RS07900 70e1a18ddff252ebf5e5424af0d6af9f 353 SUPERFAMILY SSF142754 29 341 2.09E-105 T 29-03-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 AM354_RS07900 70e1a18ddff252ebf5e5424af0d6af9f 353 Pfam PF02445 Quinolinate synthetase A protein 31 340 7.0E-103 T 29-03-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 AM354_RS07900 70e1a18ddff252ebf5e5424af0d6af9f 353 Gene3D G3DSA:3.40.50.10800 210 323 2.2E-32 T 29-03-2018 AM354_RS07900 70e1a18ddff252ebf5e5424af0d6af9f 353 Hamap MF_00567 Quinolinate synthase A [nadA]. 1 347 71.031 T 29-03-2018 IPR023513 Quinolinate synthase A, type 1 GO:0016765 MetaCyc: PWY-5316|MetaCyc: PWY-7342 AM354_RS15505 193d37fb67cbb643ac4140c1451e00ca 278 Gene3D G3DSA:1.20.1540.10 92 272 3.3E-37 T 29-03-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 AM354_RS15505 193d37fb67cbb643ac4140c1451e00ca 278 TIGRFAM TIGR04239 rhombo_GlpG: rhomboid family protease GlpG 4 272 9.3E-120 T 29-03-2018 IPR023662 Rhomboid protease GlpG GO:0004252|GO:0006508|GO:0016021 AM354_RS15505 193d37fb67cbb643ac4140c1451e00ca 278 Hamap MF_01594 Rhomboid protease GlpG [glpG]. 1 275 48.015 T 29-03-2018 IPR023662 Rhomboid protease GlpG GO:0004252|GO:0006508|GO:0016021 AM354_RS15505 193d37fb67cbb643ac4140c1451e00ca 278 Pfam PF01694 Rhomboid family 132 271 8.2E-28 T 29-03-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 AM354_RS15505 193d37fb67cbb643ac4140c1451e00ca 278 SUPERFAMILY SSF144091 93 271 4.19E-43 T 29-03-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 AM354_RS15505 193d37fb67cbb643ac4140c1451e00ca 278 Pfam PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease 1 84 1.3E-29 T 29-03-2018 IPR022732 Peptidase S54, GlpG peptidase, N-terminal GO:0004252|GO:0016021 AM354_RS04810 99c0480b297e723974659c185582fc92 265 SUPERFAMILY SSF56752 1 254 1.44E-64 T 29-03-2018 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 AM354_RS04810 99c0480b297e723974659c185582fc92 265 ProSitePatterns PS00770 Aminotransferases class-IV signature. 173 202 - T 29-03-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824|GO:0008152 Reactome: R-HSA-70895 AM354_RS04810 99c0480b297e723974659c185582fc92 265 Pfam PF01063 Amino-transferase class IV 24 245 2.5E-40 T 29-03-2018 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 AM354_RS04810 99c0480b297e723974659c185582fc92 265 Gene3D G3DSA:3.30.470.10 1 109 5.1E-23 T 29-03-2018 AM354_RS04810 99c0480b297e723974659c185582fc92 265 Gene3D G3DSA:3.20.10.10 113 258 4.6E-29 T 29-03-2018 AM354_RS04810 99c0480b297e723974659c185582fc92 265 TIGRFAM TIGR03461 pabC_Proteo: aminodeoxychorismate lyase 3 263 4.5E-109 T 29-03-2018 IPR017824 Aminodeoxychorismate lyase, class IV GO:0008696|GO:0030170|GO:0046656 KEGG: 00790+4.1.3.38|MetaCyc: PWY-6543 AM354_RS09715 745d9b29f2d51d483ed81034aef1bb9a 226 Gene3D G3DSA:3.40.50.2300 1 120 2.1E-33 T 29-03-2018 AM354_RS09715 745d9b29f2d51d483ed81034aef1bb9a 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 221 1.7E-23 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS09715 745d9b29f2d51d483ed81034aef1bb9a 226 Pfam PF00072 Response regulator receiver domain 4 112 2.4E-25 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS09715 745d9b29f2d51d483ed81034aef1bb9a 226 SMART SM00448 1 111 2.2E-40 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS09715 745d9b29f2d51d483ed81034aef1bb9a 226 TIGRFAM TIGR01387 cztR_silR_copR: heavy metal response regulator 3 221 5.3E-91 T 29-03-2018 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response GO:0003677|GO:0006355 AM354_RS09715 745d9b29f2d51d483ed81034aef1bb9a 226 Gene3D G3DSA:1.10.10.10 121 226 1.6E-27 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS09715 745d9b29f2d51d483ed81034aef1bb9a 226 SMART SM00862 146 221 2.6E-22 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS09715 745d9b29f2d51d483ed81034aef1bb9a 226 SUPERFAMILY SSF52172 1 173 3.92E-37 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS25640 f6a844811177fb0664c2be16e04eebcc 216 SUPERFAMILY SSF52172 8 136 3.27E-34 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS25640 f6a844811177fb0664c2be16e04eebcc 216 Gene3D G3DSA:3.40.50.2300 6 138 7.2E-36 T 29-03-2018 AM354_RS25640 f6a844811177fb0664c2be16e04eebcc 216 SMART SM00448 7 120 1.3E-34 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS25640 f6a844811177fb0664c2be16e04eebcc 216 Gene3D G3DSA:1.10.10.10 139 215 1.8E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS25640 f6a844811177fb0664c2be16e04eebcc 216 ProSitePatterns PS00622 LuxR-type HTH domain signature. 170 197 - T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS25640 f6a844811177fb0664c2be16e04eebcc 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 170 2.3E-13 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS25640 f6a844811177fb0664c2be16e04eebcc 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 186 2.3E-13 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS25640 f6a844811177fb0664c2be16e04eebcc 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 186 198 2.3E-13 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS25640 f6a844811177fb0664c2be16e04eebcc 216 Pfam PF00196 Bacterial regulatory proteins, luxR family 155 209 1.4E-21 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS25640 f6a844811177fb0664c2be16e04eebcc 216 Pfam PF00072 Response regulator receiver domain 9 120 3.0E-31 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS25640 f6a844811177fb0664c2be16e04eebcc 216 SMART SM00421 153 210 1.1E-23 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS25640 f6a844811177fb0664c2be16e04eebcc 216 SUPERFAMILY SSF46894 144 212 4.76E-20 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS15745 fee75ef9fd91373b5bf5a1f75c0ee4b9 266 Pfam PF01226 Formate/nitrite transporter 20 247 3.0E-57 T 29-03-2018 IPR000292 Formate/nitrite transporter GO:0005215|GO:0006810|GO:0016020 AM354_RS15745 fee75ef9fd91373b5bf5a1f75c0ee4b9 266 TIGRFAM TIGR00790 fnt: formate/nitrite transporter 20 250 3.0E-80 T 29-03-2018 IPR000292 Formate/nitrite transporter GO:0005215|GO:0006810|GO:0016020 AM354_RS15745 fee75ef9fd91373b5bf5a1f75c0ee4b9 266 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 157 167 - T 29-03-2018 IPR024002 Formate/nitrite transporter, conserved site AM354_RS15745 fee75ef9fd91373b5bf5a1f75c0ee4b9 266 ProSitePatterns PS01005 Formate and nitrite transporters signature 1. 73 82 - T 29-03-2018 IPR024002 Formate/nitrite transporter, conserved site AM354_RS15745 fee75ef9fd91373b5bf5a1f75c0ee4b9 266 Gene3D G3DSA:1.20.1080.10 1 261 1.6E-60 T 29-03-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 AM354_RS00875 f6aa15fc1982840fd2a17264f33c29ec 196 SUPERFAMILY SSF52540 7 196 6.59E-75 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS00875 f6aa15fc1982840fd2a17264f33c29ec 196 TIGRFAM TIGR00708 cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase 24 196 3.1E-78 T 29-03-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 AM354_RS00875 f6aa15fc1982840fd2a17264f33c29ec 196 PIRSF PIRSF015617 2 196 1.5E-66 T 29-03-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 AM354_RS00875 f6aa15fc1982840fd2a17264f33c29ec 196 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 28 196 1.8E-58 T 29-03-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 AM354_RS00875 f6aa15fc1982840fd2a17264f33c29ec 196 Gene3D G3DSA:3.40.50.300 6 196 6.0E-70 T 29-03-2018 AM354_RS00875 f6aa15fc1982840fd2a17264f33c29ec 196 Pfam PF12557 Cob(I)alamin adenosyltransferase N terminal 3 21 5.8E-6 T 29-03-2018 IPR025826 Cob(I)alamin adenosyltransferase N-terminal domain KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 AM354_RS07070 3699def7fbe0537b410196caa383337a 207 SUPERFAMILY SSF47616 80 200 4.32E-27 T 29-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like AM354_RS07070 3699def7fbe0537b410196caa383337a 207 Pfam PF13410 Glutathione S-transferase, C-terminal domain 126 188 5.6E-6 T 29-03-2018 AM354_RS07070 3699def7fbe0537b410196caa383337a 207 Pfam PF13417 Glutathione S-transferase, N-terminal domain 4 78 2.4E-15 T 29-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AM354_RS07070 3699def7fbe0537b410196caa383337a 207 Gene3D G3DSA:3.40.30.10 1 97 7.8E-27 T 29-03-2018 AM354_RS07070 3699def7fbe0537b410196caa383337a 207 SUPERFAMILY SSF52833 1 85 1.42E-21 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS07070 3699def7fbe0537b410196caa383337a 207 Gene3D G3DSA:1.20.1050.10 98 203 4.6E-23 T 29-03-2018 AM354_RS24735 7ea5c37abec09de88d812ae9452a27d6 139 SUPERFAMILY SSF54593 2 138 6.22E-35 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS24735 7ea5c37abec09de88d812ae9452a27d6 139 Gene3D G3DSA:3.10.180.10 2 139 1.4E-22 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS24735 7ea5c37abec09de88d812ae9452a27d6 139 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 4 136 1.4E-9 T 29-03-2018 IPR028973 PhnB-like AM354_RS03420 083770efd82bdd6a9cc98d51b85bdd01 349 Gene3D G3DSA:1.20.1170.10 106 335 1.2E-5 T 29-03-2018 AM354_RS15770 26782419362b582f7e4c27b9694f55f0 340 Gene3D G3DSA:1.25.40.10 26 173 7.4E-7 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS15770 26782419362b582f7e4c27b9694f55f0 340 Pfam PF02698 DUF218 domain 171 298 8.6E-20 T 29-03-2018 IPR003848 Domain of unknown function DUF218 AM354_RS15770 26782419362b582f7e4c27b9694f55f0 340 Gene3D G3DSA:3.40.50.620 174 301 1.4E-26 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS15770 26782419362b582f7e4c27b9694f55f0 340 SUPERFAMILY SSF48452 44 120 7.12E-6 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS23945 ab1e807aa4a2551409f8fe9930bcbc8b 268 Gene3D G3DSA:3.40.190.10 139 254 0.14 T 29-03-2018 AM354_RS23945 ab1e807aa4a2551409f8fe9930bcbc8b 268 Pfam PF13531 Bacterial extracellular solute-binding protein 26 253 1.4E-37 T 29-03-2018 AM354_RS23945 ab1e807aa4a2551409f8fe9930bcbc8b 268 SUPERFAMILY SSF53850 25 253 4.25E-38 T 29-03-2018 AM354_RS23945 ab1e807aa4a2551409f8fe9930bcbc8b 268 Gene3D G3DSA:3.40.190.10 25 138 3.0E-15 T 29-03-2018 AM354_RS21375 217f670ceebbc323ebef5fbad47ac413 400 Gene3D G3DSA:1.10.443.10 205 376 1.0E-25 T 29-03-2018 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM354_RS21375 217f670ceebbc323ebef5fbad47ac413 400 SUPERFAMILY SSF56349 99 384 4.71E-60 T 29-03-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AM354_RS21375 217f670ceebbc323ebef5fbad47ac413 400 Pfam PF13356 Arm DNA-binding domain 2 87 7.2E-18 T 29-03-2018 IPR025166 Integrase, DNA-binding domain AM354_RS21375 217f670ceebbc323ebef5fbad47ac413 400 Pfam PF00589 Phage integrase family 206 373 7.0E-21 T 29-03-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM354_RS21375 217f670ceebbc323ebef5fbad47ac413 400 Pfam PF14659 Phage integrase, N-terminal SAM-like domain 99 148 5.4E-5 T 29-03-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 AM354_RS21375 217f670ceebbc323ebef5fbad47ac413 400 Gene3D G3DSA:1.10.150.130 93 204 2.0E-16 T 29-03-2018 IPR023109 Integrase/recombinase, N-terminal AM354_RS05330 de45346530ebf8aed270a5bda2f33875 86 SUPERFAMILY SSF159871 4 86 4.19E-18 T 29-03-2018 IPR010854 Domain of unknown function DUF1471 AM354_RS05330 de45346530ebf8aed270a5bda2f33875 86 Gene3D G3DSA:3.30.1660.10 22 86 1.4E-17 T 29-03-2018 IPR025543 Dodecin-like AM354_RS05330 de45346530ebf8aed270a5bda2f33875 86 Pfam PF07338 Protein of unknown function (DUF1471) 34 85 1.2E-12 T 29-03-2018 IPR010854 Domain of unknown function DUF1471 AM354_RS11505 acc1f66e16f79822d2a641528b3296fa 263 SMART SM00382 37 220 1.6E-16 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS11505 acc1f66e16f79822d2a641528b3296fa 263 SUPERFAMILY SSF52540 10 224 1.17E-64 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS11505 acc1f66e16f79822d2a641528b3296fa 263 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS11505 acc1f66e16f79822d2a641528b3296fa 263 Gene3D G3DSA:3.40.50.300 3 230 2.5E-59 T 29-03-2018 AM354_RS11505 acc1f66e16f79822d2a641528b3296fa 263 Pfam PF00005 ABC transporter 28 167 2.0E-30 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS02125 389373265738cc72a04cb05ed48e6ba2 409 Pfam PF08376 Nitrate and nitrite sensing 36 277 8.1E-47 T 29-03-2018 IPR013587 Nitrate/nitrite sensing protein AM354_RS02125 389373265738cc72a04cb05ed48e6ba2 409 Gene3D G3DSA:1.10.10.10 343 395 4.8E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS02125 389373265738cc72a04cb05ed48e6ba2 409 SUPERFAMILY SSF52172 321 393 6.96E-14 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS02125 389373265738cc72a04cb05ed48e6ba2 409 Pfam PF03861 ANTAR domain 342 393 7.0E-18 T 29-03-2018 IPR005561 ANTAR domain GO:0003723 AM354_RS02125 389373265738cc72a04cb05ed48e6ba2 409 SMART SM01012 339 394 1.2E-21 T 29-03-2018 IPR005561 ANTAR domain GO:0003723 AM354_RS26090 8fa2a5969ef8a569a67aca8b17f18720 188 Gene3D G3DSA:3.10.180.10 8 187 3.2E-77 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS26090 8fa2a5969ef8a569a67aca8b17f18720 188 Pfam PF06185 YecM protein 11 186 2.2E-74 T 29-03-2018 IPR010393 Protein of unknown function DUF991 AM354_RS26090 8fa2a5969ef8a569a67aca8b17f18720 188 SUPERFAMILY SSF54593 5 187 1.18E-69 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS11435 586cdf0dfee94f307ff801894d9f24aa 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 1.7E-14 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11435 586cdf0dfee94f307ff801894d9f24aa 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 1.7E-14 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11435 586cdf0dfee94f307ff801894d9f24aa 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 1.7E-14 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11435 586cdf0dfee94f307ff801894d9f24aa 256 TIGRFAM TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase 6 256 1.9E-103 T 29-03-2018 IPR011294 3-hydroxybutyrate dehydrogenase GO:0003858|GO:0055114 AM354_RS11435 586cdf0dfee94f307ff801894d9f24aa 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM354_RS11435 586cdf0dfee94f307ff801894d9f24aa 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 4.5E-39 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11435 586cdf0dfee94f307ff801894d9f24aa 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 4.5E-39 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11435 586cdf0dfee94f307ff801894d9f24aa 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 4.5E-39 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11435 586cdf0dfee94f307ff801894d9f24aa 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 4.5E-39 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11435 586cdf0dfee94f307ff801894d9f24aa 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 4.5E-39 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11435 586cdf0dfee94f307ff801894d9f24aa 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 4.5E-39 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11435 586cdf0dfee94f307ff801894d9f24aa 256 SUPERFAMILY SSF51735 1 255 1.18E-73 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS11435 586cdf0dfee94f307ff801894d9f24aa 256 Gene3D G3DSA:3.40.50.720 45 256 1.3E-58 T 29-03-2018 AM354_RS11435 586cdf0dfee94f307ff801894d9f24aa 256 Gene3D G3DSA:3.40.50.720 1 44 5.9E-8 T 29-03-2018 AM354_RS11435 586cdf0dfee94f307ff801894d9f24aa 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 253 5.1E-55 T 29-03-2018 AM354_RS14060 fc814234c450a378a5fd9d5f796dfb5a 502 SMART SM00382 38 187 9.6E-6 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS14060 fc814234c450a378a5fd9d5f796dfb5a 502 Pfam PF07728 AAA domain (dynein-related subfamily) 41 171 2.0E-25 T 29-03-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 AM354_RS14060 fc814234c450a378a5fd9d5f796dfb5a 502 Pfam PF12592 Protein of unknown function (DUF3763) 443 495 1.5E-18 T 29-03-2018 IPR022547 ATPase, RavA, C-terminal GO:0016820 AM354_RS14060 fc814234c450a378a5fd9d5f796dfb5a 502 Gene3D G3DSA:3.40.50.300 5 245 1.3E-18 T 29-03-2018 AM354_RS14060 fc814234c450a378a5fd9d5f796dfb5a 502 SUPERFAMILY SSF52540 14 285 3.07E-18 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS08195 a06d2cebb750aef4b3e97e73d634bcf5 554 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 340 528 3.9E-63 T 29-03-2018 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AM354_RS08195 a06d2cebb750aef4b3e97e73d634bcf5 554 Gene3D G3DSA:1.10.1160.10 261 338 5.6E-35 T 29-03-2018 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 AM354_RS08195 a06d2cebb750aef4b3e97e73d634bcf5 554 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 28 551 0.0 T 29-03-2018 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AM354_RS08195 a06d2cebb750aef4b3e97e73d634bcf5 554 Gene3D G3DSA:2.40.240.10 464 547 1.4E-34 T 29-03-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AM354_RS08195 a06d2cebb750aef4b3e97e73d634bcf5 554 SUPERFAMILY SSF50715 340 547 5.75E-80 T 29-03-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AM354_RS08195 a06d2cebb750aef4b3e97e73d634bcf5 554 Gene3D G3DSA:3.40.50.620 4 42 0.14 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS08195 a06d2cebb750aef4b3e97e73d634bcf5 554 Gene3D G3DSA:2.40.240.10 344 463 2.5E-47 T 29-03-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AM354_RS08195 a06d2cebb750aef4b3e97e73d634bcf5 554 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 28 337 9.8E-127 T 29-03-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 AM354_RS08195 a06d2cebb750aef4b3e97e73d634bcf5 554 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 1 549 53.954 T 29-03-2018 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 AM354_RS08195 a06d2cebb750aef4b3e97e73d634bcf5 554 Gene3D G3DSA:3.40.50.620 155 260 3.0E-22 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS08195 a06d2cebb750aef4b3e97e73d634bcf5 554 Gene3D G3DSA:3.40.50.620 43 154 5.3E-39 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS08195 a06d2cebb750aef4b3e97e73d634bcf5 554 PRINTS PR00987 Glutamyl-tRNA synthetase signature 60 73 9.4E-10 T 29-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 AM354_RS08195 a06d2cebb750aef4b3e97e73d634bcf5 554 PRINTS PR00987 Glutamyl-tRNA synthetase signature 45 56 9.4E-10 T 29-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 AM354_RS08195 a06d2cebb750aef4b3e97e73d634bcf5 554 PRINTS PR00987 Glutamyl-tRNA synthetase signature 31 43 9.4E-10 T 29-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 AM354_RS08195 a06d2cebb750aef4b3e97e73d634bcf5 554 PRINTS PR00987 Glutamyl-tRNA synthetase signature 210 220 9.4E-10 T 29-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 AM354_RS08195 a06d2cebb750aef4b3e97e73d634bcf5 554 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 34 45 - T 29-03-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS08195 a06d2cebb750aef4b3e97e73d634bcf5 554 SUPERFAMILY SSF52374 10 337 6.97E-103 T 29-03-2018 AM354_RS08055 739af0219b90e235431bee7f53ffc459 214 SUPERFAMILY SSF53182 1 214 4.97E-74 T 29-03-2018 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like AM354_RS08055 739af0219b90e235431bee7f53ffc459 214 ProSitePatterns PS01334 Pyrrolidone-carboxylate peptidase cysteine active site. 130 144 - T 29-03-2018 IPR033694 Pyroglutamyl peptidase I, Cys active site AM354_RS08055 739af0219b90e235431bee7f53ffc459 214 Gene3D G3DSA:3.40.630.20 1 214 1.4E-66 T 29-03-2018 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like AM354_RS08055 739af0219b90e235431bee7f53ffc459 214 Pfam PF01470 Pyroglutamyl peptidase 3 201 2.9E-82 T 29-03-2018 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like AM354_RS08055 739af0219b90e235431bee7f53ffc459 214 PIRSF PIRSF015592 1 212 1.9E-87 T 29-03-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 AM354_RS08055 739af0219b90e235431bee7f53ffc459 214 Hamap MF_00417 Pyrrolidone-carboxylate peptidase [pcp]. 2 200 41.963 T 29-03-2018 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 AM354_RS08055 739af0219b90e235431bee7f53ffc459 214 ProSitePatterns PS01333 Pyrrolidone-carboxylate peptidase glutamic acid active site. 69 85 - T 29-03-2018 IPR033693 Pyroglutamyl peptidase I, Glu active site AM354_RS08055 739af0219b90e235431bee7f53ffc459 214 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 161 173 1.3E-48 T 29-03-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 AM354_RS08055 739af0219b90e235431bee7f53ffc459 214 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 80 100 1.3E-48 T 29-03-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 AM354_RS08055 739af0219b90e235431bee7f53ffc459 214 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 132 148 1.3E-48 T 29-03-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 AM354_RS08055 739af0219b90e235431bee7f53ffc459 214 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 62 74 1.3E-48 T 29-03-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 AM354_RS08055 739af0219b90e235431bee7f53ffc459 214 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 4 27 1.3E-48 T 29-03-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 AM354_RS08055 739af0219b90e235431bee7f53ffc459 214 TIGRFAM TIGR00504 pyro_pdase: pyroglutamyl-peptidase I 3 211 9.3E-91 T 29-03-2018 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 AM354_RS24230 1e62d96df637e3b715190477a177d204 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 136 9.2E-8 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS24230 1e62d96df637e3b715190477a177d204 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 9.2E-8 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS24230 1e62d96df637e3b715190477a177d204 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 9.2E-8 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS24230 1e62d96df637e3b715190477a177d204 252 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 135 163 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM354_RS24230 1e62d96df637e3b715190477a177d204 252 SUPERFAMILY SSF51735 4 250 3.92E-72 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS24230 1e62d96df637e3b715190477a177d204 252 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 163 186 5.9E-57 T 29-03-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 AM354_RS24230 1e62d96df637e3b715190477a177d204 252 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 98 118 5.9E-57 T 29-03-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 AM354_RS24230 1e62d96df637e3b715190477a177d204 252 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 228 247 5.9E-57 T 29-03-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 AM354_RS24230 1e62d96df637e3b715190477a177d204 252 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 78 95 5.9E-57 T 29-03-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 AM354_RS24230 1e62d96df637e3b715190477a177d204 252 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 202 221 5.9E-57 T 29-03-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 AM354_RS24230 1e62d96df637e3b715190477a177d204 252 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 16 33 5.9E-57 T 29-03-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 AM354_RS24230 1e62d96df637e3b715190477a177d204 252 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 249 7.1E-57 T 29-03-2018 AM354_RS24230 1e62d96df637e3b715190477a177d204 252 TIGRFAM TIGR04316 dhbA_paeA: 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase 12 250 5.4E-110 T 29-03-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 AM354_RS24230 1e62d96df637e3b715190477a177d204 252 Gene3D G3DSA:3.40.50.720 2 48 8.1E-9 T 29-03-2018 AM354_RS24230 1e62d96df637e3b715190477a177d204 252 Gene3D G3DSA:3.40.50.720 49 252 2.8E-58 T 29-03-2018 AM354_RS24070 1cb20a03f3806d8f20638e9f2657141a 249 Gene3D G3DSA:3.10.180.10 8 106 1.8E-7 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS24070 1cb20a03f3806d8f20638e9f2657141a 249 SUPERFAMILY SSF54593 36 110 1.73E-9 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS24070 1cb20a03f3806d8f20638e9f2657141a 249 Gene3D G3DSA:3.10.180.10 107 249 9.0E-8 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS24070 1cb20a03f3806d8f20638e9f2657141a 249 SUPERFAMILY SSF54593 171 247 6.36E-5 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS00990 3b20a005d3878eeec45465a7fcd5c672 251 SMART SM00934 25 246 2.7E-100 T 29-03-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AM354_RS00990 3b20a005d3878eeec45465a7fcd5c672 251 Gene3D G3DSA:3.20.20.70 20 251 2.2E-70 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS00990 3b20a005d3878eeec45465a7fcd5c672 251 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 27 247 1.3E-55 T 29-03-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AM354_RS00990 3b20a005d3878eeec45465a7fcd5c672 251 SUPERFAMILY SSF51366 22 249 8.04E-80 T 29-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 AM354_RS00990 3b20a005d3878eeec45465a7fcd5c672 251 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 23 251 39.833 T 29-03-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AM354_RS00990 3b20a005d3878eeec45465a7fcd5c672 251 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 77 90 - T 29-03-2018 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AM354_RS00990 3b20a005d3878eeec45465a7fcd5c672 251 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 24 246 1.2E-50 T 29-03-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AM354_RS09320 6a01aa3fdc145e1244ba24d700a3660d 1083 Pfam PF13476 AAA domain 5 280 5.1E-21 T 29-03-2018 AM354_RS09320 6a01aa3fdc145e1244ba24d700a3660d 1083 TIGRFAM TIGR00618 sbcc: exonuclease SbcC 1 1073 1.6E-199 T 29-03-2018 IPR004592 Nuclease SbcC, gammaproteobacteria type AM354_RS09320 6a01aa3fdc145e1244ba24d700a3660d 1083 SUPERFAMILY SSF52540 846 1055 3.63E-25 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS09320 6a01aa3fdc145e1244ba24d700a3660d 1083 SUPERFAMILY SSF52540 1 58 3.63E-25 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS09320 6a01aa3fdc145e1244ba24d700a3660d 1083 Pfam PF13558 Putative exonuclease SbcCD, C subunit 966 1037 5.4E-15 T 29-03-2018 AM354_RS09320 6a01aa3fdc145e1244ba24d700a3660d 1083 Gene3D G3DSA:3.40.50.300 1 228 7.3E-31 T 29-03-2018 AM354_RS09320 6a01aa3fdc145e1244ba24d700a3660d 1083 Gene3D G3DSA:3.40.50.300 698 1081 1.8E-14 T 29-03-2018 AM354_RS09320 6a01aa3fdc145e1244ba24d700a3660d 1083 Gene3D G3DSA:1.20.120.330 433 617 4.1E-6 T 29-03-2018 AM354_RS09320 6a01aa3fdc145e1244ba24d700a3660d 1083 SUPERFAMILY SSF52540 1 273 3.63E-32 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS06400 597dc67b22a6259f0ca3f61825623e2f 355 Gene3D G3DSA:3.40.50.2300 37 157 3.2E-15 T 29-03-2018 AM354_RS06400 597dc67b22a6259f0ca3f61825623e2f 355 Pfam PF13407 Periplasmic binding protein domain 50 298 6.3E-30 T 29-03-2018 IPR025997 Periplasmic binding protein AM354_RS06400 597dc67b22a6259f0ca3f61825623e2f 355 SUPERFAMILY SSF53822 38 311 3.53E-42 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS06400 597dc67b22a6259f0ca3f61825623e2f 355 Gene3D G3DSA:3.40.50.2300 158 304 1.3E-20 T 29-03-2018 AM354_RS17335 147c9899bf55f6f6e69cc6cbd6691e87 260 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 8 237 5.0E-30 T 29-03-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 AM354_RS17335 147c9899bf55f6f6e69cc6cbd6691e87 260 Gene3D G3DSA:3.40.830.10 1 260 7.3E-84 T 29-03-2018 AM354_RS17335 147c9899bf55f6f6e69cc6cbd6691e87 260 PIRSF PIRSF006157 1 260 1.4E-89 T 29-03-2018 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type GO:0008270|GO:0016701|GO:0055114 AM354_RS17335 147c9899bf55f6f6e69cc6cbd6691e87 260 SUPERFAMILY SSF53213 5 259 1.83E-90 T 29-03-2018 AM354_RS12600 b0f266acb267c3de07164c25ec61aa09 103 Pfam PF04341 Protein of unknown function, DUF485 11 98 2.4E-35 T 29-03-2018 IPR007436 Protein of unknown function DUF485 AM354_RS10970 343e077e6483a4c63995ce4ec46186da 109 Gene3D G3DSA:1.10.1270.10 8 108 4.7E-25 T 29-03-2018 AM354_RS10970 343e077e6483a4c63995ce4ec46186da 109 Hamap MF_00475 Trp operon repressor [trpR]. 15 108 24.317 T 29-03-2018 IPR013335 Trp repressor, bacterial GO:0006355 AM354_RS10970 343e077e6483a4c63995ce4ec46186da 109 PIRSF PIRSF003196 10 108 3.0E-41 T 29-03-2018 IPR013335 Trp repressor, bacterial GO:0006355 AM354_RS10970 343e077e6483a4c63995ce4ec46186da 109 SUPERFAMILY SSF48295 5 105 1.36E-30 T 29-03-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AM354_RS10970 343e077e6483a4c63995ce4ec46186da 109 Pfam PF01371 Trp repressor protein 17 103 1.0E-30 T 29-03-2018 IPR000831 Trp repressor GO:0003700|GO:0005622|GO:0006355 AM354_RS10970 343e077e6483a4c63995ce4ec46186da 109 TIGRFAM TIGR01321 TrpR: trp operon repressor 12 104 2.1E-37 T 29-03-2018 IPR013335 Trp repressor, bacterial GO:0006355 AM354_RS10970 343e077e6483a4c63995ce4ec46186da 109 ProDom PD012582 REPRESSOR TRANSCRIPTION TRP OPERON DNA-BINDING REGULATION HOMOLOG AROH FOR TRYPTOPHAN 10 101 4.0E-33 T 29-03-2018 IPR013335 Trp repressor, bacterial GO:0006355 AM354_RS00200 93d9eacd012bb76c4196648a7ee76eeb 521 Pfam PF06450 Bacterial Na+/H+ antiporter B (NhaB) 1 511 1.5E-276 T 29-03-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 AM354_RS00200 93d9eacd012bb76c4196648a7ee76eeb 521 Hamap MF_01599 Na(+)/H(+) antiporter NhaB [nhaB]. 1 521 355.899 T 29-03-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 AM354_RS00200 93d9eacd012bb76c4196648a7ee76eeb 521 TIGRFAM TIGR00774 NhaB: Na+/H+ antiporter NhaB 1 511 1.3E-275 T 29-03-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 AM354_RS01885 07cffb76fd687830ae270f62fbd0f7ac 407 Gene3D G3DSA:3.50.50.60 156 343 5.4E-14 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS01885 07cffb76fd687830ae270f62fbd0f7ac 407 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 287 1.7E-19 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS01885 07cffb76fd687830ae270f62fbd0f7ac 407 Gene3D G3DSA:3.50.50.60 1 155 1.3E-26 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS01885 07cffb76fd687830ae270f62fbd0f7ac 407 SUPERFAMILY SSF51905 1 310 4.44E-33 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS01885 07cffb76fd687830ae270f62fbd0f7ac 407 PRINTS PR00419 Adrenodoxin reductase family signature 30 43 4.6E-9 T 29-03-2018 AM354_RS01885 07cffb76fd687830ae270f62fbd0f7ac 407 PRINTS PR00419 Adrenodoxin reductase family signature 6 28 4.6E-9 T 29-03-2018 AM354_RS16170 6530334f9f7619ea15ae4dfdc5b03c74 314 Gene3D G3DSA:3.40.50.170 2 209 9.4E-70 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM354_RS16170 6530334f9f7619ea15ae4dfdc5b03c74 314 Gene3D G3DSA:3.10.25.10 210 314 3.1E-33 T 29-03-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM354_RS16170 6530334f9f7619ea15ae4dfdc5b03c74 314 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 5 312 3.3E-115 T 29-03-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 AM354_RS16170 6530334f9f7619ea15ae4dfdc5b03c74 314 SUPERFAMILY SSF50486 208 309 2.04E-37 T 29-03-2018 IPR011034 Formyl transferase, C-terminal-like GO:0003824 AM354_RS16170 6530334f9f7619ea15ae4dfdc5b03c74 314 Pfam PF00551 Formyl transferase 6 183 3.0E-52 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM354_RS16170 6530334f9f7619ea15ae4dfdc5b03c74 314 SUPERFAMILY SSF53328 5 207 4.97E-67 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM354_RS16170 6530334f9f7619ea15ae4dfdc5b03c74 314 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 5 307 37.391 T 29-03-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 AM354_RS16170 6530334f9f7619ea15ae4dfdc5b03c74 314 Pfam PF02911 Formyl transferase, C-terminal domain 207 304 9.2E-33 T 29-03-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM354_RS20725 b8d09f2a9ce99483a1569d4b7d271b48 215 Pfam PF00440 Bacterial regulatory proteins, tetR family 27 72 8.3E-16 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS20725 b8d09f2a9ce99483a1569d4b7d271b48 215 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 48 71 2.4E-11 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS20725 b8d09f2a9ce99483a1569d4b7d271b48 215 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 27 40 2.4E-11 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS20725 b8d09f2a9ce99483a1569d4b7d271b48 215 Gene3D G3DSA:1.10.357.10 22 212 8.8E-30 T 29-03-2018 AM354_RS20725 b8d09f2a9ce99483a1569d4b7d271b48 215 ProSitePatterns PS01081 TetR-type HTH domain signature. 39 70 - T 29-03-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AM354_RS20725 b8d09f2a9ce99483a1569d4b7d271b48 215 SUPERFAMILY SSF46689 14 94 8.48E-17 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS18805 b28cd56300c9848815713066d599c5a5 90 ProDom PD029191 TRAFFICKING IRON PROBABLE FE2 YGGX FEII 3D-STRUCTURE OXIDATIVE CONTROL DIRECT 1 76 2.0E-35 T 29-03-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 AM354_RS18805 b28cd56300c9848815713066d599c5a5 90 Hamap MF_00686 Probable Fe(2+)-trafficking protein [yggX]. 1 88 27.677 T 29-03-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 AM354_RS18805 b28cd56300c9848815713066d599c5a5 90 SUPERFAMILY SSF111148 1 89 2.09E-39 T 29-03-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 AM354_RS18805 b28cd56300c9848815713066d599c5a5 90 PIRSF PIRSF029827 1 90 2.9E-43 T 29-03-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 AM354_RS18805 b28cd56300c9848815713066d599c5a5 90 Pfam PF04362 Bacterial Fe(2+) trafficking 1 88 2.7E-39 T 29-03-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 AM354_RS18805 b28cd56300c9848815713066d599c5a5 90 Gene3D G3DSA:1.10.3880.10 2 89 3.4E-39 T 29-03-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 AM354_RS19455 d80b20c63a5f0cfbc8fc28f74038a2e9 400 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 5 391 1.5E-136 T 29-03-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 AM354_RS19455 d80b20c63a5f0cfbc8fc28f74038a2e9 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 2.2E-19 T 29-03-2018 AM354_RS19455 d80b20c63a5f0cfbc8fc28f74038a2e9 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 156 171 2.2E-19 T 29-03-2018 AM354_RS19455 d80b20c63a5f0cfbc8fc28f74038a2e9 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 281 296 2.2E-19 T 29-03-2018 AM354_RS19455 d80b20c63a5f0cfbc8fc28f74038a2e9 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 296 312 2.2E-19 T 29-03-2018 AM354_RS19455 d80b20c63a5f0cfbc8fc28f74038a2e9 400 SUPERFAMILY SSF51905 4 177 8.87E-62 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS19455 d80b20c63a5f0cfbc8fc28f74038a2e9 400 SUPERFAMILY SSF51905 268 385 8.87E-62 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS19455 d80b20c63a5f0cfbc8fc28f74038a2e9 400 Pfam PF01494 FAD binding domain 4 343 3.7E-31 T 29-03-2018 IPR002938 FAD-binding domain GO:0071949 AM354_RS19455 d80b20c63a5f0cfbc8fc28f74038a2e9 400 Gene3D G3DSA:3.50.50.60 1 365 2.7E-51 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS19455 d80b20c63a5f0cfbc8fc28f74038a2e9 400 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 295 308 - T 29-03-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 AM354_RS22330 247982708fd8d81ff195440647f1e84f 85 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 29-03-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site AM354_RS22330 247982708fd8d81ff195440647f1e84f 85 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 82 5.9E-31 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like AM354_RS22330 247982708fd8d81ff195440647f1e84f 85 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 29-03-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site AM354_RS22330 247982708fd8d81ff195440647f1e84f 85 SUPERFAMILY SSF55594 1 82 1.31E-27 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like AM354_RS22330 247982708fd8d81ff195440647f1e84f 85 Gene3D G3DSA:3.30.1340.10 1 85 1.2E-32 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like AM354_RS22330 247982708fd8d81ff195440647f1e84f 85 Pfam PF00381 PTS HPr component phosphorylation site 3 82 1.0E-28 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like AM354_RS22330 247982708fd8d81ff195440647f1e84f 85 PRINTS PR00107 Phosphocarrier protein signature 38 53 2.5E-20 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like AM354_RS22330 247982708fd8d81ff195440647f1e84f 85 PRINTS PR00107 Phosphocarrier protein signature 53 70 2.5E-20 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like AM354_RS22330 247982708fd8d81ff195440647f1e84f 85 PRINTS PR00107 Phosphocarrier protein signature 13 29 2.5E-20 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like AM354_RS06370 8be53c5ec18d4046bdb09a21e039d600 610 Pfam PF13502 AsmA-like C-terminal region 351 536 2.8E-21 T 29-03-2018 IPR032712 AsmA-like, C-terminal AM354_RS06370 8be53c5ec18d4046bdb09a21e039d600 610 Pfam PF05170 AsmA family 4 268 1.9E-21 T 29-03-2018 IPR007844 AsmA AM354_RS10755 add30d8fd4163fbd8a097400922f5e5a 272 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 11 264 3.7E-89 T 29-03-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 AM354_RS10755 add30d8fd4163fbd8a097400922f5e5a 272 Gene3D G3DSA:3.40.50.150 2 204 9.5E-55 T 29-03-2018 AM354_RS10755 add30d8fd4163fbd8a097400922f5e5a 272 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 9 265 55.739 T 29-03-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 AM354_RS10755 add30d8fd4163fbd8a097400922f5e5a 272 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 41 68 - T 29-03-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 AM354_RS10755 add30d8fd4163fbd8a097400922f5e5a 272 SUPERFAMILY SSF53335 5 265 6.31E-78 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS10755 add30d8fd4163fbd8a097400922f5e5a 272 Pfam PF00398 Ribosomal RNA adenine dimethylase 11 264 1.2E-79 T 29-03-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm AM354_RS10755 add30d8fd4163fbd8a097400922f5e5a 272 Gene3D G3DSA:1.10.8.100 205 269 8.5E-20 T 29-03-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 AM354_RS10755 add30d8fd4163fbd8a097400922f5e5a 272 SMART SM00650 25 198 4.2E-83 T 29-03-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 AM354_RS25305 6d59c4361aba735c37c4b2cda6199012 103 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 1 92 7.8E-20 T 29-03-2018 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 AM354_RS25305 6d59c4361aba735c37c4b2cda6199012 103 Pfam PF04316 Anti-sigma-28 factor, FlgM 37 90 5.4E-11 T 29-03-2018 IPR031316 Anti-sigma-28 factor FlgM, C-terminal AM354_RS25305 6d59c4361aba735c37c4b2cda6199012 103 SUPERFAMILY SSF101498 3 90 3.27E-12 T 29-03-2018 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 AM354_RS25305 6d59c4361aba735c37c4b2cda6199012 103 Gene3D G3DSA:1.10.287.1160 62 90 7.4E-11 T 29-03-2018 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 AM354_RS25240 707b1cb7b598629adc16fb8e532e6626 556 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 294 316 - T 29-03-2018 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site AM354_RS25240 707b1cb7b598629adc16fb8e532e6626 556 Gene3D G3DSA:1.10.287.950 218 320 1.2E-12 T 29-03-2018 AM354_RS25240 707b1cb7b598629adc16fb8e532e6626 556 Gene3D G3DSA:1.10.287.950 321 520 1.8E-47 T 29-03-2018 AM354_RS25240 707b1cb7b598629adc16fb8e532e6626 556 Pfam PF00672 HAMP domain 218 264 3.1E-11 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM354_RS25240 707b1cb7b598629adc16fb8e532e6626 556 Pfam PF02203 Tar ligand binding domain homologue 1 175 2.1E-55 T 29-03-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 AM354_RS25240 707b1cb7b598629adc16fb8e532e6626 556 SMART SM00283 269 516 1.1E-96 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM354_RS25240 707b1cb7b598629adc16fb8e532e6626 556 SUPERFAMILY SSF47170 25 182 1.96E-49 T 29-03-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 AM354_RS25240 707b1cb7b598629adc16fb8e532e6626 556 Gene3D G3DSA:1.20.120.30 23 190 1.4E-43 T 29-03-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain AM354_RS25240 707b1cb7b598629adc16fb8e532e6626 556 SMART SM00319 44 182 2.4E-59 T 29-03-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 AM354_RS25240 707b1cb7b598629adc16fb8e532e6626 556 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 290 319 5.7E-91 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM354_RS25240 707b1cb7b598629adc16fb8e532e6626 556 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 60 75 5.7E-91 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM354_RS25240 707b1cb7b598629adc16fb8e532e6626 556 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 444 473 5.7E-91 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM354_RS25240 707b1cb7b598629adc16fb8e532e6626 556 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 5.7E-91 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM354_RS25240 707b1cb7b598629adc16fb8e532e6626 556 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 396 425 5.7E-91 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM354_RS25240 707b1cb7b598629adc16fb8e532e6626 556 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 367 394 5.7E-91 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM354_RS25240 707b1cb7b598629adc16fb8e532e6626 556 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 191 211 5.7E-91 T 29-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM354_RS25240 707b1cb7b598629adc16fb8e532e6626 556 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 328 484 8.0E-59 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM354_RS25240 707b1cb7b598629adc16fb8e532e6626 556 SMART SM00304 216 268 2.0E-13 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM354_RS25240 707b1cb7b598629adc16fb8e532e6626 556 SUPERFAMILY SSF58104 236 521 9.42E-76 T 29-03-2018 AM354_RS00125 79eb233eb3c817671ae340ebf8bee1d4 109 Pfam PF00893 Small Multidrug Resistance protein 10 99 1.9E-27 T 29-03-2018 IPR000390 Small multidrug resistance protein family GO:0016021 AM354_RS00125 79eb233eb3c817671ae340ebf8bee1d4 109 Hamap MF_01597 Spermidine export protein MdtI [mdtI]. 1 109 30.2 T 29-03-2018 IPR023737 Spermidine export protein MdtI GO:0005886|GO:0015606|GO:0015848 AM354_RS00125 79eb233eb3c817671ae340ebf8bee1d4 109 SUPERFAMILY SSF103481 11 108 1.2E-17 T 29-03-2018 AM354_RS16600 1af1372001351d4071096e1323c1188a 140 Pfam PF03788 LrgA family 30 122 1.3E-25 T 29-03-2018 IPR005538 LrgA/CidA family GO:0016021 AM354_RS11450 ba913a19849cc40c59f2ea498cc935f7 394 Pfam PF00108 Thiolase, N-terminal domain 6 263 5.3E-104 T 29-03-2018 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 AM354_RS11450 ba913a19849cc40c59f2ea498cc935f7 394 Gene3D G3DSA:3.40.47.10 268 391 1.2E-35 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS11450 ba913a19849cc40c59f2ea498cc935f7 394 SUPERFAMILY SSF53901 5 271 4.76E-88 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS11450 ba913a19849cc40c59f2ea498cc935f7 394 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 86 104 - T 29-03-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 AM354_RS11450 ba913a19849cc40c59f2ea498cc935f7 394 PIRSF PIRSF000429 1 394 2.4E-131 T 29-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 AM354_RS11450 ba913a19849cc40c59f2ea498cc935f7 394 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 8 392 4.9E-146 T 29-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 AM354_RS11450 ba913a19849cc40c59f2ea498cc935f7 394 SUPERFAMILY SSF53901 273 393 1.82E-43 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS11450 ba913a19849cc40c59f2ea498cc935f7 394 Pfam PF02803 Thiolase, C-terminal domain 272 393 2.3E-50 T 29-03-2018 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 AM354_RS11450 ba913a19849cc40c59f2ea498cc935f7 394 ProSitePatterns PS00737 Thiolases signature 2. 340 356 - T 29-03-2018 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 AM354_RS11450 ba913a19849cc40c59f2ea498cc935f7 394 Gene3D G3DSA:3.40.47.10 187 267 3.6E-23 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS11450 ba913a19849cc40c59f2ea498cc935f7 394 Gene3D G3DSA:3.40.47.10 1 186 2.5E-42 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS01005 a3be6561893a491045cf2b061784d3f0 248 SUPERFAMILY SSF100950 68 227 1.2E-27 T 29-03-2018 AM354_RS01005 a3be6561893a491045cf2b061784d3f0 248 Pfam PF00455 DeoR C terminal sensor domain 70 226 1.4E-43 T 29-03-2018 IPR014036 DeoR C-terminal sensor domain AM354_RS01005 a3be6561893a491045cf2b061784d3f0 248 Gene3D G3DSA:1.10.10.10 1 56 4.9E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS01005 a3be6561893a491045cf2b061784d3f0 248 ProSitePatterns PS00894 DeoR-type HTH domain signature. 4 38 - T 29-03-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AM354_RS01005 a3be6561893a491045cf2b061784d3f0 248 SUPERFAMILY SSF46785 2 59 7.0E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS01005 a3be6561893a491045cf2b061784d3f0 248 SMART SM00420 4 56 8.4E-18 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS01005 a3be6561893a491045cf2b061784d3f0 248 Pfam PF08220 DeoR-like helix-turn-helix domain 4 59 2.6E-15 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS01005 a3be6561893a491045cf2b061784d3f0 248 SMART SM01134 67 227 3.1E-55 T 29-03-2018 AM354_RS01005 a3be6561893a491045cf2b061784d3f0 248 Gene3D G3DSA:3.40.50.1360 59 239 2.7E-35 T 29-03-2018 AM354_RS01005 a3be6561893a491045cf2b061784d3f0 248 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 22 36 2.0E-5 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS01005 a3be6561893a491045cf2b061784d3f0 248 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 36 54 2.0E-5 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS22820 ad7fb96375616529d601b535970d0af3 673 Gene3D G3DSA:3.40.50.150 9 254 4.7E-86 T 29-03-2018 AM354_RS22820 ad7fb96375616529d601b535970d0af3 673 Hamap MF_01102 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC [mnmC]. 7 665 28.794 T 29-03-2018 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC GO:0004808|GO:0008033|GO:0008168|GO:0016645|GO:0055114 AM354_RS22820 ad7fb96375616529d601b535970d0af3 673 Pfam PF01266 FAD dependent oxidoreductase 268 640 1.8E-47 T 29-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AM354_RS22820 ad7fb96375616529d601b535970d0af3 673 Gene3D G3DSA:3.50.50.60 255 673 6.1E-53 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS22820 ad7fb96375616529d601b535970d0af3 673 TIGRFAM TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 268 670 8.4E-156 T 29-03-2018 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal GO:0008168|GO:0016645|GO:0055114 AM354_RS22820 ad7fb96375616529d601b535970d0af3 673 SUPERFAMILY SSF51905 266 544 2.14E-31 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS22820 ad7fb96375616529d601b535970d0af3 673 Pfam PF05430 S-adenosyl-L-methionine-dependent methyltransferase 119 243 2.6E-47 T 29-03-2018 IPR008471 MnmC-like methyltransferase GO:0016645|GO:0055114 AM354_RS20195 27fafbde9d3a8a1d236c3b1cfee9f825 398 SUPERFAMILY SSF51735 2 150 5.25E-46 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS20195 27fafbde9d3a8a1d236c3b1cfee9f825 398 SUPERFAMILY SSF69055 302 394 6.28E-31 T 29-03-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 AM354_RS20195 27fafbde9d3a8a1d236c3b1cfee9f825 398 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 4 392 46.699 T 29-03-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 AM354_RS20195 27fafbde9d3a8a1d236c3b1cfee9f825 398 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 146 239 4.3E-36 T 29-03-2018 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 AM354_RS20195 27fafbde9d3a8a1d236c3b1cfee9f825 398 Gene3D G3DSA:3.40.50.720 1 150 2.8E-50 T 29-03-2018 AM354_RS20195 27fafbde9d3a8a1d236c3b1cfee9f825 398 PIRSF PIRSF006205 1 397 3.1E-154 T 29-03-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 AM354_RS20195 27fafbde9d3a8a1d236c3b1cfee9f825 398 Gene3D G3DSA:1.10.1740.10 312 396 1.2E-28 T 29-03-2018 AM354_RS20195 27fafbde9d3a8a1d236c3b1cfee9f825 398 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 393 9.0E-180 T 29-03-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 AM354_RS20195 27fafbde9d3a8a1d236c3b1cfee9f825 398 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 4 132 2.7E-46 T 29-03-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 AM354_RS20195 27fafbde9d3a8a1d236c3b1cfee9f825 398 Pfam PF13288 DXP reductoisomerase C-terminal domain 271 387 3.8E-42 T 29-03-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 AM354_RS20195 27fafbde9d3a8a1d236c3b1cfee9f825 398 SUPERFAMILY SSF55347 126 274 1.34E-62 T 29-03-2018 AM354_RS25570 b7fdd62d2f942d0fd6e2a043d1c5ee73 272 SUPERFAMILY SSF63380 7 135 1.38E-12 T 29-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AM354_RS25570 b7fdd62d2f942d0fd6e2a043d1c5ee73 272 Pfam PF08021 Siderophore-interacting FAD-binding domain 16 130 9.7E-36 T 29-03-2018 IPR013113 FAD-binding 9, siderophore-interacting AM354_RS25570 b7fdd62d2f942d0fd6e2a043d1c5ee73 272 Gene3D G3DSA:3.40.50.80 132 272 1.4E-38 T 29-03-2018 AM354_RS25570 b7fdd62d2f942d0fd6e2a043d1c5ee73 272 Gene3D G3DSA:2.40.30.10 5 130 1.6E-28 T 29-03-2018 AM354_RS25570 b7fdd62d2f942d0fd6e2a043d1c5ee73 272 Pfam PF04954 Siderophore-interacting protein 137 253 1.8E-33 T 29-03-2018 IPR007037 Siderophore-interacting protein AM354_RS18605 61b56088f45fdd5157c07b5445d8de4b 110 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 10 25 2.5E-5 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS18605 61b56088f45fdd5157c07b5445d8de4b 110 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 45 60 2.5E-5 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS18605 61b56088f45fdd5157c07b5445d8de4b 110 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 60 75 2.5E-5 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS18605 61b56088f45fdd5157c07b5445d8de4b 110 Gene3D G3DSA:1.10.10.10 1 93 1.5E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS18605 61b56088f45fdd5157c07b5445d8de4b 110 SUPERFAMILY SSF46785 1 93 4.33E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS18605 61b56088f45fdd5157c07b5445d8de4b 110 Pfam PF12840 Helix-turn-helix domain 9 69 1.3E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS18605 61b56088f45fdd5157c07b5445d8de4b 110 SMART SM00418 8 89 1.5E-7 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS00180 5ac7a65db9afc23158d69a00c555162a 340 SUPERFAMILY SSF53955 33 338 5.44E-93 T 29-03-2018 IPR023346 Lysozyme-like domain AM354_RS00180 5ac7a65db9afc23158d69a00c555162a 340 Gene3D G3DSA:1.10.8.350 106 211 8.6E-34 T 29-03-2018 AM354_RS00180 5ac7a65db9afc23158d69a00c555162a 340 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 42 339 2.7E-115 T 29-03-2018 IPR011970 Lytic murein transglycosylase AM354_RS00180 5ac7a65db9afc23158d69a00c555162a 340 Gene3D G3DSA:1.10.530.10 216 340 6.0E-33 T 29-03-2018 AM354_RS00180 5ac7a65db9afc23158d69a00c555162a 340 Pfam PF13406 Transglycosylase SLT domain 43 336 1.3E-104 T 29-03-2018 IPR031304 Transglycosylase SLT domain 2 AM354_RS01820 24a10583b95fe70c2da54b7d04b54d2e 478 SUPERFAMILY SSF51445 2 471 1.1E-162 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily AM354_RS01820 24a10583b95fe70c2da54b7d04b54d2e 478 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 10 24 - T 29-03-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site AM354_RS01820 24a10583b95fe70c2da54b7d04b54d2e 478 Pfam PF00232 Glycosyl hydrolase family 1 4 475 7.0E-133 T 29-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM354_RS01820 24a10583b95fe70c2da54b7d04b54d2e 478 PRINTS PR00131 Glycosyl hydrolase family 1 signature 440 452 1.5E-16 T 29-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM354_RS01820 24a10583b95fe70c2da54b7d04b54d2e 478 PRINTS PR00131 Glycosyl hydrolase family 1 signature 393 404 1.5E-16 T 29-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM354_RS01820 24a10583b95fe70c2da54b7d04b54d2e 478 PRINTS PR00131 Glycosyl hydrolase family 1 signature 306 320 1.5E-16 T 29-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM354_RS01820 24a10583b95fe70c2da54b7d04b54d2e 478 PRINTS PR00131 Glycosyl hydrolase family 1 signature 415 432 1.5E-16 T 29-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM354_RS01820 24a10583b95fe70c2da54b7d04b54d2e 478 PRINTS PR00131 Glycosyl hydrolase family 1 signature 372 380 1.5E-16 T 29-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM354_RS01820 24a10583b95fe70c2da54b7d04b54d2e 478 Gene3D G3DSA:3.20.20.80 3 478 1.7E-151 T 29-03-2018 AM354_RS01820 24a10583b95fe70c2da54b7d04b54d2e 478 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 372 380 - T 29-03-2018 IPR018120 Glycoside hydrolase family 1, active site AM354_RS00780 98bbc8c5a0ee47b03ebc4a99f54804c3 247 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 169 239 6.0E-18 T 29-03-2018 IPR006260 TonB, C-terminal GO:0006810 AM354_RS00780 98bbc8c5a0ee47b03ebc4a99f54804c3 247 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 172 241 1.6E-19 T 29-03-2018 IPR006260 TonB, C-terminal GO:0006810 AM354_RS00780 98bbc8c5a0ee47b03ebc4a99f54804c3 247 SUPERFAMILY SSF74653 162 238 8.5E-21 T 29-03-2018 AM354_RS00780 98bbc8c5a0ee47b03ebc4a99f54804c3 247 Pfam PF16031 TonB N-terminal region 36 166 5.3E-29 T 29-03-2018 AM354_RS00780 98bbc8c5a0ee47b03ebc4a99f54804c3 247 Gene3D G3DSA:3.30.2420.10 173 247 1.8E-18 T 29-03-2018 AM354_RS00780 98bbc8c5a0ee47b03ebc4a99f54804c3 247 PRINTS PR01374 Gram-negative bacterial tonB protein signature 101 111 2.1E-37 T 29-03-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 AM354_RS00780 98bbc8c5a0ee47b03ebc4a99f54804c3 247 PRINTS PR01374 Gram-negative bacterial tonB protein signature 204 221 2.1E-37 T 29-03-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 AM354_RS00780 98bbc8c5a0ee47b03ebc4a99f54804c3 247 PRINTS PR01374 Gram-negative bacterial tonB protein signature 185 203 2.1E-37 T 29-03-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 AM354_RS00780 98bbc8c5a0ee47b03ebc4a99f54804c3 247 PRINTS PR01374 Gram-negative bacterial tonB protein signature 164 185 2.1E-37 T 29-03-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 AM354_RS06835 bfd54cdcf47d7243ff20e99529591845 240 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS06835 bfd54cdcf47d7243ff20e99529591845 240 Gene3D G3DSA:3.40.50.300 1 240 5.8E-76 T 29-03-2018 AM354_RS06835 bfd54cdcf47d7243ff20e99529591845 240 SMART SM00382 26 213 1.6E-16 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS06835 bfd54cdcf47d7243ff20e99529591845 240 SUPERFAMILY SSF52540 1 235 2.8E-80 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS06835 bfd54cdcf47d7243ff20e99529591845 240 PIRSF PIRSF039085 1 240 4.6E-107 T 29-03-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AM354_RS06835 bfd54cdcf47d7243ff20e99529591845 240 Pfam PF00005 ABC transporter 17 165 2.5E-36 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS22940 cb98e5b413a1884b4e433476eda3cb8e 257 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 224 239 2.9E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM354_RS22940 cb98e5b413a1884b4e433476eda3cb8e 257 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 239 255 2.9E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM354_RS22940 cb98e5b413a1884b4e433476eda3cb8e 257 SUPERFAMILY SSF51182 13 184 5.78E-13 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS22940 cb98e5b413a1884b4e433476eda3cb8e 257 Gene3D G3DSA:2.60.120.10 3 84 5.3E-9 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS22940 cb98e5b413a1884b4e433476eda3cb8e 257 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 208 251 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM354_RS22940 cb98e5b413a1884b4e433476eda3cb8e 257 Pfam PF02311 AraC-like ligand binding domain 20 77 1.2E-5 T 29-03-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AM354_RS22940 cb98e5b413a1884b4e433476eda3cb8e 257 Gene3D G3DSA:1.10.10.60 85 212 7.4E-9 T 29-03-2018 AM354_RS22940 cb98e5b413a1884b4e433476eda3cb8e 257 Gene3D G3DSA:1.10.10.60 213 257 3.0E-9 T 29-03-2018 AM354_RS22940 cb98e5b413a1884b4e433476eda3cb8e 257 SUPERFAMILY SSF46689 209 256 3.18E-9 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS22940 cb98e5b413a1884b4e433476eda3cb8e 257 SMART SM00342 173 255 1.1E-23 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS22940 cb98e5b413a1884b4e433476eda3cb8e 257 Pfam PF12833 Helix-turn-helix domain 179 256 8.1E-23 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS23175 77a91015e7b6ea2073b32c080d91600a 615 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 67 124 8.9E-22 T 29-03-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23175 77a91015e7b6ea2073b32c080d91600a 615 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 361 383 7.5E-8 T 29-03-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 AM354_RS23175 77a91015e7b6ea2073b32c080d91600a 615 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 420 442 7.5E-8 T 29-03-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 AM354_RS23175 77a91015e7b6ea2073b32c080d91600a 615 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 61 85 7.5E-8 T 29-03-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 AM354_RS23175 77a91015e7b6ea2073b32c080d91600a 615 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 87 107 7.5E-8 T 29-03-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 AM354_RS23175 77a91015e7b6ea2073b32c080d91600a 615 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 160 181 1.1E-53 T 29-03-2018 AM354_RS23175 77a91015e7b6ea2073b32c080d91600a 615 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 250 276 1.1E-53 T 29-03-2018 AM354_RS23175 77a91015e7b6ea2073b32c080d91600a 615 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 318 330 1.1E-53 T 29-03-2018 AM354_RS23175 77a91015e7b6ea2073b32c080d91600a 615 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 421 440 1.1E-53 T 29-03-2018 AM354_RS23175 77a91015e7b6ea2073b32c080d91600a 615 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 228 249 1.1E-53 T 29-03-2018 AM354_RS23175 77a91015e7b6ea2073b32c080d91600a 615 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 85 110 1.1E-53 T 29-03-2018 AM354_RS23175 77a91015e7b6ea2073b32c080d91600a 615 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 113 133 1.1E-53 T 29-03-2018 AM354_RS23175 77a91015e7b6ea2073b32c080d91600a 615 Pfam PF00361 Proton-conducting membrane transporter 136 428 3.3E-96 T 29-03-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23175 77a91015e7b6ea2073b32c080d91600a 615 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 2 612 2.8E-232 T 29-03-2018 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS09905 a5bd238e7345c57284cba16978ad885c 257 Pfam PF00795 Carbon-nitrogen hydrolase 6 241 2.3E-31 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AM354_RS09905 a5bd238e7345c57284cba16978ad885c 257 SUPERFAMILY SSF56317 1 249 2.75E-61 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AM354_RS09905 a5bd238e7345c57284cba16978ad885c 257 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 137 157 - T 29-03-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site AM354_RS09905 a5bd238e7345c57284cba16978ad885c 257 Gene3D G3DSA:3.60.110.10 1 254 1.3E-54 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AM354_RS05490 0ab97a7fb5797c89c50e4b08bc1fffe8 438 Gene3D G3DSA:2.10.230.10 3 262 0.0057 T 29-03-2018 AM354_RS05490 0ab97a7fb5797c89c50e4b08bc1fffe8 438 TIGRFAM TIGR00155 pqiA_fam: integral membrane protein, PqiA family 19 424 1.9E-161 T 29-03-2018 IPR005219 Conserved hypothetical protein CHP00155 AM354_RS05490 0ab97a7fb5797c89c50e4b08bc1fffe8 438 Pfam PF04403 Paraquat-inducible protein A 64 214 4.5E-40 T 29-03-2018 IPR007498 Paraquat-inducible protein A AM354_RS05490 0ab97a7fb5797c89c50e4b08bc1fffe8 438 Pfam PF04403 Paraquat-inducible protein A 267 425 6.9E-55 T 29-03-2018 IPR007498 Paraquat-inducible protein A AM354_RS16935 2a9c33c1b83b244feb9bd40fdc8c9b26 328 Pfam PF01380 SIS domain 50 177 3.4E-32 T 29-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AM354_RS16935 2a9c33c1b83b244feb9bd40fdc8c9b26 328 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 50 318 1.1E-124 T 29-03-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 AM354_RS16935 2a9c33c1b83b244feb9bd40fdc8c9b26 328 Pfam PF00571 CBS domain 206 261 8.3E-6 T 29-03-2018 IPR000644 CBS domain AM354_RS16935 2a9c33c1b83b244feb9bd40fdc8c9b26 328 Pfam PF00571 CBS domain 274 325 7.0E-6 T 29-03-2018 IPR000644 CBS domain AM354_RS16935 2a9c33c1b83b244feb9bd40fdc8c9b26 328 Gene3D G3DSA:3.40.50.10490 10 202 1.6E-56 T 29-03-2018 AM354_RS16935 2a9c33c1b83b244feb9bd40fdc8c9b26 328 Gene3D G3DSA:3.10.580.10 203 326 7.0E-22 T 29-03-2018 AM354_RS16935 2a9c33c1b83b244feb9bd40fdc8c9b26 328 PIRSF PIRSF004692 1 328 2.6E-134 T 29-03-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 AM354_RS16935 2a9c33c1b83b244feb9bd40fdc8c9b26 328 SMART SM00116 215 263 9.3 T 29-03-2018 IPR000644 CBS domain AM354_RS16935 2a9c33c1b83b244feb9bd40fdc8c9b26 328 SMART SM00116 280 327 0.68 T 29-03-2018 IPR000644 CBS domain AM354_RS16935 2a9c33c1b83b244feb9bd40fdc8c9b26 328 SUPERFAMILY SSF53697 13 297 6.9E-68 T 29-03-2018 AM354_RS08200 a25d9775cb7aa01e974cb6bbc0d70714 678 SUPERFAMILY SSF51261 527 675 1.92E-52 T 29-03-2018 IPR011055 Duplicated hybrid motif AM354_RS08200 a25d9775cb7aa01e974cb6bbc0d70714 678 Pfam PF02378 Phosphotransferase system, EIIC 12 324 7.1E-76 T 29-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AM354_RS08200 a25d9775cb7aa01e974cb6bbc0d70714 678 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 383 482 1.4E-19 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM354_RS08200 a25d9775cb7aa01e974cb6bbc0d70714 678 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 530 655 1.8E-48 T 29-03-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 AM354_RS08200 a25d9775cb7aa01e974cb6bbc0d70714 678 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 593 605 - T 29-03-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 AM354_RS08200 a25d9775cb7aa01e974cb6bbc0d70714 678 Gene3D G3DSA:2.70.70.10 520 678 7.9E-56 T 29-03-2018 AM354_RS08200 a25d9775cb7aa01e974cb6bbc0d70714 678 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 531 651 8.1E-49 T 29-03-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 AM354_RS08200 a25d9775cb7aa01e974cb6bbc0d70714 678 Pfam PF00367 phosphotransferase system, EIIB 426 457 1.5E-11 T 29-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AM354_RS08200 a25d9775cb7aa01e974cb6bbc0d70714 678 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 435 452 - T 29-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AM354_RS08200 a25d9775cb7aa01e974cb6bbc0d70714 678 SUPERFAMILY SSF55604 422 495 9.15E-18 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM354_RS08200 a25d9775cb7aa01e974cb6bbc0d70714 678 Gene3D G3DSA:3.30.1360.60 420 496 9.4E-22 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM354_RS08200 a25d9775cb7aa01e974cb6bbc0d70714 678 TIGRFAM TIGR01998 PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component 3 493 5.4E-199 T 29-03-2018 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component GO:0008982|GO:0009401|GO:0015572|GO:0016021|GO:0019866 AM354_RS11410 c43d2d7ba129bb3e1e3de4ea678c12ce 306 Gene3D G3DSA:3.10.350.10 43 89 1.0E-4 T 29-03-2018 AM354_RS11410 c43d2d7ba129bb3e1e3de4ea678c12ce 306 Gene3D G3DSA:2.40.440.10 94 233 2.5E-27 T 29-03-2018 AM354_RS11410 c43d2d7ba129bb3e1e3de4ea678c12ce 306 SUPERFAMILY SSF141523 177 233 1.57E-26 T 29-03-2018 AM354_RS11410 c43d2d7ba129bb3e1e3de4ea678c12ce 306 SUPERFAMILY SSF141523 94 148 1.57E-26 T 29-03-2018 AM354_RS11410 c43d2d7ba129bb3e1e3de4ea678c12ce 306 Pfam PF03734 L,D-transpeptidase catalytic domain 100 231 2.7E-16 T 29-03-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AM354_RS09345 d5a42e27caf005c8a75a4eb60b08024a 303 Pfam PF04381 Putative exonuclease, RdgC 2 300 1.8E-128 T 29-03-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 AM354_RS09345 d5a42e27caf005c8a75a4eb60b08024a 303 Hamap MF_00194 Recombination-associated protein RdgC [rdgC]. 2 302 41.527 T 29-03-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 AM354_RS16545 09b5586a83f70cf1b658a6e1df2c7cec 942 ProSitePatterns PS00211 ABC transporters family signature. 830 844 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS16545 09b5586a83f70cf1b658a6e1df2c7cec 942 Pfam PF00005 ABC transporter 806 860 1.3E-5 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS16545 09b5586a83f70cf1b658a6e1df2c7cec 942 Hamap MF_00205 UvrABC system protein A [uvrA]. 1 940 23.023 T 29-03-2018 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 AM354_RS16545 09b5586a83f70cf1b658a6e1df2c7cec 942 SUPERFAMILY SSF52540 1 204 3.28E-45 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS16545 09b5586a83f70cf1b658a6e1df2c7cec 942 SUPERFAMILY SSF52540 445 569 3.28E-45 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS16545 09b5586a83f70cf1b658a6e1df2c7cec 942 Gene3D G3DSA:3.30.190.20 134 248 3.0E-44 T 29-03-2018 AM354_RS16545 09b5586a83f70cf1b658a6e1df2c7cec 942 Gene3D G3DSA:3.40.50.300 4 34 0.003 T 29-03-2018 AM354_RS16545 09b5586a83f70cf1b658a6e1df2c7cec 942 Gene3D G3DSA:3.40.50.300 35 133 1.6E-4 T 29-03-2018 AM354_RS16545 09b5586a83f70cf1b658a6e1df2c7cec 942 ProSitePatterns PS00211 ABC transporters family signature. 487 501 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS16545 09b5586a83f70cf1b658a6e1df2c7cec 942 Gene3D G3DSA:3.40.50.300 613 939 4.5E-55 T 29-03-2018 AM354_RS16545 09b5586a83f70cf1b658a6e1df2c7cec 942 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 4 925 0.0 T 29-03-2018 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 AM354_RS16545 09b5586a83f70cf1b658a6e1df2c7cec 942 Gene3D G3DSA:3.40.50.300 410 612 8.1E-23 T 29-03-2018 AM354_RS16545 09b5586a83f70cf1b658a6e1df2c7cec 942 SUPERFAMILY SSF52540 613 911 2.55E-53 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS16545 09b5586a83f70cf1b658a6e1df2c7cec 942 Gene3D G3DSA:1.10.8.280 285 405 1.0E-36 T 29-03-2018 AM354_RS11015 afc89a6f320747d435f89bde1d31b57a 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 6.5E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS11015 afc89a6f320747d435f89bde1d31b57a 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 6.5E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS11015 afc89a6f320747d435f89bde1d31b57a 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 6.5E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS11015 afc89a6f320747d435f89bde1d31b57a 303 SUPERFAMILY SSF53850 90 291 1.01E-44 T 29-03-2018 AM354_RS11015 afc89a6f320747d435f89bde1d31b57a 303 Gene3D G3DSA:3.40.190.10 91 179 5.8E-17 T 29-03-2018 AM354_RS11015 afc89a6f320747d435f89bde1d31b57a 303 Pfam PF03466 LysR substrate binding domain 90 290 8.3E-45 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS11015 afc89a6f320747d435f89bde1d31b57a 303 Gene3D G3DSA:1.10.10.10 4 86 6.2E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS11015 afc89a6f320747d435f89bde1d31b57a 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 8.5E-20 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS11015 afc89a6f320747d435f89bde1d31b57a 303 SUPERFAMILY SSF46785 6 90 4.58E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS11015 afc89a6f320747d435f89bde1d31b57a 303 Gene3D G3DSA:3.40.190.10 180 262 6.4E-21 T 29-03-2018 AM354_RS06005 84297b181d2a6e3579c6d26d5eacd572 244 SUPERFAMILY SSF48317 25 235 3.4E-12 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM354_RS06005 84297b181d2a6e3579c6d26d5eacd572 244 Pfam PF01569 PAP2 superfamily 111 236 4.9E-10 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM354_RS06005 84297b181d2a6e3579c6d26d5eacd572 244 Gene3D G3DSA:1.20.144.10 21 239 4.5E-10 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM354_RS12175 9bf2bd1bd0c966299e211062d8c1c2ec 566 Pfam PF07244 Surface antigen variable number repeat 178 241 5.6E-8 T 29-03-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 AM354_RS12175 9bf2bd1bd0c966299e211062d8c1c2ec 566 Gene3D G3DSA:3.10.20.310 90 177 4.4E-13 T 29-03-2018 AM354_RS12175 9bf2bd1bd0c966299e211062d8c1c2ec 566 Pfam PF17243 POTRA domain TamA domain 1 14 88 1.4E-20 T 29-03-2018 IPR035243 TamA, POTRA domain 1 AM354_RS12175 9bf2bd1bd0c966299e211062d8c1c2ec 566 Pfam PF01103 Surface antigen 283 563 7.5E-31 T 29-03-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 AM354_RS12175 9bf2bd1bd0c966299e211062d8c1c2ec 566 Gene3D G3DSA:2.40.160.50 209 565 6.3E-62 T 29-03-2018 AM354_RS22885 4efe87eff7dfeed7405b91d8b869b985 166 Pfam PF08534 Redoxin 38 149 1.8E-14 T 29-03-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 AM354_RS22885 4efe87eff7dfeed7405b91d8b869b985 166 SUPERFAMILY SSF52833 11 155 1.31E-27 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS22885 4efe87eff7dfeed7405b91d8b869b985 166 Gene3D G3DSA:3.40.30.10 27 156 4.4E-24 T 29-03-2018 AM354_RS24930 e8540cb423e35abf6f9e545d3a17189d 218 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 134 213 3.9E-16 T 29-03-2018 IPR006260 TonB, C-terminal GO:0006810 AM354_RS24930 e8540cb423e35abf6f9e545d3a17189d 218 SUPERFAMILY SSF74653 97 214 5.89E-22 T 29-03-2018 AM354_RS24930 e8540cb423e35abf6f9e545d3a17189d 218 Gene3D G3DSA:3.30.1150.10 19 218 1.8E-20 T 29-03-2018 AM354_RS24930 e8540cb423e35abf6f9e545d3a17189d 218 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 134 213 4.4E-20 T 29-03-2018 IPR006260 TonB, C-terminal GO:0006810 AM354_RS04955 0a5baf6e420f14dd4ed6194788d10846 412 PRINTS PR01035 Tetracycline resistance protein signature 23 39 8.1E-13 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AM354_RS04955 0a5baf6e420f14dd4ed6194788d10846 412 PRINTS PR01035 Tetracycline resistance protein signature 346 369 8.1E-13 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AM354_RS04955 0a5baf6e420f14dd4ed6194788d10846 412 PRINTS PR01035 Tetracycline resistance protein signature 311 331 8.1E-13 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AM354_RS04955 0a5baf6e420f14dd4ed6194788d10846 412 PRINTS PR01035 Tetracycline resistance protein signature 85 109 8.1E-13 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AM354_RS04955 0a5baf6e420f14dd4ed6194788d10846 412 PRINTS PR01035 Tetracycline resistance protein signature 112 133 8.1E-13 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AM354_RS04955 0a5baf6e420f14dd4ed6194788d10846 412 PRINTS PR01035 Tetracycline resistance protein signature 142 164 8.1E-13 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AM354_RS04955 0a5baf6e420f14dd4ed6194788d10846 412 Pfam PF07690 Major Facilitator Superfamily 18 258 1.7E-36 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS04955 0a5baf6e420f14dd4ed6194788d10846 412 Gene3D G3DSA:1.20.1250.20 8 202 1.4E-37 T 29-03-2018 AM354_RS04955 0a5baf6e420f14dd4ed6194788d10846 412 Gene3D G3DSA:1.20.1250.20 205 412 1.6E-31 T 29-03-2018 AM354_RS04955 0a5baf6e420f14dd4ed6194788d10846 412 SUPERFAMILY SSF103473 9 406 4.01E-72 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS04955 0a5baf6e420f14dd4ed6194788d10846 412 Hamap MF_01528 Multidrug resistance protein MdtG [mdtG]. 1 404 46.302 T 29-03-2018 IPR023692 Multidrug resistance protein MdtG GO:0005215|GO:0005886 AM354_RS21295 552b83bb3aeb5f61386cd730b4ebcc15 373 SUPERFAMILY SSF51604 23 139 1.98E-9 T 29-03-2018 IPR029065 Enolase C-terminal domain-like AM354_RS21295 552b83bb3aeb5f61386cd730b4ebcc15 373 Pfam PF04551 GcpE protein 14 354 3.9E-131 T 29-03-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 AM354_RS21295 552b83bb3aeb5f61386cd730b4ebcc15 373 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 9 352 9.3E-125 T 29-03-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 AM354_RS21295 552b83bb3aeb5f61386cd730b4ebcc15 373 SUPERFAMILY SSF56014 266 354 2.06E-10 T 29-03-2018 AM354_RS21295 552b83bb3aeb5f61386cd730b4ebcc15 373 PIRSF PIRSF004640 1 364 1.5E-147 T 29-03-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 AM354_RS21295 552b83bb3aeb5f61386cd730b4ebcc15 373 Gene3D G3DSA:3.20.20.120 17 205 2.1E-19 T 29-03-2018 IPR029065 Enolase C-terminal domain-like AM354_RS21295 552b83bb3aeb5f61386cd730b4ebcc15 373 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 7 358 34.749 T 29-03-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 AM354_RS20855 9d2e9a1949ba891e4ba0665e3d5b5e5b 89 Pfam PF10963 Phage tail assembly chaperone 9 89 1.6E-33 T 29-03-2018 IPR024406 Phage tail assembly chaperone TAC_10 AM354_RS20855 9d2e9a1949ba891e4ba0665e3d5b5e5b 89 ProDom PD068655 ORF26 3'REGION LYS GENE PRECURSOR ORF30 SIGNAL PHAGE 10 88 7.0E-23 T 29-03-2018 IPR024406 Phage tail assembly chaperone TAC_10 AM354_RS20855 9d2e9a1949ba891e4ba0665e3d5b5e5b 89 Gene3D G3DSA:3.30.2220.10 2 88 1.3E-21 T 29-03-2018 AM354_RS00585 54fb57d21f0603a86b62615f3aa6abae 710 Gene3D G3DSA:3.30.70.370 312 700 7.2E-20 T 29-03-2018 AM354_RS00585 54fb57d21f0603a86b62615f3aa6abae 710 SUPERFAMILY SSF53098 5 192 2.82E-12 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS00585 54fb57d21f0603a86b62615f3aa6abae 710 Pfam PF00476 DNA polymerase family A 285 481 3.7E-9 T 29-03-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS00585 54fb57d21f0603a86b62615f3aa6abae 710 Gene3D G3DSA:3.30.420.10 2 205 5.2E-15 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS00585 54fb57d21f0603a86b62615f3aa6abae 710 SMART SM00482 372 674 6.4E-9 T 29-03-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS00585 54fb57d21f0603a86b62615f3aa6abae 710 SUPERFAMILY SSF56672 537 707 4.11E-69 T 29-03-2018 AM354_RS00585 54fb57d21f0603a86b62615f3aa6abae 710 SUPERFAMILY SSF56672 369 496 4.11E-69 T 29-03-2018 AM354_RS00585 54fb57d21f0603a86b62615f3aa6abae 710 SUPERFAMILY SSF56672 186 341 4.11E-69 T 29-03-2018 AM354_RS25995 24ca6e450a4d40ac30d2e8413c25a2c9 457 Gene3D G3DSA:3.60.120.10 2 452 6.3E-152 T 29-03-2018 IPR005801 ADC synthase GO:0009058 AM354_RS25995 24ca6e450a4d40ac30d2e8413c25a2c9 457 PRINTS PR00095 Anthranilate synthase component I signature 305 318 2.2E-17 T 29-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AM354_RS25995 24ca6e450a4d40ac30d2e8413c25a2c9 457 PRINTS PR00095 Anthranilate synthase component I signature 291 304 2.2E-17 T 29-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AM354_RS25995 24ca6e450a4d40ac30d2e8413c25a2c9 457 PRINTS PR00095 Anthranilate synthase component I signature 400 414 2.2E-17 T 29-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AM354_RS25995 24ca6e450a4d40ac30d2e8413c25a2c9 457 PRINTS PR00095 Anthranilate synthase component I signature 385 399 2.2E-17 T 29-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AM354_RS25995 24ca6e450a4d40ac30d2e8413c25a2c9 457 TIGRFAM TIGR00553 pabB: aminodeoxychorismate synthase, component I 107 445 4.5E-129 T 29-03-2018 IPR005802 Para-aminobenzoate synthase, component I GO:0009396 KEGG: 00790+2.6.1.85|MetaCyc: PWY-6543 AM354_RS25995 24ca6e450a4d40ac30d2e8413c25a2c9 457 Pfam PF00425 chorismate binding enzyme 189 443 2.4E-94 T 29-03-2018 IPR015890 Chorismate-utilising enzyme, C-terminal AM354_RS25995 24ca6e450a4d40ac30d2e8413c25a2c9 457 Pfam PF04715 Anthranilate synthase component I, N terminal region 19 154 2.4E-26 T 29-03-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AM354_RS25995 24ca6e450a4d40ac30d2e8413c25a2c9 457 SUPERFAMILY SSF56322 8 451 1.44E-143 T 29-03-2018 IPR005801 ADC synthase GO:0009058 AM354_RS03695 1441c8547d6bd9c41395388e611f1cf9 407 SUPERFAMILY SSF51556 67 367 5.35E-84 T 29-03-2018 IPR032466 Metal-dependent hydrolase AM354_RS03695 1441c8547d6bd9c41395388e611f1cf9 407 Gene3D G3DSA:3.20.20.140 78 366 1.1E-54 T 29-03-2018 AM354_RS03695 1441c8547d6bd9c41395388e611f1cf9 407 SUPERFAMILY SSF51338 6 67 1.09E-28 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM354_RS03695 1441c8547d6bd9c41395388e611f1cf9 407 SUPERFAMILY SSF51338 368 405 1.09E-28 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM354_RS03695 1441c8547d6bd9c41395388e611f1cf9 407 Gene3D G3DSA:2.30.40.10 5 77 8.5E-21 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM354_RS03695 1441c8547d6bd9c41395388e611f1cf9 407 Pfam PF01979 Amidohydrolase family 64 381 3.2E-17 T 29-03-2018 IPR006680 Amidohydrolase-related GO:0016787 AM354_RS03695 1441c8547d6bd9c41395388e611f1cf9 407 TIGRFAM TIGR01224 hutI: imidazolonepropionase 29 405 2.0E-155 T 29-03-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AM354_RS03695 1441c8547d6bd9c41395388e611f1cf9 407 Hamap MF_00372 Imidazolonepropionase [hutI]. 8 406 42.369 T 29-03-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AM354_RS24130 dfd486b0f2000a9ae1b189509ca8cc7c 242 TIGRFAM TIGR03541 reg_near_HchA: LuxR family transcriptional regulatory, chaperone HchA-associated 7 237 2.8E-99 T 29-03-2018 IPR019941 Transcription regulator LuxR, chaperone HchA-associated AM354_RS24130 dfd486b0f2000a9ae1b189509ca8cc7c 242 SMART SM00421 174 231 2.8E-18 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS24130 dfd486b0f2000a9ae1b189509ca8cc7c 242 Gene3D G3DSA:3.30.450.80 1 169 3.2E-26 T 29-03-2018 AM354_RS24130 dfd486b0f2000a9ae1b189509ca8cc7c 242 SUPERFAMILY SSF75516 15 167 1.44E-14 T 29-03-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain AM354_RS24130 dfd486b0f2000a9ae1b189509ca8cc7c 242 Pfam PF00196 Bacterial regulatory proteins, luxR family 176 230 9.3E-16 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS24130 dfd486b0f2000a9ae1b189509ca8cc7c 242 Pfam PF03472 Autoinducer binding domain 25 161 6.3E-16 T 29-03-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain AM354_RS24130 dfd486b0f2000a9ae1b189509ca8cc7c 242 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 207 219 2.4E-10 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS24130 dfd486b0f2000a9ae1b189509ca8cc7c 242 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 177 191 2.4E-10 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS24130 dfd486b0f2000a9ae1b189509ca8cc7c 242 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 191 207 2.4E-10 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS24130 dfd486b0f2000a9ae1b189509ca8cc7c 242 SUPERFAMILY SSF46894 163 237 4.08E-18 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS24130 dfd486b0f2000a9ae1b189509ca8cc7c 242 Gene3D G3DSA:1.10.10.10 170 242 2.9E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS20045 961c9bca1a42fe98daac7ad0c5f8535d 417 SUPERFAMILY SSF53187 332 408 1.88E-53 T 29-03-2018 AM354_RS20045 961c9bca1a42fe98daac7ad0c5f8535d 417 SUPERFAMILY SSF53187 189 285 1.88E-53 T 29-03-2018 AM354_RS20045 961c9bca1a42fe98daac7ad0c5f8535d 417 Gene3D G3DSA:3.40.630.40 186 413 6.0E-57 T 29-03-2018 AM354_RS20045 961c9bca1a42fe98daac7ad0c5f8535d 417 SMART SM00646 251 405 4.7E-66 T 29-03-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 AM354_RS20045 961c9bca1a42fe98daac7ad0c5f8535d 417 Pfam PF11741 AMIN domain 39 142 2.2E-26 T 29-03-2018 IPR021731 AMIN domain AM354_RS20045 961c9bca1a42fe98daac7ad0c5f8535d 417 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 191 405 3.3E-50 T 29-03-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 AM354_RS00190 01d397684c7ec7529d407a800868ea2a 148 Hamap MF_00676 UPF0260 protein YcgN [ycgN]. 2 145 40.389 T 29-03-2018 IPR008228 Uncharacterised conserved protein UCP006173 AM354_RS00190 01d397684c7ec7529d407a800868ea2a 148 PIRSF PIRSF006173 1 145 3.9E-64 T 29-03-2018 IPR008228 Uncharacterised conserved protein UCP006173 AM354_RS00190 01d397684c7ec7529d407a800868ea2a 148 Pfam PF03692 Putative zinc- or iron-chelating domain 24 92 2.9E-7 T 29-03-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein AM354_RS15695 37313b03b25673383b699dc95ab53ce7 120 Pfam PF10748 Protein of unknown function (DUF2531) 10 94 4.5E-9 T 29-03-2018 IPR019684 HofP protein AM354_RS18180 9930ecb56f582cc337d28ff95ae2784c 220 SUPERFAMILY SSF49401 61 220 9.94E-28 T 29-03-2018 IPR008966 Adhesion domain AM354_RS18180 9930ecb56f582cc337d28ff95ae2784c 220 Gene3D G3DSA:2.60.40.1090 59 220 1.2E-22 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS11775 eb915eec0cbc0f0ef01a1da3ed4a843a 174 Gene3D G3DSA:3.40.50.360 1 174 7.5E-34 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS11775 eb915eec0cbc0f0ef01a1da3ed4a843a 174 SUPERFAMILY SSF52218 1 172 5.35E-46 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS11775 eb915eec0cbc0f0ef01a1da3ed4a843a 174 Pfam PF02525 Flavodoxin-like fold 3 165 1.4E-41 T 29-03-2018 IPR003680 Flavodoxin-like fold AM354_RS25510 d1782c7278ecf55d6162e203e5a55d3c 330 Gene3D G3DSA:3.40.50.1100 149 328 4.4E-26 T 29-03-2018 AM354_RS25510 d1782c7278ecf55d6162e203e5a55d3c 330 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 16 318 6.7E-54 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM354_RS25510 d1782c7278ecf55d6162e203e5a55d3c 330 PIRSF PIRSF006278 1 330 2.1E-97 T 29-03-2018 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase AM354_RS25510 d1782c7278ecf55d6162e203e5a55d3c 330 SUPERFAMILY SSF53686 8 328 4.85E-88 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM354_RS25510 d1782c7278ecf55d6162e203e5a55d3c 330 Hamap MF_01045 D-cysteine desulfhydrase [dcyD]. 2 330 64.144 T 29-03-2018 IPR023702 D-cysteine desulphhydrase, bacterial GO:0019148 KEGG: 00270+4.4.1.15 AM354_RS25510 d1782c7278ecf55d6162e203e5a55d3c 330 TIGRFAM TIGR01275 ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family 13 330 3.7E-129 T 29-03-2018 IPR005966 D-cysteine desulfhydrase GO:0003824 KEGG: 00270+4.4.1.15 AM354_RS25510 d1782c7278ecf55d6162e203e5a55d3c 330 Gene3D G3DSA:3.40.50.1100 51 148 2.3E-30 T 29-03-2018 AM354_RS11975 ada6d235fb92c86e97fe337fedbda5ee 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 10 88 1.0E-38 T 29-03-2018 AM354_RS11975 ada6d235fb92c86e97fe337fedbda5ee 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 6 89 1.8E-39 T 29-03-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS11975 ada6d235fb92c86e97fe337fedbda5ee 89 SUPERFAMILY SSF47060 3 89 7.95E-35 T 29-03-2018 IPR009068 S15/NS1, RNA-binding AM354_RS11975 ada6d235fb92c86e97fe337fedbda5ee 89 SMART SM01387 8 88 2.9E-52 T 29-03-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS11975 ada6d235fb92c86e97fe337fedbda5ee 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 22.254 T 29-03-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS11975 ada6d235fb92c86e97fe337fedbda5ee 89 Pfam PF00312 Ribosomal protein S15 8 88 1.4E-37 T 29-03-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS11975 ada6d235fb92c86e97fe337fedbda5ee 89 Gene3D G3DSA:1.10.287.10 2 89 2.1E-36 T 29-03-2018 AM354_RS11975 ada6d235fb92c86e97fe337fedbda5ee 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 29-03-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS25895 fbfb40914df1389b7016053314d89d50 91 Pfam PF13974 YebO-like protein 16 91 8.1E-27 T 29-03-2018 IPR025594 YebO-like protein AM354_RS17280 46ba54a8b1e29cb44a1cb083256bcb17 242 SMART SM01207 40 215 1.5E-86 T 29-03-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 AM354_RS17280 46ba54a8b1e29cb44a1cb083256bcb17 242 Pfam PF02660 Glycerol-3-phosphate acyltransferase 41 214 6.0E-51 T 29-03-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 AM354_RS17280 46ba54a8b1e29cb44a1cb083256bcb17 242 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 32 224 2.7E-79 T 29-03-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 AM354_RS17280 46ba54a8b1e29cb44a1cb083256bcb17 242 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 37 223 18.718 T 29-03-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 AM354_RS22895 2f98ad282eda9580987708c12f79bd0c 331 SUPERFAMILY SSF103481 60 163 9.29E-14 T 29-03-2018 AM354_RS22895 2f98ad282eda9580987708c12f79bd0c 331 Pfam PF00892 EamA-like transporter family 25 159 1.0E-15 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM354_RS22895 2f98ad282eda9580987708c12f79bd0c 331 Pfam PF00892 EamA-like transporter family 172 324 1.5E-14 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM354_RS22895 2f98ad282eda9580987708c12f79bd0c 331 SUPERFAMILY SSF103481 241 326 1.09E-13 T 29-03-2018 AM354_RS10515 5326184805bb2bb3938e23ee59248611 134 TIGRFAM TIGR00586 mutt: mutator mutT protein 1 126 1.2E-51 T 29-03-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 AM354_RS10515 5326184805bb2bb3938e23ee59248611 134 Pfam PF00293 NUDIX domain 4 122 1.3E-21 T 29-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AM354_RS10515 5326184805bb2bb3938e23ee59248611 134 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 29-03-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AM354_RS10515 5326184805bb2bb3938e23ee59248611 134 Gene3D G3DSA:3.90.79.10 2 134 3.9E-34 T 29-03-2018 AM354_RS10515 5326184805bb2bb3938e23ee59248611 134 SUPERFAMILY SSF55811 1 126 1.18E-38 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 AM354_RS10515 5326184805bb2bb3938e23ee59248611 134 PRINTS PR00502 NUDIX hydrolase family signature 47 62 1.2E-10 T 29-03-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AM354_RS10515 5326184805bb2bb3938e23ee59248611 134 PRINTS PR00502 NUDIX hydrolase family signature 33 47 1.2E-10 T 29-03-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AM354_RS10515 5326184805bb2bb3938e23ee59248611 134 PRINTS PR01401 Mutator MutT protein signature 77 90 2.1E-10 T 29-03-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 AM354_RS10515 5326184805bb2bb3938e23ee59248611 134 PRINTS PR01401 Mutator MutT protein signature 2 23 2.1E-10 T 29-03-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 AM354_RS24455 65acb98758576227b90e305f8ee2286a 217 Gene3D G3DSA:3.40.1080.10 4 215 4.3E-52 T 29-03-2018 AM354_RS24455 65acb98758576227b90e305f8ee2286a 217 SMART SM00882 7 204 1.2E-63 T 29-03-2018 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 Reactome: R-HSA-77108 AM354_RS24455 65acb98758576227b90e305f8ee2286a 217 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 5 209 4.7E-88 T 29-03-2018 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 Reactome: R-HSA-77108 AM354_RS24455 65acb98758576227b90e305f8ee2286a 217 SUPERFAMILY SSF100950 5 214 5.12E-60 T 29-03-2018 AM354_RS24455 65acb98758576227b90e305f8ee2286a 217 ProSitePatterns PS01274 Coenzyme A transferases signature 2. 45 53 - T 29-03-2018 IPR004164 Coenzyme A transferase active site GO:0008152|GO:0008410 Reactome: R-HSA-77108 AM354_RS24455 65acb98758576227b90e305f8ee2286a 217 Pfam PF01144 Coenzyme A transferase 7 202 1.8E-34 T 29-03-2018 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 Reactome: R-HSA-77108 AM354_RS15600 bb33fff7462c4368fcb6fd9a0b8a6657 74 Gene3D G3DSA:2.30.30.90 1 71 7.3E-15 T 29-03-2018 AM354_RS15600 bb33fff7462c4368fcb6fd9a0b8a6657 74 SUPERFAMILY SSF50037 2 69 1.8E-15 T 29-03-2018 IPR008988 Transcriptional repressor, C-terminal AM354_RS15600 bb33fff7462c4368fcb6fd9a0b8a6657 74 Pfam PF04023 FeoA domain 2 64 7.8E-10 T 29-03-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 AM354_RS15600 bb33fff7462c4368fcb6fd9a0b8a6657 74 SMART SM00899 1 72 1.9E-10 T 29-03-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 AM354_RS18210 e30412adbbc06bb7ca8329f02bed3240 456 Pfam PF00772 DnaB-like helicase N terminal domain 6 107 2.3E-31 T 29-03-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 AM354_RS18210 e30412adbbc06bb7ca8329f02bed3240 456 SUPERFAMILY SSF52540 180 432 7.34E-48 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS18210 e30412adbbc06bb7ca8329f02bed3240 456 SUPERFAMILY SSF48024 6 115 7.45E-35 T 29-03-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 AM354_RS18210 e30412adbbc06bb7ca8329f02bed3240 456 SMART SM00382 199 399 0.0019 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS18210 e30412adbbc06bb7ca8329f02bed3240 456 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 6 441 3.7E-145 T 29-03-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 AM354_RS18210 e30412adbbc06bb7ca8329f02bed3240 456 Gene3D G3DSA:3.40.50.300 165 449 1.1E-59 T 29-03-2018 AM354_RS18210 e30412adbbc06bb7ca8329f02bed3240 456 Gene3D G3DSA:1.10.860.10 1 147 1.0E-38 T 29-03-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal AM354_RS18210 e30412adbbc06bb7ca8329f02bed3240 456 Pfam PF03796 DnaB-like helicase C terminal domain 182 438 1.2E-95 T 29-03-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 AM354_RS11485 50e4f319e23f8926f56e795e3618e563 456 SUPERFAMILY SSF55931 133 456 1.13E-85 T 29-03-2018 AM354_RS11485 50e4f319e23f8926f56e795e3618e563 456 SMART SM01230 133 378 2.0E-77 T 29-03-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AM354_RS11485 50e4f319e23f8926f56e795e3618e563 456 SUPERFAMILY SSF54368 37 130 1.83E-5 T 29-03-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AM354_RS11485 50e4f319e23f8926f56e795e3618e563 456 Gene3D G3DSA:3.30.590.10 134 456 2.0E-80 T 29-03-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 AM354_RS11485 50e4f319e23f8926f56e795e3618e563 456 Gene3D G3DSA:3.10.20.70 21 133 5.4E-12 T 29-03-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AM354_RS11485 50e4f319e23f8926f56e795e3618e563 456 Pfam PF00120 Glutamine synthetase, catalytic domain 134 453 3.6E-82 T 29-03-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AM354_RS09225 1cb034362fd26faa6c494b6da7c55cde 322 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 126 288 1.2E-55 T 29-03-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AM354_RS09225 1cb034362fd26faa6c494b6da7c55cde 322 Pfam PF02355 Protein export membrane protein 117 300 6.7E-72 T 29-03-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial AM354_RS09225 1cb034362fd26faa6c494b6da7c55cde 322 SUPERFAMILY SSF82866 79 302 7.98E-43 T 29-03-2018 AM354_RS09225 1cb034362fd26faa6c494b6da7c55cde 322 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 17 302 28.51 T 29-03-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 AM354_RS09225 1cb034362fd26faa6c494b6da7c55cde 322 PRINTS PR01755 Bacterial translocase SecF protein signature 44 59 1.2E-32 T 29-03-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AM354_RS09225 1cb034362fd26faa6c494b6da7c55cde 322 PRINTS PR01755 Bacterial translocase SecF protein signature 159 173 1.2E-32 T 29-03-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AM354_RS09225 1cb034362fd26faa6c494b6da7c55cde 322 PRINTS PR01755 Bacterial translocase SecF protein signature 207 225 1.2E-32 T 29-03-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AM354_RS09225 1cb034362fd26faa6c494b6da7c55cde 322 PRINTS PR01755 Bacterial translocase SecF protein signature 239 254 1.2E-32 T 29-03-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AM354_RS09225 1cb034362fd26faa6c494b6da7c55cde 322 Pfam PF07549 SecD/SecF GG Motif 41 66 1.4E-10 T 29-03-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site AM354_RS09225 1cb034362fd26faa6c494b6da7c55cde 322 Gene3D G3DSA:1.20.1640.10 100 312 4.9E-34 T 29-03-2018 AM354_RS09225 1cb034362fd26faa6c494b6da7c55cde 322 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 45 291 2.4E-89 T 29-03-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 AM354_RS06865 3925017088c9397a29b43fcdc9bc3656 211 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 39 46 - T 29-03-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AM354_RS06865 3925017088c9397a29b43fcdc9bc3656 211 SMART SM00947 27 193 9.8E-64 T 29-03-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AM354_RS06865 3925017088c9397a29b43fcdc9bc3656 211 Gene3D G3DSA:3.40.1050.10 1 208 2.0E-66 T 29-03-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AM354_RS06865 3925017088c9397a29b43fcdc9bc3656 211 SUPERFAMILY SSF53056 1 203 3.01E-65 T 29-03-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AM354_RS06865 3925017088c9397a29b43fcdc9bc3656 211 Pfam PF00484 Carbonic anhydrase 34 189 9.4E-48 T 29-03-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AM354_RS06865 3925017088c9397a29b43fcdc9bc3656 211 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 82 102 - T 29-03-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AM354_RS13575 8a0ba4af3da08a62a0df9e9fd7aa7b6a 284 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 4.3E-10 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS13575 8a0ba4af3da08a62a0df9e9fd7aa7b6a 284 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 4.3E-10 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS13575 8a0ba4af3da08a62a0df9e9fd7aa7b6a 284 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 4.3E-10 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS13575 8a0ba4af3da08a62a0df9e9fd7aa7b6a 284 SUPERFAMILY SSF46785 4 107 2.27E-26 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS13575 8a0ba4af3da08a62a0df9e9fd7aa7b6a 284 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 67 2.0E-21 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS13575 8a0ba4af3da08a62a0df9e9fd7aa7b6a 284 Pfam PF03466 LysR substrate binding domain 94 276 9.0E-20 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS13575 8a0ba4af3da08a62a0df9e9fd7aa7b6a 284 Gene3D G3DSA:3.40.190.10 94 278 3.5E-12 T 29-03-2018 AM354_RS13575 8a0ba4af3da08a62a0df9e9fd7aa7b6a 284 SUPERFAMILY SSF53850 95 276 3.8E-20 T 29-03-2018 AM354_RS13575 8a0ba4af3da08a62a0df9e9fd7aa7b6a 284 Gene3D G3DSA:1.10.10.10 4 89 1.8E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS14205 f0d676db11555247c41349b9dd6d32bc 607 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 5 134 1.1E-25 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AM354_RS14205 f0d676db11555247c41349b9dd6d32bc 607 Pfam PF03144 Elongation factor Tu domain 2 219 289 2.0E-9 T 29-03-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AM354_RS14205 f0d676db11555247c41349b9dd6d32bc 607 Pfam PF00009 Elongation factor Tu GTP binding domain 4 194 3.1E-57 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS14205 f0d676db11555247c41349b9dd6d32bc 607 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 5 599 3.5E-289 T 29-03-2018 IPR006298 GTP-binding protein TypA GO:0005525 AM354_RS14205 f0d676db11555247c41349b9dd6d32bc 607 Gene3D G3DSA:2.40.50.250 483 573 1.3E-37 T 29-03-2018 AM354_RS14205 f0d676db11555247c41349b9dd6d32bc 607 Pfam PF00679 Elongation factor G C-terminus 397 477 1.1E-20 T 29-03-2018 IPR000640 Elongation factor EFG, domain V-like AM354_RS14205 f0d676db11555247c41349b9dd6d32bc 607 PRINTS PR00315 GTP-binding elongation factor signature 87 98 9.6E-15 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS14205 f0d676db11555247c41349b9dd6d32bc 607 PRINTS PR00315 GTP-binding elongation factor signature 123 132 9.6E-15 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS14205 f0d676db11555247c41349b9dd6d32bc 607 PRINTS PR00315 GTP-binding elongation factor signature 71 81 9.6E-15 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS14205 f0d676db11555247c41349b9dd6d32bc 607 PRINTS PR00315 GTP-binding elongation factor signature 51 59 9.6E-15 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS14205 f0d676db11555247c41349b9dd6d32bc 607 PRINTS PR00315 GTP-binding elongation factor signature 7 20 9.6E-15 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS14205 f0d676db11555247c41349b9dd6d32bc 607 Gene3D G3DSA:3.30.70.870 302 400 3.0E-31 T 29-03-2018 AM354_RS14205 f0d676db11555247c41349b9dd6d32bc 607 Gene3D G3DSA:3.40.50.300 68 185 8.3E-30 T 29-03-2018 AM354_RS14205 f0d676db11555247c41349b9dd6d32bc 607 SUPERFAMILY SSF54980 398 512 4.65E-25 T 29-03-2018 IPR035647 EF-G domain III/V-like AM354_RS14205 f0d676db11555247c41349b9dd6d32bc 607 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 44 59 - T 29-03-2018 IPR031157 Tr-type G domain, conserved site AM354_RS14205 f0d676db11555247c41349b9dd6d32bc 607 Gene3D G3DSA:3.40.50.300 2 67 9.2E-11 T 29-03-2018 AM354_RS14205 f0d676db11555247c41349b9dd6d32bc 607 Gene3D G3DSA:3.30.70.240 401 481 2.7E-17 T 29-03-2018 AM354_RS14205 f0d676db11555247c41349b9dd6d32bc 607 SUPERFAMILY SSF50447 151 299 7.95E-31 T 29-03-2018 IPR009000 Translation protein, beta-barrel domain AM354_RS14205 f0d676db11555247c41349b9dd6d32bc 607 Gene3D G3DSA:2.40.30.10 186 300 5.0E-20 T 29-03-2018 AM354_RS14205 f0d676db11555247c41349b9dd6d32bc 607 SUPERFAMILY SSF52540 3 219 5.27E-58 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS14205 f0d676db11555247c41349b9dd6d32bc 607 SUPERFAMILY SSF54980 302 387 5.76E-15 T 29-03-2018 IPR035647 EF-G domain III/V-like AM354_RS03235 da0983431d7fa602906797166ca8a4ba 1018 SUPERFAMILY SSF56176 18 282 1.5E-53 T 29-03-2018 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AM354_RS03235 da0983431d7fa602906797166ca8a4ba 1018 Pfam PF01565 FAD binding domain 52 192 8.0E-37 T 29-03-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AM354_RS03235 da0983431d7fa602906797166ca8a4ba 1018 Gene3D G3DSA:3.30.43.10 6 106 1.8E-18 T 29-03-2018 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 AM354_RS03235 da0983431d7fa602906797166ca8a4ba 1018 Pfam PF02913 FAD linked oxidases, C-terminal domain 281 539 1.3E-64 T 29-03-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 AM354_RS03235 da0983431d7fa602906797166ca8a4ba 1018 SUPERFAMILY SSF46548 655 690 3.66E-8 T 29-03-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AM354_RS03235 da0983431d7fa602906797166ca8a4ba 1018 SUPERFAMILY SSF46548 516 622 3.66E-8 T 29-03-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AM354_RS03235 da0983431d7fa602906797166ca8a4ba 1018 Pfam PF13183 4Fe-4S dicluster domain 576 687 2.5E-12 T 29-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM354_RS03235 da0983431d7fa602906797166ca8a4ba 1018 SUPERFAMILY SSF55103 259 541 1.59E-53 T 29-03-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 AM354_RS03235 da0983431d7fa602906797166ca8a4ba 1018 Gene3D G3DSA:3.30.465.10 107 304 9.3E-43 T 29-03-2018 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AM354_RS03235 da0983431d7fa602906797166ca8a4ba 1018 Gene3D G3DSA:1.10.1060.10 539 703 2.0E-12 T 29-03-2018 AM354_RS03235 da0983431d7fa602906797166ca8a4ba 1018 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 673 684 - T 29-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM354_RS03235 da0983431d7fa602906797166ca8a4ba 1018 Gene3D G3DSA:1.10.45.10 501 538 2.5E-10 T 29-03-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 AM354_RS05885 0c2bcca3f2366bcedc6f0dee26dca482 243 SMART SM00079 22 243 1.9E-4 T 29-03-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 AM354_RS05885 0c2bcca3f2366bcedc6f0dee26dca482 243 Gene3D G3DSA:3.40.190.10 13 132 1.9E-39 T 29-03-2018 AM354_RS05885 0c2bcca3f2366bcedc6f0dee26dca482 243 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 4 241 1.3E-92 T 29-03-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0006810|GO:0030288 AM354_RS05885 0c2bcca3f2366bcedc6f0dee26dca482 243 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 45 58 - T 29-03-2018 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 AM354_RS05885 0c2bcca3f2366bcedc6f0dee26dca482 243 Gene3D G3DSA:3.40.190.10 133 243 1.2E-21 T 29-03-2018 AM354_RS05885 0c2bcca3f2366bcedc6f0dee26dca482 243 SUPERFAMILY SSF53850 1 242 2.97E-74 T 29-03-2018 AM354_RS05885 0c2bcca3f2366bcedc6f0dee26dca482 243 SMART SM00062 22 241 1.4E-87 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM354_RS05885 0c2bcca3f2366bcedc6f0dee26dca482 243 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 23 242 2.0E-73 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM354_RS08215 40c743e90f4b2a73d8126db62190b98e 407 ProSitePatterns PS01125 ROK family signature. 221 248 - T 29-03-2018 IPR000600 ROK family Reactome: R-HSA-4085001 AM354_RS08215 40c743e90f4b2a73d8126db62190b98e 407 SUPERFAMILY SSF46785 15 80 1.44E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS08215 40c743e90f4b2a73d8126db62190b98e 407 Pfam PF01047 MarR family 26 64 6.0E-7 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM354_RS08215 40c743e90f4b2a73d8126db62190b98e 407 SUPERFAMILY SSF53067 89 395 3.48E-55 T 29-03-2018 AM354_RS08215 40c743e90f4b2a73d8126db62190b98e 407 Gene3D G3DSA:3.30.420.40 76 209 2.4E-18 T 29-03-2018 AM354_RS08215 40c743e90f4b2a73d8126db62190b98e 407 Gene3D G3DSA:3.30.420.40 210 403 2.6E-48 T 29-03-2018 AM354_RS08215 40c743e90f4b2a73d8126db62190b98e 407 Pfam PF00480 ROK family 90 393 4.6E-90 T 29-03-2018 IPR000600 ROK family Reactome: R-HSA-4085001 AM354_RS08215 40c743e90f4b2a73d8126db62190b98e 407 Gene3D G3DSA:1.10.10.10 20 75 1.2E-8 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS19085 25b026b2adbcca805aa91fecca1e244d 180 Pfam PF02834 LigT like Phosphoesterase 95 163 2.7E-5 T 29-03-2018 IPR014051 Phosphoesterase, HXTX AM354_RS19085 25b026b2adbcca805aa91fecca1e244d 180 Pfam PF02834 LigT like Phosphoesterase 12 89 2.8E-12 T 29-03-2018 IPR014051 Phosphoesterase, HXTX AM354_RS19085 25b026b2adbcca805aa91fecca1e244d 180 SUPERFAMILY SSF55144 6 174 3.92E-42 T 29-03-2018 IPR009097 Cyclic phosphodiesterase AM354_RS19085 25b026b2adbcca805aa91fecca1e244d 180 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 6 174 1.0E-36 T 29-03-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 AM354_RS19085 25b026b2adbcca805aa91fecca1e244d 180 Gene3D G3DSA:3.90.1140.10 1 180 6.3E-31 T 29-03-2018 AM354_RS19085 25b026b2adbcca805aa91fecca1e244d 180 Hamap MF_01940 RNA 2',3'-cyclic phosphodiesterase [thpR]. 5 174 22.02 T 29-03-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 AM354_RS12065 6cf6381711412b982ecf1044381a9ab8 88 Pfam PF13333 Integrase core domain 30 84 1.2E-21 T 29-03-2018 IPR001584 Integrase, catalytic core GO:0015074 AM354_RS12065 6cf6381711412b982ecf1044381a9ab8 88 Gene3D G3DSA:3.30.420.10 1 88 3.9E-17 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS12065 6cf6381711412b982ecf1044381a9ab8 88 SUPERFAMILY SSF53098 3 79 1.9E-15 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS16290 6cf6381711412b982ecf1044381a9ab8 88 Pfam PF13333 Integrase core domain 30 84 1.2E-21 T 29-03-2018 IPR001584 Integrase, catalytic core GO:0015074 AM354_RS16290 6cf6381711412b982ecf1044381a9ab8 88 Gene3D G3DSA:3.30.420.10 1 88 3.9E-17 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS16290 6cf6381711412b982ecf1044381a9ab8 88 SUPERFAMILY SSF53098 3 79 1.9E-15 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS03285 b076d11b25d0f5b9af1c99c7e0cc1601 345 Gene3D G3DSA:3.40.1570.10 1 183 8.7E-53 T 29-03-2018 AM354_RS03285 b076d11b25d0f5b9af1c99c7e0cc1601 345 SUPERFAMILY SSF144064 4 338 1.28E-131 T 29-03-2018 AM354_RS03285 b076d11b25d0f5b9af1c99c7e0cc1601 345 Gene3D G3DSA:3.40.1570.10 184 344 1.0E-53 T 29-03-2018 AM354_RS03285 b076d11b25d0f5b9af1c99c7e0cc1601 345 Pfam PF05171 Haemin-degrading HemS.ChuX domain 206 338 6.2E-43 T 29-03-2018 IPR007845 Haemin-degrading HemS/ChuX domain GO:0006826 AM354_RS03285 b076d11b25d0f5b9af1c99c7e0cc1601 345 Pfam PF05171 Haemin-degrading HemS.ChuX domain 29 156 5.0E-42 T 29-03-2018 IPR007845 Haemin-degrading HemS/ChuX domain GO:0006826 AM354_RS18675 cf93f277f37f5806de3cd2b3b0effecb 115 SMART SM00422 4 73 2.0E-17 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS18675 cf93f277f37f5806de3cd2b3b0effecb 115 Pfam PF13411 MerR HTH family regulatory protein 4 72 1.4E-11 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS18675 cf93f277f37f5806de3cd2b3b0effecb 115 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 40 60 4.8E-10 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS18675 cf93f277f37f5806de3cd2b3b0effecb 115 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 16 29 4.8E-10 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS18675 cf93f277f37f5806de3cd2b3b0effecb 115 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 5 16 4.8E-10 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS18675 cf93f277f37f5806de3cd2b3b0effecb 115 SUPERFAMILY SSF46955 4 103 6.96E-17 T 29-03-2018 IPR009061 Putative DNA-binding domain AM354_RS18675 cf93f277f37f5806de3cd2b3b0effecb 115 Gene3D G3DSA:1.10.1660.10 1 114 8.6E-18 T 29-03-2018 AM354_RS18675 cf93f277f37f5806de3cd2b3b0effecb 115 TIGRFAM TIGR02054 MerD: mercuric resistence transcriptional repressor protein MerD 1 113 5.1E-49 T 29-03-2018 IPR011797 Mercuric resistence transcriptional repressor protein MerD GO:0003677|GO:0045892|GO:0046689 AM354_RS16395 50b97064340b045538b9d3e9552602fc 525 Pfam PF14785 Maltose transport system permease protein MalF P2 domain 107 271 3.0E-63 T 29-03-2018 IPR029345 Maltose transport system permease protein MalF, P2 domain AM354_RS16395 50b97064340b045538b9d3e9552602fc 525 Gene3D G3DSA:1.10.3720.10 281 523 1.0E-42 T 29-03-2018 AM354_RS16395 50b97064340b045538b9d3e9552602fc 525 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 309 512 1.7E-21 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS16395 50b97064340b045538b9d3e9552602fc 525 Gene3D G3DSA:1.20.58.370 11 102 9.1E-32 T 29-03-2018 IPR035277 Maltose transport system permease protein MalF N-terminal domain AM354_RS16395 50b97064340b045538b9d3e9552602fc 525 SUPERFAMILY SSF160964 22 271 7.19E-83 T 29-03-2018 AM354_RS16395 50b97064340b045538b9d3e9552602fc 525 SUPERFAMILY SSF161098 272 514 1.06E-59 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS16395 50b97064340b045538b9d3e9552602fc 525 Gene3D G3DSA:2.40.430.10 140 206 7.8E-28 T 29-03-2018 AM354_RS16395 50b97064340b045538b9d3e9552602fc 525 Gene3D G3DSA:3.10.650.10 207 279 1.1E-27 T 29-03-2018 AM354_RS16395 50b97064340b045538b9d3e9552602fc 525 Gene3D G3DSA:3.10.650.10 107 139 0.042 T 29-03-2018 AM354_RS00440 3ed09747035af25688271afe44f456c4 890 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 720 740 - T 29-03-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AM354_RS00440 3ed09747035af25688271afe44f456c4 890 Gene3D G3DSA:3.40.50.1970 430 643 7.9E-52 T 29-03-2018 AM354_RS00440 3ed09747035af25688271afe44f456c4 890 SUPERFAMILY SSF53720 6 453 7.98E-85 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM354_RS00440 3ed09747035af25688271afe44f456c4 890 Gene3D G3DSA:3.40.605.10 1 229 1.3E-32 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM354_RS00440 3ed09747035af25688271afe44f456c4 890 Pfam PF00171 Aldehyde dehydrogenase family 5 399 3.7E-28 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM354_RS00440 3ed09747035af25688271afe44f456c4 890 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 632 660 - T 29-03-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AM354_RS00440 3ed09747035af25688271afe44f456c4 890 PIRSF PIRSF000111 1 866 0.0 T 29-03-2018 IPR012079 Bifunctional aldehyde-alcohol dehydrogenase GO:0004022|GO:0006066|GO:0008774|GO:0015976|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396 AM354_RS00440 3ed09747035af25688271afe44f456c4 890 Pfam PF00465 Iron-containing alcohol dehydrogenase 457 851 1.2E-116 T 29-03-2018 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 AM354_RS00440 3ed09747035af25688271afe44f456c4 890 Gene3D G3DSA:3.40.309.10 230 403 2.1E-27 T 29-03-2018 AM354_RS00440 3ed09747035af25688271afe44f456c4 890 SUPERFAMILY SSF56796 451 864 3.79E-120 T 29-03-2018 AM354_RS00440 3ed09747035af25688271afe44f456c4 890 Gene3D G3DSA:1.20.1090.10 644 868 7.1E-62 T 29-03-2018 AM354_RS16560 e22db7a279358a8d41a34b9098bfaa58 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 5.9E-12 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS16560 e22db7a279358a8d41a34b9098bfaa58 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 5.9E-12 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS16560 e22db7a279358a8d41a34b9098bfaa58 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 5.9E-12 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS16560 e22db7a279358a8d41a34b9098bfaa58 249 SUPERFAMILY SSF51735 8 248 2.65E-78 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS16560 e22db7a279358a8d41a34b9098bfaa58 249 Gene3D G3DSA:3.40.50.720 42 249 9.1E-63 T 29-03-2018 AM354_RS16560 e22db7a279358a8d41a34b9098bfaa58 249 Gene3D G3DSA:3.40.50.720 2 41 3.7E-8 T 29-03-2018 AM354_RS16560 e22db7a279358a8d41a34b9098bfaa58 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 3.1E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS16560 e22db7a279358a8d41a34b9098bfaa58 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 3.1E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS16560 e22db7a279358a8d41a34b9098bfaa58 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 3.1E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS16560 e22db7a279358a8d41a34b9098bfaa58 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 3.1E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS16560 e22db7a279358a8d41a34b9098bfaa58 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 3.1E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS16560 e22db7a279358a8d41a34b9098bfaa58 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 3.1E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS16560 e22db7a279358a8d41a34b9098bfaa58 249 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 18 248 2.3E-62 T 29-03-2018 AM354_RS10790 9a244d963495c6f0d3b356d1b6773ce6 204 Pfam PF01810 LysE type translocator 15 203 2.0E-35 T 29-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AM354_RS10790 9a244d963495c6f0d3b356d1b6773ce6 204 PIRSF PIRSF006324 1 204 4.1E-57 T 29-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AM354_RS10975 2b3c78bdccc2b1c0d1817ce8affad4b0 639 Gene3D G3DSA:1.10.530.10 467 639 1.1E-40 T 29-03-2018 AM354_RS10975 2b3c78bdccc2b1c0d1817ce8affad4b0 639 Gene3D G3DSA:1.25.20.10 23 385 4.2E-53 T 29-03-2018 AM354_RS10975 2b3c78bdccc2b1c0d1817ce8affad4b0 639 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 495 523 - T 29-03-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 AM354_RS10975 2b3c78bdccc2b1c0d1817ce8affad4b0 639 Pfam PF01464 Transglycosylase SLT domain 478 588 7.8E-33 T 29-03-2018 IPR008258 Transglycosylase SLT domain 1 AM354_RS10975 2b3c78bdccc2b1c0d1817ce8affad4b0 639 SUPERFAMILY SSF48435 23 471 5.75E-135 T 29-03-2018 IPR016026 Lytic transglycosylase, superhelical U-shaped and linker domain GO:0004553|GO:0042597 AM354_RS10975 2b3c78bdccc2b1c0d1817ce8affad4b0 639 Pfam PF14718 Soluble lytic murein transglycosylase L domain 404 466 1.0E-23 T 29-03-2018 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 AM354_RS10975 2b3c78bdccc2b1c0d1817ce8affad4b0 639 SUPERFAMILY SSF53955 473 632 3.85E-50 T 29-03-2018 IPR023346 Lysozyme-like domain AM354_RS10975 2b3c78bdccc2b1c0d1817ce8affad4b0 639 Gene3D G3DSA:1.10.1240.20 398 466 3.7E-18 T 29-03-2018 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 AM354_RS14050 fd9008563bfe9626fba23c02385beb74 330 TIGRFAM TIGR00669 asnA: aspartate--ammonia ligase 1 330 1.6E-181 T 29-03-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 AM354_RS14050 fd9008563bfe9626fba23c02385beb74 330 PIRSF PIRSF001555 1 329 2.7E-151 T 29-03-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 AM354_RS14050 fd9008563bfe9626fba23c02385beb74 330 Hamap MF_00555 Aspartate--ammonia ligase [asnA]. 1 330 45.314 T 29-03-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 AM354_RS14050 fd9008563bfe9626fba23c02385beb74 330 Pfam PF03590 Aspartate-ammonia ligase 9 244 1.2E-94 T 29-03-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 AM354_RS14050 fd9008563bfe9626fba23c02385beb74 330 Gene3D G3DSA:3.30.930.10 1 315 1.1E-40 T 29-03-2018 AM354_RS14050 fd9008563bfe9626fba23c02385beb74 330 SUPERFAMILY SSF55681 5 323 3.65E-98 T 29-03-2018 AM354_RS16085 c039418685ee9661feed6bbadd31e155 117 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 2 117 26.177 T 29-03-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS16085 c039418685ee9661feed6bbadd31e155 117 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 3 117 4.9E-46 T 29-03-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS16085 c039418685ee9661feed6bbadd31e155 117 Gene3D G3DSA:3.30.420.100 1 117 2.0E-39 T 29-03-2018 AM354_RS16085 c039418685ee9661feed6bbadd31e155 117 SUPERFAMILY SSF53137 3 115 1.33E-53 T 29-03-2018 AM354_RS16085 c039418685ee9661feed6bbadd31e155 117 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 1 117 9.2E-44 T 29-03-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS24355 d93c05cc573d5125eb6f5f1fa03dc94b 311 Gene3D G3DSA:3.40.190.10 134 309 4.1E-24 T 29-03-2018 AM354_RS24355 d93c05cc573d5125eb6f5f1fa03dc94b 311 Pfam PF09084 NMT1/THI5 like 34 244 1.4E-67 T 29-03-2018 IPR015168 SsuA/THI5-like AM354_RS24355 d93c05cc573d5125eb6f5f1fa03dc94b 311 Gene3D G3DSA:3.40.190.10 21 133 1.4E-20 T 29-03-2018 AM354_RS24355 d93c05cc573d5125eb6f5f1fa03dc94b 311 SUPERFAMILY SSF53850 26 306 4.83E-49 T 29-03-2018 AM354_RS03920 ebb5ceb395409c6b0f119e21f94cdcd3 243 Pfam PF02413 Caudovirales tail fibre assembly protein, lambda gpK 144 241 2.5E-26 T 29-03-2018 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly AM354_RS16485 e07502444402b06e373ce8b94c6c9faf 336 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 9 330 53.08 T 29-03-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 AM354_RS16485 e07502444402b06e373ce8b94c6c9faf 336 Gene3D G3DSA:3.20.20.70 11 252 4.5E-43 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS16485 e07502444402b06e373ce8b94c6c9faf 336 SUPERFAMILY SSF51395 13 312 1.8E-72 T 29-03-2018 AM354_RS16485 e07502444402b06e373ce8b94c6c9faf 336 Pfam PF01207 Dihydrouridine synthase (Dus) 17 324 3.5E-94 T 29-03-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AM354_RS16485 e07502444402b06e373ce8b94c6c9faf 336 TIGRFAM TIGR00742 yjbN: tRNA dihydrouridine synthase A 13 329 8.3E-164 T 29-03-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 AM354_RS16485 e07502444402b06e373ce8b94c6c9faf 336 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 95 113 - T 29-03-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 AM354_RS16485 e07502444402b06e373ce8b94c6c9faf 336 PIRSF PIRSF006621 4 330 1.3E-70 T 29-03-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AM354_RS10670 045ca127af25eca7a8f12391d87593dc 398 SUPERFAMILY SSF103473 10 395 7.19E-52 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS10670 045ca127af25eca7a8f12391d87593dc 398 Pfam PF07690 Major Facilitator Superfamily 19 307 1.2E-33 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS10670 045ca127af25eca7a8f12391d87593dc 398 Gene3D G3DSA:1.20.1250.20 3 209 1.0E-21 T 29-03-2018 AM354_RS10670 045ca127af25eca7a8f12391d87593dc 398 TIGRFAM TIGR00899 2A0120: sugar efflux transporter 17 396 1.4E-157 T 29-03-2018 IPR004750 Sugar efflux GO:0008643|GO:0015542|GO:0016021 AM354_RS10670 045ca127af25eca7a8f12391d87593dc 398 Gene3D G3DSA:1.20.1250.20 210 397 1.1E-24 T 29-03-2018 AM354_RS24285 008214478f32f613d3ebc601fda1f548 298 Gene3D G3DSA:1.10.10.10 2 83 1.4E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS24285 008214478f32f613d3ebc601fda1f548 298 Gene3D G3DSA:3.40.190.10 84 174 1.7E-12 T 29-03-2018 AM354_RS24285 008214478f32f613d3ebc601fda1f548 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 2.7E-19 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS24285 008214478f32f613d3ebc601fda1f548 298 SUPERFAMILY SSF46785 3 84 3.76E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS24285 008214478f32f613d3ebc601fda1f548 298 Gene3D G3DSA:3.40.190.10 175 260 2.2E-9 T 29-03-2018 AM354_RS24285 008214478f32f613d3ebc601fda1f548 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 2.0E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS24285 008214478f32f613d3ebc601fda1f548 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 2.0E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS24285 008214478f32f613d3ebc601fda1f548 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 2.0E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS24285 008214478f32f613d3ebc601fda1f548 298 Pfam PF03466 LysR substrate binding domain 89 291 7.3E-29 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS24285 008214478f32f613d3ebc601fda1f548 298 SUPERFAMILY SSF53850 82 292 2.35E-30 T 29-03-2018 AM354_RS16280 4224267b488bbd11702d9ae9a32f2f3d 276 SUPERFAMILY SSF55781 98 273 5.56E-48 T 29-03-2018 IPR029016 GAF domain-like AM354_RS16280 4224267b488bbd11702d9ae9a32f2f3d 276 Gene3D G3DSA:1.10.10.10 9 88 3.0E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS16280 4224267b488bbd11702d9ae9a32f2f3d 276 Pfam PF01614 Bacterial transcriptional regulator 148 270 2.5E-40 T 29-03-2018 IPR014757 Transcription regulator IclR, C-terminal AM354_RS16280 4224267b488bbd11702d9ae9a32f2f3d 276 SUPERFAMILY SSF46785 27 100 5.81E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS16280 4224267b488bbd11702d9ae9a32f2f3d 276 SMART SM00346 27 117 4.2E-33 T 29-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AM354_RS16280 4224267b488bbd11702d9ae9a32f2f3d 276 Gene3D G3DSA:3.30.450.40 92 274 6.4E-48 T 29-03-2018 IPR029016 GAF domain-like AM354_RS16280 4224267b488bbd11702d9ae9a32f2f3d 276 Pfam PF09339 IclR helix-turn-helix domain 29 79 3.3E-18 T 29-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AM354_RS03980 4f7e5dd33dc238ba342d80d7b5b87b2c 437 Gene3D G3DSA:3.90.226.10 66 300 8.9E-24 T 29-03-2018 AM354_RS03980 4f7e5dd33dc238ba342d80d7b5b87b2c 437 SUPERFAMILY SSF52096 227 282 1.55E-25 T 29-03-2018 IPR029045 ClpP/crotonase-like domain AM354_RS03980 4f7e5dd33dc238ba342d80d7b5b87b2c 437 SUPERFAMILY SSF52096 74 196 1.55E-25 T 29-03-2018 IPR029045 ClpP/crotonase-like domain AM354_RS03980 4f7e5dd33dc238ba342d80d7b5b87b2c 437 Pfam PF01343 Peptidase family S49 148 295 3.6E-33 T 29-03-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 AM354_RS08660 6f3b10834b4fff9d0c1f8c094de18fbf 593 Gene3D G3DSA:3.40.50.1220 192 373 2.7E-43 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM354_RS08660 6f3b10834b4fff9d0c1f8c094de18fbf 593 TIGRFAM TIGR01504 glyox_carbo_lig: glyoxylate carboligase 2 589 0.0 T 29-03-2018 IPR006397 Glyoxylate carboligase GO:0009028|GO:0009436 KEGG: 00630+4.1.1.47 AM354_RS08660 6f3b10834b4fff9d0c1f8c094de18fbf 593 Gene3D G3DSA:3.40.50.970 374 582 3.9E-41 T 29-03-2018 AM354_RS08660 6f3b10834b4fff9d0c1f8c094de18fbf 593 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 172 2.2E-52 T 29-03-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AM354_RS08660 6f3b10834b4fff9d0c1f8c094de18fbf 593 SUPERFAMILY SSF52518 369 571 1.09E-51 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS08660 6f3b10834b4fff9d0c1f8c094de18fbf 593 SUPERFAMILY SSF52518 4 184 8.84E-48 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS08660 6f3b10834b4fff9d0c1f8c094de18fbf 593 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 193 329 1.1E-35 T 29-03-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AM354_RS08660 6f3b10834b4fff9d0c1f8c094de18fbf 593 Gene3D G3DSA:3.40.50.970 1 191 9.3E-50 T 29-03-2018 AM354_RS08660 6f3b10834b4fff9d0c1f8c094de18fbf 593 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 393 553 1.1E-34 T 29-03-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AM354_RS08660 6f3b10834b4fff9d0c1f8c094de18fbf 593 SUPERFAMILY SSF52467 157 361 1.0E-47 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM354_RS19545 cd5e0a5086540190dd5ac881aee34f98 327 Pfam PF13407 Periplasmic binding protein domain 28 284 2.3E-46 T 29-03-2018 IPR025997 Periplasmic binding protein AM354_RS19545 cd5e0a5086540190dd5ac881aee34f98 327 Gene3D G3DSA:3.40.50.2300 23 141 6.9E-20 T 29-03-2018 AM354_RS19545 cd5e0a5086540190dd5ac881aee34f98 327 SUPERFAMILY SSF53822 24 300 2.05E-58 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS19545 cd5e0a5086540190dd5ac881aee34f98 327 Gene3D G3DSA:3.40.50.2300 142 297 1.3E-9 T 29-03-2018 AM354_RS00305 623c2cd7d873e10b96b915d88ae2f0c5 137 Gene3D G3DSA:2.170.150.20 2 136 3.8E-55 T 29-03-2018 AM354_RS00305 623c2cd7d873e10b96b915d88ae2f0c5 137 SUPERFAMILY SSF51316 11 131 1.41E-55 T 29-03-2018 IPR011057 Mss4-like AM354_RS00305 623c2cd7d873e10b96b915d88ae2f0c5 137 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 2 129 36.358 T 29-03-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 AM354_RS00305 623c2cd7d873e10b96b915d88ae2f0c5 137 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 13 135 3.5E-58 T 29-03-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 AM354_RS00305 623c2cd7d873e10b96b915d88ae2f0c5 137 Pfam PF01641 SelR domain 13 127 8.4E-52 T 29-03-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 AM354_RS05340 5a0187596aa5bd411b4ad5ff71638dfe 830 Pfam PF13954 PapC N-terminal domain 26 164 2.0E-29 T 29-03-2018 IPR025885 PapC, N-terminal domain GO:0005515 AM354_RS05340 5a0187596aa5bd411b4ad5ff71638dfe 830 SUPERFAMILY SSF141729 24 137 3.01E-18 T 29-03-2018 AM354_RS05340 5a0187596aa5bd411b4ad5ff71638dfe 830 Pfam PF00577 Outer membrane usher protein 183 750 5.4E-164 T 29-03-2018 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 AM354_RS05340 5a0187596aa5bd411b4ad5ff71638dfe 830 Pfam PF13953 PapC C-terminal domain 760 815 2.4E-13 T 29-03-2018 IPR025949 PapC-like, C-terminal domain AM354_RS03940 ed42fc3090cfab52bbc2ce36b56243e7 119 Pfam PF04965 Gene 25-like lysozyme 16 82 1.5E-14 T 29-03-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD AM354_RS03940 ed42fc3090cfab52bbc2ce36b56243e7 119 Gene3D G3DSA:3.10.450.40 5 111 4.4E-23 T 29-03-2018 AM354_RS03940 ed42fc3090cfab52bbc2ce36b56243e7 119 SUPERFAMILY SSF160719 9 106 1.7E-25 T 29-03-2018 AM354_RS15735 37cac9b9bea107742bfc8fc7cb7e3e2d 335 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 3 331 42.763 T 29-03-2018 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 AM354_RS15735 37cac9b9bea107742bfc8fc7cb7e3e2d 335 Pfam PF00579 tRNA synthetases class I (W and Y) 3 285 1.4E-86 T 29-03-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS15735 37cac9b9bea107742bfc8fc7cb7e3e2d 335 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 12 21 - T 29-03-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS15735 37cac9b9bea107742bfc8fc7cb7e3e2d 335 SUPERFAMILY SSF52374 5 330 2.25E-101 T 29-03-2018 AM354_RS15735 37cac9b9bea107742bfc8fc7cb7e3e2d 335 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 3 330 1.7E-118 T 29-03-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AM354_RS15735 37cac9b9bea107742bfc8fc7cb7e3e2d 335 Gene3D G3DSA:1.10.240.10 191 313 3.4E-32 T 29-03-2018 AM354_RS15735 37cac9b9bea107742bfc8fc7cb7e3e2d 335 Gene3D G3DSA:3.40.50.620 1 190 5.8E-76 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS15735 37cac9b9bea107742bfc8fc7cb7e3e2d 335 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 66 85 6.7E-29 T 29-03-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AM354_RS15735 37cac9b9bea107742bfc8fc7cb7e3e2d 335 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 142 163 6.7E-29 T 29-03-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AM354_RS15735 37cac9b9bea107742bfc8fc7cb7e3e2d 335 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 16 32 6.7E-29 T 29-03-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AM354_RS15735 37cac9b9bea107742bfc8fc7cb7e3e2d 335 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 195 205 6.7E-29 T 29-03-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AM354_RS19870 4e010f307d389ef5b7dd2ba37c4c2272 158 TIGRFAM TIGR00854 pts-sorbose: PTS system, mannose/fructose/sorbose family, IIB component 3 150 5.3E-65 T 29-03-2018 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup GO:0005737|GO:0008982|GO:0009401 AM354_RS19870 4e010f307d389ef5b7dd2ba37c4c2272 158 Pfam PF03830 PTS system sorbose subfamily IIB component 4 148 6.2E-52 T 29-03-2018 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 AM354_RS19870 4e010f307d389ef5b7dd2ba37c4c2272 158 Gene3D G3DSA:3.40.35.10 3 157 1.9E-57 T 29-03-2018 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 AM354_RS19870 4e010f307d389ef5b7dd2ba37c4c2272 158 SUPERFAMILY SSF52728 3 153 2.49E-51 T 29-03-2018 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 AM354_RS22720 f47916f186c7851f80c98dc523e1118f 245 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 45 225 4.0E-85 T 29-03-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM354_RS22720 f47916f186c7851f80c98dc523e1118f 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 121 141 2.8E-64 T 29-03-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM354_RS22720 f47916f186c7851f80c98dc523e1118f 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 156 182 2.8E-64 T 29-03-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM354_RS22720 f47916f186c7851f80c98dc523e1118f 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 62 82 2.8E-64 T 29-03-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM354_RS22720 f47916f186c7851f80c98dc523e1118f 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 100 120 2.8E-64 T 29-03-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM354_RS22720 f47916f186c7851f80c98dc523e1118f 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 45 62 2.8E-64 T 29-03-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM354_RS22720 f47916f186c7851f80c98dc523e1118f 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 201 225 2.8E-64 T 29-03-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM354_RS22720 f47916f186c7851f80c98dc523e1118f 245 Pfam PF01578 Cytochrome C assembly protein 14 184 2.7E-33 T 29-03-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 AM354_RS04540 ce605f0c65f7057fa7bb041c5c1724ea 494 ProSitePatterns PS00211 ABC transporters family signature. 397 411 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS04540 ce605f0c65f7057fa7bb041c5c1724ea 494 Gene3D G3DSA:3.40.50.300 3 247 7.2E-54 T 29-03-2018 AM354_RS04540 ce605f0c65f7057fa7bb041c5c1724ea 494 SUPERFAMILY SSF52540 4 231 9.82E-60 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS04540 ce605f0c65f7057fa7bb041c5c1724ea 494 Gene3D G3DSA:3.40.50.300 264 488 1.8E-39 T 29-03-2018 AM354_RS04540 ce605f0c65f7057fa7bb041c5c1724ea 494 SUPERFAMILY SSF52540 268 482 2.34E-48 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS04540 ce605f0c65f7057fa7bb041c5c1724ea 494 SMART SM00382 278 473 1.7E-6 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS04540 ce605f0c65f7057fa7bb041c5c1724ea 494 SMART SM00382 30 218 9.3E-11 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS04540 ce605f0c65f7057fa7bb041c5c1724ea 494 Pfam PF00005 ABC transporter 270 424 6.7E-23 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS04540 ce605f0c65f7057fa7bb041c5c1724ea 494 Pfam PF00005 ABC transporter 21 170 1.2E-33 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS19810 fe466e8e4f8755d515556ad15794291d 225 Gene3D G3DSA:2.60.40.10 23 139 1.9E-40 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS19810 fe466e8e4f8755d515556ad15794291d 225 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 160 217 3.1E-17 T 29-03-2018 IPR016148 Pili assembly chaperone, C-terminal AM354_RS19810 fe466e8e4f8755d515556ad15794291d 225 PRINTS PR00969 Pili chaperone signature 155 170 7.9E-38 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS19810 fe466e8e4f8755d515556ad15794291d 225 PRINTS PR00969 Pili chaperone signature 69 90 7.9E-38 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS19810 fe466e8e4f8755d515556ad15794291d 225 PRINTS PR00969 Pili chaperone signature 120 135 7.9E-38 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS19810 fe466e8e4f8755d515556ad15794291d 225 PRINTS PR00969 Pili chaperone signature 24 33 7.9E-38 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS19810 fe466e8e4f8755d515556ad15794291d 225 PRINTS PR00969 Pili chaperone signature 97 114 7.9E-38 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS19810 fe466e8e4f8755d515556ad15794291d 225 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 96 113 - T 29-03-2018 IPR018046 Pili assembly chaperone, conserved site AM354_RS19810 fe466e8e4f8755d515556ad15794291d 225 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 23 138 3.6E-45 T 29-03-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 AM354_RS19810 fe466e8e4f8755d515556ad15794291d 225 SUPERFAMILY SSF49584 140 221 4.71E-24 T 29-03-2018 IPR016148 Pili assembly chaperone, C-terminal AM354_RS19810 fe466e8e4f8755d515556ad15794291d 225 SUPERFAMILY SSF49354 19 138 7.85E-44 T 29-03-2018 IPR008962 PapD-like AM354_RS19810 fe466e8e4f8755d515556ad15794291d 225 Gene3D G3DSA:2.60.40.10 141 225 1.5E-25 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS00260 31b2273698959340cbcde93be1a5affe 58 Pfam PF10753 Toxin GhoT_OrtT 5 58 4.9E-23 T 29-03-2018 IPR019689 Toxin GhoT/OrtT AM354_RS26165 dd402a14b507f46fa657321d5fb698fa 188 SUPERFAMILY SSF46689 139 182 3.4E-6 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS26165 dd402a14b507f46fa657321d5fb698fa 188 Gene3D G3DSA:1.10.10.60 139 188 1.5E-8 T 29-03-2018 AM354_RS26165 dd402a14b507f46fa657321d5fb698fa 188 Gene3D G3DSA:3.40.50.1390 1 105 5.1E-32 T 29-03-2018 AM354_RS26165 dd402a14b507f46fa657321d5fb698fa 188 Pfam PF00239 Resolvase, N terminal domain 4 137 3.0E-45 T 29-03-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AM354_RS26165 dd402a14b507f46fa657321d5fb698fa 188 ProSitePatterns PS00397 Site-specific recombinases active site. 6 14 - T 29-03-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 AM354_RS26165 dd402a14b507f46fa657321d5fb698fa 188 SUPERFAMILY SSF53041 1 136 3.79E-45 T 29-03-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AM354_RS26165 dd402a14b507f46fa657321d5fb698fa 188 SMART SM00857 3 137 8.1E-61 T 29-03-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AM354_RS26165 dd402a14b507f46fa657321d5fb698fa 188 Gene3D G3DSA:1.20.5.40 106 135 4.5E-18 T 29-03-2018 AM354_RS15520 0465f0e10fb5892c5ae209563ab9c22b 354 SUPERFAMILY SSF56281 36 301 1.4E-25 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS15520 0465f0e10fb5892c5ae209563ab9c22b 354 Pfam PF13483 Beta-lactamase superfamily domain 42 281 3.0E-13 T 29-03-2018 AM354_RS15520 0465f0e10fb5892c5ae209563ab9c22b 354 Gene3D G3DSA:3.60.15.10 1 337 9.3E-49 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS13810 7a6ba3513f26856b26d97c0e5f5b9ff9 552 Gene3D G3DSA:3.30.70.1450 190 279 3.9E-8 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM354_RS13810 7a6ba3513f26856b26d97c0e5f5b9ff9 552 Pfam PF06826 Predicted Permease Membrane Region 11 179 2.6E-44 T 29-03-2018 IPR006512 YidE/YbjL duplication AM354_RS13810 7a6ba3513f26856b26d97c0e5f5b9ff9 552 Pfam PF06826 Predicted Permease Membrane Region 374 546 1.3E-45 T 29-03-2018 IPR006512 YidE/YbjL duplication AM354_RS13810 7a6ba3513f26856b26d97c0e5f5b9ff9 552 Hamap MF_01016 Putative transport protein YidE [yidE]. 1 552 54.72 T 29-03-2018 IPR023018 Transport protein YidE, putative AM354_RS13810 7a6ba3513f26856b26d97c0e5f5b9ff9 552 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 16 166 6.6E-40 T 29-03-2018 IPR006512 YidE/YbjL duplication AM354_RS13810 7a6ba3513f26856b26d97c0e5f5b9ff9 552 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 379 533 1.8E-48 T 29-03-2018 IPR006512 YidE/YbjL duplication AM354_RS13810 7a6ba3513f26856b26d97c0e5f5b9ff9 552 SUPERFAMILY SSF116726 207 271 2.75E-8 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM354_RS13810 7a6ba3513f26856b26d97c0e5f5b9ff9 552 Gene3D G3DSA:3.30.70.1450 280 366 2.3E-14 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM354_RS13810 7a6ba3513f26856b26d97c0e5f5b9ff9 552 SUPERFAMILY SSF116726 287 360 5.49E-13 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM354_RS13810 7a6ba3513f26856b26d97c0e5f5b9ff9 552 Pfam PF02080 TrkA-C domain 293 359 4.3E-11 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM354_RS16415 1c20df215ba9b83ca8bc0b930c542c9b 429 Pfam PF02264 LamB porin 27 429 2.0E-145 T 29-03-2018 IPR003192 Porin, LamB type GO:0006810|GO:0016020 AM354_RS16415 1c20df215ba9b83ca8bc0b930c542c9b 429 Gene3D G3DSA:2.40.170.10 25 429 8.7E-158 T 29-03-2018 IPR003192 Porin, LamB type GO:0006810|GO:0016020 AM354_RS16415 1c20df215ba9b83ca8bc0b930c542c9b 429 SUPERFAMILY SSF56935 25 429 4.58E-147 T 29-03-2018 AM354_RS16415 1c20df215ba9b83ca8bc0b930c542c9b 429 Hamap MF_01301 Maltoporin [lamB]. 3 429 42.524 T 29-03-2018 IPR023738 Maltoporin GO:0009279|GO:0015481|GO:0015768|GO:0042956|GO:0042958 AM354_RS16415 1c20df215ba9b83ca8bc0b930c542c9b 429 ProDom PD008788 PORIN MEMBRANE PRECURSOR SIGNAL MALTOPORIN OUTER ION TRANSMEMBRANE RECEPTOR LAMB 31 424 0.0 T 29-03-2018 IPR003192 Porin, LamB type GO:0006810|GO:0016020 AM354_RS07205 04a84e85bb3e9071555aa80c000e2553 291 Gene3D G3DSA:1.10.1040.10 167 290 1.9E-20 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM354_RS07205 04a84e85bb3e9071555aa80c000e2553 291 PIRSF PIRSF000103 1 291 1.5E-74 T 29-03-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 AM354_RS07205 04a84e85bb3e9071555aa80c000e2553 291 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 158 5.9E-38 T 29-03-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 AM354_RS07205 04a84e85bb3e9071555aa80c000e2553 291 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 164 283 3.2E-14 T 29-03-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 AM354_RS07205 04a84e85bb3e9071555aa80c000e2553 291 SUPERFAMILY SSF51735 1 159 2.27E-40 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS07205 04a84e85bb3e9071555aa80c000e2553 291 SUPERFAMILY SSF48179 164 290 6.23E-23 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM354_RS07205 04a84e85bb3e9071555aa80c000e2553 291 Gene3D G3DSA:3.40.50.720 1 166 1.3E-31 T 29-03-2018 AM354_RS02775 d3e1f8aab364351235737ca6ff6ab8ef 598 Gene3D G3DSA:3.40.50.1700 500 594 1.1E-6 T 29-03-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AM354_RS02775 d3e1f8aab364351235737ca6ff6ab8ef 598 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 280 297 - T 29-03-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 AM354_RS02775 d3e1f8aab364351235737ca6ff6ab8ef 598 SUPERFAMILY SSF52279 405 598 3.27E-7 T 29-03-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AM354_RS02775 d3e1f8aab364351235737ca6ff6ab8ef 598 SUPERFAMILY SSF51445 3 382 8.63E-82 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily AM354_RS02775 d3e1f8aab364351235737ca6ff6ab8ef 598 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 11 368 2.0E-91 T 29-03-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AM354_RS02775 d3e1f8aab364351235737ca6ff6ab8ef 598 Gene3D G3DSA:3.40.50.1700 391 496 7.9E-4 T 29-03-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AM354_RS02775 d3e1f8aab364351235737ca6ff6ab8ef 598 Gene3D G3DSA:3.20.20.300 1 390 1.0E-88 T 29-03-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AM354_RS17205 c2e5264d84dd9eecda76e1f9cc28ebf6 673 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 620 634 2.6E-5 T 29-03-2018 AM354_RS17205 c2e5264d84dd9eecda76e1f9cc28ebf6 673 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 377 399 2.6E-5 T 29-03-2018 AM354_RS17205 c2e5264d84dd9eecda76e1f9cc28ebf6 673 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 377 644 1.0E-25 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS17205 c2e5264d84dd9eecda76e1f9cc28ebf6 673 Gene3D G3DSA:3.20.20.70 3 370 1.3E-109 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS17205 c2e5264d84dd9eecda76e1f9cc28ebf6 673 SUPERFAMILY SSF51395 3 363 1.6E-109 T 29-03-2018 AM354_RS17205 c2e5264d84dd9eecda76e1f9cc28ebf6 673 Gene3D G3DSA:3.50.50.60 480 626 9.1E-39 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS17205 c2e5264d84dd9eecda76e1f9cc28ebf6 673 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 7 332 1.1E-88 T 29-03-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 AM354_RS17205 c2e5264d84dd9eecda76e1f9cc28ebf6 673 Gene3D G3DSA:3.40.50.720 371 479 2.0E-22 T 29-03-2018 AM354_RS17205 c2e5264d84dd9eecda76e1f9cc28ebf6 673 SUPERFAMILY SSF51905 567 651 3.42E-23 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS17205 c2e5264d84dd9eecda76e1f9cc28ebf6 673 SUPERFAMILY SSF51905 461 528 3.42E-23 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS17205 c2e5264d84dd9eecda76e1f9cc28ebf6 673 SUPERFAMILY SSF51971 334 520 7.06E-43 T 29-03-2018 AM354_RS17205 c2e5264d84dd9eecda76e1f9cc28ebf6 673 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 498 516 8.2E-11 T 29-03-2018 AM354_RS17205 c2e5264d84dd9eecda76e1f9cc28ebf6 673 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 378 397 8.2E-11 T 29-03-2018 AM354_RS17205 c2e5264d84dd9eecda76e1f9cc28ebf6 673 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 619 635 8.2E-11 T 29-03-2018 AM354_RS24660 2077b4ec1e3b9a7d0ea14bac6a3ebbba 435 PIRSF PIRSF006444 1 435 4.0E-204 T 29-03-2018 IPR011880 Phenylacetate-CoA ligase GO:0010124|GO:0047475 KEGG: 00360+6.2.1.30|MetaCyc: PWY-1341|MetaCyc: PWY-6318|MetaCyc: PWY-7716 AM354_RS24660 2077b4ec1e3b9a7d0ea14bac6a3ebbba 435 Pfam PF14535 AMP-binding enzyme C-terminal domain 337 433 4.0E-27 T 29-03-2018 IPR028154 AMP-dependent ligase, C-terminal AM354_RS24660 2077b4ec1e3b9a7d0ea14bac6a3ebbba 435 Gene3D G3DSA:3.30.300.30 327 433 3.2E-10 T 29-03-2018 AM354_RS24660 2077b4ec1e3b9a7d0ea14bac6a3ebbba 435 SUPERFAMILY SSF56801 18 396 2.62E-64 T 29-03-2018 AM354_RS24660 2077b4ec1e3b9a7d0ea14bac6a3ebbba 435 Gene3D G3DSA:3.40.50.980 19 97 0.077 T 29-03-2018 AM354_RS24660 2077b4ec1e3b9a7d0ea14bac6a3ebbba 435 Gene3D G3DSA:3.40.50.980 98 256 1.2E-23 T 29-03-2018 AM354_RS24660 2077b4ec1e3b9a7d0ea14bac6a3ebbba 435 Pfam PF00501 AMP-binding enzyme 79 291 7.9E-16 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM354_RS24660 2077b4ec1e3b9a7d0ea14bac6a3ebbba 435 TIGRFAM TIGR02155 PA_CoA_ligase: phenylacetate-CoA ligase 12 433 2.8E-221 T 29-03-2018 IPR011880 Phenylacetate-CoA ligase GO:0010124|GO:0047475 KEGG: 00360+6.2.1.30|MetaCyc: PWY-1341|MetaCyc: PWY-6318|MetaCyc: PWY-7716 AM354_RS26185 e7f6e27637d5e91469fa821f012cd733 74 SUPERFAMILY SSF47598 19 70 8.9E-12 T 29-03-2018 IPR010985 Ribbon-helix-helix GO:0006355 AM354_RS26185 e7f6e27637d5e91469fa821f012cd733 74 Pfam PF09274 ParG 32 69 6.8E-6 T 29-03-2018 IPR015354 DNA partition complex, ParG AM354_RS26185 e7f6e27637d5e91469fa821f012cd733 74 Gene3D G3DSA:1.10.1220.10 1 72 5.0E-12 T 29-03-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AM354_RS23620 979315f1df0c056006d85c8aa7ed73fc 824 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 9 32 1.3E-5 T 29-03-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal AM354_RS23620 979315f1df0c056006d85c8aa7ed73fc 824 TIGRFAM TIGR00509 bisC_fam: molybdopterin guanine dinucleotide-containing S/N-oxide reductases 60 821 0.0 T 29-03-2018 IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase GO:0016491|GO:0055114 AM354_RS23620 979315f1df0c056006d85c8aa7ed73fc 824 Gene3D G3DSA:3.40.228.10 200 457 7.1E-64 T 29-03-2018 AM354_RS23620 979315f1df0c056006d85c8aa7ed73fc 824 Gene3D G3DSA:3.40.228.10 458 519 0.011 T 29-03-2018 AM354_RS23620 979315f1df0c056006d85c8aa7ed73fc 824 Gene3D G3DSA:3.40.228.10 604 662 7.5E-8 T 29-03-2018 AM354_RS23620 979315f1df0c056006d85c8aa7ed73fc 824 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 504 521 - T 29-03-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 AM354_RS23620 979315f1df0c056006d85c8aa7ed73fc 824 Pfam PF01568 Molydopterin dinucleotide binding domain 681 795 3.4E-24 T 29-03-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 AM354_RS23620 979315f1df0c056006d85c8aa7ed73fc 824 SUPERFAMILY SSF50692 673 819 2.03E-39 T 29-03-2018 IPR009010 Aspartate decarboxylase-like domain AM354_RS23620 979315f1df0c056006d85c8aa7ed73fc 824 Gene3D G3DSA:2.40.40.20 663 818 5.4E-31 T 29-03-2018 AM354_RS23620 979315f1df0c056006d85c8aa7ed73fc 824 SUPERFAMILY SSF53706 61 681 1.96E-172 T 29-03-2018 AM354_RS23620 979315f1df0c056006d85c8aa7ed73fc 824 Pfam PF00384 Molybdopterin oxidoreductase 103 561 2.3E-94 T 29-03-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23620 979315f1df0c056006d85c8aa7ed73fc 824 Gene3D G3DSA:3.90.55.10 54 141 1.3E-17 T 29-03-2018 AM354_RS23620 979315f1df0c056006d85c8aa7ed73fc 824 Gene3D G3DSA:3.90.55.10 531 603 1.4E-21 T 29-03-2018 AM354_RS21905 a0ec0496529007181c424e1d3c6d0c34 163 Pfam PF08937 MTH538 TIR-like domain (DUF1863) 3 113 2.5E-24 T 29-03-2018 IPR015032 MTH538 TIR-like domain AM354_RS21905 a0ec0496529007181c424e1d3c6d0c34 163 Gene3D G3DSA:3.40.50.9200 28 160 2.3E-27 T 29-03-2018 AM354_RS21905 a0ec0496529007181c424e1d3c6d0c34 163 SUPERFAMILY SSF52206 39 101 1.96E-10 T 29-03-2018 IPR015032 MTH538 TIR-like domain AM354_RS12970 5a773294f6a31b1d919cf340976184a6 286 SUPERFAMILY SSF103481 36 132 7.32E-8 T 29-03-2018 AM354_RS12970 5a773294f6a31b1d919cf340976184a6 286 TIGRFAM TIGR00950 2A78: carboxylate/amino acid/amine transporter 11 273 2.7E-84 T 29-03-2018 IPR004779 Carboxylate/Amino Acid/Amine Transporter GO:0016021 AM354_RS12970 5a773294f6a31b1d919cf340976184a6 286 SUPERFAMILY SSF103481 198 276 3.14E-8 T 29-03-2018 AM354_RS12970 5a773294f6a31b1d919cf340976184a6 286 Pfam PF00892 EamA-like transporter family 1 129 6.1E-10 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM354_RS12970 5a773294f6a31b1d919cf340976184a6 286 Pfam PF00892 EamA-like transporter family 138 274 7.8E-12 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM354_RS24850 cf08c78f0e336aeb1317f18f99f24348 369 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 14 286 7.5E-51 T 29-03-2018 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AM354_RS24850 cf08c78f0e336aeb1317f18f99f24348 369 Hamap MF_01609 Glutamate--cysteine ligase [gshA]. 1 369 69.709 T 29-03-2018 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AM354_RS24850 cf08c78f0e336aeb1317f18f99f24348 369 TIGRFAM TIGR02050 gshA_cyan_rel: carboxylate-amine ligase, YbdK family 13 292 2.6E-81 T 29-03-2018 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AM354_RS24850 cf08c78f0e336aeb1317f18f99f24348 369 SUPERFAMILY SSF55931 4 364 6.77E-87 T 29-03-2018 AM354_RS01175 2c6732303dd372fd7f8a957875d80050 330 Gene3D G3DSA:3.40.50.300 1 330 9.3E-60 T 29-03-2018 AM354_RS01175 2c6732303dd372fd7f8a957875d80050 330 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 237 323 5.3E-20 T 29-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AM354_RS01175 2c6732303dd372fd7f8a957875d80050 330 Pfam PF00005 ABC transporter 24 187 1.9E-27 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS01175 2c6732303dd372fd7f8a957875d80050 330 SUPERFAMILY SSF52540 3 266 1.98E-53 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS01175 2c6732303dd372fd7f8a957875d80050 330 SMART SM00382 32 235 5.7E-7 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS01175 2c6732303dd372fd7f8a957875d80050 330 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 238 305 1.3E-16 T 29-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AM354_RS08950 37ae6895f614fb1285a6dbca0d1609ad 154 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 17 147 6.4E-55 T 29-03-2018 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 AM354_RS08950 37ae6895f614fb1285a6dbca0d1609ad 154 Pfam PF08334 Type II secretion system (T2SS), protein G 42 147 2.8E-36 T 29-03-2018 IPR013545 Type II secretion system protein G AM354_RS08950 37ae6895f614fb1285a6dbca0d1609ad 154 Pfam PF07963 Prokaryotic N-terminal methylation motif 13 37 1.8E-9 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site AM354_RS08950 37ae6895f614fb1285a6dbca0d1609ad 154 SUPERFAMILY SSF54523 44 148 5.76E-36 T 29-03-2018 AM354_RS08950 37ae6895f614fb1285a6dbca0d1609ad 154 PRINTS PR00813 Bacterial general secretion pathway protein G signature 18 43 3.3E-22 T 29-03-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 AM354_RS08950 37ae6895f614fb1285a6dbca0d1609ad 154 PRINTS PR00813 Bacterial general secretion pathway protein G signature 54 72 3.3E-22 T 29-03-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 AM354_RS08950 37ae6895f614fb1285a6dbca0d1609ad 154 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 16 38 5.9E-9 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site AM354_RS08950 37ae6895f614fb1285a6dbca0d1609ad 154 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 17 37 - T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site AM354_RS08950 37ae6895f614fb1285a6dbca0d1609ad 154 Gene3D G3DSA:3.30.700.10 32 147 2.5E-29 T 29-03-2018 AM354_RS13765 8ce838f2b5805557efa11f1278848b66 344 Gene3D G3DSA:3.40.50.2300 68 174 4.2E-31 T 29-03-2018 AM354_RS13765 8ce838f2b5805557efa11f1278848b66 344 SUPERFAMILY SSF47413 12 71 2.06E-12 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS13765 8ce838f2b5805557efa11f1278848b66 344 SUPERFAMILY SSF53822 70 326 8.83E-57 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS13765 8ce838f2b5805557efa11f1278848b66 344 Gene3D G3DSA:1.10.260.40 12 67 4.7E-15 T 29-03-2018 AM354_RS13765 8ce838f2b5805557efa11f1278848b66 344 SMART SM00354 12 83 3.1E-25 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS13765 8ce838f2b5805557efa11f1278848b66 344 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 73 320 9.1E-21 T 29-03-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain AM354_RS13765 8ce838f2b5805557efa11f1278848b66 344 Pfam PF00356 Bacterial regulatory proteins, lacI family 14 60 2.7E-10 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS13765 8ce838f2b5805557efa11f1278848b66 344 Gene3D G3DSA:3.40.50.2300 175 344 6.6E-33 T 29-03-2018 AM354_RS16650 711f08b1db6bb5abcfb6e646c106fa19 481 TIGRFAM TIGR02119 panF: sodium/pantothenate symporter 4 472 6.2E-234 T 29-03-2018 IPR011849 Sodium/pantothenate symporter GO:0015081|GO:0015233|GO:0015887|GO:0016021|GO:0031402|GO:0071436 AM354_RS16650 711f08b1db6bb5abcfb6e646c106fa19 481 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 36 432 8.7E-109 T 29-03-2018 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 AM354_RS16650 711f08b1db6bb5abcfb6e646c106fa19 481 Pfam PF00474 Sodium:solute symporter family 36 432 7.1E-132 T 29-03-2018 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 AM354_RS16650 711f08b1db6bb5abcfb6e646c106fa19 481 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 155 180 - T 29-03-2018 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 AM354_RS02235 6b5433a15230c48521bf34460f27eb45 309 Gene3D G3DSA:3.90.79.10 163 293 6.8E-11 T 29-03-2018 AM354_RS02235 6b5433a15230c48521bf34460f27eb45 309 Pfam PF01613 Flavin reductase like domain 14 155 3.1E-31 T 29-03-2018 IPR002563 Flavin reductase like domain GO:0010181 AM354_RS02235 6b5433a15230c48521bf34460f27eb45 309 Gene3D G3DSA:2.30.110.10 2 162 5.0E-39 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 AM354_RS02235 6b5433a15230c48521bf34460f27eb45 309 SUPERFAMILY SSF50475 5 158 1.32E-44 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 AM354_RS02235 6b5433a15230c48521bf34460f27eb45 309 SUPERFAMILY SSF55811 167 287 1.26E-6 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 AM354_RS02235 6b5433a15230c48521bf34460f27eb45 309 SMART SM00903 13 156 5.7E-54 T 29-03-2018 IPR002563 Flavin reductase like domain GO:0010181 AM354_RS01480 0d758b33c1bf36c6de58d0a2645120d7 284 Pfam PF01116 Fructose-bisphosphate aldolase class-II 7 282 3.0E-96 T 29-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AM354_RS01480 0d758b33c1bf36c6de58d0a2645120d7 284 SUPERFAMILY SSF51569 3 283 6.01E-98 T 29-03-2018 AM354_RS01480 0d758b33c1bf36c6de58d0a2645120d7 284 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 73 84 - T 29-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AM354_RS01480 0d758b33c1bf36c6de58d0a2645120d7 284 Gene3D G3DSA:3.20.20.70 1 284 8.5E-103 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS01480 0d758b33c1bf36c6de58d0a2645120d7 284 TIGRFAM TIGR01858 tag_bisphos_ald: class II aldolase, tagatose bisphosphate family 4 282 1.1E-145 T 29-03-2018 IPR011288 D-tagatose-bisphosphate aldolase, class II, subunit KbaY/GatY GO:0005975|GO:0008270|GO:0009025 KEGG: 00052+4.1.2.40|MetaCyc: PWY-7077|MetaCyc: PWY-7395 AM354_RS01480 0d758b33c1bf36c6de58d0a2645120d7 284 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 282 9.4E-101 T 29-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AM354_RS01480 0d758b33c1bf36c6de58d0a2645120d7 284 PIRSF PIRSF001359 1 284 8.4E-111 T 29-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AM354_RS01480 0d758b33c1bf36c6de58d0a2645120d7 284 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 131 142 - T 29-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AM354_RS04330 967ac36dc16f8c3e9b66fb6a9e49254b 132 Pfam PF04247 Invasion gene expression up-regulator, SirB 4 126 2.6E-42 T 29-03-2018 IPR007360 Invasion gene expression up-regulator, SirB AM354_RS04330 967ac36dc16f8c3e9b66fb6a9e49254b 132 PIRSF PIRSF005610 1 124 4.1E-26 T 29-03-2018 IPR007360 Invasion gene expression up-regulator, SirB AM354_RS12380 41f691cc95c50b06029b915722bfe1bc 349 Pfam PF03193 RsgA GTPase 98 275 4.0E-54 T 29-03-2018 IPR010914 RsgA GTPase domain GO:0003924|GO:0005525 AM354_RS12380 41f691cc95c50b06029b915722bfe1bc 349 Hamap MF_01820 Putative ribosome biogenesis GTPase RsgA [rsgA]. 40 339 37.076 T 29-03-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 AM354_RS12380 41f691cc95c50b06029b915722bfe1bc 349 Gene3D G3DSA:2.40.50.140 35 100 7.4E-19 T 29-03-2018 AM354_RS12380 41f691cc95c50b06029b915722bfe1bc 349 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 73 333 1.7E-91 T 29-03-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 AM354_RS12380 41f691cc95c50b06029b915722bfe1bc 349 SUPERFAMILY SSF52540 112 339 1.85E-55 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS12380 41f691cc95c50b06029b915722bfe1bc 349 Gene3D G3DSA:3.40.50.300 113 274 8.0E-24 T 29-03-2018 AM354_RS12380 41f691cc95c50b06029b915722bfe1bc 349 Gene3D G3DSA:1.10.40.50 276 344 3.0E-22 T 29-03-2018 AM354_RS22500 9f0717ff72f55c83655e0a4c82d1ba7f 823 Pfam PF13954 PapC N-terminal domain 29 172 3.8E-41 T 29-03-2018 IPR025885 PapC, N-terminal domain GO:0005515 AM354_RS22500 9f0717ff72f55c83655e0a4c82d1ba7f 823 SUPERFAMILY SSF141729 54 163 2.22E-29 T 29-03-2018 AM354_RS22500 9f0717ff72f55c83655e0a4c82d1ba7f 823 Pfam PF13953 PapC C-terminal domain 746 806 1.9E-14 T 29-03-2018 IPR025949 PapC-like, C-terminal domain AM354_RS22500 9f0717ff72f55c83655e0a4c82d1ba7f 823 Pfam PF00577 Outer membrane usher protein 188 736 2.5E-180 T 29-03-2018 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 AM354_RS01585 a25f6560933d3bfec88508710416cd9e 256 SUPERFAMILY SSF52540 3 250 9.12E-62 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS01585 a25f6560933d3bfec88508710416cd9e 256 Pfam PF00005 ABC transporter 21 180 4.9E-29 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS01585 a25f6560933d3bfec88508710416cd9e 256 Gene3D G3DSA:3.40.50.300 1 252 7.3E-54 T 29-03-2018 AM354_RS01585 a25f6560933d3bfec88508710416cd9e 256 SMART SM00382 29 252 9.6E-7 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS01585 a25f6560933d3bfec88508710416cd9e 256 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 231 251 4.1E-8 T 29-03-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AM354_RS05405 6e5aecef79ec6b8763e832035be97837 137 Pfam PF13380 CoA binding domain 14 130 1.7E-40 T 29-03-2018 IPR003781 CoA-binding GO:0048037 AM354_RS05405 6e5aecef79ec6b8763e832035be97837 137 SMART SM00881 10 104 5.3E-27 T 29-03-2018 IPR003781 CoA-binding GO:0048037 AM354_RS05405 6e5aecef79ec6b8763e832035be97837 137 SUPERFAMILY SSF51735 2 135 1.18E-45 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS05405 6e5aecef79ec6b8763e832035be97837 137 Gene3D G3DSA:3.40.50.720 10 134 2.2E-36 T 29-03-2018 AM354_RS04650 e63b181c4c43ef452f111dff0e9f10ad 192 Gene3D G3DSA:1.10.3480.10 1 187 1.3E-35 T 29-03-2018 IPR020945 DMSO/Nitrate reductase chaperone AM354_RS04650 e63b181c4c43ef452f111dff0e9f10ad 192 Pfam PF02613 Nitrate reductase delta subunit 44 147 2.4E-11 T 29-03-2018 IPR020945 DMSO/Nitrate reductase chaperone AM354_RS04650 e63b181c4c43ef452f111dff0e9f10ad 192 PIRSF PIRSF004690 1 186 2.8E-65 T 29-03-2018 IPR026269 Tat proofreading chaperone DmsD-type AM354_RS04650 e63b181c4c43ef452f111dff0e9f10ad 192 SUPERFAMILY SSF89155 2 181 4.19E-46 T 29-03-2018 IPR020945 DMSO/Nitrate reductase chaperone AM354_RS15945 ad14c67325ca8e9687bada6c8165bded 279 SUPERFAMILY SSF54534 50 257 1.71E-63 T 29-03-2018 AM354_RS15945 ad14c67325ca8e9687bada6c8165bded 279 Gene3D G3DSA:3.10.50.40 142 258 2.0E-42 T 29-03-2018 AM354_RS15945 ad14c67325ca8e9687bada6c8165bded 279 Gene3D G3DSA:1.10.287.460 19 141 4.0E-26 T 29-03-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 AM354_RS15945 ad14c67325ca8e9687bada6c8165bded 279 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 40 160 5.5E-36 T 29-03-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 AM354_RS15945 ad14c67325ca8e9687bada6c8165bded 279 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 168 254 3.8E-28 T 29-03-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain AM354_RS09295 92b02e5a172ca230794204b888eca0e1 438 Pfam PF05525 Branched-chain amino acid transport protein 7 428 8.9E-152 T 29-03-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 AM354_RS09295 92b02e5a172ca230794204b888eca0e1 438 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 14 415 4.4E-155 T 29-03-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 AM354_RS17930 5e69668adcf2dfa953628aa1e9c41e4b 358 Pfam PF01548 Transposase 13 151 1.2E-17 T 29-03-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AM354_RS17930 5e69668adcf2dfa953628aa1e9c41e4b 358 Pfam PF02371 Transposase IS116/IS110/IS902 family 239 315 2.1E-11 T 29-03-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AM354_RS12070 5e69668adcf2dfa953628aa1e9c41e4b 358 Pfam PF01548 Transposase 13 151 1.2E-17 T 29-03-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AM354_RS12070 5e69668adcf2dfa953628aa1e9c41e4b 358 Pfam PF02371 Transposase IS116/IS110/IS902 family 239 315 2.1E-11 T 29-03-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AM354_RS01040 5e69668adcf2dfa953628aa1e9c41e4b 358 Pfam PF01548 Transposase 13 151 1.2E-17 T 29-03-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AM354_RS01040 5e69668adcf2dfa953628aa1e9c41e4b 358 Pfam PF02371 Transposase IS116/IS110/IS902 family 239 315 2.1E-11 T 29-03-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AM354_RS16295 5e69668adcf2dfa953628aa1e9c41e4b 358 Pfam PF01548 Transposase 13 151 1.2E-17 T 29-03-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AM354_RS16295 5e69668adcf2dfa953628aa1e9c41e4b 358 Pfam PF02371 Transposase IS116/IS110/IS902 family 239 315 2.1E-11 T 29-03-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AM354_RS09750 5e69668adcf2dfa953628aa1e9c41e4b 358 Pfam PF01548 Transposase 13 151 1.2E-17 T 29-03-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AM354_RS09750 5e69668adcf2dfa953628aa1e9c41e4b 358 Pfam PF02371 Transposase IS116/IS110/IS902 family 239 315 2.1E-11 T 29-03-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AM354_RS02180 e77d2eaf45aabfe30cdae0614dc8166b 307 SUPERFAMILY SSF53850 90 296 6.33E-39 T 29-03-2018 AM354_RS02180 e77d2eaf45aabfe30cdae0614dc8166b 307 Pfam PF03466 LysR substrate binding domain 93 297 3.7E-25 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS02180 e77d2eaf45aabfe30cdae0614dc8166b 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 5.4E-15 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS02180 e77d2eaf45aabfe30cdae0614dc8166b 307 Gene3D G3DSA:3.40.190.10 94 180 2.5E-12 T 29-03-2018 AM354_RS02180 e77d2eaf45aabfe30cdae0614dc8166b 307 SUPERFAMILY SSF46785 3 82 1.28E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS02180 e77d2eaf45aabfe30cdae0614dc8166b 307 Gene3D G3DSA:3.40.190.10 181 269 3.2E-24 T 29-03-2018 AM354_RS02180 e77d2eaf45aabfe30cdae0614dc8166b 307 Gene3D G3DSA:1.10.10.10 1 90 6.5E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS14225 07d4d4e3a1ce7195085e46d206aa44b6 315 SUPERFAMILY SSF55729 2 146 3.38E-27 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS14225 07d4d4e3a1ce7195085e46d206aa44b6 315 Gene3D G3DSA:3.10.129.10 151 300 3.8E-22 T 29-03-2018 AM354_RS14225 07d4d4e3a1ce7195085e46d206aa44b6 315 SUPERFAMILY SSF54637 155 297 1.53E-42 T 29-03-2018 IPR029069 HotDog domain AM354_RS14225 07d4d4e3a1ce7195085e46d206aa44b6 315 TIGRFAM TIGR02447 yiiD_Cterm: putative thioesterase domain 165 298 2.8E-47 T 29-03-2018 IPR012660 Thioesterase, putative AM354_RS14225 07d4d4e3a1ce7195085e46d206aa44b6 315 Pfam PF09500 Putative thioesterase (yiiD_Cterm) 158 297 7.3E-49 T 29-03-2018 IPR012660 Thioesterase, putative AM354_RS14225 07d4d4e3a1ce7195085e46d206aa44b6 315 Pfam PF00583 Acetyltransferase (GNAT) family 21 122 1.0E-13 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS14225 07d4d4e3a1ce7195085e46d206aa44b6 315 Gene3D G3DSA:3.40.630.30 3 150 2.8E-22 T 29-03-2018 AM354_RS01850 9e475ade558e32d59f30cb9a7841ab69 298 SUPERFAMILY SSF103481 38 141 2.88E-15 T 29-03-2018 AM354_RS01850 9e475ade558e32d59f30cb9a7841ab69 298 SUPERFAMILY SSF103481 186 286 1.96E-12 T 29-03-2018 AM354_RS01850 9e475ade558e32d59f30cb9a7841ab69 298 Pfam PF00892 EamA-like transporter family 9 138 3.1E-12 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM354_RS01850 9e475ade558e32d59f30cb9a7841ab69 298 Pfam PF00892 EamA-like transporter family 152 282 7.5E-15 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM354_RS20485 9781efe3f085a425e78e501401683db6 323 Gene3D G3DSA:3.40.1090.10 2 308 3.4E-34 T 29-03-2018 AM354_RS20485 9781efe3f085a425e78e501401683db6 323 Pfam PF01734 Patatin-like phospholipase 8 201 7.9E-24 T 29-03-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 AM354_RS20485 9781efe3f085a425e78e501401683db6 323 SUPERFAMILY SSF52151 5 311 8.63E-30 T 29-03-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AM354_RS04265 f9601a65ceff6f6589d3aef301821c30 233 Gene3D G3DSA:1.10.10.10 4 74 2.0E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS04265 f9601a65ceff6f6589d3aef301821c30 233 SUPERFAMILY SSF53697 95 232 1.23E-18 T 29-03-2018 AM354_RS04265 f9601a65ceff6f6589d3aef301821c30 233 Pfam PF01380 SIS domain 95 194 1.1E-7 T 29-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AM354_RS04265 f9601a65ceff6f6589d3aef301821c30 233 Pfam PF01418 Helix-turn-helix domain, rpiR family 9 67 2.5E-12 T 29-03-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 AM354_RS04265 f9601a65ceff6f6589d3aef301821c30 233 Gene3D G3DSA:3.40.50.10490 75 206 3.1E-16 T 29-03-2018 AM354_RS04265 f9601a65ceff6f6589d3aef301821c30 233 SUPERFAMILY SSF46689 10 72 3.05E-13 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS00895 282f00e762e23134062ebda677460fe2 865 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 5 635 3.0E-259 T 29-03-2018 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 AM354_RS00895 282f00e762e23134062ebda677460fe2 865 SUPERFAMILY SSF57783 744 807 3.4E-19 T 29-03-2018 AM354_RS00895 282f00e762e23134062ebda677460fe2 865 Gene3D G3DSA:3.30.65.10 746 807 1.1E-9 T 29-03-2018 AM354_RS00895 282f00e762e23134062ebda677460fe2 865 Gene3D G3DSA:3.30.65.10 695 745 1.8E-9 T 29-03-2018 AM354_RS00895 282f00e762e23134062ebda677460fe2 865 Gene3D G3DSA:3.30.65.10 582 644 3.7E-11 T 29-03-2018 AM354_RS00895 282f00e762e23134062ebda677460fe2 865 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 309 323 - T 29-03-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 AM354_RS00895 282f00e762e23134062ebda677460fe2 865 Gene3D G3DSA:2.70.20.10 346 467 4.3E-38 T 29-03-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 AM354_RS00895 282f00e762e23134062ebda677460fe2 865 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 597 622 7.4E-6 T 29-03-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 AM354_RS00895 282f00e762e23134062ebda677460fe2 865 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 708 745 5.1E-12 T 29-03-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 AM354_RS00895 282f00e762e23134062ebda677460fe2 865 SUPERFAMILY SSF56712 3 609 4.05E-204 T 29-03-2018 IPR023405 DNA topoisomerase, type IA, core domain AM354_RS00895 282f00e762e23134062ebda677460fe2 865 Pfam PF01131 DNA topoisomerase 157 565 1.5E-127 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AM354_RS00895 282f00e762e23134062ebda677460fe2 865 SUPERFAMILY SSF57783 809 864 2.55E-22 T 29-03-2018 AM354_RS00895 282f00e762e23134062ebda677460fe2 865 Pfam PF08272 Topoisomerase I zinc-ribbon-like 758 793 2.9E-12 T 29-03-2018 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 AM354_RS00895 282f00e762e23134062ebda677460fe2 865 Pfam PF08272 Topoisomerase I zinc-ribbon-like 824 862 4.8E-23 T 29-03-2018 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 AM354_RS00895 282f00e762e23134062ebda677460fe2 865 Gene3D G3DSA:1.10.460.10 468 581 6.9E-26 T 29-03-2018 AM354_RS00895 282f00e762e23134062ebda677460fe2 865 Gene3D G3DSA:1.10.460.10 164 343 2.4E-45 T 29-03-2018 AM354_RS00895 282f00e762e23134062ebda677460fe2 865 SMART SM00437 272 527 1.0E-121 T 29-03-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 AM354_RS00895 282f00e762e23134062ebda677460fe2 865 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 314 323 5.9E-37 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AM354_RS00895 282f00e762e23134062ebda677460fe2 865 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 106 119 5.9E-37 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AM354_RS00895 282f00e762e23134062ebda677460fe2 865 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 490 504 5.9E-37 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AM354_RS00895 282f00e762e23134062ebda677460fe2 865 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 390 406 5.9E-37 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AM354_RS00895 282f00e762e23134062ebda677460fe2 865 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 191 209 5.9E-37 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AM354_RS00895 282f00e762e23134062ebda677460fe2 865 SMART SM00436 133 221 8.7E-48 T 29-03-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 AM354_RS00895 282f00e762e23134062ebda677460fe2 865 Gene3D G3DSA:2.20.25.10 809 863 1.8E-30 T 29-03-2018 AM354_RS00895 282f00e762e23134062ebda677460fe2 865 SUPERFAMILY SSF57783 703 743 1.87E-6 T 29-03-2018 AM354_RS00895 282f00e762e23134062ebda677460fe2 865 Pfam PF01751 Toprim domain 5 142 2.5E-33 T 29-03-2018 IPR006171 TOPRIM domain AM354_RS00895 282f00e762e23134062ebda677460fe2 865 SMART SM00493 3 132 5.1E-33 T 29-03-2018 IPR006171 TOPRIM domain AM354_RS00895 282f00e762e23134062ebda677460fe2 865 Hamap MF_00952 DNA topoisomerase 1 [topA]. 3 723 55.229 T 29-03-2018 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 AM354_RS00895 282f00e762e23134062ebda677460fe2 865 Gene3D G3DSA:3.40.50.140 1 163 2.4E-52 T 29-03-2018 AM354_RS05925 af60ec76feb231b520ff87857f06c26e 377 SUPERFAMILY SSF52540 19 257 6.39E-89 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS05925 af60ec76feb231b520ff87857f06c26e 377 Pfam PF00005 ABC transporter 36 177 5.5E-39 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS05925 af60ec76feb231b520ff87857f06c26e 377 Gene3D G3DSA:2.40.50.140 298 360 6.4E-6 T 29-03-2018 AM354_RS05925 af60ec76feb231b520ff87857f06c26e 377 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 50 375 1.3E-147 T 29-03-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 AM354_RS05925 af60ec76feb231b520ff87857f06c26e 377 SMART SM00382 44 227 7.4E-20 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS05925 af60ec76feb231b520ff87857f06c26e 377 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS05925 af60ec76feb231b520ff87857f06c26e 377 Gene3D G3DSA:3.40.50.300 16 282 8.6E-78 T 29-03-2018 AM354_RS05925 af60ec76feb231b520ff87857f06c26e 377 Pfam PF08402 TOBE domain 295 375 6.2E-19 T 29-03-2018 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 AM354_RS05925 af60ec76feb231b520ff87857f06c26e 377 SUPERFAMILY SSF50331 253 375 3.4E-15 T 29-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal AM354_RS00090 c9597499a2f945948a771d66d8ba30bc 322 TIGRFAM TIGR02208 lipid_A_msbB: lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 11 315 1.6E-134 T 29-03-2018 IPR011921 Lipid A biosynthesis myristoyltransferase GO:0009103|GO:0009276|GO:0016021|GO:0016747 KEGG: 00540+2.3.1.243|KEGG: 00600+2.3.1.24 AM354_RS00090 c9597499a2f945948a771d66d8ba30bc 322 PIRSF PIRSF026649 10 315 2.5E-94 T 29-03-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 AM354_RS00090 c9597499a2f945948a771d66d8ba30bc 322 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 13 306 1.5E-91 T 29-03-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 AM354_RS00090 c9597499a2f945948a771d66d8ba30bc 322 Hamap MF_01944 Lipid A biosynthesis myristoyltransferase [lpxM]. 5 311 52.574 T 29-03-2018 IPR011921 Lipid A biosynthesis myristoyltransferase GO:0009103|GO:0009276|GO:0016021|GO:0016747 KEGG: 00540+2.3.1.243|KEGG: 00600+2.3.1.24 AM354_RS17305 bb1a6051df7ca2fe29e19e00c45c2672 435 SMART SM01118 2 202 2.4E-38 T 29-03-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 AM354_RS17305 bb1a6051df7ca2fe29e19e00c45c2672 435 Gene3D G3DSA:2.40.320.10 1 203 5.4E-45 T 29-03-2018 AM354_RS17305 bb1a6051df7ca2fe29e19e00c45c2672 435 Pfam PF01928 CYTH domain 4 196 1.3E-31 T 29-03-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 AM354_RS17305 bb1a6051df7ca2fe29e19e00c45c2672 435 SUPERFAMILY SSF55154 1 218 1.64E-52 T 29-03-2018 IPR033469 CYTH-like domain Reactome: R-HSA-196819 AM354_RS07355 8f1f0d5ec81f312c358a79186ca4aa69 747 Gene3D G3DSA:3.90.1170.50 190 350 4.9E-20 T 29-03-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AM354_RS07355 8f1f0d5ec81f312c358a79186ca4aa69 747 Gene3D G3DSA:3.30.365.10 27 189 2.7E-25 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS07355 8f1f0d5ec81f312c358a79186ca4aa69 747 SUPERFAMILY SSF56003 9 241 4.53E-25 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS07355 8f1f0d5ec81f312c358a79186ca4aa69 747 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 334 568 2.5E-29 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS07355 8f1f0d5ec81f312c358a79186ca4aa69 747 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 49 183 5.0E-7 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS07355 8f1f0d5ec81f312c358a79186ca4aa69 747 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 618 695 8.5E-13 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS07355 8f1f0d5ec81f312c358a79186ca4aa69 747 Gene3D G3DSA:3.30.365.10 598 744 1.0E-28 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS07355 8f1f0d5ec81f312c358a79186ca4aa69 747 SUPERFAMILY SSF56003 334 741 6.75E-93 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS07355 8f1f0d5ec81f312c358a79186ca4aa69 747 Gene3D G3DSA:3.30.365.10 351 443 4.9E-24 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS07355 8f1f0d5ec81f312c358a79186ca4aa69 747 PIRSF PIRSF036389 1 746 9.6E-191 T 29-03-2018 IPR012368 Oxidoreductase molybdopterin-binding subunit, IorB-related AM354_RS07355 8f1f0d5ec81f312c358a79186ca4aa69 747 Gene3D G3DSA:3.30.365.10 444 597 1.0E-32 T 29-03-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AM354_RS07355 8f1f0d5ec81f312c358a79186ca4aa69 747 SUPERFAMILY SSF54665 214 304 2.86E-9 T 29-03-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AM354_RS07355 8f1f0d5ec81f312c358a79186ca4aa69 747 SMART SM01008 213 308 8.9E-9 T 29-03-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AM354_RS13065 f1d6f9e15406165d47d6b97dfd5d3384 223 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 1 214 5.3E-94 T 29-03-2018 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 AM354_RS13065 f1d6f9e15406165d47d6b97dfd5d3384 223 SUPERFAMILY SSF52540 1 217 2.6E-66 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS13065 f1d6f9e15406165d47d6b97dfd5d3384 223 Gene3D G3DSA:3.40.50.300 1 222 5.7E-62 T 29-03-2018 AM354_RS13065 f1d6f9e15406165d47d6b97dfd5d3384 223 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS13065 f1d6f9e15406165d47d6b97dfd5d3384 223 SMART SM00382 27 214 2.5E-9 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS13065 f1d6f9e15406165d47d6b97dfd5d3384 223 Pfam PF00005 ABC transporter 18 165 8.6E-36 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS16175 fc03f366ed60472b52c3eebb25f22007 169 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 4 160 6.2E-65 T 29-03-2018 IPR023635 Peptide deformylase AM354_RS16175 fc03f366ed60472b52c3eebb25f22007 169 PRINTS PR01576 Peptide deformylase signature 89 100 2.1E-37 T 29-03-2018 IPR023635 Peptide deformylase AM354_RS16175 fc03f366ed60472b52c3eebb25f22007 169 PRINTS PR01576 Peptide deformylase signature 120 149 2.1E-37 T 29-03-2018 IPR023635 Peptide deformylase AM354_RS16175 fc03f366ed60472b52c3eebb25f22007 169 PRINTS PR01576 Peptide deformylase signature 33 62 2.1E-37 T 29-03-2018 IPR023635 Peptide deformylase AM354_RS16175 fc03f366ed60472b52c3eebb25f22007 169 PRINTS PR01576 Peptide deformylase signature 101 119 2.1E-37 T 29-03-2018 IPR023635 Peptide deformylase AM354_RS16175 fc03f366ed60472b52c3eebb25f22007 169 Hamap MF_00163 Peptide deformylase [def]. 2 162 31.283 T 29-03-2018 IPR023635 Peptide deformylase AM354_RS16175 fc03f366ed60472b52c3eebb25f22007 169 Gene3D G3DSA:3.90.45.10 1 169 3.2E-61 T 29-03-2018 IPR023635 Peptide deformylase AM354_RS16175 fc03f366ed60472b52c3eebb25f22007 169 Pfam PF01327 Polypeptide deformylase 4 152 2.9E-49 T 29-03-2018 IPR023635 Peptide deformylase AM354_RS16175 fc03f366ed60472b52c3eebb25f22007 169 PIRSF PIRSF004749 1 168 2.4E-54 T 29-03-2018 IPR023635 Peptide deformylase AM354_RS16175 fc03f366ed60472b52c3eebb25f22007 169 SUPERFAMILY SSF56420 3 164 6.41E-61 T 29-03-2018 IPR023635 Peptide deformylase AM354_RS18655 bc0b65e0c0b9f804348bc6e8dc1af2c6 110 SUPERFAMILY SSF103481 6 103 6.15E-17 T 29-03-2018 AM354_RS18655 bc0b65e0c0b9f804348bc6e8dc1af2c6 110 Pfam PF00893 Small Multidrug Resistance protein 3 94 8.4E-24 T 29-03-2018 IPR000390 Small multidrug resistance protein family GO:0016021 AM354_RS25260 c71071f30ea18c578e1de76c4c070686 129 Gene3D G3DSA:3.40.50.2300 1 129 1.6E-37 T 29-03-2018 AM354_RS25260 c71071f30ea18c578e1de76c4c070686 129 SMART SM00448 6 120 1.7E-35 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS25260 c71071f30ea18c578e1de76c4c070686 129 Pfam PF00072 Response regulator receiver domain 9 120 2.2E-32 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS25260 c71071f30ea18c578e1de76c4c070686 129 SUPERFAMILY SSF52172 5 125 5.69E-37 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS20990 99b45579db56e8681b01aa5b3b03b6d5 259 Hamap MF_01872 tRNA1(Val) (adenine(37)-N6)-methyltransferase [yfiC]. 25 259 55.391 T 29-03-2018 IPR022882 tRNA1(Val) (adenine(37)-N6)-methyltransferase GO:0016430 KEGG: 00340+2.1.1.22 AM354_RS20990 99b45579db56e8681b01aa5b3b03b6d5 259 Gene3D G3DSA:3.40.50.150 23 255 8.9E-35 T 29-03-2018 AM354_RS20990 99b45579db56e8681b01aa5b3b03b6d5 259 Pfam PF05175 Methyltransferase small domain 58 190 3.1E-16 T 29-03-2018 IPR007848 Methyltransferase small domain GO:0008168 AM354_RS20990 99b45579db56e8681b01aa5b3b03b6d5 259 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 133 139 - T 29-03-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AM354_RS20990 99b45579db56e8681b01aa5b3b03b6d5 259 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 130 142 1.3E-5 T 29-03-2018 AM354_RS20990 99b45579db56e8681b01aa5b3b03b6d5 259 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 160 184 1.3E-5 T 29-03-2018 AM354_RS20990 99b45579db56e8681b01aa5b3b03b6d5 259 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 62 76 1.3E-5 T 29-03-2018 AM354_RS20990 99b45579db56e8681b01aa5b3b03b6d5 259 SUPERFAMILY SSF53335 26 201 1.37E-30 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS11405 ef4faf4af38d10f5d28d67f06c5f7622 679 Pfam PF07715 TonB-dependent Receptor Plug Domain 52 145 3.7E-19 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS11405 ef4faf4af38d10f5d28d67f06c5f7622 679 SUPERFAMILY SSF56935 42 679 5.27E-111 T 29-03-2018 AM354_RS11405 ef4faf4af38d10f5d28d67f06c5f7622 679 Gene3D G3DSA:2.40.170.20 158 679 4.5E-66 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS11405 ef4faf4af38d10f5d28d67f06c5f7622 679 Pfam PF00593 TonB dependent receptor 223 678 3.2E-51 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS11405 ef4faf4af38d10f5d28d67f06c5f7622 679 Gene3D G3DSA:2.170.130.10 29 156 2.4E-24 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS11405 ef4faf4af38d10f5d28d67f06c5f7622 679 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 54 679 4.7E-93 T 29-03-2018 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 AM354_RS11405 ef4faf4af38d10f5d28d67f06c5f7622 679 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 662 679 - T 29-03-2018 IPR010917 TonB-dependent receptor, conserved site AM354_RS07570 140b57bf615def148427a9daa625db6c 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 62 7.4E-16 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS07570 140b57bf615def148427a9daa625db6c 297 Gene3D G3DSA:3.40.190.10 182 264 3.7E-9 T 29-03-2018 AM354_RS07570 140b57bf615def148427a9daa625db6c 297 Gene3D G3DSA:1.10.10.10 1 84 2.3E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS07570 140b57bf615def148427a9daa625db6c 297 SUPERFAMILY SSF53850 89 294 1.21E-30 T 29-03-2018 AM354_RS07570 140b57bf615def148427a9daa625db6c 297 Gene3D G3DSA:3.40.190.10 90 181 1.4E-10 T 29-03-2018 AM354_RS07570 140b57bf615def148427a9daa625db6c 297 Pfam PF03466 LysR substrate binding domain 88 293 2.4E-28 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS07570 140b57bf615def148427a9daa625db6c 297 SUPERFAMILY SSF46785 6 88 2.72E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS14325 80ecde893e12c05cd23b1f4ef2521de7 78 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 67 21.265 T 29-03-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS14325 80ecde893e12c05cd23b1f4ef2521de7 78 SUPERFAMILY SSF143800 2 77 1.31E-29 T 29-03-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS14325 80ecde893e12c05cd23b1f4ef2521de7 78 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 57 3.7E-28 T 29-03-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS14325 80ecde893e12c05cd23b1f4ef2521de7 78 Gene3D G3DSA:2.30.170.40 2 75 1.3E-27 T 29-03-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS14325 80ecde893e12c05cd23b1f4ef2521de7 78 Pfam PF00830 Ribosomal L28 family 3 62 4.3E-26 T 29-03-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS23345 3831a273a2815b0ff314e564ba330ee9 138 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 11 129 1.7E-9 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AM354_RS23345 3831a273a2815b0ff314e564ba330ee9 138 SUPERFAMILY SSF54593 11 135 4.3E-26 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS23345 3831a273a2815b0ff314e564ba330ee9 138 Gene3D G3DSA:3.10.180.10 1 138 2.7E-23 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS06510 6eb68d1d8a6a92873fef427fb392fdbf 178 Pfam PF06041 Bacterial protein of unknown function (DUF924) 5 175 4.1E-61 T 29-03-2018 IPR010323 Protein of unknown function DUF924 AM354_RS06510 6eb68d1d8a6a92873fef427fb392fdbf 178 Gene3D G3DSA:1.20.58.320 1 77 8.2E-26 T 29-03-2018 AM354_RS06510 6eb68d1d8a6a92873fef427fb392fdbf 178 Gene3D G3DSA:1.25.40.10 78 178 2.9E-35 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS06510 6eb68d1d8a6a92873fef427fb392fdbf 178 SUPERFAMILY SSF48452 2 174 1.14E-67 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS11230 84ae58a6ef636ae616a6b36bb03f46ea 298 SUPERFAMILY SSF51182 38 107 7.56E-10 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS11230 84ae58a6ef636ae616a6b36bb03f46ea 298 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 260 275 8.2E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM354_RS11230 84ae58a6ef636ae616a6b36bb03f46ea 298 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 275 291 8.2E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM354_RS11230 84ae58a6ef636ae616a6b36bb03f46ea 298 Gene3D G3DSA:2.60.120.280 27 179 2.6E-16 T 29-03-2018 AM354_RS11230 84ae58a6ef636ae616a6b36bb03f46ea 298 SUPERFAMILY SSF46689 246 293 5.82E-10 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS11230 84ae58a6ef636ae616a6b36bb03f46ea 298 Gene3D G3DSA:1.10.10.60 246 296 2.5E-11 T 29-03-2018 AM354_RS11230 84ae58a6ef636ae616a6b36bb03f46ea 298 Pfam PF02311 AraC-like ligand binding domain 40 113 9.4E-7 T 29-03-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AM354_RS11230 84ae58a6ef636ae616a6b36bb03f46ea 298 TIGRFAM TIGR02297 HpaA: 4-hydroxyphenylacetate catabolism regulatory protein HpaA 8 292 2.3E-123 T 29-03-2018 IPR011983 4-hydroxyphenylacetate catabolism regulatory protein HpaA AM354_RS11230 84ae58a6ef636ae616a6b36bb03f46ea 298 SMART SM00342 208 291 1.0E-21 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS11230 84ae58a6ef636ae616a6b36bb03f46ea 298 Gene3D G3DSA:1.10.10.60 182 244 2.5E-5 T 29-03-2018 AM354_RS11230 84ae58a6ef636ae616a6b36bb03f46ea 298 Pfam PF12833 Helix-turn-helix domain 214 292 3.6E-19 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS09915 bfb7143744c2b3bc8c0056dab62c3bee 414 SUPERFAMILY SSF53383 8 392 1.28E-89 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS09915 bfb7143744c2b3bc8c0056dab62c3bee 414 Gene3D G3DSA:3.90.1150.10 286 413 1.4E-34 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS09915 bfb7143744c2b3bc8c0056dab62c3bee 414 Gene3D G3DSA:3.40.640.10 13 285 1.1E-40 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS09915 bfb7143744c2b3bc8c0056dab62c3bee 414 PIRSF PIRSF000524 9 413 2.2E-104 T 29-03-2018 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661 AM354_RS09915 bfb7143744c2b3bc8c0056dab62c3bee 414 Pfam PF00266 Aminotransferase class-V 17 353 3.5E-23 T 29-03-2018 IPR000192 Aminotransferase class V domain AM354_RS10785 7f497f0f8daea7c98cd6c35b0d2d05c3 266 Pfam PF06738 Putative threonine/serine exporter 21 260 3.3E-67 T 29-03-2018 IPR010619 Putative threonine/serine exporter AM354_RS02285 d2f893271cea257381475abcf0bc622f 587 Pfam PF02954 Bacterial regulatory protein, Fis family 548 581 1.0E-11 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AM354_RS02285 d2f893271cea257381475abcf0bc622f 587 SUPERFAMILY SSF46689 544 581 1.73E-8 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS02285 d2f893271cea257381475abcf0bc622f 587 Pfam PF00158 Sigma-54 interaction domain 297 455 5.1E-55 T 29-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AM354_RS02285 d2f893271cea257381475abcf0bc622f 587 Gene3D G3DSA:1.10.10.60 527 581 2.7E-12 T 29-03-2018 AM354_RS02285 d2f893271cea257381475abcf0bc622f 587 SMART SM00382 309 453 3.0E-8 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS02285 d2f893271cea257381475abcf0bc622f 587 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 565 585 4.2E-9 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AM354_RS02285 d2f893271cea257381475abcf0bc622f 587 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 548 565 4.2E-9 T 29-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AM354_RS02285 d2f893271cea257381475abcf0bc622f 587 SUPERFAMILY SSF55781 49 184 8.63E-6 T 29-03-2018 IPR029016 GAF domain-like AM354_RS02285 d2f893271cea257381475abcf0bc622f 587 SUPERFAMILY SSF52540 302 531 4.04E-55 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS02285 d2f893271cea257381475abcf0bc622f 587 Pfam PF01590 GAF domain 72 181 2.4E-5 T 29-03-2018 IPR003018 GAF domain GO:0005515 AM354_RS02285 d2f893271cea257381475abcf0bc622f 587 Gene3D G3DSA:1.10.8.60 460 526 1.5E-12 T 29-03-2018 AM354_RS02285 d2f893271cea257381475abcf0bc622f 587 Gene3D G3DSA:3.40.50.300 294 459 1.3E-21 T 29-03-2018 AM354_RS02285 d2f893271cea257381475abcf0bc622f 587 Gene3D G3DSA:3.30.450.40 13 197 8.7E-9 T 29-03-2018 IPR029016 GAF domain-like AM354_RS10370 f8fd04d9134b7c656edc64b2718fac4b 464 ProSitePatterns PS00218 Amino acid permeases signature. 41 71 - T 29-03-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 AM354_RS10370 f8fd04d9134b7c656edc64b2718fac4b 464 Pfam PF00324 Amino acid permease 16 451 4.6E-105 T 29-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 AM354_RS10370 f8fd04d9134b7c656edc64b2718fac4b 464 PIRSF PIRSF006060 1 459 7.7E-70 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM354_RS14965 68f90a80a5b06b43a0b13f03db32e983 111 Hamap MF_01088 Universal stress protein B [uspB]. 1 107 36.694 T 29-03-2018 IPR019598 Universal stress protein B AM354_RS14965 68f90a80a5b06b43a0b13f03db32e983 111 Pfam PF10625 Universal stress protein B (UspB) 1 107 2.4E-54 T 29-03-2018 IPR019598 Universal stress protein B AM354_RS12525 9886e5c25cd5f1572408205723b282c4 542 Pfam PF13193 AMP-binding enzyme C-terminal domain 447 521 9.1E-12 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain AM354_RS12525 9886e5c25cd5f1572408205723b282c4 542 Pfam PF00501 AMP-binding enzyme 35 438 6.9E-78 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM354_RS12525 9886e5c25cd5f1572408205723b282c4 542 Gene3D G3DSA:3.40.50.980 23 193 2.3E-29 T 29-03-2018 AM354_RS12525 9886e5c25cd5f1572408205723b282c4 542 ProSitePatterns PS00455 Putative AMP-binding domain signature. 188 199 - T 29-03-2018 IPR020845 AMP-binding, conserved site AM354_RS12525 9886e5c25cd5f1572408205723b282c4 542 TIGRFAM TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase 3 528 1.0E-260 T 29-03-2018 IPR011963 2,3-dihydroxybenzoate-AMP ligase GO:0008668|GO:0019290 AM354_RS12525 9886e5c25cd5f1572408205723b282c4 542 Gene3D G3DSA:2.30.38.10 348 431 1.1E-21 T 29-03-2018 AM354_RS12525 9886e5c25cd5f1572408205723b282c4 542 Gene3D G3DSA:3.30.300.30 433 542 3.5E-24 T 29-03-2018 AM354_RS12525 9886e5c25cd5f1572408205723b282c4 542 SUPERFAMILY SSF56801 14 534 1.57E-126 T 29-03-2018 AM354_RS12525 9886e5c25cd5f1572408205723b282c4 542 Gene3D G3DSA:3.40.50.980 194 347 1.8E-28 T 29-03-2018 AM354_RS01790 2b93dc6bc2976328dc74d0651528cfe3 480 SUPERFAMILY SSF55073 315 468 2.35E-38 T 29-03-2018 IPR029787 Nucleotide cyclase AM354_RS01790 2b93dc6bc2976328dc74d0651528cfe3 480 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 306 469 1.6E-42 T 29-03-2018 IPR000160 GGDEF domain AM354_RS01790 2b93dc6bc2976328dc74d0651528cfe3 480 Gene3D G3DSA:3.30.70.270 293 471 9.8E-49 T 29-03-2018 AM354_RS01790 2b93dc6bc2976328dc74d0651528cfe3 480 SMART SM00267 299 470 4.5E-49 T 29-03-2018 IPR000160 GGDEF domain AM354_RS01790 2b93dc6bc2976328dc74d0651528cfe3 480 Pfam PF00990 Diguanylate cyclase, GGDEF domain 310 466 1.6E-37 T 29-03-2018 IPR000160 GGDEF domain AM354_RS12490 92750cd92497b3125fe497bff2fb1ba3 574 Hamap MF_00399 Thiol:disulfide interchange protein DsbD [dsbD]. 1 573 39.879 T 29-03-2018 IPR022910 Thiol:disulphide interchange protein DsbD GO:0047134|GO:0055114 AM354_RS12490 92750cd92497b3125fe497bff2fb1ba3 574 Pfam PF13899 Thioredoxin-like 470 546 2.9E-13 T 29-03-2018 AM354_RS12490 92750cd92497b3125fe497bff2fb1ba3 574 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 179 384 2.4E-21 T 29-03-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 AM354_RS12490 92750cd92497b3125fe497bff2fb1ba3 574 ProSitePatterns PS00194 Thioredoxin family active site. 481 499 - T 29-03-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AM354_RS12490 92750cd92497b3125fe497bff2fb1ba3 574 Pfam PF11412 Disulphide bond corrector protein DsbC 34 143 7.1E-35 T 29-03-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain AM354_RS12490 92750cd92497b3125fe497bff2fb1ba3 574 Gene3D G3DSA:3.40.30.10 447 574 5.4E-19 T 29-03-2018 AM354_RS12490 92750cd92497b3125fe497bff2fb1ba3 574 SUPERFAMILY SSF74863 32 145 6.15E-42 T 29-03-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain AM354_RS12490 92750cd92497b3125fe497bff2fb1ba3 574 SUPERFAMILY SSF52833 457 571 1.55E-23 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS12490 92750cd92497b3125fe497bff2fb1ba3 574 Gene3D G3DSA:2.60.40.1250 25 149 8.6E-41 T 29-03-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain AM354_RS04985 5aaf97dbc5cf32dd2d73976f73f58dcb 266 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 220 235 5.5E-6 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM354_RS04985 5aaf97dbc5cf32dd2d73976f73f58dcb 266 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 235 251 5.5E-6 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM354_RS04985 5aaf97dbc5cf32dd2d73976f73f58dcb 266 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 206 247 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM354_RS04985 5aaf97dbc5cf32dd2d73976f73f58dcb 266 Gene3D G3DSA:2.60.120.10 4 86 6.2E-8 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS04985 5aaf97dbc5cf32dd2d73976f73f58dcb 266 SMART SM00342 169 251 6.3E-29 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS04985 5aaf97dbc5cf32dd2d73976f73f58dcb 266 Gene3D G3DSA:1.10.10.60 125 202 2.8E-12 T 29-03-2018 AM354_RS04985 5aaf97dbc5cf32dd2d73976f73f58dcb 266 Gene3D G3DSA:1.10.10.60 203 253 2.9E-12 T 29-03-2018 AM354_RS04985 5aaf97dbc5cf32dd2d73976f73f58dcb 266 SUPERFAMILY SSF51182 23 176 4.89E-18 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS04985 5aaf97dbc5cf32dd2d73976f73f58dcb 266 SUPERFAMILY SSF46689 206 251 3.58E-9 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS04985 5aaf97dbc5cf32dd2d73976f73f58dcb 266 Pfam PF12833 Helix-turn-helix domain 176 251 4.1E-24 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS04985 5aaf97dbc5cf32dd2d73976f73f58dcb 266 Pfam PF07883 Cupin domain 22 85 4.5E-7 T 29-03-2018 IPR013096 Cupin 2, conserved barrel AM354_RS07425 2d040f058d7a5846e367a1685710b1ec 306 SUPERFAMILY SSF46785 3 85 4.77E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS07425 2d040f058d7a5846e367a1685710b1ec 306 Gene3D G3DSA:1.10.10.10 6 88 5.3E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS07425 2d040f058d7a5846e367a1685710b1ec 306 SUPERFAMILY SSF53850 92 292 9.95E-32 T 29-03-2018 AM354_RS07425 2d040f058d7a5846e367a1685710b1ec 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 2.4E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS07425 2d040f058d7a5846e367a1685710b1ec 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 2.4E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS07425 2d040f058d7a5846e367a1685710b1ec 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 2.4E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS07425 2d040f058d7a5846e367a1685710b1ec 306 Pfam PF03466 LysR substrate binding domain 89 288 4.1E-32 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS07425 2d040f058d7a5846e367a1685710b1ec 306 Gene3D G3DSA:3.40.190.10 92 175 4.3E-11 T 29-03-2018 AM354_RS07425 2d040f058d7a5846e367a1685710b1ec 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 66 3.5E-19 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS07425 2d040f058d7a5846e367a1685710b1ec 306 Gene3D G3DSA:3.40.190.10 176 259 1.2E-15 T 29-03-2018 AM354_RS06185 2b3ab783f98422d50f61d0456a2929d1 362 Gene3D G3DSA:3.90.1150.10 271 351 1.4E-14 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS06185 2b3ab783f98422d50f61d0456a2929d1 362 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 208 217 - T 29-03-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 AM354_RS06185 2b3ab783f98422d50f61d0456a2929d1 362 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 6 352 55.066 T 29-03-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 AM354_RS06185 2b3ab783f98422d50f61d0456a2929d1 362 Pfam PF00155 Aminotransferase class I and II 43 348 8.8E-62 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM354_RS06185 2b3ab783f98422d50f61d0456a2929d1 362 Gene3D G3DSA:3.40.640.10 43 270 8.3E-41 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS06185 2b3ab783f98422d50f61d0456a2929d1 362 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 8 349 1.7E-121 T 29-03-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 AM354_RS06185 2b3ab783f98422d50f61d0456a2929d1 362 SUPERFAMILY SSF53383 6 349 1.6E-79 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS03135 26f5850b8f7335dbdfde0a24e63bbf5f 403 Gene3D G3DSA:1.20.1250.20 200 400 2.4E-15 T 29-03-2018 AM354_RS03135 26f5850b8f7335dbdfde0a24e63bbf5f 403 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 4 382 6.9E-109 T 29-03-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 AM354_RS03135 26f5850b8f7335dbdfde0a24e63bbf5f 403 Pfam PF07690 Major Facilitator Superfamily 14 343 1.3E-39 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS03135 26f5850b8f7335dbdfde0a24e63bbf5f 403 Gene3D G3DSA:1.20.1250.20 3 195 3.2E-30 T 29-03-2018 AM354_RS03135 26f5850b8f7335dbdfde0a24e63bbf5f 403 SUPERFAMILY SSF103473 6 384 1.57E-60 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS13345 3bd86476690aa43adb71728a079d02cc 355 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 3 341 3.3E-160 T 29-03-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 AM354_RS13345 3bd86476690aa43adb71728a079d02cc 355 SUPERFAMILY SSF51735 2 339 2.4E-95 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS13345 3bd86476690aa43adb71728a079d02cc 355 Gene3D G3DSA:3.90.25.10 231 337 1.4E-27 T 29-03-2018 AM354_RS13345 3bd86476690aa43adb71728a079d02cc 355 Gene3D G3DSA:3.40.50.720 2 230 5.0E-62 T 29-03-2018 AM354_RS13345 3bd86476690aa43adb71728a079d02cc 355 Pfam PF16363 GDP-mannose 4,6 dehydratase 5 327 3.1E-98 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS18705 856ffd9f707f9e2377d20ae5e5363260 144 TIGRFAM TIGR02051 MerR: Hg(II)-responsive transcriptional regulator 9 132 1.2E-54 T 29-03-2018 IPR011794 Hg(II)-responsive transcriptional regulator GO:0003677|GO:0006355|GO:0045340|GO:0046689 AM354_RS18705 856ffd9f707f9e2377d20ae5e5363260 144 SUPERFAMILY SSF46955 8 129 3.52E-29 T 29-03-2018 IPR009061 Putative DNA-binding domain AM354_RS18705 856ffd9f707f9e2377d20ae5e5363260 144 Gene3D G3DSA:1.10.1660.10 4 63 1.7E-20 T 29-03-2018 AM354_RS18705 856ffd9f707f9e2377d20ae5e5363260 144 ProSitePatterns PS00552 MerR-type HTH domain signature. 11 33 - T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS18705 856ffd9f707f9e2377d20ae5e5363260 144 Pfam PF09278 MerR, DNA binding 51 113 3.9E-18 T 29-03-2018 IPR015358 Transcription regulator MerR, DNA binding AM354_RS18705 856ffd9f707f9e2377d20ae5e5363260 144 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 9 20 1.1E-24 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS18705 856ffd9f707f9e2377d20ae5e5363260 144 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 20 33 1.1E-24 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS18705 856ffd9f707f9e2377d20ae5e5363260 144 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 44 64 1.1E-24 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS18705 856ffd9f707f9e2377d20ae5e5363260 144 Pfam PF00376 MerR family regulatory protein 9 46 9.5E-11 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS18705 856ffd9f707f9e2377d20ae5e5363260 144 SMART SM00422 8 77 1.1E-27 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS18705 856ffd9f707f9e2377d20ae5e5363260 144 Gene3D G3DSA:1.10.1660.10 64 142 4.5E-20 T 29-03-2018 AM354_RS02570 7b069ee0765c6c6d99f649143854653f 699 SMART SM00382 518 699 1.3E-14 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS02570 7b069ee0765c6c6d99f649143854653f 699 ProSitePatterns PS00211 ABC transporters family signature. 630 644 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS02570 7b069ee0765c6c6d99f649143854653f 699 SUPERFAMILY SSF52540 491 698 8.04E-64 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS02570 7b069ee0765c6c6d99f649143854653f 699 Pfam PF03412 Peptidase C39 family 21 148 2.6E-39 T 29-03-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 AM354_RS02570 7b069ee0765c6c6d99f649143854653f 699 Gene3D G3DSA:3.90.70.10 22 157 3.9E-41 T 29-03-2018 AM354_RS02570 7b069ee0765c6c6d99f649143854653f 699 SUPERFAMILY SSF90123 165 479 3.4E-56 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM354_RS02570 7b069ee0765c6c6d99f649143854653f 699 Gene3D G3DSA:3.40.50.300 488 699 2.3E-58 T 29-03-2018 AM354_RS02570 7b069ee0765c6c6d99f649143854653f 699 Pfam PF00005 ABC transporter 510 658 2.0E-32 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS02570 7b069ee0765c6c6d99f649143854653f 699 Pfam PF00664 ABC transporter transmembrane region 179 443 5.3E-46 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM354_RS02570 7b069ee0765c6c6d99f649143854653f 699 Gene3D G3DSA:1.20.1560.10 158 479 2.9E-38 T 29-03-2018 AM354_RS04240 70ac82192737e4002a665665718ff9c1 371 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 41 365 5.2E-161 T 29-03-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 AM354_RS04240 70ac82192737e4002a665665718ff9c1 371 SUPERFAMILY SSF52540 10 249 3.71E-86 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS04240 70ac82192737e4002a665665718ff9c1 371 Pfam PF00005 ABC transporter 28 167 2.7E-34 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS04240 70ac82192737e4002a665665718ff9c1 371 Pfam PF08402 TOBE domain 285 365 7.5E-9 T 29-03-2018 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 AM354_RS04240 70ac82192737e4002a665665718ff9c1 371 Gene3D G3DSA:3.40.50.300 6 246 7.3E-75 T 29-03-2018 AM354_RS04240 70ac82192737e4002a665665718ff9c1 371 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS04240 70ac82192737e4002a665665718ff9c1 371 SUPERFAMILY SSF50331 243 360 5.67E-7 T 29-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal AM354_RS04240 70ac82192737e4002a665665718ff9c1 371 SMART SM00382 35 218 6.9E-19 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS22990 ca6738fa2ee508f3dffee39f2e1f173a 190 Gene3D G3DSA:3.40.50.1950 2 190 9.5E-52 T 29-03-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 AM354_RS22990 ca6738fa2ee508f3dffee39f2e1f173a 190 SUPERFAMILY SSF52507 2 187 2.09E-58 T 29-03-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 AM354_RS22990 ca6738fa2ee508f3dffee39f2e1f173a 190 Pfam PF02441 Flavoprotein 2 165 1.2E-22 T 29-03-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 AM354_RS22990 ca6738fa2ee508f3dffee39f2e1f173a 190 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 3 186 1.6E-70 T 29-03-2018 IPR004507 Flavin prenyltransferase UbiX/Pad1 AM354_RS22990 ca6738fa2ee508f3dffee39f2e1f173a 190 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 2 188 36.878 T 29-03-2018 IPR004507 Flavin prenyltransferase UbiX/Pad1 AM354_RS06010 57a68ded083dd0a2d881ff76f43a295f 201 SMART SM00014 60 168 2.7E-22 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM354_RS06010 57a68ded083dd0a2d881ff76f43a295f 201 Gene3D G3DSA:1.20.144.10 4 178 1.6E-22 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM354_RS06010 57a68ded083dd0a2d881ff76f43a295f 201 Pfam PF01569 PAP2 superfamily 66 167 4.0E-13 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM354_RS06010 57a68ded083dd0a2d881ff76f43a295f 201 SUPERFAMILY SSF48317 1 175 4.45E-35 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM354_RS05160 ef33a8f3b783a4ea3a0d5319bcd500aa 86 Gene3D G3DSA:3.10.20.30 3 82 6.3E-11 T 29-03-2018 IPR012675 Beta-grasp domain AM354_RS05160 ef33a8f3b783a4ea3a0d5319bcd500aa 86 SUPERFAMILY SSF54292 8 84 8.52E-16 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM354_RS05160 ef33a8f3b783a4ea3a0d5319bcd500aa 86 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 6 83 6.4E-20 T 29-03-2018 AM354_RS07160 cb4de244f7f923ae14a6f3577737ca75 1206 Gene3D G3DSA:3.30.1360.40 792 890 4.1E-26 T 29-03-2018 IPR024946 Arginine repressor C-terminal-like domain Reactome: R-HSA-4615885 AM354_RS07160 cb4de244f7f923ae14a6f3577737ca75 1206 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 449 775 2.9E-99 T 29-03-2018 IPR003778 Carboxyltransferase domain, subdomain A and B AM354_RS07160 cb4de244f7f923ae14a6f3577737ca75 1206 Gene3D G3DSA:3.30.470.20 209 443 9.1E-96 T 29-03-2018 AM354_RS07160 cb4de244f7f923ae14a6f3577737ca75 1206 SUPERFAMILY SSF160467 810 902 1.18E-17 T 29-03-2018 AM354_RS07160 cb4de244f7f923ae14a6f3577737ca75 1206 SUPERFAMILY SSF52440 1 112 3.81E-45 T 29-03-2018 IPR016185 Pre-ATP-grasp domain AM354_RS07160 cb4de244f7f923ae14a6f3577737ca75 1206 Gene3D G3DSA:3.30.1490.20 124 208 2.8E-19 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AM354_RS07160 cb4de244f7f923ae14a6f3577737ca75 1206 Pfam PF00364 Biotin-requiring enzyme 1143 1200 1.5E-15 T 29-03-2018 IPR000089 Biotin/lipoyl attachment AM354_RS07160 cb4de244f7f923ae14a6f3577737ca75 1206 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AM354_RS07160 cb4de244f7f923ae14a6f3577737ca75 1206 SUPERFAMILY SSF50891 632 757 6.83E-33 T 29-03-2018 IPR029000 Cyclophilin-like domain AM354_RS07160 cb4de244f7f923ae14a6f3577737ca75 1206 SUPERFAMILY SSF56059 83 352 5.3E-68 T 29-03-2018 AM354_RS07160 cb4de244f7f923ae14a6f3577737ca75 1206 TIGRFAM TIGR02712 urea_carbox: urea carboxylase 2 1203 0.0 T 29-03-2018 IPR014084 Urea carboxylase KEGG: 00220+3.5.1.54+6.3.4.6|KEGG: 00791+3.5.1.54+6.3.4.6|MetaCyc: PWY-5169|MetaCyc: PWY-5703 AM354_RS07160 cb4de244f7f923ae14a6f3577737ca75 1206 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 1159 1176 - T 29-03-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AM354_RS07160 cb4de244f7f923ae14a6f3577737ca75 1206 SUPERFAMILY SSF51230 1132 1203 2.75E-19 T 29-03-2018 IPR011053 Single hybrid motif AM354_RS07160 cb4de244f7f923ae14a6f3577737ca75 1206 SUPERFAMILY SSF50891 925 1057 9.48E-26 T 29-03-2018 IPR029000 Cyclophilin-like domain AM354_RS07160 cb4de244f7f923ae14a6f3577737ca75 1206 SMART SM00796 808 1041 5.9E-102 T 29-03-2018 IPR003833 Carboxyltransferase domain, subdomain C and D AM354_RS07160 cb4de244f7f923ae14a6f3577737ca75 1206 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 116 322 8.4E-62 T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AM354_RS07160 cb4de244f7f923ae14a6f3577737ca75 1206 Gene3D G3DSA:3.40.50.20 1 123 5.5E-49 T 29-03-2018 AM354_RS07160 cb4de244f7f923ae14a6f3577737ca75 1206 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 472 751 3.7E-89 T 29-03-2018 IPR003778 Carboxyltransferase domain, subdomain A and B AM354_RS07160 cb4de244f7f923ae14a6f3577737ca75 1206 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 1.3E-42 T 29-03-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AM354_RS07160 cb4de244f7f923ae14a6f3577737ca75 1206 Pfam PF02785 Biotin carboxylase C-terminal domain 336 440 5.2E-36 T 29-03-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AM354_RS07160 cb4de244f7f923ae14a6f3577737ca75 1206 SMART SM00797 471 766 4.0E-167 T 29-03-2018 IPR003778 Carboxyltransferase domain, subdomain A and B AM354_RS07160 cb4de244f7f923ae14a6f3577737ca75 1206 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 809 1031 3.9E-46 T 29-03-2018 IPR003833 Carboxyltransferase domain, subdomain C and D AM354_RS07160 cb4de244f7f923ae14a6f3577737ca75 1206 SUPERFAMILY SSF51246 330 443 3.45E-38 T 29-03-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AM354_RS07160 cb4de244f7f923ae14a6f3577737ca75 1206 Gene3D G3DSA:2.40.50.100 1104 1205 1.9E-18 T 29-03-2018 AM354_RS07160 cb4de244f7f923ae14a6f3577737ca75 1206 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 152 166 - T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AM354_RS07160 cb4de244f7f923ae14a6f3577737ca75 1206 Gene3D G3DSA:2.40.100.10 896 1059 3.1E-46 T 29-03-2018 IPR029000 Cyclophilin-like domain AM354_RS07160 cb4de244f7f923ae14a6f3577737ca75 1206 SMART SM00878 336 440 2.2E-58 T 29-03-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AM354_RS06640 5b1e7f81bbf880230e8fc01e5a6ef70d 490 Hamap MF_00804 NAD/NADP-dependent betaine aldehyde dehydrogenase [betB]. 4 490 58.517 T 29-03-2018 IPR011264 Betaine aldehyde dehydrogenase GO:0008802|GO:0019285|GO:0046872 KEGG: 00260+1.2.1.8|MetaCyc: PWY-3722|MetaCyc: PWY-7494 AM354_RS06640 5b1e7f81bbf880230e8fc01e5a6ef70d 490 Gene3D G3DSA:3.40.309.10 268 465 4.0E-72 T 29-03-2018 AM354_RS06640 5b1e7f81bbf880230e8fc01e5a6ef70d 490 Gene3D G3DSA:3.40.605.10 5 267 3.1E-106 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM354_RS06640 5b1e7f81bbf880230e8fc01e5a6ef70d 490 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 279 290 - T 29-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AM354_RS06640 5b1e7f81bbf880230e8fc01e5a6ef70d 490 TIGRFAM TIGR01804 BADH: betaine-aldehyde dehydrogenase 10 477 2.5E-233 T 29-03-2018 IPR011264 Betaine aldehyde dehydrogenase GO:0008802|GO:0019285|GO:0046872 KEGG: 00260+1.2.1.8|MetaCyc: PWY-3722|MetaCyc: PWY-7494 AM354_RS06640 5b1e7f81bbf880230e8fc01e5a6ef70d 490 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 251 258 - T 29-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AM354_RS06640 5b1e7f81bbf880230e8fc01e5a6ef70d 490 SUPERFAMILY SSF53720 7 482 5.63E-172 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM354_RS06640 5b1e7f81bbf880230e8fc01e5a6ef70d 490 Pfam PF00171 Aldehyde dehydrogenase family 15 479 5.3E-180 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM354_RS18140 19638fddf9c6c303ec82baf22323aae4 252 SMART SM00862 25 101 1.0E-11 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS18140 19638fddf9c6c303ec82baf22323aae4 252 Pfam PF00486 Transcriptional regulatory protein, C terminal 26 101 4.2E-12 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS18140 19638fddf9c6c303ec82baf22323aae4 252 Gene3D G3DSA:1.10.10.10 4 108 2.4E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS18140 19638fddf9c6c303ec82baf22323aae4 252 SUPERFAMILY SSF46894 24 101 8.79E-14 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS07225 e670907dff354a1110b179e04494b0c6 147 Gene3D G3DSA:3.40.630.30 1 147 7.2E-26 T 29-03-2018 AM354_RS07225 e670907dff354a1110b179e04494b0c6 147 SUPERFAMILY SSF55729 1 144 8.92E-28 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS07225 e670907dff354a1110b179e04494b0c6 147 Pfam PF13673 Acetyltransferase (GNAT) domain 23 127 1.7E-15 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS05580 234c338326a1079eb8cae91a755182ae 182 Pfam PF05951 Bacterial protein of unknown function (DUF882) 34 182 1.0E-61 T 29-03-2018 IPR010275 Protein of unknown function DUF882 AM354_RS05580 234c338326a1079eb8cae91a755182ae 182 Gene3D G3DSA:3.30.1380.10 55 182 3.5E-24 T 29-03-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AM354_RS05580 234c338326a1079eb8cae91a755182ae 182 SUPERFAMILY SSF55166 68 182 6.02E-33 T 29-03-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AM354_RS07865 9bdfdbbc7a390ec4cbe566dc82524b13 344 Gene3D G3DSA:3.30.2010.10 150 241 9.5E-16 T 29-03-2018 AM354_RS07865 9bdfdbbc7a390ec4cbe566dc82524b13 344 Pfam PF01435 Peptidase family M48 157 339 8.5E-26 T 29-03-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AM354_RS16630 f9719188833d5bf4ef6ab367d7cb171b 113 Gene3D G3DSA:1.10.287.700 19 113 5.4E-5 T 29-03-2018 AM354_RS16870 fdf6857eff2fdd93cea58c36fd1b2cbd 404 Gene3D G3DSA:2.130.10.10 190 308 5.5E-18 T 29-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AM354_RS16870 fdf6857eff2fdd93cea58c36fd1b2cbd 404 SUPERFAMILY SSF51004 48 157 3.79E-42 T 29-03-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain AM354_RS16870 fdf6857eff2fdd93cea58c36fd1b2cbd 404 SUPERFAMILY SSF51004 194 381 3.79E-42 T 29-03-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain AM354_RS16870 fdf6857eff2fdd93cea58c36fd1b2cbd 404 Gene3D G3DSA:2.130.10.10 20 189 2.8E-14 T 29-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AM354_RS16870 fdf6857eff2fdd93cea58c36fd1b2cbd 404 Pfam PF10282 Lactonase, 7-bladed beta-propeller 39 399 3.8E-109 T 29-03-2018 IPR019405 Lactonase, 7-bladed beta propeller AM354_RS16870 fdf6857eff2fdd93cea58c36fd1b2cbd 404 Gene3D G3DSA:2.130.10.10 309 402 5.6E-13 T 29-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AM354_RS16200 3a4b7a91f4805e60cc4c9ea66369fe2c 272 Gene3D G3DSA:3.40.50.10860 1 111 3.3E-35 T 29-03-2018 AM354_RS16200 3a4b7a91f4805e60cc4c9ea66369fe2c 272 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 119 190 8.7E-11 T 29-03-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase AM354_RS16200 3a4b7a91f4805e60cc4c9ea66369fe2c 272 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 1 269 32.526 T 29-03-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 AM354_RS16200 3a4b7a91f4805e60cc4c9ea66369fe2c 272 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 4 270 1.9E-96 T 29-03-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 AM354_RS16200 3a4b7a91f4805e60cc4c9ea66369fe2c 272 SUPERFAMILY SSF51735 102 267 1.22E-43 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS16200 3a4b7a91f4805e60cc4c9ea66369fe2c 272 Gene3D G3DSA:3.40.50.720 112 272 4.4E-33 T 29-03-2018 AM354_RS16200 3a4b7a91f4805e60cc4c9ea66369fe2c 272 SUPERFAMILY SSF53223 2 101 3.05E-30 T 29-03-2018 AM354_RS16200 3a4b7a91f4805e60cc4c9ea66369fe2c 272 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 6 88 8.9E-24 T 29-03-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 AM354_RS12190 fe82c14cfbf7cf1b34e45be88eaa8d82 68 Pfam PF06526 Protein of unknown function (DUF1107) 1 61 1.3E-29 T 29-03-2018 IPR009491 Protein of unknown function DUF1107 AM354_RS12190 fe82c14cfbf7cf1b34e45be88eaa8d82 68 ProDom PD055267 YTFK Y0656 CYTOPLASMIC VP2585 VV0426 ESCHERICHIA S4534 VC2473 YPO3527 COLI 1 65 4.0E-27 T 29-03-2018 IPR009491 Protein of unknown function DUF1107 AM354_RS12190 fe82c14cfbf7cf1b34e45be88eaa8d82 68 Gene3D G3DSA:3.30.1910.10 1 61 7.4E-31 T 29-03-2018 AM354_RS25650 6af006b5aeed05427bf1517c215cfd31 464 Gene3D G3DSA:1.20.1250.20 245 464 3.4E-22 T 29-03-2018 AM354_RS25650 6af006b5aeed05427bf1517c215cfd31 464 Gene3D G3DSA:1.20.1250.20 16 238 4.6E-15 T 29-03-2018 AM354_RS25650 6af006b5aeed05427bf1517c215cfd31 464 TIGRFAM TIGR00886 2A0108: nitrite transporter 37 419 8.9E-109 T 29-03-2018 IPR004737 Nitrate transporter GO:0015112|GO:0015113|GO:0015706|GO:0015707|GO:0016021 AM354_RS25650 6af006b5aeed05427bf1517c215cfd31 464 SUPERFAMILY SSF103473 18 463 1.7E-37 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS25650 6af006b5aeed05427bf1517c215cfd31 464 Pfam PF07690 Major Facilitator Superfamily 46 379 2.6E-14 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS24245 959d57384605f9046c4e4b97358a0b75 311 Pfam PF03466 LysR substrate binding domain 94 298 1.1E-42 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS24245 959d57384605f9046c4e4b97358a0b75 311 SUPERFAMILY SSF53850 95 305 1.63E-44 T 29-03-2018 AM354_RS24245 959d57384605f9046c4e4b97358a0b75 311 Gene3D G3DSA:1.10.10.10 7 88 4.2E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS24245 959d57384605f9046c4e4b97358a0b75 311 SUPERFAMILY SSF46785 12 87 8.11E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS24245 959d57384605f9046c4e4b97358a0b75 311 Gene3D G3DSA:3.40.190.10 184 269 8.3E-28 T 29-03-2018 AM354_RS24245 959d57384605f9046c4e4b97358a0b75 311 Gene3D G3DSA:3.40.190.10 98 183 1.8E-17 T 29-03-2018 AM354_RS24245 959d57384605f9046c4e4b97358a0b75 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 69 5.5E-19 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS24985 274cc7027d9d7eceffe7f7592bb46aab 151 SUPERFAMILY SSF103247 31 148 6.41E-25 T 29-03-2018 IPR005180 Domain of unknown function DUF302 AM354_RS24985 274cc7027d9d7eceffe7f7592bb46aab 151 Pfam PF03625 Domain of unknown function DUF302 60 120 1.5E-14 T 29-03-2018 IPR005180 Domain of unknown function DUF302 AM354_RS24985 274cc7027d9d7eceffe7f7592bb46aab 151 Gene3D G3DSA:3.30.310.70 27 151 3.5E-30 T 29-03-2018 IPR005180 Domain of unknown function DUF302 AM354_RS01830 2e82385278e13cc02851edc7f899899f 157 SUPERFAMILY SSF47741 83 151 1.96E-25 T 29-03-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AM354_RS01830 2e82385278e13cc02851edc7f899899f 157 Pfam PF01799 [2Fe-2S] binding domain 72 144 2.2E-24 T 29-03-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AM354_RS01830 2e82385278e13cc02851edc7f899899f 157 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 38 46 - T 29-03-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AM354_RS01830 2e82385278e13cc02851edc7f899899f 157 Gene3D G3DSA:3.10.20.30 1 73 2.2E-23 T 29-03-2018 IPR012675 Beta-grasp domain AM354_RS01830 2e82385278e13cc02851edc7f899899f 157 SUPERFAMILY SSF54292 2 77 1.11E-21 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM354_RS01830 2e82385278e13cc02851edc7f899899f 157 Gene3D G3DSA:1.10.150.120 74 157 5.6E-28 T 29-03-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AM354_RS01830 2e82385278e13cc02851edc7f899899f 157 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 16 52 1.1E-4 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM354_RS22760 8564e408a86c3d4b1a9fe81ffd780ee1 440 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 17 440 7.5E-145 T 29-03-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) AM354_RS22760 8564e408a86c3d4b1a9fe81ffd780ee1 440 Gene3D G3DSA:2.40.160.60 26 440 9.3E-90 T 29-03-2018 AM354_RS22760 8564e408a86c3d4b1a9fe81ffd780ee1 440 SUPERFAMILY SSF56935 26 440 1.42E-109 T 29-03-2018 AM354_RS22715 ce4355bba8aa53bf684aa485c631fcd4 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 155 174 6.3E-73 T 29-03-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM354_RS22715 ce4355bba8aa53bf684aa485c631fcd4 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 26 47 6.3E-73 T 29-03-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM354_RS22715 ce4355bba8aa53bf684aa485c631fcd4 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 75 98 6.3E-73 T 29-03-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM354_RS22715 ce4355bba8aa53bf684aa485c631fcd4 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 192 215 6.3E-73 T 29-03-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM354_RS22715 ce4355bba8aa53bf684aa485c631fcd4 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 100 118 6.3E-73 T 29-03-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM354_RS22715 ce4355bba8aa53bf684aa485c631fcd4 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 52 69 6.3E-73 T 29-03-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM354_RS22715 ce4355bba8aa53bf684aa485c631fcd4 219 TIGRFAM TIGR01190 ccmB: heme exporter protein CcmB 5 215 1.4E-96 T 29-03-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria AM354_RS22715 ce4355bba8aa53bf684aa485c631fcd4 219 PIRSF PIRSF002764 1 219 1.9E-86 T 29-03-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria AM354_RS22715 ce4355bba8aa53bf684aa485c631fcd4 219 Pfam PF03379 CcmB protein 3 216 1.3E-92 T 29-03-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM354_RS16655 7b1386b836aa09cb92627e33290e7f7a 80 Pfam PF06196 Protein of unknown function (DUF997) 7 77 1.9E-29 T 29-03-2018 IPR010398 Protein of unknown function DUF997 AM354_RS16655 7b1386b836aa09cb92627e33290e7f7a 80 ProDom PD745092 MEMBRANE YHDT SODIUM/PANTOTHENATE TRANSMEMBRANE INNER SYMPORTER Y0210 INTEGRAL PROTEIN-LIKE PM1090 1 79 2.0E-19 T 29-03-2018 IPR010398 Protein of unknown function DUF997 AM354_RS20110 50ae68127690982235e68b4628decb57 454 Pfam PF11892 Domain of unknown function (DUF3412) 333 453 9.7E-57 T 29-03-2018 IPR021826 Domain of unknown function DUF3412 AM354_RS20110 50ae68127690982235e68b4628decb57 454 Pfam PF14793 Domain of unknown function (DUF4478) 4 110 5.3E-47 T 29-03-2018 IPR027820 Domain of unknown function DUF4478 AM354_RS20110 50ae68127690982235e68b4628decb57 454 Pfam PF03641 Possible lysine decarboxylase 190 329 9.4E-34 T 29-03-2018 IPR031100 LOG family AM354_RS20110 50ae68127690982235e68b4628decb57 454 Gene3D G3DSA:3.40.50.450 124 452 4.6E-102 T 29-03-2018 AM354_RS20110 50ae68127690982235e68b4628decb57 454 SUPERFAMILY SSF102405 119 330 1.83E-42 T 29-03-2018 AM354_RS20110 50ae68127690982235e68b4628decb57 454 Gene3D G3DSA:3.30.1850.10 3 111 1.2E-48 T 29-03-2018 IPR027820 Domain of unknown function DUF4478 AM354_RS06780 d1298a12c0ecbc0de8c37a462750c200 176 Pfam PF13302 Acetyltransferase (GNAT) domain 14 156 2.0E-27 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS06780 d1298a12c0ecbc0de8c37a462750c200 176 Gene3D G3DSA:3.40.630.30 1 174 4.6E-25 T 29-03-2018 AM354_RS06780 d1298a12c0ecbc0de8c37a462750c200 176 SUPERFAMILY SSF55729 7 158 6.76E-37 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS00470 b37bdd304596c6ebabfd3bf0fadf5a3c 338 Pfam PF00005 ABC transporter 41 197 6.6E-28 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS00470 b37bdd304596c6ebabfd3bf0fadf5a3c 338 ProSitePatterns PS00211 ABC transporters family signature. 170 184 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS00470 b37bdd304596c6ebabfd3bf0fadf5a3c 338 Gene3D G3DSA:3.40.50.300 17 336 9.8E-75 T 29-03-2018 AM354_RS00470 b37bdd304596c6ebabfd3bf0fadf5a3c 338 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 249 331 2.0E-25 T 29-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AM354_RS00470 b37bdd304596c6ebabfd3bf0fadf5a3c 338 SUPERFAMILY SSF52540 50 318 6.32E-69 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS00470 b37bdd304596c6ebabfd3bf0fadf5a3c 338 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 249 313 3.9E-21 T 29-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AM354_RS00470 b37bdd304596c6ebabfd3bf0fadf5a3c 338 SMART SM00382 49 255 1.8E-12 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS24570 89d46e210f767d3fbf18d469ba648960 672 SUPERFAMILY SSF56935 2 669 3.66E-121 T 29-03-2018 AM354_RS24570 89d46e210f767d3fbf18d469ba648960 672 Gene3D G3DSA:2.170.130.10 9 131 4.7E-25 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS24570 89d46e210f767d3fbf18d469ba648960 672 Pfam PF00593 TonB dependent receptor 200 667 9.7E-55 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS24570 89d46e210f767d3fbf18d469ba648960 672 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 13 666 1.2E-70 T 29-03-2018 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 AM354_RS24570 89d46e210f767d3fbf18d469ba648960 672 Pfam PF07715 TonB-dependent Receptor Plug Domain 11 120 1.0E-23 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS24570 89d46e210f767d3fbf18d469ba648960 672 Gene3D G3DSA:2.40.170.20 132 671 4.6E-80 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS24100 98ae23fdb84e12cb49ade8b888ba1a55 456 Gene3D G3DSA:1.20.1250.20 258 450 2.8E-23 T 29-03-2018 AM354_RS24100 98ae23fdb84e12cb49ade8b888ba1a55 456 Gene3D G3DSA:1.20.1250.20 1 194 5.2E-28 T 29-03-2018 AM354_RS24100 98ae23fdb84e12cb49ade8b888ba1a55 456 PRINTS PR01036 Tetracycline resistance protein TetB signature 203 221 2.2E-7 T 29-03-2018 AM354_RS24100 98ae23fdb84e12cb49ade8b888ba1a55 456 PRINTS PR01036 Tetracycline resistance protein TetB signature 139 163 2.2E-7 T 29-03-2018 AM354_RS24100 98ae23fdb84e12cb49ade8b888ba1a55 456 PRINTS PR01036 Tetracycline resistance protein TetB signature 18 42 2.2E-7 T 29-03-2018 AM354_RS24100 98ae23fdb84e12cb49ade8b888ba1a55 456 PRINTS PR01036 Tetracycline resistance protein TetB signature 109 129 2.2E-7 T 29-03-2018 AM354_RS24100 98ae23fdb84e12cb49ade8b888ba1a55 456 Pfam PF07690 Major Facilitator Superfamily 20 408 2.1E-45 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS24100 98ae23fdb84e12cb49ade8b888ba1a55 456 SUPERFAMILY SSF103473 247 443 1.44E-57 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS24100 98ae23fdb84e12cb49ade8b888ba1a55 456 SUPERFAMILY SSF103473 12 196 1.44E-57 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS16495 e0836a530eb98fd1534dd5f2a277cf10 327 SMART SM00829 11 325 9.0E-21 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AM354_RS16495 e0836a530eb98fd1534dd5f2a277cf10 327 Gene3D G3DSA:3.90.180.10 1 137 7.0E-34 T 29-03-2018 AM354_RS16495 e0836a530eb98fd1534dd5f2a277cf10 327 SUPERFAMILY SSF51735 112 277 6.27E-48 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS16495 e0836a530eb98fd1534dd5f2a277cf10 327 Gene3D G3DSA:3.40.50.720 138 311 1.3E-29 T 29-03-2018 AM354_RS16495 e0836a530eb98fd1534dd5f2a277cf10 327 Pfam PF00107 Zinc-binding dehydrogenase 152 258 8.3E-30 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AM354_RS16495 e0836a530eb98fd1534dd5f2a277cf10 327 SUPERFAMILY SSF50129 9 142 3.46E-34 T 29-03-2018 IPR011032 GroES-like AM354_RS16495 e0836a530eb98fd1534dd5f2a277cf10 327 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 141 162 - T 29-03-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 AM354_RS16495 e0836a530eb98fd1534dd5f2a277cf10 327 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 89 1.7E-9 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AM354_RS03670 939f49fc466b0bc121021a634424c980 480 Pfam PF08244 Glycosyl hydrolases family 32 C terminal 333 473 1.9E-22 T 29-03-2018 IPR013189 Glycosyl hydrolase family 32, C-terminal AM354_RS03670 939f49fc466b0bc121021a634424c980 480 ProSitePatterns PS00609 Glycosyl hydrolases family 32 active site. 28 41 - T 29-03-2018 IPR018053 Glycoside hydrolase, family 32, active site GO:0004553|GO:0005975 KEGG: 00052+3.2.1.26|KEGG: 00500+3.2.1.26 AM354_RS03670 939f49fc466b0bc121021a634424c980 480 Gene3D G3DSA:2.60.120.560 344 480 6.9E-27 T 29-03-2018 AM354_RS03670 939f49fc466b0bc121021a634424c980 480 SUPERFAMILY SSF49899 330 479 2.22E-29 T 29-03-2018 IPR013320 Concanavalin A-like lectin/glucanase domain AM354_RS03670 939f49fc466b0bc121021a634424c980 480 Gene3D G3DSA:2.115.10.20 1 343 1.1E-103 T 29-03-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AM354_RS03670 939f49fc466b0bc121021a634424c980 480 SMART SM00640 28 439 8.2E-149 T 29-03-2018 IPR001362 Glycoside hydrolase, family 32 GO:0004553|GO:0005975 AM354_RS03670 939f49fc466b0bc121021a634424c980 480 TIGRFAM TIGR01322 scrB_fam: sucrose-6-phosphate hydrolase 18 449 8.8E-142 T 29-03-2018 IPR006232 Sucrose-6-phosphate hydrolase GO:0004564|GO:0005737|GO:0005975 KEGG: 00052+3.2.1.26|KEGG: 00500+3.2.1.26 AM354_RS03670 939f49fc466b0bc121021a634424c980 480 SUPERFAMILY SSF75005 21 324 1.88E-110 T 29-03-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AM354_RS03670 939f49fc466b0bc121021a634424c980 480 Pfam PF00251 Glycosyl hydrolases family 32 N-terminal domain 28 328 7.7E-101 T 29-03-2018 IPR013148 Glycosyl hydrolase family 32, N-terminal AM354_RS04190 0d23cef4f7407dafe3e862d9b264270f 232 Pfam PF13302 Acetyltransferase (GNAT) domain 33 172 1.7E-13 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS04190 0d23cef4f7407dafe3e862d9b264270f 232 Gene3D G3DSA:3.40.630.30 12 213 5.4E-27 T 29-03-2018 AM354_RS04190 0d23cef4f7407dafe3e862d9b264270f 232 SUPERFAMILY SSF55729 27 196 1.53E-32 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS03155 2914343cf604f575abec097cb0620acd 458 Pfam PF01554 MatE 17 177 1.7E-38 T 29-03-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AM354_RS03155 2914343cf604f575abec097cb0620acd 458 Pfam PF01554 MatE 245 406 2.6E-36 T 29-03-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AM354_RS03155 2914343cf604f575abec097cb0620acd 458 TIGRFAM TIGR00797 matE: MATE efflux family protein 17 423 1.8E-114 T 29-03-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AM354_RS03155 2914343cf604f575abec097cb0620acd 458 Hamap MF_00400 Multidrug resistance protein MdtK [mdtK]. 1 458 49.654 T 29-03-2018 IPR022913 Multidrug resistance protein MdtK AM354_RS03155 2914343cf604f575abec097cb0620acd 458 PIRSF PIRSF006603 6 457 3.7E-58 T 29-03-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AM354_RS10020 a327fbffaac1f95af3c864bdb7cbe7ef 325 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 135 149 - T 29-03-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS10020 a327fbffaac1f95af3c864bdb7cbe7ef 325 Gene3D G3DSA:3.30.2350.10 83 316 5.4E-69 T 29-03-2018 AM354_RS10020 a327fbffaac1f95af3c864bdb7cbe7ef 325 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 14 312 2.5E-109 T 29-03-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS10020 a327fbffaac1f95af3c864bdb7cbe7ef 325 Pfam PF00849 RNA pseudouridylate synthase 92 241 1.1E-31 T 29-03-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS10020 a327fbffaac1f95af3c864bdb7cbe7ef 325 Pfam PF01479 S4 domain 18 65 1.1E-10 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM354_RS10020 a327fbffaac1f95af3c864bdb7cbe7ef 325 SMART SM00363 18 83 1.7E-10 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM354_RS10020 a327fbffaac1f95af3c864bdb7cbe7ef 325 SUPERFAMILY SSF55174 17 69 3.2E-11 T 29-03-2018 AM354_RS10020 a327fbffaac1f95af3c864bdb7cbe7ef 325 Gene3D G3DSA:3.10.290.10 2 76 2.5E-21 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM354_RS10020 a327fbffaac1f95af3c864bdb7cbe7ef 325 SUPERFAMILY SSF55120 77 321 3.7E-79 T 29-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS10500 bf64095ab38d3004b96f1a676b482e00 204 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 4 186 1.3E-62 T 29-03-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 AM354_RS10500 bf64095ab38d3004b96f1a676b482e00 204 Gene3D G3DSA:3.40.50.300 1 204 5.3E-45 T 29-03-2018 AM354_RS10500 bf64095ab38d3004b96f1a676b482e00 204 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 2 192 27.952 T 29-03-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 AM354_RS10500 bf64095ab38d3004b96f1a676b482e00 204 SUPERFAMILY SSF52540 1 191 1.59E-42 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS10500 bf64095ab38d3004b96f1a676b482e00 204 Pfam PF01121 Dephospho-CoA kinase 3 179 3.0E-72 T 29-03-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 AM354_RS11550 1fadeb31e8b69b74b98c0cfaa4c02a94 376 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 12 371 3.1E-87 T 29-03-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AM354_RS11550 1fadeb31e8b69b74b98c0cfaa4c02a94 376 TIGRFAM TIGR02379 ECA_wecE: TDP-4-keto-6-deoxy-D-glucose transaminase 1 375 2.6E-199 T 29-03-2018 IPR012749 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE-like MetaCyc: PWY-7315 AM354_RS11550 1fadeb31e8b69b74b98c0cfaa4c02a94 376 SUPERFAMILY SSF53383 2 375 1.02E-100 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS11550 1fadeb31e8b69b74b98c0cfaa4c02a94 376 PIRSF PIRSF000390 1 376 3.0E-111 T 29-03-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AM354_RS11550 1fadeb31e8b69b74b98c0cfaa4c02a94 376 Gene3D G3DSA:3.40.640.10 1 242 1.3E-44 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS11550 1fadeb31e8b69b74b98c0cfaa4c02a94 376 Gene3D G3DSA:3.90.1150.10 243 376 8.7E-27 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS16810 d25e2a656ab10cb2e9854b1d95f34d20 484 Pfam PF13454 FAD-NAD(P)-binding 6 157 1.2E-24 T 29-03-2018 AM354_RS16810 d25e2a656ab10cb2e9854b1d95f34d20 484 SUPERFAMILY SSF51905 1 228 4.47E-13 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS16810 d25e2a656ab10cb2e9854b1d95f34d20 484 Gene3D G3DSA:3.50.50.60 1 335 1.5E-9 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS11860 71545d8e8863fe2a915f1ce3de7c0b5d 200 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 106 141 3.9E-8 T 29-03-2018 IPR001451 Hexapeptide repeat AM354_RS11860 71545d8e8863fe2a915f1ce3de7c0b5d 200 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 115 143 - T 29-03-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AM354_RS11860 71545d8e8863fe2a915f1ce3de7c0b5d 200 SUPERFAMILY SSF51161 9 197 1.12E-37 T 29-03-2018 IPR011004 Trimeric LpxA-like AM354_RS11860 71545d8e8863fe2a915f1ce3de7c0b5d 200 Gene3D G3DSA:2.160.10.10 4 196 9.8E-38 T 29-03-2018 AM354_RS11860 71545d8e8863fe2a915f1ce3de7c0b5d 200 TIGRFAM TIGR03308 phn_thr-fam: phosphonate metabolim protein, transferase hexapeptide repeat family 6 199 1.0E-78 T 29-03-2018 IPR017694 Phosphonate metabolim protein, transferase hexapeptide repeat family AM354_RS05690 222a5fe8ee8164365eb15fc15768bde9 348 Gene3D G3DSA:3.40.50.1170 21 231 1.1E-63 T 29-03-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 AM354_RS05690 222a5fe8ee8164365eb15fc15768bde9 348 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 104 114 - T 29-03-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 AM354_RS05690 222a5fe8ee8164365eb15fc15768bde9 348 TIGRFAM TIGR00520 asnASE_II: L-asparaginase, type II 1 348 2.7E-163 T 29-03-2018 IPR004550 L-asparaginase, type II GO:0004067|GO:0006528 AM354_RS05690 222a5fe8ee8164365eb15fc15768bde9 348 PIRSF PIRSF500176 22 348 3.3E-84 T 29-03-2018 AM354_RS05690 222a5fe8ee8164365eb15fc15768bde9 348 Pfam PF00710 Asparaginase, N-terminal 25 216 2.7E-63 T 29-03-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 AM354_RS05690 222a5fe8ee8164365eb15fc15768bde9 348 PRINTS PR00139 Asparaginase/glutaminase family signature 26 37 7.5E-23 T 29-03-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AM354_RS05690 222a5fe8ee8164365eb15fc15768bde9 348 PRINTS PR00139 Asparaginase/glutaminase family signature 103 121 7.5E-23 T 29-03-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AM354_RS05690 222a5fe8ee8164365eb15fc15768bde9 348 PRINTS PR00139 Asparaginase/glutaminase family signature 282 300 7.5E-23 T 29-03-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AM354_RS05690 222a5fe8ee8164365eb15fc15768bde9 348 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 28 36 - T 29-03-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 AM354_RS05690 222a5fe8ee8164365eb15fc15768bde9 348 PIRSF PIRSF001220 20 348 2.3E-94 T 29-03-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AM354_RS05690 222a5fe8ee8164365eb15fc15768bde9 348 SMART SM00870 25 342 7.6E-146 T 29-03-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AM354_RS05690 222a5fe8ee8164365eb15fc15768bde9 348 Gene3D G3DSA:3.40.50.40 235 347 1.3E-31 T 29-03-2018 IPR027473 L-asparaginase, C-terminal domain Reactome: R-HSA-70614 AM354_RS05690 222a5fe8ee8164365eb15fc15768bde9 348 SUPERFAMILY SSF53774 23 347 1.26E-108 T 29-03-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AM354_RS25950 e5cd4046f2983fff1bc8a866e2dcf3a4 189 Pfam PF02659 Putative manganese efflux pump 31 181 3.7E-55 T 29-03-2018 IPR003810 Putative manganese efflux pump AM354_RS25950 e5cd4046f2983fff1bc8a866e2dcf3a4 189 Hamap MF_01521 Probable manganese efflux pump MntP [mntP]. 1 184 25.62 T 29-03-2018 IPR022929 Putative manganese efflux pump MntP AM354_RS09000 e179b3260473aa8a53808fe8fe4f2b5c 163 Pfam PF09619 Type III secretion system lipoprotein chaperone (YscW) 45 146 1.2E-40 T 29-03-2018 AM354_RS16120 3cd53a18d4ef769d1bf46a5701a1a210 129 ProSitePatterns PS00054 Ribosomal protein S11 signature. 97 119 - T 29-03-2018 IPR018102 Ribosomal S11, conserved site AM354_RS16120 3cd53a18d4ef769d1bf46a5701a1a210 129 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 10 126 3.0E-55 T 29-03-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS16120 3cd53a18d4ef769d1bf46a5701a1a210 129 Gene3D G3DSA:3.30.420.80 5 129 6.5E-45 T 29-03-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 AM354_RS16120 3cd53a18d4ef769d1bf46a5701a1a210 129 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 7 129 32.669 T 29-03-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 AM354_RS16120 3cd53a18d4ef769d1bf46a5701a1a210 129 PIRSF PIRSF002131 1 129 5.8E-53 T 29-03-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 AM354_RS16120 3cd53a18d4ef769d1bf46a5701a1a210 129 SUPERFAMILY SSF53137 14 129 6.08E-48 T 29-03-2018 AM354_RS16120 3cd53a18d4ef769d1bf46a5701a1a210 129 Pfam PF00411 Ribosomal protein S11 19 128 1.9E-54 T 29-03-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 AM354_RS24970 7fecdcc499d63402e9d97978efb10326 345 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 29-03-2018 AM354_RS24970 7fecdcc499d63402e9d97978efb10326 345 SUPERFAMILY SSF53822 60 343 3.14E-53 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS24970 7fecdcc499d63402e9d97978efb10326 345 SUPERFAMILY SSF47413 1 52 1.26E-12 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS24970 7fecdcc499d63402e9d97978efb10326 345 SMART SM00354 1 71 1.9E-20 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS24970 7fecdcc499d63402e9d97978efb10326 345 Gene3D G3DSA:3.40.50.2300 56 172 4.9E-27 T 29-03-2018 AM354_RS24970 7fecdcc499d63402e9d97978efb10326 345 Gene3D G3DSA:3.40.50.2300 173 344 1.5E-38 T 29-03-2018 AM354_RS24970 7fecdcc499d63402e9d97978efb10326 345 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 48 7.3E-17 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS24970 7fecdcc499d63402e9d97978efb10326 345 Gene3D G3DSA:1.10.260.40 1 55 1.0E-15 T 29-03-2018 AM354_RS24970 7fecdcc499d63402e9d97978efb10326 345 Pfam PF13377 Periplasmic binding protein-like domain 174 341 2.4E-30 T 29-03-2018 AM354_RS01525 5bbfc907c51709277f0999a3820f6aed 328 SUPERFAMILY SSF51679 5 323 4.97E-62 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AM354_RS01525 5bbfc907c51709277f0999a3820f6aed 328 Pfam PF00296 Luciferase-like monooxygenase 18 294 1.6E-24 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AM354_RS01525 5bbfc907c51709277f0999a3820f6aed 328 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 5 322 7.0E-102 T 29-03-2018 IPR019949 Luciferase family oxidoreductase, group 1 AM354_RS01525 5bbfc907c51709277f0999a3820f6aed 328 Gene3D G3DSA:3.20.20.30 3 327 4.1E-60 T 29-03-2018 AM354_RS01495 c11400b01318a9a3a40f67db0efedaf7 260 Pfam PF05013 N-formylglutamate amidohydrolase 27 234 2.2E-40 T 29-03-2018 IPR007709 N-formylglutamate amidohydrolase AM354_RS01495 c11400b01318a9a3a40f67db0efedaf7 260 SUPERFAMILY SSF53187 11 256 3.45E-73 T 29-03-2018 AM354_RS01495 c11400b01318a9a3a40f67db0efedaf7 260 PIRSF PIRSF029730 6 259 4.0E-89 T 29-03-2018 IPR011227 Uncharacterised conserved protein UCP029730 AM354_RS01495 c11400b01318a9a3a40f67db0efedaf7 260 Gene3D G3DSA:3.40.630.40 17 260 5.5E-60 T 29-03-2018 AM354_RS24855 2207fb75c8bcd90d568adb8895d8e2f5 108 SUPERFAMILY SSF46785 3 105 3.22E-28 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS24855 2207fb75c8bcd90d568adb8895d8e2f5 108 SMART SM00418 8 86 9.4E-28 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS24855 2207fb75c8bcd90d568adb8895d8e2f5 108 Gene3D G3DSA:1.10.10.10 3 106 7.6E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS24855 2207fb75c8bcd90d568adb8895d8e2f5 108 Pfam PF01022 Bacterial regulatory protein, arsR family 15 60 3.3E-14 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS24855 2207fb75c8bcd90d568adb8895d8e2f5 108 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 10 25 8.6E-24 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS24855 2207fb75c8bcd90d568adb8895d8e2f5 108 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 30 41 8.6E-24 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS24855 2207fb75c8bcd90d568adb8895d8e2f5 108 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 43 58 8.6E-24 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS24855 2207fb75c8bcd90d568adb8895d8e2f5 108 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 58 73 8.6E-24 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS18220 e1a577f6b54e3e1b0c73c78398ffdc03 236 PIRSF PIRSF028111 3 235 1.3E-65 T 29-03-2018 IPR016868 Bacteriophage B3, Orf5 AM354_RS18220 e1a577f6b54e3e1b0c73c78398ffdc03 236 Pfam PF10979 Protein of unknown function (DUF2786) 9 48 3.0E-13 T 29-03-2018 IPR024498 Domain of unknown function DUF2786 AM354_RS14105 50bf523a79e87ccd6728fcce93ed1dee 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 51 6.2E-10 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS14105 50bf523a79e87ccd6728fcce93ed1dee 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 51 67 6.2E-10 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS14105 50bf523a79e87ccd6728fcce93ed1dee 229 Gene3D G3DSA:1.20.120.530 95 227 1.4E-25 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM354_RS14105 50bf523a79e87ccd6728fcce93ed1dee 229 Pfam PF07729 FCD domain 110 221 5.4E-25 T 29-03-2018 IPR011711 GntR, C-terminal AM354_RS14105 50bf523a79e87ccd6728fcce93ed1dee 229 SUPERFAMILY SSF48008 107 221 3.14E-24 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM354_RS14105 50bf523a79e87ccd6728fcce93ed1dee 229 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 77 1.8E-18 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS14105 50bf523a79e87ccd6728fcce93ed1dee 229 SMART SM00895 106 227 2.5E-21 T 29-03-2018 IPR011711 GntR, C-terminal AM354_RS14105 50bf523a79e87ccd6728fcce93ed1dee 229 SUPERFAMILY SSF46785 10 81 7.78E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS14105 50bf523a79e87ccd6728fcce93ed1dee 229 Gene3D G3DSA:1.10.10.10 2 79 1.4E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS14105 50bf523a79e87ccd6728fcce93ed1dee 229 SMART SM00345 18 77 3.5E-19 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS08870 4730caf5d0eaae792bb7c54a3ea59741 292 PRINTS PR00690 Adhesin family signature 257 276 1.7E-28 T 29-03-2018 IPR006128 Adhesion lipoprotein GO:0007155 AM354_RS08870 4730caf5d0eaae792bb7c54a3ea59741 292 PRINTS PR00690 Adhesin family signature 178 199 1.7E-28 T 29-03-2018 IPR006128 Adhesion lipoprotein GO:0007155 AM354_RS08870 4730caf5d0eaae792bb7c54a3ea59741 292 PRINTS PR00690 Adhesin family signature 54 67 1.7E-28 T 29-03-2018 IPR006128 Adhesion lipoprotein GO:0007155 AM354_RS08870 4730caf5d0eaae792bb7c54a3ea59741 292 PRINTS PR00690 Adhesin family signature 231 249 1.7E-28 T 29-03-2018 IPR006128 Adhesion lipoprotein GO:0007155 AM354_RS08870 4730caf5d0eaae792bb7c54a3ea59741 292 PRINTS PR00690 Adhesin family signature 67 84 1.7E-28 T 29-03-2018 IPR006128 Adhesion lipoprotein GO:0007155 AM354_RS08870 4730caf5d0eaae792bb7c54a3ea59741 292 PRINTS PR00690 Adhesin family signature 23 41 1.7E-28 T 29-03-2018 IPR006128 Adhesion lipoprotein GO:0007155 AM354_RS08870 4730caf5d0eaae792bb7c54a3ea59741 292 Gene3D G3DSA:3.40.50.1980 15 170 3.9E-47 T 29-03-2018 AM354_RS08870 4730caf5d0eaae792bb7c54a3ea59741 292 PRINTS PR00691 Adhesin B signature 178 195 6.8E-24 T 29-03-2018 IPR006129 Adhesin B GO:0007155 AM354_RS08870 4730caf5d0eaae792bb7c54a3ea59741 292 PRINTS PR00691 Adhesin B signature 270 288 6.8E-24 T 29-03-2018 IPR006129 Adhesin B GO:0007155 AM354_RS08870 4730caf5d0eaae792bb7c54a3ea59741 292 PRINTS PR00691 Adhesin B signature 227 244 6.8E-24 T 29-03-2018 IPR006129 Adhesin B GO:0007155 AM354_RS08870 4730caf5d0eaae792bb7c54a3ea59741 292 PRINTS PR00691 Adhesin B signature 48 66 6.8E-24 T 29-03-2018 IPR006129 Adhesin B GO:0007155 AM354_RS08870 4730caf5d0eaae792bb7c54a3ea59741 292 PRINTS PR00691 Adhesin B signature 67 86 6.8E-24 T 29-03-2018 IPR006129 Adhesin B GO:0007155 AM354_RS08870 4730caf5d0eaae792bb7c54a3ea59741 292 PRINTS PR00691 Adhesin B signature 23 44 6.8E-24 T 29-03-2018 IPR006129 Adhesin B GO:0007155 AM354_RS08870 4730caf5d0eaae792bb7c54a3ea59741 292 Gene3D G3DSA:3.40.50.1980 171 292 5.5E-37 T 29-03-2018 AM354_RS08870 4730caf5d0eaae792bb7c54a3ea59741 292 SUPERFAMILY SSF53807 20 291 5.4E-84 T 29-03-2018 AM354_RS08870 4730caf5d0eaae792bb7c54a3ea59741 292 Pfam PF01297 Zinc-uptake complex component A periplasmic 27 287 6.9E-79 T 29-03-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 AM354_RS21435 f950703496358aa15461cdedc9bb010b 156 Gene3D G3DSA:3.30.420.10 3 156 6.7E-19 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS21435 f950703496358aa15461cdedc9bb010b 156 SUPERFAMILY SSF53098 4 153 5.61E-9 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS12310 20b780c71d905f05307f597e69b9c001 334 SUPERFAMILY SSF117892 197 233 5.36E-8 T 29-03-2018 IPR001107 Band 7 domain AM354_RS12310 20b780c71d905f05307f597e69b9c001 334 PIRSF PIRSF005651 1 334 5.6E-106 T 29-03-2018 IPR010200 HflC GO:0016021|GO:0052547 AM354_RS12310 20b780c71d905f05307f597e69b9c001 334 Gene3D G3DSA:3.40.50.1010 133 332 3.5E-4 T 29-03-2018 IPR029060 PIN domain-like AM354_RS12310 20b780c71d905f05307f597e69b9c001 334 Pfam PF01145 SPFH domain / Band 7 family 22 243 3.8E-34 T 29-03-2018 IPR001107 Band 7 domain AM354_RS12310 20b780c71d905f05307f597e69b9c001 334 TIGRFAM TIGR01932 hflC: HflC protein 1 327 6.8E-138 T 29-03-2018 IPR010200 HflC GO:0016021|GO:0052547 AM354_RS12310 20b780c71d905f05307f597e69b9c001 334 SMART SM00244 18 227 5.6E-45 T 29-03-2018 IPR001107 Band 7 domain AM354_RS12310 20b780c71d905f05307f597e69b9c001 334 SUPERFAMILY SSF117892 56 169 1.11E-17 T 29-03-2018 IPR001107 Band 7 domain AM354_RS10410 517b363bbede0df6c15eb53846fac704 449 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 27 433 1.3E-139 T 29-03-2018 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 AM354_RS10410 517b363bbede0df6c15eb53846fac704 449 Hamap MF_01010 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [rlmD]. 21 441 65.118 T 29-03-2018 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 AM354_RS10410 517b363bbede0df6c15eb53846fac704 449 Gene3D G3DSA:3.40.50.150 86 439 2.5E-53 T 29-03-2018 AM354_RS10410 517b363bbede0df6c15eb53846fac704 449 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 104 437 5.4E-26 T 29-03-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 AM354_RS10410 517b363bbede0df6c15eb53846fac704 449 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 423 433 - T 29-03-2018 IPR030391 RNA methyltransferase TrmA, conserved site AM354_RS10410 517b363bbede0df6c15eb53846fac704 449 Pfam PF01938 TRAM domain 18 69 2.5E-13 T 29-03-2018 IPR002792 TRAM domain AM354_RS10410 517b363bbede0df6c15eb53846fac704 449 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 372 402 - T 29-03-2018 IPR030390 RNA methyltransferase TrmA, active site AM354_RS10410 517b363bbede0df6c15eb53846fac704 449 SUPERFAMILY SSF50249 14 69 3.2E-14 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS10410 517b363bbede0df6c15eb53846fac704 449 Gene3D G3DSA:2.40.50.140 1 85 2.3E-28 T 29-03-2018 AM354_RS10410 517b363bbede0df6c15eb53846fac704 449 SUPERFAMILY SSF53335 79 438 8.15E-84 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS12300 691cbf871dcdbaed6da05984fbd1ec93 432 Pfam PF00709 Adenylosuccinate synthetase 5 423 5.1E-179 T 29-03-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AM354_RS12300 691cbf871dcdbaed6da05984fbd1ec93 432 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 133 144 - T 29-03-2018 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AM354_RS12300 691cbf871dcdbaed6da05984fbd1ec93 432 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 6 430 2.0E-203 T 29-03-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AM354_RS12300 691cbf871dcdbaed6da05984fbd1ec93 432 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 11 18 - T 29-03-2018 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AM354_RS12300 691cbf871dcdbaed6da05984fbd1ec93 432 SUPERFAMILY SSF52540 3 431 4.89E-180 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS12300 691cbf871dcdbaed6da05984fbd1ec93 432 Gene3D G3DSA:3.40.440.10 153 266 7.8E-27 T 29-03-2018 AM354_RS12300 691cbf871dcdbaed6da05984fbd1ec93 432 Gene3D G3DSA:3.40.440.10 1 152 1.8E-54 T 29-03-2018 AM354_RS12300 691cbf871dcdbaed6da05984fbd1ec93 432 SMART SM00788 4 425 1.8E-300 T 29-03-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AM354_RS12300 691cbf871dcdbaed6da05984fbd1ec93 432 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 432 219.527 T 29-03-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AM354_RS12300 691cbf871dcdbaed6da05984fbd1ec93 432 Gene3D G3DSA:3.90.170.10 267 432 6.9E-68 T 29-03-2018 AM354_RS05220 d505cea07d146f8f7b97d6217f3ab940 403 ProSitePatterns PS00099 Thiolases active site. 384 397 - T 29-03-2018 IPR020610 Thiolase, active site GO:0008152|GO:0016747 AM354_RS05220 d505cea07d146f8f7b97d6217f3ab940 403 Gene3D G3DSA:3.40.47.10 5 281 3.5E-51 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS05220 d505cea07d146f8f7b97d6217f3ab940 403 ProSitePatterns PS00737 Thiolases signature 2. 349 365 - T 29-03-2018 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 AM354_RS05220 d505cea07d146f8f7b97d6217f3ab940 403 Pfam PF02803 Thiolase, C-terminal domain 279 400 1.6E-38 T 29-03-2018 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 AM354_RS05220 d505cea07d146f8f7b97d6217f3ab940 403 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 11 398 1.9E-127 T 29-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 AM354_RS05220 d505cea07d146f8f7b97d6217f3ab940 403 SUPERFAMILY SSF53901 279 400 8.99E-38 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS05220 d505cea07d146f8f7b97d6217f3ab940 403 SUPERFAMILY SSF53901 8 277 8.27E-73 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS05220 d505cea07d146f8f7b97d6217f3ab940 403 PIRSF PIRSF000429 2 403 2.0E-121 T 29-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 AM354_RS05220 d505cea07d146f8f7b97d6217f3ab940 403 Gene3D G3DSA:3.40.47.10 282 399 7.4E-28 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS05220 d505cea07d146f8f7b97d6217f3ab940 403 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 89 107 - T 29-03-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 AM354_RS05220 d505cea07d146f8f7b97d6217f3ab940 403 Pfam PF00108 Thiolase, N-terminal domain 8 269 6.7E-73 T 29-03-2018 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 AM354_RS19525 9944bf75ae7c34da5c5a23a53326f4d8 448 Gene3D G3DSA:3.90.1300.10 4 446 1.5E-116 T 29-03-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AM354_RS19525 9944bf75ae7c34da5c5a23a53326f4d8 448 SUPERFAMILY SSF75304 4 445 6.93E-113 T 29-03-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AM354_RS19525 9944bf75ae7c34da5c5a23a53326f4d8 448 Pfam PF01425 Amidase 37 435 1.2E-83 T 29-03-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AM354_RS19525 9944bf75ae7c34da5c5a23a53326f4d8 448 ProSitePatterns PS00571 Amidases signature. 154 185 - T 29-03-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 AM354_RS19410 304f12f1ccb24f43bd2a1be18a3c6854 297 Gene3D G3DSA:3.40.190.10 179 263 1.8E-9 T 29-03-2018 AM354_RS19410 304f12f1ccb24f43bd2a1be18a3c6854 297 Pfam PF03466 LysR substrate binding domain 93 289 3.5E-14 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS19410 304f12f1ccb24f43bd2a1be18a3c6854 297 TIGRFAM TIGR03298 argP: transcriptional regulator, ArgP family 5 293 8.6E-112 T 29-03-2018 IPR017685 HTH-type transcriptional regulator ArgP AM354_RS19410 304f12f1ccb24f43bd2a1be18a3c6854 297 Gene3D G3DSA:3.40.190.10 92 178 9.9E-36 T 29-03-2018 AM354_RS19410 304f12f1ccb24f43bd2a1be18a3c6854 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 6.5E-19 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS19410 304f12f1ccb24f43bd2a1be18a3c6854 297 Hamap MF_00513 HTH-type transcriptional regulator ArgP [argP]. 1 296 57.61 T 29-03-2018 IPR023490 HTH-type transcriptional regulator ArgP, Gammaproteobacteria AM354_RS19410 304f12f1ccb24f43bd2a1be18a3c6854 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 8.9E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS19410 304f12f1ccb24f43bd2a1be18a3c6854 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 8.9E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS19410 304f12f1ccb24f43bd2a1be18a3c6854 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 8.9E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS19410 304f12f1ccb24f43bd2a1be18a3c6854 297 SUPERFAMILY SSF53850 93 290 5.43E-20 T 29-03-2018 AM354_RS19410 304f12f1ccb24f43bd2a1be18a3c6854 297 Gene3D G3DSA:1.10.10.10 2 81 4.5E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS19410 304f12f1ccb24f43bd2a1be18a3c6854 297 SUPERFAMILY SSF46785 4 110 5.16E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS20610 82de6447de8f51bc3821c678e9dba3a6 308 SUPERFAMILY SSF46785 9 87 3.47E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS20610 82de6447de8f51bc3821c678e9dba3a6 308 Gene3D G3DSA:1.10.10.10 6 90 1.5E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS20610 82de6447de8f51bc3821c678e9dba3a6 308 Gene3D G3DSA:3.40.190.10 99 192 5.7E-11 T 29-03-2018 AM354_RS20610 82de6447de8f51bc3821c678e9dba3a6 308 Pfam PF03466 LysR substrate binding domain 99 304 5.9E-25 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS20610 82de6447de8f51bc3821c678e9dba3a6 308 Gene3D G3DSA:3.40.190.10 193 278 4.6E-14 T 29-03-2018 AM354_RS20610 82de6447de8f51bc3821c678e9dba3a6 308 SUPERFAMILY SSF53850 95 304 3.8E-42 T 29-03-2018 AM354_RS20610 82de6447de8f51bc3821c678e9dba3a6 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 70 1.2E-13 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS21680 528a6ddf5d67121b67a734bd65cf527e 149 Pfam PF01638 HxlR-like helix-turn-helix 19 104 4.1E-19 T 29-03-2018 IPR002577 Helix-turn-helix, HxlR type AM354_RS21680 528a6ddf5d67121b67a734bd65cf527e 149 SUPERFAMILY SSF46785 5 142 1.64E-37 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS21680 528a6ddf5d67121b67a734bd65cf527e 149 Gene3D G3DSA:1.10.10.10 1 148 3.4E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS17510 1310b4d98749595a165e03f51879dcbd 150 Gene3D G3DSA:1.10.10.10 6 114 8.5E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS17510 1310b4d98749595a165e03f51879dcbd 150 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 20 78 2.5E-20 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS17510 1310b4d98749595a165e03f51879dcbd 150 SUPERFAMILY SSF46785 8 126 2.26E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS17510 1310b4d98749595a165e03f51879dcbd 150 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 55 66 6.2E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS17510 1310b4d98749595a165e03f51879dcbd 150 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 55 6.2E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS17510 1310b4d98749595a165e03f51879dcbd 150 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 45 6.2E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS08175 0917ed5bf69cf8963c41fa5d73698c0b 148 Pfam PF01475 Ferric uptake regulator family 10 130 6.7E-48 T 29-03-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 AM354_RS08175 0917ed5bf69cf8963c41fa5d73698c0b 148 SUPERFAMILY SSF46785 8 134 2.96E-43 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS08175 0917ed5bf69cf8963c41fa5d73698c0b 148 Gene3D G3DSA:1.10.10.10 5 88 1.2E-27 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS01290 60a521126b9b9d78ad1e4983d701eac9 345 Gene3D G3DSA:3.40.50.1820 27 340 1.9E-7 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS01290 60a521126b9b9d78ad1e4983d701eac9 345 SUPERFAMILY SSF53474 289 327 3.97E-7 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS01290 60a521126b9b9d78ad1e4983d701eac9 345 SUPERFAMILY SSF53474 127 189 3.97E-7 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS01290 60a521126b9b9d78ad1e4983d701eac9 345 SUPERFAMILY SSF53474 43 90 3.97E-7 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS24280 78787c1de78dc72a51c2c48c049365e1 211 Gene3D G3DSA:3.40.50.360 5 193 2.6E-29 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS24280 78787c1de78dc72a51c2c48c049365e1 211 Pfam PF02525 Flavodoxin-like fold 8 160 2.9E-19 T 29-03-2018 IPR003680 Flavodoxin-like fold AM354_RS24280 78787c1de78dc72a51c2c48c049365e1 211 SUPERFAMILY SSF52218 8 204 4.6E-30 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS06720 32a1695c39e582d688f42eaaa787a1ba 473 PRINTS PR00344 Bacterial sensor protein C-terminal signature 429 447 3.9E-5 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS06720 32a1695c39e582d688f42eaaa787a1ba 473 PRINTS PR00344 Bacterial sensor protein C-terminal signature 412 422 3.9E-5 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS06720 32a1695c39e582d688f42eaaa787a1ba 473 SMART SM00387 357 472 5.9E-30 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS06720 32a1695c39e582d688f42eaaa787a1ba 473 Pfam PF00672 HAMP domain 194 243 7.4E-8 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM354_RS06720 32a1695c39e582d688f42eaaa787a1ba 473 TIGRFAM TIGR01386 cztS_silS_copS: heavy metal sensor kinase 9 457 1.7E-144 T 29-03-2018 IPR006290 Heavy metal sensor kinase GO:0000160|GO:0004673|GO:0016020 AM354_RS06720 32a1695c39e582d688f42eaaa787a1ba 473 Gene3D G3DSA:3.30.565.10 318 472 4.9E-30 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS06720 32a1695c39e582d688f42eaaa787a1ba 473 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 358 464 2.1E-16 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS06720 32a1695c39e582d688f42eaaa787a1ba 473 SMART SM00304 194 247 1.3E-10 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM354_RS06720 32a1695c39e582d688f42eaaa787a1ba 473 Pfam PF00512 His Kinase A (phospho-acceptor) domain 249 313 1.4E-10 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS06720 32a1695c39e582d688f42eaaa787a1ba 473 SUPERFAMILY SSF158472 195 244 4.58E-7 T 29-03-2018 AM354_RS06720 32a1695c39e582d688f42eaaa787a1ba 473 SUPERFAMILY SSF47384 231 312 2.55E-15 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS06720 32a1695c39e582d688f42eaaa787a1ba 473 SMART SM00388 248 314 1.7E-14 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS06720 32a1695c39e582d688f42eaaa787a1ba 473 Gene3D G3DSA:1.10.287.130 238 310 9.1E-13 T 29-03-2018 AM354_RS06720 32a1695c39e582d688f42eaaa787a1ba 473 SUPERFAMILY SSF55874 318 469 8.64E-31 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS13015 12ea9e6bbdaa82ecaa9ddfb6a9f1b866 233 PIRSF PIRSF039137 1 233 4.8E-104 T 29-03-2018 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 AM354_RS13015 12ea9e6bbdaa82ecaa9ddfb6a9f1b866 233 Gene3D G3DSA:3.40.50.300 1 233 7.9E-59 T 29-03-2018 AM354_RS13015 12ea9e6bbdaa82ecaa9ddfb6a9f1b866 233 SUPERFAMILY SSF52540 2 230 1.81E-61 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS13015 12ea9e6bbdaa82ecaa9ddfb6a9f1b866 233 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS13015 12ea9e6bbdaa82ecaa9ddfb6a9f1b866 233 SMART SM00382 26 212 9.3E-6 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS13015 12ea9e6bbdaa82ecaa9ddfb6a9f1b866 233 Pfam PF00005 ABC transporter 17 161 6.9E-34 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS15550 ff66d6aee047c9dbb43b0863611e8633 228 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 7 193 2.6E-48 T 29-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM354_RS15550 ff66d6aee047c9dbb43b0863611e8633 228 SUPERFAMILY SSF53639 2 219 5.69E-67 T 29-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM354_RS15550 ff66d6aee047c9dbb43b0863611e8633 228 SMART SM01007 6 194 3.9E-66 T 29-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM354_RS15550 ff66d6aee047c9dbb43b0863611e8633 228 Gene3D G3DSA:3.40.225.10 1 227 1.5E-59 T 29-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM354_RS11590 61efccde87fc4ebb22840cfa9848580b 525 Pfam PF00145 C-5 cytosine-specific DNA methylase 126 517 3.0E-42 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS11590 61efccde87fc4ebb22840cfa9848580b 525 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 174 188 2.7E-8 T 29-03-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 AM354_RS11590 61efccde87fc4ebb22840cfa9848580b 525 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 9 25 2.7E-8 T 29-03-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 AM354_RS11590 61efccde87fc4ebb22840cfa9848580b 525 Gene3D G3DSA:3.40.50.150 8 288 2.9E-45 T 29-03-2018 AM354_RS11590 61efccde87fc4ebb22840cfa9848580b 525 TIGRFAM TIGR00675 dcm: DNA (cytosine-5-)-methyltransferase 128 517 6.2E-37 T 29-03-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 AM354_RS11590 61efccde87fc4ebb22840cfa9848580b 525 SUPERFAMILY SSF53335 8 53 1.22E-66 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS11590 61efccde87fc4ebb22840cfa9848580b 525 SUPERFAMILY SSF53335 236 304 1.22E-66 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS11590 61efccde87fc4ebb22840cfa9848580b 525 SUPERFAMILY SSF53335 384 519 1.22E-66 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS11590 61efccde87fc4ebb22840cfa9848580b 525 SUPERFAMILY SSF53335 123 204 1.22E-66 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS11590 61efccde87fc4ebb22840cfa9848580b 525 Gene3D G3DSA:3.90.120.10 292 507 1.8E-19 T 29-03-2018 AM354_RS01735 46beb3501cdb45672a2c95904c175024 815 Pfam PF00924 Mechanosensitive ion channel 592 789 2.6E-43 T 29-03-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 AM354_RS01735 46beb3501cdb45672a2c95904c175024 815 SUPERFAMILY SSF82689 707 801 1.05E-13 T 29-03-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 AM354_RS01735 46beb3501cdb45672a2c95904c175024 815 Pfam PF12607 Protein of unknown function (DUF3772) 141 202 5.2E-18 T 29-03-2018 IPR022249 Domain of unknown function DUF3772 AM354_RS01735 46beb3501cdb45672a2c95904c175024 815 Gene3D G3DSA:2.30.30.60 649 697 3.1E-13 T 29-03-2018 AM354_RS01735 46beb3501cdb45672a2c95904c175024 815 SUPERFAMILY SSF82861 549 632 2.35E-10 T 29-03-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 AM354_RS01735 46beb3501cdb45672a2c95904c175024 815 Gene3D G3DSA:3.30.70.100 700 795 1.8E-11 T 29-03-2018 AM354_RS01735 46beb3501cdb45672a2c95904c175024 815 SUPERFAMILY SSF50182 634 698 1.96E-15 T 29-03-2018 IPR010920 LSM domain AM354_RS18000 f1f1dc6c43255635e929e05bba74934d 274 PRINTS PR00069 Aldo-keto reductase signature 124 141 1.7E-47 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM354_RS18000 f1f1dc6c43255635e929e05bba74934d 274 PRINTS PR00069 Aldo-keto reductase signature 92 110 1.7E-47 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM354_RS18000 f1f1dc6c43255635e929e05bba74934d 274 PRINTS PR00069 Aldo-keto reductase signature 197 221 1.7E-47 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM354_RS18000 f1f1dc6c43255635e929e05bba74934d 274 PRINTS PR00069 Aldo-keto reductase signature 38 62 1.7E-47 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM354_RS18000 f1f1dc6c43255635e929e05bba74934d 274 PRINTS PR00069 Aldo-keto reductase signature 158 187 1.7E-47 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM354_RS18000 f1f1dc6c43255635e929e05bba74934d 274 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 42 59 - T 29-03-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AM354_RS18000 f1f1dc6c43255635e929e05bba74934d 274 PIRSF PIRSF000097 1 116 1.6E-42 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM354_RS18000 f1f1dc6c43255635e929e05bba74934d 274 PIRSF PIRSF000097 112 269 2.1E-50 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM354_RS18000 f1f1dc6c43255635e929e05bba74934d 274 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 124 141 - T 29-03-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AM354_RS18000 f1f1dc6c43255635e929e05bba74934d 274 ProSitePatterns PS00063 Aldo/keto reductase family putative active site signature. 230 245 - T 29-03-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AM354_RS18000 f1f1dc6c43255635e929e05bba74934d 274 Gene3D G3DSA:3.20.20.100 1 274 6.9E-92 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS18000 f1f1dc6c43255635e929e05bba74934d 274 Pfam PF00248 Aldo/keto reductase family 19 262 2.5E-44 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS18000 f1f1dc6c43255635e929e05bba74934d 274 SUPERFAMILY SSF51430 3 267 2.75E-86 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS11310 0f188a51f44ef82c46d8aedb776aefe1 570 Gene3D G3DSA:3.30.1120.10 457 542 1.5E-11 T 29-03-2018 AM354_RS11310 0f188a51f44ef82c46d8aedb776aefe1 570 SUPERFAMILY SSF53649 24 530 2.33E-124 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AM354_RS11310 0f188a51f44ef82c46d8aedb776aefe1 570 Gene3D G3DSA:3.40.720.10 23 456 3.3E-101 T 29-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 AM354_RS11310 0f188a51f44ef82c46d8aedb776aefe1 570 Pfam PF00884 Sulfatase 26 428 1.7E-66 T 29-03-2018 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 AM354_RS11310 0f188a51f44ef82c46d8aedb776aefe1 570 ProSitePatterns PS00149 Sulfatases signature 2. 124 134 - T 29-03-2018 IPR024607 Sulfatase, conserved site AM354_RS11310 0f188a51f44ef82c46d8aedb776aefe1 570 ProSitePatterns PS00523 Sulfatases signature 1. 70 82 - T 29-03-2018 IPR024607 Sulfatase, conserved site AM354_RS14660 ee26ac16cf3d498121264b6d407ffc3c 243 Pfam PF08534 Redoxin 5 160 2.3E-33 T 29-03-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 AM354_RS14660 ee26ac16cf3d498121264b6d407ffc3c 243 Pfam PF00462 Glutaredoxin 173 231 1.6E-19 T 29-03-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 AM354_RS14660 ee26ac16cf3d498121264b6d407ffc3c 243 Gene3D G3DSA:3.40.30.10 172 242 7.2E-22 T 29-03-2018 AM354_RS14660 ee26ac16cf3d498121264b6d407ffc3c 243 SUPERFAMILY SSF52833 2 241 9.99E-47 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS14660 ee26ac16cf3d498121264b6d407ffc3c 243 PRINTS PR00160 Glutaredoxin signature 214 227 1.2E-14 T 29-03-2018 IPR014025 Glutaredoxin subgroup AM354_RS14660 ee26ac16cf3d498121264b6d407ffc3c 243 PRINTS PR00160 Glutaredoxin signature 228 241 1.2E-14 T 29-03-2018 IPR014025 Glutaredoxin subgroup AM354_RS14660 ee26ac16cf3d498121264b6d407ffc3c 243 PRINTS PR00160 Glutaredoxin signature 173 191 1.2E-14 T 29-03-2018 IPR014025 Glutaredoxin subgroup AM354_RS14660 ee26ac16cf3d498121264b6d407ffc3c 243 ProSitePatterns PS00195 Glutaredoxin active site. 175 191 - T 29-03-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 AM354_RS14660 ee26ac16cf3d498121264b6d407ffc3c 243 Gene3D G3DSA:3.40.30.10 3 163 6.3E-29 T 29-03-2018 AM354_RS14660 ee26ac16cf3d498121264b6d407ffc3c 243 TIGRFAM TIGR02190 GlrX-dom: glutaredoxin-family domain 164 242 1.5E-39 T 29-03-2018 IPR011906 Glutaredoxin domain KEGG: 00480+1.11.1.15 AM354_RS13040 f6aec84a6473d5f692b6047bdefc28e0 130 SUPERFAMILY SSF55729 15 126 8.07E-11 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS13040 f6aec84a6473d5f692b6047bdefc28e0 130 Gene3D G3DSA:3.40.630.30 1 130 3.7E-14 T 29-03-2018 AM354_RS13040 f6aec84a6473d5f692b6047bdefc28e0 130 Pfam PF12568 Acetyltransferase (GNAT) domain 2 129 4.9E-55 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS13040 f6aec84a6473d5f692b6047bdefc28e0 130 Hamap MF_02018 PanD maturation factor [panM]. 1 130 33.792 T 29-03-2018 IPR032900 PanD regulatory factor PanM GO:0015940|GO:0031638 AM354_RS14040 43a4c765774a91a8c8416e7d9f3649f9 146 Pfam PF00258 Flavodoxin 7 138 3.6E-26 T 29-03-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 AM354_RS14040 43a4c765774a91a8c8416e7d9f3649f9 146 PRINTS PR00369 Flavodoxin signature 106 125 8.9E-7 T 29-03-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 AM354_RS14040 43a4c765774a91a8c8416e7d9f3649f9 146 PRINTS PR00369 Flavodoxin signature 82 92 8.9E-7 T 29-03-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 AM354_RS14040 43a4c765774a91a8c8416e7d9f3649f9 146 PRINTS PR00369 Flavodoxin signature 5 18 8.9E-7 T 29-03-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 AM354_RS14040 43a4c765774a91a8c8416e7d9f3649f9 146 PRINTS PR00369 Flavodoxin signature 51 62 8.9E-7 T 29-03-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 AM354_RS14040 43a4c765774a91a8c8416e7d9f3649f9 146 SUPERFAMILY SSF52218 1 146 2.19E-41 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS14040 43a4c765774a91a8c8416e7d9f3649f9 146 Gene3D G3DSA:3.40.50.360 1 146 1.9E-30 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS10690 adfa4e667885ac97f246b998e2e6b956 535 Gene3D G3DSA:1.10.3720.10 11 271 3.3E-35 T 29-03-2018 AM354_RS10690 adfa4e667885ac97f246b998e2e6b956 535 SUPERFAMILY SSF161098 9 264 7.2E-47 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS10690 adfa4e667885ac97f246b998e2e6b956 535 TIGRFAM TIGR01253 thiP: thiamine/thiamine pyrophosphate ABC transporter, permease protein 8 525 1.5E-246 T 29-03-2018 IPR005947 Thiamine ABC transporter, permease protein GO:0005215|GO:0015888|GO:0016021 AM354_RS10690 adfa4e667885ac97f246b998e2e6b956 535 SUPERFAMILY SSF161098 285 528 7.85E-32 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS10690 adfa4e667885ac97f246b998e2e6b956 535 Gene3D G3DSA:1.10.3720.10 323 534 9.2E-27 T 29-03-2018 AM354_RS10690 adfa4e667885ac97f246b998e2e6b956 535 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 375 524 4.9E-8 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS10690 adfa4e667885ac97f246b998e2e6b956 535 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 74 265 7.1E-14 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS16945 3605386885fb03fdd66666e0b7e96b2a 271 Pfam PF00005 ABC transporter 25 172 3.2E-29 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS16945 3605386885fb03fdd66666e0b7e96b2a 271 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS16945 3605386885fb03fdd66666e0b7e96b2a 271 SMART SM00382 33 229 6.2E-14 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS16945 3605386885fb03fdd66666e0b7e96b2a 271 Gene3D G3DSA:3.40.50.300 5 252 2.5E-63 T 29-03-2018 AM354_RS16945 3605386885fb03fdd66666e0b7e96b2a 271 SUPERFAMILY SSF52540 8 237 2.96E-63 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS04660 d4d288bec799a24296817de275a1d0c4 313 SUPERFAMILY SSF51735 97 278 1.52E-47 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS04660 d4d288bec799a24296817de275a1d0c4 313 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 106 278 8.5E-46 T 29-03-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AM354_RS04660 d4d288bec799a24296817de275a1d0c4 313 Gene3D G3DSA:3.40.50.720 1 124 2.8E-15 T 29-03-2018 AM354_RS04660 d4d288bec799a24296817de275a1d0c4 313 Hamap MF_01666 Glyoxylate/hydroxypyruvate reductase A [ghrA]. 1 313 65.578 T 29-03-2018 IPR023514 Glyoxylate/hydroxypyruvate reductase A GO:0016618|GO:0030267|GO:0055114 KEGG: 00260+1.1.1.81|KEGG: 00620+1.1.1.79|KEGG: 00630+1.1.1.79+1.1.1.81|MetaCyc: PWY-1622 AM354_RS04660 d4d288bec799a24296817de275a1d0c4 313 Gene3D G3DSA:3.40.50.720 125 279 1.2E-38 T 29-03-2018 AM354_RS10605 dec9c2b8d8f47d77c596204ef479eeef 313 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 1 310 5.7E-127 T 29-03-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AM354_RS10605 dec9c2b8d8f47d77c596204ef479eeef 313 Gene3D G3DSA:3.40.50.150 7 171 5.8E-18 T 29-03-2018 AM354_RS10605 dec9c2b8d8f47d77c596204ef479eeef 313 Gene3D G3DSA:3.40.50.150 172 313 1.0E-18 T 29-03-2018 AM354_RS10605 dec9c2b8d8f47d77c596204ef479eeef 313 PIRSF PIRSF004486 1 312 2.6E-100 T 29-03-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AM354_RS10605 dec9c2b8d8f47d77c596204ef479eeef 313 Pfam PF01795 MraW methylase family 5 310 4.9E-118 T 29-03-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AM354_RS10605 dec9c2b8d8f47d77c596204ef479eeef 313 SUPERFAMILY SSF53335 7 113 3.85E-45 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS10605 dec9c2b8d8f47d77c596204ef479eeef 313 SUPERFAMILY SSF53335 213 311 3.85E-45 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS10605 dec9c2b8d8f47d77c596204ef479eeef 313 SUPERFAMILY SSF81799 114 213 2.88E-34 T 29-03-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AM354_RS10605 dec9c2b8d8f47d77c596204ef479eeef 313 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 7 311 38.579 T 29-03-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AM354_RS22535 6cf5e726afebff54612420105e14e323 329 Pfam PF00248 Aldo/keto reductase family 28 327 8.6E-68 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS22535 6cf5e726afebff54612420105e14e323 329 Gene3D G3DSA:3.20.20.100 15 328 9.6E-86 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS22535 6cf5e726afebff54612420105e14e323 329 SUPERFAMILY SSF51430 13 327 5.24E-89 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS07335 0a2b51602ca8674421ab47db66d2c717 297 Gene3D G3DSA:3.40.190.10 176 266 1.0E-23 T 29-03-2018 AM354_RS07335 0a2b51602ca8674421ab47db66d2c717 297 SUPERFAMILY SSF53850 90 297 3.41E-45 T 29-03-2018 AM354_RS07335 0a2b51602ca8674421ab47db66d2c717 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 2.9E-18 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS07335 0a2b51602ca8674421ab47db66d2c717 297 Gene3D G3DSA:3.40.190.10 91 175 4.6E-11 T 29-03-2018 AM354_RS07335 0a2b51602ca8674421ab47db66d2c717 297 Gene3D G3DSA:1.10.10.10 2 85 3.5E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS07335 0a2b51602ca8674421ab47db66d2c717 297 SUPERFAMILY SSF46785 7 88 2.27E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS07335 0a2b51602ca8674421ab47db66d2c717 297 Pfam PF03466 LysR substrate binding domain 89 296 1.9E-44 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS07180 b3a5d512a8656eb3b93935e26f0f7bc4 299 SUPERFAMILY SSF161098 86 275 3.11E-25 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS07180 b3a5d512a8656eb3b93935e26f0f7bc4 299 Gene3D G3DSA:1.10.3720.10 29 287 1.9E-19 T 29-03-2018 AM354_RS07180 b3a5d512a8656eb3b93935e26f0f7bc4 299 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 109 271 1.5E-6 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS07180 b3a5d512a8656eb3b93935e26f0f7bc4 299 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 32 283 9.1E-78 T 29-03-2018 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 AM354_RS18095 13a31ac6887f319124a1afb9cea46232 279 Gene3D G3DSA:3.30.1130.10 18 132 4.1E-38 T 29-03-2018 AM354_RS18095 13a31ac6887f319124a1afb9cea46232 279 Hamap MF_00817 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 279 144.63 T 29-03-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 AM354_RS18095 13a31ac6887f319124a1afb9cea46232 279 TIGRFAM TIGR03138 QueF: queuine synthase 9 279 7.6E-120 T 29-03-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 AM354_RS18095 13a31ac6887f319124a1afb9cea46232 279 Pfam PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term 18 128 1.4E-46 T 29-03-2018 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 AM354_RS18095 13a31ac6887f319124a1afb9cea46232 279 PIRSF PIRSF004750 3 279 1.7E-117 T 29-03-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 AM354_RS18095 13a31ac6887f319124a1afb9cea46232 279 Gene3D G3DSA:3.30.1130.10 141 279 2.8E-45 T 29-03-2018 AM354_RS18095 13a31ac6887f319124a1afb9cea46232 279 Pfam PF14489 QueF-like protein 193 266 8.0E-28 T 29-03-2018 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 AM354_RS18095 13a31ac6887f319124a1afb9cea46232 279 SUPERFAMILY SSF55620 184 263 7.19E-9 T 29-03-2018 AM354_RS14670 fc0ded7a8e5261e6d46ce36fa4c32d47 465 Hamap MF_00247 Soluble pyridine nucleotide transhydrogenase [sthA]. 2 465 66.979 T 29-03-2018 IPR022962 Soluble pyridine nucleotide transhydrogenase GO:0003957|GO:0055114 KEGG: 00760+1.6.1.1|MetaCyc: PWY-5083 AM354_RS14670 fc0ded7a8e5261e6d46ce36fa4c32d47 465 Gene3D G3DSA:3.50.50.60 3 162 1.7E-23 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS14670 fc0ded7a8e5261e6d46ce36fa4c32d47 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 141 150 4.3E-51 T 29-03-2018 AM354_RS14670 fc0ded7a8e5261e6d46ce36fa4c32d47 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 177 202 4.3E-51 T 29-03-2018 AM354_RS14670 fc0ded7a8e5261e6d46ce36fa4c32d47 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 305 312 4.3E-51 T 29-03-2018 AM354_RS14670 fc0ded7a8e5261e6d46ce36fa4c32d47 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 4.3E-51 T 29-03-2018 AM354_RS14670 fc0ded7a8e5261e6d46ce36fa4c32d47 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 406 421 4.3E-51 T 29-03-2018 AM354_RS14670 fc0ded7a8e5261e6d46ce36fa4c32d47 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 431 451 4.3E-51 T 29-03-2018 AM354_RS14670 fc0ded7a8e5261e6d46ce36fa4c32d47 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 41 56 4.3E-51 T 29-03-2018 AM354_RS14670 fc0ded7a8e5261e6d46ce36fa4c32d47 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 262 276 4.3E-51 T 29-03-2018 AM354_RS14670 fc0ded7a8e5261e6d46ce36fa4c32d47 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 341 362 4.3E-51 T 29-03-2018 AM354_RS14670 fc0ded7a8e5261e6d46ce36fa4c32d47 465 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 345 456 2.4E-29 T 29-03-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AM354_RS14670 fc0ded7a8e5261e6d46ce36fa4c32d47 465 PIRSF PIRSF000350 1 462 3.8E-70 T 29-03-2018 AM354_RS14670 fc0ded7a8e5261e6d46ce36fa4c32d47 465 Gene3D G3DSA:3.30.390.30 334 462 2.4E-33 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AM354_RS14670 fc0ded7a8e5261e6d46ce36fa4c32d47 465 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 325 1.1E-58 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS14670 fc0ded7a8e5261e6d46ce36fa4c32d47 465 Gene3D G3DSA:3.40.50.720 163 333 2.1E-28 T 29-03-2018 AM354_RS14670 fc0ded7a8e5261e6d46ce36fa4c32d47 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 5.9E-26 T 29-03-2018 AM354_RS14670 fc0ded7a8e5261e6d46ce36fa4c32d47 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 138 156 5.9E-26 T 29-03-2018 AM354_RS14670 fc0ded7a8e5261e6d46ce36fa4c32d47 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 277 5.9E-26 T 29-03-2018 AM354_RS14670 fc0ded7a8e5261e6d46ce36fa4c32d47 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 290 312 5.9E-26 T 29-03-2018 AM354_RS14670 fc0ded7a8e5261e6d46ce36fa4c32d47 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 177 195 5.9E-26 T 29-03-2018 AM354_RS14670 fc0ded7a8e5261e6d46ce36fa4c32d47 465 SUPERFAMILY SSF51905 1 321 4.54E-57 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS14670 fc0ded7a8e5261e6d46ce36fa4c32d47 465 SUPERFAMILY SSF55424 344 462 1.03E-29 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AM354_RS11755 e18a93e9aaa9d30ef2d465afbcdb91b2 902 TIGRFAM TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase 43 902 0.0 T 29-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 AM354_RS11755 e18a93e9aaa9d30ef2d465afbcdb91b2 902 Gene3D G3DSA:1.20.1110.10 563 899 4.1E-58 T 29-03-2018 AM354_RS11755 e18a93e9aaa9d30ef2d465afbcdb91b2 902 Gene3D G3DSA:3.40.1110.10 332 550 4.2E-38 T 29-03-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AM354_RS11755 e18a93e9aaa9d30ef2d465afbcdb91b2 902 SUPERFAMILY SSF81665 276 369 4.45E-101 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 AM354_RS11755 e18a93e9aaa9d30ef2d465afbcdb91b2 902 SUPERFAMILY SSF81665 57 160 4.45E-101 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 AM354_RS11755 e18a93e9aaa9d30ef2d465afbcdb91b2 902 SUPERFAMILY SSF81665 692 900 4.45E-101 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 AM354_RS11755 e18a93e9aaa9d30ef2d465afbcdb91b2 902 Pfam PF00689 Cation transporting ATPase, C-terminus 726 892 2.1E-13 T 29-03-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 AM354_RS11755 e18a93e9aaa9d30ef2d465afbcdb91b2 902 SUPERFAMILY SSF56784 534 687 3.0E-38 T 29-03-2018 IPR023214 HAD-like domain AM354_RS11755 e18a93e9aaa9d30ef2d465afbcdb91b2 902 Pfam PF00702 haloacid dehalogenase-like hydrolase 371 657 5.6E-20 T 29-03-2018 AM354_RS11755 e18a93e9aaa9d30ef2d465afbcdb91b2 902 Pfam PF00122 E1-E2 ATPase 158 355 4.7E-44 T 29-03-2018 AM354_RS11755 e18a93e9aaa9d30ef2d465afbcdb91b2 902 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 128 393 4.1E-36 T 29-03-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AM354_RS11755 e18a93e9aaa9d30ef2d465afbcdb91b2 902 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 604 732 1.6E-30 T 29-03-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AM354_RS11755 e18a93e9aaa9d30ef2d465afbcdb91b2 902 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 377 383 - T 29-03-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 AM354_RS11755 e18a93e9aaa9d30ef2d465afbcdb91b2 902 Gene3D G3DSA:2.70.150.10 58 276 2.2E-44 T 29-03-2018 AM354_RS11755 e18a93e9aaa9d30ef2d465afbcdb91b2 902 SUPERFAMILY SSF81653 173 274 1.06E-26 T 29-03-2018 IPR008250 P-type ATPase, A domain Reactome: R-HSA-936837 AM354_RS11755 e18a93e9aaa9d30ef2d465afbcdb91b2 902 Pfam PF00690 Cation transporter/ATPase, N-terminus 55 117 1.3E-12 T 29-03-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 AM354_RS11755 e18a93e9aaa9d30ef2d465afbcdb91b2 902 PRINTS PR01836 Magnesium-transporting ATPase signature 719 730 2.8E-82 T 29-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 AM354_RS11755 e18a93e9aaa9d30ef2d465afbcdb91b2 902 PRINTS PR01836 Magnesium-transporting ATPase signature 751 764 2.8E-82 T 29-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 AM354_RS11755 e18a93e9aaa9d30ef2d465afbcdb91b2 902 PRINTS PR01836 Magnesium-transporting ATPase signature 288 304 2.8E-82 T 29-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 AM354_RS11755 e18a93e9aaa9d30ef2d465afbcdb91b2 902 PRINTS PR01836 Magnesium-transporting ATPase signature 409 422 2.8E-82 T 29-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 AM354_RS11755 e18a93e9aaa9d30ef2d465afbcdb91b2 902 PRINTS PR01836 Magnesium-transporting ATPase signature 856 877 2.8E-82 T 29-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 AM354_RS11755 e18a93e9aaa9d30ef2d465afbcdb91b2 902 PRINTS PR01836 Magnesium-transporting ATPase signature 701 716 2.8E-82 T 29-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 AM354_RS11755 e18a93e9aaa9d30ef2d465afbcdb91b2 902 PRINTS PR01836 Magnesium-transporting ATPase signature 305 324 2.8E-82 T 29-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 AM354_RS11755 e18a93e9aaa9d30ef2d465afbcdb91b2 902 PRINTS PR01836 Magnesium-transporting ATPase signature 771 787 2.8E-82 T 29-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 AM354_RS11755 e18a93e9aaa9d30ef2d465afbcdb91b2 902 PRINTS PR01836 Magnesium-transporting ATPase signature 806 827 2.8E-82 T 29-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 AM354_RS11755 e18a93e9aaa9d30ef2d465afbcdb91b2 902 SMART SM00831 50 122 1.7E-6 T 29-03-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 AM354_RS11755 e18a93e9aaa9d30ef2d465afbcdb91b2 902 SUPERFAMILY SSF81660 370 551 6.76E-40 T 29-03-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AM354_RS07805 1b33fa5c020d87ae975e28657c7f71bf 251 SUPERFAMILY SSF53335 20 190 1.79E-28 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS07805 1b33fa5c020d87ae975e28657c7f71bf 251 Pfam PF13649 Methyltransferase domain 45 145 3.8E-13 T 29-03-2018 AM354_RS07805 1b33fa5c020d87ae975e28657c7f71bf 251 Gene3D G3DSA:3.40.50.150 5 251 6.1E-32 T 29-03-2018 AM354_RS08360 3e7b8de98e426dc3552a2bef16092be9 156 Pfam PF02590 Predicted SPOUT methyltransferase 2 154 3.1E-46 T 29-03-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM354_RS08360 3e7b8de98e426dc3552a2bef16092be9 156 Gene3D G3DSA:3.40.1280.10 1 155 6.5E-49 T 29-03-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AM354_RS08360 3e7b8de98e426dc3552a2bef16092be9 156 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 155 26.129 T 29-03-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM354_RS08360 3e7b8de98e426dc3552a2bef16092be9 156 TIGRFAM TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH 1 156 1.6E-81 T 29-03-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM354_RS08360 3e7b8de98e426dc3552a2bef16092be9 156 PIRSF PIRSF004505 1 155 9.4E-40 T 29-03-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM354_RS08360 3e7b8de98e426dc3552a2bef16092be9 156 SUPERFAMILY SSF75217 2 154 6.28E-48 T 29-03-2018 IPR029028 Alpha/beta knot methyltransferases AM354_RS16180 11a4f093cd52f1aabafe8b9c4664f53e 373 SUPERFAMILY SSF102405 78 283 3.05E-43 T 29-03-2018 AM354_RS16180 11a4f093cd52f1aabafe8b9c4664f53e 373 Pfam PF02481 DNA recombination-mediator protein A 71 274 1.6E-74 T 29-03-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 AM354_RS16180 11a4f093cd52f1aabafe8b9c4664f53e 373 Gene3D G3DSA:1.10.10.10 270 361 5.8E-7 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS16180 11a4f093cd52f1aabafe8b9c4664f53e 373 Gene3D G3DSA:3.40.50.450 108 251 1.6E-36 T 29-03-2018 AM354_RS16180 11a4f093cd52f1aabafe8b9c4664f53e 373 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 66 282 2.5E-77 T 29-03-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 AM354_RS25320 aae3a1021c8c0d436731ce2e836110d4 134 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 29-03-2018 IPR019776 Flagellar basal body rod protein, conserved site AM354_RS25320 aae3a1021c8c0d436731ce2e836110d4 134 Pfam PF00460 Flagella basal body rod protein 7 37 1.3E-8 T 29-03-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 AM354_RS25320 aae3a1021c8c0d436731ce2e836110d4 134 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 4 134 3.5E-52 T 29-03-2018 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 AM354_RS25320 aae3a1021c8c0d436731ce2e836110d4 134 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 87 132 2.3E-12 T 29-03-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain AM354_RS08160 713a3a6e47169448a1d62666d1316021 257 Pfam PF12697 Alpha/beta hydrolase family 21 248 3.4E-23 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS08160 713a3a6e47169448a1d62666d1316021 257 Gene3D G3DSA:3.40.50.1820 4 256 1.4E-54 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS08160 713a3a6e47169448a1d62666d1316021 257 PRINTS PR00111 Alpha/beta hydrolase fold signature 101 114 1.7E-5 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS08160 713a3a6e47169448a1d62666d1316021 257 PRINTS PR00111 Alpha/beta hydrolase fold signature 87 100 1.7E-5 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS08160 713a3a6e47169448a1d62666d1316021 257 PRINTS PR00111 Alpha/beta hydrolase fold signature 44 59 1.7E-5 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS08160 713a3a6e47169448a1d62666d1316021 257 SUPERFAMILY SSF53474 6 256 4.63E-54 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS23580 793b90643844501f8fdc5c461805085f 324 SMART SM00833 239 322 0.0079 T 29-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal AM354_RS23580 793b90643844501f8fdc5c461805085f 324 SUPERFAMILY SSF52540 6 163 3.4E-25 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS23580 793b90643844501f8fdc5c461805085f 324 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 5 166 1.8E-39 T 29-03-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain AM354_RS23580 793b90643844501f8fdc5c461805085f 324 Gene3D G3DSA:3.40.50.300 1 195 2.1E-26 T 29-03-2018 AM354_RS25155 fff3c7e71171c74f219fad95d96479c6 850 Gene3D G3DSA:2.160.10.20 730 783 5.9E-14 T 29-03-2018 AM354_RS25155 fff3c7e71171c74f219fad95d96479c6 850 Pfam PF00805 Pentapeptide repeats (8 copies) 557 595 2.3E-9 T 29-03-2018 IPR001646 Pentapeptide repeat AM354_RS25155 fff3c7e71171c74f219fad95d96479c6 850 Pfam PF00805 Pentapeptide repeats (8 copies) 788 823 1.2E-9 T 29-03-2018 IPR001646 Pentapeptide repeat AM354_RS25155 fff3c7e71171c74f219fad95d96479c6 850 Pfam PF00805 Pentapeptide repeats (8 copies) 526 556 5.6E-5 T 29-03-2018 IPR001646 Pentapeptide repeat AM354_RS25155 fff3c7e71171c74f219fad95d96479c6 850 SUPERFAMILY SSF141571 525 637 1.11E-23 T 29-03-2018 AM354_RS25155 fff3c7e71171c74f219fad95d96479c6 850 Gene3D G3DSA:3.30.1120.50 784 835 1.1E-11 T 29-03-2018 AM354_RS25155 fff3c7e71171c74f219fad95d96479c6 850 Pfam PF09937 Uncharacterized protein conserved in bacteria (DUF2169) 20 299 3.6E-80 T 29-03-2018 IPR018683 Domain of unknown function DUF2169 AM354_RS25155 fff3c7e71171c74f219fad95d96479c6 850 Gene3D G3DSA:2.160.20.80 509 640 7.4E-28 T 29-03-2018 AM354_RS25155 fff3c7e71171c74f219fad95d96479c6 850 Gene3D G3DSA:2.160.10.20 641 729 1.3E-13 T 29-03-2018 AM354_RS25155 fff3c7e71171c74f219fad95d96479c6 850 Pfam PF13599 Pentapeptide repeats (9 copies) 725 785 5.4E-9 T 29-03-2018 IPR001646 Pentapeptide repeat AM354_RS25155 fff3c7e71171c74f219fad95d96479c6 850 Pfam PF13599 Pentapeptide repeats (9 copies) 653 724 4.8E-10 T 29-03-2018 IPR001646 Pentapeptide repeat AM354_RS25155 fff3c7e71171c74f219fad95d96479c6 850 SUPERFAMILY SSF141571 688 829 2.94E-29 T 29-03-2018 AM354_RS23195 da91855d469013408c7a7919ca88d453 411 Gene3D G3DSA:1.20.1250.20 13 216 2.4E-16 T 29-03-2018 AM354_RS23195 da91855d469013408c7a7919ca88d453 411 SUPERFAMILY SSF103473 15 406 6.28E-34 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS23195 da91855d469013408c7a7919ca88d453 411 Pfam PF07690 Major Facilitator Superfamily 26 366 1.3E-19 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS23195 da91855d469013408c7a7919ca88d453 411 Gene3D G3DSA:1.20.1250.20 217 409 1.2E-10 T 29-03-2018 AM354_RS22875 da2fddd79f1aeb14a99ec6a5cd1009c9 678 Pfam PF11412 Disulphide bond corrector protein DsbC 42 146 1.5E-16 T 29-03-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain AM354_RS22875 da2fddd79f1aeb14a99ec6a5cd1009c9 678 SUPERFAMILY SSF52833 554 669 9.42E-12 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS22875 da2fddd79f1aeb14a99ec6a5cd1009c9 678 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 285 489 2.9E-10 T 29-03-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 AM354_RS22875 da2fddd79f1aeb14a99ec6a5cd1009c9 678 Gene3D G3DSA:2.60.40.1250 29 157 7.4E-7 T 29-03-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain AM354_RS22875 da2fddd79f1aeb14a99ec6a5cd1009c9 678 Pfam PF13899 Thioredoxin-like 563 648 7.9E-13 T 29-03-2018 AM354_RS22875 da2fddd79f1aeb14a99ec6a5cd1009c9 678 Gene3D G3DSA:3.40.30.10 549 664 2.0E-9 T 29-03-2018 AM354_RS14665 22c1cc3d7c5defe5c16e84f4fb8a1272 305 SUPERFAMILY SSF53850 89 296 1.17E-46 T 29-03-2018 AM354_RS14665 22c1cc3d7c5defe5c16e84f4fb8a1272 305 Pfam PF03466 LysR substrate binding domain 88 293 6.6E-53 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS14665 22c1cc3d7c5defe5c16e84f4fb8a1272 305 Gene3D G3DSA:3.40.190.10 87 175 2.1E-22 T 29-03-2018 AM354_RS14665 22c1cc3d7c5defe5c16e84f4fb8a1272 305 Gene3D G3DSA:3.40.190.10 176 264 1.0E-26 T 29-03-2018 AM354_RS14665 22c1cc3d7c5defe5c16e84f4fb8a1272 305 SUPERFAMILY SSF46785 1 85 1.18E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS14665 22c1cc3d7c5defe5c16e84f4fb8a1272 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 8.5E-21 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS14665 22c1cc3d7c5defe5c16e84f4fb8a1272 305 Gene3D G3DSA:1.10.10.10 1 82 5.3E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS14665 22c1cc3d7c5defe5c16e84f4fb8a1272 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.4E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS14665 22c1cc3d7c5defe5c16e84f4fb8a1272 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.4E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS14665 22c1cc3d7c5defe5c16e84f4fb8a1272 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.4E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS18750 6a8d32f94ec8c950444c45068d8dfd60 328 PIRSF PIRSF037112 5 328 4.5E-115 T 29-03-2018 IPR017113 Antirestriction, ArdC AM354_RS18750 6a8d32f94ec8c950444c45068d8dfd60 328 Pfam PF08401 Domain of unknown function (DUF1738) 18 146 1.3E-40 T 29-03-2018 IPR013610 Domain of unknown function DUF1738 AM354_RS13310 afb4c2e1d7361738a47077ab63df0291 246 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 65 231 9.2E-52 T 29-03-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 AM354_RS13310 afb4c2e1d7361738a47077ab63df0291 246 Hamap MF_01001 UDP-N-acetyl-D-mannosaminuronic acid transferase [wecG]. 1 246 59.536 T 29-03-2018 IPR023085 UDP-N-acetyl-D-mannosaminuronic acid transferase GO:0009246|GO:0016758 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 AM354_RS13310 afb4c2e1d7361738a47077ab63df0291 246 TIGRFAM TIGR00696 wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family 61 237 6.1E-73 T 29-03-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 AM354_RS06605 bc48bae4c4c085bbd8d0c642128acb53 864 SUPERFAMILY SSF141729 59 168 4.32E-26 T 29-03-2018 AM354_RS06605 bc48bae4c4c085bbd8d0c642128acb53 864 Pfam PF13954 PapC N-terminal domain 38 177 1.1E-36 T 29-03-2018 IPR025885 PapC, N-terminal domain GO:0005515 AM354_RS06605 bc48bae4c4c085bbd8d0c642128acb53 864 Pfam PF13953 PapC C-terminal domain 781 840 1.8E-10 T 29-03-2018 IPR025949 PapC-like, C-terminal domain AM354_RS06605 bc48bae4c4c085bbd8d0c642128acb53 864 Pfam PF00577 Outer membrane usher protein 195 771 2.9E-181 T 29-03-2018 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 AM354_RS19165 4ca87cf9f2320949dc90d75ef2a5aee7 347 SUPERFAMILY SSF50022 5 130 9.56E-32 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AM354_RS19165 4ca87cf9f2320949dc90d75ef2a5aee7 347 SUPERFAMILY SSF55961 137 337 1.33E-48 T 29-03-2018 AM354_RS19165 4ca87cf9f2320949dc90d75ef2a5aee7 347 Gene3D G3DSA:3.90.380.10 125 342 1.7E-39 T 29-03-2018 AM354_RS19165 4ca87cf9f2320949dc90d75ef2a5aee7 347 Pfam PF00355 Rieske [2Fe-2S] domain 24 104 2.0E-18 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AM354_RS19165 4ca87cf9f2320949dc90d75ef2a5aee7 347 Gene3D G3DSA:2.102.10.10 7 124 3.4E-21 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AM354_RS23360 fbfea952729237892dda44226b230d16 109 Pfam PF04355 SmpA / OmlA family 29 96 5.6E-16 T 29-03-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 AM354_RS23360 fbfea952729237892dda44226b230d16 109 Gene3D G3DSA:3.30.1450.10 31 104 4.4E-7 T 29-03-2018 AM354_RS19295 c9f5eb88faacf9d8a60be1a297773ce9 387 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 8 383 38.91 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS19295 c9f5eb88faacf9d8a60be1a297773ce9 387 Pfam PF00162 Phosphoglycerate kinase 6 373 1.4E-138 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS19295 c9f5eb88faacf9d8a60be1a297773ce9 387 PIRSF PIRSF000724 1 387 6.5E-131 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS19295 c9f5eb88faacf9d8a60be1a297773ce9 387 PRINTS PR00477 Phosphoglycerate kinase family signature 31 53 8.1E-83 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS19295 c9f5eb88faacf9d8a60be1a297773ce9 387 PRINTS PR00477 Phosphoglycerate kinase family signature 10 26 8.1E-83 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS19295 c9f5eb88faacf9d8a60be1a297773ce9 387 PRINTS PR00477 Phosphoglycerate kinase family signature 336 347 8.1E-83 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS19295 c9f5eb88faacf9d8a60be1a297773ce9 387 PRINTS PR00477 Phosphoglycerate kinase family signature 359 376 8.1E-83 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS19295 c9f5eb88faacf9d8a60be1a297773ce9 387 PRINTS PR00477 Phosphoglycerate kinase family signature 132 154 8.1E-83 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS19295 c9f5eb88faacf9d8a60be1a297773ce9 387 PRINTS PR00477 Phosphoglycerate kinase family signature 163 185 8.1E-83 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS19295 c9f5eb88faacf9d8a60be1a297773ce9 387 PRINTS PR00477 Phosphoglycerate kinase family signature 186 205 8.1E-83 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS19295 c9f5eb88faacf9d8a60be1a297773ce9 387 PRINTS PR00477 Phosphoglycerate kinase family signature 104 119 8.1E-83 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS19295 c9f5eb88faacf9d8a60be1a297773ce9 387 PRINTS PR00477 Phosphoglycerate kinase family signature 303 328 8.1E-83 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS19295 c9f5eb88faacf9d8a60be1a297773ce9 387 Gene3D G3DSA:3.40.50.1260 175 371 1.1E-73 T 29-03-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS19295 c9f5eb88faacf9d8a60be1a297773ce9 387 SUPERFAMILY SSF53748 3 383 5.65E-143 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS19295 c9f5eb88faacf9d8a60be1a297773ce9 387 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 15 25 - T 29-03-2018 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS19295 c9f5eb88faacf9d8a60be1a297773ce9 387 Gene3D G3DSA:3.40.50.1260 3 174 2.1E-62 T 29-03-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS19395 b03620420db4c1e6c43ad3d3da5d1b30 272 Pfam PF09339 IclR helix-turn-helix domain 21 71 6.6E-13 T 29-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AM354_RS19395 b03620420db4c1e6c43ad3d3da5d1b30 272 SUPERFAMILY SSF55781 86 268 2.29E-46 T 29-03-2018 IPR029016 GAF domain-like AM354_RS19395 b03620420db4c1e6c43ad3d3da5d1b30 272 SUPERFAMILY SSF46785 20 93 3.16E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS19395 b03620420db4c1e6c43ad3d3da5d1b30 272 Gene3D G3DSA:1.10.10.10 2 80 7.1E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS19395 b03620420db4c1e6c43ad3d3da5d1b30 272 SMART SM00346 19 109 1.9E-38 T 29-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AM354_RS19395 b03620420db4c1e6c43ad3d3da5d1b30 272 Pfam PF01614 Bacterial transcriptional regulator 139 264 1.4E-41 T 29-03-2018 IPR014757 Transcription regulator IclR, C-terminal AM354_RS19395 b03620420db4c1e6c43ad3d3da5d1b30 272 Gene3D G3DSA:3.30.450.40 87 271 2.1E-46 T 29-03-2018 IPR029016 GAF domain-like AM354_RS24290 dc87d3ce6e296304dd76ff82b8dc50a0 195 SUPERFAMILY SSF55469 6 188 2.09E-41 T 29-03-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AM354_RS24290 dc87d3ce6e296304dd76ff82b8dc50a0 195 Gene3D G3DSA:3.40.109.10 1 191 4.6E-35 T 29-03-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AM354_RS24290 dc87d3ce6e296304dd76ff82b8dc50a0 195 Pfam PF00881 Nitroreductase family 17 56 1.1E-8 T 29-03-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 AM354_RS24290 dc87d3ce6e296304dd76ff82b8dc50a0 195 Pfam PF00881 Nitroreductase family 80 160 6.2E-6 T 29-03-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 AM354_RS02160 a54306ba2b76114140ae190af5a22aa9 147 Gene3D G3DSA:1.10.1660.10 57 145 1.6E-7 T 29-03-2018 AM354_RS02160 a54306ba2b76114140ae190af5a22aa9 147 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 5.1E-11 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS02160 a54306ba2b76114140ae190af5a22aa9 147 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 5.1E-11 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS02160 a54306ba2b76114140ae190af5a22aa9 147 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 5.1E-11 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS02160 a54306ba2b76114140ae190af5a22aa9 147 SMART SM00422 1 70 1.8E-27 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS02160 a54306ba2b76114140ae190af5a22aa9 147 Gene3D G3DSA:1.10.1660.10 1 56 4.9E-21 T 29-03-2018 AM354_RS02160 a54306ba2b76114140ae190af5a22aa9 147 SUPERFAMILY SSF46955 1 104 1.36E-25 T 29-03-2018 IPR009061 Putative DNA-binding domain AM354_RS02160 a54306ba2b76114140ae190af5a22aa9 147 Pfam PF13411 MerR HTH family regulatory protein 1 68 1.3E-17 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS16575 01cd25450ed41cd5635b03ddab871bb1 222 SUPERFAMILY SSF47616 83 217 3.62E-25 T 29-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like AM354_RS16575 01cd25450ed41cd5635b03ddab871bb1 222 Pfam PF14497 Glutathione S-transferase, C-terminal domain 139 209 1.4E-8 T 29-03-2018 IPR004046 Glutathione S-transferase, C-terminal AM354_RS16575 01cd25450ed41cd5635b03ddab871bb1 222 Gene3D G3DSA:1.20.1050.10 99 219 1.1E-26 T 29-03-2018 AM354_RS16575 01cd25450ed41cd5635b03ddab871bb1 222 Gene3D G3DSA:3.40.30.10 1 98 3.0E-25 T 29-03-2018 AM354_RS16575 01cd25450ed41cd5635b03ddab871bb1 222 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 74 4.5E-16 T 29-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AM354_RS16575 01cd25450ed41cd5635b03ddab871bb1 222 SUPERFAMILY SSF52833 2 78 1.84E-20 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS02380 946e6ff6c869ac9097044578e110eeac 295 Gene3D G3DSA:3.40.190.10 174 263 1.3E-20 T 29-03-2018 AM354_RS02380 946e6ff6c869ac9097044578e110eeac 295 Gene3D G3DSA:3.40.190.10 85 173 5.2E-11 T 29-03-2018 AM354_RS02380 946e6ff6c869ac9097044578e110eeac 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 63 8.4E-17 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS02380 946e6ff6c869ac9097044578e110eeac 295 SUPERFAMILY SSF53850 89 292 4.16E-40 T 29-03-2018 AM354_RS02380 946e6ff6c869ac9097044578e110eeac 295 Gene3D G3DSA:1.10.10.10 3 84 3.1E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS02380 946e6ff6c869ac9097044578e110eeac 295 SUPERFAMILY SSF46785 6 87 8.55E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS02380 946e6ff6c869ac9097044578e110eeac 295 Pfam PF03466 LysR substrate binding domain 88 291 1.3E-40 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS06920 443fc2d0bf7aadfc3dda07279e2031ae 302 SUPERFAMILY SSF103481 188 287 7.45E-15 T 29-03-2018 AM354_RS06920 443fc2d0bf7aadfc3dda07279e2031ae 302 Pfam PF00892 EamA-like transporter family 12 139 1.6E-13 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM354_RS06920 443fc2d0bf7aadfc3dda07279e2031ae 302 Pfam PF00892 EamA-like transporter family 154 283 2.8E-16 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM354_RS06920 443fc2d0bf7aadfc3dda07279e2031ae 302 SUPERFAMILY SSF103481 39 143 2.09E-16 T 29-03-2018 AM354_RS14900 909a6ab4141e1201b0e41b8f09e86ee0 153 SUPERFAMILY SSF54197 1 149 1.13E-27 T 29-03-2018 IPR011146 HIT-like domain GO:0003824 AM354_RS14900 909a6ab4141e1201b0e41b8f09e86ee0 153 Gene3D G3DSA:3.30.428.10 1 152 7.0E-28 T 29-03-2018 IPR011146 HIT-like domain GO:0003824 AM354_RS14900 909a6ab4141e1201b0e41b8f09e86ee0 153 Pfam PF01230 HIT domain 12 99 3.2E-10 T 29-03-2018 IPR001310 Histidine triad (HIT) protein AM354_RS14900 909a6ab4141e1201b0e41b8f09e86ee0 153 PRINTS PR00332 Histidine triad family signature 4 20 1.1E-7 T 29-03-2018 IPR001310 Histidine triad (HIT) protein AM354_RS14900 909a6ab4141e1201b0e41b8f09e86ee0 153 PRINTS PR00332 Histidine triad family signature 25 43 1.1E-7 T 29-03-2018 IPR001310 Histidine triad (HIT) protein AM354_RS14900 909a6ab4141e1201b0e41b8f09e86ee0 153 PRINTS PR00332 Histidine triad family signature 89 99 1.1E-7 T 29-03-2018 IPR001310 Histidine triad (HIT) protein AM354_RS17715 d5a29a882e424c7c008d7bd00c386c26 441 SUPERFAMILY SSF51905 1 297 1.65E-51 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS17715 d5a29a882e424c7c008d7bd00c386c26 441 Gene3D G3DSA:3.50.50.60 103 235 1.4E-30 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS17715 d5a29a882e424c7c008d7bd00c386c26 441 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 411 431 7.8E-49 T 29-03-2018 AM354_RS17715 d5a29a882e424c7c008d7bd00c386c26 441 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 244 258 7.8E-49 T 29-03-2018 AM354_RS17715 d5a29a882e424c7c008d7bd00c386c26 441 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 7.8E-49 T 29-03-2018 AM354_RS17715 d5a29a882e424c7c008d7bd00c386c26 441 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 160 185 7.8E-49 T 29-03-2018 AM354_RS17715 d5a29a882e424c7c008d7bd00c386c26 441 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 287 294 7.8E-49 T 29-03-2018 AM354_RS17715 d5a29a882e424c7c008d7bd00c386c26 441 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 123 132 7.8E-49 T 29-03-2018 AM354_RS17715 d5a29a882e424c7c008d7bd00c386c26 441 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 324 345 7.8E-49 T 29-03-2018 AM354_RS17715 d5a29a882e424c7c008d7bd00c386c26 441 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 39 54 7.8E-49 T 29-03-2018 AM354_RS17715 d5a29a882e424c7c008d7bd00c386c26 441 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 389 404 7.8E-49 T 29-03-2018 AM354_RS17715 d5a29a882e424c7c008d7bd00c386c26 441 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 297 5.6E-58 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS17715 d5a29a882e424c7c008d7bd00c386c26 441 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 328 434 5.6E-29 T 29-03-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AM354_RS17715 d5a29a882e424c7c008d7bd00c386c26 441 Gene3D G3DSA:3.30.390.30 342 440 1.9E-31 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AM354_RS17715 d5a29a882e424c7c008d7bd00c386c26 441 PIRSF PIRSF000350 1 438 4.8E-94 T 29-03-2018 AM354_RS17715 d5a29a882e424c7c008d7bd00c386c26 441 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 1.4E-27 T 29-03-2018 AM354_RS17715 d5a29a882e424c7c008d7bd00c386c26 441 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 120 138 1.4E-27 T 29-03-2018 AM354_RS17715 d5a29a882e424c7c008d7bd00c386c26 441 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 272 294 1.4E-27 T 29-03-2018 AM354_RS17715 d5a29a882e424c7c008d7bd00c386c26 441 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 160 178 1.4E-27 T 29-03-2018 AM354_RS17715 d5a29a882e424c7c008d7bd00c386c26 441 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 243 259 1.4E-27 T 29-03-2018 AM354_RS17715 d5a29a882e424c7c008d7bd00c386c26 441 Gene3D G3DSA:1.10.287.990 40 89 4.4E-9 T 29-03-2018 AM354_RS17715 d5a29a882e424c7c008d7bd00c386c26 441 Gene3D G3DSA:3.40.50.720 2 39 8.6E-4 T 29-03-2018 AM354_RS17715 d5a29a882e424c7c008d7bd00c386c26 441 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 40 50 - T 29-03-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 AM354_RS17715 d5a29a882e424c7c008d7bd00c386c26 441 SUPERFAMILY SSF55424 324 437 2.41E-33 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AM354_RS17715 d5a29a882e424c7c008d7bd00c386c26 441 Gene3D G3DSA:3.50.50.60 243 341 4.2E-7 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS23895 a982c11a0aac54f8fc4772ed48b172e4 264 Gene3D G3DSA:3.40.50.300 19 239 5.7E-16 T 29-03-2018 AM354_RS23895 a982c11a0aac54f8fc4772ed48b172e4 264 SUPERFAMILY SSF52540 20 241 4.37E-12 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS21785 a9166e8ff64edec3ec4085ef7e3ffa4a 450 Gene3D G3DSA:3.20.20.70 7 171 1.5E-4 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS21785 a9166e8ff64edec3ec4085ef7e3ffa4a 450 Pfam PF01136 Peptidase family U32 76 343 2.0E-95 T 29-03-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 AM354_RS21785 a9166e8ff64edec3ec4085ef7e3ffa4a 450 Pfam PF16325 Peptidase family U32 C-terminal domain 359 440 2.4E-23 T 29-03-2018 IPR032525 Peptidase family U32, C-terminal AM354_RS21785 a9166e8ff64edec3ec4085ef7e3ffa4a 450 ProSitePatterns PS01276 Peptidase family U32 signature. 162 180 - T 29-03-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 AM354_RS07615 ce18cafb1db08b297fd6dc6d8cc0ff9c 434 Gene3D G3DSA:1.20.1250.20 8 204 1.3E-32 T 29-03-2018 AM354_RS07615 ce18cafb1db08b297fd6dc6d8cc0ff9c 434 Pfam PF07690 Major Facilitator Superfamily 25 385 1.5E-45 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS07615 ce18cafb1db08b297fd6dc6d8cc0ff9c 434 SUPERFAMILY SSF103473 11 419 3.27E-72 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS07615 ce18cafb1db08b297fd6dc6d8cc0ff9c 434 PIRSF PIRSF002808 2 434 5.8E-120 T 29-03-2018 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 AM354_RS07615 ce18cafb1db08b297fd6dc6d8cc0ff9c 434 Gene3D G3DSA:1.20.1250.20 228 433 8.3E-24 T 29-03-2018 AM354_RS21300 2eb82d91bab1eda7b9717c11b05ef7e4 424 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 3 421 33.723 T 29-03-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 AM354_RS21300 2eb82d91bab1eda7b9717c11b05ef7e4 424 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 6 411 6.4E-158 T 29-03-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 AM354_RS21300 2eb82d91bab1eda7b9717c11b05ef7e4 424 Gene3D G3DSA:3.30.930.10 2 325 4.1E-76 T 29-03-2018 AM354_RS21300 2eb82d91bab1eda7b9717c11b05ef7e4 424 PIRSF PIRSF001549 2 421 3.3E-128 T 29-03-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 AM354_RS21300 2eb82d91bab1eda7b9717c11b05ef7e4 424 Pfam PF03129 Anticodon binding domain 330 419 3.2E-10 T 29-03-2018 IPR004154 Anticodon-binding AM354_RS21300 2eb82d91bab1eda7b9717c11b05ef7e4 424 Pfam PF13393 Histidyl-tRNA synthetase 10 312 9.3E-48 T 29-03-2018 AM354_RS21300 2eb82d91bab1eda7b9717c11b05ef7e4 424 SUPERFAMILY SSF52954 327 420 9.98E-24 T 29-03-2018 IPR004154 Anticodon-binding AM354_RS21300 2eb82d91bab1eda7b9717c11b05ef7e4 424 Gene3D G3DSA:3.40.50.800 326 424 2.8E-17 T 29-03-2018 IPR004154 Anticodon-binding AM354_RS21300 2eb82d91bab1eda7b9717c11b05ef7e4 424 SUPERFAMILY SSF55681 5 318 1.13E-105 T 29-03-2018 AM354_RS14255 3a0ff3b9a8920dfdc3cc2689031d3fec 703 Gene3D G3DSA:3.30.70.260 624 702 1.8E-9 T 29-03-2018 AM354_RS14255 3a0ff3b9a8920dfdc3cc2689031d3fec 703 Pfam PF04607 Region found in RelA / SpoT proteins 235 345 2.3E-36 T 29-03-2018 IPR007685 RelA/SpoT GO:0015969 AM354_RS14255 3a0ff3b9a8920dfdc3cc2689031d3fec 703 SUPERFAMILY SSF55021 630 700 4.4E-5 T 29-03-2018 AM354_RS14255 3a0ff3b9a8920dfdc3cc2689031d3fec 703 Gene3D G3DSA:3.30.460.10 192 325 6.4E-41 T 29-03-2018 AM354_RS14255 3a0ff3b9a8920dfdc3cc2689031d3fec 703 Pfam PF13328 HD domain 26 175 1.2E-54 T 29-03-2018 IPR003607 HD/PDEase domain AM354_RS14255 3a0ff3b9a8920dfdc3cc2689031d3fec 703 SUPERFAMILY SSF109604 3 190 1.38E-75 T 29-03-2018 AM354_RS14255 3a0ff3b9a8920dfdc3cc2689031d3fec 703 SUPERFAMILY SSF81271 377 449 8.07E-21 T 29-03-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 AM354_RS14255 3a0ff3b9a8920dfdc3cc2689031d3fec 703 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 26 700 3.6E-287 T 29-03-2018 IPR004811 RelA/SpoT family GO:0015969 AM354_RS14255 3a0ff3b9a8920dfdc3cc2689031d3fec 703 SUPERFAMILY SSF81301 192 366 1.8E-62 T 29-03-2018 AM354_RS14255 3a0ff3b9a8920dfdc3cc2689031d3fec 703 Pfam PF02824 TGS domain 390 449 1.3E-20 T 29-03-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 AM354_RS14255 3a0ff3b9a8920dfdc3cc2689031d3fec 703 SMART SM00954 235 345 8.0E-63 T 29-03-2018 IPR007685 RelA/SpoT GO:0015969 AM354_RS14255 3a0ff3b9a8920dfdc3cc2689031d3fec 703 Gene3D G3DSA:3.10.20.30 384 459 4.5E-23 T 29-03-2018 IPR012675 Beta-grasp domain AM354_RS14255 3a0ff3b9a8920dfdc3cc2689031d3fec 703 SMART SM00471 41 153 5.9E-12 T 29-03-2018 IPR003607 HD/PDEase domain AM354_RS14255 3a0ff3b9a8920dfdc3cc2689031d3fec 703 Pfam PF13291 ACT domain 623 700 2.4E-15 T 29-03-2018 IPR002912 ACT domain AM354_RS16190 b2917c5c3c54f43d39818ef158929a9d 181 SUPERFAMILY SSF57783 60 100 2.21E-13 T 29-03-2018 AM354_RS16190 b2917c5c3c54f43d39818ef158929a9d 181 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 13 49 2.8E-16 T 29-03-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 AM354_RS16190 b2917c5c3c54f43d39818ef158929a9d 181 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 104 142 8.5E-15 T 29-03-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 AM354_RS16190 b2917c5c3c54f43d39818ef158929a9d 181 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 62 98 3.4E-16 T 29-03-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 AM354_RS16190 b2917c5c3c54f43d39818ef158929a9d 181 SUPERFAMILY SSF57783 12 50 4.93E-14 T 29-03-2018 AM354_RS16190 b2917c5c3c54f43d39818ef158929a9d 181 Gene3D G3DSA:3.30.65.10 57 100 3.9E-16 T 29-03-2018 AM354_RS16190 b2917c5c3c54f43d39818ef158929a9d 181 Gene3D G3DSA:3.30.65.10 3 56 4.7E-18 T 29-03-2018 AM354_RS16190 b2917c5c3c54f43d39818ef158929a9d 181 Gene3D G3DSA:3.30.65.10 101 146 3.7E-12 T 29-03-2018 AM354_RS09880 dad0a08bdcbad71fd5a71e81553ea93f 342 TIGRFAM TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 8 328 6.2E-124 T 29-03-2018 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 AM354_RS09880 dad0a08bdcbad71fd5a71e81553ea93f 342 Gene3D G3DSA:1.20.120.420 2 130 3.2E-34 T 29-03-2018 IPR027363 Methylthioribose-1-phosphate isomerase-like, N-terminal domain KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174 AM354_RS09880 dad0a08bdcbad71fd5a71e81553ea93f 342 Hamap MF_01678 Putative methylthioribose-1-phosphate isomerase [mtnA]. 5 340 36.467 T 29-03-2018 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 AM354_RS09880 dad0a08bdcbad71fd5a71e81553ea93f 342 Pfam PF01008 Initiation factor 2 subunit family 48 329 2.7E-65 T 29-03-2018 IPR000649 Initiation factor 2B-related GO:0044237 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174 AM354_RS09880 dad0a08bdcbad71fd5a71e81553ea93f 342 Gene3D G3DSA:3.40.50.10470 131 338 2.6E-69 T 29-03-2018 AM354_RS09880 dad0a08bdcbad71fd5a71e81553ea93f 342 SUPERFAMILY SSF100950 9 333 9.07E-111 T 29-03-2018 AM354_RS09880 dad0a08bdcbad71fd5a71e81553ea93f 342 TIGRFAM TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 33 329 4.5E-92 T 29-03-2018 IPR011559 Initiation factor 2B alpha/beta/delta GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 AM354_RS06810 7905c0b19b43dc05ab47576998170ca7 183 Pfam PF01202 Shikimate kinase 9 35 6.3E-5 T 29-03-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 AM354_RS06810 7905c0b19b43dc05ab47576998170ca7 183 Gene3D G3DSA:3.40.50.300 2 171 2.6E-16 T 29-03-2018 AM354_RS06810 7905c0b19b43dc05ab47576998170ca7 183 SUPERFAMILY SSF52540 2 104 1.56E-16 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS06845 744de917886c8a3a49e48d929425db9a 434 SMART SM00283 238 434 1.8E-11 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM354_RS06845 744de917886c8a3a49e48d929425db9a 434 SUPERFAMILY SSF58104 215 426 2.22E-49 T 29-03-2018 AM354_RS06845 744de917886c8a3a49e48d929425db9a 434 SUPERFAMILY SSF55785 142 246 6.12E-24 T 29-03-2018 IPR000014 PAS domain AM354_RS06845 744de917886c8a3a49e48d929425db9a 434 SUPERFAMILY SSF55785 23 127 1.31E-22 T 29-03-2018 IPR000014 PAS domain AM354_RS06845 744de917886c8a3a49e48d929425db9a 434 Pfam PF08448 PAS fold 145 248 4.2E-16 T 29-03-2018 IPR013656 PAS fold-4 AM354_RS06845 744de917886c8a3a49e48d929425db9a 434 Gene3D G3DSA:3.40.50.10600 6 127 1.1E-25 T 29-03-2018 AM354_RS06845 744de917886c8a3a49e48d929425db9a 434 Gene3D G3DSA:3.40.50.10600 128 247 1.3E-28 T 29-03-2018 AM354_RS06845 744de917886c8a3a49e48d929425db9a 434 Pfam PF08447 PAS fold 35 121 2.4E-13 T 29-03-2018 IPR013655 PAS fold-3 GO:0005515 AM354_RS06845 744de917886c8a3a49e48d929425db9a 434 Gene3D G3DSA:1.10.287.950 248 429 6.0E-40 T 29-03-2018 AM354_RS06845 744de917886c8a3a49e48d929425db9a 434 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 267 425 2.9E-33 T 29-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM354_RS06845 744de917886c8a3a49e48d929425db9a 434 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 139 254 2.2E-18 T 29-03-2018 IPR000014 PAS domain AM354_RS06845 744de917886c8a3a49e48d929425db9a 434 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 18 133 1.2E-13 T 29-03-2018 IPR000014 PAS domain AM354_RS06845 744de917886c8a3a49e48d929425db9a 434 SMART SM00086 207 249 8.4E-5 T 29-03-2018 IPR001610 PAC motif AM354_RS06845 744de917886c8a3a49e48d929425db9a 434 SMART SM00086 85 127 0.0077 T 29-03-2018 IPR001610 PAC motif AM354_RS06845 744de917886c8a3a49e48d929425db9a 434 SMART SM00091 11 79 1.4 T 29-03-2018 IPR000014 PAS domain AM354_RS06845 744de917886c8a3a49e48d929425db9a 434 SMART SM00091 132 202 2.3E-5 T 29-03-2018 IPR000014 PAS domain AM354_RS00695 0229f62f5f45cc292a02dc62b93aabe4 501 Pfam PF17289 Terminase RNaseH-like domain 320 471 8.7E-27 T 29-03-2018 IPR035421 Terminase, large subunit gp17-like AM354_RS00695 0229f62f5f45cc292a02dc62b93aabe4 501 Pfam PF03237 Terminase-like family 58 304 3.0E-53 T 29-03-2018 AM354_RS01540 f6d7f031bcd4029657811a5441a387da 304 PIRSF PIRSF028756 16 304 1.5E-133 T 29-03-2018 IPR016898 Polyphosphate kinase 2 AM354_RS01540 f6d7f031bcd4029657811a5441a387da 304 Gene3D G3DSA:3.40.50.300 10 294 2.5E-113 T 29-03-2018 AM354_RS01540 f6d7f031bcd4029657811a5441a387da 304 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 51 274 6.7E-112 T 29-03-2018 IPR022488 Polyphosphate kinase-2-related AM354_RS01540 f6d7f031bcd4029657811a5441a387da 304 SUPERFAMILY SSF52540 80 269 7.58E-31 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS01540 f6d7f031bcd4029657811a5441a387da 304 TIGRFAM TIGR03707 PPK2_P_aer: polyphosphate kinase 2 51 274 2.2E-113 T 29-03-2018 IPR022486 Polyphosphate kinase 2, PA0141 GO:0006793|GO:0008976 AM354_RS03060 bfbd7a89b78458b9eba1b2bcf0f81156 298 Gene3D G3DSA:3.20.20.100 1 298 5.0E-63 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS03060 bfbd7a89b78458b9eba1b2bcf0f81156 298 SUPERFAMILY SSF51430 3 295 1.57E-72 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS03060 bfbd7a89b78458b9eba1b2bcf0f81156 298 PRINTS PR00069 Aldo-keto reductase signature 112 130 7.2E-7 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM354_RS03060 bfbd7a89b78458b9eba1b2bcf0f81156 298 PRINTS PR00069 Aldo-keto reductase signature 143 160 7.2E-7 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM354_RS03060 bfbd7a89b78458b9eba1b2bcf0f81156 298 Pfam PF00248 Aldo/keto reductase family 17 291 1.2E-59 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS17140 ed43662e8e56fee0040f688111e36738 124 Hamap MF_00904 Modulator protein MzrA [mzrA]. 1 114 27.502 T 29-03-2018 IPR026574 Modulator protein MzrA AM354_RS17140 ed43662e8e56fee0040f688111e36738 124 Pfam PF13721 SecD export protein N-terminal TM region 4 103 9.8E-23 T 29-03-2018 IPR027398 SecD export protein N-terminal TM domain AM354_RS12335 f6aac33973cd780c49c32dd74ee29f4d 627 SUPERFAMILY SSF55874 1 203 1.11E-56 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS12335 f6aac33973cd780c49c32dd74ee29f4d 627 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 214 329 7.3E-38 T 29-03-2018 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 AM354_RS12335 f6aac33973cd780c49c32dd74ee29f4d 627 SUPERFAMILY SSF118116 445 625 8.37E-44 T 29-03-2018 AM354_RS12335 f6aac33973cd780c49c32dd74ee29f4d 627 SMART SM00853 450 585 2.1E-14 T 29-03-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 AM354_RS12335 f6aac33973cd780c49c32dd74ee29f4d 627 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 24 122 2.9E-12 T 29-03-2018 AM354_RS12335 f6aac33973cd780c49c32dd74ee29f4d 627 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 1 624 25.854 T 29-03-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 AM354_RS12335 f6aac33973cd780c49c32dd74ee29f4d 627 Gene3D G3DSA:3.30.230.10 217 329 3.6E-30 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AM354_RS12335 f6aac33973cd780c49c32dd74ee29f4d 627 SUPERFAMILY SSF54211 191 330 6.45E-36 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM354_RS12335 f6aac33973cd780c49c32dd74ee29f4d 627 Gene3D G3DSA:3.30.565.10 1 216 1.8E-35 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS12335 f6aac33973cd780c49c32dd74ee29f4d 627 SMART SM01340 212 330 1.6E-54 T 29-03-2018 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 AM354_RS12335 f6aac33973cd780c49c32dd74ee29f4d 627 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 1 310 1.2E-100 T 29-03-2018 IPR002099 DNA mismatch repair protein family GO:0005524|GO:0006298|GO:0030983 AM354_RS12335 f6aac33973cd780c49c32dd74ee29f4d 627 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 93 99 - T 29-03-2018 IPR014762 DNA mismatch repair, conserved site AM354_RS12335 f6aac33973cd780c49c32dd74ee29f4d 627 Pfam PF08676 MutL C terminal dimerisation domain 447 574 2.2E-25 T 29-03-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 AM354_RS14780 a18395db89b04094febc17792faac34b 514 Gene3D G3DSA:3.40.50.1100 37 148 8.9E-31 T 29-03-2018 AM354_RS14780 a18395db89b04094febc17792faac34b 514 Gene3D G3DSA:3.40.1020.10 338 513 5.4E-73 T 29-03-2018 AM354_RS14780 a18395db89b04094febc17792faac34b 514 TIGRFAM TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 15 512 4.3E-264 T 29-03-2018 IPR005787 Threonine dehydratase, biosynthetic GO:0004794|GO:0009097 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 AM354_RS14780 a18395db89b04094febc17792faac34b 514 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 53 66 - T 29-03-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 AM354_RS14780 a18395db89b04094febc17792faac34b 514 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 329 419 2.8E-29 T 29-03-2018 IPR001721 ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 AM354_RS14780 a18395db89b04094febc17792faac34b 514 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 425 512 7.2E-26 T 29-03-2018 IPR001721 ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 AM354_RS14780 a18395db89b04094febc17792faac34b 514 SUPERFAMILY SSF55021 336 423 2.75E-28 T 29-03-2018 AM354_RS14780 a18395db89b04094febc17792faac34b 514 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 29 316 1.6E-78 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM354_RS14780 a18395db89b04094febc17792faac34b 514 Gene3D G3DSA:3.40.50.1100 149 329 4.0E-47 T 29-03-2018 AM354_RS14780 a18395db89b04094febc17792faac34b 514 SUPERFAMILY SSF53686 15 365 1.44E-101 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM354_RS14780 a18395db89b04094febc17792faac34b 514 SUPERFAMILY SSF55021 420 512 1.26E-25 T 29-03-2018 AM354_RS00810 58fd07b6f14bd0a66613bdd0482e8bde 210 Pfam PF03922 OmpW family 22 210 8.4E-64 T 29-03-2018 IPR005618 Outer membrane protein, OmpW GO:0019867 AM354_RS00810 58fd07b6f14bd0a66613bdd0482e8bde 210 SUPERFAMILY SSF56925 22 210 4.71E-29 T 29-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AM354_RS00810 58fd07b6f14bd0a66613bdd0482e8bde 210 ProSitePatterns PS00695 Enterobacterial virulence outer membrane protein signature 2. 202 210 - T 29-03-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 AM354_RS00810 58fd07b6f14bd0a66613bdd0482e8bde 210 Gene3D G3DSA:2.40.160.20 21 210 6.5E-36 T 29-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AM354_RS00010 149deee2afb8c210ea9d48d1553465ee 323 TIGRFAM TIGR00452 TIGR00452: tRNA (mo5U34)-methyltransferase 7 321 3.1E-144 T 29-03-2018 IPR010017 tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 AM354_RS00010 149deee2afb8c210ea9d48d1553465ee 323 SUPERFAMILY SSF53335 89 316 7.11E-32 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS00010 149deee2afb8c210ea9d48d1553465ee 323 Gene3D G3DSA:3.40.50.150 88 323 3.4E-22 T 29-03-2018 AM354_RS00010 149deee2afb8c210ea9d48d1553465ee 323 Hamap MF_01590 tRNA U34 carboxymethyltransferase [cmoB]. 12 322 53.332 T 29-03-2018 IPR010017 tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 AM354_RS00010 149deee2afb8c210ea9d48d1553465ee 323 Pfam PF08003 Protein of unknown function (DUF1698) 7 322 9.9E-165 T 29-03-2018 IPR027555 tRNA (mo5U34)-methyltransferase-like AM354_RS23155 20187b42b380cd87429c80958c5d9bdc 325 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 211 224 - T 29-03-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23155 20187b42b380cd87429c80958c5d9bdc 325 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 56 71 - T 29-03-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23155 20187b42b380cd87429c80958c5d9bdc 325 Pfam PF00146 NADH dehydrogenase 17 316 4.6E-119 T 29-03-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23155 20187b42b380cd87429c80958c5d9bdc 325 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 10 323 23.772 T 29-03-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS22890 b6ecdd40183362e647a1fb81d24baeee 488 Pfam PF00155 Aminotransferase class I and II 130 474 1.8E-29 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM354_RS22890 b6ecdd40183362e647a1fb81d24baeee 488 Gene3D G3DSA:3.90.1150.10 381 482 6.9E-27 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS22890 b6ecdd40183362e647a1fb81d24baeee 488 Gene3D G3DSA:3.40.640.10 133 380 1.7E-48 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS22890 b6ecdd40183362e647a1fb81d24baeee 488 SUPERFAMILY SSF53383 102 481 3.58E-98 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS22890 b6ecdd40183362e647a1fb81d24baeee 488 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 76 3.2E-16 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS22890 b6ecdd40183362e647a1fb81d24baeee 488 SMART SM00345 17 76 1.2E-14 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS22890 b6ecdd40183362e647a1fb81d24baeee 488 SUPERFAMILY SSF46785 6 85 2.59E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS22890 b6ecdd40183362e647a1fb81d24baeee 488 Gene3D G3DSA:1.10.10.10 4 78 4.4E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS22890 b6ecdd40183362e647a1fb81d24baeee 488 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 5.5E-6 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS22890 b6ecdd40183362e647a1fb81d24baeee 488 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 5.5E-6 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS02805 0e3b661936fd160275ec626ef8adb1ea 392 PRINTS PR00714 Phosphomannose isomerase type I signature 32 47 6.1E-72 T 29-03-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-446205 AM354_RS02805 0e3b661936fd160275ec626ef8adb1ea 392 PRINTS PR00714 Phosphomannose isomerase type I signature 236 255 6.1E-72 T 29-03-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-446205 AM354_RS02805 0e3b661936fd160275ec626ef8adb1ea 392 PRINTS PR00714 Phosphomannose isomerase type I signature 274 293 6.1E-72 T 29-03-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-446205 AM354_RS02805 0e3b661936fd160275ec626ef8adb1ea 392 PRINTS PR00714 Phosphomannose isomerase type I signature 126 149 6.1E-72 T 29-03-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-446205 AM354_RS02805 0e3b661936fd160275ec626ef8adb1ea 392 PRINTS PR00714 Phosphomannose isomerase type I signature 4 22 6.1E-72 T 29-03-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-446205 AM354_RS02805 0e3b661936fd160275ec626ef8adb1ea 392 PRINTS PR00714 Phosphomannose isomerase type I signature 81 102 6.1E-72 T 29-03-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-446205 AM354_RS02805 0e3b661936fd160275ec626ef8adb1ea 392 PRINTS PR00714 Phosphomannose isomerase type I signature 220 235 6.1E-72 T 29-03-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-446205 AM354_RS02805 0e3b661936fd160275ec626ef8adb1ea 392 PRINTS PR00714 Phosphomannose isomerase type I signature 255 274 6.1E-72 T 29-03-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-446205 AM354_RS02805 0e3b661936fd160275ec626ef8adb1ea 392 Gene3D G3DSA:2.60.120.10 5 160 3.1E-51 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS02805 0e3b661936fd160275ec626ef8adb1ea 392 ProSitePatterns PS00965 Phosphomannose isomerase type I signature 1. 126 134 - T 29-03-2018 IPR018050 Phosphomannose isomerase, type I, conserved site GO:0004476 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-446205 AM354_RS02805 0e3b661936fd160275ec626ef8adb1ea 392 SUPERFAMILY SSF51182 1 374 4.99E-101 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS02805 0e3b661936fd160275ec626ef8adb1ea 392 Gene3D G3DSA:2.60.120.10 295 391 1.4E-18 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS02805 0e3b661936fd160275ec626ef8adb1ea 392 TIGRFAM TIGR00218 manA: mannose-6-phosphate isomerase, class I 2 385 1.6E-116 T 29-03-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-446205 AM354_RS02805 0e3b661936fd160275ec626ef8adb1ea 392 Pfam PF01238 Phosphomannose isomerase type I 1 356 9.3E-100 T 29-03-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-446205 AM354_RS02805 0e3b661936fd160275ec626ef8adb1ea 392 Gene3D G3DSA:1.10.441.10 161 262 1.8E-26 T 29-03-2018 AM354_RS02805 0e3b661936fd160275ec626ef8adb1ea 392 PIRSF PIRSF001480 1 392 2.6E-106 T 29-03-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-446205 AM354_RS02805 0e3b661936fd160275ec626ef8adb1ea 392 ProSitePatterns PS00966 Phosphomannose isomerase type I signature 2. 255 280 - T 29-03-2018 IPR018050 Phosphomannose isomerase, type I, conserved site GO:0004476 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-446205 AM354_RS02420 b56ac4ed25b90cbd1379042fc3b0af26 572 Gene3D G3DSA:3.90.1310.10 29 228 1.0E-39 T 29-03-2018 AM354_RS02420 b56ac4ed25b90cbd1379042fc3b0af26 572 Pfam PF03717 Penicillin-binding Protein dimerisation domain 61 214 1.9E-16 T 29-03-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AM354_RS02420 b56ac4ed25b90cbd1379042fc3b0af26 572 SUPERFAMILY SSF56519 55 227 1.7E-37 T 29-03-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AM354_RS02420 b56ac4ed25b90cbd1379042fc3b0af26 572 Pfam PF00905 Penicillin binding protein transpeptidase domain 253 548 2.8E-70 T 29-03-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AM354_RS02420 b56ac4ed25b90cbd1379042fc3b0af26 572 SUPERFAMILY SSF56601 229 563 1.54E-77 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM354_RS02420 b56ac4ed25b90cbd1379042fc3b0af26 572 Gene3D G3DSA:3.40.710.10 229 571 1.0E-68 T 29-03-2018 AM354_RS23750 7f4319e2ca10d1db02dff4c86f68da02 369 SUPERFAMILY SSF51735 318 353 4.44E-32 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS23750 7f4319e2ca10d1db02dff4c86f68da02 369 SUPERFAMILY SSF51735 1 288 4.44E-32 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS23750 7f4319e2ca10d1db02dff4c86f68da02 369 Pfam PF07993 Male sterility protein 6 237 2.4E-35 T 29-03-2018 IPR013120 Male sterility, NAD-binding Reactome: R-HSA-8848584 AM354_RS23750 7f4319e2ca10d1db02dff4c86f68da02 369 Gene3D G3DSA:3.40.50.720 1 365 6.0E-35 T 29-03-2018 AM354_RS13775 e31f07af55d504585be371f9511a0121 321 Pfam PF00294 pfkB family carbohydrate kinase 15 315 3.2E-62 T 29-03-2018 IPR011611 Carbohydrate kinase PfkB AM354_RS13775 e31f07af55d504585be371f9511a0121 321 Gene3D G3DSA:3.40.1190.20 14 321 1.4E-64 T 29-03-2018 IPR029056 Ribokinase-like AM354_RS13775 e31f07af55d504585be371f9511a0121 321 SUPERFAMILY SSF53613 13 319 1.04E-82 T 29-03-2018 IPR029056 Ribokinase-like AM354_RS25860 8518f245be62786312aa1cda55cd6d1f 313 Gene3D G3DSA:2.60.120.10 19 264 1.1E-60 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS25860 8518f245be62786312aa1cda55cd6d1f 313 PIRSF PIRSF006232 21 299 1.7E-73 T 29-03-2018 IPR012093 Pirin Reactome: R-HSA-8935690 AM354_RS25860 8518f245be62786312aa1cda55cd6d1f 313 Pfam PF02678 Pirin 40 139 2.0E-30 T 29-03-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 AM354_RS25860 8518f245be62786312aa1cda55cd6d1f 313 Pfam PF05726 Pirin C-terminal cupin domain 191 288 8.7E-20 T 29-03-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 AM354_RS25860 8518f245be62786312aa1cda55cd6d1f 313 SUPERFAMILY SSF51182 23 302 4.23E-72 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS07605 ca9fb483584ea8c8a38c3ea9e7809b46 209 Gene3D G3DSA:1.10.10.10 124 209 2.1E-27 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS07605 ca9fb483584ea8c8a38c3ea9e7809b46 209 ProSitePatterns PS00622 LuxR-type HTH domain signature. 160 187 - T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS07605 ca9fb483584ea8c8a38c3ea9e7809b46 209 SUPERFAMILY SSF46894 133 206 2.41E-20 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS07605 ca9fb483584ea8c8a38c3ea9e7809b46 209 SMART SM00421 143 200 2.6E-20 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS07605 ca9fb483584ea8c8a38c3ea9e7809b46 209 SUPERFAMILY SSF52172 1 118 1.34E-29 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS07605 ca9fb483584ea8c8a38c3ea9e7809b46 209 Gene3D G3DSA:3.40.50.2300 1 123 1.7E-28 T 29-03-2018 AM354_RS07605 ca9fb483584ea8c8a38c3ea9e7809b46 209 SMART SM00448 2 115 6.4E-27 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS07605 ca9fb483584ea8c8a38c3ea9e7809b46 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 176 188 8.4E-12 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS07605 ca9fb483584ea8c8a38c3ea9e7809b46 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 146 160 8.4E-12 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS07605 ca9fb483584ea8c8a38c3ea9e7809b46 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 160 176 8.4E-12 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS07605 ca9fb483584ea8c8a38c3ea9e7809b46 209 Pfam PF00196 Bacterial regulatory proteins, luxR family 145 200 1.7E-18 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS07605 ca9fb483584ea8c8a38c3ea9e7809b46 209 Pfam PF00072 Response regulator receiver domain 4 116 5.4E-25 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS24670 024d61ff0ce19a59c8993c94fc030a58 146 TIGRFAM TIGR02286 PaaD: phenylacetic acid degradation protein PaaD 25 137 4.6E-47 T 29-03-2018 IPR011973 Phenylacetic acid degradation protein PaaD GO:0016790 AM354_RS24670 024d61ff0ce19a59c8993c94fc030a58 146 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 22 135 3.3E-33 T 29-03-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 AM354_RS24670 024d61ff0ce19a59c8993c94fc030a58 146 SUPERFAMILY SSF54637 7 132 9.84E-32 T 29-03-2018 IPR029069 HotDog domain AM354_RS24670 024d61ff0ce19a59c8993c94fc030a58 146 Pfam PF03061 Thioesterase superfamily 54 128 6.2E-18 T 29-03-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AM354_RS24670 024d61ff0ce19a59c8993c94fc030a58 146 Gene3D G3DSA:3.10.129.10 1 136 6.0E-32 T 29-03-2018 AM354_RS22200 749791e85862af51d65854c8b7204dcb 759 Pfam PF00390 Malic enzyme, N-terminal domain 115 151 8.4E-6 T 29-03-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AM354_RS22200 749791e85862af51d65854c8b7204dcb 759 Pfam PF00390 Malic enzyme, N-terminal domain 19 114 8.1E-22 T 29-03-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AM354_RS22200 749791e85862af51d65854c8b7204dcb 759 PIRSF PIRSF036684 1 758 0.0 T 29-03-2018 IPR012188 NAD(P)-dependent malic enzyme GO:0004470|GO:0006108|GO:0046872 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 AM354_RS22200 749791e85862af51d65854c8b7204dcb 759 SMART SM00919 163 401 1.1E-141 T 29-03-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 AM354_RS22200 749791e85862af51d65854c8b7204dcb 759 SUPERFAMILY SSF51735 163 453 1.81E-87 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS22200 749791e85862af51d65854c8b7204dcb 759 Pfam PF03949 Malic enzyme, NAD binding domain 165 359 6.1E-19 T 29-03-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 AM354_RS22200 749791e85862af51d65854c8b7204dcb 759 Gene3D G3DSA:3.40.50.720 161 446 8.1E-85 T 29-03-2018 AM354_RS22200 749791e85862af51d65854c8b7204dcb 759 SUPERFAMILY SSF53659 430 754 4.52E-91 T 29-03-2018 AM354_RS22200 749791e85862af51d65854c8b7204dcb 759 SUPERFAMILY SSF53223 10 161 7.91E-53 T 29-03-2018 AM354_RS22200 749791e85862af51d65854c8b7204dcb 759 Gene3D G3DSA:3.40.50.10380 5 160 2.2E-35 T 29-03-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AM354_RS22200 749791e85862af51d65854c8b7204dcb 759 SMART SM01274 18 151 1.8E-80 T 29-03-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AM354_RS22200 749791e85862af51d65854c8b7204dcb 759 Gene3D G3DSA:3.40.718.10 447 715 3.8E-49 T 29-03-2018 AM354_RS22200 749791e85862af51d65854c8b7204dcb 759 Pfam PF01515 Phosphate acetyl/butaryl transferase 430 751 4.3E-98 T 29-03-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AM354_RS22200 749791e85862af51d65854c8b7204dcb 759 ProSitePatterns PS00331 Malic enzymes signature. 159 175 - T 29-03-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 AM354_RS04260 e38028ab92cf8e519728c8efc3a81d71 461 Gene3D G3DSA:3.90.1820.10 1 461 1.7E-102 T 29-03-2018 AM354_RS04260 e38028ab92cf8e519728c8efc3a81d71 461 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 192 436 5.2E-39 T 29-03-2018 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 AM354_RS04260 e38028ab92cf8e519728c8efc3a81d71 461 SUPERFAMILY SSF56327 166 456 1.04E-53 T 29-03-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AM354_RS04260 e38028ab92cf8e519728c8efc3a81d71 461 Pfam PF02056 Family 4 glycosyl hydrolase 2 181 4.0E-33 T 29-03-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AM354_RS04260 e38028ab92cf8e519728c8efc3a81d71 461 PRINTS PR00732 Glycosyl hydrolase family 4 signature 71 87 7.9E-21 T 29-03-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AM354_RS04260 e38028ab92cf8e519728c8efc3a81d71 461 PRINTS PR00732 Glycosyl hydrolase family 4 signature 188 200 7.9E-21 T 29-03-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AM354_RS04260 e38028ab92cf8e519728c8efc3a81d71 461 PRINTS PR00732 Glycosyl hydrolase family 4 signature 92 105 7.9E-21 T 29-03-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AM354_RS04260 e38028ab92cf8e519728c8efc3a81d71 461 PRINTS PR00732 Glycosyl hydrolase family 4 signature 136 153 7.9E-21 T 29-03-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AM354_RS04260 e38028ab92cf8e519728c8efc3a81d71 461 PRINTS PR00732 Glycosyl hydrolase family 4 signature 162 173 7.9E-21 T 29-03-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AM354_RS04260 e38028ab92cf8e519728c8efc3a81d71 461 PRINTS PR00732 Glycosyl hydrolase family 4 signature 2 17 7.9E-21 T 29-03-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AM354_RS04260 e38028ab92cf8e519728c8efc3a81d71 461 SUPERFAMILY SSF51735 1 157 4.07E-41 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS03870 be7d3c764246ea342e51b593e129634b 149 PRINTS PR01438 Universal stress protein signature 2 20 7.5E-14 T 29-03-2018 IPR006015 Universal stress protein A AM354_RS03870 be7d3c764246ea342e51b593e129634b 149 PRINTS PR01438 Universal stress protein signature 105 117 7.5E-14 T 29-03-2018 IPR006015 Universal stress protein A AM354_RS03870 be7d3c764246ea342e51b593e129634b 149 PRINTS PR01438 Universal stress protein signature 122 144 7.5E-14 T 29-03-2018 IPR006015 Universal stress protein A AM354_RS03870 be7d3c764246ea342e51b593e129634b 149 Gene3D G3DSA:3.40.50.620 1 143 3.8E-30 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS03870 be7d3c764246ea342e51b593e129634b 149 Pfam PF00582 Universal stress protein family 1 144 1.0E-26 T 29-03-2018 IPR006016 UspA GO:0006950 AM354_RS03870 be7d3c764246ea342e51b593e129634b 149 SUPERFAMILY SSF52402 2 145 3.77E-31 T 29-03-2018 AM354_RS21900 f8a46a2c389f31536ec4052b6bf7e629 270 SMART SM00382 48 242 2.7E-13 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS21900 f8a46a2c389f31536ec4052b6bf7e629 270 SUPERFAMILY SSF52540 23 257 1.82E-58 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS21900 f8a46a2c389f31536ec4052b6bf7e629 270 Pfam PF00005 ABC transporter 39 195 6.0E-30 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS21900 f8a46a2c389f31536ec4052b6bf7e629 270 Gene3D G3DSA:3.40.50.300 11 268 2.5E-59 T 29-03-2018 AM354_RS21900 f8a46a2c389f31536ec4052b6bf7e629 270 ProSitePatterns PS00211 ABC transporters family signature. 167 181 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS21900 f8a46a2c389f31536ec4052b6bf7e629 270 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 24 270 2.2E-118 T 29-03-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 AM354_RS09325 039d9ee33c83246e91d81676d0a78fe3 282 SUPERFAMILY SSF63520 58 167 3.53E-27 T 29-03-2018 IPR011608 PRD domain GO:0006355 AM354_RS09325 039d9ee33c83246e91d81676d0a78fe3 282 Gene3D G3DSA:2.30.24.10 1 57 1.0E-24 T 29-03-2018 IPR004341 CAT RNA-binding domain GO:0003723 AM354_RS09325 039d9ee33c83246e91d81676d0a78fe3 282 SUPERFAMILY SSF50151 1 52 7.06E-18 T 29-03-2018 IPR004341 CAT RNA-binding domain GO:0003723 AM354_RS09325 039d9ee33c83246e91d81676d0a78fe3 282 Gene3D G3DSA:1.10.1790.10 165 276 8.2E-26 T 29-03-2018 IPR011608 PRD domain GO:0006355 AM354_RS09325 039d9ee33c83246e91d81676d0a78fe3 282 Gene3D G3DSA:1.10.1790.10 58 164 3.6E-22 T 29-03-2018 IPR011608 PRD domain GO:0006355 AM354_RS09325 039d9ee33c83246e91d81676d0a78fe3 282 SMART SM01061 1 59 6.1E-28 T 29-03-2018 IPR004341 CAT RNA-binding domain GO:0003723 AM354_RS09325 039d9ee33c83246e91d81676d0a78fe3 282 Pfam PF03123 CAT RNA binding domain 1 50 2.7E-23 T 29-03-2018 IPR004341 CAT RNA-binding domain GO:0003723 AM354_RS09325 039d9ee33c83246e91d81676d0a78fe3 282 Pfam PF00874 PRD domain 180 272 1.7E-19 T 29-03-2018 IPR011608 PRD domain GO:0006355 AM354_RS09325 039d9ee33c83246e91d81676d0a78fe3 282 Pfam PF00874 PRD domain 77 163 1.1E-20 T 29-03-2018 IPR011608 PRD domain GO:0006355 AM354_RS09325 039d9ee33c83246e91d81676d0a78fe3 282 SUPERFAMILY SSF63520 170 273 3.4E-27 T 29-03-2018 IPR011608 PRD domain GO:0006355 AM354_RS16425 e6ce155952132b008c84c8577cfc6c28 327 SUPERFAMILY SSF53590 2 324 1.18E-68 T 29-03-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain AM354_RS16425 e6ce155952132b008c84c8577cfc6c28 327 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 2 317 1.7E-62 T 29-03-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain AM354_RS16425 e6ce155952132b008c84c8577cfc6c28 327 Gene3D G3DSA:3.90.245.10 1 327 1.5E-79 T 29-03-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain AM354_RS15115 53486cab849d579a718432e453ecb4d3 522 PIRSF PIRSF007056 2 518 6.8E-224 T 29-03-2018 IPR012036 Bacteriophage Mu, Gp28 AM354_RS05785 5071773ef0eee7c87b9971f2bde6bbfa 73 SUPERFAMILY SSF50249 1 66 5.78E-23 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS05785 5071773ef0eee7c87b9971f2bde6bbfa 73 TIGRFAM TIGR02381 cspD: cold shock domain protein CspD 1 68 7.7E-42 T 29-03-2018 IPR012751 CspD, cold shock GO:0003676|GO:0005737|GO:0006355|GO:0006950 AM354_RS05785 5071773ef0eee7c87b9971f2bde6bbfa 73 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 29-03-2018 IPR019844 Cold-shock conserved site AM354_RS05785 5071773ef0eee7c87b9971f2bde6bbfa 73 SMART SM00357 3 67 5.3E-28 T 29-03-2018 IPR011129 Cold shock domain GO:0003676 AM354_RS05785 5071773ef0eee7c87b9971f2bde6bbfa 73 PIRSF PIRSF002599 1 73 1.1E-22 T 29-03-2018 IPR012156 Cold shock, CspA GO:0003676 AM354_RS05785 5071773ef0eee7c87b9971f2bde6bbfa 73 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 3.4E-28 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM354_RS05785 5071773ef0eee7c87b9971f2bde6bbfa 73 Gene3D G3DSA:2.40.50.140 1 73 2.0E-26 T 29-03-2018 AM354_RS05785 5071773ef0eee7c87b9971f2bde6bbfa 73 PRINTS PR00050 Cold shock protein signature 4 19 3.6E-16 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM354_RS05785 5071773ef0eee7c87b9971f2bde6bbfa 73 PRINTS PR00050 Cold shock protein signature 40 58 3.6E-16 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM354_RS05785 5071773ef0eee7c87b9971f2bde6bbfa 73 PRINTS PR00050 Cold shock protein signature 25 34 3.6E-16 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM354_RS01660 ef5bfb83c0196f6355bf841a6ff58da6 82 Pfam PF05957 Bacterial protein of unknown function (DUF883) 4 82 1.5E-11 T 29-03-2018 IPR010279 Protein of unknown function DUF883, ElaB AM354_RS01660 ef5bfb83c0196f6355bf841a6ff58da6 82 Gene3D G3DSA:1.10.1470.10 3 60 2.8E-9 T 29-03-2018 IPR008462 CsbD-like domain AM354_RS01660 ef5bfb83c0196f6355bf841a6ff58da6 82 SUPERFAMILY SSF69047 4 58 1.57E-5 T 29-03-2018 IPR008462 CsbD-like domain AM354_RS23215 e0a0be607e4a51d17ea1bb4afc779201 343 Gene3D G3DSA:3.90.180.10 6 167 1.6E-29 T 29-03-2018 AM354_RS23215 e0a0be607e4a51d17ea1bb4afc779201 343 Pfam PF00107 Zinc-binding dehydrogenase 180 304 4.5E-24 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AM354_RS23215 e0a0be607e4a51d17ea1bb4afc779201 343 SUPERFAMILY SSF51735 146 303 8.68E-31 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS23215 e0a0be607e4a51d17ea1bb4afc779201 343 Gene3D G3DSA:3.40.50.720 168 289 1.1E-23 T 29-03-2018 AM354_RS23215 e0a0be607e4a51d17ea1bb4afc779201 343 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 30 139 7.5E-27 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AM354_RS23215 e0a0be607e4a51d17ea1bb4afc779201 343 SUPERFAMILY SSF50129 7 176 1.52E-36 T 29-03-2018 IPR011032 GroES-like AM354_RS24265 525f7e77917c6b05523b53d174d02706 546 Pfam PF00999 Sodium/hydrogen exchanger family 7 420 1.2E-71 T 29-03-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AM354_RS24265 525f7e77917c6b05523b53d174d02706 546 TIGRFAM TIGR00831 a_cpa1: Na+/H+ antiporter 7 541 2.4E-151 T 29-03-2018 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria GO:0006812|GO:0015299|GO:0016021 AM354_RS24585 73972e7d9877991a34c8306855cea2b1 297 Gene3D G3DSA:3.40.190.10 179 267 1.4E-28 T 29-03-2018 AM354_RS24585 73972e7d9877991a34c8306855cea2b1 297 Gene3D G3DSA:1.10.10.10 3 86 1.3E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS24585 73972e7d9877991a34c8306855cea2b1 297 SUPERFAMILY SSF53850 92 295 2.17E-42 T 29-03-2018 AM354_RS24585 73972e7d9877991a34c8306855cea2b1 297 Pfam PF03466 LysR substrate binding domain 90 295 5.2E-41 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS24585 73972e7d9877991a34c8306855cea2b1 297 SUPERFAMILY SSF46785 4 85 3.56E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS24585 73972e7d9877991a34c8306855cea2b1 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 3.1E-20 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS24585 73972e7d9877991a34c8306855cea2b1 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 1.4E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS24585 73972e7d9877991a34c8306855cea2b1 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 1.4E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS24585 73972e7d9877991a34c8306855cea2b1 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 1.4E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS24585 73972e7d9877991a34c8306855cea2b1 297 Gene3D G3DSA:3.40.190.10 92 178 6.1E-10 T 29-03-2018 AM354_RS01125 e626e503f347179b1dbb249b3d0140f9 644 Hamap MF_01036 Exoribonuclease 2 [rnb]. 1 643 44.775 T 29-03-2018 IPR011804 Ribonuclease II GO:0003723|GO:0006401|GO:0008859 AM354_RS01125 e626e503f347179b1dbb249b3d0140f9 644 SUPERFAMILY SSF50249 560 642 3.47E-20 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS01125 e626e503f347179b1dbb249b3d0140f9 644 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 6 641 3.7E-223 T 29-03-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 AM354_RS01125 e626e503f347179b1dbb249b3d0140f9 644 SMART SM00357 23 79 7.2E-11 T 29-03-2018 IPR011129 Cold shock domain GO:0003676 AM354_RS01125 e626e503f347179b1dbb249b3d0140f9 644 SUPERFAMILY SSF50249 8 80 5.47E-15 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS01125 e626e503f347179b1dbb249b3d0140f9 644 Gene3D G3DSA:2.40.50.140 558 644 6.2E-6 T 29-03-2018 AM354_RS01125 e626e503f347179b1dbb249b3d0140f9 644 Pfam PF08206 Ribonuclease B OB domain 24 80 1.2E-17 T 29-03-2018 IPR013223 Ribonuclease B, N-terminal OB domain AM354_RS01125 e626e503f347179b1dbb249b3d0140f9 644 TIGRFAM TIGR02062 RNase_B: exoribonuclease II 1 642 0.0 T 29-03-2018 IPR011804 Ribonuclease II GO:0003723|GO:0006401|GO:0008859 AM354_RS01125 e626e503f347179b1dbb249b3d0140f9 644 SUPERFAMILY SSF50249 83 171 4.28E-30 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS01125 e626e503f347179b1dbb249b3d0140f9 644 SUPERFAMILY SSF50249 182 556 9.14E-112 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS01125 e626e503f347179b1dbb249b3d0140f9 644 SMART SM00955 189 517 3.2E-119 T 29-03-2018 AM354_RS01125 e626e503f347179b1dbb249b3d0140f9 644 ProSitePatterns PS01175 Ribonuclease II family signature. 484 508 - T 29-03-2018 IPR022966 Ribonuclease II/R, conserved site AM354_RS01125 e626e503f347179b1dbb249b3d0140f9 644 Pfam PF00575 S1 RNA binding domain 559 639 1.3E-9 T 29-03-2018 IPR003029 S1 domain GO:0003676 AM354_RS01125 e626e503f347179b1dbb249b3d0140f9 644 Pfam PF00773 RNB domain 189 516 8.3E-84 T 29-03-2018 AM354_RS05095 b9c3d3ad91055e933f3045909a8b0da8 150 Pfam PF03061 Thioesterase superfamily 56 132 9.3E-10 T 29-03-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AM354_RS05095 b9c3d3ad91055e933f3045909a8b0da8 150 Gene3D G3DSA:3.10.129.10 6 149 2.5E-29 T 29-03-2018 AM354_RS05095 b9c3d3ad91055e933f3045909a8b0da8 150 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 26 140 9.1E-17 T 29-03-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 AM354_RS05095 b9c3d3ad91055e933f3045909a8b0da8 150 SUPERFAMILY SSF54637 4 140 2.43E-33 T 29-03-2018 IPR029069 HotDog domain AM354_RS19470 a710f0198232dfc53c52da5d38a161e5 959 SUPERFAMILY SSF53383 931 953 5.16E-97 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS19470 a710f0198232dfc53c52da5d38a161e5 959 SUPERFAMILY SSF53383 462 889 5.16E-97 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS19470 a710f0198232dfc53c52da5d38a161e5 959 Gene3D G3DSA:3.90.1150.10 343 442 3.3E-25 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS19470 a710f0198232dfc53c52da5d38a161e5 959 SUPERFAMILY SSF53383 17 441 2.46E-97 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS19470 a710f0198232dfc53c52da5d38a161e5 959 Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. 8 958 25.498 T 29-03-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 AM354_RS19470 a710f0198232dfc53c52da5d38a161e5 959 TIGRFAM TIGR00461 gcvP: glycine dehydrogenase 17 952 0.0 T 29-03-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 AM354_RS19470 a710f0198232dfc53c52da5d38a161e5 959 Pfam PF02347 Glycine cleavage system P-protein 461 739 1.1E-8 T 29-03-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 AM354_RS19470 a710f0198232dfc53c52da5d38a161e5 959 Pfam PF02347 Glycine cleavage system P-protein 16 440 9.6E-183 T 29-03-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 AM354_RS19470 a710f0198232dfc53c52da5d38a161e5 959 Gene3D G3DSA:3.40.640.10 96 342 6.4E-33 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS19470 a710f0198232dfc53c52da5d38a161e5 959 Gene3D G3DSA:3.40.640.10 533 774 1.6E-38 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS19470 a710f0198232dfc53c52da5d38a161e5 959 Gene3D G3DSA:3.90.1150.10 775 906 8.3E-44 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS21140 b60c500a58cf266bc03b142ebaf48368 307 SUPERFAMILY SSF46785 1 112 2.28E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS21140 b60c500a58cf266bc03b142ebaf48368 307 Gene3D G3DSA:1.10.10.10 1 84 1.5E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS21140 b60c500a58cf266bc03b142ebaf48368 307 Pfam PF03466 LysR substrate binding domain 88 295 2.0E-43 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS21140 b60c500a58cf266bc03b142ebaf48368 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 1.0E-19 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS21140 b60c500a58cf266bc03b142ebaf48368 307 Gene3D G3DSA:3.40.190.10 183 267 5.5E-18 T 29-03-2018 AM354_RS21140 b60c500a58cf266bc03b142ebaf48368 307 Gene3D G3DSA:3.40.190.10 89 182 1.4E-22 T 29-03-2018 AM354_RS21140 b60c500a58cf266bc03b142ebaf48368 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.6E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS21140 b60c500a58cf266bc03b142ebaf48368 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.6E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS21140 b60c500a58cf266bc03b142ebaf48368 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.6E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS21140 b60c500a58cf266bc03b142ebaf48368 307 SUPERFAMILY SSF53850 87 299 1.41E-38 T 29-03-2018 AM354_RS21215 b660a7d9b32101c693fe460f141ab1e4 267 SUPERFAMILY SSF56655 1 259 5.89E-85 T 29-03-2018 AM354_RS21215 b660a7d9b32101c693fe460f141ab1e4 267 Gene3D G3DSA:3.40.190.80 146 267 1.5E-37 T 29-03-2018 AM354_RS21215 b660a7d9b32101c693fe460f141ab1e4 267 Pfam PF00459 Inositol monophosphatase family 2 260 3.2E-72 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AM354_RS21215 b660a7d9b32101c693fe460f141ab1e4 267 Gene3D G3DSA:3.30.540.10 1 145 4.7E-47 T 29-03-2018 AM354_RS21215 b660a7d9b32101c693fe460f141ab1e4 267 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 81 94 - T 29-03-2018 IPR020583 Inositol monophosphatase, metal-binding site AM354_RS21215 b660a7d9b32101c693fe460f141ab1e4 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 208 232 1.3E-59 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AM354_RS21215 b660a7d9b32101c693fe460f141ab1e4 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 60 76 1.3E-59 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AM354_RS21215 b660a7d9b32101c693fe460f141ab1e4 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 81 97 1.3E-59 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AM354_RS21215 b660a7d9b32101c693fe460f141ab1e4 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 130 153 1.3E-59 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AM354_RS21215 b660a7d9b32101c693fe460f141ab1e4 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 38 58 1.3E-59 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AM354_RS21215 b660a7d9b32101c693fe460f141ab1e4 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 177 198 1.3E-59 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AM354_RS21215 b660a7d9b32101c693fe460f141ab1e4 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 156 182 2.0E-36 T 29-03-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 AM354_RS21215 b660a7d9b32101c693fe460f141ab1e4 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 17 39 2.0E-36 T 29-03-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 AM354_RS21215 b660a7d9b32101c693fe460f141ab1e4 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 198 210 2.0E-36 T 29-03-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 AM354_RS21215 b660a7d9b32101c693fe460f141ab1e4 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 104 123 2.0E-36 T 29-03-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 AM354_RS21215 b660a7d9b32101c693fe460f141ab1e4 267 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 211 225 - T 29-03-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 AM354_RS22565 195844e6f0cdcbae28a71f38c129acd3 320 Pfam PF02685 Glucokinase 5 314 5.4E-124 T 29-03-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 AM354_RS22565 195844e6f0cdcbae28a71f38c129acd3 320 TIGRFAM TIGR00749 glk: glucokinase 5 309 1.0E-140 T 29-03-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 AM354_RS22565 195844e6f0cdcbae28a71f38c129acd3 320 Gene3D G3DSA:3.30.420.40 1 107 1.3E-16 T 29-03-2018 AM354_RS22565 195844e6f0cdcbae28a71f38c129acd3 320 Gene3D G3DSA:3.40.367.20 108 298 1.1E-30 T 29-03-2018 AM354_RS22565 195844e6f0cdcbae28a71f38c129acd3 320 SUPERFAMILY SSF53067 1 316 7.21E-67 T 29-03-2018 AM354_RS22565 195844e6f0cdcbae28a71f38c129acd3 320 Hamap MF_00524 Glucokinase [glk]. 3 315 35.308 T 29-03-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 AM354_RS01815 a213ab01bf80f3f76ae50ec59f5964ad 392 SUPERFAMILY SSF54373 174 274 5.1E-43 T 29-03-2018 AM354_RS01815 a213ab01bf80f3f76ae50ec59f5964ad 392 Pfam PF01494 FAD binding domain 2 341 1.9E-83 T 29-03-2018 IPR002938 FAD-binding domain GO:0071949 AM354_RS01815 a213ab01bf80f3f76ae50ec59f5964ad 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 277 292 1.0E-26 T 29-03-2018 AM354_RS01815 a213ab01bf80f3f76ae50ec59f5964ad 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 4 26 1.0E-26 T 29-03-2018 AM354_RS01815 a213ab01bf80f3f76ae50ec59f5964ad 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 150 165 1.0E-26 T 29-03-2018 AM354_RS01815 a213ab01bf80f3f76ae50ec59f5964ad 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 292 308 1.0E-26 T 29-03-2018 AM354_RS01815 a213ab01bf80f3f76ae50ec59f5964ad 392 Gene3D G3DSA:3.30.9.10 306 387 7.1E-18 T 29-03-2018 AM354_RS01815 a213ab01bf80f3f76ae50ec59f5964ad 392 Gene3D G3DSA:3.30.9.10 168 285 4.6E-48 T 29-03-2018 AM354_RS01815 a213ab01bf80f3f76ae50ec59f5964ad 392 SUPERFAMILY SSF51905 1 171 2.92E-52 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS01815 a213ab01bf80f3f76ae50ec59f5964ad 392 SUPERFAMILY SSF51905 273 388 2.92E-52 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS01815 a213ab01bf80f3f76ae50ec59f5964ad 392 Gene3D G3DSA:3.50.50.60 3 167 4.8E-12 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS19375 bc3035957f628a39acea11482ec6ec39 283 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 16 271 2.2E-52 T 29-03-2018 IPR013658 SMP-30/Gluconolactonase/LRE-like region AM354_RS19375 bc3035957f628a39acea11482ec6ec39 283 Gene3D G3DSA:2.120.10.30 16 283 7.1E-37 T 29-03-2018 IPR011042 Six-bladed beta-propeller, TolB-like AM354_RS19375 bc3035957f628a39acea11482ec6ec39 283 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 147 169 8.4E-10 T 29-03-2018 IPR005511 Senescence marker protein-30 (SMP-30) AM354_RS19375 bc3035957f628a39acea11482ec6ec39 283 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 17 34 8.4E-10 T 29-03-2018 IPR005511 Senescence marker protein-30 (SMP-30) AM354_RS19375 bc3035957f628a39acea11482ec6ec39 283 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 253 271 8.4E-10 T 29-03-2018 IPR005511 Senescence marker protein-30 (SMP-30) AM354_RS19375 bc3035957f628a39acea11482ec6ec39 283 SUPERFAMILY SSF63829 4 283 3.49E-61 T 29-03-2018 AM354_RS08555 933ab64d3bb2571b22c21016931fae6e 174 SUPERFAMILY SSF52255 14 172 2.09E-65 T 29-03-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 AM354_RS08555 933ab64d3bb2571b22c21016931fae6e 174 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 15 169 8.5E-65 T 29-03-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 AM354_RS08555 933ab64d3bb2571b22c21016931fae6e 174 Pfam PF00731 AIR carboxylase 14 162 5.6E-63 T 29-03-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 AM354_RS08555 933ab64d3bb2571b22c21016931fae6e 174 PIRSF PIRSF001338 10 173 2.0E-65 T 29-03-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 AM354_RS08555 933ab64d3bb2571b22c21016931fae6e 174 SMART SM01001 13 164 3.1E-100 T 29-03-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 AM354_RS08555 933ab64d3bb2571b22c21016931fae6e 174 Gene3D G3DSA:3.40.50.7700 5 172 1.4E-64 T 29-03-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 AM354_RS08555 933ab64d3bb2571b22c21016931fae6e 174 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 15 168 31.97 T 29-03-2018 IPR033747 Class I PurE AM354_RS15405 468c81260dc8e96544b51e190ce98905 284 Gene3D G3DSA:1.20.144.10 59 279 1.7E-42 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM354_RS15405 468c81260dc8e96544b51e190ce98905 284 PRINTS PR00483 Bacterial acid phosphatase class A signature 188 214 3.5E-27 T 29-03-2018 IPR001011 Acid phosphatase, class A, bacterial GO:0003993|GO:0030288 KEGG: 00740+3.1.3.2|MetaCyc: PWY-6348 AM354_RS15405 468c81260dc8e96544b51e190ce98905 284 PRINTS PR00483 Bacterial acid phosphatase class A signature 97 116 3.5E-27 T 29-03-2018 IPR001011 Acid phosphatase, class A, bacterial GO:0003993|GO:0030288 KEGG: 00740+3.1.3.2|MetaCyc: PWY-6348 AM354_RS15405 468c81260dc8e96544b51e190ce98905 284 PRINTS PR00483 Bacterial acid phosphatase class A signature 220 244 3.5E-27 T 29-03-2018 IPR001011 Acid phosphatase, class A, bacterial GO:0003993|GO:0030288 KEGG: 00740+3.1.3.2|MetaCyc: PWY-6348 AM354_RS15405 468c81260dc8e96544b51e190ce98905 284 PRINTS PR00483 Bacterial acid phosphatase class A signature 254 272 3.5E-27 T 29-03-2018 IPR001011 Acid phosphatase, class A, bacterial GO:0003993|GO:0030288 KEGG: 00740+3.1.3.2|MetaCyc: PWY-6348 AM354_RS15405 468c81260dc8e96544b51e190ce98905 284 Pfam PF01569 PAP2 superfamily 150 254 4.4E-15 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM354_RS15405 468c81260dc8e96544b51e190ce98905 284 PIRSF PIRSF000897 58 284 1.2E-75 T 29-03-2018 IPR011158 Nonspecific acid phosphatase, class A GO:0003993|GO:0030288 KEGG: 00740+3.1.3.2|MetaCyc: PWY-6348 AM354_RS15405 468c81260dc8e96544b51e190ce98905 284 SMART SM00014 145 257 3.7E-13 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM354_RS15405 468c81260dc8e96544b51e190ce98905 284 SUPERFAMILY SSF48317 63 274 2.62E-41 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM354_RS01470 8be76e4f05a70cc576f64661d8ef2896 174 SUPERFAMILY SSF46767 86 168 3.01E-34 T 29-03-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 AM354_RS01470 8be76e4f05a70cc576f64661d8ef2896 174 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 88 167 3.1E-35 T 29-03-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 AM354_RS01470 8be76e4f05a70cc576f64661d8ef2896 174 SUPERFAMILY SSF53155 9 91 8.24E-7 T 29-03-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 AM354_RS01470 8be76e4f05a70cc576f64661d8ef2896 174 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 21 167 39.242 T 29-03-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 AM354_RS01470 8be76e4f05a70cc576f64661d8ef2896 174 Gene3D G3DSA:3.30.160.70 1 81 1.3E-6 T 29-03-2018 AM354_RS01470 8be76e4f05a70cc576f64661d8ef2896 174 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 137 143 - T 29-03-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 AM354_RS01470 8be76e4f05a70cc576f64661d8ef2896 174 Gene3D G3DSA:1.10.10.10 82 169 9.9E-37 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS01470 8be76e4f05a70cc576f64661d8ef2896 174 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 10 82 1.0E-10 T 29-03-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 AM354_RS01470 8be76e4f05a70cc576f64661d8ef2896 174 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 87 166 3.6E-38 T 29-03-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 AM354_RS10630 b018a883b95d61f1c36eabc4e1a54661 572 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 170 4.7E-60 T 29-03-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AM354_RS10630 b018a883b95d61f1c36eabc4e1a54661 572 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 4 567 2.9E-279 T 29-03-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 AM354_RS10630 b018a883b95d61f1c36eabc4e1a54661 572 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 431 450 - T 29-03-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 AM354_RS10630 b018a883b95d61f1c36eabc4e1a54661 572 SUPERFAMILY SSF52518 2 181 1.18E-66 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS10630 b018a883b95d61f1c36eabc4e1a54661 572 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 394 543 1.5E-51 T 29-03-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AM354_RS10630 b018a883b95d61f1c36eabc4e1a54661 572 Gene3D G3DSA:3.40.50.1220 200 354 1.4E-54 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM354_RS10630 b018a883b95d61f1c36eabc4e1a54661 572 SUPERFAMILY SSF52518 371 566 7.56E-70 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS10630 b018a883b95d61f1c36eabc4e1a54661 572 SUPERFAMILY SSF52467 188 362 5.4E-62 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM354_RS10630 b018a883b95d61f1c36eabc4e1a54661 572 Gene3D G3DSA:3.40.50.970 355 561 2.1E-53 T 29-03-2018 AM354_RS10630 b018a883b95d61f1c36eabc4e1a54661 572 Gene3D G3DSA:3.40.50.970 1 199 4.5E-68 T 29-03-2018 AM354_RS10630 b018a883b95d61f1c36eabc4e1a54661 572 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 196 330 1.4E-46 T 29-03-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AM354_RS02645 245a8350592a68e544b673de4cfe4f72 209 Pfam PF00857 Isochorismatase family 24 197 3.9E-32 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM354_RS02645 245a8350592a68e544b673de4cfe4f72 209 Gene3D G3DSA:3.40.50.850 15 209 3.8E-43 T 29-03-2018 AM354_RS02645 245a8350592a68e544b673de4cfe4f72 209 SUPERFAMILY SSF52499 16 207 5.76E-48 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM354_RS15575 a25769a8a6c0ad7b6dae99edb88942cf 227 SUPERFAMILY SSF53271 48 225 3.02E-39 T 29-03-2018 IPR029057 Phosphoribosyltransferase-like AM354_RS15575 a25769a8a6c0ad7b6dae99edb88942cf 227 Gene3D G3DSA:3.40.50.2020 61 227 1.1E-28 T 29-03-2018 AM354_RS15575 a25769a8a6c0ad7b6dae99edb88942cf 227 Pfam PF00156 Phosphoribosyl transferase domain 185 224 8.8E-8 T 29-03-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AM354_RS21800 8f2ff7263b4083937199079561d2014f 129 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 2 126 10.848 T 29-03-2018 IPR022907 VapC family GO:0004540 AM354_RS21800 8f2ff7263b4083937199079561d2014f 129 Pfam PF01850 PIN domain 2 119 4.2E-14 T 29-03-2018 IPR002716 PIN domain AM354_RS21800 8f2ff7263b4083937199079561d2014f 129 SUPERFAMILY SSF88723 1 128 3.08E-34 T 29-03-2018 IPR029060 PIN domain-like AM354_RS21800 8f2ff7263b4083937199079561d2014f 129 Gene3D G3DSA:3.40.50.1010 1 129 5.5E-28 T 29-03-2018 IPR029060 PIN domain-like AM354_RS11765 bfa0c1a506db28b9b96d0ec6c8d1921e 471 Pfam PF02378 Phosphotransferase system, EIIC 112 404 6.5E-33 T 29-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AM354_RS11765 bfa0c1a506db28b9b96d0ec6c8d1921e 471 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 21 38 - T 29-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AM354_RS11765 bfa0c1a506db28b9b96d0ec6c8d1921e 471 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 30 111 8.8E-19 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM354_RS11765 bfa0c1a506db28b9b96d0ec6c8d1921e 471 Gene3D G3DSA:3.30.1360.60 6 81 1.9E-24 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM354_RS11765 bfa0c1a506db28b9b96d0ec6c8d1921e 471 Pfam PF00367 phosphotransferase system, EIIB 12 42 5.1E-13 T 29-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AM354_RS11765 bfa0c1a506db28b9b96d0ec6c8d1921e 471 SUPERFAMILY SSF55604 10 81 8.11E-20 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM354_RS11765 bfa0c1a506db28b9b96d0ec6c8d1921e 471 TIGRFAM TIGR01992 PTS-IIBC-Tre: PTS system, trehalose-specific IIBC component 6 460 8.6E-213 T 29-03-2018 IPR011296 Phosphotransferase system, trehalose-specific IIBC component GO:0015574|GO:0015771|GO:0016021 KEGG: 00230+2.7.1.20|KEGG: 00500+2.7.1.201|MetaCyc: PWY-6619 AM354_RS02390 e3a3e2b00ed2bc9d5ca944db6074b981 156 Pfam PF02082 Transcriptional regulator 3 82 1.0E-23 T 29-03-2018 IPR000944 Transcription regulator Rrf2-type AM354_RS02390 e3a3e2b00ed2bc9d5ca944db6074b981 156 SUPERFAMILY SSF46785 4 137 2.84E-30 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS02390 e3a3e2b00ed2bc9d5ca944db6074b981 156 Gene3D G3DSA:1.10.10.10 1 142 1.7E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS19635 0736034d87fe29e890f80824ef84c016 238 Pfam PF10411 Disulfide bond isomerase protein N-terminus 27 77 4.2E-15 T 29-03-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal AM354_RS19635 0736034d87fe29e890f80824ef84c016 238 Pfam PF13098 Thioredoxin-like domain 105 227 2.2E-29 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS19635 0736034d87fe29e890f80824ef84c016 238 SUPERFAMILY SSF52833 91 230 1.68E-41 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS19635 0736034d87fe29e890f80824ef84c016 238 Gene3D G3DSA:3.40.30.10 94 237 4.1E-29 T 29-03-2018 AM354_RS19635 0736034d87fe29e890f80824ef84c016 238 ProSitePatterns PS00194 Thioredoxin family active site. 111 129 - T 29-03-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AM354_RS19635 0736034d87fe29e890f80824ef84c016 238 SUPERFAMILY SSF54423 22 81 4.97E-18 T 29-03-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal AM354_RS19635 0736034d87fe29e890f80824ef84c016 238 Gene3D G3DSA:3.10.450.70 19 79 6.3E-22 T 29-03-2018 AM354_RS13030 41b0fd2e390be5e389e04a9ca621be83 308 Pfam PF02653 Branched-chain amino acid transport system / permease component 12 292 1.9E-65 T 29-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AM354_RS13030 41b0fd2e390be5e389e04a9ca621be83 308 Gene3D G3DSA:1.10.3470.10 3 299 2.0E-51 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS12515 4f11f5fc1d7629d3cb14fc3cd300440f 354 Pfam PF13360 PQQ-like domain 111 308 1.8E-5 T 29-03-2018 IPR002372 Pyrrolo-quinoline quinone repeat AM354_RS12515 4f11f5fc1d7629d3cb14fc3cd300440f 354 Gene3D G3DSA:2.130.10.10 32 353 1.5E-52 T 29-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AM354_RS12515 4f11f5fc1d7629d3cb14fc3cd300440f 354 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 282 321 7.7E-8 T 29-03-2018 IPR011964 YVTN beta-propeller repeat AM354_RS12515 4f11f5fc1d7629d3cb14fc3cd300440f 354 SUPERFAMILY SSF51004 34 342 5.49E-44 T 29-03-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain AM354_RS09395 2f93751d4925617983475ce3e8df573f 895 Gene3D G3DSA:2.170.130.10 149 274 9.4E-14 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS09395 2f93751d4925617983475ce3e8df573f 895 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 134 895 1.8E-176 T 29-03-2018 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0004872|GO:0005215|GO:0006810|GO:0019867 AM354_RS09395 2f93751d4925617983475ce3e8df573f 895 Pfam PF00593 TonB dependent receptor 354 894 3.6E-42 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS09395 2f93751d4925617983475ce3e8df573f 895 Gene3D G3DSA:2.40.170.20 275 895 2.9E-89 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS09395 2f93751d4925617983475ce3e8df573f 895 SUPERFAMILY SSF56935 587 744 5.95E-88 T 29-03-2018 AM354_RS09395 2f93751d4925617983475ce3e8df573f 895 SUPERFAMILY SSF56935 353 559 5.95E-88 T 29-03-2018 AM354_RS09395 2f93751d4925617983475ce3e8df573f 895 SUPERFAMILY SSF56935 150 321 5.95E-88 T 29-03-2018 AM354_RS09395 2f93751d4925617983475ce3e8df573f 895 SUPERFAMILY SSF56935 781 895 5.95E-88 T 29-03-2018 AM354_RS09395 2f93751d4925617983475ce3e8df573f 895 SMART SM00965 70 121 1.1E-6 T 29-03-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 AM354_RS09395 2f93751d4925617983475ce3e8df573f 895 Pfam PF07660 Secretin and TonB N terminus short domain 70 120 6.5E-7 T 29-03-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 AM354_RS09395 2f93751d4925617983475ce3e8df573f 895 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 146 895 4.8E-132 T 29-03-2018 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0004872|GO:0005215|GO:0006810|GO:0019867 AM354_RS09395 2f93751d4925617983475ce3e8df573f 895 Pfam PF07715 TonB-dependent Receptor Plug Domain 152 259 5.9E-12 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS12550 fa9dee33d0837a12f2ad03fa6a9c510e 459 SUPERFAMILY SSF53474 188 430 3.63E-46 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS12550 fa9dee33d0837a12f2ad03fa6a9c510e 459 Pfam PF00756 Putative esterase 203 428 9.2E-35 T 29-03-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 AM354_RS12550 fa9dee33d0837a12f2ad03fa6a9c510e 459 Pfam PF11806 Domain of unknown function (DUF3327) 46 175 1.2E-42 T 29-03-2018 IPR021764 Enterochelin esterase, N-terminal GO:0005506|GO:0005737|GO:0006826|GO:0008849 AM354_RS12550 fa9dee33d0837a12f2ad03fa6a9c510e 459 Gene3D G3DSA:2.60.40.10 15 162 2.5E-43 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS12550 fa9dee33d0837a12f2ad03fa6a9c510e 459 Gene3D G3DSA:3.40.50.1820 165 438 3.6E-37 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS12550 fa9dee33d0837a12f2ad03fa6a9c510e 459 SUPERFAMILY SSF81296 16 170 3.36E-41 T 29-03-2018 IPR014756 Immunoglobulin E-set AM354_RS04090 1c40d6356c35632cd7b26bb3963fa356 212 Pfam PF00717 Peptidase S24-like 122 196 1.0E-13 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AM354_RS04090 1c40d6356c35632cd7b26bb3963fa356 212 SMART SM00530 4 59 2.0E-8 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM354_RS04090 1c40d6356c35632cd7b26bb3963fa356 212 Pfam PF01381 Helix-turn-helix 11 59 6.0E-9 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM354_RS04090 1c40d6356c35632cd7b26bb3963fa356 212 SUPERFAMILY SSF47413 3 61 1.21E-9 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS04090 1c40d6356c35632cd7b26bb3963fa356 212 SUPERFAMILY SSF51306 116 210 1.27E-28 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AM354_RS04090 1c40d6356c35632cd7b26bb3963fa356 212 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 135 146 5.1E-5 T 29-03-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 AM354_RS04090 1c40d6356c35632cd7b26bb3963fa356 212 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 165 177 5.1E-5 T 29-03-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 AM354_RS04090 1c40d6356c35632cd7b26bb3963fa356 212 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 119 129 5.1E-5 T 29-03-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 AM354_RS04090 1c40d6356c35632cd7b26bb3963fa356 212 Gene3D G3DSA:1.10.260.40 1 63 9.9E-14 T 29-03-2018 AM354_RS04090 1c40d6356c35632cd7b26bb3963fa356 212 Gene3D G3DSA:2.10.109.10 77 208 2.4E-19 T 29-03-2018 AM354_RS14215 db1f8d2a1c1aa8a6af1cad4069f66557 297 PIRSF PIRSF035875 1 297 2.9E-67 T 29-03-2018 IPR017039 Virulence factor BrkB AM354_RS14215 db1f8d2a1c1aa8a6af1cad4069f66557 297 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 19 277 2.9E-94 T 29-03-2018 IPR017039 Virulence factor BrkB AM354_RS14215 db1f8d2a1c1aa8a6af1cad4069f66557 297 Hamap MF_00672 UPF0761 membrane protein YihY [yihY]. 4 283 23.665 T 29-03-2018 IPR023679 Uncharacterised protein family UPF0761, bacterial AM354_RS14215 db1f8d2a1c1aa8a6af1cad4069f66557 297 Pfam PF03631 Virulence factor BrkB 30 276 7.9E-59 T 29-03-2018 IPR017039 Virulence factor BrkB AM354_RS13870 124fb12b62dfe0c9b08701fd15866a3d 464 SUPERFAMILY SSF48295 360 463 3.4E-38 T 29-03-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AM354_RS13870 124fb12b62dfe0c9b08701fd15866a3d 464 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 6 462 1.9E-186 T 29-03-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 AM354_RS13870 124fb12b62dfe0c9b08701fd15866a3d 464 SUPERFAMILY SSF52540 129 340 7.92E-45 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS13870 124fb12b62dfe0c9b08701fd15866a3d 464 Pfam PF00308 Bacterial dnaA protein 130 346 5.8E-99 T 29-03-2018 IPR013317 Chromosomal replication initiator protein DnaA AM354_RS13870 124fb12b62dfe0c9b08701fd15866a3d 464 ProSitePatterns PS01008 DnaA protein signature. 422 441 - T 29-03-2018 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 AM354_RS13870 124fb12b62dfe0c9b08701fd15866a3d 464 SMART SM00382 161 363 6.3E-7 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS13870 124fb12b62dfe0c9b08701fd15866a3d 464 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 373 441 1.0E-32 T 29-03-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 AM354_RS13870 124fb12b62dfe0c9b08701fd15866a3d 464 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 260 287 1.2E-54 T 29-03-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AM354_RS13870 124fb12b62dfe0c9b08701fd15866a3d 464 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 226 240 1.2E-54 T 29-03-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AM354_RS13870 124fb12b62dfe0c9b08701fd15866a3d 464 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 162 182 1.2E-54 T 29-03-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AM354_RS13870 124fb12b62dfe0c9b08701fd15866a3d 464 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 194 208 1.2E-54 T 29-03-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AM354_RS13870 124fb12b62dfe0c9b08701fd15866a3d 464 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 422 441 1.2E-54 T 29-03-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AM354_RS13870 124fb12b62dfe0c9b08701fd15866a3d 464 Gene3D G3DSA:1.10.8.60 295 366 7.0E-28 T 29-03-2018 AM354_RS13870 124fb12b62dfe0c9b08701fd15866a3d 464 Pfam PF11638 DnaA N-terminal domain 4 64 2.7E-20 T 29-03-2018 IPR024633 DnaA N-terminal domain AM354_RS13870 124fb12b62dfe0c9b08701fd15866a3d 464 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 3 463 34.437 T 29-03-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 AM354_RS13870 124fb12b62dfe0c9b08701fd15866a3d 464 SMART SM00760 372 441 6.1E-45 T 29-03-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 AM354_RS13870 124fb12b62dfe0c9b08701fd15866a3d 464 Gene3D G3DSA:1.10.1750.10 367 463 1.5E-36 T 29-03-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 AM354_RS13870 124fb12b62dfe0c9b08701fd15866a3d 464 Gene3D G3DSA:3.40.50.300 126 293 8.0E-22 T 29-03-2018 AM354_RS02545 cf9ddbe831f0af728ad9e883439d9790 434 PIRSF PIRSF000018 22 434 3.0E-135 T 29-03-2018 IPR014353 Membrane-bound alcohol dehydrogenase, cytochrome c subunit GO:0005506|GO:0016020|GO:0016614|GO:0020037 AM354_RS02545 cf9ddbe831f0af728ad9e883439d9790 434 Gene3D G3DSA:1.10.760.10 314 434 1.0E-15 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS02545 cf9ddbe831f0af728ad9e883439d9790 434 SUPERFAMILY SSF46626 334 432 9.89E-17 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS02545 cf9ddbe831f0af728ad9e883439d9790 434 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 50 146 2.5E-5 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS02545 cf9ddbe831f0af728ad9e883439d9790 434 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 333 412 6.7E-9 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS02545 cf9ddbe831f0af728ad9e883439d9790 434 Gene3D G3DSA:1.10.760.10 28 164 4.6E-20 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS02545 cf9ddbe831f0af728ad9e883439d9790 434 SUPERFAMILY SSF46626 192 299 3.99E-16 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS02545 cf9ddbe831f0af728ad9e883439d9790 434 SUPERFAMILY SSF46626 32 171 1.31E-26 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS02545 cf9ddbe831f0af728ad9e883439d9790 434 Gene3D G3DSA:1.10.760.10 190 313 2.6E-15 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS01700 13cb3610af40879c569de04c7173c009 340 Gene3D G3DSA:1.10.357.20 166 339 3.1E-39 T 29-03-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 AM354_RS01700 13cb3610af40879c569de04c7173c009 340 Pfam PF00571 CBS domain 92 142 0.0012 T 29-03-2018 IPR000644 CBS domain AM354_RS01700 13cb3610af40879c569de04c7173c009 340 SUPERFAMILY SSF54631 24 162 1.83E-19 T 29-03-2018 AM354_RS01700 13cb3610af40879c569de04c7173c009 340 Gene3D G3DSA:3.10.580.10 6 152 4.7E-19 T 29-03-2018 AM354_RS01700 13cb3610af40879c569de04c7173c009 340 SUPERFAMILY SSF161093 167 338 8.5E-47 T 29-03-2018 AM354_RS01700 13cb3610af40879c569de04c7173c009 340 Pfam PF01769 Divalent cation transporter 210 331 3.1E-27 T 29-03-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 AM354_RS20245 cd712907e7530820c366529f3d60ee1f 197 SUPERFAMILY SSF53098 5 195 6.07E-68 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS20245 cd712907e7530820c366529f3d60ee1f 197 Pfam PF01351 Ribonuclease HII 14 190 7.4E-40 T 29-03-2018 IPR024567 Ribonuclease HII/HIII domain AM354_RS20245 cd712907e7530820c366529f3d60ee1f 197 Hamap MF_00052_B Ribonuclease HII [rnhB]. 12 191 39.24 T 29-03-2018 IPR022898 Ribonuclease HII GO:0004523 AM354_RS20245 cd712907e7530820c366529f3d60ee1f 197 Gene3D G3DSA:3.30.420.10 5 197 1.6E-68 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS02950 4995fb3c5ecc96e310353f892cc4bb18 167 Gene3D G3DSA:2.60.120.10 6 165 2.5E-23 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS02950 4995fb3c5ecc96e310353f892cc4bb18 167 Pfam PF07883 Cupin domain 52 121 2.1E-17 T 29-03-2018 IPR013096 Cupin 2, conserved barrel AM354_RS02950 4995fb3c5ecc96e310353f892cc4bb18 167 SUPERFAMILY SSF51182 25 137 4.57E-23 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS16165 417a3a292fc219273926395d988722c9 429 SUPERFAMILY SSF48013 6 149 4.91E-36 T 29-03-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 AM354_RS16165 417a3a292fc219273926395d988722c9 429 Hamap MF_01856 Ribosomal RNA small subunit methyltransferase B [rsmB]. 1 429 69.772 T 29-03-2018 IPR023541 rRNA small subunit methyltransferase B, enterobacteriaceae GO:0008649 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM354_RS16165 417a3a292fc219273926395d988722c9 429 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 316 327 - T 29-03-2018 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM354_RS16165 417a3a292fc219273926395d988722c9 429 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 8 428 5.1E-174 T 29-03-2018 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM354_RS16165 417a3a292fc219273926395d988722c9 429 Gene3D G3DSA:3.40.50.150 231 429 2.0E-56 T 29-03-2018 AM354_RS16165 417a3a292fc219273926395d988722c9 429 Gene3D G3DSA:3.30.70.1170 173 230 5.5E-20 T 29-03-2018 AM354_RS16165 417a3a292fc219273926395d988722c9 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 222 236 1.5E-31 T 29-03-2018 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM354_RS16165 417a3a292fc219273926395d988722c9 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 317 329 1.5E-31 T 29-03-2018 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM354_RS16165 417a3a292fc219273926395d988722c9 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 411 428 1.5E-31 T 29-03-2018 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM354_RS16165 417a3a292fc219273926395d988722c9 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 251 261 1.5E-31 T 29-03-2018 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM354_RS16165 417a3a292fc219273926395d988722c9 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 367 383 1.5E-31 T 29-03-2018 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM354_RS16165 417a3a292fc219273926395d988722c9 429 Gene3D G3DSA:1.10.940.10 1 145 4.9E-33 T 29-03-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 AM354_RS16165 417a3a292fc219273926395d988722c9 429 Gene3D G3DSA:1.10.287.730 146 172 5.6E-13 T 29-03-2018 AM354_RS16165 417a3a292fc219273926395d988722c9 429 Pfam PF01029 NusB family 6 127 1.6E-24 T 29-03-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 AM354_RS16165 417a3a292fc219273926395d988722c9 429 SUPERFAMILY SSF53335 141 428 6.03E-79 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS16165 417a3a292fc219273926395d988722c9 429 Pfam PF01189 16S rRNA methyltransferase RsmB/F 241 426 3.5E-75 T 29-03-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM354_RS24960 d37b608d5fe29cc5e98d17895b65c0c9 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 250 7.9E-55 T 29-03-2018 AM354_RS24960 d37b608d5fe29cc5e98d17895b65c0c9 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 4.7E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS24960 d37b608d5fe29cc5e98d17895b65c0c9 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 4.7E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS24960 d37b608d5fe29cc5e98d17895b65c0c9 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 4.7E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS24960 d37b608d5fe29cc5e98d17895b65c0c9 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 3.2E-39 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS24960 d37b608d5fe29cc5e98d17895b65c0c9 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 3.2E-39 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS24960 d37b608d5fe29cc5e98d17895b65c0c9 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 3.2E-39 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS24960 d37b608d5fe29cc5e98d17895b65c0c9 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.2E-39 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS24960 d37b608d5fe29cc5e98d17895b65c0c9 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 3.2E-39 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS24960 d37b608d5fe29cc5e98d17895b65c0c9 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 3.2E-39 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS24960 d37b608d5fe29cc5e98d17895b65c0c9 253 Gene3D G3DSA:3.40.50.720 46 253 1.9E-50 T 29-03-2018 AM354_RS24960 d37b608d5fe29cc5e98d17895b65c0c9 253 Gene3D G3DSA:3.40.50.720 1 45 2.8E-8 T 29-03-2018 AM354_RS24960 d37b608d5fe29cc5e98d17895b65c0c9 253 SUPERFAMILY SSF51735 1 251 8.95E-70 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS11110 9a74109b1ec878c3cd27561adfa0f317 145 Pfam PF03603 DNA polymerase III psi subunit 3 127 4.6E-47 T 29-03-2018 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS11110 9a74109b1ec878c3cd27561adfa0f317 145 Gene3D G3DSA:3.40.50.10220 35 129 1.5E-34 T 29-03-2018 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS11110 9a74109b1ec878c3cd27561adfa0f317 145 ProDom PD032475 DNA POLYMERASE PSI SUBUNIT III TRANSFERASE NUCLEOTIDYLTRANSFERASE III 3D-STRUCTURE DNA-DIRECTED 34 125 6.0E-34 T 29-03-2018 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS11110 9a74109b1ec878c3cd27561adfa0f317 145 SUPERFAMILY SSF102220 27 135 6.02E-34 T 29-03-2018 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS11110 9a74109b1ec878c3cd27561adfa0f317 145 PIRSF PIRSF029225 2 131 5.2E-49 T 29-03-2018 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS07230 cf86b2174679cf99b306be8b6204f37a 341 SUPERFAMILY SSF52540 1 240 2.48E-81 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS07230 cf86b2174679cf99b306be8b6204f37a 341 SUPERFAMILY SSF55021 249 340 2.86E-18 T 29-03-2018 AM354_RS07230 cf86b2174679cf99b306be8b6204f37a 341 Gene3D G3DSA:3.30.70.260 255 340 9.6E-21 T 29-03-2018 AM354_RS07230 cf86b2174679cf99b306be8b6204f37a 341 Pfam PF00005 ABC transporter 21 169 1.1E-33 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS07230 cf86b2174679cf99b306be8b6204f37a 341 Gene3D G3DSA:3.40.50.300 1 254 1.2E-76 T 29-03-2018 AM354_RS07230 cf86b2174679cf99b306be8b6204f37a 341 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS07230 cf86b2174679cf99b306be8b6204f37a 341 SMART SM00382 30 218 2.7E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS07230 cf86b2174679cf99b306be8b6204f37a 341 SMART SM00930 263 338 1.3E-22 T 29-03-2018 IPR018449 NIL domain AM354_RS07230 cf86b2174679cf99b306be8b6204f37a 341 Pfam PF09383 NIL domain 266 337 1.8E-15 T 29-03-2018 IPR018449 NIL domain AM354_RS07085 b389ce70bee4968565a5e7da88b1edfd 140 Pfam PF00293 NUDIX domain 13 118 2.6E-15 T 29-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AM354_RS07085 b389ce70bee4968565a5e7da88b1edfd 140 SUPERFAMILY SSF55811 9 136 3.66E-24 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 AM354_RS07085 b389ce70bee4968565a5e7da88b1edfd 140 Gene3D G3DSA:3.90.79.10 8 137 2.4E-20 T 29-03-2018 AM354_RS07085 b389ce70bee4968565a5e7da88b1edfd 140 ProSitePatterns PS00893 Nudix box signature. 41 62 - T 29-03-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AM354_RS09870 e76a5d2e545ac5cfbf6573ec8084250f 50 ProDom PD005979 PLASMID MEMBRANE TRANSMEMBRANE POST-SEGREGATION KILLING INHERITANCE ALTERING PERMEABILITY STABLE MAINTENANCE 1 48 1.0E-9 T 29-03-2018 IPR000021 Hok/gef cell toxic protein GO:0016020 AM354_RS09870 e76a5d2e545ac5cfbf6573ec8084250f 50 PRINTS PR00281 Hok/Gef cell toxic protein family signature 25 47 2.1E-13 T 29-03-2018 IPR000021 Hok/gef cell toxic protein GO:0016020 AM354_RS09870 e76a5d2e545ac5cfbf6573ec8084250f 50 PRINTS PR00281 Hok/Gef cell toxic protein family signature 5 23 2.1E-13 T 29-03-2018 IPR000021 Hok/gef cell toxic protein GO:0016020 AM354_RS09870 e76a5d2e545ac5cfbf6573ec8084250f 50 Pfam PF01848 Hok/gef family 6 46 8.4E-19 T 29-03-2018 IPR000021 Hok/gef cell toxic protein GO:0016020 AM354_RS09870 e76a5d2e545ac5cfbf6573ec8084250f 50 ProSitePatterns PS00556 Hok/gef family cell toxic proteins signature. 10 29 - T 29-03-2018 IPR018084 Hok/gef cell toxic protein, conserved site GO:0016020 AM354_RS15380 dc5f507276cb907bec8bf4c59f9f9079 298 SUPERFAMILY SSF51658 7 295 1.57E-58 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM354_RS15380 dc5f507276cb907bec8bf4c59f9f9079 298 TIGRFAM TIGR04379 myo_inos_iolE: myo-inosose-2 dehydratase 5 295 5.1E-119 T 29-03-2018 IPR030823 IolE/MocC family KEGG: 00562+4.2.1.44 AM354_RS15380 dc5f507276cb907bec8bf4c59f9f9079 298 Pfam PF01261 Xylose isomerase-like TIM barrel 36 250 2.4E-25 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM354_RS15380 dc5f507276cb907bec8bf4c59f9f9079 298 Gene3D G3DSA:3.20.20.150 1 297 2.1E-56 T 29-03-2018 AM354_RS15380 dc5f507276cb907bec8bf4c59f9f9079 298 Hamap MF_01672 Inosose dehydratase [iolE]. 1 298 56.256 T 29-03-2018 IPR023952 Inosose dehydratase GO:0019310|GO:0030145|GO:0050114 KEGG: 00562+4.2.1.44 AM354_RS09425 617adbf141b8165b9075624b42f01b40 174 SUPERFAMILY SSF52540 4 169 1.93E-26 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS09425 617adbf141b8165b9075624b42f01b40 174 ProSitePatterns PS01128 Shikimate kinase signature. 58 82 - T 29-03-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 AM354_RS09425 617adbf141b8165b9075624b42f01b40 174 Gene3D G3DSA:3.40.50.300 1 174 2.4E-27 T 29-03-2018 AM354_RS09425 617adbf141b8165b9075624b42f01b40 174 Hamap MF_00109 Shikimate kinase [aroK]. 2 169 24.96 T 29-03-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 AM354_RS09425 617adbf141b8165b9075624b42f01b40 174 Hamap MF_01269 Shikimate kinase 2 [aroL]. 1 173 42.764 T 29-03-2018 IPR027544 Shikimate kinase 2 GO:0004765|GO:0009073 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 AM354_RS09425 617adbf141b8165b9075624b42f01b40 174 PRINTS PR01100 Shikimate kinase family signature 29 42 4.5E-23 T 29-03-2018 AM354_RS09425 617adbf141b8165b9075624b42f01b40 174 PRINTS PR01100 Shikimate kinase family signature 95 112 4.5E-23 T 29-03-2018 AM354_RS09425 617adbf141b8165b9075624b42f01b40 174 PRINTS PR01100 Shikimate kinase family signature 74 83 4.5E-23 T 29-03-2018 AM354_RS09425 617adbf141b8165b9075624b42f01b40 174 PRINTS PR01100 Shikimate kinase family signature 5 20 4.5E-23 T 29-03-2018 AM354_RS09425 617adbf141b8165b9075624b42f01b40 174 PRINTS PR01100 Shikimate kinase family signature 57 65 4.5E-23 T 29-03-2018 AM354_RS09425 617adbf141b8165b9075624b42f01b40 174 Pfam PF01202 Shikimate kinase 11 168 3.0E-46 T 29-03-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 AM354_RS24615 9a078fd7f7445439e2f346737a2624cd 304 SUPERFAMILY SSF50475 29 83 3.71E-5 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 AM354_RS24615 9a078fd7f7445439e2f346737a2624cd 304 SUPERFAMILY SSF50475 199 286 2.4E-6 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 AM354_RS24615 9a078fd7f7445439e2f346737a2624cd 304 Gene3D G3DSA:2.30.110.10 26 135 2.8E-9 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 AM354_RS24615 9a078fd7f7445439e2f346737a2624cd 304 Gene3D G3DSA:2.30.110.10 157 303 2.0E-16 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 AM354_RS24615 9a078fd7f7445439e2f346737a2624cd 304 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 30 114 1.1E-4 T 29-03-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AM354_RS24615 9a078fd7f7445439e2f346737a2624cd 304 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 160 256 6.3E-10 T 29-03-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AM354_RS11430 bd305540b63e5203929cf6228129612b 378 Pfam PF13609 Gram-negative porin 14 263 5.1E-17 T 29-03-2018 AM354_RS11430 bd305540b63e5203929cf6228129612b 378 Gene3D G3DSA:2.40.160.10 13 377 9.1E-32 T 29-03-2018 AM354_RS11430 bd305540b63e5203929cf6228129612b 378 SUPERFAMILY SSF56935 41 366 1.98E-34 T 29-03-2018 AM354_RS03610 5e4754a7b1063df73c9e922c0c8c6b22 254 Gene3D G3DSA:2.60.40.10 26 155 1.3E-26 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS03610 5e4754a7b1063df73c9e922c0c8c6b22 254 SUPERFAMILY SSF49354 22 154 4.19E-25 T 29-03-2018 IPR008962 PapD-like AM354_RS03610 5e4754a7b1063df73c9e922c0c8c6b22 254 Gene3D G3DSA:2.60.40.10 166 245 4.0E-6 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS03610 5e4754a7b1063df73c9e922c0c8c6b22 254 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 36 153 3.6E-18 T 29-03-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 AM354_RS21240 d375bc664ffd31ad678a07d4c4f25a20 107 Hamap MF_01429 Iron-binding protein IscA [iscA]. 1 107 39.316 T 29-03-2018 IPR011302 Iron-binding protein IscA, proteobacteria GO:0005506|GO:0051536|GO:0097428 AM354_RS21240 d375bc664ffd31ad678a07d4c4f25a20 107 Gene3D G3DSA:2.60.300.12 2 107 6.1E-38 T 29-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AM354_RS21240 d375bc664ffd31ad678a07d4c4f25a20 107 SUPERFAMILY SSF89360 1 95 2.75E-33 T 29-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AM354_RS21240 d375bc664ffd31ad678a07d4c4f25a20 107 Pfam PF01521 Iron-sulphur cluster biosynthesis 1 103 5.5E-27 T 29-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AM354_RS21240 d375bc664ffd31ad678a07d4c4f25a20 107 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 88 105 - T 29-03-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 AM354_RS21240 d375bc664ffd31ad678a07d4c4f25a20 107 TIGRFAM TIGR02011 IscA: iron-sulfur cluster assembly protein IscA 3 107 8.5E-60 T 29-03-2018 IPR011302 Iron-binding protein IscA, proteobacteria GO:0005506|GO:0051536|GO:0097428 AM354_RS21240 d375bc664ffd31ad678a07d4c4f25a20 107 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 3 107 3.0E-37 T 29-03-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 AM354_RS04320 2a3e4278371f8973d8159bf8bf95b420 284 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 13 277 49.358 T 29-03-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AM354_RS04320 2a3e4278371f8973d8159bf8bf95b420 284 Pfam PF00793 DAHP synthetase I family 10 275 3.5E-67 T 29-03-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AM354_RS04320 2a3e4278371f8973d8159bf8bf95b420 284 Gene3D G3DSA:3.20.20.70 17 279 2.0E-67 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS04320 2a3e4278371f8973d8159bf8bf95b420 284 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 18 275 2.2E-118 T 29-03-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AM354_RS04320 2a3e4278371f8973d8159bf8bf95b420 284 SUPERFAMILY SSF51569 3 278 3.76E-103 T 29-03-2018 AM354_RS20525 9800ca47ae96fea7540fd08f660b9a22 143 SUPERFAMILY SSF69118 6 142 4.76E-43 T 29-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AM354_RS20525 9800ca47ae96fea7540fd08f660b9a22 143 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 29 77 2.3E-15 T 29-03-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AM354_RS20525 9800ca47ae96fea7540fd08f660b9a22 143 Gene3D G3DSA:1.20.1290.10 2 143 1.2E-36 T 29-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AM354_RS20525 9800ca47ae96fea7540fd08f660b9a22 143 Pfam PF02627 Carboxymuconolactone decarboxylase family 18 94 7.1E-19 T 29-03-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AM354_RS25335 f9b46e8bef4d37a98efa48793d044ecb 251 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 171 247 4.0E-21 T 29-03-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain AM354_RS25335 f9b46e8bef4d37a98efa48793d044ecb 251 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 120 7.7E-33 T 29-03-2018 IPR020013 Fagellar hook-basal body protein, FlgE/F/G AM354_RS25335 f9b46e8bef4d37a98efa48793d044ecb 251 Pfam PF00460 Flagella basal body rod protein 5 35 1.3E-9 T 29-03-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 AM354_RS25335 f9b46e8bef4d37a98efa48793d044ecb 251 SUPERFAMILY SSF117143 77 209 9.02E-18 T 29-03-2018 AM354_RS10830 a524a3e7819afc404c7870ca59eddc4e 321 PIRSF PIRSF037196 1 321 3.1E-158 T 29-03-2018 IPR017133 Pyoverdine chromophore biosynthesis protein PvcA AM354_RS10830 a524a3e7819afc404c7870ca59eddc4e 321 Pfam PF05141 Pyoverdine/dityrosine biosynthesis protein 46 301 1.4E-81 T 29-03-2018 IPR007817 Pyoverdine biosynthesis AM354_RS03005 cdf523a16ca27251b54e298862749b26 424 Pfam PF00579 tRNA synthetases class I (W and Y) 31 328 9.9E-89 T 29-03-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS03005 cdf523a16ca27251b54e298862749b26 424 Pfam PF01479 S4 domain 359 402 3.5E-6 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM354_RS03005 cdf523a16ca27251b54e298862749b26 424 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 52 - T 29-03-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS03005 cdf523a16ca27251b54e298862749b26 424 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 4 423 45.643 T 29-03-2018 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 AM354_RS03005 cdf523a16ca27251b54e298862749b26 424 SMART SM00363 357 419 8.8E-5 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM354_RS03005 cdf523a16ca27251b54e298862749b26 424 SUPERFAMILY SSF52374 4 328 7.36E-107 T 29-03-2018 AM354_RS03005 cdf523a16ca27251b54e298862749b26 424 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 2 423 2.2E-141 T 29-03-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AM354_RS03005 cdf523a16ca27251b54e298862749b26 424 Gene3D G3DSA:3.10.290.10 331 424 6.0E-21 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM354_RS03005 cdf523a16ca27251b54e298862749b26 424 Gene3D G3DSA:1.10.240.10 229 330 8.3E-32 T 29-03-2018 AM354_RS03005 cdf523a16ca27251b54e298862749b26 424 Gene3D G3DSA:3.40.50.620 2 228 5.2E-69 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS03005 cdf523a16ca27251b54e298862749b26 424 SUPERFAMILY SSF55174 327 423 7.98E-20 T 29-03-2018 AM354_RS03005 cdf523a16ca27251b54e298862749b26 424 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 188 210 1.3E-31 T 29-03-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AM354_RS03005 cdf523a16ca27251b54e298862749b26 424 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 46 68 1.3E-31 T 29-03-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AM354_RS03005 cdf523a16ca27251b54e298862749b26 424 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 167 182 1.3E-31 T 29-03-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AM354_RS03005 cdf523a16ca27251b54e298862749b26 424 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 221 233 1.3E-31 T 29-03-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AM354_RS19355 96974fff0400871948386fb015e8d082 496 SUPERFAMILY SSF53067 252 488 2.37E-53 T 29-03-2018 AM354_RS19355 96974fff0400871948386fb015e8d082 496 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 3 249 3.9E-79 T 29-03-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AM354_RS19355 96974fff0400871948386fb015e8d082 496 SUPERFAMILY SSF53067 3 251 4.54E-62 T 29-03-2018 AM354_RS19355 96974fff0400871948386fb015e8d082 496 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 353 373 - T 29-03-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AM354_RS19355 96974fff0400871948386fb015e8d082 496 Gene3D G3DSA:3.30.420.40 1 245 1.7E-62 T 29-03-2018 AM354_RS19355 96974fff0400871948386fb015e8d082 496 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 259 439 4.6E-23 T 29-03-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AM354_RS19355 96974fff0400871948386fb015e8d082 496 PIRSF PIRSF000538 1 494 6.7E-99 T 29-03-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AM354_RS19355 96974fff0400871948386fb015e8d082 496 Gene3D G3DSA:3.30.420.40 246 489 6.2E-46 T 29-03-2018 AM354_RS00885 fa07d7815873632d7380b7b45bcfce57 348 Pfam PF01343 Peptidase family S49 161 300 4.0E-45 T 29-03-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 AM354_RS00885 fa07d7815873632d7380b7b45bcfce57 348 Gene3D G3DSA:3.90.226.10 23 307 4.0E-32 T 29-03-2018 AM354_RS00885 fa07d7815873632d7380b7b45bcfce57 348 Pfam PF08496 Peptidase family S49 N-terminal 2 157 1.4E-59 T 29-03-2018 IPR013703 Peptidase S49, N-terminal proteobacteria GO:0004252|GO:0005886 AM354_RS00885 fa07d7815873632d7380b7b45bcfce57 348 SUPERFAMILY SSF52096 98 208 1.06E-30 T 29-03-2018 IPR029045 ClpP/crotonase-like domain AM354_RS00885 fa07d7815873632d7380b7b45bcfce57 348 SUPERFAMILY SSF52096 239 298 1.06E-30 T 29-03-2018 IPR029045 ClpP/crotonase-like domain AM354_RS01600 78ac2f222fe7150c34f36fa3a94dc8e3 310 Pfam PF03466 LysR substrate binding domain 102 303 1.7E-29 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS01600 78ac2f222fe7150c34f36fa3a94dc8e3 310 Gene3D G3DSA:3.40.190.10 189 272 1.6E-20 T 29-03-2018 AM354_RS01600 78ac2f222fe7150c34f36fa3a94dc8e3 310 SUPERFAMILY SSF46785 20 125 3.41E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS01600 78ac2f222fe7150c34f36fa3a94dc8e3 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 20 78 1.2E-17 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS01600 78ac2f222fe7150c34f36fa3a94dc8e3 310 Gene3D G3DSA:3.40.190.10 107 188 7.8E-8 T 29-03-2018 AM354_RS01600 78ac2f222fe7150c34f36fa3a94dc8e3 310 Gene3D G3DSA:1.10.10.10 13 100 6.1E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS01600 78ac2f222fe7150c34f36fa3a94dc8e3 310 SUPERFAMILY SSF53850 104 305 2.9E-35 T 29-03-2018 AM354_RS21640 7b87cae2e24c90673969d1115870bab6 593 SUPERFAMILY SSF47384 210 293 1.35E-13 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS21640 7b87cae2e24c90673969d1115870bab6 593 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 427 8.8E-8 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS21640 7b87cae2e24c90673969d1115870bab6 593 PRINTS PR00344 Bacterial sensor protein C-terminal signature 392 402 8.8E-8 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS21640 7b87cae2e24c90673969d1115870bab6 593 PRINTS PR00344 Bacterial sensor protein C-terminal signature 433 446 8.8E-8 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS21640 7b87cae2e24c90673969d1115870bab6 593 PRINTS PR00344 Bacterial sensor protein C-terminal signature 374 388 8.8E-8 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS21640 7b87cae2e24c90673969d1115870bab6 593 SMART SM00388 227 292 6.5E-9 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS21640 7b87cae2e24c90673969d1115870bab6 593 SMART SM00387 338 449 3.5E-19 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS21640 7b87cae2e24c90673969d1115870bab6 593 Gene3D G3DSA:3.40.50.2300 470 593 1.8E-15 T 29-03-2018 AM354_RS21640 7b87cae2e24c90673969d1115870bab6 593 SMART SM00448 475 587 8.7E-6 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS21640 7b87cae2e24c90673969d1115870bab6 593 Pfam PF00512 His Kinase A (phospho-acceptor) domain 228 292 2.2E-9 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS21640 7b87cae2e24c90673969d1115870bab6 593 Gene3D G3DSA:3.30.565.10 286 446 2.4E-33 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS21640 7b87cae2e24c90673969d1115870bab6 593 SUPERFAMILY SSF55874 281 445 3.93E-35 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS21640 7b87cae2e24c90673969d1115870bab6 593 Gene3D G3DSA:1.10.287.130 216 285 3.9E-8 T 29-03-2018 AM354_RS21640 7b87cae2e24c90673969d1115870bab6 593 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 338 445 3.3E-17 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS21640 7b87cae2e24c90673969d1115870bab6 593 SUPERFAMILY SSF52172 477 590 5.69E-16 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS21640 7b87cae2e24c90673969d1115870bab6 593 Pfam PF00072 Response regulator receiver domain 478 587 4.1E-9 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS17530 34eb6f729ad85673262696469c7f9234 280 Gene3D G3DSA:1.10.10.60 233 280 3.5E-11 T 29-03-2018 AM354_RS17530 34eb6f729ad85673262696469c7f9234 280 SUPERFAMILY SSF46689 234 280 3.41E-10 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS17530 34eb6f729ad85673262696469c7f9234 280 Pfam PF12833 Helix-turn-helix domain 208 280 1.2E-13 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS17530 34eb6f729ad85673262696469c7f9234 280 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 249 264 4.6E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM354_RS17530 34eb6f729ad85673262696469c7f9234 280 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 264 280 4.6E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM354_RS17530 34eb6f729ad85673262696469c7f9234 280 Gene3D G3DSA:1.10.10.10 103 221 7.5E-4 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS17530 34eb6f729ad85673262696469c7f9234 280 SMART SM00342 198 280 6.5E-16 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS18900 bf6a57e67c134e87875156cb1a9ccee6 170 Gene3D G3DSA:2.10.290.10 75 169 3.9E-4 T 29-03-2018 AM354_RS18900 bf6a57e67c134e87875156cb1a9ccee6 170 Pfam PF10263 SprT-like family 22 117 6.2E-17 T 29-03-2018 IPR006640 SprT-like AM354_RS18900 bf6a57e67c134e87875156cb1a9ccee6 170 SMART SM00731 16 165 2.7E-59 T 29-03-2018 IPR006640 SprT-like AM354_RS18900 bf6a57e67c134e87875156cb1a9ccee6 170 Hamap MF_00746 Protein SprT [sprT]. 12 165 40.551 T 29-03-2018 IPR023483 Uncharacterised protein family SprT AM354_RS18900 bf6a57e67c134e87875156cb1a9ccee6 170 Pfam PF17283 SprT-like zinc ribbon domain 125 165 1.2E-12 T 29-03-2018 IPR035240 SprT-like, zinc ribbon domain AM354_RS23465 590ed78634e3ec20e74bff78d171a250 80 Pfam PF06183 DinI-like family 17 76 5.3E-23 T 29-03-2018 IPR010391 DNA damage-inducible protein DinI-like AM354_RS23465 590ed78634e3ec20e74bff78d171a250 80 Gene3D G3DSA:3.30.910.10 1 76 1.6E-28 T 29-03-2018 IPR010391 DNA damage-inducible protein DinI-like AM354_RS23465 590ed78634e3ec20e74bff78d171a250 80 SUPERFAMILY SSF54857 1 78 1.44E-24 T 29-03-2018 IPR010391 DNA damage-inducible protein DinI-like AM354_RS19025 fc4f7d399081491ec90e7352019426ec 284 SUPERFAMILY SSF52374 1 281 7.04E-106 T 29-03-2018 AM354_RS19025 fc4f7d399081491ec90e7352019426ec 284 Gene3D G3DSA:3.30.1300.10 177 284 6.1E-30 T 29-03-2018 AM354_RS19025 fc4f7d399081491ec90e7352019426ec 284 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 1 280 7.8E-112 T 29-03-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 AM354_RS19025 fc4f7d399081491ec90e7352019426ec 284 Hamap MF_00158 Pantothenate synthetase [panC]. 2 280 39.639 T 29-03-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 AM354_RS19025 fc4f7d399081491ec90e7352019426ec 284 Pfam PF02569 Pantoate-beta-alanine ligase 3 278 2.5E-100 T 29-03-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 AM354_RS19025 fc4f7d399081491ec90e7352019426ec 284 Gene3D G3DSA:3.40.50.620 1 176 5.5E-75 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS10160 2826d8a1f492806d32acfe1bae7f4526 61 Pfam PF02599 Global regulator protein family 1 52 2.5E-27 T 29-03-2018 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 AM354_RS10160 2826d8a1f492806d32acfe1bae7f4526 61 Hamap MF_00167 Carbon storage regulator [csrA]. 1 61 20.555 T 29-03-2018 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 AM354_RS10160 2826d8a1f492806d32acfe1bae7f4526 61 SUPERFAMILY SSF117130 1 54 3.66E-21 T 29-03-2018 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 AM354_RS10160 2826d8a1f492806d32acfe1bae7f4526 61 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 58 2.3E-31 T 29-03-2018 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 AM354_RS10160 2826d8a1f492806d32acfe1bae7f4526 61 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 48 2.0E-20 T 29-03-2018 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 AM354_RS10655 cf372ac11005a57dd3e55796c1167112 466 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 1 466 62.169 T 29-03-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 AM354_RS10655 cf372ac11005a57dd3e55796c1167112 466 ProSitePatterns PS00450 Aconitase family signature 1. 339 355 - T 29-03-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AM354_RS10655 cf372ac11005a57dd3e55796c1167112 466 Gene3D G3DSA:3.30.499.10 319 466 1.2E-52 T 29-03-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 AM354_RS10655 cf372ac11005a57dd3e55796c1167112 466 Gene3D G3DSA:3.40.1060.10 153 288 6.7E-44 T 29-03-2018 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33 AM354_RS10655 cf372ac11005a57dd3e55796c1167112 466 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 1 465 5.3E-270 T 29-03-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 AM354_RS10655 cf372ac11005a57dd3e55796c1167112 466 SUPERFAMILY SSF53732 2 465 6.15E-169 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM354_RS10655 cf372ac11005a57dd3e55796c1167112 466 PRINTS PR00415 Aconitase family signature 195 208 3.3E-50 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM354_RS10655 cf372ac11005a57dd3e55796c1167112 466 PRINTS PR00415 Aconitase family signature 286 300 3.3E-50 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM354_RS10655 cf372ac11005a57dd3e55796c1167112 466 PRINTS PR00415 Aconitase family signature 133 148 3.3E-50 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM354_RS10655 cf372ac11005a57dd3e55796c1167112 466 PRINTS PR00415 Aconitase family signature 119 132 3.3E-50 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM354_RS10655 cf372ac11005a57dd3e55796c1167112 466 PRINTS PR00415 Aconitase family signature 82 95 3.3E-50 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM354_RS10655 cf372ac11005a57dd3e55796c1167112 466 PRINTS PR00415 Aconitase family signature 209 222 3.3E-50 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM354_RS10655 cf372ac11005a57dd3e55796c1167112 466 PRINTS PR00415 Aconitase family signature 108 116 3.3E-50 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM354_RS10655 cf372ac11005a57dd3e55796c1167112 466 PRINTS PR00415 Aconitase family signature 343 354 3.3E-50 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM354_RS10655 cf372ac11005a57dd3e55796c1167112 466 PRINTS PR00415 Aconitase family signature 399 412 3.3E-50 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM354_RS10655 cf372ac11005a57dd3e55796c1167112 466 Gene3D G3DSA:3.30.499.10 1 152 6.3E-40 T 29-03-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 AM354_RS10655 cf372ac11005a57dd3e55796c1167112 466 Pfam PF00330 Aconitase family (aconitate hydratase) 8 457 3.1E-163 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM354_RS10655 cf372ac11005a57dd3e55796c1167112 466 ProSitePatterns PS01244 Aconitase family signature 2. 399 412 - T 29-03-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AM354_RS05470 4ed61dfe1b0f0eccb0f12c1a2c88271f 425 SUPERFAMILY SSF53901 228 422 5.77E-63 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS05470 4ed61dfe1b0f0eccb0f12c1a2c88271f 425 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 4 420 2.7E-159 T 29-03-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 AM354_RS05470 4ed61dfe1b0f0eccb0f12c1a2c88271f 425 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 164 180 - T 29-03-2018 IPR018201 Beta-ketoacyl synthase, active site AM354_RS05470 4ed61dfe1b0f0eccb0f12c1a2c88271f 425 Gene3D G3DSA:3.40.47.10 6 270 1.0E-75 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS05470 4ed61dfe1b0f0eccb0f12c1a2c88271f 425 SUPERFAMILY SSF53901 3 262 2.72E-68 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS05470 4ed61dfe1b0f0eccb0f12c1a2c88271f 425 SMART SM00825 Beta-ketoacyl synthase 6 424 1.1E-13 T 29-03-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AM354_RS05470 4ed61dfe1b0f0eccb0f12c1a2c88271f 425 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 4 257 3.1E-56 T 29-03-2018 IPR014030 Beta-ketoacyl synthase, N-terminal AM354_RS05470 4ed61dfe1b0f0eccb0f12c1a2c88271f 425 PIRSF PIRSF000447 1 424 5.1E-156 T 29-03-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 AM354_RS05470 4ed61dfe1b0f0eccb0f12c1a2c88271f 425 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 265 378 1.4E-33 T 29-03-2018 IPR014031 Beta-ketoacyl synthase, C-terminal AM354_RS05470 4ed61dfe1b0f0eccb0f12c1a2c88271f 425 Gene3D G3DSA:3.40.47.10 273 425 1.9E-46 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS12095 03537876412c778eb15357314e8475bd 323 Pfam PF00892 EamA-like transporter family 10 144 8.0E-25 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM354_RS12095 03537876412c778eb15357314e8475bd 323 Pfam PF00892 EamA-like transporter family 161 291 1.3E-14 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM354_RS12095 03537876412c778eb15357314e8475bd 323 SUPERFAMILY SSF103481 43 145 2.35E-12 T 29-03-2018 AM354_RS00370 eb7f5e2a067db5893049a146222c5954 190 SUPERFAMILY SSF102405 2 180 3.21E-62 T 29-03-2018 AM354_RS00370 eb7f5e2a067db5893049a146222c5954 190 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 4 180 1.0E-61 T 29-03-2018 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG AM354_RS00370 eb7f5e2a067db5893049a146222c5954 190 Gene3D G3DSA:3.40.50.450 1 190 3.3E-60 T 29-03-2018 AM354_RS00370 eb7f5e2a067db5893049a146222c5954 190 Pfam PF03641 Possible lysine decarboxylase 47 176 7.9E-41 T 29-03-2018 IPR031100 LOG family AM354_RS13200 415b7dd30b78484380474e79205b64e5 156 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 27 154 2.3E-16 T 29-03-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 AM354_RS13200 415b7dd30b78484380474e79205b64e5 156 Pfam PF03061 Thioesterase superfamily 59 144 2.2E-17 T 29-03-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AM354_RS13200 415b7dd30b78484380474e79205b64e5 156 Gene3D G3DSA:3.10.129.10 6 156 1.4E-30 T 29-03-2018 AM354_RS13200 415b7dd30b78484380474e79205b64e5 156 SUPERFAMILY SSF54637 13 155 4.6E-27 T 29-03-2018 IPR029069 HotDog domain AM354_RS24740 320cc3aca2b6b956c989e9fa6112d576 306 TIGRFAM TIGR02207 lipid_A_htrB: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 6 306 3.2E-140 T 29-03-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 KEGG: 00600+2.3.1.24 AM354_RS24740 320cc3aca2b6b956c989e9fa6112d576 306 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 4 306 51.744 T 29-03-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 KEGG: 00600+2.3.1.24 AM354_RS24740 320cc3aca2b6b956c989e9fa6112d576 306 PIRSF PIRSF026649 3 306 3.3E-97 T 29-03-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 AM354_RS24740 320cc3aca2b6b956c989e9fa6112d576 306 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 6 297 3.0E-99 T 29-03-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 AM354_RS14540 a224b65392d4a924efe9a6f0781b4b3d 336 TIGRFAM TIGR00330 glpX: fructose-1,6-bisphosphatase, class II 1 330 6.9E-178 T 29-03-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 AM354_RS14540 a224b65392d4a924efe9a6f0781b4b3d 336 SUPERFAMILY SSF56655 1 325 9.16E-110 T 29-03-2018 AM354_RS14540 a224b65392d4a924efe9a6f0781b4b3d 336 Pfam PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded 3 322 2.6E-133 T 29-03-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 AM354_RS14540 a224b65392d4a924efe9a6f0781b4b3d 336 PIRSF PIRSF004532 1 332 3.2E-140 T 29-03-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 AM354_RS14540 a224b65392d4a924efe9a6f0781b4b3d 336 Gene3D G3DSA:3.30.540.10 1 150 8.6E-60 T 29-03-2018 AM354_RS14540 a224b65392d4a924efe9a6f0781b4b3d 336 Gene3D G3DSA:3.30.540.10 152 336 5.2E-53 T 29-03-2018 AM354_RS19855 a1aab4cc128c5804aef0e08789cb40e1 406 Gene3D G3DSA:1.20.1250.20 9 214 1.3E-20 T 29-03-2018 AM354_RS19855 a1aab4cc128c5804aef0e08789cb40e1 406 Pfam PF07690 Major Facilitator Superfamily 37 234 4.3E-11 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS19855 a1aab4cc128c5804aef0e08789cb40e1 406 Gene3D G3DSA:1.20.1250.20 215 404 2.2E-13 T 29-03-2018 AM354_RS19855 a1aab4cc128c5804aef0e08789cb40e1 406 SUPERFAMILY SSF103473 11 403 1.28E-42 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS16840 3a2ec55a274b50b4764202edcc9080d5 98 TIGRFAM TIGR03578 EF_0831: conserved hypothetical protein EF_0831/AHA_3912 2 96 5.6E-38 T 29-03-2018 IPR020037 Protein of unknown function DUF4312 AM354_RS16840 3a2ec55a274b50b4764202edcc9080d5 98 Pfam PF14189 Domain of unknown function (DUF4312) 6 88 7.8E-37 T 29-03-2018 IPR020037 Protein of unknown function DUF4312 AM354_RS09185 0bc496ea52e8c7a20732d9fad3ce873e 324 Pfam PF00248 Aldo/keto reductase family 15 313 8.9E-79 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS09185 0bc496ea52e8c7a20732d9fad3ce873e 324 SUPERFAMILY SSF51430 1 320 1.02E-104 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS09185 0bc496ea52e8c7a20732d9fad3ce873e 324 Gene3D G3DSA:3.20.20.100 1 321 4.8E-102 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS13905 3cdfbf08dcfc232f8dfa67392f721f45 241 SUPERFAMILY SSF56214 98 196 1.17E-6 T 29-03-2018 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 AM354_RS13905 3cdfbf08dcfc232f8dfa67392f721f45 241 Gene3D G3DSA:3.90.470.20 6 109 5.4E-9 T 29-03-2018 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 AM354_RS13905 3cdfbf08dcfc232f8dfa67392f721f45 241 SUPERFAMILY SSF56214 22 90 3.98E-5 T 29-03-2018 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 AM354_RS13905 3cdfbf08dcfc232f8dfa67392f721f45 241 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 99 186 1.6E-4 T 29-03-2018 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 AM354_RS13905 3cdfbf08dcfc232f8dfa67392f721f45 241 Gene3D G3DSA:3.90.470.20 110 222 6.6E-4 T 29-03-2018 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 AM354_RS25670 ff20386d34217b4f13e69d60fa067399 377 Gene3D G3DSA:3.10.560.10 252 344 7.6E-16 T 29-03-2018 AM354_RS25670 ff20386d34217b4f13e69d60fa067399 377 Gene3D G3DSA:3.10.560.10 161 251 1.1E-25 T 29-03-2018 AM354_RS25670 ff20386d34217b4f13e69d60fa067399 377 Gene3D G3DSA:1.20.5.70 345 374 1.1E-15 T 29-03-2018 AM354_RS25670 ff20386d34217b4f13e69d60fa067399 377 Gene3D G3DSA:3.30.1950.10 89 160 1.8E-25 T 29-03-2018 AM354_RS25670 ff20386d34217b4f13e69d60fa067399 377 Pfam PF02563 Polysaccharide biosynthesis/export protein 81 165 6.0E-27 T 29-03-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 AM354_RS25670 ff20386d34217b4f13e69d60fa067399 377 Pfam PF10531 SLBB domain 173 218 5.4E-8 T 29-03-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS24595 d919cf7ffbec25c9c802c42ea53192ac 123 SUPERFAMILY SSF54593 11 120 3.09E-21 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS24595 d919cf7ffbec25c9c802c42ea53192ac 123 Gene3D G3DSA:3.10.180.10 2 123 8.3E-17 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS14690 08eb9a84ecc879cb1381c5f72c443557 623 Pfam PF07715 TonB-dependent Receptor Plug Domain 46 152 5.5E-28 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS14690 08eb9a84ecc879cb1381c5f72c443557 623 Gene3D G3DSA:2.170.130.10 22 160 3.1E-33 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS14690 08eb9a84ecc879cb1381c5f72c443557 623 Gene3D G3DSA:2.40.170.20 161 623 4.1E-77 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS14690 08eb9a84ecc879cb1381c5f72c443557 623 Pfam PF00593 TonB dependent receptor 246 622 2.5E-49 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS14690 08eb9a84ecc879cb1381c5f72c443557 623 SUPERFAMILY SSF56935 33 623 5.49E-122 T 29-03-2018 AM354_RS14690 08eb9a84ecc879cb1381c5f72c443557 623 TIGRFAM TIGR01779 TonB-B12: TonB-dependent vitamin B12 receptor 5 623 1.1E-235 T 29-03-2018 IPR010101 TonB-dependent vitamin B12 transporter BtuB GO:0004872|GO:0015235|GO:0015889|GO:0016020 AM354_RS14690 08eb9a84ecc879cb1381c5f72c443557 623 Hamap MF_01531 Vitamin B12 transporter BtuB [btuB]. 4 623 35.898 T 29-03-2018 IPR010101 TonB-dependent vitamin B12 transporter BtuB GO:0004872|GO:0015235|GO:0015889|GO:0016020 AM354_RS14690 08eb9a84ecc879cb1381c5f72c443557 623 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 606 623 - T 29-03-2018 IPR010917 TonB-dependent receptor, conserved site AM354_RS24135 60a65ea2ae8940e446306301b291d20d 296 Gene3D G3DSA:3.40.190.10 95 177 6.2E-16 T 29-03-2018 AM354_RS24135 60a65ea2ae8940e446306301b291d20d 296 Pfam PF03466 LysR substrate binding domain 96 293 1.0E-32 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS24135 60a65ea2ae8940e446306301b291d20d 296 Gene3D G3DSA:3.40.190.10 178 262 4.8E-17 T 29-03-2018 AM354_RS24135 60a65ea2ae8940e446306301b291d20d 296 Gene3D G3DSA:1.10.10.10 7 89 1.5E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS24135 60a65ea2ae8940e446306301b291d20d 296 SUPERFAMILY SSF53850 96 294 3.44E-35 T 29-03-2018 AM354_RS24135 60a65ea2ae8940e446306301b291d20d 296 SUPERFAMILY SSF46785 6 115 1.5E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS24135 60a65ea2ae8940e446306301b291d20d 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 68 2.5E-16 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS16340 baaad1166385664162abbcbebc89a5b9 330 Gene3D G3DSA:3.40.50.300 1 249 3.7E-75 T 29-03-2018 AM354_RS16340 baaad1166385664162abbcbebc89a5b9 330 SUPERFAMILY SSF50331 256 312 7.37E-6 T 29-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal AM354_RS16340 baaad1166385664162abbcbebc89a5b9 330 SMART SM00382 28 211 1.3E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS16340 baaad1166385664162abbcbebc89a5b9 330 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS16340 baaad1166385664162abbcbebc89a5b9 330 Pfam PF00005 ABC transporter 20 161 2.0E-35 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS16340 baaad1166385664162abbcbebc89a5b9 330 SUPERFAMILY SSF52540 4 242 1.29E-85 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS16340 baaad1166385664162abbcbebc89a5b9 330 Pfam PF08402 TOBE domain 257 323 1.9E-4 T 29-03-2018 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 AM354_RS15920 a1af813abe0f0f02de3a93774dff2fc4 195 Gene3D G3DSA:3.10.50.40 1 164 1.4E-28 T 29-03-2018 AM354_RS15920 a1af813abe0f0f02de3a93774dff2fc4 195 SUPERFAMILY SSF54534 2 140 1.1E-33 T 29-03-2018 AM354_RS15920 a1af813abe0f0f02de3a93774dff2fc4 195 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 5 136 6.6E-9 T 29-03-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain AM354_RS02505 60ba2b85a3f2c305089207232fc07440 333 SUPERFAMILY SSF53474 28 331 1.98E-60 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS02505 60ba2b85a3f2c305089207232fc07440 333 PRINTS PR00412 Epoxide hydrolase signature 73 91 3.1E-8 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AM354_RS02505 60ba2b85a3f2c305089207232fc07440 333 PRINTS PR00412 Epoxide hydrolase signature 93 108 3.1E-8 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AM354_RS02505 60ba2b85a3f2c305089207232fc07440 333 PRINTS PR00412 Epoxide hydrolase signature 138 151 3.1E-8 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AM354_RS02505 60ba2b85a3f2c305089207232fc07440 333 PRINTS PR00412 Epoxide hydrolase signature 308 330 3.1E-8 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AM354_RS02505 60ba2b85a3f2c305089207232fc07440 333 PRINTS PR00412 Epoxide hydrolase signature 152 165 3.1E-8 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AM354_RS02505 60ba2b85a3f2c305089207232fc07440 333 PRINTS PR00111 Alpha/beta hydrolase fold signature 152 165 3.7E-10 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS02505 60ba2b85a3f2c305089207232fc07440 333 PRINTS PR00111 Alpha/beta hydrolase fold signature 93 108 3.7E-10 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS02505 60ba2b85a3f2c305089207232fc07440 333 PRINTS PR00111 Alpha/beta hydrolase fold signature 138 151 3.7E-10 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS02505 60ba2b85a3f2c305089207232fc07440 333 Pfam PF00561 alpha/beta hydrolase fold 70 199 1.7E-19 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS02505 60ba2b85a3f2c305089207232fc07440 333 Gene3D G3DSA:3.40.50.1820 20 332 5.2E-64 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS24800 c6e52c974ee4ce76b06b8799aa97f00d 213 SUPERFAMILY SSF55729 4 177 1.52E-37 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS24800 c6e52c974ee4ce76b06b8799aa97f00d 213 Gene3D G3DSA:3.40.630.30 2 185 2.3E-29 T 29-03-2018 AM354_RS24800 c6e52c974ee4ce76b06b8799aa97f00d 213 Pfam PF13302 Acetyltransferase (GNAT) domain 27 153 1.3E-14 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS06855 257efe4a1130beea5d2e6cbc920b8178 209 Pfam PF01613 Flavin reductase like domain 28 176 3.0E-16 T 29-03-2018 IPR002563 Flavin reductase like domain GO:0010181 AM354_RS06855 257efe4a1130beea5d2e6cbc920b8178 209 SMART SM00903 26 178 2.7E-15 T 29-03-2018 IPR002563 Flavin reductase like domain GO:0010181 AM354_RS06855 257efe4a1130beea5d2e6cbc920b8178 209 Gene3D G3DSA:2.30.110.10 12 195 3.1E-44 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 AM354_RS06855 257efe4a1130beea5d2e6cbc920b8178 209 SUPERFAMILY SSF50475 5 193 4.12E-49 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 AM354_RS05575 ccbc3116906b2358c28f4d7b4b55a066 215 Gene3D G3DSA:3.60.15.10 1 214 1.8E-45 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS05575 ccbc3116906b2358c28f4d7b4b55a066 215 SUPERFAMILY SSF56281 2 209 1.07E-61 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS05575 ccbc3116906b2358c28f4d7b4b55a066 215 Pfam PF00753 Metallo-beta-lactamase superfamily 10 192 1.7E-32 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS05575 ccbc3116906b2358c28f4d7b4b55a066 215 SMART SM00849 12 192 4.6E-43 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS07880 4caf151566474e01298543e6c0fea011 201 Gene3D G3DSA:3.40.50.2300 1 125 8.3E-30 T 29-03-2018 AM354_RS07880 4caf151566474e01298543e6c0fea011 201 SMART SM00448 2 115 1.5E-22 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS07880 4caf151566474e01298543e6c0fea011 201 SUPERFAMILY SSF46894 136 198 3.06E-19 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS07880 4caf151566474e01298543e6c0fea011 201 SUPERFAMILY SSF52172 1 126 1.57E-29 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS07880 4caf151566474e01298543e6c0fea011 201 ProSitePatterns PS00622 LuxR-type HTH domain signature. 156 183 - T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS07880 4caf151566474e01298543e6c0fea011 201 SMART SM00421 139 196 1.1E-23 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS07880 4caf151566474e01298543e6c0fea011 201 Gene3D G3DSA:1.10.10.10 126 200 1.5E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS07880 4caf151566474e01298543e6c0fea011 201 Pfam PF00072 Response regulator receiver domain 5 116 1.2E-24 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS07880 4caf151566474e01298543e6c0fea011 201 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 172 2.8E-13 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS07880 4caf151566474e01298543e6c0fea011 201 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 142 156 2.8E-13 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS07880 4caf151566474e01298543e6c0fea011 201 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 172 184 2.8E-13 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS07880 4caf151566474e01298543e6c0fea011 201 Pfam PF00196 Bacterial regulatory proteins, luxR family 142 195 3.2E-19 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS21910 0a38cd43dd4f5119d679223d8716a6b0 482 Gene3D G3DSA:3.40.50.450 284 447 1.3E-5 T 29-03-2018 AM354_RS21910 0a38cd43dd4f5119d679223d8716a6b0 482 Gene3D G3DSA:3.40.50.1220 10 283 0.0016 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM354_RS21910 0a38cd43dd4f5119d679223d8716a6b0 482 Pfam PF13289 SIR2-like domain 105 233 1.5E-29 T 29-03-2018 AM354_RS21910 0a38cd43dd4f5119d679223d8716a6b0 482 SUPERFAMILY SSF52467 19 208 8.41E-10 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM354_RS04510 6c4a3403a4665770dcb7aedd15244bc3 651 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 132 563 5.0E-92 T 29-03-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit AM354_RS04510 6c4a3403a4665770dcb7aedd15244bc3 651 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 31 641 6.8E-198 T 29-03-2018 IPR011853 TRAP transporter, 4TM/12TM fusion protein AM354_RS04370 ecde3bf9c0ae39e34696ff81966de625 196 Pfam PF01195 Peptidyl-tRNA hydrolase 6 189 1.1E-53 T 29-03-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AM354_RS04370 ecde3bf9c0ae39e34696ff81966de625 196 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 17 30 - T 29-03-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 AM354_RS04370 ecde3bf9c0ae39e34696ff81966de625 196 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 4 191 6.8E-70 T 29-03-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AM354_RS04370 ecde3bf9c0ae39e34696ff81966de625 196 SUPERFAMILY SSF53178 4 193 3.79E-70 T 29-03-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AM354_RS04370 ecde3bf9c0ae39e34696ff81966de625 196 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 111 121 - T 29-03-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 AM354_RS04370 ecde3bf9c0ae39e34696ff81966de625 196 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 4 183 35.88 T 29-03-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AM354_RS04370 ecde3bf9c0ae39e34696ff81966de625 196 Gene3D G3DSA:3.40.50.1470 1 195 8.7E-68 T 29-03-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AM354_RS02880 5483b00db202b6d8e618fe2fdce944bd 346 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 121 2.9E-24 T 29-03-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AM354_RS02880 5483b00db202b6d8e618fe2fdce944bd 346 Gene3D G3DSA:3.30.360.10 135 346 2.6E-42 T 29-03-2018 AM354_RS02880 5483b00db202b6d8e618fe2fdce944bd 346 SUPERFAMILY SSF51735 3 195 2.36E-50 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS02880 5483b00db202b6d8e618fe2fdce944bd 346 Gene3D G3DSA:3.40.50.720 1 134 3.3E-37 T 29-03-2018 AM354_RS02880 5483b00db202b6d8e618fe2fdce944bd 346 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 134 241 1.1E-17 T 29-03-2018 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 AM354_RS24465 13e068349d18cddf3c8d958b4bdf13a4 268 SUPERFAMILY SSF46785 23 93 1.02E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS24465 13e068349d18cddf3c8d958b4bdf13a4 268 SMART SM00346 22 111 7.2E-24 T 29-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AM354_RS24465 13e068349d18cddf3c8d958b4bdf13a4 268 SUPERFAMILY SSF55781 88 266 8.83E-50 T 29-03-2018 IPR029016 GAF domain-like AM354_RS24465 13e068349d18cddf3c8d958b4bdf13a4 268 Pfam PF09339 IclR helix-turn-helix domain 24 72 5.2E-15 T 29-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AM354_RS24465 13e068349d18cddf3c8d958b4bdf13a4 268 Gene3D G3DSA:1.10.10.10 15 89 5.4E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS24465 13e068349d18cddf3c8d958b4bdf13a4 268 Pfam PF01614 Bacterial transcriptional regulator 138 263 1.5E-30 T 29-03-2018 IPR014757 Transcription regulator IclR, C-terminal AM354_RS24465 13e068349d18cddf3c8d958b4bdf13a4 268 Gene3D G3DSA:3.30.450.40 90 268 5.3E-55 T 29-03-2018 IPR029016 GAF domain-like AM354_RS24465 13e068349d18cddf3c8d958b4bdf13a4 268 TIGRFAM TIGR02431 pcaR_pcaU: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family 19 264 3.3E-93 T 29-03-2018 IPR012794 Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR GO:0003677|GO:0045893|GO:0046278 AM354_RS04010 21985eeb8a4b152c1c53d9f5b5b956cd 94 Pfam PF01527 Transposase 5 72 2.4E-15 T 29-03-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AM354_RS04010 21985eeb8a4b152c1c53d9f5b5b956cd 94 Gene3D G3DSA:1.10.10.60 7 88 4.5E-18 T 29-03-2018 AM354_RS04010 21985eeb8a4b152c1c53d9f5b5b956cd 94 SUPERFAMILY SSF46689 1 92 4.3E-20 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS11585 8fbf068336b99af1d39985caaf7b0eef 152 Pfam PF03852 DNA mismatch endonuclease Vsr 1 71 4.3E-28 T 29-03-2018 IPR004603 DNA mismatch endonuclease vsr GO:0004519|GO:0006298 AM354_RS11585 8fbf068336b99af1d39985caaf7b0eef 152 TIGRFAM TIGR00632 vsr: DNA mismatch endonuclease Vsr 1 117 2.6E-42 T 29-03-2018 IPR004603 DNA mismatch endonuclease vsr GO:0004519|GO:0006298 AM354_RS11585 8fbf068336b99af1d39985caaf7b0eef 152 Gene3D G3DSA:3.40.960.10 20 141 4.8E-30 T 29-03-2018 AM354_RS11585 8fbf068336b99af1d39985caaf7b0eef 152 PIRSF PIRSF018267 1 140 4.6E-53 T 29-03-2018 IPR004603 DNA mismatch endonuclease vsr GO:0004519|GO:0006298 AM354_RS11585 8fbf068336b99af1d39985caaf7b0eef 152 SUPERFAMILY SSF52980 1 136 1.55E-50 T 29-03-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AM354_RS10950 19234b1c23307c5c79be1337f47233cd 159 Pfam PF05981 CreA protein 24 155 2.7E-58 T 29-03-2018 IPR010292 Uncharacterised protein family CreA AM354_RS10950 19234b1c23307c5c79be1337f47233cd 159 PIRSF PIRSF003174 1 159 8.2E-70 T 29-03-2018 IPR010292 Uncharacterised protein family CreA AM354_RS02790 8f096580c2cc7d79db2cd8cd7b7dfb37 229 Pfam PF13280 WYL domain 141 227 6.0E-14 T 29-03-2018 IPR026881 WYL domain AM354_RS02790 8f096580c2cc7d79db2cd8cd7b7dfb37 229 SUPERFAMILY SSF46785 1 62 1.05E-9 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS02790 8f096580c2cc7d79db2cd8cd7b7dfb37 229 Gene3D G3DSA:1.10.10.10 1 64 6.4E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS02790 8f096580c2cc7d79db2cd8cd7b7dfb37 229 Pfam PF08279 HTH domain 6 59 5.2E-15 T 29-03-2018 IPR013196 Helix-turn-helix, type 11 AM354_RS10395 1152024af25f12f8cf6f4365dd2928bd 545 TIGRFAM TIGR00337 PyrG: CTP synthase 2 535 2.5E-265 T 29-03-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 AM354_RS10395 1152024af25f12f8cf6f4365dd2928bd 545 Gene3D G3DSA:3.40.50.300 1 284 2.9E-129 T 29-03-2018 AM354_RS10395 1152024af25f12f8cf6f4365dd2928bd 545 SUPERFAMILY SSF52317 289 541 7.8E-88 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS10395 1152024af25f12f8cf6f4365dd2928bd 545 Gene3D G3DSA:3.40.50.880 286 543 3.2E-74 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS10395 1152024af25f12f8cf6f4365dd2928bd 545 SUPERFAMILY SSF52540 3 269 2.16E-122 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS10395 1152024af25f12f8cf6f4365dd2928bd 545 Pfam PF06418 CTP synthase N-terminus 5 266 4.0E-126 T 29-03-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 AM354_RS10395 1152024af25f12f8cf6f4365dd2928bd 545 Pfam PF00117 Glutamine amidotransferase class-I 301 535 8.1E-64 T 29-03-2018 IPR017926 Glutamine amidotransferase AM354_RS10395 1152024af25f12f8cf6f4365dd2928bd 545 Hamap MF_01227 CTP synthase [pyrG]. 3 540 51.286 T 29-03-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 AM354_RS07200 13f5cff8b805bb4b03908c47df1fd80f 335 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 196 206 3.2E-22 T 29-03-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AM354_RS07200 13f5cff8b805bb4b03908c47df1fd80f 335 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 144 165 3.2E-22 T 29-03-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AM354_RS07200 13f5cff8b805bb4b03908c47df1fd80f 335 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 15 31 3.2E-22 T 29-03-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AM354_RS07200 13f5cff8b805bb4b03908c47df1fd80f 335 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 66 85 3.2E-22 T 29-03-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AM354_RS07200 13f5cff8b805bb4b03908c47df1fd80f 335 Gene3D G3DSA:1.10.240.10 203 325 1.4E-29 T 29-03-2018 AM354_RS07200 13f5cff8b805bb4b03908c47df1fd80f 335 Pfam PF00579 tRNA synthetases class I (W and Y) 4 284 1.4E-50 T 29-03-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS07200 13f5cff8b805bb4b03908c47df1fd80f 335 Gene3D G3DSA:3.40.50.620 1 202 3.7E-56 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS07200 13f5cff8b805bb4b03908c47df1fd80f 335 SUPERFAMILY SSF52374 4 329 1.25E-76 T 29-03-2018 AM354_RS07200 13f5cff8b805bb4b03908c47df1fd80f 335 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 3 329 3.5E-69 T 29-03-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AM354_RS15580 37a56163f5c9dc037982c7ed72b38dd9 256 SUPERFAMILY SSF53474 4 255 2.4E-46 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS15580 37a56163f5c9dc037982c7ed72b38dd9 256 TIGRFAM TIGR01738 bioH: pimelyl-[acyl-carrier protein] methyl ester esterase 10 253 3.4E-103 T 29-03-2018 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 KEGG: 00780+3.1.1.85|MetaCyc: PWY-6519 AM354_RS15580 37a56163f5c9dc037982c7ed72b38dd9 256 Pfam PF00561 alpha/beta hydrolase fold 16 242 1.3E-25 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS15580 37a56163f5c9dc037982c7ed72b38dd9 256 Hamap MF_01260 Pimeloyl-[acyl-carrier protein] methyl ester esterase [bioH]. 4 254 47.641 T 29-03-2018 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 KEGG: 00780+3.1.1.85|MetaCyc: PWY-6519 AM354_RS15580 37a56163f5c9dc037982c7ed72b38dd9 256 Gene3D G3DSA:3.40.50.1820 1 256 3.8E-53 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS01645 13a6448a34fb54720be6957febb6321c 275 Pfam PF12833 Helix-turn-helix domain 193 270 3.0E-18 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS01645 13a6448a34fb54720be6957febb6321c 275 Gene3D G3DSA:1.10.10.60 226 275 1.4E-12 T 29-03-2018 AM354_RS01645 13a6448a34fb54720be6957febb6321c 275 SUPERFAMILY SSF46689 223 272 2.94E-8 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS01645 13a6448a34fb54720be6957febb6321c 275 SUPERFAMILY SSF46689 171 220 1.43E-8 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS01645 13a6448a34fb54720be6957febb6321c 275 SUPERFAMILY SSF51215 32 150 2.22E-19 T 29-03-2018 AM354_RS01645 13a6448a34fb54720be6957febb6321c 275 Gene3D G3DSA:1.10.10.60 168 225 1.1E-13 T 29-03-2018 AM354_RS01645 13a6448a34fb54720be6957febb6321c 275 Pfam PF02311 AraC-like ligand binding domain 24 151 1.5E-25 T 29-03-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AM354_RS01645 13a6448a34fb54720be6957febb6321c 275 Gene3D G3DSA:2.60.120.10 12 143 1.2E-7 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS01645 13a6448a34fb54720be6957febb6321c 275 SMART SM00342 187 269 1.2E-23 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS11495 940f1ac5c36450a413ca72dc8da83070 229 Pfam PF00982 Glycosyltransferase family 20 22 227 1.3E-42 T 29-03-2018 IPR001830 Glycosyl transferase, family 20 GO:0003824|GO:0005992 AM354_RS11495 940f1ac5c36450a413ca72dc8da83070 229 Gene3D G3DSA:3.40.50.2000 9 229 1.8E-52 T 29-03-2018 AM354_RS11495 940f1ac5c36450a413ca72dc8da83070 229 SUPERFAMILY SSF53756 12 225 4.39E-40 T 29-03-2018 AM354_RS12435 672f3f34da05ee66b306c5e4ca5a802a 43 Pfam PF08085 Entericidin EcnA/B family 22 42 9.8E-10 T 29-03-2018 IPR012556 Entericidin A/B GO:0009636|GO:0016020 AM354_RS02525 4763e5e9fc89919f9a7f979dedc5f9b1 173 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 18 32 - T 29-03-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AM354_RS02525 4763e5e9fc89919f9a7f979dedc5f9b1 173 Pfam PF02417 Chromate transporter 7 169 2.4E-32 T 29-03-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 AM354_RS13705 dedba174e3d6a43959da81ae1ea9259a 202 Pfam PF01810 LysE type translocator 12 194 7.8E-13 T 29-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AM354_RS22665 5597d645d1f9dc080bebce8a16c5c140 309 Gene3D G3DSA:3.40.190.10 102 186 4.6E-10 T 29-03-2018 AM354_RS22665 5597d645d1f9dc080bebce8a16c5c140 309 Gene3D G3DSA:1.10.10.10 5 101 1.4E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS22665 5597d645d1f9dc080bebce8a16c5c140 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 20 78 5.0E-19 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS22665 5597d645d1f9dc080bebce8a16c5c140 309 Gene3D G3DSA:3.40.190.10 187 276 9.3E-19 T 29-03-2018 AM354_RS22665 5597d645d1f9dc080bebce8a16c5c140 309 SUPERFAMILY SSF53850 102 306 1.07E-28 T 29-03-2018 AM354_RS22665 5597d645d1f9dc080bebce8a16c5c140 309 Pfam PF03466 LysR substrate binding domain 101 303 2.8E-25 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS22665 5597d645d1f9dc080bebce8a16c5c140 309 SUPERFAMILY SSF46785 17 93 4.46E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS22665 5597d645d1f9dc080bebce8a16c5c140 309 TIGRFAM TIGR02036 dsdC: D-serine deaminase transcriptional activator 14 303 2.4E-116 T 29-03-2018 IPR011781 D-serine deaminase transcriptional activator AM354_RS09440 bd2f29c37709e6ee29dae28402a1e554 371 SUPERFAMILY SSF53807 25 363 8.24E-53 T 29-03-2018 AM354_RS09440 bd2f29c37709e6ee29dae28402a1e554 371 Pfam PF01497 Periplasmic binding protein 74 311 2.1E-26 T 29-03-2018 IPR002491 ABC transporter periplasmic binding domain GO:0005488 AM354_RS09440 bd2f29c37709e6ee29dae28402a1e554 371 Gene3D G3DSA:3.40.50.1980 159 345 9.7E-43 T 29-03-2018 AM354_RS09440 bd2f29c37709e6ee29dae28402a1e554 371 Gene3D G3DSA:3.40.50.1980 17 158 1.4E-21 T 29-03-2018 AM354_RS01910 635653f04b66edc4244f6c899ab40550 376 Pfam PF04371 Porphyromonas-type peptidyl-arginine deiminase 40 372 5.7E-98 T 29-03-2018 IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type GO:0004668|GO:0009446 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 AM354_RS01910 635653f04b66edc4244f6c899ab40550 376 Gene3D G3DSA:3.75.10.10 28 376 8.5E-111 T 29-03-2018 AM354_RS01910 635653f04b66edc4244f6c899ab40550 376 SUPERFAMILY SSF55909 36 373 4.1E-109 T 29-03-2018 AM354_RS01860 e6707e8fc17929a6814231bec5113c3b 641 SUPERFAMILY SSF54001 265 371 1.08E-9 T 29-03-2018 AM354_RS01860 e6707e8fc17929a6814231bec5113c3b 641 Pfam PF01841 Transglutaminase-like superfamily 271 344 1.7E-8 T 29-03-2018 IPR002931 Transglutaminase-like AM354_RS01860 e6707e8fc17929a6814231bec5113c3b 641 Pfam PF12969 Domain of Unknown Function with PDB structure (DUF3857) 58 224 5.9E-34 T 29-03-2018 IPR024618 Domain of unknown function DUF3857 AM354_RS17975 1d09621e5ddf5b0ed1263f8b4b818fdc 98 SMART SM00530 16 71 1.5E-8 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM354_RS17975 1d09621e5ddf5b0ed1263f8b4b818fdc 98 Gene3D G3DSA:1.10.260.40 7 85 2.1E-13 T 29-03-2018 AM354_RS17975 1d09621e5ddf5b0ed1263f8b4b818fdc 98 Pfam PF01381 Helix-turn-helix 21 69 1.1E-11 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM354_RS17975 1d09621e5ddf5b0ed1263f8b4b818fdc 98 SUPERFAMILY SSF47413 9 70 6.17E-13 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS04600 64cbf29eb6114d4ea455950954b3376c 113 Pfam PF10709 Protein of unknown function (DUF2511) 25 111 6.8E-44 T 29-03-2018 IPR019648 Protein of unknown function DUF2511 AM354_RS07475 712ea845e96c84112167cfffc6a5e0ce 318 Pfam PF01497 Periplasmic binding protein 50 287 5.5E-21 T 29-03-2018 IPR002491 ABC transporter periplasmic binding domain GO:0005488 AM354_RS07475 712ea845e96c84112167cfffc6a5e0ce 318 Gene3D G3DSA:3.40.50.1980 15 155 1.8E-25 T 29-03-2018 AM354_RS07475 712ea845e96c84112167cfffc6a5e0ce 318 Gene3D G3DSA:3.40.50.1980 156 318 7.8E-35 T 29-03-2018 AM354_RS07475 712ea845e96c84112167cfffc6a5e0ce 318 SUPERFAMILY SSF53807 39 313 1.61E-45 T 29-03-2018 AM354_RS14530 eb25c152559fc11d3b445c6860299c91 203 Gene3D G3DSA:1.10.10.10 1 81 2.3E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS14530 eb25c152559fc11d3b445c6860299c91 203 SUPERFAMILY SSF46785 6 179 1.19E-26 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS14530 eb25c152559fc11d3b445c6860299c91 203 Pfam PF08279 HTH domain 7 42 3.6E-5 T 29-03-2018 IPR013196 Helix-turn-helix, type 11 AM354_RS22835 73ff2250e6f62ceac8b9cb4305dbe1e3 343 SUPERFAMILY SSF143631 32 341 3.14E-93 T 29-03-2018 IPR003374 ApbE-like domain AM354_RS22835 73ff2250e6f62ceac8b9cb4305dbe1e3 343 PIRSF PIRSF006268 2 343 6.4E-87 T 29-03-2018 IPR024932 Flavin transferase ApbE GO:0017013 AM354_RS22835 73ff2250e6f62ceac8b9cb4305dbe1e3 343 Gene3D G3DSA:3.10.520.10 27 334 8.0E-52 T 29-03-2018 AM354_RS22835 73ff2250e6f62ceac8b9cb4305dbe1e3 343 Pfam PF02424 ApbE family 37 320 8.0E-79 T 29-03-2018 IPR024932 Flavin transferase ApbE GO:0017013 AM354_RS17580 654635eadff6f6c839d5a8d83457fc61 360 Pfam PF13377 Periplasmic binding protein-like domain 171 329 7.2E-33 T 29-03-2018 AM354_RS17580 654635eadff6f6c839d5a8d83457fc61 360 Gene3D G3DSA:3.40.50.2300 56 178 5.6E-23 T 29-03-2018 AM354_RS17580 654635eadff6f6c839d5a8d83457fc61 360 Gene3D G3DSA:3.40.50.2300 179 332 1.5E-41 T 29-03-2018 AM354_RS17580 654635eadff6f6c839d5a8d83457fc61 360 SUPERFAMILY SSF53822 61 326 3.34E-55 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS17580 654635eadff6f6c839d5a8d83457fc61 360 SUPERFAMILY SSF47413 2 61 3.26E-18 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS17580 654635eadff6f6c839d5a8d83457fc61 360 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 15 25 3.3E-5 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS17580 654635eadff6f6c839d5a8d83457fc61 360 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 5 15 3.3E-5 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS17580 654635eadff6f6c839d5a8d83457fc61 360 SMART SM00354 3 73 1.1E-33 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS17580 654635eadff6f6c839d5a8d83457fc61 360 ProSitePatterns PS00356 LacI-type HTH domain signature. 6 24 - T 29-03-2018 AM354_RS17580 654635eadff6f6c839d5a8d83457fc61 360 Pfam PF00356 Bacterial regulatory proteins, lacI family 5 50 6.1E-22 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS17580 654635eadff6f6c839d5a8d83457fc61 360 Gene3D G3DSA:1.10.260.40 4 55 9.0E-21 T 29-03-2018 AM354_RS00515 f5733ae01be987b8415067865b04b5eb 345 Pfam PF02653 Branched-chain amino acid transport system / permease component 62 334 3.0E-52 T 29-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AM354_RS00515 f5733ae01be987b8415067865b04b5eb 345 Gene3D G3DSA:1.10.3470.10 11 340 2.9E-37 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS02915 e221f2901b9898675e7682296519e8a3 209 SMART SM00900 100 192 1.9E-34 T 29-03-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 AM354_RS02915 e221f2901b9898675e7682296519e8a3 209 Hamap MF_00479 Electron transport complex subunit RsxG [rsxG]. 2 194 26.962 T 29-03-2018 IPR010209 Electron transport complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 AM354_RS02915 e221f2901b9898675e7682296519e8a3 209 Pfam PF04205 FMN-binding domain 100 187 4.8E-18 T 29-03-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 AM354_RS02915 e221f2901b9898675e7682296519e8a3 209 TIGRFAM TIGR01947 rnfG: electron transport complex, RnfABCDGE type, G subunit 10 193 1.3E-67 T 29-03-2018 IPR010209 Electron transport complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 AM354_RS02915 e221f2901b9898675e7682296519e8a3 209 PIRSF PIRSF006091 1 202 1.1E-73 T 29-03-2018 IPR010209 Electron transport complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 AM354_RS24390 1a2236246548808c448bcd41628e7ab5 336 SMART SM00846 2 152 1.1E-89 T 29-03-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS24390 1a2236246548808c448bcd41628e7ab5 336 PIRSF PIRSF000149 1 335 5.3E-128 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS24390 1a2236246548808c448bcd41628e7ab5 336 Gene3D G3DSA:3.40.50.720 1 161 1.8E-73 T 29-03-2018 AM354_RS24390 1a2236246548808c448bcd41628e7ab5 336 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 2 101 7.4E-38 T 29-03-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS24390 1a2236246548808c448bcd41628e7ab5 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 109 122 7.8E-34 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS24390 1a2236246548808c448bcd41628e7ab5 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 173 189 7.8E-34 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS24390 1a2236246548808c448bcd41628e7ab5 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 229 246 7.8E-34 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS24390 1a2236246548808c448bcd41628e7ab5 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 270 285 7.8E-34 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS24390 1a2236246548808c448bcd41628e7ab5 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 146 164 7.8E-34 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS24390 1a2236246548808c448bcd41628e7ab5 336 Gene3D G3DSA:3.30.360.10 162 316 8.2E-63 T 29-03-2018 AM354_RS24390 1a2236246548808c448bcd41628e7ab5 336 SUPERFAMILY SSF51735 2 151 2.62E-60 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS24390 1a2236246548808c448bcd41628e7ab5 336 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 3 326 2.5E-124 T 29-03-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS24390 1a2236246548808c448bcd41628e7ab5 336 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 157 314 4.1E-60 T 29-03-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS24390 1a2236246548808c448bcd41628e7ab5 336 SUPERFAMILY SSF55347 152 315 8.04E-66 T 29-03-2018 AM354_RS00455 8535376c5d3e69ab06d4ef7674ec8559 545 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 84 465 9.8E-89 T 29-03-2018 IPR000914 Solute-binding protein family 5 domain AM354_RS00455 8535376c5d3e69ab06d4ef7674ec8559 545 PIRSF PIRSF002741 1 544 5.5E-110 T 29-03-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AM354_RS00455 8535376c5d3e69ab06d4ef7674ec8559 545 Gene3D G3DSA:3.40.190.10 178 313 1.4E-34 T 29-03-2018 AM354_RS00455 8535376c5d3e69ab06d4ef7674ec8559 545 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 89 110 - T 29-03-2018 IPR023765 Solute-binding protein family 5, conserved site AM354_RS00455 8535376c5d3e69ab06d4ef7674ec8559 545 Gene3D G3DSA:3.90.76.10 65 177 1.2E-33 T 29-03-2018 AM354_RS00455 8535376c5d3e69ab06d4ef7674ec8559 545 Gene3D G3DSA:3.10.105.10 314 514 1.1E-56 T 29-03-2018 AM354_RS00455 8535376c5d3e69ab06d4ef7674ec8559 545 SUPERFAMILY SSF53850 37 527 1.63E-145 T 29-03-2018 AM354_RS12040 655ae5c00d3003bf1ca935ebc0d5d024 97 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 9 97 1.0E-43 T 29-03-2018 IPR001890 RNA-binding, CRM domain GO:0003723 AM354_RS12040 655ae5c00d3003bf1ca935ebc0d5d024 97 TIGRFAM TIGR00253 RNA_bind_YhbY: putative RNA-binding protein, YhbY family 3 97 2.6E-41 T 29-03-2018 IPR017924 RNA-binding protein YhbY GO:0003723 AM354_RS12040 655ae5c00d3003bf1ca935ebc0d5d024 97 Gene3D G3DSA:3.30.110.60 2 97 1.9E-29 T 29-03-2018 IPR001890 RNA-binding, CRM domain GO:0003723 AM354_RS12040 655ae5c00d3003bf1ca935ebc0d5d024 97 SMART SM01103 3 86 2.4E-41 T 29-03-2018 IPR001890 RNA-binding, CRM domain GO:0003723 AM354_RS12040 655ae5c00d3003bf1ca935ebc0d5d024 97 SUPERFAMILY SSF75471 1 95 5.89E-32 T 29-03-2018 IPR001890 RNA-binding, CRM domain GO:0003723 AM354_RS12040 655ae5c00d3003bf1ca935ebc0d5d024 97 Pfam PF01985 CRS1 / YhbY (CRM) domain 3 86 6.1E-23 T 29-03-2018 IPR001890 RNA-binding, CRM domain GO:0003723 AM354_RS00590 a71896722c0dfc8d67395b9fe9a414bf 289 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 90 - T 29-03-2018 IPR010916 TonB box, conserved site AM354_RS00590 a71896722c0dfc8d67395b9fe9a414bf 289 Pfam PF01145 SPFH domain / Band 7 family 24 211 3.9E-18 T 29-03-2018 IPR001107 Band 7 domain AM354_RS00590 a71896722c0dfc8d67395b9fe9a414bf 289 SUPERFAMILY SSF117892 72 196 3.66E-7 T 29-03-2018 IPR001107 Band 7 domain AM354_RS17355 b653059529d95c896eac2720f10553f0 356 TIGRFAM TIGR02363 dhaK1: dihydroxyacetone kinase, DhaK subunit 1 352 2.1E-147 T 29-03-2018 IPR012736 Dihydroxyacetone kinase DhaK, subunit 1 AM354_RS17355 b653059529d95c896eac2720f10553f0 356 Gene3D G3DSA:3.30.1180.20 184 356 8.5E-54 T 29-03-2018 AM354_RS17355 b653059529d95c896eac2720f10553f0 356 SUPERFAMILY SSF82549 11 355 2.88E-124 T 29-03-2018 AM354_RS17355 b653059529d95c896eac2720f10553f0 356 Pfam PF02733 Dak1 domain 17 351 1.3E-124 T 29-03-2018 IPR004006 DhaK domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AM354_RS17355 b653059529d95c896eac2720f10553f0 356 Gene3D G3DSA:3.40.50.10440 11 183 8.7E-65 T 29-03-2018 AM354_RS12735 13cf13eff0eeb54fdc40c65368356524 1407 Gene3D G3DSA:2.40.50.100 1009 1040 0.13 T 29-03-2018 AM354_RS12735 13cf13eff0eeb54fdc40c65368356524 1407 SMART SM00663 235 514 1.1E-184 T 29-03-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM354_RS12735 13cf13eff0eeb54fdc40c65368356524 1407 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 10 1377 19.052 T 29-03-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM354_RS12735 13cf13eff0eeb54fdc40c65368356524 1407 Gene3D G3DSA:2.40.50.100 1153 1213 1.4E-12 T 29-03-2018 AM354_RS12735 13cf13eff0eeb54fdc40c65368356524 1407 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 19 1367 0.0 T 29-03-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM354_RS12735 13cf13eff0eeb54fdc40c65368356524 1407 Pfam PF04998 RNA polymerase Rpb1, domain 5 766 1314 1.4E-77 T 29-03-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM354_RS12735 13cf13eff0eeb54fdc40c65368356524 1407 Pfam PF05000 RNA polymerase Rpb1, domain 4 674 763 1.7E-18 T 29-03-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM354_RS12735 13cf13eff0eeb54fdc40c65368356524 1407 Pfam PF04997 RNA polymerase Rpb1, domain 1 15 342 2.3E-89 T 29-03-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM354_RS12735 13cf13eff0eeb54fdc40c65368356524 1407 Gene3D G3DSA:2.40.50.100 1041 1123 2.8E-11 T 29-03-2018 AM354_RS12735 13cf13eff0eeb54fdc40c65368356524 1407 Pfam PF00623 RNA polymerase Rpb1, domain 2 344 393 1.2E-7 T 29-03-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM354_RS12735 13cf13eff0eeb54fdc40c65368356524 1407 Pfam PF00623 RNA polymerase Rpb1, domain 2 392 485 3.9E-27 T 29-03-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM354_RS12735 13cf13eff0eeb54fdc40c65368356524 1407 Gene3D G3DSA:2.40.40.20 346 488 7.3E-40 T 29-03-2018 AM354_RS12735 13cf13eff0eeb54fdc40c65368356524 1407 Pfam PF04983 RNA polymerase Rpb1, domain 3 489 644 1.6E-26 T 29-03-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM354_RS12735 13cf13eff0eeb54fdc40c65368356524 1407 SUPERFAMILY SSF64484 1133 1364 0.0 T 29-03-2018 AM354_RS12735 13cf13eff0eeb54fdc40c65368356524 1407 SUPERFAMILY SSF64484 16 944 0.0 T 29-03-2018 AM354_RS12735 13cf13eff0eeb54fdc40c65368356524 1407 Gene3D G3DSA:2.40.50.100 907 1008 9.5E-27 T 29-03-2018 AM354_RS03810 ecebd7e42f57db814d14bba219afeda8 358 SUPERFAMILY SSF63829 38 327 4.25E-27 T 29-03-2018 AM354_RS03810 ecebd7e42f57db814d14bba219afeda8 358 Gene3D G3DSA:2.120.10.30 30 126 0.0053 T 29-03-2018 IPR011042 Six-bladed beta-propeller, TolB-like AM354_RS03810 ecebd7e42f57db814d14bba219afeda8 358 Gene3D G3DSA:2.120.10.30 127 354 1.3E-17 T 29-03-2018 IPR011042 Six-bladed beta-propeller, TolB-like AM354_RS03810 ecebd7e42f57db814d14bba219afeda8 358 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 52 265 6.9E-9 T 29-03-2018 IPR013658 SMP-30/Gluconolactonase/LRE-like region AM354_RS01630 c0498632c59f581bff09d58b9a6ea8b5 298 SUPERFAMILY SSF53474 15 291 5.51E-68 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS01630 c0498632c59f581bff09d58b9a6ea8b5 298 PRINTS PR00412 Epoxide hydrolase signature 62 77 4.1E-13 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AM354_RS01630 c0498632c59f581bff09d58b9a6ea8b5 298 PRINTS PR00412 Epoxide hydrolase signature 42 60 4.1E-13 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AM354_RS01630 c0498632c59f581bff09d58b9a6ea8b5 298 PRINTS PR00412 Epoxide hydrolase signature 106 119 4.1E-13 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AM354_RS01630 c0498632c59f581bff09d58b9a6ea8b5 298 PRINTS PR00412 Epoxide hydrolase signature 267 289 4.1E-13 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AM354_RS01630 c0498632c59f581bff09d58b9a6ea8b5 298 Gene3D G3DSA:3.40.50.1820 5 298 3.8E-44 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS01630 c0498632c59f581bff09d58b9a6ea8b5 298 Pfam PF00561 alpha/beta hydrolase fold 37 165 1.1E-18 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS01630 c0498632c59f581bff09d58b9a6ea8b5 298 PRINTS PR00111 Alpha/beta hydrolase fold signature 106 119 1.5E-5 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS01630 c0498632c59f581bff09d58b9a6ea8b5 298 PRINTS PR00111 Alpha/beta hydrolase fold signature 120 133 1.5E-5 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS01630 c0498632c59f581bff09d58b9a6ea8b5 298 PRINTS PR00111 Alpha/beta hydrolase fold signature 62 77 1.5E-5 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS06145 fc14850e68afcd48a36b7ec37e371bf3 281 SUPERFAMILY SSF56317 16 281 2.09E-65 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AM354_RS06145 fc14850e68afcd48a36b7ec37e371bf3 281 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 156 176 - T 29-03-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site AM354_RS06145 fc14850e68afcd48a36b7ec37e371bf3 281 Pfam PF00795 Carbon-nitrogen hydrolase 17 259 2.6E-43 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AM354_RS06145 fc14850e68afcd48a36b7ec37e371bf3 281 Gene3D G3DSA:3.60.110.10 7 281 4.6E-67 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AM354_RS07265 bb812fd5d3ee9647c950681dffc9af90 432 Pfam PF00939 Sodium:sulfate symporter transmembrane region 11 431 5.9E-26 T 29-03-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 AM354_RS10600 a146f8b0e969ebab6f1d305d0080f3b0 106 Hamap MF_00910 Cell division protein FtsL [ftsL]. 20 103 16.838 T 29-03-2018 IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 AM354_RS10600 a146f8b0e969ebab6f1d305d0080f3b0 106 Pfam PF04999 Cell division protein FtsL 11 104 2.6E-33 T 29-03-2018 IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 AM354_RS10600 a146f8b0e969ebab6f1d305d0080f3b0 106 TIGRFAM TIGR02209 ftsL_broad: cell division protein FtsL 22 103 2.9E-26 T 29-03-2018 IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 AM354_RS02130 b76657b70151b71ace808d30d9625c71 511 SUPERFAMILY SSF56024 33 228 5.61E-42 T 29-03-2018 AM354_RS02130 b76657b70151b71ace808d30d9625c71 511 SMART SM00155 401 428 5.6E-7 T 29-03-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AM354_RS02130 b76657b70151b71ace808d30d9625c71 511 SMART SM00155 165 192 1.7E-5 T 29-03-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AM354_RS02130 b76657b70151b71ace808d30d9625c71 511 Gene3D G3DSA:3.30.870.10 299 494 1.7E-21 T 29-03-2018 AM354_RS02130 b76657b70151b71ace808d30d9625c71 511 Gene3D G3DSA:3.30.870.10 49 234 5.0E-31 T 29-03-2018 AM354_RS02130 b76657b70151b71ace808d30d9625c71 511 Pfam PF13091 PLD-like domain 80 224 3.0E-18 T 29-03-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AM354_RS02130 b76657b70151b71ace808d30d9625c71 511 Pfam PF13091 PLD-like domain 315 453 1.2E-19 T 29-03-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AM354_RS02130 b76657b70151b71ace808d30d9625c71 511 SUPERFAMILY SSF56024 281 465 1.5E-28 T 29-03-2018 AM354_RS24675 e226215a90041f6bfc93bc03b7b480fc 509 Gene3D G3DSA:1.10.1040.10 189 292 1.0E-26 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM354_RS24675 e226215a90041f6bfc93bc03b7b480fc 509 SUPERFAMILY SSF48179 189 291 7.57E-29 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM354_RS24675 e226215a90041f6bfc93bc03b7b480fc 509 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 421 500 3.6E-12 T 29-03-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM354_RS24675 e226215a90041f6bfc93bc03b7b480fc 509 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 190 287 2.0E-27 T 29-03-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM354_RS24675 e226215a90041f6bfc93bc03b7b480fc 509 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 9 186 8.7E-61 T 29-03-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM354_RS24675 e226215a90041f6bfc93bc03b7b480fc 509 Gene3D G3DSA:3.40.50.2300 313 414 0.057 T 29-03-2018 AM354_RS24675 e226215a90041f6bfc93bc03b7b480fc 509 SUPERFAMILY SSF48179 418 499 1.45E-15 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM354_RS24675 e226215a90041f6bfc93bc03b7b480fc 509 SUPERFAMILY SSF51735 8 189 3.52E-54 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS24675 e226215a90041f6bfc93bc03b7b480fc 509 Gene3D G3DSA:3.40.50.720 1 188 7.6E-54 T 29-03-2018 AM354_RS24675 e226215a90041f6bfc93bc03b7b480fc 509 Gene3D G3DSA:1.10.1040.10 419 503 1.5E-14 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM354_RS24675 e226215a90041f6bfc93bc03b7b480fc 509 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 187 212 - T 29-03-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM354_RS15605 71438891ffaf6ad95f669a20c6f5e73f 777 Pfam PF09371 Tex-like protein N-terminal domain 9 193 6.4E-71 T 29-03-2018 IPR018974 Tex-like protein, N-terminal AM354_RS15605 71438891ffaf6ad95f669a20c6f5e73f 777 Pfam PF00575 S1 RNA binding domain 647 719 2.2E-23 T 29-03-2018 IPR003029 S1 domain GO:0003676 AM354_RS15605 71438891ffaf6ad95f669a20c6f5e73f 777 Gene3D G3DSA:1.10.3500.10 102 357 4.7E-80 T 29-03-2018 IPR023323 Tex-like domain AM354_RS15605 71438891ffaf6ad95f669a20c6f5e73f 777 SUPERFAMILY SSF50249 637 721 3.93E-25 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS15605 71438891ffaf6ad95f669a20c6f5e73f 777 SUPERFAMILY SSF47781 469 557 2.11E-28 T 29-03-2018 IPR010994 RuvA domain 2-like AM354_RS15605 71438891ffaf6ad95f669a20c6f5e73f 777 Gene3D G3DSA:1.10.3500.10 358 497 1.2E-38 T 29-03-2018 IPR023323 Tex-like domain AM354_RS15605 71438891ffaf6ad95f669a20c6f5e73f 777 Pfam PF16921 Tex protein YqgF-like domain 327 450 2.1E-49 T 29-03-2018 IPR032639 Tex protein, YqgF-like domain AM354_RS15605 71438891ffaf6ad95f669a20c6f5e73f 777 Pfam PF12836 Helix-hairpin-helix motif 490 554 2.4E-28 T 29-03-2018 AM354_RS15605 71438891ffaf6ad95f669a20c6f5e73f 777 Gene3D G3DSA:2.40.50.140 642 724 4.3E-26 T 29-03-2018 AM354_RS15605 71438891ffaf6ad95f669a20c6f5e73f 777 Gene3D G3DSA:1.10.10.650 2 101 1.3E-33 T 29-03-2018 IPR023319 Tex-like protein, HTH domain AM354_RS15605 71438891ffaf6ad95f669a20c6f5e73f 777 SUPERFAMILY SSF53098 322 468 2.02E-49 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS15605 71438891ffaf6ad95f669a20c6f5e73f 777 Gene3D G3DSA:1.10.150.310 498 629 3.2E-44 T 29-03-2018 AM354_RS15605 71438891ffaf6ad95f669a20c6f5e73f 777 SUPERFAMILY SSF158832 4 321 1.31E-120 T 29-03-2018 AM354_RS15605 71438891ffaf6ad95f669a20c6f5e73f 777 SMART SM00732 326 423 7.3E-33 T 29-03-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 AM354_RS15605 71438891ffaf6ad95f669a20c6f5e73f 777 SMART SM00316 648 719 2.1E-26 T 29-03-2018 IPR022967 RNA-binding domain, S1 AM354_RS15605 71438891ffaf6ad95f669a20c6f5e73f 777 SUPERFAMILY SSF47781 559 631 3.56E-19 T 29-03-2018 IPR010994 RuvA domain 2-like AM354_RS24430 fb2e43e6b95feacf937f37c6c604fd35 206 Pfam PF00775 Dioxygenase 40 196 8.8E-19 T 29-03-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 AM354_RS24430 fb2e43e6b95feacf937f37c6c604fd35 206 SUPERFAMILY SSF49482 4 206 3.66E-64 T 29-03-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AM354_RS24430 fb2e43e6b95feacf937f37c6c604fd35 206 Gene3D G3DSA:2.60.130.10 2 206 8.5E-55 T 29-03-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AM354_RS24430 fb2e43e6b95feacf937f37c6c604fd35 206 ProSitePatterns PS00083 Intradiol ring-cleavage dioxygenases signature. 51 79 - T 29-03-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 AM354_RS24430 fb2e43e6b95feacf937f37c6c604fd35 206 TIGRFAM TIGR02423 protocat_alph: protocatechuate 3,4-dioxygenase, alpha subunit 8 206 3.6E-79 T 29-03-2018 IPR012786 Protocatechuate 3,4-dioxygenase, alpha subunit GO:0005506|GO:0018578|GO:0019439|GO:0055114 KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3 AM354_RS22995 42ba15b6211e6200de0bddb0db6d7f00 260 SMART SM00062 27 256 6.8E-78 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM354_RS22995 42ba15b6211e6200de0bddb0db6d7f00 260 Gene3D G3DSA:3.40.190.10 16 140 1.4E-36 T 29-03-2018 AM354_RS22995 42ba15b6211e6200de0bddb0db6d7f00 260 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 50 63 - T 29-03-2018 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 AM354_RS22995 42ba15b6211e6200de0bddb0db6d7f00 260 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 7 253 1.7E-93 T 29-03-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0006810|GO:0030288 AM354_RS22995 42ba15b6211e6200de0bddb0db6d7f00 260 Gene3D G3DSA:3.40.190.10 141 259 4.0E-18 T 29-03-2018 AM354_RS22995 42ba15b6211e6200de0bddb0db6d7f00 260 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 28 254 1.0E-62 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM354_RS22995 42ba15b6211e6200de0bddb0db6d7f00 260 SUPERFAMILY SSF53850 8 257 5.68E-67 T 29-03-2018 AM354_RS17195 a67b4375e8cd479711928a997311a15f 168 Pfam PF01863 Protein of unknown function DUF45 93 149 6.0E-11 T 29-03-2018 IPR002725 Protein of unknown function DUF45 AM354_RS12775 d214cfbb6edf1562c195c44abefd242c 394 PRINTS PR00315 GTP-binding elongation factor signature 14 27 2.0E-24 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS12775 d214cfbb6edf1562c195c44abefd242c 394 PRINTS PR00315 GTP-binding elongation factor signature 58 66 2.0E-24 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS12775 d214cfbb6edf1562c195c44abefd242c 394 PRINTS PR00315 GTP-binding elongation factor signature 94 105 2.0E-24 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS12775 d214cfbb6edf1562c195c44abefd242c 394 PRINTS PR00315 GTP-binding elongation factor signature 131 140 2.0E-24 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS12775 d214cfbb6edf1562c195c44abefd242c 394 PRINTS PR00315 GTP-binding elongation factor signature 78 88 2.0E-24 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS12775 d214cfbb6edf1562c195c44abefd242c 394 Gene3D G3DSA:3.40.50.300 75 203 6.1E-32 T 29-03-2018 AM354_RS12775 d214cfbb6edf1562c195c44abefd242c 394 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 9.7E-15 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AM354_RS12775 d214cfbb6edf1562c195c44abefd242c 394 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 394 61.034 T 29-03-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AM354_RS12775 d214cfbb6edf1562c195c44abefd242c 394 SUPERFAMILY SSF50465 298 393 5.18E-36 T 29-03-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal AM354_RS12775 d214cfbb6edf1562c195c44abefd242c 394 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 393 7.0E-238 T 29-03-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AM354_RS12775 d214cfbb6edf1562c195c44abefd242c 394 Gene3D G3DSA:2.40.30.10 300 393 4.9E-33 T 29-03-2018 AM354_RS12775 d214cfbb6edf1562c195c44abefd242c 394 SUPERFAMILY SSF52540 6 219 2.58E-60 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS12775 d214cfbb6edf1562c195c44abefd242c 394 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 29-03-2018 IPR031157 Tr-type G domain, conserved site AM354_RS12775 d214cfbb6edf1562c195c44abefd242c 394 Pfam PF00009 Elongation factor Tu GTP binding domain 10 201 4.6E-59 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM354_RS12775 d214cfbb6edf1562c195c44abefd242c 394 Pfam PF03143 Elongation factor Tu C-terminal domain 298 392 1.3E-33 T 29-03-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal AM354_RS12775 d214cfbb6edf1562c195c44abefd242c 394 SUPERFAMILY SSF50447 205 301 1.71E-30 T 29-03-2018 IPR009000 Translation protein, beta-barrel domain AM354_RS12775 d214cfbb6edf1562c195c44abefd242c 394 Gene3D G3DSA:2.40.30.10 206 299 1.4E-32 T 29-03-2018 AM354_RS12775 d214cfbb6edf1562c195c44abefd242c 394 Gene3D G3DSA:3.40.50.300 2 74 4.9E-11 T 29-03-2018 AM354_RS12775 d214cfbb6edf1562c195c44abefd242c 394 Pfam PF03144 Elongation factor Tu domain 2 225 293 3.9E-17 T 29-03-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AM354_RS18125 488db1f7a2e79db63deeda2b5568e2d6 304 Gene3D G3DSA:3.40.50.1820 37 304 9.7E-32 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS18125 488db1f7a2e79db63deeda2b5568e2d6 304 SUPERFAMILY SSF53474 40 297 1.74E-52 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS18125 488db1f7a2e79db63deeda2b5568e2d6 304 Pfam PF00756 Putative esterase 60 237 1.4E-17 T 29-03-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 AM354_RS10800 b9d16a3067b20266296dc3a9f0f7fa99 185 SUPERFAMILY SSF52218 2 170 1.37E-47 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS10800 b9d16a3067b20266296dc3a9f0f7fa99 185 Gene3D G3DSA:3.40.50.360 1 176 2.0E-39 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS10800 b9d16a3067b20266296dc3a9f0f7fa99 185 Pfam PF02525 Flavodoxin-like fold 2 166 6.7E-40 T 29-03-2018 IPR003680 Flavodoxin-like fold AM354_RS10800 b9d16a3067b20266296dc3a9f0f7fa99 185 Hamap MF_01414 Glutathione-regulated potassium-efflux system ancillary protein KefF [kefF]. 1 179 52.024 T 29-03-2018 IPR023948 Glutathione-regulated potassium-efflux system ancillary protein KefF GO:0006813 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 AM354_RS06055 f8bf3415bc054efaf9766d6eb7757fe0 184 Gene3D G3DSA:2.60.40.1090 33 184 6.2E-31 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS06055 f8bf3415bc054efaf9766d6eb7757fe0 184 Pfam PF00419 Fimbrial protein 37 183 9.2E-16 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS06055 f8bf3415bc054efaf9766d6eb7757fe0 184 SUPERFAMILY SSF49401 34 184 5.97E-34 T 29-03-2018 IPR008966 Adhesion domain AM354_RS16500 27c4c9d7cf7c7f8dad61b2d72715b9ac 474 SUPERFAMILY SSF48024 28 139 6.41E-38 T 29-03-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 AM354_RS16500 27c4c9d7cf7c7f8dad61b2d72715b9ac 474 SMART SM00382 226 432 2.1E-4 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS16500 27c4c9d7cf7c7f8dad61b2d72715b9ac 474 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 29 467 3.8E-174 T 29-03-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 AM354_RS16500 27c4c9d7cf7c7f8dad61b2d72715b9ac 474 Pfam PF03796 DnaB-like helicase C terminal domain 209 465 2.1E-111 T 29-03-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 AM354_RS16500 27c4c9d7cf7c7f8dad61b2d72715b9ac 474 SUPERFAMILY SSF52540 207 278 2.93E-52 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS16500 27c4c9d7cf7c7f8dad61b2d72715b9ac 474 SUPERFAMILY SSF52540 305 459 2.93E-52 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS16500 27c4c9d7cf7c7f8dad61b2d72715b9ac 474 Gene3D G3DSA:1.10.860.10 20 172 3.1E-46 T 29-03-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal AM354_RS16500 27c4c9d7cf7c7f8dad61b2d72715b9ac 474 Pfam PF00772 DnaB-like helicase N terminal domain 30 131 1.6E-35 T 29-03-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 AM354_RS16500 27c4c9d7cf7c7f8dad61b2d72715b9ac 474 Gene3D G3DSA:3.40.50.300 190 474 7.0E-65 T 29-03-2018 AM354_RS16420 adda8398143177d074ae8afc12de5016 301 Pfam PF07148 Maltose operon periplasmic protein precursor (MalM) 71 203 1.8E-53 T 29-03-2018 IPR010794 Maltose operon periplasmic GO:0008643|GO:0042597 AM354_RS10760 44d5d0ba1f469d3c2b3c148c95bf9ade 125 Gene3D G3DSA:2.60.40.1470 4 125 1.6E-43 T 29-03-2018 IPR007474 ApaG domain AM354_RS10760 44d5d0ba1f469d3c2b3c148c95bf9ade 125 Hamap MF_00791 Protein ApaG [apaG]. 1 125 32.406 T 29-03-2018 IPR023065 Uncharacterised protein family ApaG AM354_RS10760 44d5d0ba1f469d3c2b3c148c95bf9ade 125 SUPERFAMILY SSF110069 5 125 1.96E-48 T 29-03-2018 IPR007474 ApaG domain AM354_RS10760 44d5d0ba1f469d3c2b3c148c95bf9ade 125 Pfam PF04379 ApaG domain 18 102 4.9E-34 T 29-03-2018 IPR007474 ApaG domain AM354_RS23515 a918ddb8e0b61d982c619206ece9450a 94 Hamap MF_01336 50S ribosomal protein L25 [rplY]. 2 94 28.467 T 29-03-2018 IPR020055 Ribosomal protein L25, short-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 AM354_RS23515 a918ddb8e0b61d982c619206ece9450a 94 SUPERFAMILY SSF50715 1 94 3.14E-30 T 29-03-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AM354_RS23515 a918ddb8e0b61d982c619206ece9450a 94 Gene3D G3DSA:2.40.240.10 1 94 1.2E-31 T 29-03-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AM354_RS23515 a918ddb8e0b61d982c619206ece9450a 94 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 6 93 7.0E-38 T 29-03-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 AM354_RS23515 a918ddb8e0b61d982c619206ece9450a 94 Pfam PF01386 Ribosomal L25p family 4 91 8.0E-25 T 29-03-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 AM354_RS01280 64104f7d355675685f3a39120093d64d 539 Gene3D G3DSA:3.40.190.10 173 307 1.4E-37 T 29-03-2018 AM354_RS01280 64104f7d355675685f3a39120093d64d 539 SUPERFAMILY SSF53850 31 532 1.5E-144 T 29-03-2018 AM354_RS01280 64104f7d355675685f3a39120093d64d 539 PIRSF PIRSF002741 1 538 6.1E-118 T 29-03-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AM354_RS01280 64104f7d355675685f3a39120093d64d 539 Gene3D G3DSA:3.90.76.10 60 172 8.8E-35 T 29-03-2018 AM354_RS01280 64104f7d355675685f3a39120093d64d 539 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 78 455 2.0E-88 T 29-03-2018 IPR000914 Solute-binding protein family 5 domain AM354_RS01280 64104f7d355675685f3a39120093d64d 539 Gene3D G3DSA:3.10.105.10 308 508 2.1E-61 T 29-03-2018 AM354_RS21885 fc26dfd4f97c4a16df30bd6956264cff 687 Gene3D G3DSA:3.30.870.10 500 686 1.9E-36 T 29-03-2018 AM354_RS21885 fc26dfd4f97c4a16df30bd6956264cff 687 PIRSF PIRSF015589 1 686 1.1E-243 T 29-03-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 AM354_RS21885 fc26dfd4f97c4a16df30bd6956264cff 687 Gene3D G3DSA:1.20.58.310 9 108 2.1E-34 T 29-03-2018 AM354_RS21885 fc26dfd4f97c4a16df30bd6956264cff 687 SUPERFAMILY SSF56024 315 497 1.95E-57 T 29-03-2018 AM354_RS21885 fc26dfd4f97c4a16df30bd6956264cff 687 Gene3D G3DSA:3.30.870.10 325 499 2.2E-24 T 29-03-2018 AM354_RS21885 fc26dfd4f97c4a16df30bd6956264cff 687 SUPERFAMILY SSF56024 500 681 4.26E-69 T 29-03-2018 AM354_RS21885 fc26dfd4f97c4a16df30bd6956264cff 687 Hamap MF_00347 Polyphosphate kinase [ppk]. 5 681 27.235 T 29-03-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 AM354_RS21885 fc26dfd4f97c4a16df30bd6956264cff 687 SUPERFAMILY SSF143724 107 313 2.55E-59 T 29-03-2018 AM354_RS21885 fc26dfd4f97c4a16df30bd6956264cff 687 Gene3D G3DSA:3.30.1840.10 109 307 1.1E-51 T 29-03-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 AM354_RS21885 fc26dfd4f97c4a16df30bd6956264cff 687 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 7 677 1.7E-259 T 29-03-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 AM354_RS21885 fc26dfd4f97c4a16df30bd6956264cff 687 Pfam PF02503 Polyphosphate kinase middle domain 119 319 4.4E-42 T 29-03-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 AM354_RS21885 fc26dfd4f97c4a16df30bd6956264cff 687 SUPERFAMILY SSF140356 3 105 9.55E-34 T 29-03-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 AM354_RS21885 fc26dfd4f97c4a16df30bd6956264cff 687 Pfam PF13089 Polyphosphate kinase N-terminal domain 7 109 2.7E-31 T 29-03-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 AM354_RS21885 fc26dfd4f97c4a16df30bd6956264cff 687 Pfam PF13090 Polyphosphate kinase C-terminal domain 331 676 3.1E-146 T 29-03-2018 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 AM354_RS08420 850953db15a35c20b648c28e169d7a91 396 Gene3D G3DSA:1.20.1250.20 1 198 5.7E-30 T 29-03-2018 AM354_RS08420 850953db15a35c20b648c28e169d7a91 396 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 9 389 1.1E-89 T 29-03-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 AM354_RS08420 850953db15a35c20b648c28e169d7a91 396 SUPERFAMILY SSF103473 5 393 1.96E-65 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS08420 850953db15a35c20b648c28e169d7a91 396 Gene3D G3DSA:1.20.1250.20 201 396 3.6E-21 T 29-03-2018 AM354_RS08420 850953db15a35c20b648c28e169d7a91 396 PRINTS PR01035 Tetracycline resistance protein signature 22 38 1.4E-6 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AM354_RS08420 850953db15a35c20b648c28e169d7a91 396 PRINTS PR01035 Tetracycline resistance protein signature 279 300 1.4E-6 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AM354_RS08420 850953db15a35c20b648c28e169d7a91 396 PRINTS PR01035 Tetracycline resistance protein signature 106 127 1.4E-6 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AM354_RS08420 850953db15a35c20b648c28e169d7a91 396 Pfam PF07690 Major Facilitator Superfamily 18 359 5.2E-45 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS11710 130ae747037f46bceefd7d7f70ee4041 254 Pfam PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) 6 248 1.9E-107 T 29-03-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 AM354_RS11710 130ae747037f46bceefd7d7f70ee4041 254 SUPERFAMILY SSF47240 105 251 4.24E-74 T 29-03-2018 IPR009078 Ferritin-like superfamily AM354_RS11710 130ae747037f46bceefd7d7f70ee4041 254 SUPERFAMILY SSF47240 7 57 4.24E-74 T 29-03-2018 IPR009078 Ferritin-like superfamily AM354_RS11710 130ae747037f46bceefd7d7f70ee4041 254 PIRSF PIRSF020736 1 253 2.8E-91 T 29-03-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 AM354_RS11710 130ae747037f46bceefd7d7f70ee4041 254 Gene3D G3DSA:1.20.1260.10 3 254 3.6E-73 T 29-03-2018 IPR012347 Ferritin-related AM354_RS21005 fd78687b6ca249f1f4e46f9ab04c1df2 217 SUPERFAMILY SSF89069 1 66 8.11E-21 T 29-03-2018 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 AM354_RS21005 fd78687b6ca249f1f4e46f9ab04c1df2 217 PIRSF PIRSF016938 1 205 3.3E-34 T 29-03-2018 IPR026279 Sigma-E factor negative regulatory protein RseA GO:0006950|GO:0016989 AM354_RS21005 fd78687b6ca249f1f4e46f9ab04c1df2 217 Pfam PF03872 Anti sigma-E protein RseA, N-terminal domain 1 87 5.6E-37 T 29-03-2018 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 AM354_RS21005 fd78687b6ca249f1f4e46f9ab04c1df2 217 Pfam PF03873 Anti sigma-E protein RseA, C-terminal domain 132 187 6.3E-24 T 29-03-2018 IPR005573 Anti sigma-E protein RseA, C-terminal AM354_RS14875 441eb6486f346dfd6aa8c3db33474110 283 Pfam PF00072 Response regulator receiver domain 162 249 1.4E-4 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS14875 441eb6486f346dfd6aa8c3db33474110 283 Pfam PF08667 BetR domain 12 152 8.7E-33 T 29-03-2018 IPR013975 Transcription regulator BetR, N-terminal AM354_RS14875 441eb6486f346dfd6aa8c3db33474110 283 Gene3D G3DSA:3.40.50.2300 154 283 2.3E-13 T 29-03-2018 AM354_RS14875 441eb6486f346dfd6aa8c3db33474110 283 SUPERFAMILY SSF52172 159 282 2.13E-12 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS14875 441eb6486f346dfd6aa8c3db33474110 283 Gene3D G3DSA:1.10.260.40 2 82 7.3E-5 T 29-03-2018 AM354_RS17090 2d6bf75f682276429f25b43c28353325 287 PIRSF PIRSF005917 1 287 1.8E-107 T 29-03-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AM354_RS17090 2d6bf75f682276429f25b43c28353325 287 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 13 213 1.4E-26 T 29-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM354_RS17090 2d6bf75f682276429f25b43c28353325 287 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 91 102 - T 29-03-2018 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AM354_RS17090 2d6bf75f682276429f25b43c28353325 287 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 14 283 2.7E-110 T 29-03-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AM354_RS17090 2d6bf75f682276429f25b43c28353325 287 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 13 234 37.886 T 29-03-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AM354_RS17090 2d6bf75f682276429f25b43c28353325 287 SUPERFAMILY SSF53790 13 232 2.36E-82 T 29-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM354_RS17090 2d6bf75f682276429f25b43c28353325 287 Gene3D G3DSA:3.40.1010.10 11 121 3.2E-43 T 29-03-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM354_RS17090 2d6bf75f682276429f25b43c28353325 287 Gene3D G3DSA:3.30.950.10 122 237 8.8E-40 T 29-03-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM354_RS10550 da024c41010916b81d879acae268f6dd 283 Pfam PF03799 Cell division protein FtsQ 129 246 1.1E-25 T 29-03-2018 IPR005548 Cell division protein FtsQ/DivIB AM354_RS10550 da024c41010916b81d879acae268f6dd 283 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 25 254 25.471 T 29-03-2018 IPR026579 Cell division protein FtsQ GO:0090529 AM354_RS10550 da024c41010916b81d879acae268f6dd 283 Pfam PF08478 POTRA domain, FtsQ-type 56 125 5.4E-22 T 29-03-2018 IPR013685 POTRA domain, FtsQ-type AM354_RS16355 2dd62ebbf75738b5a4bc7098b2f7ab79 559 Pfam PF17287 POTRA domain 156 206 2.7E-14 T 29-03-2018 IPR035251 ShlB, POTRA domain AM354_RS16355 2dd62ebbf75738b5a4bc7098b2f7ab79 559 PIRSF PIRSF029745 1 559 1.3E-125 T 29-03-2018 IPR027282 Two partner secretion pathway transporter GO:0015031 AM354_RS16355 2dd62ebbf75738b5a4bc7098b2f7ab79 559 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 211 521 1.3E-95 T 29-03-2018 IPR005565 Haemolysin activator HlyB, C-terminal AM354_RS16355 2dd62ebbf75738b5a4bc7098b2f7ab79 559 Gene3D G3DSA:2.40.160.50 180 559 2.1E-35 T 29-03-2018 AM354_RS16355 2dd62ebbf75738b5a4bc7098b2f7ab79 559 Pfam PF08479 POTRA domain, ShlB-type 81 154 1.6E-19 T 29-03-2018 IPR013686 Polypeptide-transport-associated, ShlB-type AM354_RS16355 2dd62ebbf75738b5a4bc7098b2f7ab79 559 Gene3D G3DSA:3.10.20.310 85 154 2.7E-9 T 29-03-2018 AM354_RS14990 e6d26f9d8ffc141702c8c2f0a4690b24 982 Gene3D G3DSA:3.30.420.40 245 558 5.2E-5 T 29-03-2018 AM354_RS14990 e6d26f9d8ffc141702c8c2f0a4690b24 982 Pfam PF07520 Virulence factor SrfB 2 979 0.0 T 29-03-2018 IPR009216 Virulence factor SrfB AM354_RS14990 e6d26f9d8ffc141702c8c2f0a4690b24 982 PIRSF PIRSF034585 2 982 0.0 T 29-03-2018 IPR009216 Virulence factor SrfB AM354_RS14990 e6d26f9d8ffc141702c8c2f0a4690b24 982 Gene3D G3DSA:3.30.420.40 559 776 2.0E-5 T 29-03-2018 AM354_RS08410 5c479fb02f3113c05cfdafbaff1cbfd3 127 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 5 122 19.604 T 29-03-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 AM354_RS08410 5c479fb02f3113c05cfdafbaff1cbfd3 127 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 6 116 2.0E-24 T 29-03-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 AM354_RS08410 5c479fb02f3113c05cfdafbaff1cbfd3 127 TIGRFAM TIGR00494 crcB: protein CrcB 6 120 4.7E-40 T 29-03-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 AM354_RS15110 23ac03307a22b37efe340c471ccd69d6 525 Pfam PF06074 Protein of unknown function (DUF935) 17 522 2.7E-167 T 29-03-2018 IPR009279 Protein of unknown function DUF935 AM354_RS06115 b1ef1ef540caa5eea8898b0314c6e444 340 Gene3D G3DSA:2.60.120.330 2 308 3.7E-83 T 29-03-2018 IPR027443 Isopenicillin N synthase-like AM354_RS06115 b1ef1ef540caa5eea8898b0314c6e444 340 PRINTS PR00682 Isopenicillin N synthase signature 32 49 2.6E-12 T 29-03-2018 AM354_RS06115 b1ef1ef540caa5eea8898b0314c6e444 340 PRINTS PR00682 Isopenicillin N synthase signature 239 265 2.6E-12 T 29-03-2018 AM354_RS06115 b1ef1ef540caa5eea8898b0314c6e444 340 PRINTS PR00682 Isopenicillin N synthase signature 203 224 2.6E-12 T 29-03-2018 AM354_RS06115 b1ef1ef540caa5eea8898b0314c6e444 340 SUPERFAMILY SSF51197 6 287 6.73E-79 T 29-03-2018 AM354_RS06115 b1ef1ef540caa5eea8898b0314c6e444 340 Pfam PF14226 non-haem dioxygenase in morphine synthesis N-terminal 10 133 7.4E-35 T 29-03-2018 IPR026992 Non-haem dioxygenase N-terminal domain AM354_RS06115 b1ef1ef540caa5eea8898b0314c6e444 340 Pfam PF03171 2OG-Fe(II) oxygenase superfamily 182 278 1.9E-18 T 29-03-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 AM354_RS16345 8a0cfd418945c2f0ce64ee0ba1cd131f 549 Pfam PF01895 PhoU domain 340 422 1.9E-7 T 29-03-2018 IPR026022 PhoU domain AM354_RS16345 8a0cfd418945c2f0ce64ee0ba1cd131f 549 SUPERFAMILY SSF109755 320 531 1.78E-26 T 29-03-2018 AM354_RS16345 8a0cfd418945c2f0ce64ee0ba1cd131f 549 Gene3D G3DSA:1.20.58.220 322 430 6.0E-11 T 29-03-2018 AM354_RS16345 8a0cfd418945c2f0ce64ee0ba1cd131f 549 Gene3D G3DSA:1.20.58.220 431 547 4.1E-6 T 29-03-2018 AM354_RS16345 8a0cfd418945c2f0ce64ee0ba1cd131f 549 TIGRFAM TIGR00704 NaPi_cotrn_rel: Na/Pi-cotransporter II-related protein 1 306 1.8E-110 T 29-03-2018 IPR004633 Na/Pi-cotransporter II-related/YqeW-like protein GO:0016020 AM354_RS16345 8a0cfd418945c2f0ce64ee0ba1cd131f 549 TIGRFAM TIGR01013 2a58: sodium-dependent inorganic phosphate (Pi) transporter 67 520 2.5E-122 T 29-03-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 AM354_RS16345 8a0cfd418945c2f0ce64ee0ba1cd131f 549 Pfam PF02690 Na+/Pi-cotransporter 159 250 2.7E-8 T 29-03-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 AM354_RS16345 8a0cfd418945c2f0ce64ee0ba1cd131f 549 Pfam PF02690 Na+/Pi-cotransporter 13 147 6.1E-35 T 29-03-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 AM354_RS13970 a1457bf24a9d05c433a9d4459d901fe3 346 SUPERFAMILY SSF53850 29 335 8.8E-96 T 29-03-2018 AM354_RS13970 a1457bf24a9d05c433a9d4459d901fe3 346 Pfam PF12849 PBP superfamily domain 22 307 5.0E-61 T 29-03-2018 IPR024370 PBP domain AM354_RS13970 a1457bf24a9d05c433a9d4459d901fe3 346 Gene3D G3DSA:3.40.190.10 161 337 8.1E-25 T 29-03-2018 AM354_RS13970 a1457bf24a9d05c433a9d4459d901fe3 346 Gene3D G3DSA:3.40.190.10 26 160 1.4E-32 T 29-03-2018 AM354_RS13970 a1457bf24a9d05c433a9d4459d901fe3 346 TIGRFAM TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS 29 335 5.0E-129 T 29-03-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 AM354_RS13970 a1457bf24a9d05c433a9d4459d901fe3 346 PIRSF PIRSF002756 2 338 1.4E-105 T 29-03-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 AM354_RS03310 5b17773753e27618e4ef80b7070def1d 243 SUPERFAMILY SSF141868 13 223 8.76E-24 T 29-03-2018 IPR001633 EAL domain AM354_RS03310 5b17773753e27618e4ef80b7070def1d 243 SMART SM00052 1 229 7.0E-7 T 29-03-2018 IPR001633 EAL domain AM354_RS03310 5b17773753e27618e4ef80b7070def1d 243 Pfam PF00563 EAL domain 13 223 7.3E-23 T 29-03-2018 IPR001633 EAL domain AM354_RS03310 5b17773753e27618e4ef80b7070def1d 243 Gene3D G3DSA:3.20.20.450 6 236 7.6E-25 T 29-03-2018 IPR001633 EAL domain AM354_RS14910 b91020f26f981a8f242a3eaf382d9122 248 Hamap MF_01523 Ribosomal RNA small subunit methyltransferase J [rsmJ]. 3 248 38.277 T 29-03-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 AM354_RS14910 b91020f26f981a8f242a3eaf382d9122 248 Gene3D G3DSA:3.40.50.150 57 247 6.1E-33 T 29-03-2018 AM354_RS14910 b91020f26f981a8f242a3eaf382d9122 248 SUPERFAMILY SSF53335 4 246 4.97E-77 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS14910 b91020f26f981a8f242a3eaf382d9122 248 Pfam PF04445 Putative SAM-dependent methyltransferase 19 246 9.2E-109 T 29-03-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 AM354_RS14910 b91020f26f981a8f242a3eaf382d9122 248 Gene3D G3DSA:3.40.1630.10 3 56 1.0E-22 T 29-03-2018 AM354_RS03600 c3f703cad89421112095a841c8ee26b3 152 Pfam PF05229 Spore Coat Protein U domain 8 149 2.4E-36 T 29-03-2018 IPR007893 Spore coat protein U AM354_RS03600 c3f703cad89421112095a841c8ee26b3 152 SMART SM00972 94 149 1.0E-21 T 29-03-2018 IPR007893 Spore coat protein U AM354_RS14610 6d6e29926e47f2ae8a55a28c516dfc7c 811 Pfam PF00742 Homoserine dehydrogenase 609 804 5.1E-43 T 29-03-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 AM354_RS14610 6d6e29926e47f2ae8a55a28c516dfc7c 811 Pfam PF00696 Amino acid kinase family 13 285 5.4E-43 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase AM354_RS14610 6d6e29926e47f2ae8a55a28c516dfc7c 811 Gene3D G3DSA:3.40.1160.10 10 281 6.6E-48 T 29-03-2018 AM354_RS14610 6d6e29926e47f2ae8a55a28c516dfc7c 811 PIRSF PIRSF000727 13 811 1.1E-288 T 29-03-2018 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I GO:0004072|GO:0004412|GO:0009067|GO:0055114 KEGG: 00260+2.7.2.4+1.1.1.3|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4+1.1.1.3|KEGG: 00300+2.7.2.4+1.1.1.3|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 AM354_RS14610 6d6e29926e47f2ae8a55a28c516dfc7c 811 SUPERFAMILY SSF53633 13 300 7.85E-58 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase AM354_RS14610 6d6e29926e47f2ae8a55a28c516dfc7c 811 SUPERFAMILY SSF55347 609 792 4.32E-46 T 29-03-2018 AM354_RS14610 6d6e29926e47f2ae8a55a28c516dfc7c 811 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 16 454 1.3E-63 T 29-03-2018 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 AM354_RS14610 6d6e29926e47f2ae8a55a28c516dfc7c 811 SUPERFAMILY SSF51735 458 631 1.07E-31 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS14610 6d6e29926e47f2ae8a55a28c516dfc7c 811 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 655 677 - T 29-03-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 AM354_RS14610 6d6e29926e47f2ae8a55a28c516dfc7c 811 ProSitePatterns PS00324 Aspartokinase signature. 15 23 - T 29-03-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 AM354_RS14610 6d6e29926e47f2ae8a55a28c516dfc7c 811 Gene3D G3DSA:3.40.50.720 456 630 8.9E-23 T 29-03-2018 AM354_RS14610 6d6e29926e47f2ae8a55a28c516dfc7c 811 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 466 601 2.7E-21 T 29-03-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 AM354_RS14610 6d6e29926e47f2ae8a55a28c516dfc7c 811 Gene3D G3DSA:3.30.360.10 631 788 1.6E-50 T 29-03-2018 AM354_RS13510 fa9a75e2a9bad632327ad37ee25a751f 196 Pfam PF00196 Bacterial regulatory proteins, luxR family 138 191 2.1E-19 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS13510 fa9a75e2a9bad632327ad37ee25a751f 196 SMART SM00421 136 193 2.0E-22 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS13510 fa9a75e2a9bad632327ad37ee25a751f 196 SUPERFAMILY SSF52172 2 129 3.98E-25 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS13510 fa9a75e2a9bad632327ad37ee25a751f 196 Gene3D G3DSA:3.40.50.2300 2 124 4.7E-28 T 29-03-2018 AM354_RS13510 fa9a75e2a9bad632327ad37ee25a751f 196 Gene3D G3DSA:1.10.10.10 125 196 2.0E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS13510 fa9a75e2a9bad632327ad37ee25a751f 196 Pfam PF00072 Response regulator receiver domain 6 114 6.5E-23 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS13510 fa9a75e2a9bad632327ad37ee25a751f 196 SUPERFAMILY SSF46894 123 195 4.42E-20 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS13510 fa9a75e2a9bad632327ad37ee25a751f 196 SMART SM00448 3 113 5.9E-22 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS13510 fa9a75e2a9bad632327ad37ee25a751f 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 139 153 1.8E-12 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS13510 fa9a75e2a9bad632327ad37ee25a751f 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 153 169 1.8E-12 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS13510 fa9a75e2a9bad632327ad37ee25a751f 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 169 181 1.8E-12 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS13510 fa9a75e2a9bad632327ad37ee25a751f 196 ProSitePatterns PS00622 LuxR-type HTH domain signature. 153 180 - T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS19045 55041c7774e3982587bd9838e3dc1265 125 Pfam PF02656 Domain of unknown function (DUF202) 22 88 2.4E-15 T 29-03-2018 IPR003807 Domain of unknown function DUF202 AM354_RS22670 96c9c73ea2a375e3b8123263a0926d0c 83 Gene3D G3DSA:1.10.1470.10 1 59 7.1E-15 T 29-03-2018 IPR008462 CsbD-like domain AM354_RS22670 96c9c73ea2a375e3b8123263a0926d0c 83 Pfam PF05532 CsbD-like 4 50 8.9E-15 T 29-03-2018 IPR008462 CsbD-like domain AM354_RS22670 96c9c73ea2a375e3b8123263a0926d0c 83 SUPERFAMILY SSF69047 1 51 2.22E-12 T 29-03-2018 IPR008462 CsbD-like domain AM354_RS14345 e11fc31b7017f9f9219efdd9a4ca7948 257 Gene3D G3DSA:3.90.550.10 2 229 6.3E-25 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS14345 e11fc31b7017f9f9219efdd9a4ca7948 257 SUPERFAMILY SSF53448 3 161 6.75E-29 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS14345 e11fc31b7017f9f9219efdd9a4ca7948 257 Pfam PF00535 Glycosyl transferase family 2 8 138 2.1E-19 T 29-03-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AM354_RS14305 e2bbe2f0e57cb951bb546ecdde1a099f 198 SUPERFAMILY SSF48498 86 193 1.42E-6 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AM354_RS14305 e2bbe2f0e57cb951bb546ecdde1a099f 198 Gene3D G3DSA:1.10.10.60 3 58 1.0E-12 T 29-03-2018 AM354_RS14305 e2bbe2f0e57cb951bb546ecdde1a099f 198 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 58 - T 29-03-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AM354_RS14305 e2bbe2f0e57cb951bb546ecdde1a099f 198 SUPERFAMILY SSF46689 7 75 1.05E-11 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS14305 e2bbe2f0e57cb951bb546ecdde1a099f 198 Hamap MF_01839 Nucleoid occlusion factor SlmA [slmA]. 1 198 41.411 T 29-03-2018 IPR023769 Nucleoid occlusion factor SlmA GO:0010974 AM354_RS14305 e2bbe2f0e57cb951bb546ecdde1a099f 198 Gene3D G3DSA:1.10.357.10 59 192 7.3E-16 T 29-03-2018 AM354_RS14305 e2bbe2f0e57cb951bb546ecdde1a099f 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 26 61 2.1E-8 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS13885 fbf6061dbe94316f612964b7f1aea3ab 85 SMART SM01234 8 75 5.2E-44 T 29-03-2018 IPR002696 Putative membrane protein insertion efficiency factor AM354_RS13885 fbf6061dbe94316f612964b7f1aea3ab 85 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 12 83 5.3E-32 T 29-03-2018 IPR002696 Putative membrane protein insertion efficiency factor AM354_RS13885 fbf6061dbe94316f612964b7f1aea3ab 85 Pfam PF01809 Haemolytic domain 10 75 2.3E-29 T 29-03-2018 IPR002696 Putative membrane protein insertion efficiency factor AM354_RS13885 fbf6061dbe94316f612964b7f1aea3ab 85 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 22 75 3.0E-23 T 29-03-2018 IPR002696 Putative membrane protein insertion efficiency factor AM354_RS13885 fbf6061dbe94316f612964b7f1aea3ab 85 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 8 76 24.764 T 29-03-2018 IPR002696 Putative membrane protein insertion efficiency factor AM354_RS09535 144a3d0e0db0096c47b60f4864b8c420 87 Pfam PF03891 Domain of unknown function (DUF333) 36 82 3.5E-19 T 29-03-2018 IPR005590 Protein of unknown function DUF333 AM354_RS24460 3702a37785f7da5050c46dbd40d1a9c8 229 Pfam PF01144 Coenzyme A transferase 7 218 4.6E-66 T 29-03-2018 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 Reactome: R-HSA-77108 AM354_RS24460 3702a37785f7da5050c46dbd40d1a9c8 229 SUPERFAMILY SSF100950 2 223 8.37E-78 T 29-03-2018 AM354_RS24460 3702a37785f7da5050c46dbd40d1a9c8 229 Gene3D G3DSA:3.40.1080.10 2 228 3.6E-80 T 29-03-2018 AM354_RS24460 3702a37785f7da5050c46dbd40d1a9c8 229 SMART SM00882 6 219 1.5E-80 T 29-03-2018 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 Reactome: R-HSA-77108 AM354_RS24460 3702a37785f7da5050c46dbd40d1a9c8 229 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 18 33 - T 29-03-2018 IPR004163 Coenzyme A transferase binding site GO:0008152|GO:0008410 Reactome: R-HSA-77108 AM354_RS24460 3702a37785f7da5050c46dbd40d1a9c8 229 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 1 220 2.3E-114 T 29-03-2018 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 Reactome: R-HSA-77108 AM354_RS00715 ee6d89bb7f8752e5a31df8a78e4cb550 167 ProDom PD097046 DNA STABILIZATION GP4 PACKAGED LATE HEAD GENE SEQUENCING DIRECT COMPLETION 5 154 6.0E-50 T 29-03-2018 IPR020362 Tail accessory factor GP4 AM354_RS00715 ee6d89bb7f8752e5a31df8a78e4cb550 167 Pfam PF11650 P22 tail accessory factor 1 160 2.9E-66 T 29-03-2018 IPR020362 Tail accessory factor GP4 AM354_RS19435 c565150048f3effca50448a26b529237 109 Pfam PF05164 Cell division protein ZapA 6 90 3.4E-19 T 29-03-2018 IPR007838 Cell division protein ZapA-like AM354_RS19435 c565150048f3effca50448a26b529237 109 Hamap MF_02012 Cell division protein ZapA [zapA]. 1 109 33.802 T 29-03-2018 IPR023771 Cell division protein ZapA, eubacteria AM354_RS19435 c565150048f3effca50448a26b529237 109 SUPERFAMILY SSF102829 6 94 9.68E-25 T 29-03-2018 IPR007838 Cell division protein ZapA-like AM354_RS09755 95203a67b9a5b91cd13dc68c0ed3a31c 88 SUPERFAMILY SSF53098 3 79 2.47E-15 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS09755 95203a67b9a5b91cd13dc68c0ed3a31c 88 Pfam PF13333 Integrase core domain 30 84 5.0E-21 T 29-03-2018 IPR001584 Integrase, catalytic core GO:0015074 AM354_RS09755 95203a67b9a5b91cd13dc68c0ed3a31c 88 Gene3D G3DSA:3.30.420.10 1 88 1.7E-17 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS25515 519fc51d9800198300d66223000f75e5 266 SMART SM00079 42 262 6.2E-5 T 29-03-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 AM354_RS25515 519fc51d9800198300d66223000f75e5 266 SUPERFAMILY SSF53850 17 264 6.34E-78 T 29-03-2018 AM354_RS25515 519fc51d9800198300d66223000f75e5 266 SMART SM00062 42 263 7.9E-88 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM354_RS25515 519fc51d9800198300d66223000f75e5 266 Gene3D G3DSA:3.40.190.10 158 265 7.0E-17 T 29-03-2018 AM354_RS25515 519fc51d9800198300d66223000f75e5 266 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 65 78 - T 29-03-2018 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 AM354_RS25515 519fc51d9800198300d66223000f75e5 266 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 43 261 3.1E-73 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM354_RS25515 519fc51d9800198300d66223000f75e5 266 Gene3D G3DSA:3.40.190.10 13 157 1.4E-47 T 29-03-2018 AM354_RS07220 86fb5362409d4c7c022ff37432fedb09 290 Pfam PF09995 Uncharacterized protein conserved in bacteria (DUF2236) 42 262 4.7E-52 T 29-03-2018 IPR018713 Domain of unknown function DUF2236 AM354_RS02740 398cbc713622d8fb445a8582f0107260 130 Gene3D G3DSA:1.10.1660.10 1 60 9.0E-15 T 29-03-2018 AM354_RS02740 398cbc713622d8fb445a8582f0107260 130 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 6 17 2.6E-6 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS02740 398cbc713622d8fb445a8582f0107260 130 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 40 60 2.6E-6 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS02740 398cbc713622d8fb445a8582f0107260 130 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 17 30 2.6E-6 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS02740 398cbc713622d8fb445a8582f0107260 130 Pfam PF13411 MerR HTH family regulatory protein 7 72 1.2E-10 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS02740 398cbc713622d8fb445a8582f0107260 130 SMART SM00422 5 73 7.0E-12 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS02740 398cbc713622d8fb445a8582f0107260 130 SUPERFAMILY SSF46955 6 123 7.69E-23 T 29-03-2018 IPR009061 Putative DNA-binding domain AM354_RS02740 398cbc713622d8fb445a8582f0107260 130 ProSitePatterns PS00552 MerR-type HTH domain signature. 8 30 - T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS02740 398cbc713622d8fb445a8582f0107260 130 Gene3D G3DSA:1.10.1660.10 61 129 1.5E-10 T 29-03-2018 AM354_RS02725 cb78d82fbeb0386fdb66bc7b79f7f6c0 216 SUPERFAMILY SSF161098 13 204 1.57E-38 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS02725 cb78d82fbeb0386fdb66bc7b79f7f6c0 216 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 36 205 7.2E-20 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS02725 cb78d82fbeb0386fdb66bc7b79f7f6c0 216 Gene3D G3DSA:1.10.3720.10 3 214 7.3E-30 T 29-03-2018 AM354_RS06240 ced9ff829b052bba9ac71232ea52cc3a 405 SMART SM00382 50 221 3.0E-11 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS06240 ced9ff829b052bba9ac71232ea52cc3a 405 Gene3D G3DSA:2.70.50.60 261 395 4.5E-33 T 29-03-2018 AM354_RS06240 ced9ff829b052bba9ac71232ea52cc3a 405 Gene3D G3DSA:3.40.50.300 1 260 1.7E-47 T 29-03-2018 AM354_RS06240 ced9ff829b052bba9ac71232ea52cc3a 405 Pfam PF14524 Wzt C-terminal domain 259 397 9.8E-35 T 29-03-2018 IPR029439 Wzt, C-terminal AM354_RS06240 ced9ff829b052bba9ac71232ea52cc3a 405 SUPERFAMILY SSF52540 35 237 1.3E-46 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS06240 ced9ff829b052bba9ac71232ea52cc3a 405 Pfam PF00005 ABC transporter 41 173 2.8E-19 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS06240 ced9ff829b052bba9ac71232ea52cc3a 405 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS03490 16534d8b9a9fbd00e44da10f0964e735 186 ProDom PD035714 MEMBRANE REGULATOR YNIB TRANSMEMBRANE YFEABCD YFEE PROBABLE LOCUS ESCHERICHIA ECS2432 1 180 1.0E-77 T 29-03-2018 AM354_RS03490 16534d8b9a9fbd00e44da10f0964e735 186 Pfam PF14002 YniB-like protein 15 180 1.6E-81 T 29-03-2018 IPR025229 YniB-like protein AM354_RS13920 033819e0e2d572109e7625d9a9379634 445 Pfam PF00860 Permease family 31 404 9.7E-41 T 29-03-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 AM354_RS13920 033819e0e2d572109e7625d9a9379634 445 PIRSF PIRSF005353 7 444 1.5E-173 T 29-03-2018 IPR026033 Purine permease PbuG-like AM354_RS19830 4066416b9b65ca6e3dab9229085c0cc2 231 Gene3D G3DSA:3.40.50.2300 20 147 1.2E-11 T 29-03-2018 AM354_RS19830 4066416b9b65ca6e3dab9229085c0cc2 231 Gene3D G3DSA:1.10.10.10 148 224 5.0E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS19830 4066416b9b65ca6e3dab9229085c0cc2 231 Pfam PF00196 Bacterial regulatory proteins, luxR family 164 216 1.3E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS19830 4066416b9b65ca6e3dab9229085c0cc2 231 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 195 2.1E-5 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS19830 4066416b9b65ca6e3dab9229085c0cc2 231 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 195 207 2.1E-5 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS19830 4066416b9b65ca6e3dab9229085c0cc2 231 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 179 2.1E-5 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS19830 4066416b9b65ca6e3dab9229085c0cc2 231 Pfam PF00072 Response regulator receiver domain 38 135 1.8E-7 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS19830 4066416b9b65ca6e3dab9229085c0cc2 231 SUPERFAMILY SSF52172 37 158 2.13E-10 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS19830 4066416b9b65ca6e3dab9229085c0cc2 231 ProSitePatterns PS00622 LuxR-type HTH domain signature. 179 206 - T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS19830 4066416b9b65ca6e3dab9229085c0cc2 231 SUPERFAMILY SSF46894 151 217 6.12E-13 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS19830 4066416b9b65ca6e3dab9229085c0cc2 231 SMART SM00421 162 219 2.9E-9 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS06415 d736889d94c5688eed4091ba8b3beac3 231 TIGRFAM TIGR00659 TIGR00659: TIGR00659 family protein 4 226 3.9E-99 T 29-03-2018 IPR005261 Conserved hypothetical protein CHP00659 AM354_RS06415 d736889d94c5688eed4091ba8b3beac3 231 Pfam PF04172 LrgB-like family 12 223 8.0E-80 T 29-03-2018 IPR007300 CidB/LrgB family AM354_RS12325 343572156b2f8631c4fbead4bb90ea96 102 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 3 64 27.396 T 29-03-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 AM354_RS12325 343572156b2f8631c4fbead4bb90ea96 102 SUPERFAMILY SSF50182 7 69 4.04E-24 T 29-03-2018 IPR010920 LSM domain AM354_RS12325 343572156b2f8631c4fbead4bb90ea96 102 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 5 64 2.0E-29 T 29-03-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 AM354_RS12325 343572156b2f8631c4fbead4bb90ea96 102 Pfam PF17209 Hfq protein 7 69 4.9E-31 T 29-03-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 AM354_RS12325 343572156b2f8631c4fbead4bb90ea96 102 Gene3D G3DSA:2.30.30.100 4 73 1.1E-33 T 29-03-2018 AM354_RS00820 90fb5347c7cb4d8bcf4b393e45e34fe3 268 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 8 263 2.7E-106 T 29-03-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AM354_RS00820 90fb5347c7cb4d8bcf4b393e45e34fe3 268 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 48 61 - T 29-03-2018 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AM354_RS00820 90fb5347c7cb4d8bcf4b393e45e34fe3 268 Gene3D G3DSA:3.20.20.70 2 268 1.6E-76 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS00820 90fb5347c7cb4d8bcf4b393e45e34fe3 268 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 14 265 38.225 T 29-03-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AM354_RS00820 90fb5347c7cb4d8bcf4b393e45e34fe3 268 Pfam PF00290 Tryptophan synthase alpha chain 8 266 2.0E-98 T 29-03-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AM354_RS00820 90fb5347c7cb4d8bcf4b393e45e34fe3 268 SUPERFAMILY SSF51366 1 266 1.51E-93 T 29-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 AM354_RS13405 e174f7f50ce36aa35539d2352c60395e 428 Hamap MF_01300 C4-dicarboxylate transport protein [dctA]. 2 428 38.801 T 29-03-2018 IPR023954 C4-dicarboxylate transport protein GO:0006835|GO:0015293|GO:0016021 AM354_RS13405 e174f7f50ce36aa35539d2352c60395e 428 Pfam PF00375 Sodium:dicarboxylate symporter family 9 401 1.3E-111 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS13405 e174f7f50ce36aa35539d2352c60395e 428 PRINTS PR00173 Glutamate-aspartate symporter signature 292 318 4.5E-37 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS13405 e174f7f50ce36aa35539d2352c60395e 428 PRINTS PR00173 Glutamate-aspartate symporter signature 327 346 4.5E-37 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS13405 e174f7f50ce36aa35539d2352c60395e 428 PRINTS PR00173 Glutamate-aspartate symporter signature 145 167 4.5E-37 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS13405 e174f7f50ce36aa35539d2352c60395e 428 PRINTS PR00173 Glutamate-aspartate symporter signature 44 64 4.5E-37 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS13405 e174f7f50ce36aa35539d2352c60395e 428 PRINTS PR00173 Glutamate-aspartate symporter signature 74 99 4.5E-37 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS13405 e174f7f50ce36aa35539d2352c60395e 428 PRINTS PR00173 Glutamate-aspartate symporter signature 3 23 4.5E-37 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS13405 e174f7f50ce36aa35539d2352c60395e 428 PRINTS PR00173 Glutamate-aspartate symporter signature 192 211 4.5E-37 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS13405 e174f7f50ce36aa35539d2352c60395e 428 SUPERFAMILY SSF118215 9 401 5.62E-121 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS13405 e174f7f50ce36aa35539d2352c60395e 428 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 36 51 - T 29-03-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site AM354_RS13405 e174f7f50ce36aa35539d2352c60395e 428 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 295 318 - T 29-03-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site AM354_RS13405 e174f7f50ce36aa35539d2352c60395e 428 Gene3D G3DSA:1.10.3860.10 1 408 1.8E-114 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS13945 626906dd12098f621711329e7f5d0dbe 279 SUPERFAMILY SSF53850 1 257 1.56E-66 T 29-03-2018 AM354_RS13945 626906dd12098f621711329e7f5d0dbe 279 Gene3D G3DSA:3.40.190.10 3 146 8.4E-36 T 29-03-2018 AM354_RS13945 626906dd12098f621711329e7f5d0dbe 279 SMART SM00062 35 258 1.3E-63 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM354_RS13945 626906dd12098f621711329e7f5d0dbe 279 Gene3D G3DSA:3.40.190.10 147 266 8.0E-13 T 29-03-2018 AM354_RS13945 626906dd12098f621711329e7f5d0dbe 279 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 36 256 6.0E-58 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM354_RS13945 626906dd12098f621711329e7f5d0dbe 279 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 59 72 - T 29-03-2018 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 AM354_RS17275 dc2c4480af7db11427aeeb50878829ea 337 Pfam PF00814 Glycoprotease family 24 307 2.3E-104 T 29-03-2018 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AM354_RS17275 dc2c4480af7db11427aeeb50878829ea 337 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 313 1.2E-136 T 29-03-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AM354_RS17275 dc2c4480af7db11427aeeb50878829ea 337 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 306 4.7E-128 T 29-03-2018 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AM354_RS17275 dc2c4480af7db11427aeeb50878829ea 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 263 272 7.7E-53 T 29-03-2018 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AM354_RS17275 dc2c4480af7db11427aeeb50878829ea 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 76 96 7.7E-53 T 29-03-2018 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AM354_RS17275 dc2c4480af7db11427aeeb50878829ea 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 97 116 7.7E-53 T 29-03-2018 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AM354_RS17275 dc2c4480af7db11427aeeb50878829ea 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 131 143 7.7E-53 T 29-03-2018 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AM354_RS17275 dc2c4480af7db11427aeeb50878829ea 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 7.7E-53 T 29-03-2018 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AM354_RS17275 dc2c4480af7db11427aeeb50878829ea 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 154 175 7.7E-53 T 29-03-2018 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AM354_RS17275 dc2c4480af7db11427aeeb50878829ea 337 Gene3D G3DSA:3.30.420.40 1 144 2.8E-42 T 29-03-2018 AM354_RS17275 dc2c4480af7db11427aeeb50878829ea 337 SUPERFAMILY SSF53067 3 123 9.71E-32 T 29-03-2018 AM354_RS17275 dc2c4480af7db11427aeeb50878829ea 337 ProSitePatterns PS01016 Glycoprotease family signature. 96 116 - T 29-03-2018 IPR017860 Peptidase M22, conserved site KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618|Reactome: R-HSA-6782315 AM354_RS17275 dc2c4480af7db11427aeeb50878829ea 337 Gene3D G3DSA:3.30.420.40 145 289 3.4E-19 T 29-03-2018 AM354_RS17275 dc2c4480af7db11427aeeb50878829ea 337 SUPERFAMILY SSF53067 101 309 7.43E-45 T 29-03-2018 AM354_RS17275 dc2c4480af7db11427aeeb50878829ea 337 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 331 64.061 T 29-03-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AM354_RS11105 e6c8f958bd447909ecbe4506f3fd75e0 147 Pfam PF00583 Acetyltransferase (GNAT) family 18 120 1.6E-18 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS11105 e6c8f958bd447909ecbe4506f3fd75e0 147 SUPERFAMILY SSF55729 3 146 1.93E-32 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS11105 e6c8f958bd447909ecbe4506f3fd75e0 147 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 12 142 1.5E-43 T 29-03-2018 IPR006464 N-acetyltransferase RimI/Ard1 GO:0006474|GO:0016407 AM354_RS11105 e6c8f958bd447909ecbe4506f3fd75e0 147 Gene3D G3DSA:3.40.630.30 1 147 1.0E-32 T 29-03-2018 AM354_RS14845 d889168f15ecf5783c2a9084e63c66de 664 Gene3D G3DSA:3.30.70.270 234 401 2.6E-58 T 29-03-2018 AM354_RS14845 d889168f15ecf5783c2a9084e63c66de 664 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 114 232 1.1E-15 T 29-03-2018 IPR000014 PAS domain AM354_RS14845 d889168f15ecf5783c2a9084e63c66de 664 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 233 393 3.4E-36 T 29-03-2018 IPR000160 GGDEF domain AM354_RS14845 d889168f15ecf5783c2a9084e63c66de 664 Pfam PF00990 Diguanylate cyclase, GGDEF domain 236 389 4.8E-45 T 29-03-2018 IPR000160 GGDEF domain AM354_RS14845 d889168f15ecf5783c2a9084e63c66de 664 SUPERFAMILY SSF141868 411 658 4.58E-85 T 29-03-2018 IPR001633 EAL domain AM354_RS14845 d889168f15ecf5783c2a9084e63c66de 664 Pfam PF00563 EAL domain 411 644 1.1E-68 T 29-03-2018 IPR001633 EAL domain AM354_RS14845 d889168f15ecf5783c2a9084e63c66de 664 SMART SM00091 110 176 3.8E-6 T 29-03-2018 IPR000014 PAS domain AM354_RS14845 d889168f15ecf5783c2a9084e63c66de 664 SMART SM00267 225 394 2.7E-64 T 29-03-2018 IPR000160 GGDEF domain AM354_RS14845 d889168f15ecf5783c2a9084e63c66de 664 SUPERFAMILY SSF55073 242 396 4.71E-47 T 29-03-2018 IPR029787 Nucleotide cyclase AM354_RS14845 d889168f15ecf5783c2a9084e63c66de 664 Pfam PF13426 PAS domain 122 224 1.0E-9 T 29-03-2018 IPR000014 PAS domain AM354_RS14845 d889168f15ecf5783c2a9084e63c66de 664 SMART SM00052 404 649 8.1E-110 T 29-03-2018 IPR001633 EAL domain AM354_RS14845 d889168f15ecf5783c2a9084e63c66de 664 SUPERFAMILY SSF55785 123 233 1.58E-18 T 29-03-2018 IPR000014 PAS domain AM354_RS14845 d889168f15ecf5783c2a9084e63c66de 664 Gene3D G3DSA:3.30.450.20 95 233 7.3E-21 T 29-03-2018 AM354_RS14845 d889168f15ecf5783c2a9084e63c66de 664 Gene3D G3DSA:3.20.20.450 402 662 9.0E-95 T 29-03-2018 IPR001633 EAL domain AM354_RS02165 0c7ee24c9c3cfc06b24b29f769d786b7 406 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 2 336 1.1E-48 T 29-03-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 AM354_RS02165 0c7ee24c9c3cfc06b24b29f769d786b7 406 SUPERFAMILY SSF51395 1 341 6.81E-94 T 29-03-2018 AM354_RS02165 0c7ee24c9c3cfc06b24b29f769d786b7 406 Gene3D G3DSA:3.20.20.70 1 357 9.9E-104 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS02550 f9eb4168d4ef9f3931acaf62b5d305f2 152 Gene3D G3DSA:3.10.20.30 1 73 3.0E-26 T 29-03-2018 IPR012675 Beta-grasp domain AM354_RS02550 f9eb4168d4ef9f3931acaf62b5d305f2 152 Pfam PF01799 [2Fe-2S] binding domain 72 144 2.0E-24 T 29-03-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AM354_RS02550 f9eb4168d4ef9f3931acaf62b5d305f2 152 SUPERFAMILY SSF54292 2 76 4.19E-25 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM354_RS02550 f9eb4168d4ef9f3931acaf62b5d305f2 152 SUPERFAMILY SSF47741 83 151 2.36E-28 T 29-03-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AM354_RS02550 f9eb4168d4ef9f3931acaf62b5d305f2 152 Gene3D G3DSA:1.10.150.120 74 151 6.1E-27 T 29-03-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AM354_RS02550 f9eb4168d4ef9f3931acaf62b5d305f2 152 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 5 61 2.1E-6 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM354_RS02550 f9eb4168d4ef9f3931acaf62b5d305f2 152 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 38 46 - T 29-03-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AM354_RS26095 f6741107bdcf23edd7873bbd67570b29 382 Gene3D G3DSA:3.40.640.10 40 272 3.2E-38 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS26095 f6741107bdcf23edd7873bbd67570b29 382 TIGRFAM TIGR04350 C_S_lyase_PatB: putative C-S lyase 5 377 3.6E-128 T 29-03-2018 IPR027619 Putative C-S lyase KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8|MetaCyc: PWY-6936 AM354_RS26095 f6741107bdcf23edd7873bbd67570b29 382 Gene3D G3DSA:3.90.1150.10 273 380 2.8E-16 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS26095 f6741107bdcf23edd7873bbd67570b29 382 SUPERFAMILY SSF53383 1 377 3.85E-92 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS26095 f6741107bdcf23edd7873bbd67570b29 382 Pfam PF00155 Aminotransferase class I and II 34 372 3.3E-32 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM354_RS12635 01cffc042c37479aab2988f674726b14 529 SMART SM00798 137 461 2.3E-216 T 29-03-2018 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AM354_RS12635 01cffc042c37479aab2988f674726b14 529 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 8 529 1.7E-264 T 29-03-2018 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AM354_RS12635 01cffc042c37479aab2988f674726b14 529 Gene3D G3DSA:3.40.50.1380 1 196 2.7E-78 T 29-03-2018 IPR011607 Methylglyoxal synthase-like domain AM354_RS12635 01cffc042c37479aab2988f674726b14 529 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 7 529 45.649 T 29-03-2018 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AM354_RS12635 01cffc042c37479aab2988f674726b14 529 Gene3D G3DSA:3.40.140.20 226 375 8.9E-57 T 29-03-2018 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AM354_RS12635 01cffc042c37479aab2988f674726b14 529 Gene3D G3DSA:3.40.140.20 376 519 3.1E-53 T 29-03-2018 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AM354_RS12635 01cffc042c37479aab2988f674726b14 529 PIRSF PIRSF000414 1 529 1.3E-229 T 29-03-2018 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AM354_RS12635 01cffc042c37479aab2988f674726b14 529 Pfam PF02142 MGS-like domain 19 132 2.2E-30 T 29-03-2018 IPR011607 Methylglyoxal synthase-like domain AM354_RS12635 01cffc042c37479aab2988f674726b14 529 SMART SM00851 19 132 2.1E-62 T 29-03-2018 IPR011607 Methylglyoxal synthase-like domain AM354_RS12635 01cffc042c37479aab2988f674726b14 529 Pfam PF01808 AICARFT/IMPCHase bienzyme 137 460 1.4E-119 T 29-03-2018 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AM354_RS12635 01cffc042c37479aab2988f674726b14 529 SUPERFAMILY SSF53927 221 529 5.82E-131 T 29-03-2018 IPR016193 Cytidine deaminase-like GO:0003824 AM354_RS12635 01cffc042c37479aab2988f674726b14 529 SUPERFAMILY SSF52335 7 196 5.76E-72 T 29-03-2018 IPR011607 Methylglyoxal synthase-like domain AM354_RS14750 9278bdf5ddf2a087a6de87d12126237c 410 Gene3D G3DSA:1.20.1250.20 197 403 8.0E-26 T 29-03-2018 AM354_RS14750 9278bdf5ddf2a087a6de87d12126237c 410 ProSitePatterns PS00217 Sugar transport proteins signature 2. 107 132 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM354_RS14750 9278bdf5ddf2a087a6de87d12126237c 410 SUPERFAMILY SSF103473 5 396 5.23E-73 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS14750 9278bdf5ddf2a087a6de87d12126237c 410 Pfam PF07690 Major Facilitator Superfamily 21 349 1.7E-38 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS14750 9278bdf5ddf2a087a6de87d12126237c 410 Gene3D G3DSA:1.20.1250.20 5 196 2.4E-36 T 29-03-2018 AM354_RS16450 6e6898c84d2933747baeaddcf259a36d 821 PIRSF PIRSF000437 19 810 0.0 T 29-03-2018 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase GO:0008374|GO:0044255 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166 AM354_RS16450 6e6898c84d2933747baeaddcf259a36d 821 SUPERFAMILY SSF69593 270 485 1.31E-24 T 29-03-2018 AM354_RS16450 6e6898c84d2933747baeaddcf259a36d 821 Pfam PF01553 Acyltransferase 281 423 8.2E-26 T 29-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AM354_RS16450 6e6898c84d2933747baeaddcf259a36d 821 SMART SM00563 299 426 7.4E-28 T 29-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AM354_RS16450 6e6898c84d2933747baeaddcf259a36d 821 Hamap MF_00393 Glycerol-3-phosphate acyltransferase [plsB]. 13 806 32.659 T 29-03-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109 AM354_RS16450 6e6898c84d2933747baeaddcf259a36d 821 TIGRFAM TIGR03703 plsB: glycerol-3-phosphate O-acyltransferase 11 798 0.0 T 29-03-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109 AM354_RS16450 6e6898c84d2933747baeaddcf259a36d 821 PIRSF PIRSF500064 2 813 0.0 T 29-03-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109 AM354_RS16450 6e6898c84d2933747baeaddcf259a36d 821 Gene3D G3DSA:3.40.1130.10 235 528 7.7E-35 T 29-03-2018 AM354_RS05685 8a8474e85122e816dc87217f44fecd45 361 PIRSF PIRSF000525 1 361 6.6E-150 T 29-03-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 AM354_RS05685 8a8474e85122e816dc87217f44fecd45 361 Pfam PF00266 Aminotransferase class-V 4 349 1.9E-65 T 29-03-2018 IPR000192 Aminotransferase class V domain AM354_RS05685 8a8474e85122e816dc87217f44fecd45 361 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 2 360 51.373 T 29-03-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 AM354_RS05685 8a8474e85122e816dc87217f44fecd45 361 SUPERFAMILY SSF53383 3 361 1.03E-116 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS05685 8a8474e85122e816dc87217f44fecd45 361 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 188 207 - T 29-03-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site AM354_RS05685 8a8474e85122e816dc87217f44fecd45 361 TIGRFAM TIGR01364 serC_1: phosphoserine transaminase 4 360 1.7E-155 T 29-03-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 AM354_RS05685 8a8474e85122e816dc87217f44fecd45 361 Gene3D G3DSA:3.40.640.10 16 258 3.7E-28 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS05685 8a8474e85122e816dc87217f44fecd45 361 Gene3D G3DSA:3.90.1150.10 259 359 3.3E-36 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS13685 65dcb7f528027cc0d94612f17ac54974 223 Pfam PF03473 MOSC domain 46 154 3.5E-21 T 29-03-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 AM354_RS13685 65dcb7f528027cc0d94612f17ac54974 223 Pfam PF03475 3-alpha domain 168 211 1.1E-16 T 29-03-2018 IPR005163 3-alpha domain AM354_RS13685 65dcb7f528027cc0d94612f17ac54974 223 SUPERFAMILY SSF50800 5 222 6.28E-74 T 29-03-2018 IPR011037 Pyruvate kinase-like, insert domain AM354_RS13685 65dcb7f528027cc0d94612f17ac54974 223 Gene3D G3DSA:2.40.33.20 1 223 7.0E-50 T 29-03-2018 AM354_RS20135 121d48588d2bb1713be302f7bc41eb4b 1991 Pfam PF00207 Alpha-2-macroglobulin family 1299 1377 6.2E-11 T 29-03-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 AM354_RS20135 121d48588d2bb1713be302f7bc41eb4b 1991 Gene3D G3DSA:2.60.40.10 726 828 0.014 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS20135 121d48588d2bb1713be302f7bc41eb4b 1991 Pfam PF01835 MG2 domain 729 822 9.4E-16 T 29-03-2018 IPR002890 Alpha-2-macroglobulin, N-terminal GO:0004866 AM354_RS20135 121d48588d2bb1713be302f7bc41eb4b 1991 Pfam PF07703 Alpha-2-macroglobulin family N-terminal region 1093 1231 6.2E-15 T 29-03-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 AM354_RS20135 121d48588d2bb1713be302f7bc41eb4b 1991 SUPERFAMILY SSF48239 1501 1760 1.65E-15 T 29-03-2018 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid AM354_RS20135 121d48588d2bb1713be302f7bc41eb4b 1991 Gene3D G3DSA:2.60.40.10 1848 1957 0.014 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS20135 121d48588d2bb1713be302f7bc41eb4b 1991 Gene3D G3DSA:1.50.10.20 1499 1766 2.4E-18 T 29-03-2018 AM354_RS20135 121d48588d2bb1713be302f7bc41eb4b 1991 Gene3D G3DSA:2.60.40.10 1348 1477 1.4E-8 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS20135 121d48588d2bb1713be302f7bc41eb4b 1991 SMART SM01359 1093 1232 4.2E-36 T 29-03-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 AM354_RS20135 121d48588d2bb1713be302f7bc41eb4b 1991 Gene3D G3DSA:2.60.40.10 613 705 1.5E-4 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS20135 121d48588d2bb1713be302f7bc41eb4b 1991 SMART SM01360 1298 1388 5.0E-19 T 29-03-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 AM354_RS20135 121d48588d2bb1713be302f7bc41eb4b 1991 Pfam PF11974 Alpha-2-macroglobulin MG1 domain 615 718 5.3E-24 T 29-03-2018 AM354_RS09140 25ad82c88c047860995e6a14a555eb79 163 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 1 163 29.671 T 29-03-2018 IPR007551 Protein of unknown function DUF520 AM354_RS09140 25ad82c88c047860995e6a14a555eb79 163 SUPERFAMILY SSF89963 2 89 4.71E-30 T 29-03-2018 IPR007551 Protein of unknown function DUF520 AM354_RS09140 25ad82c88c047860995e6a14a555eb79 163 Pfam PF04461 Protein of unknown function (DUF520) 2 162 3.3E-66 T 29-03-2018 IPR007551 Protein of unknown function DUF520 AM354_RS09140 25ad82c88c047860995e6a14a555eb79 163 Gene3D G3DSA:3.30.70.860 98 162 7.0E-35 T 29-03-2018 IPR035571 UPF0234/UPF0381 domain AM354_RS09140 25ad82c88c047860995e6a14a555eb79 163 SUPERFAMILY SSF89963 91 163 2.88E-30 T 29-03-2018 IPR007551 Protein of unknown function DUF520 AM354_RS09140 25ad82c88c047860995e6a14a555eb79 163 Gene3D G3DSA:3.30.70.990 10 97 1.8E-30 T 29-03-2018 IPR035570 UPF0234 N-terminal domain AM354_RS04615 0a81e66a7fbc5d872529d6d871a7946b 172 Pfam PF00210 Ferritin-like domain 8 143 1.1E-39 T 29-03-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 AM354_RS04615 0a81e66a7fbc5d872529d6d871a7946b 172 SUPERFAMILY SSF47240 1 160 5.55E-57 T 29-03-2018 IPR009078 Ferritin-like superfamily AM354_RS04615 0a81e66a7fbc5d872529d6d871a7946b 172 Gene3D G3DSA:1.20.1260.10 1 162 7.1E-43 T 29-03-2018 IPR012347 Ferritin-related AM354_RS23330 75b34309a94aad23027263c93f2e941d 384 Pfam PF07690 Major Facilitator Superfamily 22 322 1.7E-13 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS23330 75b34309a94aad23027263c93f2e941d 384 Gene3D G3DSA:1.20.1250.20 202 384 1.4E-14 T 29-03-2018 AM354_RS23330 75b34309a94aad23027263c93f2e941d 384 SUPERFAMILY SSF103473 20 378 6.93E-35 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS23330 75b34309a94aad23027263c93f2e941d 384 Gene3D G3DSA:1.20.1250.20 18 198 2.3E-13 T 29-03-2018 AM354_RS15845 8cb982b4321991be5f028d131cda8f13 210 ProSitePatterns PS00888 Cyclic nucleotide-binding domain signature 1. 30 46 - T 29-03-2018 IPR018488 Cyclic nucleotide-binding, conserved site AM354_RS15845 8cb982b4321991be5f028d131cda8f13 210 Pfam PF00325 Bacterial regulatory proteins, crp family 166 197 1.8E-15 T 29-03-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AM354_RS15845 8cb982b4321991be5f028d131cda8f13 210 SMART SM00100 2 122 7.6E-27 T 29-03-2018 IPR000595 Cyclic nucleotide-binding domain AM354_RS15845 8cb982b4321991be5f028d131cda8f13 210 SUPERFAMILY SSF46785 139 207 3.64E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS15845 8cb982b4321991be5f028d131cda8f13 210 ProSitePatterns PS00042 Crp-type HTH domain signature. 168 191 - T 29-03-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 AM354_RS15845 8cb982b4321991be5f028d131cda8f13 210 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 71 89 - T 29-03-2018 IPR018488 Cyclic nucleotide-binding, conserved site AM354_RS15845 8cb982b4321991be5f028d131cda8f13 210 Pfam PF00027 Cyclic nucleotide-binding domain 23 109 6.5E-24 T 29-03-2018 IPR000595 Cyclic nucleotide-binding domain AM354_RS15845 8cb982b4321991be5f028d131cda8f13 210 Gene3D G3DSA:1.10.10.10 145 210 9.9E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS15845 8cb982b4321991be5f028d131cda8f13 210 Gene3D G3DSA:2.60.120.10 4 144 7.1E-34 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS15845 8cb982b4321991be5f028d131cda8f13 210 SMART SM00419 160 208 4.5E-17 T 29-03-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AM354_RS15845 8cb982b4321991be5f028d131cda8f13 210 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 166 182 8.8E-11 T 29-03-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AM354_RS15845 8cb982b4321991be5f028d131cda8f13 210 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 182 197 8.8E-11 T 29-03-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AM354_RS15845 8cb982b4321991be5f028d131cda8f13 210 SUPERFAMILY SSF51206 8 136 2.49E-35 T 29-03-2018 IPR018490 Cyclic nucleotide-binding-like AM354_RS11625 b6bc2f162901f072305e3bc98b98db68 255 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 29-03-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AM354_RS11625 b6bc2f162901f072305e3bc98b98db68 255 SMART SM00420 6 58 3.7E-14 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS11625 b6bc2f162901f072305e3bc98b98db68 255 SUPERFAMILY SSF100950 74 234 5.61E-31 T 29-03-2018 AM354_RS11625 b6bc2f162901f072305e3bc98b98db68 255 SUPERFAMILY SSF46785 4 59 2.62E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS11625 b6bc2f162901f072305e3bc98b98db68 255 Gene3D G3DSA:1.10.10.10 1 61 1.8E-9 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS11625 b6bc2f162901f072305e3bc98b98db68 255 SMART SM01134 73 234 5.4E-72 T 29-03-2018 AM354_RS11625 b6bc2f162901f072305e3bc98b98db68 255 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 9.8E-5 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS11625 b6bc2f162901f072305e3bc98b98db68 255 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 9.8E-5 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS11625 b6bc2f162901f072305e3bc98b98db68 255 Gene3D G3DSA:3.40.50.1360 65 233 9.5E-40 T 29-03-2018 AM354_RS11625 b6bc2f162901f072305e3bc98b98db68 255 Pfam PF08220 DeoR-like helix-turn-helix domain 6 59 2.7E-11 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS11625 b6bc2f162901f072305e3bc98b98db68 255 Pfam PF00455 DeoR C terminal sensor domain 75 232 1.4E-52 T 29-03-2018 IPR014036 DeoR C-terminal sensor domain AM354_RS15195 1b76d086ca606f7d5ba8c3d2407d366f 76 Gene3D G3DSA:1.20.1480.30 4 75 2.4E-6 T 29-03-2018 AM354_RS08355 23367ae9c96f6006449391e4fe7910ef 105 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 3 105 23.637 T 29-03-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS AM354_RS08355 23367ae9c96f6006449391e4fe7910ef 105 Gene3D G3DSA:3.30.460.10 1 105 6.0E-33 T 29-03-2018 AM354_RS08355 23367ae9c96f6006449391e4fe7910ef 105 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 8 104 8.4E-37 T 29-03-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS AM354_RS08355 23367ae9c96f6006449391e4fe7910ef 105 Pfam PF02410 Ribosomal silencing factor during starvation 10 104 3.2E-27 T 29-03-2018 AM354_RS08355 23367ae9c96f6006449391e4fe7910ef 105 SUPERFAMILY SSF81301 4 105 1.8E-35 T 29-03-2018 AM354_RS09775 7cdb18e0d24e73293660302d1d70723e 415 SUPERFAMILY SSF53474 46 391 8.11E-45 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS09775 7cdb18e0d24e73293660302d1d70723e 415 Gene3D G3DSA:3.40.50.1820 157 403 1.6E-17 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS09775 7cdb18e0d24e73293660302d1d70723e 415 Hamap MF_01063 Esterase FrsA [frsA]. 1 415 60.72 T 29-03-2018 IPR010520 UPF0255 family AM354_RS09775 7cdb18e0d24e73293660302d1d70723e 415 Gene3D G3DSA:1.20.1440.110 48 156 5.9E-26 T 29-03-2018 AM354_RS09775 7cdb18e0d24e73293660302d1d70723e 415 Pfam PF06500 Alpha/beta hydrolase of unknown function (DUF1100) 1 414 3.6E-193 T 29-03-2018 IPR010520 UPF0255 family AM354_RS02265 d43d81a8d92b817b73b0077a9cd8212b 479 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 364 382 - T 29-03-2018 IPR018511 Hemolysin-type calcium-binding conserved site AM354_RS02265 d43d81a8d92b817b73b0077a9cd8212b 479 Gene3D G3DSA:2.150.10.10 251 479 1.2E-59 T 29-03-2018 AM354_RS02265 d43d81a8d92b817b73b0077a9cd8212b 479 Pfam PF08548 Peptidase M10 serralysin C terminal 256 479 3.0E-83 T 29-03-2018 IPR013858 Peptidase M10 serralysin, C-terminal GO:0005509|GO:0005615 AM354_RS02265 d43d81a8d92b817b73b0077a9cd8212b 479 SUPERFAMILY SSF55486 10 254 4.55E-70 T 29-03-2018 AM354_RS02265 d43d81a8d92b817b73b0077a9cd8212b 479 PIRSF PIRSF001205 1 479 6.4E-214 T 29-03-2018 IPR016294 Peptidase M10B GO:0004222|GO:0005509|GO:0005615|GO:0006508|GO:0008270 AM354_RS02265 d43d81a8d92b817b73b0077a9cd8212b 479 Gene3D G3DSA:3.40.390.10 24 250 1.1E-35 T 29-03-2018 IPR024079 Metallopeptidase, catalytic domain GO:0008237 AM354_RS02265 d43d81a8d92b817b73b0077a9cd8212b 479 PRINTS PR00313 NodO calcium binding signature 359 367 1.7E-12 T 29-03-2018 AM354_RS02265 d43d81a8d92b817b73b0077a9cd8212b 479 PRINTS PR00313 NodO calcium binding signature 368 376 1.7E-12 T 29-03-2018 AM354_RS02265 d43d81a8d92b817b73b0077a9cd8212b 479 PRINTS PR00313 NodO calcium binding signature 338 349 1.7E-12 T 29-03-2018 AM354_RS02265 d43d81a8d92b817b73b0077a9cd8212b 479 PRINTS PR00313 NodO calcium binding signature 377 386 1.7E-12 T 29-03-2018 AM354_RS02265 d43d81a8d92b817b73b0077a9cd8212b 479 SMART SM00235 48 240 8.9E-27 T 29-03-2018 IPR006026 Peptidase, metallopeptidase GO:0006508|GO:0008237|GO:0008270 AM354_RS02265 d43d81a8d92b817b73b0077a9cd8212b 479 SUPERFAMILY SSF51120 257 476 1.7E-49 T 29-03-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AM354_RS19960 56af00288476fa982cbaec9ea11025fb 346 Gene3D G3DSA:3.20.20.100 1 346 7.4E-95 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS19960 56af00288476fa982cbaec9ea11025fb 346 Pfam PF00248 Aldo/keto reductase family 16 337 2.1E-73 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS19960 56af00288476fa982cbaec9ea11025fb 346 SUPERFAMILY SSF51430 1 344 2.49E-107 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS21090 4013e3d27748c741e12aecfaaed6e078 168 Pfam PF14437 MafB19-like deaminase 5 149 4.1E-31 T 29-03-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 AM354_RS21090 4013e3d27748c741e12aecfaaed6e078 168 Gene3D G3DSA:3.40.140.10 1 159 1.0E-52 T 29-03-2018 AM354_RS21090 4013e3d27748c741e12aecfaaed6e078 168 SUPERFAMILY SSF53927 4 155 5.23E-58 T 29-03-2018 IPR016193 Cytidine deaminase-like GO:0003824 AM354_RS21090 4013e3d27748c741e12aecfaaed6e078 168 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 10 151 48.014 T 29-03-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 AM354_RS21090 4013e3d27748c741e12aecfaaed6e078 168 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 55 92 - T 29-03-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 AM354_RS08340 7702d32fdc29fe3530a6066eb61e9f0c 186 Pfam PF04390 Lipopolysaccharide-assembly 35 159 2.8E-16 T 29-03-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 AM354_RS08340 7702d32fdc29fe3530a6066eb61e9f0c 186 Gene3D G3DSA:3.30.160.150 20 173 1.7E-53 T 29-03-2018 AM354_RS08340 7702d32fdc29fe3530a6066eb61e9f0c 186 Hamap MF_01186 LPS-assembly lipoprotein LptE [lptE]. 5 164 27.558 T 29-03-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 AM354_RS16145 dd8b935d762afd5f5c0dce45af04a86c 143 SUPERFAMILY SSF46955 2 121 2.6E-34 T 29-03-2018 IPR009061 Putative DNA-binding domain AM354_RS16145 dd8b935d762afd5f5c0dce45af04a86c 143 ProSitePatterns PS00552 MerR-type HTH domain signature. 5 27 - T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS16145 dd8b935d762afd5f5c0dce45af04a86c 143 SMART SM00422 2 71 1.1E-32 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS16145 dd8b935d762afd5f5c0dce45af04a86c 143 Gene3D G3DSA:1.10.1660.10 58 141 1.2E-24 T 29-03-2018 AM354_RS16145 dd8b935d762afd5f5c0dce45af04a86c 143 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 14 27 5.6E-13 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS16145 dd8b935d762afd5f5c0dce45af04a86c 143 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 3 14 5.6E-13 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS16145 dd8b935d762afd5f5c0dce45af04a86c 143 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 38 58 5.6E-13 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS16145 dd8b935d762afd5f5c0dce45af04a86c 143 TIGRFAM TIGR02043 ZntR: Zn(II)-responsive transcriptional regulator 1 131 4.5E-68 T 29-03-2018 IPR011788 Zn(II)-responsive transcriptional regulator GO:0003677|GO:0006351|GO:0008270 AM354_RS16145 dd8b935d762afd5f5c0dce45af04a86c 143 Pfam PF13411 MerR HTH family regulatory protein 2 69 5.3E-21 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS16145 dd8b935d762afd5f5c0dce45af04a86c 143 Gene3D G3DSA:1.10.1660.10 1 57 1.8E-25 T 29-03-2018 AM354_RS04830 ae3bd836834efc503b74a34a15b72e7c 309 SUPERFAMILY SSF52151 4 122 1.05E-83 T 29-03-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AM354_RS04830 ae3bd836834efc503b74a34a15b72e7c 309 SUPERFAMILY SSF52151 190 308 1.05E-83 T 29-03-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AM354_RS04830 ae3bd836834efc503b74a34a15b72e7c 309 SUPERFAMILY SSF55048 128 197 4.05E-18 T 29-03-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 AM354_RS04830 ae3bd836834efc503b74a34a15b72e7c 309 Gene3D G3DSA:3.40.366.10 1 183 1.7E-53 T 29-03-2018 AM354_RS04830 ae3bd836834efc503b74a34a15b72e7c 309 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 7 307 2.0E-47 T 29-03-2018 IPR020801 Polyketide synthase, acyl transferase domain AM354_RS04830 ae3bd836834efc503b74a34a15b72e7c 309 Pfam PF00698 Acyl transferase domain 6 287 3.9E-41 T 29-03-2018 IPR014043 Acyl transferase AM354_RS04830 ae3bd836834efc503b74a34a15b72e7c 309 PIRSF PIRSF000446 1 309 2.7E-142 T 29-03-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 AM354_RS04830 ae3bd836834efc503b74a34a15b72e7c 309 Gene3D G3DSA:3.40.366.10 184 309 6.5E-32 T 29-03-2018 AM354_RS04830 ae3bd836834efc503b74a34a15b72e7c 309 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 3 291 6.0E-132 T 29-03-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 AM354_RS17980 ab63f51d45f700daafe3815b617b9215 1091 Gene3D G3DSA:3.40.50.300 7 293 5.0E-9 T 29-03-2018 AM354_RS17980 ab63f51d45f700daafe3815b617b9215 1091 Pfam PF07693 KAP family P-loop domain 22 376 1.3E-15 T 29-03-2018 IPR011646 KAP family P-loop domain AM354_RS17980 ab63f51d45f700daafe3815b617b9215 1091 SUPERFAMILY SSF52540 197 331 2.72E-10 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS17980 ab63f51d45f700daafe3815b617b9215 1091 SUPERFAMILY SSF52540 18 89 2.72E-10 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS00165 9570b6978b6e4fce1635f01dd7c9bc72 270 SUPERFAMILY SSF52540 1 268 7.41E-55 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS00165 9570b6978b6e4fce1635f01dd7c9bc72 270 PIRSF PIRSF003092 1 270 2.1E-99 T 29-03-2018 IPR025501 ATP binding protein MinD AM354_RS00165 9570b6978b6e4fce1635f01dd7c9bc72 270 Pfam PF13614 AAA domain 3 160 1.2E-20 T 29-03-2018 IPR025669 AAA domain AM354_RS00165 9570b6978b6e4fce1635f01dd7c9bc72 270 Gene3D G3DSA:3.40.50.300 1 260 9.4E-56 T 29-03-2018 AM354_RS00165 9570b6978b6e4fce1635f01dd7c9bc72 270 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 2 268 1.6E-111 T 29-03-2018 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 AM354_RS25270 503d6e2260bf3cc1a8b9004648c346c4 383 SUPERFAMILY SSF160544 251 355 1.7E-41 T 29-03-2018 IPR029025 Type III secretion system substrate exporter, C-terminal AM354_RS25270 503d6e2260bf3cc1a8b9004648c346c4 383 Pfam PF01312 FlhB HrpN YscU SpaS Family 8 347 7.1E-127 T 29-03-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AM354_RS25270 503d6e2260bf3cc1a8b9004648c346c4 383 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 302 323 6.3E-42 T 29-03-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AM354_RS25270 503d6e2260bf3cc1a8b9004648c346c4 383 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 10 32 6.3E-42 T 29-03-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AM354_RS25270 503d6e2260bf3cc1a8b9004648c346c4 383 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 228 245 6.3E-42 T 29-03-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AM354_RS25270 503d6e2260bf3cc1a8b9004648c346c4 383 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 272 287 6.3E-42 T 29-03-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AM354_RS25270 503d6e2260bf3cc1a8b9004648c346c4 383 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 208 226 6.3E-42 T 29-03-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AM354_RS25270 503d6e2260bf3cc1a8b9004648c346c4 383 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 8 354 1.8E-134 T 29-03-2018 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 AM354_RS25270 503d6e2260bf3cc1a8b9004648c346c4 383 Gene3D G3DSA:3.40.1690.10 218 353 4.0E-59 T 29-03-2018 IPR029025 Type III secretion system substrate exporter, C-terminal AM354_RS24550 6509855b460dabd6e4d320e63ac1fbec 233 SMART SM00421 136 193 4.4E-9 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS24550 6509855b460dabd6e4d320e63ac1fbec 233 SUPERFAMILY SSF46894 129 198 1.94E-15 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS24550 6509855b460dabd6e4d320e63ac1fbec 233 Gene3D G3DSA:1.10.10.10 32 203 1.9E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS24550 6509855b460dabd6e4d320e63ac1fbec 233 Pfam PF00196 Bacterial regulatory proteins, luxR family 139 192 4.8E-12 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS22710 e39c9a4fb6ea00fa7a4b97e37801120e 210 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 2 191 2.2E-80 T 29-03-2018 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004|GO:0030288 AM354_RS22710 e39c9a4fb6ea00fa7a4b97e37801120e 210 Gene3D G3DSA:3.40.50.300 1 191 7.6E-41 T 29-03-2018 AM354_RS22710 e39c9a4fb6ea00fa7a4b97e37801120e 210 SMART SM00382 26 204 5.5E-4 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS22710 e39c9a4fb6ea00fa7a4b97e37801120e 210 SUPERFAMILY SSF52540 2 188 2.11E-42 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS22710 e39c9a4fb6ea00fa7a4b97e37801120e 210 Pfam PF00005 ABC transporter 18 157 2.3E-27 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS22710 e39c9a4fb6ea00fa7a4b97e37801120e 210 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS06465 9b7e769098cb17873b9c2c806ae44420 385 Gene3D G3DSA:1.20.1250.20 4 191 1.1E-9 T 29-03-2018 AM354_RS06465 9b7e769098cb17873b9c2c806ae44420 385 Pfam PF06779 Uncharacterised MFS-type transporter YbfB 13 370 4.1E-88 T 29-03-2018 IPR010645 Uncharacterised MFS-type transporter YbfB AM354_RS06465 9b7e769098cb17873b9c2c806ae44420 385 Gene3D G3DSA:1.20.1250.20 194 384 2.4E-8 T 29-03-2018 AM354_RS06465 9b7e769098cb17873b9c2c806ae44420 385 SUPERFAMILY SSF103473 5 374 4.19E-24 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS13135 214783bb03e9a7abbc2460352c5b8bfd 187 Pfam PF08786 DcrB 52 182 3.1E-26 T 29-03-2018 IPR014894 Protein DcrB AM354_RS13135 214783bb03e9a7abbc2460352c5b8bfd 187 Gene3D G3DSA:3.40.1000.10 42 187 4.0E-15 T 29-03-2018 AM354_RS22640 e5d22516a997e2fc6c3847319542d52c 151 Pfam PF05656 Protein of unknown function (DUF805) 13 135 4.6E-8 T 29-03-2018 IPR008523 Protein of unknown function DUF805 GO:0016021 AM354_RS22640 e5d22516a997e2fc6c3847319542d52c 151 Gene3D G3DSA:1.20.1560.10 1 93 9.2E-5 T 29-03-2018 AM354_RS00980 93ebaf43737a2cfb451bec055de31f40 99 Gene3D G3DSA:1.10.1220.10 1 99 7.1E-16 T 29-03-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AM354_RS00980 93ebaf43737a2cfb451bec055de31f40 99 SUPERFAMILY SSF47598 1 45 4.08E-9 T 29-03-2018 IPR010985 Ribbon-helix-helix GO:0006355 AM354_RS00980 93ebaf43737a2cfb451bec055de31f40 99 Pfam PF03869 Arc-like DNA binding domain 8 45 2.5E-5 T 29-03-2018 IPR005569 Arc-like DNA binding domain GO:0003677 AM354_RS19660 3407e2fb5b4d6055b26ccbab2293bb7b 665 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 19 504 2.6E-195 T 29-03-2018 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 AM354_RS19660 3407e2fb5b4d6055b26ccbab2293bb7b 665 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 57 504 2.1E-162 T 29-03-2018 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 AM354_RS19660 3407e2fb5b4d6055b26ccbab2293bb7b 665 ProSitePatterns PS01303 BCCT family of transporters signature. 321 330 - T 29-03-2018 IPR018093 BCCT transporter, conserved site GO:0005215|GO:0006810|GO:0016020 AM354_RS13400 f7f0b903314005c0572ae01462da8c91 500 Pfam PF00675 Insulinase (Peptidase family M16) 52 160 3.6E-9 T 29-03-2018 IPR011765 Peptidase M16, N-terminal AM354_RS13400 f7f0b903314005c0572ae01462da8c91 500 SUPERFAMILY SSF63411 29 240 1.75E-24 T 29-03-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AM354_RS13400 f7f0b903314005c0572ae01462da8c91 500 Gene3D G3DSA:3.30.830.10 257 472 1.1E-28 T 29-03-2018 AM354_RS13400 f7f0b903314005c0572ae01462da8c91 500 SUPERFAMILY SSF63411 265 467 1.87E-7 T 29-03-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AM354_RS13400 f7f0b903314005c0572ae01462da8c91 500 Gene3D G3DSA:3.30.830.10 8 256 1.6E-27 T 29-03-2018 AM354_RS13400 f7f0b903314005c0572ae01462da8c91 500 Pfam PF05193 Peptidase M16 inactive domain 201 378 5.1E-19 T 29-03-2018 IPR007863 Peptidase M16, C-terminal AM354_RS04455 e67393e6e6fc9024903f8409773beab3 104 Pfam PF12840 Helix-turn-helix domain 5 63 1.0E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS04455 e67393e6e6fc9024903f8409773beab3 104 Gene3D G3DSA:1.10.10.10 2 104 7.7E-25 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS04455 e67393e6e6fc9024903f8409773beab3 104 SUPERFAMILY SSF46785 5 95 1.78E-27 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS04455 e67393e6e6fc9024903f8409773beab3 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 54 69 4.0E-14 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS04455 e67393e6e6fc9024903f8409773beab3 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 39 54 4.0E-14 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS04455 e67393e6e6fc9024903f8409773beab3 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 7 22 4.0E-14 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS04455 e67393e6e6fc9024903f8409773beab3 104 SMART SM00418 5 83 2.4E-22 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS00170 861736d06f22983c3346e92a8d952f16 231 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 5 231 28.903 T 29-03-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 AM354_RS00170 861736d06f22983c3346e92a8d952f16 231 Gene3D G3DSA:2.160.20.70 113 231 5.1E-31 T 29-03-2018 AM354_RS00170 861736d06f22983c3346e92a8d952f16 231 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 127 227 1.2E-30 T 29-03-2018 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 AM354_RS00170 861736d06f22983c3346e92a8d952f16 231 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 6 230 6.5E-74 T 29-03-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 AM354_RS00170 861736d06f22983c3346e92a8d952f16 231 Pfam PF05209 Septum formation inhibitor MinC, N-terminal domain 1 102 4.4E-35 T 29-03-2018 IPR007874 Septum formation inhibitor MinC, N-terminal GO:0051302 AM354_RS00170 861736d06f22983c3346e92a8d952f16 231 SUPERFAMILY SSF63848 125 230 5.1E-31 T 29-03-2018 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 AM354_RS04820 7546342fdd6ce8031c9e2a5ef69dd3ee 78 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 1 76 1.1E-36 T 29-03-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 AM354_RS04820 7546342fdd6ce8031c9e2a5ef69dd3ee 78 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 29-03-2018 IPR006162 Phosphopantetheine attachment site AM354_RS04820 7546342fdd6ce8031c9e2a5ef69dd3ee 78 SUPERFAMILY SSF47336 2 76 9.55E-23 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS04820 7546342fdd6ce8031c9e2a5ef69dd3ee 78 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 21.925 T 29-03-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 AM354_RS04820 7546342fdd6ce8031c9e2a5ef69dd3ee 78 Pfam PF00550 Phosphopantetheine attachment site 6 73 3.1E-15 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS04820 7546342fdd6ce8031c9e2a5ef69dd3ee 78 Gene3D G3DSA:1.10.1200.10 1 78 9.1E-27 T 29-03-2018 AM354_RS12570 bcfb4b966ef2819479e84bf21dd11bf5 697 Pfam PF00593 TonB dependent receptor 276 690 1.1E-39 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS12570 bcfb4b966ef2819479e84bf21dd11bf5 697 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 680 697 - T 29-03-2018 IPR010917 TonB-dependent receptor, conserved site AM354_RS12570 bcfb4b966ef2819479e84bf21dd11bf5 697 Gene3D G3DSA:2.170.130.10 47 194 1.7E-14 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS12570 bcfb4b966ef2819479e84bf21dd11bf5 697 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 64 - T 29-03-2018 IPR010916 TonB box, conserved site AM354_RS12570 bcfb4b966ef2819479e84bf21dd11bf5 697 Gene3D G3DSA:2.40.170.20 195 697 3.2E-61 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS12570 bcfb4b966ef2819479e84bf21dd11bf5 697 Pfam PF07715 TonB-dependent Receptor Plug Domain 71 185 4.6E-9 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS12570 bcfb4b966ef2819479e84bf21dd11bf5 697 SUPERFAMILY SSF56935 53 697 8.42E-91 T 29-03-2018 AM354_RS09260 90702eb953cc7fd2f11990e4cc4f8aa0 587 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 34 543 5.1E-172 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AM354_RS09260 90702eb953cc7fd2f11990e4cc4f8aa0 587 ProSitePatterns PS00462 Gamma-glutamyltranspeptidase signature. 375 399 - T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AM354_RS09260 90702eb953cc7fd2f11990e4cc4f8aa0 587 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 440 455 4.2E-78 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AM354_RS09260 90702eb953cc7fd2f11990e4cc4f8aa0 587 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 246 262 4.2E-78 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AM354_RS09260 90702eb953cc7fd2f11990e4cc4f8aa0 587 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 276 295 4.2E-78 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AM354_RS09260 90702eb953cc7fd2f11990e4cc4f8aa0 587 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 375 393 4.2E-78 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AM354_RS09260 90702eb953cc7fd2f11990e4cc4f8aa0 587 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 399 417 4.2E-78 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AM354_RS09260 90702eb953cc7fd2f11990e4cc4f8aa0 587 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 464 481 4.2E-78 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AM354_RS09260 90702eb953cc7fd2f11990e4cc4f8aa0 587 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 129 147 4.2E-78 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AM354_RS09260 90702eb953cc7fd2f11990e4cc4f8aa0 587 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 147 166 4.2E-78 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AM354_RS09260 90702eb953cc7fd2f11990e4cc4f8aa0 587 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 56 81 4.2E-78 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AM354_RS09260 90702eb953cc7fd2f11990e4cc4f8aa0 587 Pfam PF01019 Gamma-glutamyltranspeptidase 49 578 3.1E-181 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AM354_RS09260 90702eb953cc7fd2f11990e4cc4f8aa0 587 SUPERFAMILY SSF56235 26 587 2.51E-185 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AM354_RS09780 5e8cd80235e7980616f8eede639a1f53 152 Hamap MF_01903 Xanthine phosphoribosyltransferase [gpt]. 1 152 40.851 T 29-03-2018 IPR023747 Xanthine-guanine phosphoribosyltransferase GO:0000310 KEGG: 00230+2.4.2.22 AM354_RS09780 5e8cd80235e7980616f8eede639a1f53 152 Pfam PF00156 Phosphoribosyl transferase domain 12 145 6.2E-18 T 29-03-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AM354_RS09780 5e8cd80235e7980616f8eede639a1f53 152 SUPERFAMILY SSF53271 4 143 4.33E-33 T 29-03-2018 IPR029057 Phosphoribosyltransferase-like AM354_RS09780 5e8cd80235e7980616f8eede639a1f53 152 Gene3D G3DSA:3.40.50.2020 1 151 2.6E-29 T 29-03-2018 AM354_RS06350 c114a4a251f2d103ae4271d95c7b36c6 297 SUPERFAMILY SSF53448 1 293 4.06E-57 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS06350 c114a4a251f2d103ae4271d95c7b36c6 297 Gene3D G3DSA:3.90.550.10 1 296 1.7E-50 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS06350 c114a4a251f2d103ae4271d95c7b36c6 297 Pfam PF00483 Nucleotidyl transferase 5 252 1.3E-20 T 29-03-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AM354_RS03465 1f6ddca67c989bb707ab756fab700e96 314 Gene3D G3DSA:3.40.50.1980 192 312 3.6E-33 T 29-03-2018 AM354_RS03465 1f6ddca67c989bb707ab756fab700e96 314 Pfam PF01297 Zinc-uptake complex component A periplasmic 47 310 7.1E-80 T 29-03-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 AM354_RS03465 1f6ddca67c989bb707ab756fab700e96 314 PRINTS PR00690 Adhesin family signature 88 105 4.7E-44 T 29-03-2018 IPR006128 Adhesion lipoprotein GO:0007155 AM354_RS03465 1f6ddca67c989bb707ab756fab700e96 314 PRINTS PR00690 Adhesin family signature 199 220 4.7E-44 T 29-03-2018 IPR006128 Adhesion lipoprotein GO:0007155 AM354_RS03465 1f6ddca67c989bb707ab756fab700e96 314 PRINTS PR00690 Adhesin family signature 44 62 4.7E-44 T 29-03-2018 IPR006128 Adhesion lipoprotein GO:0007155 AM354_RS03465 1f6ddca67c989bb707ab756fab700e96 314 PRINTS PR00690 Adhesin family signature 278 297 4.7E-44 T 29-03-2018 IPR006128 Adhesion lipoprotein GO:0007155 AM354_RS03465 1f6ddca67c989bb707ab756fab700e96 314 PRINTS PR00690 Adhesin family signature 75 88 4.7E-44 T 29-03-2018 IPR006128 Adhesion lipoprotein GO:0007155 AM354_RS03465 1f6ddca67c989bb707ab756fab700e96 314 PRINTS PR00690 Adhesin family signature 252 270 4.7E-44 T 29-03-2018 IPR006128 Adhesion lipoprotein GO:0007155 AM354_RS03465 1f6ddca67c989bb707ab756fab700e96 314 SUPERFAMILY SSF53807 41 313 1.13E-92 T 29-03-2018 AM354_RS03465 1f6ddca67c989bb707ab756fab700e96 314 Gene3D G3DSA:3.40.50.1980 34 191 4.2E-48 T 29-03-2018 AM354_RS03465 1f6ddca67c989bb707ab756fab700e96 314 PRINTS PR00691 Adhesin B signature 44 65 4.5E-36 T 29-03-2018 IPR006129 Adhesin B GO:0007155 AM354_RS03465 1f6ddca67c989bb707ab756fab700e96 314 PRINTS PR00691 Adhesin B signature 248 265 4.5E-36 T 29-03-2018 IPR006129 Adhesin B GO:0007155 AM354_RS03465 1f6ddca67c989bb707ab756fab700e96 314 PRINTS PR00691 Adhesin B signature 225 243 4.5E-36 T 29-03-2018 IPR006129 Adhesin B GO:0007155 AM354_RS03465 1f6ddca67c989bb707ab756fab700e96 314 PRINTS PR00691 Adhesin B signature 88 107 4.5E-36 T 29-03-2018 IPR006129 Adhesin B GO:0007155 AM354_RS03465 1f6ddca67c989bb707ab756fab700e96 314 PRINTS PR00691 Adhesin B signature 270 288 4.5E-36 T 29-03-2018 IPR006129 Adhesin B GO:0007155 AM354_RS03465 1f6ddca67c989bb707ab756fab700e96 314 PRINTS PR00691 Adhesin B signature 199 216 4.5E-36 T 29-03-2018 IPR006129 Adhesin B GO:0007155 AM354_RS03465 1f6ddca67c989bb707ab756fab700e96 314 PRINTS PR00691 Adhesin B signature 69 87 4.5E-36 T 29-03-2018 IPR006129 Adhesin B GO:0007155 AM354_RS15895 275212abc7602ae4e9bd92e698783c78 282 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 7 272 2.1E-66 T 29-03-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 AM354_RS15895 275212abc7602ae4e9bd92e698783c78 282 SUPERFAMILY SSF51197 5 280 6.41E-97 T 29-03-2018 AM354_RS15895 275212abc7602ae4e9bd92e698783c78 282 Gene3D G3DSA:3.60.130.10 1 282 1.0E-81 T 29-03-2018 AM354_RS22285 b289f5d3220f61fa7b6919bc83c56d9b 340 SUPERFAMILY SSF53850 27 334 7.77E-79 T 29-03-2018 AM354_RS22285 b289f5d3220f61fa7b6919bc83c56d9b 340 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 21 334 3.2E-158 T 29-03-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 AM354_RS22285 b289f5d3220f61fa7b6919bc83c56d9b 340 Pfam PF13531 Bacterial extracellular solute-binding protein 50 288 8.1E-41 T 29-03-2018 AM354_RS22285 b289f5d3220f61fa7b6919bc83c56d9b 340 Gene3D G3DSA:3.40.190.10 136 337 1.5E-38 T 29-03-2018 AM354_RS22285 b289f5d3220f61fa7b6919bc83c56d9b 340 Gene3D G3DSA:3.40.190.10 26 135 1.0E-15 T 29-03-2018 AM354_RS09405 67a2e69d732d028e62dc7aa17309ab13 166 Gene3D G3DSA:1.10.10.10 73 166 2.5E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS09405 67a2e69d732d028e62dc7aa17309ab13 166 SUPERFAMILY SSF88659 91 165 9.16E-16 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS09405 67a2e69d732d028e62dc7aa17309ab13 166 Pfam PF08281 Sigma-70, region 4 107 159 2.8E-15 T 29-03-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS09405 67a2e69d732d028e62dc7aa17309ab13 166 SUPERFAMILY SSF88946 6 91 7.06E-15 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS09405 67a2e69d732d028e62dc7aa17309ab13 166 Pfam PF04542 Sigma-70 region 2 9 76 6.8E-11 T 29-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS09405 67a2e69d732d028e62dc7aa17309ab13 166 Gene3D G3DSA:1.10.1740.10 2 72 1.3E-14 T 29-03-2018 AM354_RS09405 67a2e69d732d028e62dc7aa17309ab13 166 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 5 160 1.0E-26 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM354_RS15270 07670831a0b1d774f96f66cf6b72ecf0 339 Gene3D G3DSA:3.40.50.720 152 267 5.1E-23 T 29-03-2018 AM354_RS15270 07670831a0b1d774f96f66cf6b72ecf0 339 Pfam PF00107 Zinc-binding dehydrogenase 162 256 1.4E-15 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AM354_RS15270 07670831a0b1d774f96f66cf6b72ecf0 339 SUPERFAMILY SSF51735 127 259 3.09E-38 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS15270 07670831a0b1d774f96f66cf6b72ecf0 339 SUPERFAMILY SSF50129 5 146 5.39E-30 T 29-03-2018 IPR011032 GroES-like AM354_RS15270 07670831a0b1d774f96f66cf6b72ecf0 339 Pfam PF16884 N-terminal domain of oxidoreductase 8 112 3.2E-32 T 29-03-2018 AM354_RS15270 07670831a0b1d774f96f66cf6b72ecf0 339 SMART SM00829 19 336 4.6E-4 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AM354_RS15270 07670831a0b1d774f96f66cf6b72ecf0 339 Gene3D G3DSA:3.90.180.10 1 151 3.5E-30 T 29-03-2018 AM354_RS20880 065c398be7b311c756f3c845d38f3fd3 1037 Pfam PF03903 Phage T4 tail fibre 402 535 3.1E-17 T 29-03-2018 IPR005601 Tail fibre protein p36 AM354_RS20880 065c398be7b311c756f3c845d38f3fd3 1037 Pfam PF12571 Phage tail-collar fibre protein 1 158 7.5E-39 T 29-03-2018 IPR022225 Phage tail fibre protein AM354_RS05355 a21bebd0bc88494b1381b5b30ce26577 203 Pfam PF00196 Bacterial regulatory proteins, luxR family 141 190 2.5E-9 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS05355 a21bebd0bc88494b1381b5b30ce26577 203 SUPERFAMILY SSF46894 134 190 6.8E-12 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS05355 a21bebd0bc88494b1381b5b30ce26577 203 Gene3D G3DSA:1.10.10.10 41 193 1.1E-9 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS05355 a21bebd0bc88494b1381b5b30ce26577 203 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 171 183 4.4E-5 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS05355 a21bebd0bc88494b1381b5b30ce26577 203 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 141 155 4.4E-5 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS05355 a21bebd0bc88494b1381b5b30ce26577 203 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 171 4.4E-5 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS05355 a21bebd0bc88494b1381b5b30ce26577 203 SMART SM00421 138 195 1.7E-5 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS21055 ea158048f1cf5f018e65c64024c777c2 126 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 3 126 2.7E-53 T 29-03-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 AM354_RS21055 ea158048f1cf5f018e65c64024c777c2 126 Gene3D G3DSA:3.90.470.20 1 126 8.6E-39 T 29-03-2018 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 AM354_RS21055 ea158048f1cf5f018e65c64024c777c2 126 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 5 122 3.3E-23 T 29-03-2018 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 AM354_RS21055 ea158048f1cf5f018e65c64024c777c2 126 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 4 126 2.5E-36 T 29-03-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 AM354_RS21055 ea158048f1cf5f018e65c64024c777c2 126 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 4 126 26.422 T 29-03-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 AM354_RS21055 ea158048f1cf5f018e65c64024c777c2 126 SUPERFAMILY SSF56214 3 125 6.67E-30 T 29-03-2018 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 AM354_RS21055 ea158048f1cf5f018e65c64024c777c2 126 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 9 93 2.0E-37 T 29-03-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 AM354_RS14400 5d4916a8e5ce1b44396ae161552bc681 321 TIGRFAM TIGR02193 heptsyl_trn_I: lipopolysaccharide heptosyltransferase I 2 319 3.2E-125 T 29-03-2018 IPR011908 Lipopolysaccharide heptosyltransferase I GO:0008920|GO:0009244 AM354_RS14400 5d4916a8e5ce1b44396ae161552bc681 321 Gene3D G3DSA:3.40.50.2000 1 163 1.6E-40 T 29-03-2018 AM354_RS14400 5d4916a8e5ce1b44396ae161552bc681 321 SUPERFAMILY SSF53756 1 320 2.51E-76 T 29-03-2018 AM354_RS14400 5d4916a8e5ce1b44396ae161552bc681 321 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 77 308 5.9E-71 T 29-03-2018 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 AM354_RS14400 5d4916a8e5ce1b44396ae161552bc681 321 Gene3D G3DSA:3.40.50.2000 164 321 3.4E-34 T 29-03-2018 AM354_RS21815 c747a648c37f99fa0f1571a569e41c02 475 Hamap MF_01577 Putative multidrug resistance protein MdtD [mdtD]. 1 465 43.279 T 29-03-2018 IPR023721 Multidrug resistance protein MdtD, putative AM354_RS21815 c747a648c37f99fa0f1571a569e41c02 475 Gene3D G3DSA:1.20.1250.20 255 467 5.7E-22 T 29-03-2018 AM354_RS21815 c747a648c37f99fa0f1571a569e41c02 475 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 16 424 2.4E-69 T 29-03-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 AM354_RS21815 c747a648c37f99fa0f1571a569e41c02 475 Pfam PF07690 Major Facilitator Superfamily 15 405 3.2E-47 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS21815 c747a648c37f99fa0f1571a569e41c02 475 Gene3D G3DSA:1.20.1250.20 6 196 1.1E-32 T 29-03-2018 AM354_RS21815 c747a648c37f99fa0f1571a569e41c02 475 SUPERFAMILY SSF103473 244 450 5.89E-58 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS21815 c747a648c37f99fa0f1571a569e41c02 475 SUPERFAMILY SSF103473 8 194 5.89E-58 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS21815 c747a648c37f99fa0f1571a569e41c02 475 PRINTS PR01036 Tetracycline resistance protein TetB signature 199 217 4.2E-9 T 29-03-2018 AM354_RS21815 c747a648c37f99fa0f1571a569e41c02 475 PRINTS PR01036 Tetracycline resistance protein TetB signature 105 125 4.2E-9 T 29-03-2018 AM354_RS21815 c747a648c37f99fa0f1571a569e41c02 475 PRINTS PR01036 Tetracycline resistance protein TetB signature 396 415 4.2E-9 T 29-03-2018 AM354_RS21815 c747a648c37f99fa0f1571a569e41c02 475 PRINTS PR01036 Tetracycline resistance protein TetB signature 14 38 4.2E-9 T 29-03-2018 AM354_RS21815 c747a648c37f99fa0f1571a569e41c02 475 PRINTS PR01036 Tetracycline resistance protein TetB signature 135 159 4.2E-9 T 29-03-2018 AM354_RS21815 c747a648c37f99fa0f1571a569e41c02 475 PRINTS PR01036 Tetracycline resistance protein TetB signature 160 184 4.2E-9 T 29-03-2018 AM354_RS15935 78ad1f6669603521b7351d39bb9d6641 390 Gene3D G3DSA:3.90.1150.10 280 389 8.5E-20 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS15935 78ad1f6669603521b7351d39bb9d6641 390 SUPERFAMILY SSF53383 1 389 3.99E-98 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS15935 78ad1f6669603521b7351d39bb9d6641 390 Pfam PF00155 Aminotransferase class I and II 40 385 1.9E-41 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM354_RS15935 78ad1f6669603521b7351d39bb9d6641 390 TIGRFAM TIGR04350 C_S_lyase_PatB: putative C-S lyase 5 387 3.9E-125 T 29-03-2018 IPR027619 Putative C-S lyase KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8|MetaCyc: PWY-6936 AM354_RS15935 78ad1f6669603521b7351d39bb9d6641 390 Gene3D G3DSA:3.40.640.10 45 279 1.6E-45 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS06990 dd1f798e2acffcca96551da3ba24a15f 164 Pfam PF11086 Protein of unknown function (DUF2878) 9 152 4.1E-23 T 29-03-2018 IPR021306 Protein of unknown function DUF2878 AM354_RS08005 47e7a269ee7eff6966f4bb267bac6d14 290 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 3 288 1.1E-146 T 29-03-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AM354_RS08005 47e7a269ee7eff6966f4bb267bac6d14 290 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 1.2E-39 T 29-03-2018 AM354_RS08005 47e7a269ee7eff6966f4bb267bac6d14 290 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 1.2E-39 T 29-03-2018 AM354_RS08005 47e7a269ee7eff6966f4bb267bac6d14 290 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 1.2E-39 T 29-03-2018 AM354_RS08005 47e7a269ee7eff6966f4bb267bac6d14 290 PRINTS PR01798 Succinyl-CoA synthase signature 240 257 1.2E-39 T 29-03-2018 AM354_RS08005 47e7a269ee7eff6966f4bb267bac6d14 290 Pfam PF02629 CoA binding domain 6 99 1.6E-31 T 29-03-2018 IPR003781 CoA-binding GO:0048037 AM354_RS08005 47e7a269ee7eff6966f4bb267bac6d14 290 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 288 43.495 T 29-03-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AM354_RS08005 47e7a269ee7eff6966f4bb267bac6d14 290 SUPERFAMILY SSF51735 1 122 4.6E-44 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS08005 47e7a269ee7eff6966f4bb267bac6d14 290 SUPERFAMILY SSF52210 123 288 1.7E-57 T 29-03-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AM354_RS08005 47e7a269ee7eff6966f4bb267bac6d14 290 Gene3D G3DSA:3.40.50.261 120 290 2.3E-56 T 29-03-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AM354_RS08005 47e7a269ee7eff6966f4bb267bac6d14 290 PIRSF PIRSF001553 1 290 1.3E-135 T 29-03-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AM354_RS08005 47e7a269ee7eff6966f4bb267bac6d14 290 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 236 249 - T 29-03-2018 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site AM354_RS08005 47e7a269ee7eff6966f4bb267bac6d14 290 Pfam PF00549 CoA-ligase 151 271 7.2E-21 T 29-03-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AM354_RS08005 47e7a269ee7eff6966f4bb267bac6d14 290 Gene3D G3DSA:3.40.50.720 1 119 9.0E-45 T 29-03-2018 AM354_RS08005 47e7a269ee7eff6966f4bb267bac6d14 290 SMART SM00881 4 100 1.2E-37 T 29-03-2018 IPR003781 CoA-binding GO:0048037 AM354_RS08005 47e7a269ee7eff6966f4bb267bac6d14 290 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 152 181 - T 29-03-2018 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site AM354_RS21835 bcc86dde31f6510f486d92a8eb0df4a0 317 Pfam PF00248 Aldo/keto reductase family 16 314 2.6E-71 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS21835 bcc86dde31f6510f486d92a8eb0df4a0 317 SUPERFAMILY SSF51430 1 314 5.37E-94 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS21835 bcc86dde31f6510f486d92a8eb0df4a0 317 Gene3D G3DSA:3.20.20.100 4 317 4.4E-87 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS21835 bcc86dde31f6510f486d92a8eb0df4a0 317 PRINTS PR00069 Aldo-keto reductase signature 110 128 2.2E-6 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM354_RS21835 bcc86dde31f6510f486d92a8eb0df4a0 317 PRINTS PR00069 Aldo-keto reductase signature 141 158 2.2E-6 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM354_RS21280 3b86584febeff14f3cea1be02a876e0a 398 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 31 378 74.781 T 29-03-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AM354_RS21280 3b86584febeff14f3cea1be02a876e0a 398 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 30 383 6.1E-174 T 29-03-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AM354_RS21280 3b86584febeff14f3cea1be02a876e0a 398 SUPERFAMILY SSF102114 130 347 4.45E-15 T 29-03-2018 AM354_RS21280 3b86584febeff14f3cea1be02a876e0a 398 Gene3D G3DSA:3.20.20.70 40 373 4.1E-42 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS21280 3b86584febeff14f3cea1be02a876e0a 398 Pfam PF04055 Radical SAM superfamily 134 304 1.9E-17 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AM354_RS21280 3b86584febeff14f3cea1be02a876e0a 398 PIRSF PIRSF006004 23 391 3.1E-147 T 29-03-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AM354_RS15825 a772e5fa71472c6d29ed475b2e9cc42c 508 Gene3D G3DSA:3.40.50.300 7 376 1.0E-26 T 29-03-2018 AM354_RS15825 a772e5fa71472c6d29ed475b2e9cc42c 508 SMART SM00382 27 334 0.0085 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS15825 a772e5fa71472c6d29ed475b2e9cc42c 508 SUPERFAMILY SSF52540 19 374 4.67E-51 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS15825 a772e5fa71472c6d29ed475b2e9cc42c 508 Pfam PF05872 Bacterial protein of unknown function (DUF853) 11 508 9.6E-232 T 29-03-2018 IPR033186 Helicase HerA-like C-terminal AM354_RS08970 5fce0e52e7a4664adc39635ef963d30b 147 Pfam PF11356 Type II secretion system protein C 3 145 1.7E-14 T 29-03-2018 IPR024961 Type II secretion system protein C, N-terminal AM354_RS00635 8624ed107918f64aaa441090e4f05f56 222 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 11 71 1.2E-11 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM354_RS00635 8624ed107918f64aaa441090e4f05f56 222 SUPERFAMILY SSF51306 126 216 1.7E-20 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AM354_RS00635 8624ed107918f64aaa441090e4f05f56 222 Gene3D G3DSA:2.10.109.10 105 217 1.1E-14 T 29-03-2018 AM354_RS00635 8624ed107918f64aaa441090e4f05f56 222 SUPERFAMILY SSF47413 8 71 4.38E-8 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS00635 8624ed107918f64aaa441090e4f05f56 222 SMART SM00530 11 68 1.5E-5 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM354_RS00635 8624ed107918f64aaa441090e4f05f56 222 Gene3D G3DSA:1.10.260.40 2 73 1.1E-10 T 29-03-2018 AM354_RS00635 8624ed107918f64aaa441090e4f05f56 222 Pfam PF00717 Peptidase S24-like 135 199 6.9E-12 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AM354_RS07980 beb94457f4fb71ec6c33d9b938c3af59 98 Pfam PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) 18 95 5.7E-33 T 29-03-2018 IPR011846 Cyd operon protein YbgE AM354_RS07980 beb94457f4fb71ec6c33d9b938c3af59 98 TIGRFAM TIGR02112 cyd_oper_ybgE: cyd operon protein YbgE 6 96 1.7E-37 T 29-03-2018 IPR011846 Cyd operon protein YbgE AM354_RS06150 9ff3916ab4a83671d7698878e6e18d08 461 Pfam PF00474 Sodium:solute symporter family 32 412 2.0E-36 T 29-03-2018 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 AM354_RS06150 9ff3916ab4a83671d7698878e6e18d08 461 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 394 414 - T 29-03-2018 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 AM354_RS07375 e7b77643d3b7e72f3dcf3d7cdc214a39 241 SUPERFAMILY SSF54197 20 239 4.14E-82 T 29-03-2018 IPR011146 HIT-like domain GO:0003824 AM354_RS07375 e7b77643d3b7e72f3dcf3d7cdc214a39 241 PIRSF PIRSF001273 8 241 2.5E-75 T 29-03-2018 IPR003763 CDP-diacylglycerol pyrophosphatase GO:0008654|GO:0008715|GO:0016020 KEGG: 00564+3.6.1.26 AM354_RS07375 e7b77643d3b7e72f3dcf3d7cdc214a39 241 Pfam PF02611 CDP-diacylglycerol pyrophosphatase 20 238 8.1E-84 T 29-03-2018 IPR003763 CDP-diacylglycerol pyrophosphatase GO:0008654|GO:0008715|GO:0016020 KEGG: 00564+3.6.1.26 AM354_RS07375 e7b77643d3b7e72f3dcf3d7cdc214a39 241 Gene3D G3DSA:3.30.428.30 18 238 2.6E-82 T 29-03-2018 AM354_RS25700 2554ce450be4bf5cc492b6e2256a43ad 351 Gene3D G3DSA:3.40.50.2000 1 171 2.1E-9 T 29-03-2018 AM354_RS25700 2554ce450be4bf5cc492b6e2256a43ad 351 Pfam PF00534 Glycosyl transferases group 1 176 330 3.8E-40 T 29-03-2018 IPR001296 Glycosyl transferase, family 1 AM354_RS25700 2554ce450be4bf5cc492b6e2256a43ad 351 Pfam PF13439 Glycosyltransferase Family 4 17 163 1.4E-11 T 29-03-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193 AM354_RS25700 2554ce450be4bf5cc492b6e2256a43ad 351 SUPERFAMILY SSF53756 5 349 1.08E-73 T 29-03-2018 AM354_RS25700 2554ce450be4bf5cc492b6e2256a43ad 351 Gene3D G3DSA:3.40.50.2000 172 336 1.4E-44 T 29-03-2018 AM354_RS11465 66b315a15aa9d144c953ff6796586d40 305 SUPERFAMILY SSF46785 3 86 4.45E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS11465 66b315a15aa9d144c953ff6796586d40 305 Pfam PF03466 LysR substrate binding domain 93 294 1.9E-41 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS11465 66b315a15aa9d144c953ff6796586d40 305 Gene3D G3DSA:3.40.190.10 91 177 9.6E-23 T 29-03-2018 AM354_RS11465 66b315a15aa9d144c953ff6796586d40 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 1.7E-20 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS11465 66b315a15aa9d144c953ff6796586d40 305 SUPERFAMILY SSF53850 93 297 6.65E-42 T 29-03-2018 AM354_RS11465 66b315a15aa9d144c953ff6796586d40 305 Gene3D G3DSA:3.40.190.10 178 268 4.2E-19 T 29-03-2018 AM354_RS11465 66b315a15aa9d144c953ff6796586d40 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 8.6E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS11465 66b315a15aa9d144c953ff6796586d40 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 8.6E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS11465 66b315a15aa9d144c953ff6796586d40 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 8.6E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS11465 66b315a15aa9d144c953ff6796586d40 305 Gene3D G3DSA:1.10.10.10 1 85 4.6E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS11185 106d991489cd47dc734f2d279d8b7b3e 258 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 250 5.8E-48 T 29-03-2018 AM354_RS11185 106d991489cd47dc734f2d279d8b7b3e 258 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM354_RS11185 106d991489cd47dc734f2d279d8b7b3e 258 SUPERFAMILY SSF51735 6 251 3.24E-63 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS11185 106d991489cd47dc734f2d279d8b7b3e 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 2.3E-9 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11185 106d991489cd47dc734f2d279d8b7b3e 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 2.3E-9 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11185 106d991489cd47dc734f2d279d8b7b3e 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 2.3E-9 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11185 106d991489cd47dc734f2d279d8b7b3e 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 2.3E-33 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11185 106d991489cd47dc734f2d279d8b7b3e 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 2.3E-33 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11185 106d991489cd47dc734f2d279d8b7b3e 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 2.3E-33 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11185 106d991489cd47dc734f2d279d8b7b3e 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 2.3E-33 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11185 106d991489cd47dc734f2d279d8b7b3e 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 2.3E-33 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11185 106d991489cd47dc734f2d279d8b7b3e 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 2.3E-33 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11185 106d991489cd47dc734f2d279d8b7b3e 258 Gene3D G3DSA:3.40.50.720 1 258 1.0E-58 T 29-03-2018 AM354_RS12480 3a6d6e0adb150a80593df9fc6a4757f8 433 PIRSF PIRSF004539 1 433 4.3E-177 T 29-03-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 AM354_RS12480 3a6d6e0adb150a80593df9fc6a4757f8 433 Pfam PF03605 Anaerobic c4-dicarboxylate membrane transporter 5 365 6.4E-144 T 29-03-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 AM354_RS12480 3a6d6e0adb150a80593df9fc6a4757f8 433 TIGRFAM TIGR00770 Dcu: transporter, anaerobic C4-dicarboxylate uptake (Dcu) family 5 433 9.0E-199 T 29-03-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 AM354_RS10910 222c909bb340f7c4646250c326f0e97a 478 PRINTS PR00175 Sodium/alanine symporter signature 178 196 5.9E-56 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AM354_RS10910 222c909bb340f7c4646250c326f0e97a 478 PRINTS PR00175 Sodium/alanine symporter signature 303 321 5.9E-56 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AM354_RS10910 222c909bb340f7c4646250c326f0e97a 478 PRINTS PR00175 Sodium/alanine symporter signature 350 372 5.9E-56 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AM354_RS10910 222c909bb340f7c4646250c326f0e97a 478 PRINTS PR00175 Sodium/alanine symporter signature 87 109 5.9E-56 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AM354_RS10910 222c909bb340f7c4646250c326f0e97a 478 PRINTS PR00175 Sodium/alanine symporter signature 206 225 5.9E-56 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AM354_RS10910 222c909bb340f7c4646250c326f0e97a 478 PRINTS PR00175 Sodium/alanine symporter signature 411 431 5.9E-56 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AM354_RS10910 222c909bb340f7c4646250c326f0e97a 478 TIGRFAM TIGR00835 agcS: amino acid carrier protein 13 442 1.6E-160 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AM354_RS10910 222c909bb340f7c4646250c326f0e97a 478 Pfam PF01235 Sodium:alanine symporter family 48 453 8.2E-160 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AM354_RS10910 222c909bb340f7c4646250c326f0e97a 478 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 87 102 - T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AM354_RS13475 c8aff20fdfe8456327a4615127dd8f10 339 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 336 1.5E-47 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS13475 c8aff20fdfe8456327a4615127dd8f10 339 Gene3D G3DSA:1.10.3720.10 3 325 1.2E-46 T 29-03-2018 AM354_RS13475 c8aff20fdfe8456327a4615127dd8f10 339 SUPERFAMILY SSF161098 89 160 1.05E-21 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS13475 c8aff20fdfe8456327a4615127dd8f10 339 SUPERFAMILY SSF161098 200 322 1.05E-21 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS05525 877a96e796e6fe916b172cecb7e53f16 321 Gene3D G3DSA:3.40.190.10 136 318 9.0E-32 T 29-03-2018 AM354_RS05525 877a96e796e6fe916b172cecb7e53f16 321 Gene3D G3DSA:3.40.190.10 30 135 1.2E-17 T 29-03-2018 AM354_RS05525 877a96e796e6fe916b172cecb7e53f16 321 Pfam PF09084 NMT1/THI5 like 73 189 2.6E-10 T 29-03-2018 IPR015168 SsuA/THI5-like AM354_RS05525 877a96e796e6fe916b172cecb7e53f16 321 SUPERFAMILY SSF53850 33 265 1.14E-47 T 29-03-2018 AM354_RS05525 877a96e796e6fe916b172cecb7e53f16 321 SMART SM00062 35 266 3.4E-23 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM354_RS05525 877a96e796e6fe916b172cecb7e53f16 321 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 37 317 1.8E-82 T 29-03-2018 IPR010067 Aliphatic sulfonates-binding protein GO:0016020|GO:0042626 AM354_RS11870 eaff780043274c05bbb811ddbd94ea5f 210 SUPERFAMILY SSF51735 2 196 3.73E-39 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS11870 eaff780043274c05bbb811ddbd94ea5f 210 Pfam PF13460 NAD(P)H-binding 8 191 3.8E-11 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS11870 eaff780043274c05bbb811ddbd94ea5f 210 SMART SM00859 3 95 0.0092 T 29-03-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AM354_RS11870 eaff780043274c05bbb811ddbd94ea5f 210 Gene3D G3DSA:3.40.50.720 2 209 4.2E-18 T 29-03-2018 AM354_RS16795 d92cdcf7c4cd9fe435af6ea7caf4300b 446 Pfam PF01523 Putative modulator of DNA gyrase 32 323 3.3E-60 T 29-03-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 AM354_RS16795 d92cdcf7c4cd9fe435af6ea7caf4300b 446 SUPERFAMILY SSF111283 14 445 6.8E-128 T 29-03-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 AM354_RS16795 d92cdcf7c4cd9fe435af6ea7caf4300b 446 Gene3D G3DSA:3.30.2290.10 6 232 4.1E-57 T 29-03-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal domain AM354_RS23925 e97bdb94bce7d475aa206a3bf3c41f0a 579 Gene3D G3DSA:3.40.50.980 16 183 9.1E-28 T 29-03-2018 AM354_RS23925 e97bdb94bce7d475aa206a3bf3c41f0a 579 Pfam PF00501 AMP-binding enzyme 47 464 2.1E-74 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM354_RS23925 e97bdb94bce7d475aa206a3bf3c41f0a 579 Gene3D G3DSA:3.30.300.30 456 563 6.5E-16 T 29-03-2018 AM354_RS23925 e97bdb94bce7d475aa206a3bf3c41f0a 579 Gene3D G3DSA:2.30.38.10 367 455 2.7E-18 T 29-03-2018 AM354_RS23925 e97bdb94bce7d475aa206a3bf3c41f0a 579 Gene3D G3DSA:3.40.50.980 184 356 1.7E-33 T 29-03-2018 AM354_RS23925 e97bdb94bce7d475aa206a3bf3c41f0a 579 SUPERFAMILY SSF56801 19 353 6.41E-99 T 29-03-2018 AM354_RS23925 e97bdb94bce7d475aa206a3bf3c41f0a 579 SUPERFAMILY SSF56801 380 564 6.41E-99 T 29-03-2018 AM354_RS23925 e97bdb94bce7d475aa206a3bf3c41f0a 579 Pfam PF14535 AMP-binding enzyme C-terminal domain 465 555 1.1E-6 T 29-03-2018 IPR028154 AMP-dependent ligase, C-terminal AM354_RS15180 54e2737e90917bbe14ba83600deef55c 184 Pfam PF06252 Protein of unknown function (DUF1018) 21 147 1.6E-27 T 29-03-2018 IPR009363 Bacteriophage Mu, Gp16 AM354_RS06040 273baade9c5b20a627e6270fb24ee55f 221 Gene3D G3DSA:1.10.10.10 9 199 2.8E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS06040 273baade9c5b20a627e6270fb24ee55f 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 171 1.1E-5 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS06040 273baade9c5b20a627e6270fb24ee55f 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 141 155 1.1E-5 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS06040 273baade9c5b20a627e6270fb24ee55f 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 171 183 1.1E-5 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS06040 273baade9c5b20a627e6270fb24ee55f 221 SMART SM00421 138 195 5.0E-15 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS06040 273baade9c5b20a627e6270fb24ee55f 221 Pfam PF00196 Bacterial regulatory proteins, luxR family 141 192 9.4E-14 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS06040 273baade9c5b20a627e6270fb24ee55f 221 SUPERFAMILY SSF46894 136 196 9.18E-16 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS07135 20f7b461969345ca666116d0539271e3 268 SUPERFAMILY SSF52540 25 266 9.65E-58 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS07135 20f7b461969345ca666116d0539271e3 268 TIGRFAM TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD 27 268 1.3E-114 T 29-03-2018 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD AM354_RS07135 20f7b461969345ca666116d0539271e3 268 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 245 267 1.4E-8 T 29-03-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AM354_RS07135 20f7b461969345ca666116d0539271e3 268 Pfam PF00005 ABC transporter 43 197 8.7E-29 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS07135 20f7b461969345ca666116d0539271e3 268 Gene3D G3DSA:3.40.50.300 14 267 1.8E-59 T 29-03-2018 AM354_RS09380 eb761bfcc5972ddfc8368a3534b9dfc4 443 Pfam PF00529 HlyD membrane-fusion protein of T1SS 34 401 3.4E-19 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AM354_RS09380 eb761bfcc5972ddfc8368a3534b9dfc4 443 Gene3D G3DSA:2.40.50.100 63 137 2.6E-10 T 29-03-2018 AM354_RS09380 eb761bfcc5972ddfc8368a3534b9dfc4 443 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 22 443 4.5E-124 T 29-03-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 AM354_RS09380 eb761bfcc5972ddfc8368a3534b9dfc4 443 ProSitePatterns PS00543 HlyD family secretion proteins signature. 407 429 - T 29-03-2018 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 AM354_RS09380 eb761bfcc5972ddfc8368a3534b9dfc4 443 SUPERFAMILY SSF111369 268 329 3.79E-5 T 29-03-2018 AM354_RS09380 eb761bfcc5972ddfc8368a3534b9dfc4 443 Gene3D G3DSA:1.20.5.340 146 286 7.3E-5 T 29-03-2018 AM354_RS09380 eb761bfcc5972ddfc8368a3534b9dfc4 443 Gene3D G3DSA:2.40.50.100 287 351 4.9E-5 T 29-03-2018 AM354_RS09380 eb761bfcc5972ddfc8368a3534b9dfc4 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 340 364 3.3E-67 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AM354_RS09380 eb761bfcc5972ddfc8368a3534b9dfc4 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 364 387 3.3E-67 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AM354_RS09380 eb761bfcc5972ddfc8368a3534b9dfc4 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 307 328 3.3E-67 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AM354_RS09380 eb761bfcc5972ddfc8368a3534b9dfc4 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 422 442 3.3E-67 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AM354_RS09380 eb761bfcc5972ddfc8368a3534b9dfc4 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 32 55 3.3E-67 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AM354_RS09380 eb761bfcc5972ddfc8368a3534b9dfc4 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 74 94 3.3E-67 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AM354_RS09380 eb761bfcc5972ddfc8368a3534b9dfc4 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 407 422 3.3E-67 T 29-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AM354_RS12195 a5bf124e4a77d036f3e1df75df3904ec 185 Gene3D G3DSA:3.40.30.10 13 185 4.5E-6 T 29-03-2018 AM354_RS12195 a5bf124e4a77d036f3e1df75df3904ec 185 Pfam PF09695 Bacterial protein of unknown function (YtfJ_HI0045) 24 181 3.7E-79 T 29-03-2018 IPR006513 Conserved hypothetical protein CHP01626, YtfJ AM354_RS12195 a5bf124e4a77d036f3e1df75df3904ec 185 TIGRFAM TIGR01626 ytfJ_HI0045: conserved hypothetical protein YtfJ-family, TIGR01626 1 183 6.5E-84 T 29-03-2018 IPR006513 Conserved hypothetical protein CHP01626, YtfJ AM354_RS15840 f395165b2b6c0ecb7be1b4ab5d820fa3 692 Pfam PF13515 Fusaric acid resistance protein-like 378 497 2.7E-19 T 29-03-2018 AM354_RS15840 f395165b2b6c0ecb7be1b4ab5d820fa3 692 Pfam PF12805 FUSC-like inner membrane protein yccS 63 330 3.0E-67 T 29-03-2018 IPR032692 Integral membrane protein YccS, N-terminal AM354_RS15840 f395165b2b6c0ecb7be1b4ab5d820fa3 692 TIGRFAM TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family 12 672 7.0E-188 T 29-03-2018 IPR010020 Integral membrane protein, YccS/YhfK AM354_RS17680 c7edb09bbb8ec473980ecf2d755d9031 300 Gene3D G3DSA:3.40.50.1980 17 139 1.7E-27 T 29-03-2018 AM354_RS17680 c7edb09bbb8ec473980ecf2d755d9031 300 SUPERFAMILY SSF53807 35 292 7.85E-56 T 29-03-2018 AM354_RS17680 c7edb09bbb8ec473980ecf2d755d9031 300 Gene3D G3DSA:3.40.50.1980 140 300 8.9E-29 T 29-03-2018 AM354_RS17680 c7edb09bbb8ec473980ecf2d755d9031 300 Pfam PF01497 Periplasmic binding protein 40 269 1.1E-29 T 29-03-2018 IPR002491 ABC transporter periplasmic binding domain GO:0005488 AM354_RS13565 e28f88c10e450619ab0f288f9ace6bc9 447 SUPERFAMILY SSF63829 93 113 6.34E-5 T 29-03-2018 AM354_RS13565 e28f88c10e450619ab0f288f9ace6bc9 447 SUPERFAMILY SSF63829 242 258 6.34E-5 T 29-03-2018 AM354_RS13565 e28f88c10e450619ab0f288f9ace6bc9 447 SUPERFAMILY SSF63829 145 210 6.34E-5 T 29-03-2018 AM354_RS13565 e28f88c10e450619ab0f288f9ace6bc9 447 Gene3D G3DSA:2.120.10.30 87 313 4.5E-5 T 29-03-2018 IPR011042 Six-bladed beta-propeller, TolB-like AM354_RS13565 e28f88c10e450619ab0f288f9ace6bc9 447 Pfam PF13449 Esterase-like activity of phytase 90 421 1.0E-66 T 29-03-2018 IPR027372 Phytase-like domain AM354_RS15910 476100452543c360d175e6dcea7a5a95 602 Hamap MF_01412 Glutathione-regulated potassium-efflux system protein KefB [kefB]. 2 599 48.845 T 29-03-2018 IPR020884 Glutathione-regulated potassium-efflux system protein KefB GO:0005886|GO:0006813|GO:0015503 AM354_RS15910 476100452543c360d175e6dcea7a5a95 602 Gene3D G3DSA:1.20.91.10 228 314 9.0E-11 T 29-03-2018 AM354_RS15910 476100452543c360d175e6dcea7a5a95 602 SUPERFAMILY SSF51735 402 530 1.33E-29 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS15910 476100452543c360d175e6dcea7a5a95 602 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 14 283 3.1E-88 T 29-03-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 AM354_RS15910 476100452543c360d175e6dcea7a5a95 602 Pfam PF02254 TrkA-N domain 403 514 1.6E-24 T 29-03-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 AM354_RS15910 476100452543c360d175e6dcea7a5a95 602 Gene3D G3DSA:3.40.50.720 398 561 2.0E-19 T 29-03-2018 AM354_RS15910 476100452543c360d175e6dcea7a5a95 602 Pfam PF00999 Sodium/hydrogen exchanger family 10 373 3.6E-68 T 29-03-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AM354_RS01755 98b0ac377f484d86ee6a75ec8979da6b 305 SUPERFAMILY SSF103481 189 291 4.84E-9 T 29-03-2018 AM354_RS01755 98b0ac377f484d86ee6a75ec8979da6b 305 Pfam PF00892 EamA-like transporter family 161 285 1.5E-9 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM354_RS01755 98b0ac377f484d86ee6a75ec8979da6b 305 SUPERFAMILY SSF103481 48 139 1.96E-5 T 29-03-2018 AM354_RS01200 4cd2c18b8d807396d79794b036a0581c 186 Gene3D G3DSA:2.160.10.10 8 180 4.5E-32 T 29-03-2018 AM354_RS01200 4cd2c18b8d807396d79794b036a0581c 186 SUPERFAMILY SSF51161 8 137 1.07E-30 T 29-03-2018 IPR011004 Trimeric LpxA-like AM354_RS01200 4cd2c18b8d807396d79794b036a0581c 186 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 18 44 0.003 T 29-03-2018 IPR001451 Hexapeptide repeat AM354_RS01200 4cd2c18b8d807396d79794b036a0581c 186 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 79 111 1.8E-4 T 29-03-2018 IPR001451 Hexapeptide repeat AM354_RS07485 3898337ccc76679e8a1a0d2e94765f6d 238 ProSitePatterns PS00211 ABC transporters family signature. 120 134 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS07485 3898337ccc76679e8a1a0d2e94765f6d 238 Gene3D G3DSA:3.40.50.300 1 215 8.3E-57 T 29-03-2018 AM354_RS07485 3898337ccc76679e8a1a0d2e94765f6d 238 SUPERFAMILY SSF52540 2 207 6.41E-58 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS07485 3898337ccc76679e8a1a0d2e94765f6d 238 Pfam PF00005 ABC transporter 3 148 1.2E-32 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS07485 3898337ccc76679e8a1a0d2e94765f6d 238 SMART SM00382 12 192 1.1E-17 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS25925 12a3723307059aebfddae1b30a1590ce 344 SUPERFAMILY SSF56281 53 291 4.72E-39 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS25925 12a3723307059aebfddae1b30a1590ce 344 Gene3D G3DSA:3.60.15.10 34 340 3.5E-64 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS25925 12a3723307059aebfddae1b30a1590ce 344 SMART SM00849 77 284 4.5E-4 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS25925 12a3723307059aebfddae1b30a1590ce 344 Pfam PF12706 Beta-lactamase superfamily domain 88 285 1.3E-45 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS25925 12a3723307059aebfddae1b30a1590ce 344 PIRSF PIRSF038896 2 329 5.1E-105 T 29-03-2018 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D GO:0008270|GO:0070290 Reactome: R-HSA-2466712 AM354_RS19270 06646f49be3aacd296c1218ceb7bbeda 374 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 183 372 2.0E-20 T 29-03-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 AM354_RS19270 06646f49be3aacd296c1218ceb7bbeda 374 Pfam PF00355 Rieske [2Fe-2S] domain 46 134 8.0E-20 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AM354_RS19270 06646f49be3aacd296c1218ceb7bbeda 374 Gene3D G3DSA:2.102.10.10 44 150 7.6E-27 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AM354_RS19270 06646f49be3aacd296c1218ceb7bbeda 374 SUPERFAMILY SSF55961 164 372 3.22E-35 T 29-03-2018 AM354_RS19270 06646f49be3aacd296c1218ceb7bbeda 374 SUPERFAMILY SSF50022 17 159 9.04E-47 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AM354_RS19270 06646f49be3aacd296c1218ceb7bbeda 374 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 31 56 4.6E-24 T 29-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 AM354_RS19270 06646f49be3aacd296c1218ceb7bbeda 374 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 144 170 4.6E-24 T 29-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 AM354_RS19270 06646f49be3aacd296c1218ceb7bbeda 374 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 82 102 4.6E-24 T 29-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 AM354_RS19270 06646f49be3aacd296c1218ceb7bbeda 374 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 61 76 4.6E-24 T 29-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 AM354_RS19270 06646f49be3aacd296c1218ceb7bbeda 374 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 103 123 4.6E-24 T 29-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 AM354_RS19270 06646f49be3aacd296c1218ceb7bbeda 374 Gene3D G3DSA:3.90.380.10 151 364 2.5E-37 T 29-03-2018 AM354_RS11080 a795c3bf5596bbd2a5f72a767504f63f 372 Gene3D G3DSA:3.40.1090.10 12 264 3.5E-28 T 29-03-2018 AM354_RS11080 a795c3bf5596bbd2a5f72a767504f63f 372 SUPERFAMILY SSF52151 21 279 1.39E-44 T 29-03-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AM354_RS11080 a795c3bf5596bbd2a5f72a767504f63f 372 Pfam PF01734 Patatin-like phospholipase 27 195 1.3E-21 T 29-03-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 AM354_RS06935 65f9902a9c11c5536cb0cde79b392046 130 Gene3D G3DSA:3.30.429.10 1 130 3.5E-26 T 29-03-2018 AM354_RS06935 65f9902a9c11c5536cb0cde79b392046 130 SUPERFAMILY SSF55331 2 127 1.96E-35 T 29-03-2018 IPR014347 Tautomerase/MIF superfamily AM354_RS06935 65f9902a9c11c5536cb0cde79b392046 130 Pfam PF14552 Tautomerase enzyme 38 119 4.2E-27 T 29-03-2018 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 AM354_RS16435 9ba72880edfbdb8b73568430dab7c499 460 Gene3D G3DSA:1.20.1250.20 27 246 9.4E-25 T 29-03-2018 AM354_RS16435 9ba72880edfbdb8b73568430dab7c499 460 Pfam PF00083 Sugar (and other) transporter 78 454 7.1E-27 T 29-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AM354_RS16435 9ba72880edfbdb8b73568430dab7c499 460 Gene3D G3DSA:1.20.1250.20 259 459 2.2E-21 T 29-03-2018 AM354_RS16435 9ba72880edfbdb8b73568430dab7c499 460 SUPERFAMILY SSF103473 19 454 3.14E-68 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS25405 ab9daec794e1b3f25dfcd7e58815811a 138 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 57 127 2.5E-25 T 29-03-2018 IPR001543 Surface presentation of antigen (SpoA) AM354_RS25405 ab9daec794e1b3f25dfcd7e58815811a 138 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 54 129 1.7E-33 T 29-03-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 AM354_RS25405 ab9daec794e1b3f25dfcd7e58815811a 138 Pfam PF16973 Flagellar motor switch protein FliN N-terminal 1 50 1.0E-24 T 29-03-2018 IPR031576 Flagellar motor switch protein FliN, N-terminal AM354_RS25405 ab9daec794e1b3f25dfcd7e58815811a 138 Gene3D G3DSA:2.30.330.10 43 138 2.1E-30 T 29-03-2018 IPR001543 Surface presentation of antigen (SpoA) AM354_RS25405 ab9daec794e1b3f25dfcd7e58815811a 138 PRINTS PR00956 Flagellar motor switch protein FliN signature 90 103 2.2E-30 T 29-03-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 AM354_RS25405 ab9daec794e1b3f25dfcd7e58815811a 138 PRINTS PR00956 Flagellar motor switch protein FliN signature 103 118 2.2E-30 T 29-03-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 AM354_RS25405 ab9daec794e1b3f25dfcd7e58815811a 138 PRINTS PR00956 Flagellar motor switch protein FliN signature 57 73 2.2E-30 T 29-03-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 AM354_RS25405 ab9daec794e1b3f25dfcd7e58815811a 138 PRINTS PR00956 Flagellar motor switch protein FliN signature 74 90 2.2E-30 T 29-03-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 AM354_RS25405 ab9daec794e1b3f25dfcd7e58815811a 138 SUPERFAMILY SSF101801 55 136 8.63E-27 T 29-03-2018 IPR001543 Surface presentation of antigen (SpoA) AM354_RS09105 3017a4d8e28cc06ae9e8f77e2258d665 492 Pfam PF07690 Major Facilitator Superfamily 17 366 7.4E-33 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS09105 3017a4d8e28cc06ae9e8f77e2258d665 492 TIGRFAM TIGR00901 2A0125: AmpG-like permease 25 363 2.0E-119 T 29-03-2018 IPR004752 AmpG-like permease/Acetyl-coenzyme A transporter 1 GO:0016020 Reactome: R-HSA-425397 AM354_RS09105 3017a4d8e28cc06ae9e8f77e2258d665 492 Gene3D G3DSA:1.20.1250.20 208 408 2.4E-16 T 29-03-2018 AM354_RS09105 3017a4d8e28cc06ae9e8f77e2258d665 492 Gene3D G3DSA:1.20.1250.20 1 200 3.9E-24 T 29-03-2018 AM354_RS09105 3017a4d8e28cc06ae9e8f77e2258d665 492 SUPERFAMILY SSF103473 9 406 1.07E-44 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS08275 9df80a2ff03e23bb41fe574e89b5ee07 111 Pfam PF08274 PhnA Zinc-Ribbon 2 31 1.3E-17 T 29-03-2018 IPR013987 PhnA protein, N-terminal AM354_RS08275 9df80a2ff03e23bb41fe574e89b5ee07 111 Gene3D G3DSA:2.20.25.10 1 39 3.9E-17 T 29-03-2018 AM354_RS08275 9df80a2ff03e23bb41fe574e89b5ee07 111 SUPERFAMILY SSF82057 39 110 2.61E-29 T 29-03-2018 AM354_RS08275 9df80a2ff03e23bb41fe574e89b5ee07 111 Gene3D G3DSA:2.30.30.40 43 110 1.4E-37 T 29-03-2018 AM354_RS08275 9df80a2ff03e23bb41fe574e89b5ee07 111 Pfam PF03831 PhnA domain 44 111 9.9E-35 T 29-03-2018 IPR013988 PhnA protein, C-terminal AM354_RS08275 9df80a2ff03e23bb41fe574e89b5ee07 111 TIGRFAM TIGR00686 phnA: putative alkylphosphonate utilization operon protein PhnA 2 111 2.1E-59 T 29-03-2018 IPR004624 PhnA protein AM354_RS08275 9df80a2ff03e23bb41fe574e89b5ee07 111 SUPERFAMILY SSF57783 1 36 1.87E-14 T 29-03-2018 AM354_RS07285 f3f3fb20a7b493c04c9d7c0f9564c5be 218 Gene3D G3DSA:3.40.50.10070 29 185 2.8E-13 T 29-03-2018 AM354_RS07285 f3f3fb20a7b493c04c9d7c0f9564c5be 218 Pfam PF05643 Putative bacterial lipoprotein (DUF799) 10 210 9.0E-95 T 29-03-2018 IPR008517 Protein of unknown function DUF799 AM354_RS00070 a74ae1257692c23824924a63d65222f2 261 Gene3D G3DSA:1.10.3470.10 1 261 5.7E-26 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS00070 a74ae1257692c23824924a63d65222f2 261 SUPERFAMILY SSF81345 3 257 1.57E-39 T 29-03-2018 IPR029022 ABC transporter, BtuC-like AM354_RS00070 a74ae1257692c23824924a63d65222f2 261 Pfam PF00950 ABC 3 transport family 1 257 6.4E-84 T 29-03-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 AM354_RS09705 01134aba474e0af4f1034e4b5c6f7099 159 SUPERFAMILY SSF51182 35 157 5.63E-31 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS09705 01134aba474e0af4f1034e4b5c6f7099 159 Gene3D G3DSA:2.60.120.10 21 159 6.6E-30 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS09705 01134aba474e0af4f1034e4b5c6f7099 159 Pfam PF07883 Cupin domain 68 128 3.6E-12 T 29-03-2018 IPR013096 Cupin 2, conserved barrel AM354_RS04700 25ad7b0120717eba9ee010136e8a8d44 395 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 76 300 9.0E-19 T 29-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AM354_RS04700 25ad7b0120717eba9ee010136e8a8d44 395 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 52 381 4.8E-83 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AM354_RS04700 25ad7b0120717eba9ee010136e8a8d44 395 Gene3D G3DSA:2.40.50.100 76 148 7.2E-21 T 29-03-2018 AM354_RS04700 25ad7b0120717eba9ee010136e8a8d44 395 Gene3D G3DSA:2.40.50.100 176 357 3.9E-5 T 29-03-2018 AM354_RS04700 25ad7b0120717eba9ee010136e8a8d44 395 SUPERFAMILY SSF111369 67 304 4.84E-69 T 29-03-2018 AM354_RS04835 5347c44e2aa09842a9560828c503239e 317 Gene3D G3DSA:3.40.47.10 2 161 4.7E-38 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS04835 5347c44e2aa09842a9560828c503239e 317 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 1 317 70.674 T 29-03-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 AM354_RS04835 5347c44e2aa09842a9560828c503239e 317 Gene3D G3DSA:3.40.47.10 162 317 3.2E-43 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS04835 5347c44e2aa09842a9560828c503239e 317 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 228 316 1.9E-36 T 29-03-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 AM354_RS04835 5347c44e2aa09842a9560828c503239e 317 SUPERFAMILY SSF53901 4 317 4.14E-71 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS04835 5347c44e2aa09842a9560828c503239e 317 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 106 183 2.0E-31 T 29-03-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 AM354_RS04835 5347c44e2aa09842a9560828c503239e 317 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 1 317 1.5E-147 T 29-03-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 AM354_RS14745 25c45c103daa3bbbf265a4ba998a1378 507 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 6 493 3.5E-213 T 29-03-2018 IPR004482 Mg chelatase-related protein AM354_RS14745 25c45c103daa3bbbf265a4ba998a1378 507 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 401 493 6.4E-28 T 29-03-2018 IPR025158 Mg chelatase-related protein, C-terminal domain AM354_RS14745 25c45c103daa3bbbf265a4ba998a1378 507 Gene3D G3DSA:3.30.230.10 2 188 8.4E-41 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AM354_RS14745 25c45c103daa3bbbf265a4ba998a1378 507 Pfam PF01078 Magnesium chelatase, subunit ChlI 190 390 2.4E-90 T 29-03-2018 IPR000523 Magnesium chelatase ChlI domain AM354_RS14745 25c45c103daa3bbbf265a4ba998a1378 507 SUPERFAMILY SSF52540 189 504 9.21E-51 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS14745 25c45c103daa3bbbf265a4ba998a1378 507 Gene3D G3DSA:3.40.50.300 189 387 4.4E-26 T 29-03-2018 AM354_RS14745 25c45c103daa3bbbf265a4ba998a1378 507 Pfam PF13541 Subunit ChlI of Mg-chelatase 21 142 2.6E-44 T 29-03-2018 AM354_RS14745 25c45c103daa3bbbf265a4ba998a1378 507 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 289 303 1.6E-5 T 29-03-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 AM354_RS14745 25c45c103daa3bbbf265a4ba998a1378 507 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 317 330 1.6E-5 T 29-03-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 AM354_RS14745 25c45c103daa3bbbf265a4ba998a1378 507 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 209 224 1.6E-5 T 29-03-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 AM354_RS14745 25c45c103daa3bbbf265a4ba998a1378 507 SUPERFAMILY SSF54211 10 169 1.48E-31 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM354_RS14745 25c45c103daa3bbbf265a4ba998a1378 507 SMART SM00382 210 390 1.6E-9 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS25125 63cbe5a26121151067ce161c2ee8675c 448 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 19 442 8.1E-156 T 29-03-2018 IPR010263 Type VI secretion protein, VC_A0114 AM354_RS25125 63cbe5a26121151067ce161c2ee8675c 448 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 6 443 6.3E-144 T 29-03-2018 IPR010263 Type VI secretion protein, VC_A0114 AM354_RS16315 e816790f64bec33f3d049748f1d40d37 236 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 44 60 5.8E-9 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS16315 e816790f64bec33f3d049748f1d40d37 236 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 30 44 5.8E-9 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS16315 e816790f64bec33f3d049748f1d40d37 236 SMART SM00866 91 230 6.1E-33 T 29-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AM354_RS16315 e816790f64bec33f3d049748f1d40d37 236 SMART SM00345 11 70 9.2E-18 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS16315 e816790f64bec33f3d049748f1d40d37 236 SUPERFAMILY SSF64288 58 234 3.77E-43 T 29-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AM354_RS16315 e816790f64bec33f3d049748f1d40d37 236 Pfam PF07702 UTRA domain 91 228 1.2E-36 T 29-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AM354_RS16315 e816790f64bec33f3d049748f1d40d37 236 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 70 9.4E-18 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS16315 e816790f64bec33f3d049748f1d40d37 236 SUPERFAMILY SSF46785 5 84 3.14E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS16315 e816790f64bec33f3d049748f1d40d37 236 Gene3D G3DSA:3.40.1410.10 70 236 8.0E-35 T 29-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AM354_RS16315 e816790f64bec33f3d049748f1d40d37 236 Gene3D G3DSA:1.10.10.10 1 69 1.3E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS14855 0b231134721ff3e1cc882ae3baac0547 405 PIRSF PIRSF033271 4 405 2.5E-169 T 29-03-2018 IPR008322 Uncharacterised protein family UPF0261 AM354_RS14855 0b231134721ff3e1cc882ae3baac0547 405 Pfam PF06792 Uncharacterised protein family (UPF0261) 8 401 1.1E-148 T 29-03-2018 IPR008322 Uncharacterised protein family UPF0261 AM354_RS20040 e4ff14039205a1746fe7f9f1226138b9 441 Pfam PF00696 Amino acid kinase family 25 267 7.1E-30 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase AM354_RS20040 e4ff14039205a1746fe7f9f1226138b9 441 Gene3D G3DSA:3.40.1160.10 6 293 9.1E-52 T 29-03-2018 AM354_RS20040 e4ff14039205a1746fe7f9f1226138b9 441 SUPERFAMILY SSF53633 4 290 7.4E-69 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase AM354_RS20040 e4ff14039205a1746fe7f9f1226138b9 441 Gene3D G3DSA:3.40.630.30 296 440 1.8E-20 T 29-03-2018 AM354_RS20040 e4ff14039205a1746fe7f9f1226138b9 441 PIRSF PIRSF000423 1 441 4.2E-209 T 29-03-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 AM354_RS20040 e4ff14039205a1746fe7f9f1226138b9 441 TIGRFAM TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase 8 440 7.7E-198 T 29-03-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 AM354_RS20040 e4ff14039205a1746fe7f9f1226138b9 441 Hamap MF_01105 Amino-acid acetyltransferase [argA]. 1 441 239.15 T 29-03-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 AM354_RS20040 e4ff14039205a1746fe7f9f1226138b9 441 SUPERFAMILY SSF55729 296 419 5.15E-19 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS20040 e4ff14039205a1746fe7f9f1226138b9 441 Pfam PF00583 Acetyltransferase (GNAT) family 336 412 5.3E-7 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS20405 a42631ed4a53d47a7270071f0a0de975 139 ProSitePatterns PS00194 Thioredoxin family active site. 56 74 - T 29-03-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AM354_RS20405 a42631ed4a53d47a7270071f0a0de975 139 SUPERFAMILY SSF52833 24 138 6.37E-39 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS20405 a42631ed4a53d47a7270071f0a0de975 139 Pfam PF00085 Thioredoxin 37 137 3.1E-27 T 29-03-2018 IPR013766 Thioredoxin domain GO:0045454 AM354_RS20405 a42631ed4a53d47a7270071f0a0de975 139 Gene3D G3DSA:3.40.30.10 31 139 2.7E-35 T 29-03-2018 AM354_RS20405 a42631ed4a53d47a7270071f0a0de975 139 PIRSF PIRSF000077 35 139 5.4E-33 T 29-03-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AM354_RS20405 a42631ed4a53d47a7270071f0a0de975 139 PRINTS PR00421 Thioredoxin family signature 103 114 1.3E-8 T 29-03-2018 AM354_RS20405 a42631ed4a53d47a7270071f0a0de975 139 PRINTS PR00421 Thioredoxin family signature 55 63 1.3E-8 T 29-03-2018 AM354_RS20405 a42631ed4a53d47a7270071f0a0de975 139 PRINTS PR00421 Thioredoxin family signature 63 72 1.3E-8 T 29-03-2018 AM354_RS20405 a42631ed4a53d47a7270071f0a0de975 139 TIGRFAM TIGR01068 thioredoxin: thioredoxin 45 137 2.6E-36 T 29-03-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AM354_RS23285 2101b479aa961c2280b867ed853e4506 50 PRINTS PR00281 Hok/Gef cell toxic protein family signature 5 23 6.0E-8 T 29-03-2018 IPR000021 Hok/gef cell toxic protein GO:0016020 AM354_RS23285 2101b479aa961c2280b867ed853e4506 50 PRINTS PR00281 Hok/Gef cell toxic protein family signature 25 47 6.0E-8 T 29-03-2018 IPR000021 Hok/gef cell toxic protein GO:0016020 AM354_RS23285 2101b479aa961c2280b867ed853e4506 50 ProDom PD005979 PLASMID MEMBRANE TRANSMEMBRANE POST-SEGREGATION KILLING INHERITANCE ALTERING PERMEABILITY STABLE MAINTENANCE 1 46 2.0E-6 T 29-03-2018 IPR000021 Hok/gef cell toxic protein GO:0016020 AM354_RS23285 2101b479aa961c2280b867ed853e4506 50 Pfam PF01848 Hok/gef family 5 46 9.7E-20 T 29-03-2018 IPR000021 Hok/gef cell toxic protein GO:0016020 AM354_RS15445 c806e52d3efc534c0f243305e6fc026e 331 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 52 1.7E-16 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS15445 c806e52d3efc534c0f243305e6fc026e 331 Gene3D G3DSA:3.40.50.2300 172 331 9.4E-36 T 29-03-2018 AM354_RS15445 c806e52d3efc534c0f243305e6fc026e 331 SUPERFAMILY SSF53822 63 317 2.36E-58 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS15445 c806e52d3efc534c0f243305e6fc026e 331 SMART SM00354 5 75 5.1E-25 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS15445 c806e52d3efc534c0f243305e6fc026e 331 Gene3D G3DSA:1.10.260.40 4 60 5.8E-14 T 29-03-2018 AM354_RS15445 c806e52d3efc534c0f243305e6fc026e 331 SUPERFAMILY SSF47413 5 62 2.25E-13 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS15445 c806e52d3efc534c0f243305e6fc026e 331 ProSitePatterns PS00356 LacI-type HTH domain signature. 8 26 - T 29-03-2018 AM354_RS15445 c806e52d3efc534c0f243305e6fc026e 331 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 64 307 2.0E-29 T 29-03-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain AM354_RS15445 c806e52d3efc534c0f243305e6fc026e 331 Gene3D G3DSA:3.40.50.2300 61 171 7.4E-25 T 29-03-2018 AM354_RS03635 728568007ca8fa2e3eeeb11345abbf20 130 SMART SM01022 15 128 3.9E-38 T 29-03-2018 IPR007374 ASCH domain AM354_RS03635 728568007ca8fa2e3eeeb11345abbf20 130 Pfam PF04266 ASCH domain 26 127 6.3E-21 T 29-03-2018 IPR007374 ASCH domain AM354_RS03635 728568007ca8fa2e3eeeb11345abbf20 130 SUPERFAMILY SSF88697 3 128 1.32E-41 T 29-03-2018 IPR015947 PUA-like domain AM354_RS03635 728568007ca8fa2e3eeeb11345abbf20 130 PIRSF PIRSF021320 1 130 1.2E-39 T 29-03-2018 IPR009326 Protein of unknown function DUF984 AM354_RS03635 728568007ca8fa2e3eeeb11345abbf20 130 Gene3D G3DSA:3.10.400.10 1 130 4.0E-45 T 29-03-2018 AM354_RS25880 77cb0cd14ecb32fb40084ab84ac7f5b6 79 ProDom PD060536 YECJ YPO1738 1 79 5.0E-33 T 29-03-2018 IPR020262 Uncharacterised protein family YecJ AM354_RS25880 77cb0cd14ecb32fb40084ab84ac7f5b6 79 Pfam PF10964 Protein of unknown function (DUF2766) 1 79 2.1E-48 T 29-03-2018 IPR020262 Uncharacterised protein family YecJ AM354_RS21065 6cc1f0d35aac4abb7cb198daa4dde32c 282 Gene3D G3DSA:1.10.10.10 1 77 2.2E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS21065 6cc1f0d35aac4abb7cb198daa4dde32c 282 Pfam PF01380 SIS domain 128 257 6.2E-28 T 29-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AM354_RS21065 6cc1f0d35aac4abb7cb198daa4dde32c 282 Gene3D G3DSA:3.40.50.10490 78 281 1.4E-36 T 29-03-2018 AM354_RS21065 6cc1f0d35aac4abb7cb198daa4dde32c 282 SUPERFAMILY SSF46689 1 77 1.52E-19 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS21065 6cc1f0d35aac4abb7cb198daa4dde32c 282 SUPERFAMILY SSF53697 103 279 1.41E-38 T 29-03-2018 AM354_RS21065 6cc1f0d35aac4abb7cb198daa4dde32c 282 Pfam PF01418 Helix-turn-helix domain, rpiR family 1 76 3.9E-26 T 29-03-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 AM354_RS00465 070ed8de1e847711ce07cf74f5053b34 302 SUPERFAMILY SSF161098 100 283 7.85E-24 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS00465 070ed8de1e847711ce07cf74f5053b34 302 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 24 76 1.9E-13 T 29-03-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AM354_RS00465 070ed8de1e847711ce07cf74f5053b34 302 Gene3D G3DSA:1.10.3720.10 28 291 1.4E-38 T 29-03-2018 AM354_RS00465 070ed8de1e847711ce07cf74f5053b34 302 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 119 300 4.3E-26 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS17085 a0d62f5635c07b5a809aa725967214f1 678 Gene3D G3DSA:3.40.50.2300 528 665 9.5E-17 T 29-03-2018 AM354_RS17085 a0d62f5635c07b5a809aa725967214f1 678 Gene3D G3DSA:3.40.50.2300 260 502 2.1E-41 T 29-03-2018 AM354_RS17085 a0d62f5635c07b5a809aa725967214f1 678 SUPERFAMILY SSF53822 358 488 2.69E-78 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS17085 a0d62f5635c07b5a809aa725967214f1 678 SUPERFAMILY SSF53822 263 291 2.69E-78 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS17085 a0d62f5635c07b5a809aa725967214f1 678 SUPERFAMILY SSF53822 524 677 2.69E-78 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS17085 a0d62f5635c07b5a809aa725967214f1 678 Pfam PF04348 LppC putative lipoprotein 358 672 1.5E-90 T 29-03-2018 IPR007443 Penicillin-binding protein activator LpoA AM354_RS17085 a0d62f5635c07b5a809aa725967214f1 678 Pfam PF04348 LppC putative lipoprotein 45 290 1.4E-55 T 29-03-2018 IPR007443 Penicillin-binding protein activator LpoA AM354_RS17085 a0d62f5635c07b5a809aa725967214f1 678 Hamap MF_01890 Penicillin-binding protein activator LpoA [lpoA]. 6 672 36.645 T 29-03-2018 IPR007443 Penicillin-binding protein activator LpoA AM354_RS02240 79581df2643a946903975ae4d7ede5eb 275 Pfam PF12697 Alpha/beta hydrolase family 26 254 4.1E-24 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS02240 79581df2643a946903975ae4d7ede5eb 275 PRINTS PR00111 Alpha/beta hydrolase fold signature 49 64 7.4E-12 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS02240 79581df2643a946903975ae4d7ede5eb 275 PRINTS PR00111 Alpha/beta hydrolase fold signature 107 120 7.4E-12 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS02240 79581df2643a946903975ae4d7ede5eb 275 PRINTS PR00111 Alpha/beta hydrolase fold signature 93 106 7.4E-12 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS02240 79581df2643a946903975ae4d7ede5eb 275 SUPERFAMILY SSF53474 11 260 1.86E-63 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS02240 79581df2643a946903975ae4d7ede5eb 275 Gene3D G3DSA:3.40.50.1820 4 265 9.4E-52 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS19060 61f3d086399e0a15a86bfb88a6a47ebb 515 Pfam PF01743 Poly A polymerase head domain 111 243 3.6E-41 T 29-03-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 AM354_RS19060 61f3d086399e0a15a86bfb88a6a47ebb 515 SUPERFAMILY SSF81301 82 239 6.43E-41 T 29-03-2018 AM354_RS19060 61f3d086399e0a15a86bfb88a6a47ebb 515 SUPERFAMILY SSF81891 241 479 2.35E-49 T 29-03-2018 AM354_RS19060 61f3d086399e0a15a86bfb88a6a47ebb 515 Hamap MF_00957 Poly(A) polymerase I [pcnB]. 44 511 38.941 T 29-03-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 AM354_RS19060 61f3d086399e0a15a86bfb88a6a47ebb 515 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 270 330 2.2E-18 T 29-03-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 AM354_RS19060 61f3d086399e0a15a86bfb88a6a47ebb 515 Pfam PF12626 Polymerase A arginine-rich C-terminus 388 508 2.5E-43 T 29-03-2018 IPR025866 Polymerase A arginine-rich C-terminal domain AM354_RS19060 61f3d086399e0a15a86bfb88a6a47ebb 515 Gene3D G3DSA:3.30.460.10 77 240 9.7E-54 T 29-03-2018 AM354_RS19060 61f3d086399e0a15a86bfb88a6a47ebb 515 TIGRFAM TIGR01942 pcnB: poly(A) polymerase 80 511 3.2E-162 T 29-03-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 AM354_RS19060 61f3d086399e0a15a86bfb88a6a47ebb 515 Gene3D G3DSA:1.10.3090.10 241 487 2.3E-43 T 29-03-2018 AM354_RS16520 942c8afb04064be9b4f5b048bd97058f 397 Pfam PF00155 Aminotransferase class I and II 27 393 6.3E-84 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM354_RS16520 942c8afb04064be9b4f5b048bd97058f 397 SUPERFAMILY SSF53383 1 395 1.3E-118 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS16520 942c8afb04064be9b4f5b048bd97058f 397 PRINTS PR00799 Aspartate aminotransferase signature 274 299 2.7E-35 T 29-03-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 AM354_RS16520 942c8afb04064be9b4f5b048bd97058f 397 PRINTS PR00799 Aspartate aminotransferase signature 207 219 2.7E-35 T 29-03-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 AM354_RS16520 942c8afb04064be9b4f5b048bd97058f 397 PRINTS PR00799 Aspartate aminotransferase signature 342 360 2.7E-35 T 29-03-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 AM354_RS16520 942c8afb04064be9b4f5b048bd97058f 397 PRINTS PR00799 Aspartate aminotransferase signature 176 195 2.7E-35 T 29-03-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 AM354_RS16520 942c8afb04064be9b4f5b048bd97058f 397 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 244 257 - T 29-03-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 AM354_RS16520 942c8afb04064be9b4f5b048bd97058f 397 Gene3D G3DSA:3.90.1150.10 242 397 3.9E-49 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS16520 942c8afb04064be9b4f5b048bd97058f 397 Gene3D G3DSA:3.90.1150.10 1 158 2.7E-19 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS18905 272755bfaf7c34e4f6298293355e6d90 548 Pfam PF05683 Fumarase C-terminus 332 537 1.8E-93 T 29-03-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AM354_RS18905 272755bfaf7c34e4f6298293355e6d90 548 PIRSF PIRSF001394 30 548 2.1E-231 T 29-03-2018 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 AM354_RS18905 272755bfaf7c34e4f6298293355e6d90 548 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 372 537 1.8E-62 T 29-03-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AM354_RS18905 272755bfaf7c34e4f6298293355e6d90 548 SUPERFAMILY SSF117457 361 536 2.22E-62 T 29-03-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AM354_RS18905 272755bfaf7c34e4f6298293355e6d90 548 Pfam PF05681 Fumarate hydratase (Fumerase) 51 325 3.1E-84 T 29-03-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 AM354_RS18905 272755bfaf7c34e4f6298293355e6d90 548 Gene3D G3DSA:3.20.130.10 359 536 5.5E-68 T 29-03-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AM354_RS18905 272755bfaf7c34e4f6298293355e6d90 548 ProSitePatterns PS00163 Fumarate lyases signature. 456 465 - T 29-03-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 AM354_RS03970 931975467e2edc370d41a285e4dbd4f3 345 Gene3D G3DSA:3.90.1690.10 10 345 7.2E-59 T 29-03-2018 AM354_RS03970 931975467e2edc370d41a285e4dbd4f3 345 Pfam PF03864 Phage major capsid protein E 6 342 2.2E-61 T 29-03-2018 IPR005564 Major capsid protein GpE GO:0019028 AM354_RS06595 98a44400c2757acfeadd30b2947036fd 150 Gene3D G3DSA:1.10.10.60 2 57 3.3E-13 T 29-03-2018 AM354_RS06595 98a44400c2757acfeadd30b2947036fd 150 Gene3D G3DSA:1.10.10.60 58 120 3.2E-17 T 29-03-2018 AM354_RS06595 98a44400c2757acfeadd30b2947036fd 150 SUPERFAMILY SSF46689 5 55 1.08E-9 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS06595 98a44400c2757acfeadd30b2947036fd 150 SMART SM00342 21 104 9.6E-32 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS06595 98a44400c2757acfeadd30b2947036fd 150 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 88 104 2.2E-6 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM354_RS06595 98a44400c2757acfeadd30b2947036fd 150 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 73 88 2.2E-6 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM354_RS06595 98a44400c2757acfeadd30b2947036fd 150 SUPERFAMILY SSF46689 57 111 2.46E-14 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS06595 98a44400c2757acfeadd30b2947036fd 150 Pfam PF12833 Helix-turn-helix domain 27 105 2.8E-22 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS02535 86f8c660776fafe58d4a27f4a1e2968b 303 Gene3D G3DSA:1.10.10.10 4 94 4.3E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS02535 86f8c660776fafe58d4a27f4a1e2968b 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 6.8E-20 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS02535 86f8c660776fafe58d4a27f4a1e2968b 303 Pfam PF03466 LysR substrate binding domain 90 300 4.1E-41 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS02535 86f8c660776fafe58d4a27f4a1e2968b 303 SUPERFAMILY SSF46785 3 113 1.76E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS02535 86f8c660776fafe58d4a27f4a1e2968b 303 SUPERFAMILY SSF53850 91 302 1.41E-36 T 29-03-2018 AM354_RS02535 86f8c660776fafe58d4a27f4a1e2968b 303 Gene3D G3DSA:3.40.190.10 182 274 1.2E-24 T 29-03-2018 AM354_RS02535 86f8c660776fafe58d4a27f4a1e2968b 303 Gene3D G3DSA:3.40.190.10 95 181 6.3E-21 T 29-03-2018 AM354_RS02535 86f8c660776fafe58d4a27f4a1e2968b 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 9.8E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS02535 86f8c660776fafe58d4a27f4a1e2968b 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 9.8E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS02535 86f8c660776fafe58d4a27f4a1e2968b 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 9.8E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS15495 d178de2e61e4ef56e8294b8328399071 502 SUPERFAMILY SSF51905 312 375 1.58E-36 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS15495 d178de2e61e4ef56e8294b8328399071 502 SUPERFAMILY SSF51905 3 260 1.58E-36 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS15495 d178de2e61e4ef56e8294b8328399071 502 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 4 16 4.7E-28 T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM354_RS15495 d178de2e61e4ef56e8294b8328399071 502 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 33 45 4.7E-28 T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM354_RS15495 d178de2e61e4ef56e8294b8328399071 502 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 17 27 4.7E-28 T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM354_RS15495 d178de2e61e4ef56e8294b8328399071 502 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 347 359 4.7E-28 T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM354_RS15495 d178de2e61e4ef56e8294b8328399071 502 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 78 90 4.7E-28 T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM354_RS15495 d178de2e61e4ef56e8294b8328399071 502 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 313 319 4.7E-28 T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM354_RS15495 d178de2e61e4ef56e8294b8328399071 502 Pfam PF01266 FAD dependent oxidoreductase 5 323 4.2E-49 T 29-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AM354_RS15495 d178de2e61e4ef56e8294b8328399071 502 SUPERFAMILY SSF54373 226 319 5.89E-8 T 29-03-2018 AM354_RS15495 d178de2e61e4ef56e8294b8328399071 502 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 381 483 3.4E-11 T 29-03-2018 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM354_RS15495 d178de2e61e4ef56e8294b8328399071 502 Gene3D G3DSA:3.50.50.60 1 390 5.0E-62 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS15495 d178de2e61e4ef56e8294b8328399071 502 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 9 26 - T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM354_RS15495 d178de2e61e4ef56e8294b8328399071 502 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 352 362 - T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM354_RS18425 4184a303c110524e0e023619a52a85ec 330 TIGRFAM TIGR03756 conj_TIGR03756: integrating conjugative element protein, PFL_4710 family 33 329 1.8E-126 T 29-03-2018 IPR026331 Integrating conjugative element protein PFL_4710 AM354_RS18425 4184a303c110524e0e023619a52a85ec 330 Pfam PF06834 TraU protein 37 318 9.2E-71 T 29-03-2018 IPR009649 TraU AM354_RS05260 691db3fa928d934ee75a3661fe3e0fca 167 Pfam PF09335 SNARE associated Golgi protein 40 160 1.9E-13 T 29-03-2018 IPR032816 SNARE associated Golgi protein AM354_RS24995 965d5e74ca0ace837c92a52732f46a97 280 Hamap MF_01972 Tryptophan 2,3-dioxygenase [kynA]. 13 278 39.526 T 29-03-2018 IPR004981 Tryptophan 2,3-dioxygenase GO:0004833|GO:0019441|GO:0020037 KEGG: 00380+1.13.11.11|Reactome: R-HSA-71240 AM354_RS24995 965d5e74ca0ace837c92a52732f46a97 280 TIGRFAM TIGR03036 trp_2_3_diox: tryptophan 2,3-dioxygenase 13 278 5.0E-124 T 29-03-2018 IPR017485 Tryptophan 2,3-dioxygenase, bacterial GO:0004833|GO:0019441 KEGG: 00380+1.13.11.11 AM354_RS24995 965d5e74ca0ace837c92a52732f46a97 280 Pfam PF03301 Tryptophan 2,3-dioxygenase 204 276 2.5E-21 T 29-03-2018 IPR004981 Tryptophan 2,3-dioxygenase GO:0004833|GO:0019441|GO:0020037 KEGG: 00380+1.13.11.11|Reactome: R-HSA-71240 AM354_RS24995 965d5e74ca0ace837c92a52732f46a97 280 Pfam PF03301 Tryptophan 2,3-dioxygenase 11 141 1.4E-41 T 29-03-2018 IPR004981 Tryptophan 2,3-dioxygenase GO:0004833|GO:0019441|GO:0020037 KEGG: 00380+1.13.11.11|Reactome: R-HSA-71240 AM354_RS24995 965d5e74ca0ace837c92a52732f46a97 280 SUPERFAMILY SSF140959 19 278 2.22E-101 T 29-03-2018 AM354_RS22825 d03d4122bb61079beb08cd36ddb4365b 406 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 254 361 4.0E-31 T 29-03-2018 IPR014031 Beta-ketoacyl synthase, C-terminal AM354_RS22825 d03d4122bb61079beb08cd36ddb4365b 406 Gene3D G3DSA:3.40.47.10 4 259 3.0E-53 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS22825 d03d4122bb61079beb08cd36ddb4365b 406 Gene3D G3DSA:3.40.47.10 262 406 1.7E-41 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS22825 d03d4122bb61079beb08cd36ddb4365b 406 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 2 246 8.7E-40 T 29-03-2018 IPR014030 Beta-ketoacyl synthase, N-terminal AM354_RS22825 d03d4122bb61079beb08cd36ddb4365b 406 SUPERFAMILY SSF53901 215 403 4.53E-63 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS22825 d03d4122bb61079beb08cd36ddb4365b 406 SMART SM00825 Beta-ketoacyl synthase 4 406 6.4E-13 T 29-03-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AM354_RS22825 d03d4122bb61079beb08cd36ddb4365b 406 SUPERFAMILY SSF53901 1 253 7.78E-64 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS22825 d03d4122bb61079beb08cd36ddb4365b 406 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 154 170 - T 29-03-2018 IPR018201 Beta-ketoacyl synthase, active site AM354_RS12035 402fa988f18c8d25504047927e9e8aa9 209 SUPERFAMILY SSF53335 31 207 4.1E-42 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS12035 402fa988f18c8d25504047927e9e8aa9 209 Pfam PF01728 FtsJ-like methyltransferase 31 206 4.7E-57 T 29-03-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 AM354_RS12035 402fa988f18c8d25504047927e9e8aa9 209 Gene3D G3DSA:3.40.50.150 1 209 3.2E-58 T 29-03-2018 AM354_RS12035 402fa988f18c8d25504047927e9e8aa9 209 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 15 208 27.803 T 29-03-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 AM354_RS12035 402fa988f18c8d25504047927e9e8aa9 209 TIGRFAM TIGR00438 rrmJ: ribosomal RNA large subunit methyltransferase J 20 206 6.0E-96 T 29-03-2018 IPR004512 Ribosomal RNA methyltransferase E, gammaproteobacteria GO:0006364|GO:0016436 KEGG: 00564+2.1.1.16 AM354_RS12035 402fa988f18c8d25504047927e9e8aa9 209 PIRSF PIRSF005461 1 209 1.1E-82 T 29-03-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 AM354_RS07415 6845285feff51b854b34e5807fcfab98 307 Gene3D G3DSA:3.20.20.70 198 296 0.041 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS07415 6845285feff51b854b34e5807fcfab98 307 SUPERFAMILY SSF51395 18 278 1.76E-6 T 29-03-2018 AM354_RS07415 6845285feff51b854b34e5807fcfab98 307 Gene3D G3DSA:3.20.20.70 23 197 2.6E-9 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS15455 d9a0b17a62af10bf5027bd55a4c9bb76 175 Gene3D G3DSA:3.40.50.300 5 175 1.6E-27 T 29-03-2018 AM354_RS15455 d9a0b17a62af10bf5027bd55a4c9bb76 175 SUPERFAMILY SSF52540 1 169 1.46E-25 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS15455 d9a0b17a62af10bf5027bd55a4c9bb76 175 TIGRFAM TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family 9 169 1.8E-63 T 29-03-2018 IPR006001 Carbohydrate kinase, thermoresistant glucokinase GO:0005975|GO:0016301 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530 AM354_RS15455 d9a0b17a62af10bf5027bd55a4c9bb76 175 Pfam PF13671 AAA domain 8 125 2.8E-8 T 29-03-2018 AM354_RS07400 8db87121e439bceb4e982f988c16e5bd 349 Gene3D G3DSA:3.40.50.1980 187 347 4.5E-42 T 29-03-2018 AM354_RS07400 8db87121e439bceb4e982f988c16e5bd 349 Pfam PF01497 Periplasmic binding protein 55 295 3.0E-28 T 29-03-2018 IPR002491 ABC transporter periplasmic binding domain GO:0005488 AM354_RS07400 8db87121e439bceb4e982f988c16e5bd 349 SUPERFAMILY SSF53807 23 323 7.85E-55 T 29-03-2018 AM354_RS07400 8db87121e439bceb4e982f988c16e5bd 349 Gene3D G3DSA:3.40.50.1980 39 185 8.8E-22 T 29-03-2018 AM354_RS00095 b0c6fb0b12c6b55db305888003696860 293 Gene3D G3DSA:3.80.10.10 104 192 2.2E-27 T 29-03-2018 IPR032675 Leucine-rich repeat domain, L domain-like AM354_RS00095 b0c6fb0b12c6b55db305888003696860 293 SMART SM00364 215 234 0.45 T 29-03-2018 AM354_RS00095 b0c6fb0b12c6b55db305888003696860 293 SMART SM00364 56 73 620.0 T 29-03-2018 AM354_RS00095 b0c6fb0b12c6b55db305888003696860 293 SMART SM00364 192 211 57.0 T 29-03-2018 AM354_RS00095 b0c6fb0b12c6b55db305888003696860 293 SMART SM00364 169 188 60.0 T 29-03-2018 AM354_RS00095 b0c6fb0b12c6b55db305888003696860 293 SMART SM00364 100 119 80.0 T 29-03-2018 AM354_RS00095 b0c6fb0b12c6b55db305888003696860 293 SMART SM00364 146 165 40.0 T 29-03-2018 AM354_RS00095 b0c6fb0b12c6b55db305888003696860 293 SMART SM00364 123 142 8.7 T 29-03-2018 AM354_RS00095 b0c6fb0b12c6b55db305888003696860 293 SMART SM00364 31 50 160.0 T 29-03-2018 AM354_RS00095 b0c6fb0b12c6b55db305888003696860 293 SMART SM00364 238 257 30.0 T 29-03-2018 AM354_RS00095 b0c6fb0b12c6b55db305888003696860 293 Pfam PF13855 Leucine rich repeat 55 112 5.7E-11 T 29-03-2018 IPR001611 Leucine-rich repeat GO:0005515 AM354_RS00095 b0c6fb0b12c6b55db305888003696860 293 Pfam PF13855 Leucine rich repeat 171 228 2.6E-10 T 29-03-2018 IPR001611 Leucine-rich repeat GO:0005515 AM354_RS00095 b0c6fb0b12c6b55db305888003696860 293 Gene3D G3DSA:3.80.10.10 4 103 1.2E-22 T 29-03-2018 IPR032675 Leucine-rich repeat domain, L domain-like AM354_RS00095 b0c6fb0b12c6b55db305888003696860 293 SUPERFAMILY SSF52058 14 278 7.14E-60 T 29-03-2018 IPR032675 Leucine-rich repeat domain, L domain-like AM354_RS00095 b0c6fb0b12c6b55db305888003696860 293 SMART SM00369 32 54 7.4 T 29-03-2018 IPR003591 Leucine-rich repeat, typical subtype AM354_RS00095 b0c6fb0b12c6b55db305888003696860 293 SMART SM00369 238 261 0.0096 T 29-03-2018 IPR003591 Leucine-rich repeat, typical subtype AM354_RS00095 b0c6fb0b12c6b55db305888003696860 293 SMART SM00369 215 236 0.63 T 29-03-2018 IPR003591 Leucine-rich repeat, typical subtype AM354_RS00095 b0c6fb0b12c6b55db305888003696860 293 SMART SM00369 100 123 1.4 T 29-03-2018 IPR003591 Leucine-rich repeat, typical subtype AM354_RS00095 b0c6fb0b12c6b55db305888003696860 293 SMART SM00369 55 77 8.1 T 29-03-2018 IPR003591 Leucine-rich repeat, typical subtype AM354_RS00095 b0c6fb0b12c6b55db305888003696860 293 SMART SM00369 146 169 0.086 T 29-03-2018 IPR003591 Leucine-rich repeat, typical subtype AM354_RS00095 b0c6fb0b12c6b55db305888003696860 293 SMART SM00369 192 214 8.4 T 29-03-2018 IPR003591 Leucine-rich repeat, typical subtype AM354_RS00095 b0c6fb0b12c6b55db305888003696860 293 Gene3D G3DSA:3.80.10.10 193 286 2.3E-26 T 29-03-2018 IPR032675 Leucine-rich repeat domain, L domain-like AM354_RS00095 b0c6fb0b12c6b55db305888003696860 293 Pfam PF13516 Leucine Rich repeat 262 275 0.74 T 29-03-2018 IPR001611 Leucine-rich repeat GO:0005515 AM354_RS15025 81e550dd20cd57567ad13ce5e04d84f2 357 Pfam PF04865 Baseplate J-like protein 66 321 2.9E-61 T 29-03-2018 IPR006949 Baseplate protein J-like AM354_RS01565 c1c570ded25bd4c2fd89cdac2f1ff638 408 Gene3D G3DSA:3.40.630.10 1 247 7.6E-42 T 29-03-2018 AM354_RS01565 c1c570ded25bd4c2fd89cdac2f1ff638 408 PIRSF PIRSF001235 2 408 6.9E-128 T 29-03-2018 IPR010158 Amidase, carbamoylase-type GO:0008152|GO:0016813 AM354_RS01565 c1c570ded25bd4c2fd89cdac2f1ff638 408 Gene3D G3DSA:3.40.630.10 248 408 1.6E-21 T 29-03-2018 AM354_RS01565 c1c570ded25bd4c2fd89cdac2f1ff638 408 Pfam PF01546 Peptidase family M20/M25/M40 79 403 2.8E-35 T 29-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AM354_RS01565 c1c570ded25bd4c2fd89cdac2f1ff638 408 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 8 404 9.5E-123 T 29-03-2018 IPR010158 Amidase, carbamoylase-type GO:0008152|GO:0016813 AM354_RS01565 c1c570ded25bd4c2fd89cdac2f1ff638 408 SUPERFAMILY SSF53187 333 406 1.14E-92 T 29-03-2018 AM354_RS01565 c1c570ded25bd4c2fd89cdac2f1ff638 408 SUPERFAMILY SSF53187 3 221 1.14E-92 T 29-03-2018 AM354_RS01565 c1c570ded25bd4c2fd89cdac2f1ff638 408 SUPERFAMILY SSF55031 211 326 8.52E-28 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain AM354_RS13520 2e8be0fadcb4ac95512bb36dedf71b85 141 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 7 140 1.5E-55 T 29-03-2018 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 AM354_RS13520 2e8be0fadcb4ac95512bb36dedf71b85 141 Gene3D G3DSA:2.20.25.10 1 42 1.2E-19 T 29-03-2018 AM354_RS13520 2e8be0fadcb4ac95512bb36dedf71b85 141 Gene3D G3DSA:3.30.300.20 48 141 5.7E-23 T 29-03-2018 IPR015946 K homology domain-like, alpha/beta AM354_RS13520 2e8be0fadcb4ac95512bb36dedf71b85 141 Pfam PF02566 OsmC-like protein 44 138 6.3E-16 T 29-03-2018 IPR003718 OsmC/Ohr family AM354_RS13520 2e8be0fadcb4ac95512bb36dedf71b85 141 SUPERFAMILY SSF82784 1 140 3.14E-43 T 29-03-2018 IPR003718 OsmC/Ohr family AM354_RS20975 b65f63b3283a1d46574e8eb8fed6404b 320 Gene3D G3DSA:3.40.50.1820 58 295 1.4E-16 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS20975 b65f63b3283a1d46574e8eb8fed6404b 320 Pfam PF11187 Protein of unknown function (DUF2974) 130 207 1.4E-4 T 29-03-2018 IPR024499 Protein of unknown function DUF2974 AM354_RS20975 b65f63b3283a1d46574e8eb8fed6404b 320 SUPERFAMILY SSF53474 85 257 2.17E-19 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS07020 6f51c5a97a9cd67bc58f64b6276b7858 311 Gene3D G3DSA:3.10.580.10 275 309 5.3E-6 T 29-03-2018 AM354_RS07020 6f51c5a97a9cd67bc58f64b6276b7858 311 Gene3D G3DSA:3.40.50.300 1 274 9.4E-75 T 29-03-2018 AM354_RS07020 6f51c5a97a9cd67bc58f64b6276b7858 311 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS07020 6f51c5a97a9cd67bc58f64b6276b7858 311 SUPERFAMILY SSF54631 266 305 2.36E-6 T 29-03-2018 AM354_RS07020 6f51c5a97a9cd67bc58f64b6276b7858 311 SMART SM00382 26 213 4.4E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS07020 6f51c5a97a9cd67bc58f64b6276b7858 311 SUPERFAMILY SSF52540 1 240 6.92E-76 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS07020 6f51c5a97a9cd67bc58f64b6276b7858 311 Pfam PF00005 ABC transporter 18 163 2.9E-31 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS17020 39a06e606b6a76182f0c85e52ec5ac8d 166 SUPERFAMILY SSF101738 3 116 8.89E-50 T 29-03-2018 IPR007481 Stringent starvation protein B AM354_RS17020 39a06e606b6a76182f0c85e52ec5ac8d 166 Pfam PF04386 Stringent starvation protein B 9 166 7.0E-42 T 29-03-2018 IPR007481 Stringent starvation protein B AM354_RS17020 39a06e606b6a76182f0c85e52ec5ac8d 166 PIRSF PIRSF005276 3 166 4.4E-61 T 29-03-2018 IPR007481 Stringent starvation protein B AM354_RS17020 39a06e606b6a76182f0c85e52ec5ac8d 166 Gene3D G3DSA:2.30.30.220 10 107 3.6E-42 T 29-03-2018 IPR007481 Stringent starvation protein B AM354_RS14200 9b2d0a2887cae80c128cffe35cd84656 469 SUPERFAMILY SSF55931 102 468 2.26E-136 T 29-03-2018 AM354_RS14200 9b2d0a2887cae80c128cffe35cd84656 469 Gene3D G3DSA:3.30.590.10 105 457 3.3E-121 T 29-03-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 AM354_RS14200 9b2d0a2887cae80c128cffe35cd84656 469 SMART SM01230 102 379 5.8E-147 T 29-03-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AM354_RS14200 9b2d0a2887cae80c128cffe35cd84656 469 SUPERFAMILY SSF54368 3 100 3.4E-37 T 29-03-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AM354_RS14200 9b2d0a2887cae80c128cffe35cd84656 469 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 14 95 5.8E-32 T 29-03-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AM354_RS14200 9b2d0a2887cae80c128cffe35cd84656 469 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 259 274 - T 29-03-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 AM354_RS14200 9b2d0a2887cae80c128cffe35cd84656 469 ProSitePatterns PS00180 Glutamine synthetase signature 1. 50 68 - T 29-03-2018 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 AM354_RS14200 9b2d0a2887cae80c128cffe35cd84656 469 Pfam PF00120 Glutamine synthetase, catalytic domain 103 466 2.9E-136 T 29-03-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AM354_RS14200 9b2d0a2887cae80c128cffe35cd84656 469 Gene3D G3DSA:3.10.20.70 2 104 4.3E-29 T 29-03-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AM354_RS14200 9b2d0a2887cae80c128cffe35cd84656 469 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 4 468 4.7E-214 T 29-03-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AM354_RS14200 9b2d0a2887cae80c128cffe35cd84656 469 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 386 398 - T 29-03-2018 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AM354_RS20595 d5c5cddb3d1f54522b69293f47c81898 92 Gene3D G3DSA:3.40.630.30 2 92 7.0E-15 T 29-03-2018 AM354_RS20595 d5c5cddb3d1f54522b69293f47c81898 92 Pfam PF14542 GCN5-related N-acetyl-transferase 11 90 5.4E-22 T 29-03-2018 IPR031165 Yjdj-type Gcn5-related N-acetyltransferase AM354_RS20595 d5c5cddb3d1f54522b69293f47c81898 92 SUPERFAMILY SSF55729 7 90 7.39E-24 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS20425 8f7309b7489499c59ae140653e1b0702 483 Pfam PF02321 Outer membrane efflux protein 64 257 3.6E-27 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 AM354_RS20425 8f7309b7489499c59ae140653e1b0702 483 Pfam PF02321 Outer membrane efflux protein 290 470 1.6E-17 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 AM354_RS20425 8f7309b7489499c59ae140653e1b0702 483 Gene3D G3DSA:1.20.1600.10 23 478 7.7E-80 T 29-03-2018 AM354_RS20425 8f7309b7489499c59ae140653e1b0702 483 SUPERFAMILY SSF56954 5 474 1.05E-91 T 29-03-2018 AM354_RS20425 8f7309b7489499c59ae140653e1b0702 483 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 13 472 4.9E-103 T 29-03-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 AM354_RS05790 55144ec23368b5767f554cb5bf0c9576 648 SMART SM00382 33 220 1.1E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS05790 55144ec23368b5767f554cb5bf0c9576 648 Pfam PF12704 MacB-like periplasmic core domain 272 491 1.9E-38 T 29-03-2018 IPR025857 MacB-like periplasmic core domain AM354_RS05790 55144ec23368b5767f554cb5bf0c9576 648 SUPERFAMILY SSF52540 4 228 1.43E-68 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS05790 55144ec23368b5767f554cb5bf0c9576 648 Pfam PF00005 ABC transporter 24 172 2.0E-30 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS05790 55144ec23368b5767f554cb5bf0c9576 648 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS05790 55144ec23368b5767f554cb5bf0c9576 648 Gene3D G3DSA:3.40.50.300 1 261 6.5E-66 T 29-03-2018 AM354_RS05790 55144ec23368b5767f554cb5bf0c9576 648 Pfam PF02687 FtsX-like permease family 553 641 6.2E-11 T 29-03-2018 IPR003838 ABC transporter permease protein domain GO:0016020 AM354_RS04520 ff38b777be22ae5797979b635acb2f1f 396 SUPERFAMILY SSF51905 1 283 8.2E-47 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS04520 ff38b777be22ae5797979b635acb2f1f 396 Pfam PF01266 FAD dependent oxidoreductase 3 390 1.6E-58 T 29-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AM354_RS04520 ff38b777be22ae5797979b635acb2f1f 396 Gene3D G3DSA:3.30.9.10 160 347 8.9E-29 T 29-03-2018 AM354_RS04520 ff38b777be22ae5797979b635acb2f1f 396 Gene3D G3DSA:3.30.9.10 86 159 8.8E-9 T 29-03-2018 AM354_RS10875 8875006ee5162fdd45730860ffd415f5 388 TIGRFAM TIGR00773 NhaA: Na+/H+ antiporter NhaA 8 380 2.6E-171 T 29-03-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 AM354_RS10875 8875006ee5162fdd45730860ffd415f5 388 Pfam PF06965 Na+/H+ antiporter 1 7 379 7.8E-149 T 29-03-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 AM354_RS10875 8875006ee5162fdd45730860ffd415f5 388 Gene3D G3DSA:1.20.1530.10 3 386 2.6E-150 T 29-03-2018 IPR023171 Na/H antiporter domain AM354_RS10875 8875006ee5162fdd45730860ffd415f5 388 Hamap MF_01844 Na(+)/H(+) antiporter NhaA [nhaA]. 5 386 23.526 T 29-03-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 AM354_RS06805 f369ca1b81c9ec2b86f057a7a45587f0 155 TIGRFAM TIGR00022 TIGR00022: YhcH/YjgK/YiaL family protein 2 152 2.0E-35 T 29-03-2018 IPR004375 YhcH/YjgK/YiaL family AM354_RS06805 f369ca1b81c9ec2b86f057a7a45587f0 155 SUPERFAMILY SSF51197 2 153 8.51E-33 T 29-03-2018 AM354_RS06805 f369ca1b81c9ec2b86f057a7a45587f0 155 Gene3D G3DSA:2.60.120.370 2 154 9.6E-36 T 29-03-2018 IPR004375 YhcH/YjgK/YiaL family AM354_RS06805 f369ca1b81c9ec2b86f057a7a45587f0 155 Pfam PF04074 Domain of unknown function (DUF386) 15 150 1.7E-31 T 29-03-2018 IPR004375 YhcH/YjgK/YiaL family AM354_RS04945 1abf2fa00a112c0a6014fca12977fb57 306 PIRSF PIRSF026649 2 306 1.3E-100 T 29-03-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 AM354_RS04945 1abf2fa00a112c0a6014fca12977fb57 306 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 5 297 7.0E-106 T 29-03-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 AM354_RS04945 1abf2fa00a112c0a6014fca12977fb57 306 TIGRFAM TIGR02207 lipid_A_htrB: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 5 306 1.4E-145 T 29-03-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 KEGG: 00600+2.3.1.24 AM354_RS04945 1abf2fa00a112c0a6014fca12977fb57 306 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 4 306 52.987 T 29-03-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 KEGG: 00600+2.3.1.24 AM354_RS19565 7f46e93520eb882f22ffcef6f8632f11 223 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 134 156 - T 29-03-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AM354_RS19565 7f46e93520eb882f22ffcef6f8632f11 223 SUPERFAMILY SSF51366 3 218 8.9E-55 T 29-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 AM354_RS19565 7f46e93520eb882f22ffcef6f8632f11 223 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 31 45 - T 29-03-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AM354_RS19565 7f46e93520eb882f22ffcef6f8632f11 223 Gene3D G3DSA:3.20.20.70 1 220 8.7E-61 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS19565 7f46e93520eb882f22ffcef6f8632f11 223 Pfam PF00834 Ribulose-phosphate 3 epimerase family 5 199 1.5E-61 T 29-03-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AM354_RS19255 01eaba5fbe53579abb290deb78058237 356 SMART SM00382 28 217 2.8E-16 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS19255 01eaba5fbe53579abb290deb78058237 356 SUPERFAMILY SSF52540 4 247 2.47E-81 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS19255 01eaba5fbe53579abb290deb78058237 356 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS19255 01eaba5fbe53579abb290deb78058237 356 Pfam PF00005 ABC transporter 19 167 1.2E-35 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS19255 01eaba5fbe53579abb290deb78058237 356 Gene3D G3DSA:3.40.50.300 2 251 2.4E-73 T 29-03-2018 AM354_RS19255 01eaba5fbe53579abb290deb78058237 356 SUPERFAMILY SSF50331 243 339 1.28E-6 T 29-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal AM354_RS23995 79d1cd076972b22945df77401a3c8541 238 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS23995 79d1cd076972b22945df77401a3c8541 238 Gene3D G3DSA:3.40.50.300 2 237 2.2E-56 T 29-03-2018 AM354_RS23995 79d1cd076972b22945df77401a3c8541 238 SMART SM00382 30 216 3.7E-7 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS23995 79d1cd076972b22945df77401a3c8541 238 SUPERFAMILY SSF52540 4 235 7.14E-62 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS23995 79d1cd076972b22945df77401a3c8541 238 Pfam PF00005 ABC transporter 21 165 9.1E-31 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS21960 f55e86c5fb75b42d797491c3408a24fc 208 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 2 208 44.253 T 29-03-2018 IPR034332 Uracil phosphoribosyltransferase, bacterial-type KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 AM354_RS21960 f55e86c5fb75b42d797491c3408a24fc 208 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 3 208 7.1E-91 T 29-03-2018 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 AM354_RS21960 f55e86c5fb75b42d797491c3408a24fc 208 Pfam PF14681 Uracil phosphoribosyltransferase 7 207 1.2E-64 T 29-03-2018 AM354_RS21960 f55e86c5fb75b42d797491c3408a24fc 208 SUPERFAMILY SSF53271 4 206 1.06E-66 T 29-03-2018 IPR029057 Phosphoribosyltransferase-like AM354_RS21960 f55e86c5fb75b42d797491c3408a24fc 208 Gene3D G3DSA:3.40.50.2020 1 206 4.3E-60 T 29-03-2018 AM354_RS04860 b24d832adae7c9ae010abf85128be9aa 319 SMART SM00363 20 79 8.6E-7 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM354_RS04860 b24d832adae7c9ae010abf85128be9aa 319 Gene3D G3DSA:3.30.2350.10 92 317 3.8E-66 T 29-03-2018 AM354_RS04860 b24d832adae7c9ae010abf85128be9aa 319 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 140 154 - T 29-03-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS04860 b24d832adae7c9ae010abf85128be9aa 319 Pfam PF00849 RNA pseudouridylate synthase 101 248 1.0E-28 T 29-03-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS04860 b24d832adae7c9ae010abf85128be9aa 319 Pfam PF01479 S4 domain 20 66 1.5E-8 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM354_RS04860 b24d832adae7c9ae010abf85128be9aa 319 SUPERFAMILY SSF55174 19 70 3.68E-8 T 29-03-2018 AM354_RS04860 b24d832adae7c9ae010abf85128be9aa 319 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 16 314 1.3E-94 T 29-03-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS04860 b24d832adae7c9ae010abf85128be9aa 319 Gene3D G3DSA:3.10.290.10 8 79 1.7E-13 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM354_RS04860 b24d832adae7c9ae010abf85128be9aa 319 SUPERFAMILY SSF55120 95 314 1.02E-64 T 29-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS03080 c3283f5e9f81a61c822d6480dad72ac2 545 Gene3D G3DSA:3.40.720.10 248 539 8.9E-24 T 29-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 AM354_RS03080 c3283f5e9f81a61c822d6480dad72ac2 545 Pfam PF08019 Domain of unknown function (DUF1705) 56 208 8.9E-51 T 29-03-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 AM354_RS03080 c3283f5e9f81a61c822d6480dad72ac2 545 Pfam PF00884 Sulfatase 237 525 1.9E-45 T 29-03-2018 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 AM354_RS03080 c3283f5e9f81a61c822d6480dad72ac2 545 SUPERFAMILY SSF53649 237 530 6.4E-24 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AM354_RS11335 fdbfb40559a879d04988e7bbaef17f43 121 SUPERFAMILY SSF51182 26 116 1.27E-15 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS11335 fdbfb40559a879d04988e7bbaef17f43 121 Gene3D G3DSA:2.60.120.10 22 121 1.9E-10 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS11335 fdbfb40559a879d04988e7bbaef17f43 121 Pfam PF05899 Protein of unknown function (DUF861) 42 115 1.2E-15 T 29-03-2018 IPR008579 Domain of unknown function DUF861, cupin-3 KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 AM354_RS05915 b386da8666e126b09af3163b57169fdd 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 79 269 1.0E-14 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS05915 b386da8666e126b09af3163b57169fdd 281 SUPERFAMILY SSF161098 8 268 6.28E-52 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS05915 b386da8666e126b09af3163b57169fdd 281 Gene3D G3DSA:1.10.3720.10 11 273 7.0E-41 T 29-03-2018 AM354_RS06660 2742ec0f1cdca0f1c1a4b45e4feb7d8b 96 TIGRFAM TIGR02953 penta_MxKDx: pentapeptide MXKDX repeat protein 49 94 3.0E-13 T 29-03-2018 IPR014299 Pentapeptide MXKDX repeat protein AM354_RS06660 2742ec0f1cdca0f1c1a4b45e4feb7d8b 96 TIGRFAM TIGR02953 penta_MxKDx: pentapeptide MXKDX repeat protein 4 74 9.8E-16 T 29-03-2018 IPR014299 Pentapeptide MXKDX repeat protein AM354_RS13445 b25d67250a18c06144c220bae4450015 522 Pfam PF10995 GGDEF I-site like or GIL domain 160 472 4.7E-125 T 29-03-2018 IPR017745 Cellulose biosynthesis protein BcsE AM354_RS13445 b25d67250a18c06144c220bae4450015 522 TIGRFAM TIGR03369 cellulose_bcsE: cellulose biosynthesis protein BcsE 156 472 6.9E-102 T 29-03-2018 IPR017745 Cellulose biosynthesis protein BcsE AM354_RS13445 b25d67250a18c06144c220bae4450015 522 Gene3D G3DSA:3.40.50.300 36 481 0.0014 T 29-03-2018 AM354_RS02250 eefd963c40100d7090049dbbfe3e16c7 225 Pfam PF07729 FCD domain 88 211 6.9E-18 T 29-03-2018 IPR011711 GntR, C-terminal AM354_RS02250 eefd963c40100d7090049dbbfe3e16c7 225 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 52 68 2.3E-6 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS02250 eefd963c40100d7090049dbbfe3e16c7 225 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 38 52 2.3E-6 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS02250 eefd963c40100d7090049dbbfe3e16c7 225 Gene3D G3DSA:1.20.120.530 75 225 2.6E-21 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM354_RS02250 eefd963c40100d7090049dbbfe3e16c7 225 SMART SM00895 88 212 1.8E-11 T 29-03-2018 IPR011711 GntR, C-terminal AM354_RS02250 eefd963c40100d7090049dbbfe3e16c7 225 SUPERFAMILY SSF48008 87 216 2.59E-18 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM354_RS02250 eefd963c40100d7090049dbbfe3e16c7 225 SUPERFAMILY SSF46785 13 85 2.41E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS02250 eefd963c40100d7090049dbbfe3e16c7 225 SMART SM00345 20 78 4.8E-17 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS02250 eefd963c40100d7090049dbbfe3e16c7 225 Pfam PF00392 Bacterial regulatory proteins, gntR family 21 75 3.9E-16 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS02250 eefd963c40100d7090049dbbfe3e16c7 225 Gene3D G3DSA:1.10.10.10 2 74 4.0E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS26045 0e8ec70a64a155e24d5631493ef6edf8 546 SUPERFAMILY SSF56112 98 159 6.12E-26 T 29-03-2018 IPR011009 Protein kinase-like domain AM354_RS26045 0e8ec70a64a155e24d5631493ef6edf8 546 SUPERFAMILY SSF56112 194 427 6.12E-26 T 29-03-2018 IPR011009 Protein kinase-like domain AM354_RS26045 0e8ec70a64a155e24d5631493ef6edf8 546 Pfam PF03109 ABC1 family 114 232 8.5E-34 T 29-03-2018 IPR004147 UbiB domain AM354_RS26045 0e8ec70a64a155e24d5631493ef6edf8 546 Gene3D G3DSA:1.10.510.10 252 332 6.2E-4 T 29-03-2018 AM354_RS26045 0e8ec70a64a155e24d5631493ef6edf8 546 Gene3D G3DSA:3.30.200.20 104 245 1.9E-20 T 29-03-2018 AM354_RS09505 a353fb4c512276927435842379263095 208 Pfam PF00857 Isochorismatase family 14 165 7.2E-23 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM354_RS09505 a353fb4c512276927435842379263095 208 SUPERFAMILY SSF52499 5 202 4.06E-53 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM354_RS09505 a353fb4c512276927435842379263095 208 Gene3D G3DSA:3.40.50.850 1 208 4.2E-44 T 29-03-2018 AM354_RS15530 cb94562db7c48dc895d1ac6b75dcd2c2 101 SUPERFAMILY SSF52794 3 92 7.06E-16 T 29-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AM354_RS15530 cb94562db7c48dc895d1ac6b75dcd2c2 101 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 4 80 2.3E-13 T 29-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AM354_RS15530 cb94562db7c48dc895d1ac6b75dcd2c2 101 Gene3D G3DSA:3.40.50.2300 1 97 2.4E-16 T 29-03-2018 AM354_RS24700 cfa7e7d765e2600844f6276f8d1a06fc 252 SUPERFAMILY SSF47240 6 246 3.37E-80 T 29-03-2018 IPR009078 Ferritin-like superfamily AM354_RS24700 cfa7e7d765e2600844f6276f8d1a06fc 252 PIRSF PIRSF037834 1 252 2.1E-94 T 29-03-2018 IPR011882 1,2-phenylacetyl-CoA epoxidase, subunit C GO:0010124 AM354_RS24700 cfa7e7d765e2600844f6276f8d1a06fc 252 Gene3D G3DSA:1.20.1260.10 5 252 7.6E-71 T 29-03-2018 IPR012347 Ferritin-related AM354_RS24700 cfa7e7d765e2600844f6276f8d1a06fc 252 TIGRFAM TIGR02158 PA_CoA_Oxy3: phenylacetate-CoA oxygenase, PaaI subunit 15 252 3.6E-93 T 29-03-2018 IPR011882 1,2-phenylacetyl-CoA epoxidase, subunit C GO:0010124 AM354_RS24700 cfa7e7d765e2600844f6276f8d1a06fc 252 Pfam PF05138 Phenylacetic acid catabolic protein 5 252 1.6E-94 T 29-03-2018 IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C GO:0010124 AM354_RS08345 1d912ab48d06d01de183ecd35fe40a5d 344 SUPERFAMILY SSF52540 1 210 3.11E-53 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS08345 1d912ab48d06d01de183ecd35fe40a5d 344 Pfam PF06144 DNA polymerase III, delta subunit 21 190 2.9E-41 T 29-03-2018 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 AM354_RS08345 1d912ab48d06d01de183ecd35fe40a5d 344 Gene3D G3DSA:3.40.50.300 1 140 5.8E-21 T 29-03-2018 AM354_RS08345 1d912ab48d06d01de183ecd35fe40a5d 344 Gene3D G3DSA:1.10.8.60 143 222 6.0E-23 T 29-03-2018 AM354_RS08345 1d912ab48d06d01de183ecd35fe40a5d 344 Gene3D G3DSA:1.20.272.10 223 343 6.7E-28 T 29-03-2018 AM354_RS08345 1d912ab48d06d01de183ecd35fe40a5d 344 Pfam PF14840 Processivity clamp loader gamma complex DNA pol III C-term 214 337 6.2E-65 T 29-03-2018 IPR032780 DNA polymerase III subunit delta, C-terminal KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS08345 1d912ab48d06d01de183ecd35fe40a5d 344 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 18 332 1.7E-103 T 29-03-2018 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 AM354_RS08345 1d912ab48d06d01de183ecd35fe40a5d 344 SUPERFAMILY SSF48019 212 335 1.25E-37 T 29-03-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 AM354_RS19595 16dd7bc49b7b8b7d344ce3d6873e5536 330 Hamap MF_01175 tRNA-modifying protein YgfZ [ygfZ]. 1 323 49.614 T 29-03-2018 IPR023758 tRNA-modifying protein YgfZ GO:0005542|GO:0009451 AM354_RS19595 16dd7bc49b7b8b7d344ce3d6873e5536 330 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 189 253 3.8E-25 T 29-03-2018 IPR017703 YgfZ/GcvT conserved site AM354_RS19595 16dd7bc49b7b8b7d344ce3d6873e5536 330 Pfam PF01571 Aminomethyltransferase folate-binding domain 32 136 4.0E-7 T 29-03-2018 IPR006222 Glycine cleavage T-protein-like, N-terminal AM354_RS19595 16dd7bc49b7b8b7d344ce3d6873e5536 330 SUPERFAMILY SSF103025 12 243 5.02E-62 T 29-03-2018 AM354_RS19595 16dd7bc49b7b8b7d344ce3d6873e5536 330 Gene3D G3DSA:3.30.70.1400 28 241 4.3E-24 T 29-03-2018 AM354_RS19595 16dd7bc49b7b8b7d344ce3d6873e5536 330 PIRSF PIRSF006487 20 329 2.4E-8 T 29-03-2018 AM354_RS19595 16dd7bc49b7b8b7d344ce3d6873e5536 330 SUPERFAMILY SSF101790 245 326 7.85E-24 T 29-03-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain AM354_RS25885 23f29f72edf4ec8f2ca903574362a2e7 77 Pfam PF13996 YobH-like protein 4 71 2.4E-35 T 29-03-2018 IPR025611 YobH-like protein AM354_RS18870 f97f3054a0395c88305ac6496a84cf97 340 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 194 208 - T 29-03-2018 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 AM354_RS18870 f97f3054a0395c88305ac6496a84cf97 340 Gene3D G3DSA:3.40.50.300 275 335 7.1E-8 T 29-03-2018 AM354_RS18870 f97f3054a0395c88305ac6496a84cf97 340 Gene3D G3DSA:3.40.50.300 121 274 6.7E-25 T 29-03-2018 AM354_RS18870 f97f3054a0395c88305ac6496a84cf97 340 Pfam PF00437 Type II/IV secretion system protein 12 272 5.2E-41 T 29-03-2018 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 AM354_RS18870 f97f3054a0395c88305ac6496a84cf97 340 SUPERFAMILY SSF52540 3 329 3.51E-61 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS18870 f97f3054a0395c88305ac6496a84cf97 340 SMART SM00382 123 248 0.0038 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS18870 f97f3054a0395c88305ac6496a84cf97 340 Gene3D G3DSA:3.30.450.90 1 101 1.4E-18 T 29-03-2018 AM354_RS18870 f97f3054a0395c88305ac6496a84cf97 340 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 332 2.8E-133 T 29-03-2018 IPR006321 Pilus retraction protein PilT GO:0005524|GO:0006810 AM354_RS00845 290c1bd90685b1de8d7cbb992fa0623a 520 PIRSF PIRSF001373 1 520 1.5E-250 T 29-03-2018 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AM354_RS00845 290c1bd90685b1de8d7cbb992fa0623a 520 Pfam PF00425 chorismate binding enzyme 242 502 1.1E-84 T 29-03-2018 IPR015890 Chorismate-utilising enzyme, C-terminal AM354_RS00845 290c1bd90685b1de8d7cbb992fa0623a 520 SUPERFAMILY SSF56322 8 515 6.8E-166 T 29-03-2018 IPR005801 ADC synthase GO:0009058 AM354_RS00845 290c1bd90685b1de8d7cbb992fa0623a 520 Gene3D G3DSA:3.60.120.10 1 520 4.4E-163 T 29-03-2018 IPR005801 ADC synthase GO:0009058 AM354_RS00845 290c1bd90685b1de8d7cbb992fa0623a 520 PRINTS PR00095 Anthranilate synthase component I signature 444 458 9.7E-25 T 29-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AM354_RS00845 290c1bd90685b1de8d7cbb992fa0623a 520 PRINTS PR00095 Anthranilate synthase component I signature 364 377 9.7E-25 T 29-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AM354_RS00845 290c1bd90685b1de8d7cbb992fa0623a 520 PRINTS PR00095 Anthranilate synthase component I signature 350 363 9.7E-25 T 29-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AM354_RS00845 290c1bd90685b1de8d7cbb992fa0623a 520 PRINTS PR00095 Anthranilate synthase component I signature 459 473 9.7E-25 T 29-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AM354_RS00845 290c1bd90685b1de8d7cbb992fa0623a 520 Pfam PF04715 Anthranilate synthase component I, N terminal region 20 191 5.8E-15 T 29-03-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AM354_RS00845 290c1bd90685b1de8d7cbb992fa0623a 520 TIGRFAM TIGR00565 trpE_proteo: anthranilate synthase component I 17 515 6.0E-242 T 29-03-2018 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AM354_RS13185 512efd1a46ae5b2ce216d479405cd66f 206 Pfam PF01810 LysE type translocator 14 204 9.4E-53 T 29-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AM354_RS13185 512efd1a46ae5b2ce216d479405cd66f 206 PIRSF PIRSF006324 1 206 6.2E-42 T 29-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AM354_RS13185 512efd1a46ae5b2ce216d479405cd66f 206 TIGRFAM TIGR00949 2A76: homoserine/Threonine efflux protein 18 202 6.1E-63 T 29-03-2018 IPR004778 Homoserine/Threonine efflux protein GO:0016021 AM354_RS23550 397735b15ff454c2f2312b4f75ef937c 364 Gene3D G3DSA:1.10.3720.10 1 348 1.4E-36 T 29-03-2018 AM354_RS23550 397735b15ff454c2f2312b4f75ef937c 364 SUPERFAMILY SSF161098 128 345 7.06E-15 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS23550 397735b15ff454c2f2312b4f75ef937c 364 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 151 358 7.3E-39 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS23525 36b9f5a9f1e5803b2c44ca1532055026 237 Gene3D G3DSA:3.30.2350.10 63 230 4.8E-38 T 29-03-2018 AM354_RS23525 36b9f5a9f1e5803b2c44ca1532055026 237 SUPERFAMILY SSF55120 61 227 2.72E-47 T 29-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS23525 36b9f5a9f1e5803b2c44ca1532055026 237 SUPERFAMILY SSF55174 1 85 1.91E-12 T 29-03-2018 AM354_RS23525 36b9f5a9f1e5803b2c44ca1532055026 237 Pfam PF00849 RNA pseudouridylate synthase 62 192 6.4E-19 T 29-03-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS23525 36b9f5a9f1e5803b2c44ca1532055026 237 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 66 224 7.4E-57 T 29-03-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 AM354_RS23525 36b9f5a9f1e5803b2c44ca1532055026 237 Pfam PF01479 S4 domain 1 47 1.8E-8 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM354_RS23525 36b9f5a9f1e5803b2c44ca1532055026 237 SMART SM00363 1 60 8.3E-9 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM354_RS23525 36b9f5a9f1e5803b2c44ca1532055026 237 Gene3D G3DSA:3.10.290.10 1 62 4.0E-15 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM354_RS23525 36b9f5a9f1e5803b2c44ca1532055026 237 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 99 113 - T 29-03-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 AM354_RS19610 ab16a014f9f42d9564723d92fafb8b47 231 Pfam PF00072 Response regulator receiver domain 7 114 1.4E-24 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS19610 ab16a014f9f42d9564723d92fafb8b47 231 SMART SM00448 3 114 2.2E-37 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS19610 ab16a014f9f42d9564723d92fafb8b47 231 SMART SM00862 151 227 2.3E-23 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS19610 ab16a014f9f42d9564723d92fafb8b47 231 Gene3D G3DSA:3.40.50.2300 2 124 1.2E-33 T 29-03-2018 AM354_RS19610 ab16a014f9f42d9564723d92fafb8b47 231 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 226 1.1E-22 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS19610 ab16a014f9f42d9564723d92fafb8b47 231 SUPERFAMILY SSF46894 128 226 4.89E-24 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS19610 ab16a014f9f42d9564723d92fafb8b47 231 SUPERFAMILY SSF52172 3 130 1.37E-37 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS19610 ab16a014f9f42d9564723d92fafb8b47 231 Gene3D G3DSA:1.10.10.10 125 231 8.7E-27 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS24110 1059d3a338810c47596e1d8cf6f3c8a7 354 Gene3D G3DSA:3.40.50.1980 184 353 4.9E-25 T 29-03-2018 AM354_RS24110 1059d3a338810c47596e1d8cf6f3c8a7 354 Pfam PF01497 Periplasmic binding protein 46 292 9.7E-18 T 29-03-2018 IPR002491 ABC transporter periplasmic binding domain GO:0005488 AM354_RS24110 1059d3a338810c47596e1d8cf6f3c8a7 354 Gene3D G3DSA:3.40.50.1980 33 183 4.5E-9 T 29-03-2018 AM354_RS24110 1059d3a338810c47596e1d8cf6f3c8a7 354 SUPERFAMILY SSF53807 38 349 4.71E-32 T 29-03-2018 AM354_RS13935 3383787358f5677936e63c503f087eb2 246 SUPERFAMILY SSF161098 22 212 1.07E-41 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS13935 3383787358f5677936e63c503f087eb2 246 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 44 223 2.1E-21 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS13935 3383787358f5677936e63c503f087eb2 246 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 25 116 3.3E-17 T 29-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 AM354_RS13935 3383787358f5677936e63c503f087eb2 246 Gene3D G3DSA:1.10.3720.10 2 229 1.7E-41 T 29-03-2018 AM354_RS09820 9d7b118773b9c1e6d7900f51f7694346 407 TIGRFAM TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit 3 407 3.8E-231 T 29-03-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 AM354_RS09820 9d7b118773b9c1e6d7900f51f7694346 407 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 38 114 1.1E-10 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM354_RS09820 9d7b118773b9c1e6d7900f51f7694346 407 PIRSF PIRSF000044 1 407 1.5E-220 T 29-03-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 AM354_RS09820 9d7b118773b9c1e6d7900f51f7694346 407 SUPERFAMILY SSF63380 105 272 1.78E-37 T 29-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AM354_RS09820 9d7b118773b9c1e6d7900f51f7694346 407 SUPERFAMILY SSF54292 40 124 8.0E-22 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM354_RS09820 9d7b118773b9c1e6d7900f51f7694346 407 Hamap MF_00430 Na(+)-translocating NADH-quinone reductase subunit F [nqrF]. 1 407 63.471 T 29-03-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 AM354_RS09820 9d7b118773b9c1e6d7900f51f7694346 407 Pfam PF00175 Oxidoreductase NAD-binding domain 277 386 4.5E-18 T 29-03-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AM354_RS09820 9d7b118773b9c1e6d7900f51f7694346 407 Pfam PF00970 Oxidoreductase FAD-binding domain 202 266 7.0E-10 T 29-03-2018 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 AM354_RS09820 9d7b118773b9c1e6d7900f51f7694346 407 Gene3D G3DSA:3.40.50.80 257 401 2.6E-31 T 29-03-2018 AM354_RS09820 9d7b118773b9c1e6d7900f51f7694346 407 SUPERFAMILY SSF52343 257 403 4.85E-38 T 29-03-2018 AM354_RS09820 9d7b118773b9c1e6d7900f51f7694346 407 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 242 251 3.2E-5 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM354_RS09820 9d7b118773b9c1e6d7900f51f7694346 407 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 373 381 3.2E-5 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM354_RS09820 9d7b118773b9c1e6d7900f51f7694346 407 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 209 216 3.2E-5 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM354_RS09820 9d7b118773b9c1e6d7900f51f7694346 407 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 276 295 3.2E-5 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM354_RS09820 9d7b118773b9c1e6d7900f51f7694346 407 Gene3D G3DSA:3.10.20.30 29 136 4.8E-20 T 29-03-2018 IPR012675 Beta-grasp domain AM354_RS09820 9d7b118773b9c1e6d7900f51f7694346 407 Gene3D G3DSA:2.40.30.10 137 256 2.6E-32 T 29-03-2018 AM354_RS00320 466c0350ce9c405f9600e9d7fb08449e 210 Pfam PF00857 Isochorismatase family 3 204 6.1E-34 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM354_RS00320 466c0350ce9c405f9600e9d7fb08449e 210 SUPERFAMILY SSF52499 2 209 1.57E-55 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM354_RS00320 466c0350ce9c405f9600e9d7fb08449e 210 Gene3D G3DSA:3.40.50.850 1 210 5.5E-62 T 29-03-2018 AM354_RS08070 dcef6ad4530e6d5b5e77105bff6f78e0 246 Gene3D G3DSA:3.20.20.370 2 244 9.7E-98 T 29-03-2018 AM354_RS08070 dcef6ad4530e6d5b5e77105bff6f78e0 246 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 1 240 43.506 T 29-03-2018 IPR005501 Uncharacterised protein family UPF0271, LamB/YcsF AM354_RS08070 dcef6ad4530e6d5b5e77105bff6f78e0 246 SUPERFAMILY SSF88713 1 242 6.23E-93 T 29-03-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AM354_RS08070 dcef6ad4530e6d5b5e77105bff6f78e0 246 Pfam PF03746 LamB/YcsF family 3 234 9.7E-94 T 29-03-2018 IPR005501 Uncharacterised protein family UPF0271, LamB/YcsF AM354_RS21725 769553ad32c7ea38f245e2cce36c94cb 266 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 6 262 4.3E-102 T 29-03-2018 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AM354_RS21725 769553ad32c7ea38f245e2cce36c94cb 266 SUPERFAMILY SSF53613 5 265 2.18E-80 T 29-03-2018 IPR029056 Ribokinase-like AM354_RS21725 769553ad32c7ea38f245e2cce36c94cb 266 Pfam PF08543 Phosphomethylpyrimidine kinase 13 260 6.9E-93 T 29-03-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 AM354_RS21725 769553ad32c7ea38f245e2cce36c94cb 266 Gene3D G3DSA:3.40.1190.20 1 266 1.1E-64 T 29-03-2018 IPR029056 Ribokinase-like AM354_RS19725 505e105298243222437af0a279bc1b67 143 Gene3D G3DSA:3.10.180.10 18 143 1.9E-11 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS19725 505e105298243222437af0a279bc1b67 143 SUPERFAMILY SSF54593 34 141 1.61E-13 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS01510 2b53011a9727925b6e2c9fa2a3c74d39 238 Pfam PF00117 Glutamine amidotransferase class-I 28 186 6.2E-13 T 29-03-2018 IPR017926 Glutamine amidotransferase AM354_RS01510 2b53011a9727925b6e2c9fa2a3c74d39 238 SUPERFAMILY SSF52317 20 232 1.42E-40 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS01510 2b53011a9727925b6e2c9fa2a3c74d39 238 Gene3D G3DSA:3.40.50.880 8 237 6.3E-32 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS16325 7156a3024df34109df79ebc9eb9aeee3 269 SUPERFAMILY SSF53649 2 251 2.62E-45 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AM354_RS16325 7156a3024df34109df79ebc9eb9aeee3 269 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 3 208 3.6E-12 T 29-03-2018 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 AM354_RS16325 7156a3024df34109df79ebc9eb9aeee3 269 Gene3D G3DSA:3.40.720.10 1 258 2.7E-34 T 29-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 AM354_RS06485 f2b1752ce611aa0d5a778f581f0875d0 301 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 23 70 3.0E-13 T 29-03-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AM354_RS06485 f2b1752ce611aa0d5a778f581f0875d0 301 Gene3D G3DSA:1.10.3720.10 25 289 1.9E-45 T 29-03-2018 AM354_RS06485 f2b1752ce611aa0d5a778f581f0875d0 301 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 117 300 9.2E-31 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS06485 f2b1752ce611aa0d5a778f581f0875d0 301 SUPERFAMILY SSF161098 94 282 6.41E-30 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS15630 c5e58e799082ed22bfcf62d8ab154eeb 456 SMART SM00388 233 293 7.8E-12 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS15630 c5e58e799082ed22bfcf62d8ab154eeb 456 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 338 438 2.6E-17 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS15630 c5e58e799082ed22bfcf62d8ab154eeb 456 SMART SM00387 332 440 1.4E-26 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS15630 c5e58e799082ed22bfcf62d8ab154eeb 456 Pfam PF00672 HAMP domain 182 225 1.0E-7 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM354_RS15630 c5e58e799082ed22bfcf62d8ab154eeb 456 Gene3D G3DSA:1.10.287.130 223 289 2.5E-12 T 29-03-2018 AM354_RS15630 c5e58e799082ed22bfcf62d8ab154eeb 456 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 418 2.1E-10 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS15630 c5e58e799082ed22bfcf62d8ab154eeb 456 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 395 2.1E-10 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS15630 c5e58e799082ed22bfcf62d8ab154eeb 456 PRINTS PR00344 Bacterial sensor protein C-terminal signature 367 381 2.1E-10 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS15630 c5e58e799082ed22bfcf62d8ab154eeb 456 Pfam PF00512 His Kinase A (phospho-acceptor) domain 235 289 6.0E-10 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS15630 c5e58e799082ed22bfcf62d8ab154eeb 456 SUPERFAMILY SSF47384 217 291 1.18E-11 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS15630 c5e58e799082ed22bfcf62d8ab154eeb 456 SUPERFAMILY SSF55874 292 440 8.12E-31 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS15630 c5e58e799082ed22bfcf62d8ab154eeb 456 Gene3D G3DSA:3.30.565.10 294 450 6.6E-32 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS15630 c5e58e799082ed22bfcf62d8ab154eeb 456 SMART SM00304 180 232 5.3E-6 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM354_RS22080 1d3c787c17cf0031f8a288ff1910fcf2 287 Pfam PF04228 Putative neutral zinc metallopeptidase 1 284 2.7E-138 T 29-03-2018 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative AM354_RS17430 ae175e5c4f1ecc692ea8a32fe0cbc9bd 471 Pfam PF07731 Multicopper oxidase 358 469 6.9E-15 T 29-03-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 AM354_RS17430 ae175e5c4f1ecc692ea8a32fe0cbc9bd 471 Pfam PF07732 Multicopper oxidase 53 166 1.5E-23 T 29-03-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 AM354_RS17430 ae175e5c4f1ecc692ea8a32fe0cbc9bd 471 Hamap MF_00915 Cell division protein FtsP [ftsP]. 1 468 58.343 T 29-03-2018 IPR026589 Cell division protein FtsP GO:0043093 AM354_RS17430 ae175e5c4f1ecc692ea8a32fe0cbc9bd 471 Gene3D G3DSA:2.60.40.420 28 164 2.0E-20 T 29-03-2018 IPR008972 Cupredoxin AM354_RS17430 ae175e5c4f1ecc692ea8a32fe0cbc9bd 471 SUPERFAMILY SSF49503 314 467 5.91E-19 T 29-03-2018 IPR008972 Cupredoxin AM354_RS17430 ae175e5c4f1ecc692ea8a32fe0cbc9bd 471 SUPERFAMILY SSF49503 172 288 6.1E-32 T 29-03-2018 IPR008972 Cupredoxin AM354_RS17430 ae175e5c4f1ecc692ea8a32fe0cbc9bd 471 SUPERFAMILY SSF49503 3 165 4.46E-23 T 29-03-2018 IPR008972 Cupredoxin AM354_RS17430 ae175e5c4f1ecc692ea8a32fe0cbc9bd 471 Pfam PF00394 Multicopper oxidase 208 289 3.6E-4 T 29-03-2018 IPR001117 Multicopper oxidase, type 1 GO:0055114 AM354_RS17430 ae175e5c4f1ecc692ea8a32fe0cbc9bd 471 Gene3D G3DSA:2.60.40.420 346 471 1.4E-16 T 29-03-2018 IPR008972 Cupredoxin AM354_RS17430 ae175e5c4f1ecc692ea8a32fe0cbc9bd 471 Gene3D G3DSA:2.60.40.420 168 303 4.0E-28 T 29-03-2018 IPR008972 Cupredoxin AM354_RS01365 19fa56178ac878b255f0d068586dad9a 201 Gene3D G3DSA:3.40.50.360 3 201 5.3E-42 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS01365 19fa56178ac878b255f0d068586dad9a 201 SUPERFAMILY SSF52218 1 199 3.52E-58 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS01365 19fa56178ac878b255f0d068586dad9a 201 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 199 32.428 T 29-03-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 AM354_RS01365 19fa56178ac878b255f0d068586dad9a 201 Pfam PF02525 Flavodoxin-like fold 3 195 1.3E-46 T 29-03-2018 IPR003680 Flavodoxin-like fold AM354_RS05520 08d8634db665fd263ec85bddc413fe59 192 Gene3D G3DSA:3.40.50.360 1 185 2.7E-33 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS05520 08d8634db665fd263ec85bddc413fe59 192 Pfam PF03358 NADPH-dependent FMN reductase 1 141 4.0E-33 T 29-03-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AM354_RS05520 08d8634db665fd263ec85bddc413fe59 192 SUPERFAMILY SSF52218 1 168 2.17E-32 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS05520 08d8634db665fd263ec85bddc413fe59 192 TIGRFAM TIGR03567 FMN_reduc_SsuE: FMN reductase 2 169 6.6E-72 T 29-03-2018 IPR020048 NADPH-dependent FMN reductase, SsuE GO:0008752|GO:0046306|GO:0055114 KEGG: 00740+1.5.1.38|MetaCyc: PWY-7723 AM354_RS08750 2a2ae459511d775f1a015c4ff98a5cab 255 SMART SM00342 169 251 7.5E-16 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS08750 2a2ae459511d775f1a015c4ff98a5cab 255 Pfam PF02311 AraC-like ligand binding domain 18 120 5.5E-12 T 29-03-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AM354_RS08750 2a2ae459511d775f1a015c4ff98a5cab 255 Gene3D G3DSA:2.60.120.10 6 88 8.1E-9 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS08750 2a2ae459511d775f1a015c4ff98a5cab 255 SUPERFAMILY SSF51182 29 183 6.89E-16 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS08750 2a2ae459511d775f1a015c4ff98a5cab 255 Gene3D G3DSA:1.10.10.60 209 255 2.0E-8 T 29-03-2018 AM354_RS08750 2a2ae459511d775f1a015c4ff98a5cab 255 Pfam PF12833 Helix-turn-helix domain 175 253 6.3E-19 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS08750 2a2ae459511d775f1a015c4ff98a5cab 255 Gene3D G3DSA:1.10.10.60 156 208 1.5E-8 T 29-03-2018 AM354_RS08750 2a2ae459511d775f1a015c4ff98a5cab 255 SUPERFAMILY SSF46689 205 253 2.29E-7 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS02980 19dd7b4b8c7a9c44d51cc896e8ba7798 231 Pfam PF01966 HD domain 50 150 4.3E-9 T 29-03-2018 IPR006674 HD domain AM354_RS02980 19dd7b4b8c7a9c44d51cc896e8ba7798 231 Gene3D G3DSA:1.10.3210.10 16 231 4.1E-17 T 29-03-2018 AM354_RS02980 19dd7b4b8c7a9c44d51cc896e8ba7798 231 SMART SM00471 43 160 3.1E-5 T 29-03-2018 IPR003607 HD/PDEase domain AM354_RS02980 19dd7b4b8c7a9c44d51cc896e8ba7798 231 SUPERFAMILY SSF109604 30 231 1.88E-57 T 29-03-2018 AM354_RS08560 b65fbb2e1d6c6c2709c540ec14d3d722 355 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 3 325 33.83 T 29-03-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 AM354_RS08560 b65fbb2e1d6c6c2709c540ec14d3d722 355 Gene3D G3DSA:3.30.1490.20 94 155 9.8E-13 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AM354_RS08560 b65fbb2e1d6c6c2709c540ec14d3d722 355 SUPERFAMILY SSF51246 278 353 2.28E-21 T 29-03-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AM354_RS08560 b65fbb2e1d6c6c2709c540ec14d3d722 355 Gene3D G3DSA:3.40.50.20 1 69 5.8E-15 T 29-03-2018 AM354_RS08560 b65fbb2e1d6c6c2709c540ec14d3d722 355 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 4 330 3.9E-111 T 29-03-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 AM354_RS08560 b65fbb2e1d6c6c2709c540ec14d3d722 355 SUPERFAMILY SSF52440 2 74 3.6E-15 T 29-03-2018 IPR016185 Pre-ATP-grasp domain AM354_RS08560 b65fbb2e1d6c6c2709c540ec14d3d722 355 SUPERFAMILY SSF56059 79 274 6.72E-59 T 29-03-2018 AM354_RS08560 b65fbb2e1d6c6c2709c540ec14d3d722 355 Gene3D G3DSA:3.30.470.20 156 339 5.9E-33 T 29-03-2018 AM354_RS08560 b65fbb2e1d6c6c2709c540ec14d3d722 355 Pfam PF02222 ATP-grasp domain 88 254 1.9E-53 T 29-03-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type AM354_RS10935 11ae0cb9dbdd3f8e415456b775d75218 22 Pfam PF08254 Threonine leader peptide 1 22 1.3E-11 T 29-03-2018 IPR011720 Thr operon leader peptide GO:0009088|GO:0031554|GO:0031556 AM354_RS10935 11ae0cb9dbdd3f8e415456b775d75218 22 TIGRFAM TIGR02077 thr_lead_pep: thr operon leader peptide 1 22 5.6E-10 T 29-03-2018 IPR011720 Thr operon leader peptide GO:0009088|GO:0031554|GO:0031556 AM354_RS10935 11ae0cb9dbdd3f8e415456b775d75218 22 Hamap MF_01907 thr operon leader peptide [thrL]. 1 22 11.862 T 29-03-2018 IPR011720 Thr operon leader peptide GO:0009088|GO:0031554|GO:0031556 AM354_RS01505 e753d40937c5b9afc39b78082b6e7bd7 280 Gene3D G3DSA:3.40.1190.20 9 266 2.1E-40 T 29-03-2018 IPR029056 Ribokinase-like AM354_RS01505 e753d40937c5b9afc39b78082b6e7bd7 280 TIGRFAM TIGR00687 pyridox_kin: pyridoxal kinase 13 272 1.3E-43 T 29-03-2018 IPR004625 Pyridoxine kinase GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-6798695|Reactome: R-HSA-964975 AM354_RS01505 e753d40937c5b9afc39b78082b6e7bd7 280 Pfam PF08543 Phosphomethylpyrimidine kinase 87 268 3.7E-21 T 29-03-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 AM354_RS01505 e753d40937c5b9afc39b78082b6e7bd7 280 SUPERFAMILY SSF53613 14 265 2.96E-53 T 29-03-2018 IPR029056 Ribokinase-like AM354_RS11545 a6a0bae8d8aea36d4db9deae1bc26d93 465 Pfam PF01943 Polysaccharide biosynthesis protein 4 275 6.8E-20 T 29-03-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 AM354_RS03185 aa737eb49d9def3eac8bc0c62b8abae9 78 Gene3D G3DSA:1.20.5.190 22 73 1.8E-16 T 29-03-2018 AM354_RS03185 aa737eb49d9def3eac8bc0c62b8abae9 78 SUPERFAMILY SSF58042 24 73 7.72E-23 T 29-03-2018 AM354_RS03185 aa737eb49d9def3eac8bc0c62b8abae9 78 Pfam PF04728 Lipoprotein leucine-zipper 26 78 3.0E-25 T 29-03-2018 IPR006817 Lipoprotein leucine-zipper GO:0019867 AM354_RS03185 aa737eb49d9def3eac8bc0c62b8abae9 78 PIRSF PIRSF002855 1 78 1.4E-29 T 29-03-2018 IPR016367 Murein-lipoprotein AM354_RS14615 c4bf944e7b244f42d6dc411f9763fe2a 298 SUPERFAMILY SSF51730 22 293 9.42E-98 T 29-03-2018 IPR029041 FAD-linked oxidoreductase-like AM354_RS14615 c4bf944e7b244f42d6dc411f9763fe2a 298 Pfam PF02219 Methylenetetrahydrofolate reductase 17 291 1.3E-108 T 29-03-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 AM354_RS14615 c4bf944e7b244f42d6dc411f9763fe2a 298 Gene3D G3DSA:3.20.20.220 1 298 4.9E-101 T 29-03-2018 IPR029041 FAD-linked oxidoreductase-like AM354_RS14615 c4bf944e7b244f42d6dc411f9763fe2a 298 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 25 290 1.3E-104 T 29-03-2018 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841 AM354_RS11380 2a069a2b4dbb89ead4e0f2b79ef68302 416 SUPERFAMILY SSF56024 191 408 6.73E-31 T 29-03-2018 AM354_RS11380 2a069a2b4dbb89ead4e0f2b79ef68302 416 Pfam PF13091 PLD-like domain 66 198 1.2E-21 T 29-03-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AM354_RS11380 2a069a2b4dbb89ead4e0f2b79ef68302 416 Pfam PF13091 PLD-like domain 249 393 3.9E-15 T 29-03-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AM354_RS11380 2a069a2b4dbb89ead4e0f2b79ef68302 416 SMART SM00155 338 365 4.7E-5 T 29-03-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AM354_RS11380 2a069a2b4dbb89ead4e0f2b79ef68302 416 SMART SM00155 143 170 1.3E-5 T 29-03-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AM354_RS11380 2a069a2b4dbb89ead4e0f2b79ef68302 416 Gene3D G3DSA:3.30.870.10 39 223 3.2E-28 T 29-03-2018 AM354_RS11380 2a069a2b4dbb89ead4e0f2b79ef68302 416 Gene3D G3DSA:3.30.870.10 225 415 5.0E-25 T 29-03-2018 AM354_RS11380 2a069a2b4dbb89ead4e0f2b79ef68302 416 SUPERFAMILY SSF56024 55 219 1.91E-31 T 29-03-2018 AM354_RS19155 132cce758e628cdb9b7e4ebe861192e0 105 Pfam PF00355 Rieske [2Fe-2S] domain 2 89 1.1E-19 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AM354_RS19155 132cce758e628cdb9b7e4ebe861192e0 105 SUPERFAMILY SSF50022 1 100 1.7E-31 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AM354_RS19155 132cce758e628cdb9b7e4ebe861192e0 105 Gene3D G3DSA:2.102.10.10 1 105 1.2E-25 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AM354_RS18650 507014d1def16f6bed531002e0cdf950 382 Pfam PF06965 Na+/H+ antiporter 1 7 373 9.8E-142 T 29-03-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 AM354_RS18650 507014d1def16f6bed531002e0cdf950 382 Gene3D G3DSA:1.20.1530.10 4 379 1.4E-143 T 29-03-2018 IPR023171 Na/H antiporter domain AM354_RS18650 507014d1def16f6bed531002e0cdf950 382 Hamap MF_01844 Na(+)/H(+) antiporter NhaA [nhaA]. 5 382 23.066 T 29-03-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 AM354_RS18650 507014d1def16f6bed531002e0cdf950 382 TIGRFAM TIGR00773 NhaA: Na+/H+ antiporter NhaA 8 373 5.8E-133 T 29-03-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 AM354_RS21080 d5f210acf909d2dc798020844e7f6d2d 218 SUPERFAMILY SSF56784 14 140 8.27E-9 T 29-03-2018 IPR023214 HAD-like domain AM354_RS21080 d5f210acf909d2dc798020844e7f6d2d 218 Pfam PF12710 haloacid dehalogenase-like hydrolase 16 199 6.3E-15 T 29-03-2018 AM354_RS21080 d5f210acf909d2dc798020844e7f6d2d 218 TIGRFAM TIGR01545 YfhB_g-proteo: HAD hydrolase, family IF 10 218 1.6E-119 T 29-03-2018 IPR006435 HAD-superfamily hydrolase, subfamily IF, YfhB KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 AM354_RS21080 d5f210acf909d2dc798020844e7f6d2d 218 Gene3D G3DSA:3.40.50.1000 1 161 2.5E-8 T 29-03-2018 IPR023214 HAD-like domain AM354_RS03470 a870b0e497e86e76f196fb0476d2ef7a 296 SMART SM00382 36 224 4.2E-11 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS03470 a870b0e497e86e76f196fb0476d2ef7a 296 Gene3D G3DSA:3.40.50.300 7 285 4.6E-58 T 29-03-2018 AM354_RS03470 a870b0e497e86e76f196fb0476d2ef7a 296 Pfam PF00005 ABC transporter 28 174 7.4E-30 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS03470 a870b0e497e86e76f196fb0476d2ef7a 296 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS03470 a870b0e497e86e76f196fb0476d2ef7a 296 SUPERFAMILY SSF52540 6 234 4.51E-58 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS00660 44524647f7dc518b05cd930f45081fdf 114 Pfam PF05106 Phage holin family (Lysis protein S) 2 102 1.2E-29 T 29-03-2018 IPR006481 Bacteriophage lambda, GpS, holin AM354_RS00660 44524647f7dc518b05cd930f45081fdf 114 TIGRFAM TIGR01594 holin_lambda: phage holin, lambda family 2 107 9.1E-32 T 29-03-2018 IPR006481 Bacteriophage lambda, GpS, holin AM354_RS18080 55557df1f01d526c56350269f7723cd5 707 Pfam PF00593 TonB dependent receptor 243 704 8.9E-49 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS18080 55557df1f01d526c56350269f7723cd5 707 SUPERFAMILY SSF56935 34 707 3.28E-116 T 29-03-2018 AM354_RS18080 55557df1f01d526c56350269f7723cd5 707 Gene3D G3DSA:2.40.170.20 171 707 2.2E-77 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS18080 55557df1f01d526c56350269f7723cd5 707 Gene3D G3DSA:2.170.130.10 22 170 2.0E-24 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS18080 55557df1f01d526c56350269f7723cd5 707 Pfam PF07715 TonB-dependent Receptor Plug Domain 52 164 1.0E-20 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS18080 55557df1f01d526c56350269f7723cd5 707 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 52 707 9.9E-92 T 29-03-2018 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 AM354_RS18080 55557df1f01d526c56350269f7723cd5 707 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 39 - T 29-03-2018 IPR010916 TonB box, conserved site AM354_RS18080 55557df1f01d526c56350269f7723cd5 707 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 690 707 - T 29-03-2018 IPR010917 TonB-dependent receptor, conserved site AM354_RS22475 4f71ab2281628590eee9f3ef347bbad7 261 Gene3D G3DSA:1.20.1080.10 2 260 7.4E-82 T 29-03-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 AM354_RS22475 4f71ab2281628590eee9f3ef347bbad7 261 Pfam PF01226 Formate/nitrite transporter 8 248 2.8E-74 T 29-03-2018 IPR000292 Formate/nitrite transporter GO:0005215|GO:0006810|GO:0016020 AM354_RS22475 4f71ab2281628590eee9f3ef347bbad7 261 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 161 171 - T 29-03-2018 IPR024002 Formate/nitrite transporter, conserved site AM354_RS14435 6d8e4720ed1b2de675566552c665e153 514 PIRSF PIRSF001492 1 514 6.8E-202 T 29-03-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM354_RS14435 6d8e4720ed1b2de675566552c665e153 514 Pfam PF01676 Metalloenzyme superfamily 6 500 9.4E-82 T 29-03-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 AM354_RS14435 6d8e4720ed1b2de675566552c665e153 514 Gene3D G3DSA:3.40.1450.10 79 304 6.4E-93 T 29-03-2018 AM354_RS14435 6d8e4720ed1b2de675566552c665e153 514 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 6 512 50.086 T 29-03-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM354_RS14435 6d8e4720ed1b2de675566552c665e153 514 SUPERFAMILY SSF64158 79 311 6.67E-84 T 29-03-2018 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM354_RS14435 6d8e4720ed1b2de675566552c665e153 514 SUPERFAMILY SSF53649 309 510 2.09E-75 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AM354_RS14435 6d8e4720ed1b2de675566552c665e153 514 SUPERFAMILY SSF53649 5 79 2.09E-75 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AM354_RS14435 6d8e4720ed1b2de675566552c665e153 514 Gene3D G3DSA:3.40.720.10 305 513 2.5E-36 T 29-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 AM354_RS14435 6d8e4720ed1b2de675566552c665e153 514 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 85 300 2.0E-81 T 29-03-2018 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM354_RS14435 6d8e4720ed1b2de675566552c665e153 514 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 6 511 8.0E-234 T 29-03-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM354_RS18865 780ee8ab6e947a91d3147ac0b98a7983 235 Pfam PF01168 Alanine racemase, N-terminal domain 7 230 5.2E-30 T 29-03-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM354_RS18865 780ee8ab6e947a91d3147ac0b98a7983 235 SUPERFAMILY SSF51419 1 228 1.03E-80 T 29-03-2018 IPR029066 PLP-binding barrel AM354_RS18865 780ee8ab6e947a91d3147ac0b98a7983 235 Gene3D G3DSA:3.20.20.10 1 235 1.1E-71 T 29-03-2018 IPR029066 PLP-binding barrel AM354_RS18865 780ee8ab6e947a91d3147ac0b98a7983 235 ProSitePatterns PS01211 Uncharacterized protein family UPF0001 signature. 80 94 - T 29-03-2018 IPR011078 Pyridoxal phosphate homeostasis protein AM354_RS18865 780ee8ab6e947a91d3147ac0b98a7983 235 PIRSF PIRSF004848 1 235 2.0E-73 T 29-03-2018 IPR011078 Pyridoxal phosphate homeostasis protein AM354_RS18865 780ee8ab6e947a91d3147ac0b98a7983 235 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 1 230 3.8E-92 T 29-03-2018 IPR011078 Pyridoxal phosphate homeostasis protein AM354_RS03750 9cc97796b78721ecf7da51301a9c3e31 472 Gene3D G3DSA:3.10.20.70 21 132 7.8E-15 T 29-03-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AM354_RS03750 9cc97796b78721ecf7da51301a9c3e31 472 SUPERFAMILY SSF55931 134 469 9.42E-101 T 29-03-2018 AM354_RS03750 9cc97796b78721ecf7da51301a9c3e31 472 Gene3D G3DSA:3.30.590.10 133 472 7.5E-94 T 29-03-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 AM354_RS03750 9cc97796b78721ecf7da51301a9c3e31 472 SUPERFAMILY SSF54368 38 132 5.49E-9 T 29-03-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AM354_RS03750 9cc97796b78721ecf7da51301a9c3e31 472 SMART SM01230 133 390 5.8E-102 T 29-03-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AM354_RS03750 9cc97796b78721ecf7da51301a9c3e31 472 Pfam PF00120 Glutamine synthetase, catalytic domain 134 467 5.0E-104 T 29-03-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AM354_RS03750 9cc97796b78721ecf7da51301a9c3e31 472 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 271 286 - T 29-03-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 AM354_RS20480 912a31c681265c12922cc16ab88fe8e6 451 Pfam PF03390 2-hydroxycarboxylate transporter family 34 442 2.8E-141 T 29-03-2018 IPR004679 2-hydroxycarboxylate transporter GO:0008514|GO:0015711|GO:0016021 AM354_RS20480 912a31c681265c12922cc16ab88fe8e6 451 PIRSF PIRSF005348 13 450 8.4E-158 T 29-03-2018 IPR004679 2-hydroxycarboxylate transporter GO:0008514|GO:0015711|GO:0016021 AM354_RS25140 7ad7119e55d643f861d016d9e7330d6a 130 Pfam PF13665 Domain of unknown function (DUF4150) 10 115 1.2E-39 T 29-03-2018 IPR025425 Domain of unknown function DUF4150 AM354_RS04490 5eeaed77158ed2ac901fbeb7ab7e125e 141 Gene3D G3DSA:3.40.50.620 2 141 7.5E-15 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS04490 5eeaed77158ed2ac901fbeb7ab7e125e 141 Pfam PF00582 Universal stress protein family 3 138 5.9E-14 T 29-03-2018 IPR006016 UspA GO:0006950 AM354_RS04490 5eeaed77158ed2ac901fbeb7ab7e125e 141 PIRSF PIRSF006276 1 141 6.4E-41 T 29-03-2018 IPR006015 Universal stress protein A AM354_RS04490 5eeaed77158ed2ac901fbeb7ab7e125e 141 SUPERFAMILY SSF52402 3 138 7.79E-22 T 29-03-2018 AM354_RS09170 8df2bd26493bc4d62539eef1f8636ba7 87 PIRSF PIRSF006488 5 85 1.1E-24 T 29-03-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AM354_RS09170 8df2bd26493bc4d62539eef1f8636ba7 87 SUPERFAMILY SSF116842 12 78 1.44E-21 T 29-03-2018 AM354_RS09170 8df2bd26493bc4d62539eef1f8636ba7 87 Pfam PF02609 Exonuclease VII small subunit 17 68 4.3E-21 T 29-03-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AM354_RS09170 8df2bd26493bc4d62539eef1f8636ba7 87 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 16 76 16.775 T 29-03-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AM354_RS09170 8df2bd26493bc4d62539eef1f8636ba7 87 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 1 49 2.0E-11 T 29-03-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AM354_RS09170 8df2bd26493bc4d62539eef1f8636ba7 87 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 16 71 2.2E-24 T 29-03-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AM354_RS09170 8df2bd26493bc4d62539eef1f8636ba7 87 Gene3D G3DSA:1.10.287.1040 14 82 1.1E-25 T 29-03-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AM354_RS17740 fa93209e4f29ccc9b8c7b8fc401d7148 236 SUPERFAMILY SSF52218 24 223 1.34E-63 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS17740 fa93209e4f29ccc9b8c7b8fc401d7148 236 Gene3D G3DSA:3.40.50.360 20 221 3.2E-46 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS17740 fa93209e4f29ccc9b8c7b8fc401d7148 236 TIGRFAM TIGR02690 resist_ArsH: arsenical resistance protein ArsH 24 222 1.4E-120 T 29-03-2018 IPR014063 Arsenate resistance ArsH AM354_RS17740 fa93209e4f29ccc9b8c7b8fc401d7148 236 Pfam PF03358 NADPH-dependent FMN reductase 30 175 7.1E-27 T 29-03-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AM354_RS17450 95099b43878101c662ad4fe3841cb28d 310 Pfam PF00294 pfkB family carbohydrate kinase 10 297 1.6E-40 T 29-03-2018 IPR011611 Carbohydrate kinase PfkB AM354_RS17450 95099b43878101c662ad4fe3841cb28d 310 SUPERFAMILY SSF53613 9 306 1.2E-54 T 29-03-2018 IPR029056 Ribokinase-like AM354_RS17450 95099b43878101c662ad4fe3841cb28d 310 Gene3D G3DSA:3.40.1190.20 7 310 4.1E-54 T 29-03-2018 IPR029056 Ribokinase-like AM354_RS17450 95099b43878101c662ad4fe3841cb28d 310 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 252 265 - T 29-03-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AM354_RS13045 71b45ea14185952b2f0cfab25debfe7f 405 Gene3D G3DSA:3.20.20.150 29 306 4.3E-4 T 29-03-2018 AM354_RS13045 71b45ea14185952b2f0cfab25debfe7f 405 Pfam PF11340 Protein of unknown function (DUF3142) 87 309 1.9E-105 T 29-03-2018 IPR021488 Protein of unknown function DUF3142 AM354_RS01490 a4a17c386a7590e5a9ffaab580a56323 580 SUPERFAMILY SSF55729 305 464 2.47E-24 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS01490 a4a17c386a7590e5a9ffaab580a56323 580 SMART SM00563 77 194 2.5E-4 T 29-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AM354_RS01490 a4a17c386a7590e5a9ffaab580a56323 580 Gene3D G3DSA:3.40.630.30 301 478 3.1E-23 T 29-03-2018 AM354_RS01490 a4a17c386a7590e5a9ffaab580a56323 580 Pfam PF13444 Acetyltransferase (GNAT) domain 322 422 5.2E-23 T 29-03-2018 AM354_RS01490 a4a17c386a7590e5a9ffaab580a56323 580 Gene3D G3DSA:3.40.1130.10 31 270 8.4E-40 T 29-03-2018 AM354_RS01490 a4a17c386a7590e5a9ffaab580a56323 580 SUPERFAMILY SSF69593 51 259 1.44E-16 T 29-03-2018 AM354_RS01490 a4a17c386a7590e5a9ffaab580a56323 580 Pfam PF01553 Acyltransferase 68 192 2.2E-12 T 29-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AM354_RS24270 e0c902713f06a15d6f15586866a672ad 295 Pfam PF12833 Helix-turn-helix domain 28 106 1.4E-18 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS24270 e0c902713f06a15d6f15586866a672ad 295 SMART SM00342 22 105 8.6E-23 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS24270 e0c902713f06a15d6f15586866a672ad 295 Gene3D G3DSA:1.10.10.60 62 115 2.2E-11 T 29-03-2018 AM354_RS24270 e0c902713f06a15d6f15586866a672ad 295 Gene3D G3DSA:3.20.80.10 212 287 0.0066 T 29-03-2018 IPR011256 Regulatory factor, effector binding domain AM354_RS24270 e0c902713f06a15d6f15586866a672ad 295 SUPERFAMILY SSF46689 59 109 1.03E-11 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS24270 e0c902713f06a15d6f15586866a672ad 295 Gene3D G3DSA:1.10.10.60 4 61 2.7E-11 T 29-03-2018 AM354_RS24270 e0c902713f06a15d6f15586866a672ad 295 SUPERFAMILY SSF46689 17 56 3.85E-5 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS16905 72f6577eb6d91ab1520b736a12b93504 95 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 93 8.2E-29 T 29-03-2018 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 AM354_RS16905 72f6577eb6d91ab1520b736a12b93504 95 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 95 5.2E-35 T 29-03-2018 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 AM354_RS16905 72f6577eb6d91ab1520b736a12b93504 95 Gene3D G3DSA:3.30.160.100 1 95 5.4E-34 T 29-03-2018 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 AM354_RS16905 72f6577eb6d91ab1520b736a12b93504 95 SUPERFAMILY SSF69754 2 95 9.16E-36 T 29-03-2018 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 AM354_RS14420 a683d239172c2abc149aac3136a1f323 341 Pfam PF00107 Zinc-binding dehydrogenase 174 301 2.6E-28 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AM354_RS14420 a683d239172c2abc149aac3136a1f323 341 SMART SM00829 12 338 1.5E-6 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AM354_RS14420 a683d239172c2abc149aac3136a1f323 341 TIGRFAM TIGR00692 tdh: L-threonine 3-dehydrogenase 3 340 5.9E-184 T 29-03-2018 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00260+1.1.1.103|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-7378 AM354_RS14420 a683d239172c2abc149aac3136a1f323 341 SUPERFAMILY SSF50129 1 173 9.59E-54 T 29-03-2018 IPR011032 GroES-like AM354_RS14420 a683d239172c2abc149aac3136a1f323 341 Hamap MF_00627 L-threonine 3-dehydrogenase [tdh]. 1 340 60.508 T 29-03-2018 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00260+1.1.1.103|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-7378 AM354_RS14420 a683d239172c2abc149aac3136a1f323 341 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 134 4.6E-32 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AM354_RS14420 a683d239172c2abc149aac3136a1f323 341 Gene3D G3DSA:3.40.50.10730 153 304 3.3E-27 T 29-03-2018 AM354_RS14420 a683d239172c2abc149aac3136a1f323 341 SUPERFAMILY SSF51735 141 305 3.4E-38 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS14420 a683d239172c2abc149aac3136a1f323 341 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 62 76 - T 29-03-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AM354_RS14420 a683d239172c2abc149aac3136a1f323 341 Gene3D G3DSA:3.90.180.10 1 152 7.7E-46 T 29-03-2018 AM354_RS11050 be5e9e9af5a403423ddb168d5d61179f 243 Pfam PF01048 Phosphorylase superfamily 15 218 1.3E-36 T 29-03-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AM354_RS11050 be5e9e9af5a403423ddb168d5d61179f 243 SUPERFAMILY SSF53167 3 238 3.01E-90 T 29-03-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AM354_RS11050 be5e9e9af5a403423ddb168d5d61179f 243 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 62 77 - T 29-03-2018 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM354_RS11050 be5e9e9af5a403423ddb168d5d61179f 243 Hamap MF_01627 Purine nucleoside phosphorylase DeoD-type [deoD]. 2 239 50.551 T 29-03-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 AM354_RS11050 be5e9e9af5a403423ddb168d5d61179f 243 Gene3D G3DSA:3.40.50.1580 9 239 1.2E-53 T 29-03-2018 AM354_RS11050 be5e9e9af5a403423ddb168d5d61179f 243 TIGRFAM TIGR00107 deoD: purine nucleoside phosphorylase 5 238 9.4E-119 T 29-03-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 AM354_RS18545 079b42ed1f87aefba89b146ca8bc13ff 144 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 9 20 4.7E-25 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS18545 079b42ed1f87aefba89b146ca8bc13ff 144 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 44 64 4.7E-25 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS18545 079b42ed1f87aefba89b146ca8bc13ff 144 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 20 33 4.7E-25 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS18545 079b42ed1f87aefba89b146ca8bc13ff 144 Gene3D G3DSA:1.10.1660.10 4 63 8.4E-21 T 29-03-2018 AM354_RS18545 079b42ed1f87aefba89b146ca8bc13ff 144 Pfam PF00376 MerR family regulatory protein 9 46 9.5E-11 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS18545 079b42ed1f87aefba89b146ca8bc13ff 144 SUPERFAMILY SSF46955 8 129 2.53E-29 T 29-03-2018 IPR009061 Putative DNA-binding domain AM354_RS18545 079b42ed1f87aefba89b146ca8bc13ff 144 ProSitePatterns PS00552 MerR-type HTH domain signature. 11 33 - T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS18545 079b42ed1f87aefba89b146ca8bc13ff 144 Pfam PF09278 MerR, DNA binding 51 113 1.9E-18 T 29-03-2018 IPR015358 Transcription regulator MerR, DNA binding AM354_RS18545 079b42ed1f87aefba89b146ca8bc13ff 144 SMART SM00422 8 77 4.9E-29 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM354_RS18545 079b42ed1f87aefba89b146ca8bc13ff 144 TIGRFAM TIGR02051 MerR: Hg(II)-responsive transcriptional regulator 9 132 5.4E-55 T 29-03-2018 IPR011794 Hg(II)-responsive transcriptional regulator GO:0003677|GO:0006355|GO:0045340|GO:0046689 AM354_RS18545 079b42ed1f87aefba89b146ca8bc13ff 144 Gene3D G3DSA:1.10.1660.10 64 143 9.2E-21 T 29-03-2018 AM354_RS17550 4ffaaf82951804530964a67b7ceb461f 377 SUPERFAMILY SSF51735 152 339 3.62E-63 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS17550 4ffaaf82951804530964a67b7ceb461f 377 Gene3D G3DSA:3.90.180.10 276 377 3.0E-4 T 29-03-2018 AM354_RS17550 4ffaaf82951804530964a67b7ceb461f 377 Gene3D G3DSA:3.40.50.10730 172 275 6.5E-22 T 29-03-2018 AM354_RS17550 4ffaaf82951804530964a67b7ceb461f 377 Gene3D G3DSA:3.90.180.10 1 171 7.1E-45 T 29-03-2018 AM354_RS17550 4ffaaf82951804530964a67b7ceb461f 377 Pfam PF13823 Alcohol dehydrogenase GroES-associated 1 22 4.4E-9 T 29-03-2018 IPR027399 Alcohol dehydrogenase GroES-associated AM354_RS17550 4ffaaf82951804530964a67b7ceb461f 377 SUPERFAMILY SSF50129 1 185 1.2E-60 T 29-03-2018 IPR011032 GroES-like AM354_RS17550 4ffaaf82951804530964a67b7ceb461f 377 Pfam PF00107 Zinc-binding dehydrogenase 186 319 1.2E-13 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AM354_RS17550 4ffaaf82951804530964a67b7ceb461f 377 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 134 1.5E-26 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AM354_RS17860 516d72ab70065da989aba1041b35b948 245 Pfam PF01551 Peptidase family M23 122 215 5.3E-25 T 29-03-2018 IPR016047 Peptidase M23 AM354_RS17860 516d72ab70065da989aba1041b35b948 245 Gene3D G3DSA:2.70.70.10 21 222 3.8E-34 T 29-03-2018 AM354_RS17860 516d72ab70065da989aba1041b35b948 245 SUPERFAMILY SSF51261 6 217 1.94E-46 T 29-03-2018 IPR011055 Duplicated hybrid motif AM354_RS16640 9a3cc262ebaa78c3304f1fedbcba8281 334 Hamap MF_02042 tRNA-dihydrouridine synthase B [dusB]. 1 321 49.129 T 29-03-2018 IPR032887 tRNA-dihydrouridine synthase B GO:0002943|GO:0017150 AM354_RS16640 9a3cc262ebaa78c3304f1fedbcba8281 334 Gene3D G3DSA:1.10.1200.80 252 329 1.7E-20 T 29-03-2018 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 AM354_RS16640 9a3cc262ebaa78c3304f1fedbcba8281 334 Pfam PF01207 Dihydrouridine synthase (Dus) 14 318 5.4E-115 T 29-03-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AM354_RS16640 9a3cc262ebaa78c3304f1fedbcba8281 334 SUPERFAMILY SSF51395 11 319 2.93E-88 T 29-03-2018 AM354_RS16640 9a3cc262ebaa78c3304f1fedbcba8281 334 PIRSF PIRSF006621 1 328 5.4E-102 T 29-03-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AM354_RS16640 9a3cc262ebaa78c3304f1fedbcba8281 334 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 3 319 1.7E-135 T 29-03-2018 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 AM354_RS16640 9a3cc262ebaa78c3304f1fedbcba8281 334 Gene3D G3DSA:3.20.20.70 6 246 3.0E-54 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS16640 9a3cc262ebaa78c3304f1fedbcba8281 334 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 94 112 - T 29-03-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 AM354_RS18845 77d5124346855d0f397d1d0125e41852 197 Pfam PF01725 Ham1 family 4 192 3.8E-57 T 29-03-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 Reactome: R-HSA-74259 AM354_RS18845 77d5124346855d0f397d1d0125e41852 197 SUPERFAMILY SSF52972 1 195 2.62E-73 T 29-03-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AM354_RS18845 77d5124346855d0f397d1d0125e41852 197 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 3 193 5.1E-67 T 29-03-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 Reactome: R-HSA-74259 AM354_RS18845 77d5124346855d0f397d1d0125e41852 197 Gene3D G3DSA:3.90.950.10 1 197 9.6E-81 T 29-03-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AM354_RS18845 77d5124346855d0f397d1d0125e41852 197 Hamap MF_01405 dITP/XTP pyrophosphatase [rdgB]. 2 196 50.478 T 29-03-2018 IPR020922 dITP/XTP pyrophosphatase GO:0009143|GO:0017111 AM354_RS01730 7ffedf5baa859956f1812ee554997045 576 SUPERFAMILY SSF52540 317 501 3.73E-35 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS01730 7ffedf5baa859956f1812ee554997045 576 SMART SM00382 29 236 7.5E-11 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS01730 7ffedf5baa859956f1812ee554997045 576 SMART SM00382 322 488 2.3E-7 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS01730 7ffedf5baa859956f1812ee554997045 576 Pfam PF00005 ABC transporter 317 443 1.6E-17 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS01730 7ffedf5baa859956f1812ee554997045 576 Pfam PF00005 ABC transporter 20 154 9.7E-25 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS01730 7ffedf5baa859956f1812ee554997045 576 Gene3D G3DSA:3.40.50.300 2 280 2.1E-46 T 29-03-2018 AM354_RS01730 7ffedf5baa859956f1812ee554997045 576 Gene3D G3DSA:3.40.50.300 303 555 2.0E-37 T 29-03-2018 AM354_RS01730 7ffedf5baa859956f1812ee554997045 576 SUPERFAMILY SSF52540 11 203 1.99E-42 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS01730 7ffedf5baa859956f1812ee554997045 576 ProSitePatterns PS00211 ABC transporters family signature. 415 429 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS03580 d01ddc303989f52d2e553c9ef3959884 415 SUPERFAMILY SSF48695 216 248 3.7E-5 T 29-03-2018 IPR011031 Multihaem cytochrome AM354_RS03580 d01ddc303989f52d2e553c9ef3959884 415 Pfam PF04403 Paraquat-inducible protein A 54 204 3.5E-39 T 29-03-2018 IPR007498 Paraquat-inducible protein A AM354_RS03580 d01ddc303989f52d2e553c9ef3959884 415 Pfam PF04403 Paraquat-inducible protein A 250 405 1.5E-46 T 29-03-2018 IPR007498 Paraquat-inducible protein A AM354_RS03580 d01ddc303989f52d2e553c9ef3959884 415 TIGRFAM TIGR00155 pqiA_fam: integral membrane protein, PqiA family 6 405 9.2E-169 T 29-03-2018 IPR005219 Conserved hypothetical protein CHP00155 AM354_RS21710 388b6c8fea5ad70b3aad44b8abe3c7af 87 Pfam PF17090 Uncharacterised protein family 22 85 4.9E-12 T 29-03-2018 IPR031381 Uncharacterised protein YtcA AM354_RS12910 47e3016042df1a9d2608feb75252110e 189 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 164 19.904 T 29-03-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 AM354_RS12910 47e3016042df1a9d2608feb75252110e 189 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 2 80 5.8E-32 T 29-03-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 AM354_RS12910 47e3016042df1a9d2608feb75252110e 189 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 4.3E-32 T 29-03-2018 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 AM354_RS12910 47e3016042df1a9d2608feb75252110e 189 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 4.3E-32 T 29-03-2018 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 AM354_RS12910 47e3016042df1a9d2608feb75252110e 189 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 4.3E-32 T 29-03-2018 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 AM354_RS08810 97b512a00c57f43f859fb41456844f12 109 Pfam PF02575 YbaB/EbfC DNA-binding family 11 99 5.8E-35 T 29-03-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family AM354_RS08810 97b512a00c57f43f859fb41456844f12 109 SUPERFAMILY SSF82607 11 103 4.05E-36 T 29-03-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family AM354_RS08810 97b512a00c57f43f859fb41456844f12 109 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 1 105 5.6E-42 T 29-03-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family AM354_RS08810 97b512a00c57f43f859fb41456844f12 109 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 5 98 23.277 T 29-03-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family AM354_RS08810 97b512a00c57f43f859fb41456844f12 109 Gene3D G3DSA:3.30.1310.10 1 109 7.9E-46 T 29-03-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family AM354_RS08810 97b512a00c57f43f859fb41456844f12 109 PIRSF PIRSF004555 3 109 6.1E-39 T 29-03-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family AM354_RS25215 6b5fc552735098b34b5d5bb913889b19 193 ProDom PD016592 ACTIVATOR TRANSCRIPTIONAL FLAGELLUM FLAGELLAR TRANSCRIPTION FLHC RNA DNA-BINDING REGULATION DNA-DIRECTED 1 193 5.0E-111 T 29-03-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 AM354_RS25215 6b5fc552735098b34b5d5bb913889b19 193 SUPERFAMILY SSF160930 5 161 1.44E-65 T 29-03-2018 AM354_RS25215 6b5fc552735098b34b5d5bb913889b19 193 Pfam PF05280 Flagellar transcriptional activator (FlhC) 1 173 2.7E-84 T 29-03-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 AM354_RS25215 6b5fc552735098b34b5d5bb913889b19 193 PIRSF PIRSF003159 1 182 6.1E-91 T 29-03-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 AM354_RS25215 6b5fc552735098b34b5d5bb913889b19 193 Hamap MF_01891 Flagellar transcriptional regulator FlhC [flhC]. 1 187 46.747 T 29-03-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 AM354_RS14890 b4bdb1875cf690d98c0d64cfd1515b9e 450 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 318 1.2E-67 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS14890 b4bdb1875cf690d98c0d64cfd1515b9e 450 Gene3D G3DSA:3.30.390.30 332 450 6.9E-37 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AM354_RS14890 b4bdb1875cf690d98c0d64cfd1515b9e 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 1.7E-28 T 29-03-2018 AM354_RS14890 b4bdb1875cf690d98c0d64cfd1515b9e 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 132 150 1.7E-28 T 29-03-2018 AM354_RS14890 b4bdb1875cf690d98c0d64cfd1515b9e 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 283 305 1.7E-28 T 29-03-2018 AM354_RS14890 b4bdb1875cf690d98c0d64cfd1515b9e 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 254 270 1.7E-28 T 29-03-2018 AM354_RS14890 b4bdb1875cf690d98c0d64cfd1515b9e 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 169 187 1.7E-28 T 29-03-2018 AM354_RS14890 b4bdb1875cf690d98c0d64cfd1515b9e 450 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 339 449 1.2E-33 T 29-03-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AM354_RS14890 b4bdb1875cf690d98c0d64cfd1515b9e 450 Gene3D G3DSA:3.40.50.720 166 331 3.4E-34 T 29-03-2018 AM354_RS14890 b4bdb1875cf690d98c0d64cfd1515b9e 450 SUPERFAMILY SSF55424 336 450 1.22E-34 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AM354_RS14890 b4bdb1875cf690d98c0d64cfd1515b9e 450 Gene3D G3DSA:3.50.50.60 1 165 2.5E-30 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS14890 b4bdb1875cf690d98c0d64cfd1515b9e 450 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 29-03-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 AM354_RS14890 b4bdb1875cf690d98c0d64cfd1515b9e 450 SUPERFAMILY SSF51905 1 359 1.58E-54 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS14890 b4bdb1875cf690d98c0d64cfd1515b9e 450 PIRSF PIRSF000350 1 447 2.0E-83 T 29-03-2018 AM354_RS14890 b4bdb1875cf690d98c0d64cfd1515b9e 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 169 194 6.8E-65 T 29-03-2018 AM354_RS14890 b4bdb1875cf690d98c0d64cfd1515b9e 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 335 356 6.8E-65 T 29-03-2018 AM354_RS14890 b4bdb1875cf690d98c0d64cfd1515b9e 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 255 269 6.8E-65 T 29-03-2018 AM354_RS14890 b4bdb1875cf690d98c0d64cfd1515b9e 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 298 305 6.8E-65 T 29-03-2018 AM354_RS14890 b4bdb1875cf690d98c0d64cfd1515b9e 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 135 144 6.8E-65 T 29-03-2018 AM354_RS14890 b4bdb1875cf690d98c0d64cfd1515b9e 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 424 444 6.8E-65 T 29-03-2018 AM354_RS14890 b4bdb1875cf690d98c0d64cfd1515b9e 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 402 417 6.8E-65 T 29-03-2018 AM354_RS14890 b4bdb1875cf690d98c0d64cfd1515b9e 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 6.8E-65 T 29-03-2018 AM354_RS14890 b4bdb1875cf690d98c0d64cfd1515b9e 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 6.8E-65 T 29-03-2018 AM354_RS14890 b4bdb1875cf690d98c0d64cfd1515b9e 450 TIGRFAM TIGR01421 gluta_reduc_1: glutathione-disulfide reductase 3 450 1.1E-219 T 29-03-2018 IPR006322 Glutathione reductase, eukaryote/bacterial GO:0004362|GO:0006749|GO:0050660|GO:0050661|GO:0055114 KEGG: 00480+1.8.1.7|MetaCyc: PWY-4081|Reactome: R-HSA-2408550|Reactome: R-HSA-3299685|Reactome: R-HSA-499943|Reactome: R-HSA-5628897 AM354_RS04300 f6020d702192ad0aae5efcf919eece3c 206 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 135 168 3.3E-10 T 29-03-2018 IPR001451 Hexapeptide repeat AM354_RS04300 f6020d702192ad0aae5efcf919eece3c 206 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 90 125 6.6E-6 T 29-03-2018 IPR001451 Hexapeptide repeat AM354_RS04300 f6020d702192ad0aae5efcf919eece3c 206 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 143 171 - T 29-03-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AM354_RS04300 f6020d702192ad0aae5efcf919eece3c 206 Gene3D G3DSA:2.160.10.10 20 205 1.5E-32 T 29-03-2018 AM354_RS04300 f6020d702192ad0aae5efcf919eece3c 206 SUPERFAMILY SSF51161 75 186 7.9E-40 T 29-03-2018 IPR011004 Trimeric LpxA-like AM354_RS16260 fb915b059c27cfa82613965aed6d744b 213 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 9 209 2.8E-86 T 29-03-2018 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 AM354_RS16260 fb915b059c27cfa82613965aed6d744b 213 Gene3D G3DSA:3.20.20.70 1 213 1.5E-30 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS16260 fb915b059c27cfa82613965aed6d744b 213 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 128 141 - T 29-03-2018 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 AM354_RS16260 fb915b059c27cfa82613965aed6d744b 213 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 40 49 - T 29-03-2018 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 AM354_RS16260 fb915b059c27cfa82613965aed6d744b 213 Pfam PF01081 KDPG and KHG aldolase 9 203 1.2E-89 T 29-03-2018 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 AM354_RS16260 fb915b059c27cfa82613965aed6d744b 213 SUPERFAMILY SSF51569 4 209 1.5E-69 T 29-03-2018 AM354_RS14510 5c09d1e8e8e4543b4de2b34d24fbc363 255 SUPERFAMILY SSF51351 1 249 1.18E-91 T 29-03-2018 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS14510 5c09d1e8e8e4543b4de2b34d24fbc363 255 Gene3D G3DSA:3.20.20.70 1 255 7.1E-102 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS14510 5c09d1e8e8e4543b4de2b34d24fbc363 255 ProSitePatterns PS00171 Triosephosphate isomerase active site. 165 175 - T 29-03-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS14510 5c09d1e8e8e4543b4de2b34d24fbc363 255 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 5 240 3.5E-95 T 29-03-2018 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS14510 5c09d1e8e8e4543b4de2b34d24fbc363 255 Pfam PF00121 Triosephosphate isomerase 5 246 9.7E-94 T 29-03-2018 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS14510 5c09d1e8e8e4543b4de2b34d24fbc363 255 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 249 40.488 T 29-03-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM354_RS03765 2a12fae95962a09d69f03fa2ce1eb108 498 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 295 306 - T 29-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AM354_RS03765 2a12fae95962a09d69f03fa2ce1eb108 498 Pfam PF00171 Aldehyde dehydrogenase family 33 492 4.6E-170 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM354_RS03765 2a12fae95962a09d69f03fa2ce1eb108 498 Gene3D G3DSA:3.40.605.10 6 282 2.1E-97 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM354_RS03765 2a12fae95962a09d69f03fa2ce1eb108 498 SUPERFAMILY SSF53720 5 496 7.07E-167 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM354_RS03765 2a12fae95962a09d69f03fa2ce1eb108 498 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 266 273 - T 29-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AM354_RS03765 2a12fae95962a09d69f03fa2ce1eb108 498 Gene3D G3DSA:3.40.309.10 283 479 2.9E-70 T 29-03-2018 AM354_RS19515 a1b16ff90ae6160ad18f2f6576577115 226 SMART SM00895 93 217 1.6E-17 T 29-03-2018 IPR011711 GntR, C-terminal AM354_RS19515 a1b16ff90ae6160ad18f2f6576577115 226 SUPERFAMILY SSF48008 89 223 1.73E-27 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM354_RS19515 a1b16ff90ae6160ad18f2f6576577115 226 SMART SM00345 25 83 1.3E-9 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS19515 a1b16ff90ae6160ad18f2f6576577115 226 Pfam PF07729 FCD domain 93 215 8.4E-30 T 29-03-2018 IPR011711 GntR, C-terminal AM354_RS19515 a1b16ff90ae6160ad18f2f6576577115 226 Gene3D G3DSA:1.10.10.10 2 79 7.8E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS19515 a1b16ff90ae6160ad18f2f6576577115 226 Gene3D G3DSA:1.20.120.530 80 225 7.2E-35 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM354_RS19515 a1b16ff90ae6160ad18f2f6576577115 226 Pfam PF00392 Bacterial regulatory proteins, gntR family 25 83 3.9E-11 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS19515 a1b16ff90ae6160ad18f2f6576577115 226 SUPERFAMILY SSF46785 18 87 2.96E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS24580 6f287d9e5dc8e969f9cf5f7ecffea0cf 329 Pfam PF00248 Aldo/keto reductase family 16 308 9.4E-76 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS24580 6f287d9e5dc8e969f9cf5f7ecffea0cf 329 SUPERFAMILY SSF51430 1 314 3.54E-101 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS24580 6f287d9e5dc8e969f9cf5f7ecffea0cf 329 Gene3D G3DSA:3.20.20.100 1 328 8.3E-106 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS04285 497b5e5f000c5a6786acdda1a1832382 415 Pfam PF12704 MacB-like periplasmic core domain 28 239 1.3E-14 T 29-03-2018 IPR025857 MacB-like periplasmic core domain AM354_RS04285 497b5e5f000c5a6786acdda1a1832382 415 Gene3D G3DSA:1.20.1250.20 1 407 0.028 T 29-03-2018 AM354_RS04285 497b5e5f000c5a6786acdda1a1832382 415 Pfam PF02687 FtsX-like permease family 302 408 1.8E-13 T 29-03-2018 IPR003838 ABC transporter permease protein domain GO:0016020 AM354_RS04285 497b5e5f000c5a6786acdda1a1832382 415 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 6 414 6.9E-158 T 29-03-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 AM354_RS04285 497b5e5f000c5a6786acdda1a1832382 415 TIGRFAM TIGR02213 lolE_release: lipoprotein releasing system, transmembrane protein LolE 5 415 2.2E-220 T 29-03-2018 IPR011926 Lipoprotein-releasing system transmembrane protein LolC/E, gammaproteobacteria type GO:0006810|GO:0009276|GO:0016021 AM354_RS07750 c2a614f46310f3d7bdc4e805544bbf88 424 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 244 281 - T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM354_RS07750 c2a614f46310f3d7bdc4e805544bbf88 424 Pfam PF00202 Aminotransferase class-III 29 416 5.3E-130 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM354_RS07750 c2a614f46310f3d7bdc4e805544bbf88 424 SUPERFAMILY SSF53383 5 422 6.54E-137 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS07750 c2a614f46310f3d7bdc4e805544bbf88 424 Gene3D G3DSA:3.90.1150.10 180 261 0.03 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS07750 c2a614f46310f3d7bdc4e805544bbf88 424 Gene3D G3DSA:3.90.1150.10 262 424 1.8E-45 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS07750 c2a614f46310f3d7bdc4e805544bbf88 424 Hamap MF_00834 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [bioA]. 3 424 50.906 T 29-03-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 AM354_RS07750 c2a614f46310f3d7bdc4e805544bbf88 424 PIRSF PIRSF000521 28 139 3.2E-7 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM354_RS07750 c2a614f46310f3d7bdc4e805544bbf88 424 PIRSF PIRSF000521 129 422 7.6E-25 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM354_RS07750 c2a614f46310f3d7bdc4e805544bbf88 424 Gene3D G3DSA:3.90.1150.10 2 179 6.5E-46 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS07750 c2a614f46310f3d7bdc4e805544bbf88 424 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 15 422 3.5E-185 T 29-03-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 AM354_RS12220 b4717f8913638cad162484e8a690de7d 223 Pfam PF04225 Opacity-associated protein A LysM-like domain 138 223 4.9E-32 T 29-03-2018 IPR007340 Opacity-associated protein A AM354_RS12220 b4717f8913638cad162484e8a690de7d 223 Pfam PF08525 Opacity-associated protein A N-terminal motif 72 99 3.3E-9 T 29-03-2018 IPR013731 Opacity-associated protein A, N-terminal AM354_RS12220 b4717f8913638cad162484e8a690de7d 223 Gene3D G3DSA:3.10.350.10 127 209 2.7E-4 T 29-03-2018 AM354_RS05460 926afcd71b847291e9914e6a63399afd 172 SUPERFAMILY SSF54637 4 169 9.12E-56 T 29-03-2018 IPR029069 HotDog domain AM354_RS05460 926afcd71b847291e9914e6a63399afd 172 Pfam PF07977 FabA-like domain 29 158 3.2E-53 T 29-03-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AM354_RS05460 926afcd71b847291e9914e6a63399afd 172 Hamap MF_00405 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase [fabA]. 2 172 50.981 T 29-03-2018 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AM354_RS05460 926afcd71b847291e9914e6a63399afd 172 TIGRFAM TIGR01749 fabA: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA 4 171 6.8E-93 T 29-03-2018 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AM354_RS05460 926afcd71b847291e9914e6a63399afd 172 Gene3D G3DSA:3.10.129.10 1 172 5.2E-50 T 29-03-2018 AM354_RS20325 6a1997f09c26e77e36baeb141dbc5688 227 Pfam PF17185 NlpE C-terminal OB domain 136 225 2.0E-37 T 29-03-2018 IPR033450 NlpE, C-terminal OB domain AM354_RS20325 6a1997f09c26e77e36baeb141dbc5688 227 Pfam PF04170 NlpE N-terminal domain 38 123 1.1E-25 T 29-03-2018 IPR007298 Copper resistance lipoprotein NlpE AM354_RS07055 b5315f44ec399df5fc27ca968d4263c8 181 SUPERFAMILY SSF54909 2 95 4.7E-19 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel AM354_RS07055 b5315f44ec399df5fc27ca968d4263c8 181 Pfam PF03992 Antibiotic biosynthesis monooxygenase 7 81 3.3E-6 T 29-03-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain AM354_RS07055 b5315f44ec399df5fc27ca968d4263c8 181 Gene3D G3DSA:3.30.70.100 2 96 3.0E-14 T 29-03-2018 AM354_RS20115 351b03e95986f927e2991f99890741c1 281 PIRSF PIRSF004750 6 281 3.1E-126 T 29-03-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 AM354_RS20115 351b03e95986f927e2991f99890741c1 281 SUPERFAMILY SSF55620 185 266 2.15E-10 T 29-03-2018 AM354_RS20115 351b03e95986f927e2991f99890741c1 281 Pfam PF14489 QueF-like protein 195 268 2.5E-27 T 29-03-2018 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 AM354_RS20115 351b03e95986f927e2991f99890741c1 281 Gene3D G3DSA:3.30.1130.10 144 281 2.3E-48 T 29-03-2018 AM354_RS20115 351b03e95986f927e2991f99890741c1 281 TIGRFAM TIGR03138 QueF: queuine synthase 10 281 3.5E-127 T 29-03-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 AM354_RS20115 351b03e95986f927e2991f99890741c1 281 Pfam PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term 21 131 1.5E-48 T 29-03-2018 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 AM354_RS20115 351b03e95986f927e2991f99890741c1 281 Gene3D G3DSA:3.30.1130.10 21 136 8.9E-41 T 29-03-2018 AM354_RS20115 351b03e95986f927e2991f99890741c1 281 Hamap MF_00817 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 281 166.465 T 29-03-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 AM354_RS16140 a0d8c4beb5e0643a39150cc0836404e9 124 Pfam PF09350 Domain of unknown function (DUF1992) 7 72 3.0E-23 T 29-03-2018 IPR018961 DnaJ homologue, subfamily C, member 28, conserved domain AM354_RS12955 88191e985066a8486691d62359287215 275 Pfam PF01738 Dienelactone hydrolase family 50 272 3.1E-74 T 29-03-2018 IPR002925 Dienelactone hydrolase GO:0016787 AM354_RS12955 88191e985066a8486691d62359287215 275 SUPERFAMILY SSF53474 40 272 1.1E-51 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS12955 88191e985066a8486691d62359287215 275 Gene3D G3DSA:3.40.50.1820 32 272 5.9E-45 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS07030 f9b2d108c11fe746b20cc883a086334a 309 SUPERFAMILY SSF53850 28 307 3.47E-59 T 29-03-2018 AM354_RS07030 f9b2d108c11fe746b20cc883a086334a 309 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 28 303 6.1E-57 T 29-03-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 AM354_RS07030 f9b2d108c11fe746b20cc883a086334a 309 Gene3D G3DSA:3.40.190.10 180 306 8.7E-16 T 29-03-2018 AM354_RS07030 f9b2d108c11fe746b20cc883a086334a 309 Gene3D G3DSA:3.40.190.10 18 179 4.8E-27 T 29-03-2018 AM354_RS23485 5f140cc63ea7096161bf7feb4028a357 341 Pfam PF03916 Polysulphide reductase, NrfD 11 291 2.9E-32 T 29-03-2018 IPR005614 NrfD family AM354_RS23485 5f140cc63ea7096161bf7feb4028a357 341 Gene3D G3DSA:1.20.1630.10 9 294 7.4E-39 T 29-03-2018 AM354_RS18630 15c7e130125cf755598356a3b7ed7dcd 492 Pfam PF00916 Sulfate permease family 15 144 1.2E-27 T 29-03-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 AM354_RS18630 15c7e130125cf755598356a3b7ed7dcd 492 Pfam PF00916 Sulfate permease family 163 343 2.1E-28 T 29-03-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 AM354_RS18630 15c7e130125cf755598356a3b7ed7dcd 492 Gene3D G3DSA:3.30.750.24 381 487 6.6E-16 T 29-03-2018 IPR002645 STAS domain AM354_RS18630 15c7e130125cf755598356a3b7ed7dcd 492 Pfam PF01740 STAS domain 396 483 1.4E-10 T 29-03-2018 IPR002645 STAS domain AM354_RS18630 15c7e130125cf755598356a3b7ed7dcd 492 SUPERFAMILY SSF52091 388 481 1.53E-13 T 29-03-2018 IPR002645 STAS domain AM354_RS12530 809c4b883715c3045b108eed84906db2 401 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 132 395 3.0E-89 T 29-03-2018 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 AM354_RS12530 809c4b883715c3045b108eed84906db2 401 Pfam PF00425 chorismate binding enzyme 134 388 1.2E-73 T 29-03-2018 IPR015890 Chorismate-utilising enzyme, C-terminal AM354_RS12530 809c4b883715c3045b108eed84906db2 401 SUPERFAMILY SSF56322 32 398 9.29E-92 T 29-03-2018 IPR005801 ADC synthase GO:0009058 AM354_RS12530 809c4b883715c3045b108eed84906db2 401 Gene3D G3DSA:3.60.120.10 7 399 1.7E-100 T 29-03-2018 IPR005801 ADC synthase GO:0009058 AM354_RS22190 851e1accc6b4f613eef81cd68b244c97 133 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 60 126 8.8E-16 T 29-03-2018 AM354_RS22190 851e1accc6b4f613eef81cd68b244c97 133 Gene3D G3DSA:3.30.1380.10 4 126 7.2E-23 T 29-03-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AM354_RS22190 851e1accc6b4f613eef81cd68b244c97 133 SUPERFAMILY SSF55166 6 126 1.12E-25 T 29-03-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AM354_RS08905 fe50ae5406462e522e3982962e4c6918 476 SUPERFAMILY SSF81296 22 190 1.36E-57 T 29-03-2018 IPR014756 Immunoglobulin E-set AM354_RS08905 fe50ae5406462e522e3982962e4c6918 476 Gene3D G3DSA:2.60.40.10 226 357 7.1E-4 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS08905 fe50ae5406462e522e3982962e4c6918 476 Gene3D G3DSA:2.70.50.50 22 190 1.1E-51 T 29-03-2018 AM354_RS08905 fe50ae5406462e522e3982962e4c6918 476 Pfam PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading 22 187 5.8E-32 T 29-03-2018 IPR004302 Cellulose/chitin-binding protein, N-terminal AM354_RS03535 b749c68a6d044b314908cb7fa936ada4 378 Pfam PF08402 TOBE domain 303 375 1.0E-10 T 29-03-2018 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 AM354_RS03535 b749c68a6d044b314908cb7fa936ada4 378 SMART SM00382 52 236 7.7E-20 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS03535 b749c68a6d044b314908cb7fa936ada4 378 Gene3D G3DSA:3.40.50.300 26 282 8.4E-71 T 29-03-2018 AM354_RS03535 b749c68a6d044b314908cb7fa936ada4 378 Gene3D G3DSA:2.40.50.140 306 369 3.6E-6 T 29-03-2018 AM354_RS03535 b749c68a6d044b314908cb7fa936ada4 378 SUPERFAMILY SSF50331 262 376 9.92E-12 T 29-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal AM354_RS03535 b749c68a6d044b314908cb7fa936ada4 378 SUPERFAMILY SSF52540 28 267 1.1E-80 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS03535 b749c68a6d044b314908cb7fa936ada4 378 TIGRFAM TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT 24 377 3.4E-162 T 29-03-2018 IPR017662 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT GO:0005524|GO:0006810|GO:0016020 AM354_RS03535 b749c68a6d044b314908cb7fa936ada4 378 ProSitePatterns PS00211 ABC transporters family signature. 158 172 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS03535 b749c68a6d044b314908cb7fa936ada4 378 Pfam PF00005 ABC transporter 43 185 9.4E-34 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS12905 a0e000f5eea2dfa5cc0da760cf5fc86f 256 Pfam PF00902 Sec-independent protein translocase protein (TatC) 12 221 2.9E-65 T 29-03-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AM354_RS12905 a0e000f5eea2dfa5cc0da760cf5fc86f 256 ProSitePatterns PS01218 TatC family signature. 154 173 - T 29-03-2018 IPR019820 Sec-independent periplasmic protein translocase, conserved site AM354_RS12905 a0e000f5eea2dfa5cc0da760cf5fc86f 256 Gene3D G3DSA:1.20.1250.20 5 253 4.4E-6 T 29-03-2018 AM354_RS12905 a0e000f5eea2dfa5cc0da760cf5fc86f 256 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 4 241 18.16 T 29-03-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AM354_RS12905 a0e000f5eea2dfa5cc0da760cf5fc86f 256 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 9 226 6.0E-78 T 29-03-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AM354_RS12905 a0e000f5eea2dfa5cc0da760cf5fc86f 256 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 85 103 1.1E-49 T 29-03-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AM354_RS12905 a0e000f5eea2dfa5cc0da760cf5fc86f 256 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 8 35 1.1E-49 T 29-03-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AM354_RS12905 a0e000f5eea2dfa5cc0da760cf5fc86f 256 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 103 129 1.1E-49 T 29-03-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AM354_RS12905 a0e000f5eea2dfa5cc0da760cf5fc86f 256 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 154 182 1.1E-49 T 29-03-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AM354_RS17775 c9f63c0f5d8abedff454e4804d949ada 583 Gene3D G3DSA:3.40.50.300 1 294 2.0E-64 T 29-03-2018 AM354_RS17775 c9f63c0f5d8abedff454e4804d949ada 583 TIGRFAM TIGR00345 GET3_arsA_TRC40: transport-energizing ATPase, TRC40/GET3/ArsA family 12 294 4.6E-97 T 29-03-2018 IPR016300 Arsenical pump ATPase, ArsA/GET3 GO:0005524|GO:0016887 Reactome: R-HSA-381038 AM354_RS17775 c9f63c0f5d8abedff454e4804d949ada 583 Gene3D G3DSA:3.40.50.300 311 582 3.8E-47 T 29-03-2018 AM354_RS17775 c9f63c0f5d8abedff454e4804d949ada 583 SUPERFAMILY SSF52540 7 290 1.61E-52 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS17775 c9f63c0f5d8abedff454e4804d949ada 583 PIRSF PIRSF001327 1 583 1.7E-265 T 29-03-2018 IPR027541 Arsenical pump-driving ATPase GO:0005524|GO:0015446|GO:0016887|GO:0071722 MetaCyc: PWY-4621 AM354_RS17775 c9f63c0f5d8abedff454e4804d949ada 583 SUPERFAMILY SSF52540 326 575 3.03E-45 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS17775 c9f63c0f5d8abedff454e4804d949ada 583 Pfam PF02374 Anion-transporting ATPase 483 581 1.2E-6 T 29-03-2018 IPR025723 Anion-transporting ATPase-like domain Reactome: R-HSA-381038 AM354_RS17775 c9f63c0f5d8abedff454e4804d949ada 583 Pfam PF02374 Anion-transporting ATPase 10 292 2.3E-89 T 29-03-2018 IPR025723 Anion-transporting ATPase-like domain Reactome: R-HSA-381038 AM354_RS17775 c9f63c0f5d8abedff454e4804d949ada 583 Pfam PF02374 Anion-transporting ATPase 329 476 6.2E-32 T 29-03-2018 IPR025723 Anion-transporting ATPase-like domain Reactome: R-HSA-381038 AM354_RS17775 c9f63c0f5d8abedff454e4804d949ada 583 TIGRFAM TIGR04291 arsen_driv_ArsA: arsenical pump-driving ATPase 7 570 7.7E-286 T 29-03-2018 IPR027541 Arsenical pump-driving ATPase GO:0005524|GO:0015446|GO:0016887|GO:0071722 MetaCyc: PWY-4621 AM354_RS22060 a0d241b8b557d16a96a1934fc4689262 189 PIRSF PIRSF028103 5 180 4.3E-65 T 29-03-2018 IPR016867 Glycine cleavage system transcriptional repressor GO:0006355 AM354_RS22060 a0d241b8b557d16a96a1934fc4689262 189 Pfam PF13740 ACT domain 7 82 8.3E-26 T 29-03-2018 AM354_RS22060 a0d241b8b557d16a96a1934fc4689262 189 SUPERFAMILY SSF55021 91 179 1.3E-17 T 29-03-2018 AM354_RS22060 a0d241b8b557d16a96a1934fc4689262 189 Gene3D G3DSA:3.30.70.260 8 89 4.0E-12 T 29-03-2018 AM354_RS22060 a0d241b8b557d16a96a1934fc4689262 189 Gene3D G3DSA:3.30.70.260 93 180 1.6E-11 T 29-03-2018 AM354_RS22060 a0d241b8b557d16a96a1934fc4689262 189 SUPERFAMILY SSF55021 6 87 4.96E-17 T 29-03-2018 AM354_RS11160 f6b05b7fcb4ee88fa7a9855570fc9315 398 SUPERFAMILY SSF103473 17 390 3.01E-26 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS11160 f6b05b7fcb4ee88fa7a9855570fc9315 398 Gene3D G3DSA:1.20.1250.20 202 396 1.1E-13 T 29-03-2018 AM354_RS11160 f6b05b7fcb4ee88fa7a9855570fc9315 398 Pfam PF07690 Major Facilitator Superfamily 218 385 1.1E-9 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS11160 f6b05b7fcb4ee88fa7a9855570fc9315 398 Gene3D G3DSA:1.20.1250.20 1 194 2.6E-8 T 29-03-2018 AM354_RS23555 c4a3f6ef2980aaca5cce51a24225170c 603 Gene3D G3DSA:3.90.76.10 65 204 2.2E-25 T 29-03-2018 AM354_RS23555 c4a3f6ef2980aaca5cce51a24225170c 603 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 99 505 9.7E-69 T 29-03-2018 IPR000914 Solute-binding protein family 5 domain AM354_RS23555 c4a3f6ef2980aaca5cce51a24225170c 603 Gene3D G3DSA:3.10.105.10 317 562 5.6E-45 T 29-03-2018 AM354_RS23555 c4a3f6ef2980aaca5cce51a24225170c 603 SUPERFAMILY SSF53850 50 592 6.15E-109 T 29-03-2018 AM354_RS23555 c4a3f6ef2980aaca5cce51a24225170c 603 PIRSF PIRSF002741 6 594 1.8E-136 T 29-03-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AM354_RS23555 c4a3f6ef2980aaca5cce51a24225170c 603 Gene3D G3DSA:3.40.190.10 205 316 5.3E-18 T 29-03-2018 AM354_RS04140 c93617a9a099800967e6470744639fb9 379 Gene3D G3DSA:1.10.443.10 194 374 1.2E-18 T 29-03-2018 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM354_RS04140 c93617a9a099800967e6470744639fb9 379 Gene3D G3DSA:1.10.150.130 76 193 1.5E-9 T 29-03-2018 IPR023109 Integrase/recombinase, N-terminal AM354_RS04140 c93617a9a099800967e6470744639fb9 379 Pfam PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain 1 71 4.5E-31 T 29-03-2018 IPR015094 Integrase, lambda-type, N-terminal DNA-binding GO:0003677|GO:0008907|GO:0015074 AM354_RS04140 c93617a9a099800967e6470744639fb9 379 SUPERFAMILY SSF56349 82 365 5.0E-45 T 29-03-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AM354_RS04140 c93617a9a099800967e6470744639fb9 379 Pfam PF00589 Phage integrase family 193 364 1.3E-14 T 29-03-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM354_RS04140 c93617a9a099800967e6470744639fb9 379 Gene3D G3DSA:3.30.160.60 1 62 1.7E-17 T 29-03-2018 AM354_RS25095 914d2c6d7aed4da8a56e0b9f98bb660a 501 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 19 493 8.6E-225 T 29-03-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath AM354_RS25095 914d2c6d7aed4da8a56e0b9f98bb660a 501 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 69 493 1.3E-193 T 29-03-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath AM354_RS08840 d3dfde9baf4b5a14513e7ff4d77bd334 117 Pfam PF02635 DsrE/DsrF-like family 4 117 1.4E-20 T 29-03-2018 IPR003787 Sulphur relay, DsrE/F-like protein AM354_RS08840 d3dfde9baf4b5a14513e7ff4d77bd334 117 SUPERFAMILY SSF75169 1 117 5.36E-32 T 29-03-2018 IPR027396 DsrEFH-like AM354_RS08840 d3dfde9baf4b5a14513e7ff4d77bd334 117 Gene3D G3DSA:3.40.1260.10 1 117 4.2E-27 T 29-03-2018 AM354_RS08100 068a010bf0faeb8053ed4100bb85422e 318 Pfam PF04463 Protein of unknown function (DUF523) 7 149 1.1E-37 T 29-03-2018 IPR007553 Domain of unknown function DUF523 AM354_RS08100 068a010bf0faeb8053ed4100bb85422e 318 Pfam PF08349 Protein of unknown function (DUF1722) 192 309 2.7E-43 T 29-03-2018 IPR013560 Domain of unknown function DUF1722 AM354_RS08100 068a010bf0faeb8053ed4100bb85422e 318 PIRSF PIRSF037004 1 318 6.4E-133 T 29-03-2018 IPR017087 Uncharacterised conserved protein UCP037004 AM354_RS18430 2813d2059f663b83062dcbaedf897368 491 TIGRFAM TIGR03755 conj_TIGR03755: integrating conjugative element protein, PFL_4711 family 64 486 6.5E-167 T 29-03-2018 IPR021204 Integrating conjugative element protein, PFL4711 AM354_RS13700 004886ca2195bca9f559473512eae138 488 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 74 4.5E-14 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS13700 004886ca2195bca9f559473512eae138 488 Gene3D G3DSA:1.10.10.10 4 76 2.3E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS13700 004886ca2195bca9f559473512eae138 488 SUPERFAMILY SSF46785 9 77 1.61E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS13700 004886ca2195bca9f559473512eae138 488 Gene3D G3DSA:3.90.1150.10 381 478 1.9E-22 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS13700 004886ca2195bca9f559473512eae138 488 SUPERFAMILY SSF53383 111 471 2.61E-80 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS13700 004886ca2195bca9f559473512eae138 488 Gene3D G3DSA:3.40.640.10 135 380 1.5E-41 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS13700 004886ca2195bca9f559473512eae138 488 SMART SM00345 15 74 3.5E-15 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS13700 004886ca2195bca9f559473512eae138 488 Pfam PF00155 Aminotransferase class I and II 149 467 1.1E-25 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM354_RS21415 19b795363aa898b0614ca2cf98c91907 198 SMART SM00530 104 157 0.0019 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM354_RS21415 19b795363aa898b0614ca2cf98c91907 198 SUPERFAMILY SSF47413 113 153 7.37E-6 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS21415 19b795363aa898b0614ca2cf98c91907 198 Gene3D G3DSA:1.10.10.60 71 121 0.077 T 29-03-2018 AM354_RS21415 19b795363aa898b0614ca2cf98c91907 198 Gene3D G3DSA:1.10.260.40 1 70 0.011 T 29-03-2018 AM354_RS21415 19b795363aa898b0614ca2cf98c91907 198 Gene3D G3DSA:1.10.260.40 122 197 9.2E-6 T 29-03-2018 AM354_RS21415 19b795363aa898b0614ca2cf98c91907 198 Pfam PF01381 Helix-turn-helix 113 153 1.0E-5 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM354_RS00855 4bae519db35501010e3abb295c8d202e 206 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 7 200 1.6E-73 T 29-03-2018 IPR006070 YrdC-like domain GO:0003725 AM354_RS00855 4bae519db35501010e3abb295c8d202e 206 SUPERFAMILY SSF55821 1 203 6.1E-66 T 29-03-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain AM354_RS00855 4bae519db35501010e3abb295c8d202e 206 Pfam PF01300 Telomere recombination 23 198 4.6E-46 T 29-03-2018 IPR006070 YrdC-like domain GO:0003725 AM354_RS00855 4bae519db35501010e3abb295c8d202e 206 Gene3D G3DSA:3.90.870.10 1 205 5.5E-61 T 29-03-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain AM354_RS21060 071fd5906325dab0b0ef4e1c18a128ad 86 Gene3D G3DSA:3.30.70.20 2 84 2.8E-16 T 29-03-2018 AM354_RS21060 071fd5906325dab0b0ef4e1c18a128ad 86 SUPERFAMILY SSF54862 5 66 5.18E-18 T 29-03-2018 AM354_RS21060 071fd5906325dab0b0ef4e1c18a128ad 86 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 29-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM354_RS21060 071fd5906325dab0b0ef4e1c18a128ad 86 Pfam PF12838 4Fe-4S dicluster domain 8 56 3.9E-7 T 29-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM354_RS03230 148b2c0506e1ba14ff54be87048fe93e 118 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 1 116 8.3E-44 T 29-03-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 AM354_RS03230 148b2c0506e1ba14ff54be87048fe93e 118 Pfam PF03061 Thioesterase superfamily 31 108 5.9E-15 T 29-03-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AM354_RS03230 148b2c0506e1ba14ff54be87048fe93e 118 Gene3D G3DSA:3.10.129.10 1 118 1.5E-24 T 29-03-2018 AM354_RS03230 148b2c0506e1ba14ff54be87048fe93e 118 SUPERFAMILY SSF54637 2 118 3.18E-30 T 29-03-2018 IPR029069 HotDog domain AM354_RS12935 9d56d469555e774e9b640bd42faca5d6 515 Pfam PF02646 RmuC family 171 467 2.5E-105 T 29-03-2018 IPR003798 DNA recombination RmuC AM354_RS12935 9d56d469555e774e9b640bd42faca5d6 515 Gene3D G3DSA:1.20.5.340 182 333 3.0E-22 T 29-03-2018 AM354_RS21145 4bb359a7bb3a7d2b03c04aa76a684912 487 Gene3D G3DSA:3.40.605.10 7 268 2.4E-94 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM354_RS21145 4bb359a7bb3a7d2b03c04aa76a684912 487 SUPERFAMILY SSF53720 11 482 2.09E-150 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM354_RS21145 4bb359a7bb3a7d2b03c04aa76a684912 487 Gene3D G3DSA:3.40.309.10 269 465 2.2E-62 T 29-03-2018 AM354_RS21145 4bb359a7bb3a7d2b03c04aa76a684912 487 Pfam PF00171 Aldehyde dehydrogenase family 25 479 1.3E-156 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM354_RS21145 4bb359a7bb3a7d2b03c04aa76a684912 487 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 254 261 - T 29-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AM354_RS22410 fc07c51a393491a068cdeb1c9ff51548 528 PIRSF PIRSF002741 16 528 5.0E-109 T 29-03-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AM354_RS22410 fc07c51a393491a068cdeb1c9ff51548 528 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 66 445 2.1E-96 T 29-03-2018 IPR000914 Solute-binding protein family 5 domain AM354_RS22410 fc07c51a393491a068cdeb1c9ff51548 528 Gene3D G3DSA:3.40.190.10 197 292 1.4E-28 T 29-03-2018 AM354_RS22410 fc07c51a393491a068cdeb1c9ff51548 528 SUPERFAMILY SSF53850 22 526 1.47E-148 T 29-03-2018 AM354_RS22410 fc07c51a393491a068cdeb1c9ff51548 528 Gene3D G3DSA:3.90.76.10 31 196 3.4E-33 T 29-03-2018 AM354_RS22410 fc07c51a393491a068cdeb1c9ff51548 528 Gene3D G3DSA:3.10.105.10 293 499 1.4E-61 T 29-03-2018 AM354_RS24050 71f0b6d428d8fb093f6b8197dc13762f 298 Pfam PF06958 S-type Pyocin 16 155 9.2E-34 T 29-03-2018 IPR016128 Pyosin/cloacin translocation domain GO:0009405 AM354_RS24050 71f0b6d428d8fb093f6b8197dc13762f 298 SUPERFAMILY SSF69369 1 190 5.23E-34 T 29-03-2018 IPR016128 Pyosin/cloacin translocation domain GO:0009405 AM354_RS09710 5667b9da37f6d406b5d212c77444f2aa 485 SMART SM00387 347 458 4.5E-22 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS09710 5667b9da37f6d406b5d212c77444f2aa 485 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 348 450 1.7E-16 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS09710 5667b9da37f6d406b5d212c77444f2aa 485 TIGRFAM TIGR01386 cztS_silS_copS: heavy metal sensor kinase 3 454 2.5E-120 T 29-03-2018 IPR006290 Heavy metal sensor kinase GO:0000160|GO:0004673|GO:0016020 AM354_RS09710 5667b9da37f6d406b5d212c77444f2aa 485 SMART SM00388 238 304 4.0E-16 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS09710 5667b9da37f6d406b5d212c77444f2aa 485 Pfam PF00512 His Kinase A (phospho-acceptor) domain 239 303 1.5E-14 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS09710 5667b9da37f6d406b5d212c77444f2aa 485 Gene3D G3DSA:3.30.565.10 318 476 3.3E-28 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS09710 5667b9da37f6d406b5d212c77444f2aa 485 Gene3D G3DSA:1.10.287.130 228 300 7.8E-13 T 29-03-2018 AM354_RS09710 5667b9da37f6d406b5d212c77444f2aa 485 SUPERFAMILY SSF47384 221 304 1.53E-16 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS09710 5667b9da37f6d406b5d212c77444f2aa 485 SUPERFAMILY SSF55874 293 449 4.85E-29 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS23900 5e2f92e9054b465dbb3bd02a0126e693 228 SUPERFAMILY SSF52540 2 174 1.73E-11 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS23900 5e2f92e9054b465dbb3bd02a0126e693 228 Gene3D G3DSA:3.40.50.300 1 185 1.3E-17 T 29-03-2018 AM354_RS18005 e8a39216e67d5577ff84da82e42812ca 387 Gene3D G3DSA:3.40.50.1970 9 183 4.9E-42 T 29-03-2018 AM354_RS18005 e8a39216e67d5577ff84da82e42812ca 387 Gene3D G3DSA:1.20.1090.10 184 387 4.9E-40 T 29-03-2018 AM354_RS18005 e8a39216e67d5577ff84da82e42812ca 387 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 173 201 - T 29-03-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AM354_RS18005 e8a39216e67d5577ff84da82e42812ca 387 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 264 284 - T 29-03-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AM354_RS18005 e8a39216e67d5577ff84da82e42812ca 387 Pfam PF00465 Iron-containing alcohol dehydrogenase 9 363 2.6E-88 T 29-03-2018 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 AM354_RS18005 e8a39216e67d5577ff84da82e42812ca 387 SUPERFAMILY SSF56796 1 385 2.22E-104 T 29-03-2018 AM354_RS25755 f64e42d733d6649efd383cab2f2a7bb3 205 SUPERFAMILY SSF48317 37 198 1.05E-8 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM354_RS25755 f64e42d733d6649efd383cab2f2a7bb3 205 Pfam PF14378 PAP2 superfamily 48 186 3.6E-10 T 29-03-2018 IPR026841 Inositolphosphotransferase Aur1/Ipt1 AM354_RS25755 f64e42d733d6649efd383cab2f2a7bb3 205 Gene3D G3DSA:1.20.144.10 4 203 1.0E-6 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM354_RS07255 3265b7d872d15f706d2977fcbce4a0a0 85 Pfam PF07338 Protein of unknown function (DUF1471) 33 85 1.3E-18 T 29-03-2018 IPR010854 Domain of unknown function DUF1471 AM354_RS07255 3265b7d872d15f706d2977fcbce4a0a0 85 SUPERFAMILY SSF159871 3 85 1.19E-24 T 29-03-2018 IPR010854 Domain of unknown function DUF1471 AM354_RS07255 3265b7d872d15f706d2977fcbce4a0a0 85 Gene3D G3DSA:3.30.1660.10 21 85 1.2E-22 T 29-03-2018 IPR025543 Dodecin-like AM354_RS00050 61ecc0773ff3241e9bd4d16ddf22a209 247 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 237 2.6E-106 T 29-03-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM354_RS00050 61ecc0773ff3241e9bd4d16ddf22a209 247 Gene3D G3DSA:3.30.70.980 83 174 9.1E-32 T 29-03-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM354_RS00050 61ecc0773ff3241e9bd4d16ddf22a209 247 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 239 36.294 T 29-03-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM354_RS00050 61ecc0773ff3241e9bd4d16ddf22a209 247 Gene3D G3DSA:3.30.70.980 175 247 3.0E-12 T 29-03-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM354_RS00050 61ecc0773ff3241e9bd4d16ddf22a209 247 SUPERFAMILY SSF75625 3 245 6.67E-97 T 29-03-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM354_RS00050 61ecc0773ff3241e9bd4d16ddf22a209 247 Pfam PF01709 Transcriptional regulator 5 236 9.7E-95 T 29-03-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM354_RS00050 61ecc0773ff3241e9bd4d16ddf22a209 247 Gene3D G3DSA:1.10.10.200 1 78 1.8E-30 T 29-03-2018 IPR017856 Integrase, N-terminal zinc-binding domain-like AM354_RS00560 48dbb30089e16e8e326ba44d302216e9 393 Gene3D G3DSA:1.10.150.130 93 206 3.0E-14 T 29-03-2018 IPR023109 Integrase/recombinase, N-terminal AM354_RS00560 48dbb30089e16e8e326ba44d302216e9 393 Pfam PF13356 Arm DNA-binding domain 2 85 1.3E-15 T 29-03-2018 IPR025166 Integrase, DNA-binding domain AM354_RS00560 48dbb30089e16e8e326ba44d302216e9 393 SUPERFAMILY SSF56349 97 379 3.53E-52 T 29-03-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AM354_RS00560 48dbb30089e16e8e326ba44d302216e9 393 Gene3D G3DSA:1.10.443.10 207 379 5.3E-30 T 29-03-2018 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM354_RS00560 48dbb30089e16e8e326ba44d302216e9 393 Pfam PF00589 Phage integrase family 203 369 1.3E-20 T 29-03-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM354_RS03865 26ca41ee5061cb8099e385ff6c45337d 75 Pfam PF06004 Bacterial protein of unknown function (DUF903) 26 72 9.4E-17 T 29-03-2018 IPR010305 Protein of unknown function DUF903 AM354_RS03865 26ca41ee5061cb8099e385ff6c45337d 75 Gene3D G3DSA:2.30.30.100 24 73 5.7E-20 T 29-03-2018 AM354_RS03865 26ca41ee5061cb8099e385ff6c45337d 75 SUPERFAMILY SSF50182 24 73 2.51E-11 T 29-03-2018 IPR010920 LSM domain AM354_RS10835 83bfb4b5b62d401e23d2a77d58d1098f 308 SUPERFAMILY SSF53850 90 296 2.17E-42 T 29-03-2018 AM354_RS10835 83bfb4b5b62d401e23d2a77d58d1098f 308 Gene3D G3DSA:1.10.10.10 4 85 1.2E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS10835 83bfb4b5b62d401e23d2a77d58d1098f 308 Gene3D G3DSA:3.40.190.10 177 264 1.8E-22 T 29-03-2018 AM354_RS10835 83bfb4b5b62d401e23d2a77d58d1098f 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 6.0E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS10835 83bfb4b5b62d401e23d2a77d58d1098f 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 6.0E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS10835 83bfb4b5b62d401e23d2a77d58d1098f 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 6.0E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS10835 83bfb4b5b62d401e23d2a77d58d1098f 308 Gene3D G3DSA:3.40.190.10 93 176 3.6E-11 T 29-03-2018 AM354_RS10835 83bfb4b5b62d401e23d2a77d58d1098f 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 2.9E-20 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS10835 83bfb4b5b62d401e23d2a77d58d1098f 308 SUPERFAMILY SSF46785 6 113 4.74E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS10835 83bfb4b5b62d401e23d2a77d58d1098f 308 Pfam PF03466 LysR substrate binding domain 89 291 1.2E-40 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS04405 b5fc57213b6f0299acd06611d6a64581 353 Gene3D G3DSA:3.30.360.10 132 344 5.2E-6 T 29-03-2018 AM354_RS04405 b5fc57213b6f0299acd06611d6a64581 353 Gene3D G3DSA:3.40.50.720 2 131 4.6E-14 T 29-03-2018 AM354_RS04405 b5fc57213b6f0299acd06611d6a64581 353 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 109 6.0E-14 T 29-03-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AM354_RS04405 b5fc57213b6f0299acd06611d6a64581 353 SUPERFAMILY SSF51735 4 134 9.26E-13 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS20580 fb4cd1623fd5da728eb1bea077f6d448 190 SUPERFAMILY SSF160443 89 172 1.01E-10 T 29-03-2018 IPR002625 Smr domain AM354_RS20580 fb4cd1623fd5da728eb1bea077f6d448 190 SMART SM00463 88 172 4.9E-13 T 29-03-2018 IPR002625 Smr domain AM354_RS20580 fb4cd1623fd5da728eb1bea077f6d448 190 Pfam PF01713 Smr domain 92 172 1.9E-18 T 29-03-2018 IPR002625 Smr domain AM354_RS15035 926c3f5b3fa25187cde087646bcce377 179 TIGRFAM TIGR01644 phage_P2_V: phage baseplate assembly protein V 17 171 2.8E-27 T 29-03-2018 IPR013046 Phage baseplate assembly protein V/Gp45 AM354_RS15035 926c3f5b3fa25187cde087646bcce377 179 PIRSF PIRSF012337 3 178 5.0E-53 T 29-03-2018 IPR014462 Phage-associated protein Gp45 AM354_RS15035 926c3f5b3fa25187cde087646bcce377 179 Pfam PF06890 Bacteriophage Mu Gp45 protein 24 154 6.8E-44 T 29-03-2018 IPR014462 Phage-associated protein Gp45 AM354_RS23805 309066155bb9415609817d2f4cb8a8ed 329 Gene3D G3DSA:1.10.3470.10 32 327 1.0E-37 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS23805 309066155bb9415609817d2f4cb8a8ed 329 Pfam PF02653 Branched-chain amino acid transport system / permease component 57 320 2.8E-52 T 29-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AM354_RS12495 3a1eec828597a2982e4ad7b21fd1406f 191 Gene3D G3DSA:1.10.357.10 55 180 5.2E-13 T 29-03-2018 AM354_RS12495 3a1eec828597a2982e4ad7b21fd1406f 191 Gene3D G3DSA:1.10.10.60 2 54 2.5E-9 T 29-03-2018 AM354_RS12495 3a1eec828597a2982e4ad7b21fd1406f 191 SUPERFAMILY SSF48498 74 158 4.64E-6 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AM354_RS12495 3a1eec828597a2982e4ad7b21fd1406f 191 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 49 1.9E-5 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS12495 3a1eec828597a2982e4ad7b21fd1406f 191 SUPERFAMILY SSF46689 3 67 7.7E-10 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS21795 16c699063f649dc2ed35234c0a612237 87 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 8 45 3.8E-6 T 29-03-2018 IPR007159 SpoVT-AbrB domain GO:0003677 AM354_RS21795 16c699063f649dc2ed35234c0a612237 87 SUPERFAMILY SSF89447 5 52 1.52E-7 T 29-03-2018 AM354_RS21795 16c699063f649dc2ed35234c0a612237 87 Gene3D G3DSA:2.10.260.10 5 42 1.4E-5 T 29-03-2018 AM354_RS02715 927caab6c1f572d9e036c9d22b781cce 238 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 62 235 6.6E-24 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS02715 927caab6c1f572d9e036c9d22b781cce 238 Gene3D G3DSA:1.10.3720.10 8 238 3.7E-28 T 29-03-2018 AM354_RS02715 927caab6c1f572d9e036c9d22b781cce 238 SUPERFAMILY SSF161098 40 223 1.27E-34 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS07620 df4a30e8474b4938ca54f3edc05e2488 343 SUPERFAMILY SSF53850 25 330 6.92E-73 T 29-03-2018 AM354_RS07620 df4a30e8474b4938ca54f3edc05e2488 343 Gene3D G3DSA:3.40.190.10 145 295 3.5E-36 T 29-03-2018 AM354_RS07620 df4a30e8474b4938ca54f3edc05e2488 343 PIRSF PIRSF002825 1 340 1.9E-73 T 29-03-2018 IPR026045 Ferric binding protein AM354_RS07620 df4a30e8474b4938ca54f3edc05e2488 343 Pfam PF13343 Bacterial extracellular solute-binding protein 75 284 7.0E-34 T 29-03-2018 AM354_RS07620 df4a30e8474b4938ca54f3edc05e2488 343 Gene3D G3DSA:3.40.190.10 25 144 1.1E-11 T 29-03-2018 AM354_RS08025 b4658e385a59cd12c2fe9f4a9c67c8ea 238 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 149 160 - T 29-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM354_RS08025 b4658e385a59cd12c2fe9f4a9c67c8ea 238 Gene3D G3DSA:1.10.1060.10 107 238 1.9E-30 T 29-03-2018 AM354_RS08025 b4658e385a59cd12c2fe9f4a9c67c8ea 238 Gene3D G3DSA:3.10.20.30 1 106 1.7E-32 T 29-03-2018 IPR012675 Beta-grasp domain AM354_RS08025 b4658e385a59cd12c2fe9f4a9c67c8ea 238 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 7 230 8.2E-91 T 29-03-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM354_RS08025 b4658e385a59cd12c2fe9f4a9c67c8ea 238 Pfam PF13534 4Fe-4S dicluster domain 148 221 4.4E-10 T 29-03-2018 AM354_RS08025 b4658e385a59cd12c2fe9f4a9c67c8ea 238 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 5 111 9.2E-32 T 29-03-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM354_RS08025 b4658e385a59cd12c2fe9f4a9c67c8ea 238 SUPERFAMILY SSF54292 1 106 1.67E-30 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM354_RS08025 b4658e385a59cd12c2fe9f4a9c67c8ea 238 SUPERFAMILY SSF46548 107 237 1.92E-40 T 29-03-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AM354_RS20980 3b815d6295d9ff9784f0a18e71e31e3f 251 Pfam PF00023 Ankyrin repeat 176 206 0.0014 T 29-03-2018 IPR002110 Ankyrin repeat GO:0005515 AM354_RS20980 3b815d6295d9ff9784f0a18e71e31e3f 251 SUPERFAMILY SSF48403 47 215 9.83E-35 T 29-03-2018 IPR020683 Ankyrin repeat-containing domain AM354_RS20980 3b815d6295d9ff9784f0a18e71e31e3f 251 SMART SM00248 75 104 12.0 T 29-03-2018 IPR002110 Ankyrin repeat GO:0005515 AM354_RS20980 3b815d6295d9ff9784f0a18e71e31e3f 251 SMART SM00248 142 171 1.1 T 29-03-2018 IPR002110 Ankyrin repeat GO:0005515 AM354_RS20980 3b815d6295d9ff9784f0a18e71e31e3f 251 SMART SM00248 108 137 0.078 T 29-03-2018 IPR002110 Ankyrin repeat GO:0005515 AM354_RS20980 3b815d6295d9ff9784f0a18e71e31e3f 251 SMART SM00248 175 204 0.015 T 29-03-2018 IPR002110 Ankyrin repeat GO:0005515 AM354_RS20980 3b815d6295d9ff9784f0a18e71e31e3f 251 Pfam PF12796 Ankyrin repeats (3 copies) 80 173 4.7E-11 T 29-03-2018 IPR020683 Ankyrin repeat-containing domain AM354_RS20980 3b815d6295d9ff9784f0a18e71e31e3f 251 Gene3D G3DSA:1.25.40.20 43 151 2.1E-20 T 29-03-2018 IPR020683 Ankyrin repeat-containing domain AM354_RS20980 3b815d6295d9ff9784f0a18e71e31e3f 251 Gene3D G3DSA:1.25.40.20 152 248 2.5E-18 T 29-03-2018 IPR020683 Ankyrin repeat-containing domain AM354_RS09850 d1e0a18431192c7835b02875dab34b3d 256 SUPERFAMILY SSF141523 39 156 2.22E-9 T 29-03-2018 AM354_RS09850 d1e0a18431192c7835b02875dab34b3d 256 Gene3D G3DSA:2.40.440.10 37 159 2.8E-9 T 29-03-2018 AM354_RS09850 d1e0a18431192c7835b02875dab34b3d 256 Pfam PF03734 L,D-transpeptidase catalytic domain 42 157 1.1E-7 T 29-03-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AM354_RS25440 82d8e0e1dd4a56c7e024209e014bf4f2 330 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 2 330 1.5E-142 T 29-03-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AM354_RS25440 82d8e0e1dd4a56c7e024209e014bf4f2 330 PIRSF PIRSF003161 1 330 1.2E-116 T 29-03-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AM354_RS25440 82d8e0e1dd4a56c7e024209e014bf4f2 330 Pfam PF14842 FliG N-terminal domain 3 102 3.8E-30 T 29-03-2018 IPR028263 Flagellar motor switch protein FliG, N-terminal domain AM354_RS25440 82d8e0e1dd4a56c7e024209e014bf4f2 330 Pfam PF14841 FliG middle domain 114 186 1.3E-24 T 29-03-2018 IPR032779 Flagellar motor switch protein FliG, middle domain AM354_RS25440 82d8e0e1dd4a56c7e024209e014bf4f2 330 SUPERFAMILY SSF48029 4 103 2.88E-20 T 29-03-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical AM354_RS25440 82d8e0e1dd4a56c7e024209e014bf4f2 330 SUPERFAMILY SSF48029 114 323 2.22E-62 T 29-03-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical AM354_RS25440 82d8e0e1dd4a56c7e024209e014bf4f2 330 Gene3D G3DSA:1.10.220.30 2 66 6.7E-11 T 29-03-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical AM354_RS25440 82d8e0e1dd4a56c7e024209e014bf4f2 330 Gene3D G3DSA:1.10.220.30 67 189 1.5E-21 T 29-03-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical AM354_RS25440 82d8e0e1dd4a56c7e024209e014bf4f2 330 Gene3D G3DSA:1.10.220.30 193 330 4.4E-29 T 29-03-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical AM354_RS25440 82d8e0e1dd4a56c7e024209e014bf4f2 330 Pfam PF01706 FliG C-terminal domain 216 322 2.7E-37 T 29-03-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal AM354_RS25440 82d8e0e1dd4a56c7e024209e014bf4f2 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 224 244 1.7E-72 T 29-03-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AM354_RS25440 82d8e0e1dd4a56c7e024209e014bf4f2 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 32 58 1.7E-72 T 29-03-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AM354_RS25440 82d8e0e1dd4a56c7e024209e014bf4f2 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 246 266 1.7E-72 T 29-03-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AM354_RS25440 82d8e0e1dd4a56c7e024209e014bf4f2 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 270 296 1.7E-72 T 29-03-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AM354_RS25440 82d8e0e1dd4a56c7e024209e014bf4f2 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 3 19 1.7E-72 T 29-03-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AM354_RS25440 82d8e0e1dd4a56c7e024209e014bf4f2 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 193 218 1.7E-72 T 29-03-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AM354_RS25440 82d8e0e1dd4a56c7e024209e014bf4f2 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 113 136 1.7E-72 T 29-03-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AM354_RS21410 dddbab9a14de6158b4f12cadcaaa02c4 270 Gene3D G3DSA:1.10.10.730 122 164 0.0012 T 29-03-2018 AM354_RS21410 dddbab9a14de6158b4f12cadcaaa02c4 270 SUPERFAMILY SSF110849 23 95 3.66E-5 T 29-03-2018 IPR003115 ParB/Sulfiredoxin AM354_RS21410 dddbab9a14de6158b4f12cadcaaa02c4 270 Gene3D G3DSA:3.90.1530.10 8 121 1.6E-7 T 29-03-2018 AM354_RS21410 dddbab9a14de6158b4f12cadcaaa02c4 270 SUPERFAMILY SSF109709 123 198 2.88E-12 T 29-03-2018 AM354_RS09430 ecebfbe687aec5c0155d733a541e81c0 172 Pfam PF13673 Acetyltransferase (GNAT) domain 41 141 3.1E-13 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS09430 ecebfbe687aec5c0155d733a541e81c0 172 Gene3D G3DSA:3.40.630.30 1 167 1.7E-22 T 29-03-2018 AM354_RS09430 ecebfbe687aec5c0155d733a541e81c0 172 SUPERFAMILY SSF55729 1 140 7.38E-23 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS21745 56363d182491074a2442036268d9e15b 118 PIRSF PIRSF011474 1 118 2.7E-37 T 29-03-2018 IPR009693 Glucitol operon activator AM354_RS21745 56363d182491074a2442036268d9e15b 118 Pfam PF06923 Glucitol operon activator protein (GutM) 5 110 2.7E-33 T 29-03-2018 IPR009693 Glucitol operon activator AM354_RS25765 e32017acb038d2add8387a18bccf82a3 360 Pfam PF00487 Fatty acid desaturase 66 340 1.4E-33 T 29-03-2018 IPR005804 Fatty acid desaturase domain GO:0006629 AM354_RS25765 e32017acb038d2add8387a18bccf82a3 360 Gene3D G3DSA:1.20.1250.20 40 265 6.5E-4 T 29-03-2018 AM354_RS06580 9bc52f00c9fcf4bf8287969f608d6c28 235 Pfam PF02798 Glutathione S-transferase, N-terminal domain 21 99 4.2E-14 T 29-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AM354_RS06580 9bc52f00c9fcf4bf8287969f608d6c28 235 SUPERFAMILY SSF47616 103 230 2.78E-33 T 29-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like AM354_RS06580 9bc52f00c9fcf4bf8287969f608d6c28 235 Gene3D G3DSA:1.20.1050.10 121 233 5.8E-28 T 29-03-2018 AM354_RS06580 9bc52f00c9fcf4bf8287969f608d6c28 235 Gene3D G3DSA:3.40.30.10 10 120 1.3E-29 T 29-03-2018 AM354_RS06580 9bc52f00c9fcf4bf8287969f608d6c28 235 SUPERFAMILY SSF52833 12 102 1.3E-24 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS06580 9bc52f00c9fcf4bf8287969f608d6c28 235 Pfam PF00043 Glutathione S-transferase, C-terminal domain 136 222 5.2E-9 T 29-03-2018 IPR004046 Glutathione S-transferase, C-terminal AM354_RS15585 01da81c2587affd94543f56d40da0003 94 SUPERFAMILY SSF159871 4 91 3.14E-23 T 29-03-2018 IPR010854 Domain of unknown function DUF1471 AM354_RS15585 01da81c2587affd94543f56d40da0003 94 Pfam PF07338 Protein of unknown function (DUF1471) 38 91 7.3E-19 T 29-03-2018 IPR010854 Domain of unknown function DUF1471 AM354_RS15585 01da81c2587affd94543f56d40da0003 94 Gene3D G3DSA:3.30.1660.10 22 91 2.8E-19 T 29-03-2018 IPR025543 Dodecin-like AM354_RS23355 e5b25b876d0b146cd40c52c6e266ff82 155 Pfam PF07080 Protein of unknown function (DUF1348) 8 137 2.8E-64 T 29-03-2018 IPR009783 Protein of unknown function DUF1348 AM354_RS23355 e5b25b876d0b146cd40c52c6e266ff82 155 SUPERFAMILY SSF54427 2 155 1.9E-77 T 29-03-2018 IPR032710 NTF2-like domain AM354_RS23355 e5b25b876d0b146cd40c52c6e266ff82 155 Gene3D G3DSA:3.10.450.50 11 155 3.6E-67 T 29-03-2018 AM354_RS15835 e330b20c9f07ba52a2c57c839d0f7552 405 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 13 400 45.946 T 29-03-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 AM354_RS15835 e330b20c9f07ba52a2c57c839d0f7552 405 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 222 259 - T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM354_RS15835 e330b20c9f07ba52a2c57c839d0f7552 405 TIGRFAM TIGR03246 arg_catab_astC: succinylornithine transaminase family 7 402 1.6E-206 T 29-03-2018 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria GO:0006520|GO:0008483|GO:0030170 AM354_RS15835 e330b20c9f07ba52a2c57c839d0f7552 405 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 16 398 1.8E-154 T 29-03-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 AM354_RS15835 e330b20c9f07ba52a2c57c839d0f7552 405 Gene3D G3DSA:3.90.1150.10 293 405 6.1E-14 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS15835 e330b20c9f07ba52a2c57c839d0f7552 405 Pfam PF00202 Aminotransferase class-III 24 398 1.4E-132 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM354_RS15835 e330b20c9f07ba52a2c57c839d0f7552 405 SUPERFAMILY SSF53383 17 399 3.06E-126 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS15835 e330b20c9f07ba52a2c57c839d0f7552 405 Gene3D G3DSA:3.90.1150.10 1 177 5.2E-50 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS15835 e330b20c9f07ba52a2c57c839d0f7552 405 Gene3D G3DSA:3.40.640.10 178 292 2.4E-44 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS15835 e330b20c9f07ba52a2c57c839d0f7552 405 PIRSF PIRSF000521 173 402 4.7E-31 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM354_RS15835 e330b20c9f07ba52a2c57c839d0f7552 405 PIRSF PIRSF000521 23 157 1.3E-7 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM354_RS13420 c9d7431897ec82ae01027b38597e67c0 370 Pfam PF01270 Glycosyl hydrolases family 8 11 347 3.4E-95 T 29-03-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 AM354_RS13420 c9d7431897ec82ae01027b38597e67c0 370 PRINTS PR00735 Glycosyl hydrolase family 8 signature 216 227 1.9E-20 T 29-03-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 AM354_RS13420 c9d7431897ec82ae01027b38597e67c0 370 PRINTS PR00735 Glycosyl hydrolase family 8 signature 115 133 1.9E-20 T 29-03-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 AM354_RS13420 c9d7431897ec82ae01027b38597e67c0 370 PRINTS PR00735 Glycosyl hydrolase family 8 signature 53 66 1.9E-20 T 29-03-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 AM354_RS13420 c9d7431897ec82ae01027b38597e67c0 370 PRINTS PR00735 Glycosyl hydrolase family 8 signature 180 197 1.9E-20 T 29-03-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 AM354_RS13420 c9d7431897ec82ae01027b38597e67c0 370 PRINTS PR00735 Glycosyl hydrolase family 8 signature 241 250 1.9E-20 T 29-03-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 AM354_RS13420 c9d7431897ec82ae01027b38597e67c0 370 PRINTS PR00735 Glycosyl hydrolase family 8 signature 333 347 1.9E-20 T 29-03-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 AM354_RS13420 c9d7431897ec82ae01027b38597e67c0 370 Gene3D G3DSA:1.50.10.10 23 362 6.8E-96 T 29-03-2018 AM354_RS13420 c9d7431897ec82ae01027b38597e67c0 370 SUPERFAMILY SSF48208 8 352 1.29E-101 T 29-03-2018 IPR008928 Six-hairpin glycosidase-like GO:0003824 AM354_RS13645 1aea6e11c5fbe1d37f654753d08bb788 201 SUPERFAMILY SSF47616 77 200 7.8E-19 T 29-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like AM354_RS13645 1aea6e11c5fbe1d37f654753d08bb788 201 Gene3D G3DSA:1.20.1050.10 89 201 8.5E-18 T 29-03-2018 AM354_RS13645 1aea6e11c5fbe1d37f654753d08bb788 201 Gene3D G3DSA:3.40.30.10 1 88 7.1E-18 T 29-03-2018 AM354_RS13645 1aea6e11c5fbe1d37f654753d08bb788 201 SUPERFAMILY SSF52833 1 100 1.74E-18 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS13645 1aea6e11c5fbe1d37f654753d08bb788 201 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 73 2.4E-17 T 29-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AM354_RS13645 1aea6e11c5fbe1d37f654753d08bb788 201 Pfam PF00043 Glutathione S-transferase, C-terminal domain 112 193 8.9E-8 T 29-03-2018 IPR004046 Glutathione S-transferase, C-terminal AM354_RS04310 04a15151371c40c78b7e1c27e8807967 161 SUPERFAMILY SSF143744 13 152 2.48E-25 T 29-03-2018 AM354_RS04310 04a15151371c40c78b7e1c27e8807967 161 Hamap MF_00761 UPF0303 protein . 4 155 32.602 T 29-03-2018 IPR010371 Uncharacterised protein family UPF0303 AM354_RS04310 04a15151371c40c78b7e1c27e8807967 161 PIRSF PIRSF008757 1 160 3.4E-56 T 29-03-2018 IPR010371 Uncharacterised protein family UPF0303 AM354_RS04310 04a15151371c40c78b7e1c27e8807967 161 Pfam PF03928 Haem-degrading 23 148 6.8E-31 T 29-03-2018 IPR005624 Haem-degrading AM354_RS19390 e10a2bcb9ac61f0b3499143c3f07e225 517 Pfam PF00005 ABC transporter 277 431 4.3E-14 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS19390 e10a2bcb9ac61f0b3499143c3f07e225 517 Pfam PF00005 ABC transporter 27 177 3.5E-30 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS19390 e10a2bcb9ac61f0b3499143c3f07e225 517 Gene3D G3DSA:3.40.50.300 7 260 6.3E-56 T 29-03-2018 AM354_RS19390 e10a2bcb9ac61f0b3499143c3f07e225 517 Gene3D G3DSA:3.40.50.300 263 510 5.4E-31 T 29-03-2018 AM354_RS19390 e10a2bcb9ac61f0b3499143c3f07e225 517 SMART SM00382 284 479 1.2 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS19390 e10a2bcb9ac61f0b3499143c3f07e225 517 SMART SM00382 35 225 5.0E-10 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS19390 e10a2bcb9ac61f0b3499143c3f07e225 517 ProSitePatterns PS00211 ABC transporters family signature. 403 417 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS19390 e10a2bcb9ac61f0b3499143c3f07e225 517 SUPERFAMILY SSF52540 9 234 6.63E-57 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS19390 e10a2bcb9ac61f0b3499143c3f07e225 517 SUPERFAMILY SSF52540 276 488 1.88E-37 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS18695 1411290efee48e726cab7e044cfe9359 91 Pfam PF00403 Heavy-metal-associated domain 25 85 2.0E-15 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AM354_RS18695 1411290efee48e726cab7e044cfe9359 91 Gene3D G3DSA:3.30.70.100 20 91 6.3E-23 T 29-03-2018 AM354_RS18695 1411290efee48e726cab7e044cfe9359 91 PRINTS PR00946 Mercury scavenger protein signature 2 20 5.3E-52 T 29-03-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 AM354_RS18695 1411290efee48e726cab7e044cfe9359 91 PRINTS PR00946 Mercury scavenger protein signature 20 31 5.3E-52 T 29-03-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 AM354_RS18695 1411290efee48e726cab7e044cfe9359 91 PRINTS PR00946 Mercury scavenger protein signature 31 47 5.3E-52 T 29-03-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 AM354_RS18695 1411290efee48e726cab7e044cfe9359 91 PRINTS PR00946 Mercury scavenger protein signature 47 62 5.3E-52 T 29-03-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 AM354_RS18695 1411290efee48e726cab7e044cfe9359 91 PRINTS PR00946 Mercury scavenger protein signature 76 90 5.3E-52 T 29-03-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 AM354_RS18695 1411290efee48e726cab7e044cfe9359 91 PRINTS PR00946 Mercury scavenger protein signature 62 76 5.3E-52 T 29-03-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 AM354_RS18695 1411290efee48e726cab7e044cfe9359 91 TIGRFAM TIGR02052 MerP: mercuric transport protein periplasmic component 1 91 4.5E-44 T 29-03-2018 IPR011795 Mercuric transport protein periplasmic component GO:0015097|GO:0015694|GO:0042597|GO:0045340|GO:0046689 AM354_RS18695 1411290efee48e726cab7e044cfe9359 91 ProSitePatterns PS01047 Heavy-metal-associated domain. 28 57 - T 29-03-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 AM354_RS18695 1411290efee48e726cab7e044cfe9359 91 SUPERFAMILY SSF55008 17 89 8.9E-22 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AM354_RS07170 658a2817dd0a3d5e0f92998253ac184c 855 SMART SM01276 30 332 1.1E-36 T 29-03-2018 IPR031161 Peptidase family M60 domain AM354_RS07170 658a2817dd0a3d5e0f92998253ac184c 855 Pfam PF03272 Putative mucin or carbohydrate-binding module 538 650 2.2E-29 T 29-03-2018 IPR004954 Putative mucin or carbohydrate-binding domain GO:0016032 AM354_RS07170 658a2817dd0a3d5e0f92998253ac184c 855 Pfam PF03272 Putative mucin or carbohydrate-binding module 735 850 4.3E-27 T 29-03-2018 IPR004954 Putative mucin or carbohydrate-binding domain GO:0016032 AM354_RS07170 658a2817dd0a3d5e0f92998253ac184c 855 Pfam PF13402 Peptidase M60, enhancin and enhancin-like 113 345 4.1E-12 T 29-03-2018 IPR031161 Peptidase family M60 domain AM354_RS13830 a7647a9d1dd0aaa29697fcb6a8e1920f 426 SUPERFAMILY SSF82171 294 422 5.49E-20 T 29-03-2018 AM354_RS13830 a7647a9d1dd0aaa29697fcb6a8e1920f 426 SUPERFAMILY SSF82171 22 167 5.49E-20 T 29-03-2018 AM354_RS13830 a7647a9d1dd0aaa29697fcb6a8e1920f 426 SUPERFAMILY SSF82171 243 258 5.49E-20 T 29-03-2018 AM354_RS13830 a7647a9d1dd0aaa29697fcb6a8e1920f 426 Gene3D G3DSA:2.120.10.30 3 147 0.049 T 29-03-2018 IPR011042 Six-bladed beta-propeller, TolB-like AM354_RS13830 a7647a9d1dd0aaa29697fcb6a8e1920f 426 Pfam PF12566 Protein of unknown function (DUF3748) 67 187 4.8E-57 T 29-03-2018 IPR022223 Protein of unknown function DUF3748 AM354_RS13830 a7647a9d1dd0aaa29697fcb6a8e1920f 426 Gene3D G3DSA:2.140.10.30 148 424 8.8E-25 T 29-03-2018 AM354_RS13830 a7647a9d1dd0aaa29697fcb6a8e1920f 426 Pfam PF07676 WD40-like Beta Propeller Repeat 401 423 0.0054 T 29-03-2018 IPR011659 WD40-like Beta Propeller AM354_RS03540 f5878ba07500978a07d0e34e9817fa97 287 SUPERFAMILY SSF161098 13 280 2.9E-52 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS03540 f5878ba07500978a07d0e34e9817fa97 287 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 282 4.9E-16 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS03540 f5878ba07500978a07d0e34e9817fa97 287 Gene3D G3DSA:1.10.3720.10 18 287 3.8E-46 T 29-03-2018 AM354_RS03540 f5878ba07500978a07d0e34e9817fa97 287 TIGRFAM TIGR03226 PhnU: 2-aminoethylphosphonate ABC transporter, permease protein 12 286 3.0E-126 T 29-03-2018 IPR017636 2-aminoethylphosphonate ABC transporter system, permease protein phnU GO:0016020|GO:0033223 AM354_RS25720 2f6c4d8ef1fd0fedeb7cc1f859008080 514 Gene3D G3DSA:3.30.70.20 198 236 4.1E-19 T 29-03-2018 AM354_RS25720 2f6c4d8ef1fd0fedeb7cc1f859008080 514 Pfam PF13247 4Fe-4S dicluster domain 175 271 1.0E-36 T 29-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM354_RS25720 2f6c4d8ef1fd0fedeb7cc1f859008080 514 TIGRFAM TIGR01660 narH: nitrate reductase, beta subunit 1 491 4.4E-303 T 29-03-2018 IPR006547 Nitrate reductase, beta subunit GO:0008940|GO:0009325|GO:0042126|GO:0055114 KEGG: 00910+1.7.99.4 AM354_RS25720 2f6c4d8ef1fd0fedeb7cc1f859008080 514 SUPERFAMILY SSF54862 1 502 4.19E-181 T 29-03-2018 AM354_RS25720 2f6c4d8ef1fd0fedeb7cc1f859008080 514 Gene3D G3DSA:1.10.3650.10 363 434 1.1E-30 T 29-03-2018 AM354_RS25720 2f6c4d8ef1fd0fedeb7cc1f859008080 514 Gene3D G3DSA:3.30.70.20 5 197 4.8E-28 T 29-03-2018 AM354_RS25720 2f6c4d8ef1fd0fedeb7cc1f859008080 514 Pfam PF14711 Respiratory nitrate reductase beta C-terminal 358 436 2.5E-30 T 29-03-2018 IPR029263 Respiratory nitrate reductase beta, C-terminal KEGG: 00910+1.7.99.4 AM354_RS25720 2f6c4d8ef1fd0fedeb7cc1f859008080 514 Gene3D G3DSA:3.30.70.20 237 362 2.4E-30 T 29-03-2018 AM354_RS13465 6300705d6003292b58dcd5bfe4a8e79e 326 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS13465 6300705d6003292b58dcd5bfe4a8e79e 326 Pfam PF00005 ABC transporter 24 181 1.2E-27 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS13465 6300705d6003292b58dcd5bfe4a8e79e 326 SUPERFAMILY SSF52540 3 253 6.95E-65 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS13465 6300705d6003292b58dcd5bfe4a8e79e 326 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 233 297 2.4E-18 T 29-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AM354_RS13465 6300705d6003292b58dcd5bfe4a8e79e 326 SMART SM00382 32 231 4.0E-13 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS13465 6300705d6003292b58dcd5bfe4a8e79e 326 Gene3D G3DSA:3.40.50.300 1 323 7.9E-76 T 29-03-2018 AM354_RS13465 6300705d6003292b58dcd5bfe4a8e79e 326 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 231 315 1.2E-25 T 29-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AM354_RS25985 7eba1b51fca055278ccfdaa0969dfde2 454 Gene3D G3DSA:3.30.1330.90 10 158 1.6E-51 T 29-03-2018 IPR029009 Allosteric substrate binding domain Reactome: R-HSA-977347 AM354_RS25985 7eba1b51fca055278ccfdaa0969dfde2 454 SUPERFAMILY SSF143548 16 157 3.66E-46 T 29-03-2018 IPR029009 Allosteric substrate binding domain Reactome: R-HSA-977347 AM354_RS25985 7eba1b51fca055278ccfdaa0969dfde2 454 Gene3D G3DSA:1.10.4100.10 263 444 2.5E-34 T 29-03-2018 AM354_RS25985 7eba1b51fca055278ccfdaa0969dfde2 454 Pfam PF03315 Serine dehydratase beta chain 3 155 1.5E-56 T 29-03-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 AM354_RS25985 7eba1b51fca055278ccfdaa0969dfde2 454 Pfam PF03313 Serine dehydratase alpha chain 184 448 1.3E-95 T 29-03-2018 IPR005130 Serine dehydratase-like, alpha subunit AM354_RS25985 7eba1b51fca055278ccfdaa0969dfde2 454 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 2 451 4.5E-228 T 29-03-2018 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 AM354_RS01420 a739db3f20330b38e37f02dceb6c826c 240 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM354_RS01420 a739db3f20330b38e37f02dceb6c826c 240 Gene3D G3DSA:3.40.50.720 8 240 4.3E-44 T 29-03-2018 AM354_RS01420 a739db3f20330b38e37f02dceb6c826c 240 SUPERFAMILY SSF51735 9 237 2.29E-42 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS01420 a739db3f20330b38e37f02dceb6c826c 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 3.0E-14 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS01420 a739db3f20330b38e37f02dceb6c826c 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 3.0E-14 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS01420 a739db3f20330b38e37f02dceb6c826c 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.0E-14 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS01420 a739db3f20330b38e37f02dceb6c826c 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 3.0E-14 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS01420 a739db3f20330b38e37f02dceb6c826c 240 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 236 1.5E-28 T 29-03-2018 AM354_RS12995 6284eb60fe6ab2b6de479b728af3a641 281 Gene3D G3DSA:1.10.3720.10 3 270 2.3E-33 T 29-03-2018 AM354_RS12995 6284eb60fe6ab2b6de479b728af3a641 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 276 1.2E-20 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS12995 6284eb60fe6ab2b6de479b728af3a641 281 SUPERFAMILY SSF161098 4 277 3.74E-60 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS14490 7ba0d54220e62e8af50977a8221212ab 159 Pfam PF07813 LTXXQ motif family protein 43 138 1.4E-20 T 29-03-2018 IPR012899 LTXXQ motif family protein GO:0042597 AM354_RS14490 7ba0d54220e62e8af50977a8221212ab 159 PIRSF PIRSF034445 1 148 4.1E-29 T 29-03-2018 IPR012899 LTXXQ motif family protein GO:0042597 AM354_RS10270 e8e429738fd80eb12221c74bedcd5198 157 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 35 50 - T 29-03-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AM354_RS10270 e8e429738fd80eb12221c74bedcd5198 157 SUPERFAMILY SSF69765 1 156 6.67E-66 T 29-03-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AM354_RS10270 e8e429738fd80eb12221c74bedcd5198 157 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2 156 1.3E-70 T 29-03-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AM354_RS10270 e8e429738fd80eb12221c74bedcd5198 157 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 1 156 36.7 T 29-03-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AM354_RS10270 e8e429738fd80eb12221c74bedcd5198 157 Gene3D G3DSA:3.30.1330.50 1 157 7.8E-73 T 29-03-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AM354_RS10270 e8e429738fd80eb12221c74bedcd5198 157 Pfam PF02542 YgbB family 1 154 3.0E-66 T 29-03-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AM354_RS25310 b1732fb39a670cb0f311004d06495eb1 216 SUPERFAMILY SSF51269 88 153 6.62E-5 T 29-03-2018 IPR006190 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal Reactome: R-HSA-4085001 AM354_RS25310 b1732fb39a670cb0f311004d06495eb1 216 Gene3D G3DSA:3.90.1210.10 92 155 1.5E-13 T 29-03-2018 AM354_RS25310 b1732fb39a670cb0f311004d06495eb1 216 Pfam PF13144 Chaperone for flagella basal body P-ring formation 22 214 1.0E-43 T 29-03-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal AM354_RS25310 b1732fb39a670cb0f311004d06495eb1 216 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 81 214 1.2E-39 T 29-03-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal AM354_RS25310 b1732fb39a670cb0f311004d06495eb1 216 SMART SM00858 92 154 7.2E-13 T 29-03-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 AM354_RS07860 b26c04fb3bd2c02d319d317b0f4d098e 250 TIGRFAM TIGR01258 pgm_1: phosphoglycerate mutase 1 family 5 248 6.1E-128 T 29-03-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 AM354_RS07860 b26c04fb3bd2c02d319d317b0f4d098e 250 Hamap MF_01039 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 3 230 46.814 T 29-03-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 AM354_RS07860 b26c04fb3bd2c02d319d317b0f4d098e 250 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 8 17 - T 29-03-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 AM354_RS07860 b26c04fb3bd2c02d319d317b0f4d098e 250 SUPERFAMILY SSF53254 4 247 4.71E-78 T 29-03-2018 IPR029033 Histidine phosphatase superfamily AM354_RS07860 b26c04fb3bd2c02d319d317b0f4d098e 250 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 6 125 1.4E-30 T 29-03-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AM354_RS07860 b26c04fb3bd2c02d319d317b0f4d098e 250 SMART SM00855 5 191 1.9E-28 T 29-03-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AM354_RS07860 b26c04fb3bd2c02d319d317b0f4d098e 250 PIRSF PIRSF000709 3 116 2.1E-9 T 29-03-2018 AM354_RS07860 b26c04fb3bd2c02d319d317b0f4d098e 250 PIRSF PIRSF000709 172 240 0.023 T 29-03-2018 AM354_RS07860 b26c04fb3bd2c02d319d317b0f4d098e 250 Gene3D G3DSA:3.40.50.1240 2 250 3.7E-67 T 29-03-2018 IPR029033 Histidine phosphatase superfamily AM354_RS02425 c52fa5f0bdc194c5ded3a495d610f85d 641 SUPERFAMILY SSF56601 255 619 6.73E-86 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM354_RS02425 c52fa5f0bdc194c5ded3a495d610f85d 641 SUPERFAMILY SSF56519 58 254 3.4E-51 T 29-03-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AM354_RS02425 c52fa5f0bdc194c5ded3a495d610f85d 641 Gene3D G3DSA:3.90.1310.10 34 250 6.8E-54 T 29-03-2018 AM354_RS02425 c52fa5f0bdc194c5ded3a495d610f85d 641 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 20 616 6.2E-222 T 29-03-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0016020 AM354_RS02425 c52fa5f0bdc194c5ded3a495d610f85d 641 Gene3D G3DSA:3.40.710.10 251 620 1.0E-81 T 29-03-2018 AM354_RS02425 c52fa5f0bdc194c5ded3a495d610f85d 641 Pfam PF03717 Penicillin-binding Protein dimerisation domain 65 238 2.1E-48 T 29-03-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AM354_RS02425 c52fa5f0bdc194c5ded3a495d610f85d 641 Pfam PF00905 Penicillin binding protein transpeptidase domain 273 612 3.5E-73 T 29-03-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AM354_RS24965 8942175a6dd8049e0920a59aaa293a62 435 Gene3D G3DSA:1.20.1250.20 235 431 3.5E-18 T 29-03-2018 AM354_RS24965 8942175a6dd8049e0920a59aaa293a62 435 Pfam PF07690 Major Facilitator Superfamily 26 390 2.5E-33 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS24965 8942175a6dd8049e0920a59aaa293a62 435 Gene3D G3DSA:1.20.1250.20 9 219 5.9E-30 T 29-03-2018 AM354_RS24965 8942175a6dd8049e0920a59aaa293a62 435 SUPERFAMILY SSF103473 7 428 1.57E-69 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS03400 4289fd65086ba69d31f440f4b31d6262 65 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 64 1.0E-26 T 29-03-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AM354_RS03400 4289fd65086ba69d31f440f4b31d6262 65 Pfam PF01632 Ribosomal protein L35 2 61 4.8E-23 T 29-03-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS03400 4289fd65086ba69d31f440f4b31d6262 65 PRINTS PR00064 Ribosomal protein L35 signature 21 35 1.6E-22 T 29-03-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AM354_RS03400 4289fd65086ba69d31f440f4b31d6262 65 PRINTS PR00064 Ribosomal protein L35 signature 36 54 1.6E-22 T 29-03-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AM354_RS03400 4289fd65086ba69d31f440f4b31d6262 65 PRINTS PR00064 Ribosomal protein L35 signature 3 20 1.6E-22 T 29-03-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AM354_RS03400 4289fd65086ba69d31f440f4b31d6262 65 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 29-03-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS03400 4289fd65086ba69d31f440f4b31d6262 65 SUPERFAMILY SSF143034 2 64 9.94E-23 T 29-03-2018 AM354_RS03400 4289fd65086ba69d31f440f4b31d6262 65 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 18.116 T 29-03-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AM354_RS10110 24b9ce0e3f73cfdd3fafe215a48e6f71 414 Pfam PF00571 CBS domain 263 311 3.2E-4 T 29-03-2018 IPR000644 CBS domain AM354_RS10110 24b9ce0e3f73cfdd3fafe215a48e6f71 414 Pfam PF01595 Domain of unknown function DUF21 2 169 1.4E-48 T 29-03-2018 IPR002550 Domain of unknown function DUF21 AM354_RS10110 24b9ce0e3f73cfdd3fafe215a48e6f71 414 Gene3D G3DSA:3.30.465.10 323 405 3.8E-19 T 29-03-2018 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AM354_RS10110 24b9ce0e3f73cfdd3fafe215a48e6f71 414 Gene3D G3DSA:3.10.580.10 170 322 4.5E-20 T 29-03-2018 AM354_RS10110 24b9ce0e3f73cfdd3fafe215a48e6f71 414 SUPERFAMILY SSF54631 177 314 2.07E-23 T 29-03-2018 AM354_RS10110 24b9ce0e3f73cfdd3fafe215a48e6f71 414 SUPERFAMILY SSF56176 325 407 7.63E-22 T 29-03-2018 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AM354_RS10110 24b9ce0e3f73cfdd3fafe215a48e6f71 414 SMART SM01091 327 405 9.1E-26 T 29-03-2018 IPR005170 Transporter-associated domain AM354_RS10110 24b9ce0e3f73cfdd3fafe215a48e6f71 414 Pfam PF03471 Transporter associated domain 329 403 2.2E-19 T 29-03-2018 IPR005170 Transporter-associated domain AM354_RS17360 c6ccbc080c1653940e7839848cdcf3c4 210 TIGRFAM TIGR02365 dha_L_ycgS: dihydroxyacetone kinase, L subunit 9 205 5.9E-81 T 29-03-2018 IPR012737 Dihydroxyacetone kinase, subunit L GO:0016772 AM354_RS17360 c6ccbc080c1653940e7839848cdcf3c4 210 Pfam PF02734 DAK2 domain 32 205 7.5E-58 T 29-03-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AM354_RS17360 c6ccbc080c1653940e7839848cdcf3c4 210 SUPERFAMILY SSF101473 3 207 7.46E-60 T 29-03-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AM354_RS17360 c6ccbc080c1653940e7839848cdcf3c4 210 SMART SM01120 32 206 6.5E-86 T 29-03-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AM354_RS00140 87b9ae7885a8c0490b07fe152de29d46 233 Pfam PF00814 Glycoprotease family 30 153 2.0E-29 T 29-03-2018 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AM354_RS00140 87b9ae7885a8c0490b07fe152de29d46 233 Gene3D G3DSA:3.30.420.40 3 233 1.5E-39 T 29-03-2018 AM354_RS00140 87b9ae7885a8c0490b07fe152de29d46 233 SUPERFAMILY SSF53067 110 219 4.4E-29 T 29-03-2018 AM354_RS00140 87b9ae7885a8c0490b07fe152de29d46 233 SUPERFAMILY SSF53067 5 105 3.84E-30 T 29-03-2018 AM354_RS00140 87b9ae7885a8c0490b07fe152de29d46 233 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 5 221 4.3E-70 T 29-03-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 AM354_RS09690 5260abb8b032d12f7180bb854e7a3861 354 SUPERFAMILY SSF53474 183 350 1.24E-30 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS09690 5260abb8b032d12f7180bb854e7a3861 354 SUPERFAMILY SSF53474 59 150 1.24E-30 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS09690 5260abb8b032d12f7180bb854e7a3861 354 Gene3D G3DSA:3.40.50.1820 16 354 4.9E-53 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS09690 5260abb8b032d12f7180bb854e7a3861 354 Pfam PF12697 Alpha/beta hydrolase family 81 298 6.7E-8 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS10740 bf9de333e47db2d4d1a5e87012a8d6b6 786 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 8 765 21.443 T 29-03-2018 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 AM354_RS10740 bf9de333e47db2d4d1a5e87012a8d6b6 786 Gene3D G3DSA:2.60.450.10 43 207 1.1E-17 T 29-03-2018 AM354_RS10740 bf9de333e47db2d4d1a5e87012a8d6b6 786 Pfam PF04453 Organic solvent tolerance protein 304 699 2.7E-107 T 29-03-2018 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 AM354_RS10740 bf9de333e47db2d4d1a5e87012a8d6b6 786 Gene3D G3DSA:2.40.160.20 583 769 2.1E-4 T 29-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AM354_RS10740 bf9de333e47db2d4d1a5e87012a8d6b6 786 Pfam PF03968 OstA-like protein 52 193 2.4E-27 T 29-03-2018 IPR005653 Organic solvent tolerance-like, N-terminal AM354_RS13060 e75a85b9659f3d20cf93fe533788dd4b 317 TIGRFAM TIGR00439 ftsX: putative protein insertion permease FtsX 19 316 1.8E-128 T 29-03-2018 IPR004513 Cell division protein FtsX GO:0007049|GO:0016021 AM354_RS13060 e75a85b9659f3d20cf93fe533788dd4b 317 PIRSF PIRSF003097 16 313 4.4E-93 T 29-03-2018 IPR004513 Cell division protein FtsX GO:0007049|GO:0016021 AM354_RS06335 fcb1b1eeb7c27cb4460a9cb1173015df 724 Gene3D G3DSA:3.40.50.300 523 719 9.4E-30 T 29-03-2018 AM354_RS06335 fcb1b1eeb7c27cb4460a9cb1173015df 724 Pfam PF13614 AAA domain 540 654 7.1E-15 T 29-03-2018 IPR025669 AAA domain AM354_RS06335 fcb1b1eeb7c27cb4460a9cb1173015df 724 Pfam PF02706 Chain length determinant protein 16 107 1.8E-23 T 29-03-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 AM354_RS06335 fcb1b1eeb7c27cb4460a9cb1173015df 724 Gene3D G3DSA:3.30.1890.10 46 423 1.7E-74 T 29-03-2018 AM354_RS06335 fcb1b1eeb7c27cb4460a9cb1173015df 724 SUPERFAMILY SSF52540 528 708 1.13E-34 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS06335 fcb1b1eeb7c27cb4460a9cb1173015df 724 Pfam PF13807 G-rich domain on putative tyrosine kinase 367 447 1.5E-34 T 29-03-2018 IPR032807 Tyrosine kinase, G-rich domain AM354_RS06335 fcb1b1eeb7c27cb4460a9cb1173015df 724 TIGRFAM TIGR01007 eps_fam: capsular exopolysaccharide family 510 714 3.5E-52 T 29-03-2018 IPR005702 Exopolysaccharide synthesis protein GO:0045226 AM354_RS14535 70d192fce152ae243fdff28b2ff28eea 394 Pfam PF07690 Major Facilitator Superfamily 14 350 1.2E-35 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS14535 70d192fce152ae243fdff28b2ff28eea 394 Gene3D G3DSA:1.20.1250.20 3 195 1.0E-29 T 29-03-2018 AM354_RS14535 70d192fce152ae243fdff28b2ff28eea 394 Gene3D G3DSA:1.20.1250.20 196 392 1.6E-8 T 29-03-2018 AM354_RS14535 70d192fce152ae243fdff28b2ff28eea 394 SUPERFAMILY SSF103473 7 389 2.88E-56 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS00130 3f10e579bd5f611d373f13d7cf3494ba 114 SUPERFAMILY SSF55298 3 113 6.6E-26 T 29-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like AM354_RS00130 3f10e579bd5f611d373f13d7cf3494ba 114 Pfam PF01042 Endoribonuclease L-PSP 4 113 2.1E-24 T 29-03-2018 IPR006175 YjgF/YER057c/UK114 family AM354_RS00130 3f10e579bd5f611d373f13d7cf3494ba 114 Gene3D G3DSA:3.30.1330.40 2 114 1.4E-20 T 29-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like AM354_RS16930 a056c924e6b9ea88f51acf5026ff48ea 184 PIRSF PIRSF006118 9 184 2.1E-74 T 29-03-2018 IPR010023 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase GO:0019143 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AM354_RS16930 a056c924e6b9ea88f51acf5026ff48ea 184 SUPERFAMILY SSF56784 18 176 5.98E-42 T 29-03-2018 IPR023214 HAD-like domain AM354_RS16930 a056c924e6b9ea88f51acf5026ff48ea 184 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 22 175 6.5E-71 T 29-03-2018 IPR010023 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase GO:0019143 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AM354_RS16930 a056c924e6b9ea88f51acf5026ff48ea 184 Pfam PF08282 haloacid dehalogenase-like hydrolase 90 154 5.3E-9 T 29-03-2018 IPR023214 HAD-like domain AM354_RS16930 a056c924e6b9ea88f51acf5026ff48ea 184 Gene3D G3DSA:3.40.50.1000 3 184 1.5E-26 T 29-03-2018 IPR023214 HAD-like domain AM354_RS00900 81960cb5794a9efd0285fd107a12c4f5 324 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 64 6.0E-15 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS00900 81960cb5794a9efd0285fd107a12c4f5 324 Gene3D G3DSA:3.40.190.10 91 180 3.8E-21 T 29-03-2018 AM354_RS00900 81960cb5794a9efd0285fd107a12c4f5 324 Gene3D G3DSA:3.40.190.10 254 324 0.008 T 29-03-2018 AM354_RS00900 81960cb5794a9efd0285fd107a12c4f5 324 SUPERFAMILY SSF46785 1 85 2.89E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS00900 81960cb5794a9efd0285fd107a12c4f5 324 Gene3D G3DSA:1.10.10.10 1 85 4.8E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS00900 81960cb5794a9efd0285fd107a12c4f5 324 Gene3D G3DSA:3.40.190.10 181 253 6.3E-24 T 29-03-2018 AM354_RS00900 81960cb5794a9efd0285fd107a12c4f5 324 SUPERFAMILY SSF53850 91 322 5.89E-45 T 29-03-2018 AM354_RS00900 81960cb5794a9efd0285fd107a12c4f5 324 Pfam PF03466 LysR substrate binding domain 92 292 2.2E-41 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS00900 81960cb5794a9efd0285fd107a12c4f5 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.7E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS00900 81960cb5794a9efd0285fd107a12c4f5 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.7E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS00900 81960cb5794a9efd0285fd107a12c4f5 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.7E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS13380 709ed88caa3f74760648da17fb72e973 428 SMART SM00487 28 234 8.1E-53 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AM354_RS13380 709ed88caa3f74760648da17fb72e973 428 Pfam PF00271 Helicase conserved C-terminal domain 243 351 1.4E-28 T 29-03-2018 IPR001650 Helicase, C-terminal AM354_RS13380 709ed88caa3f74760648da17fb72e973 428 SMART SM00490 270 351 1.1E-30 T 29-03-2018 IPR001650 Helicase, C-terminal AM354_RS13380 709ed88caa3f74760648da17fb72e973 428 SUPERFAMILY SSF52540 84 363 3.14E-68 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS13380 709ed88caa3f74760648da17fb72e973 428 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 163 171 - T 29-03-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site AM354_RS13380 709ed88caa3f74760648da17fb72e973 428 Gene3D G3DSA:3.40.50.300 3 234 8.1E-50 T 29-03-2018 AM354_RS13380 709ed88caa3f74760648da17fb72e973 428 Pfam PF00270 DEAD/DEAH box helicase 33 206 1.6E-44 T 29-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AM354_RS13380 709ed88caa3f74760648da17fb72e973 428 Hamap MF_00661 ATP-dependent RNA helicase RhlB [rhlB]. 8 389 50.57 T 29-03-2018 IPR023554 ATP-dependent RNA helicase RhlB type GO:0004004 AM354_RS13380 709ed88caa3f74760648da17fb72e973 428 Gene3D G3DSA:3.40.50.300 235 427 7.2E-44 T 29-03-2018 AM354_RS24170 5024d573c955b22d4fa7652e7a60768f 356 Pfam PF00583 Acetyltransferase (GNAT) family 46 110 2.4E-4 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS24170 5024d573c955b22d4fa7652e7a60768f 356 PIRSF PIRSF005751 1 348 6.3E-128 T 29-03-2018 IPR005216 Citrate lyase ligase GO:0008771 AM354_RS24170 5024d573c955b22d4fa7652e7a60768f 356 SUPERFAMILY SSF52374 146 266 8.44E-23 T 29-03-2018 AM354_RS24170 5024d573c955b22d4fa7652e7a60768f 356 SUPERFAMILY SSF52374 303 335 8.44E-23 T 29-03-2018 AM354_RS24170 5024d573c955b22d4fa7652e7a60768f 356 Gene3D G3DSA:3.40.630.30 4 124 1.5E-7 T 29-03-2018 AM354_RS24170 5024d573c955b22d4fa7652e7a60768f 356 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 113 336 2.0E-93 T 29-03-2018 AM354_RS24170 5024d573c955b22d4fa7652e7a60768f 356 Pfam PF08218 Citrate lyase ligase C-terminal domain 147 333 1.1E-76 T 29-03-2018 IPR013166 Citrate lyase ligase, C-terminal GO:0008771 AM354_RS24170 5024d573c955b22d4fa7652e7a60768f 356 SUPERFAMILY SSF55729 32 118 5.59E-11 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS24170 5024d573c955b22d4fa7652e7a60768f 356 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 147 205 4.5E-9 T 29-03-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AM354_RS24170 5024d573c955b22d4fa7652e7a60768f 356 Gene3D G3DSA:3.40.50.620 126 337 1.3E-25 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS24170 5024d573c955b22d4fa7652e7a60768f 356 SMART SM00764 147 333 8.5E-122 T 29-03-2018 IPR013166 Citrate lyase ligase, C-terminal GO:0008771 AM354_RS24170 5024d573c955b22d4fa7652e7a60768f 356 TIGRFAM TIGR00124 cit_ly_ligase: [citrate (pro-3S)-lyase] ligase 7 339 2.6E-148 T 29-03-2018 IPR005216 Citrate lyase ligase GO:0008771 AM354_RS01340 b305292b0200a6a8ff2147725e26f3be 96 Gene3D G3DSA:3.30.70.100 1 96 3.4E-22 T 29-03-2018 AM354_RS01340 b305292b0200a6a8ff2147725e26f3be 96 SUPERFAMILY SSF54909 1 94 1.88E-23 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel AM354_RS01340 b305292b0200a6a8ff2147725e26f3be 96 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 75 4.8E-19 T 29-03-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain AM354_RS06905 38a5ade65cd5522a5e5e054df3576202 387 TIGRFAM TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II 20 387 1.3E-161 T 29-03-2018 IPR011278 2-methylcitrate synthase/citrate synthase type I GO:0005737|GO:0046912 AM354_RS06905 38a5ade65cd5522a5e5e054df3576202 387 Pfam PF00285 Citrate synthase, C-terminal domain 21 369 2.4E-113 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 AM354_RS06905 38a5ade65cd5522a5e5e054df3576202 387 PRINTS PR00143 Citrate synthase signature 340 354 3.1E-36 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 AM354_RS06905 38a5ade65cd5522a5e5e054df3576202 387 PRINTS PR00143 Citrate synthase signature 263 283 3.1E-36 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 AM354_RS06905 38a5ade65cd5522a5e5e054df3576202 387 PRINTS PR00143 Citrate synthase signature 210 238 3.1E-36 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 AM354_RS06905 38a5ade65cd5522a5e5e054df3576202 387 PRINTS PR00143 Citrate synthase signature 138 151 3.1E-36 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 AM354_RS06905 38a5ade65cd5522a5e5e054df3576202 387 PRINTS PR00143 Citrate synthase signature 320 336 3.1E-36 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 AM354_RS06905 38a5ade65cd5522a5e5e054df3576202 387 PRINTS PR00143 Citrate synthase signature 188 203 3.1E-36 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 AM354_RS06905 38a5ade65cd5522a5e5e054df3576202 387 PIRSF PIRSF001369 14 387 1.0E-109 T 29-03-2018 IPR024176 Citrate synthase, bacterial-type AM354_RS06905 38a5ade65cd5522a5e5e054df3576202 387 Gene3D G3DSA:1.10.580.10 27 367 2.4E-82 T 29-03-2018 IPR016142 Citrate synthase-like, large alpha subdomain AM354_RS06905 38a5ade65cd5522a5e5e054df3576202 387 ProSitePatterns PS00480 Citrate synthase signature. 270 282 - T 29-03-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 AM354_RS06905 38a5ade65cd5522a5e5e054df3576202 387 SUPERFAMILY SSF48256 20 387 1.18E-121 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 AM354_RS16445 c60f00033ea944e152c83b3bd9f96f9e 290 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 5 288 30.388 T 29-03-2018 IPR031103 4-hydroxybenzoate octaprenyltransferase GO:0004659|GO:0006744|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 AM354_RS16445 c60f00033ea944e152c83b3bd9f96f9e 290 Pfam PF01040 UbiA prenyltransferase family 28 270 1.7E-67 T 29-03-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 AM354_RS16445 c60f00033ea944e152c83b3bd9f96f9e 290 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 10 288 2.6E-111 T 29-03-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 AM354_RS06825 3cda7362cb63df39fabb10a9eeb414c3 247 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 47 60 - T 29-03-2018 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 AM354_RS06825 3cda7362cb63df39fabb10a9eeb414c3 247 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 26 243 6.3E-70 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM354_RS06825 3cda7362cb63df39fabb10a9eeb414c3 247 Gene3D G3DSA:3.40.190.10 147 247 1.4E-18 T 29-03-2018 AM354_RS06825 3cda7362cb63df39fabb10a9eeb414c3 247 SMART SM00062 25 245 1.7E-70 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM354_RS06825 3cda7362cb63df39fabb10a9eeb414c3 247 SMART SM00079 25 244 5.6E-8 T 29-03-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 AM354_RS06825 3cda7362cb63df39fabb10a9eeb414c3 247 SUPERFAMILY SSF53850 8 244 4.3E-74 T 29-03-2018 AM354_RS06825 3cda7362cb63df39fabb10a9eeb414c3 247 Gene3D G3DSA:3.40.190.10 11 146 6.7E-38 T 29-03-2018 AM354_RS12745 48b216b10b7b0bc4f3ff21a09c705e2f 121 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 4 50 2.8E-17 T 29-03-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS12745 48b216b10b7b0bc4f3ff21a09c705e2f 121 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 121 25.559 T 29-03-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS12745 48b216b10b7b0bc4f3ff21a09c705e2f 121 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 56 121 1.0E-27 T 29-03-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS12745 48b216b10b7b0bc4f3ff21a09c705e2f 121 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 121 3.5E-48 T 29-03-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS12745 48b216b10b7b0bc4f3ff21a09c705e2f 121 SUPERFAMILY SSF54736 50 121 3.84E-25 T 29-03-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AM354_RS12745 48b216b10b7b0bc4f3ff21a09c705e2f 121 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 55 121 3.8E-31 T 29-03-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS12745 48b216b10b7b0bc4f3ff21a09c705e2f 121 Gene3D G3DSA:3.30.1390.10 51 121 7.5E-31 T 29-03-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AM354_RS12745 48b216b10b7b0bc4f3ff21a09c705e2f 121 Gene3D G3DSA:1.20.5.710 2 50 3.2E-18 T 29-03-2018 AM354_RS12745 48b216b10b7b0bc4f3ff21a09c705e2f 121 SUPERFAMILY SSF48300 3 57 2.22E-16 T 29-03-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS19370 46531420f3c82b54954602e3df592986 332 Gene3D G3DSA:1.10.1530.10 1 78 6.7E-19 T 29-03-2018 AM354_RS19370 46531420f3c82b54954602e3df592986 332 Gene3D G3DSA:3.30.1370.60 79 302 2.3E-66 T 29-03-2018 AM354_RS19370 46531420f3c82b54954602e3df592986 332 SUPERFAMILY SSF89733 1 332 3.66E-95 T 29-03-2018 IPR003767 Malate/L-lactate dehydrogenase-like GO:0008152|GO:0016491|GO:0055114 AM354_RS19370 46531420f3c82b54954602e3df592986 332 Hamap MF_00820 2,3-diketo-L-gulonate reductase [dlgD]. 1 332 73.785 T 29-03-2018 IPR023689 2,3-diketo-L-gulonate reductase GO:0016616|GO:0047559|GO:0055114|GO:0070403 KEGG: 00040+1.1.1.13+1.1.1.130|KEGG: 00053+1.1.1.130|MetaCyc: PWY-6961 AM354_RS19370 46531420f3c82b54954602e3df592986 332 Pfam PF02615 Malate/L-lactate dehydrogenase 3 330 4.2E-102 T 29-03-2018 IPR003767 Malate/L-lactate dehydrogenase-like GO:0008152|GO:0016491|GO:0055114 AM354_RS03680 7aebbdb944defa9142f762bf9713efca 187 Gene3D G3DSA:2.60.120.10 110 185 5.3E-5 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS03680 7aebbdb944defa9142f762bf9713efca 187 SUPERFAMILY SSF51182 1 186 5.78E-52 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS03680 7aebbdb944defa9142f762bf9713efca 187 Gene3D G3DSA:2.60.120.10 9 109 1.1E-36 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS03680 7aebbdb944defa9142f762bf9713efca 187 Pfam PF05962 HutD 12 178 7.1E-51 T 29-03-2018 IPR010282 Uncharacterised protein family HutD/Ves AM354_RS10695 8ff220d6d4c6b1c6a1360687d4d84e0c 234 Gene3D G3DSA:3.40.50.300 1 228 1.1E-59 T 29-03-2018 AM354_RS10695 8ff220d6d4c6b1c6a1360687d4d84e0c 234 SUPERFAMILY SSF52540 1 222 8.61E-65 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS10695 8ff220d6d4c6b1c6a1360687d4d84e0c 234 TIGRFAM TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein 2 210 2.0E-100 T 29-03-2018 IPR005968 Thiamine ABC transporter, ATP-binding protein ThiQ GO:0005524|GO:0006810|GO:0016021|GO:0042626 AM354_RS10695 8ff220d6d4c6b1c6a1360687d4d84e0c 234 SMART SM00382 24 214 7.1E-20 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS10695 8ff220d6d4c6b1c6a1360687d4d84e0c 234 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS10695 8ff220d6d4c6b1c6a1360687d4d84e0c 234 Pfam PF00005 ABC transporter 19 157 3.0E-34 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS14950 3b87a5c1f022cedb5051b64dbf90f1a9 145 Pfam PF00582 Universal stress protein family 3 138 1.5E-20 T 29-03-2018 IPR006016 UspA GO:0006950 AM354_RS14950 3b87a5c1f022cedb5051b64dbf90f1a9 145 PIRSF PIRSF006276 1 141 7.6E-54 T 29-03-2018 IPR006015 Universal stress protein A AM354_RS14950 3b87a5c1f022cedb5051b64dbf90f1a9 145 Gene3D G3DSA:3.40.50.620 2 142 8.5E-26 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS14950 3b87a5c1f022cedb5051b64dbf90f1a9 145 SUPERFAMILY SSF52402 3 139 1.0E-31 T 29-03-2018 AM354_RS08265 b7e612f2b56064a8b6508c45c0b922cc 393 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 297 313 7.3E-17 T 29-03-2018 AM354_RS08265 b7e612f2b56064a8b6508c45c0b922cc 393 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 159 174 7.3E-17 T 29-03-2018 AM354_RS08265 b7e612f2b56064a8b6508c45c0b922cc 393 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 282 297 7.3E-17 T 29-03-2018 AM354_RS08265 b7e612f2b56064a8b6508c45c0b922cc 393 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 9 31 7.3E-17 T 29-03-2018 AM354_RS08265 b7e612f2b56064a8b6508c45c0b922cc 393 Pfam PF01494 FAD binding domain 8 341 1.5E-25 T 29-03-2018 IPR002938 FAD-binding domain GO:0071949 AM354_RS08265 b7e612f2b56064a8b6508c45c0b922cc 393 SUPERFAMILY SSF51905 8 180 2.48E-58 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS08265 b7e612f2b56064a8b6508c45c0b922cc 393 SUPERFAMILY SSF51905 269 384 2.48E-58 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS08265 b7e612f2b56064a8b6508c45c0b922cc 393 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 9 392 2.7E-128 T 29-03-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 AM354_RS08265 b7e612f2b56064a8b6508c45c0b922cc 393 Gene3D G3DSA:3.50.50.60 6 365 9.2E-51 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS12315 3493eecb5612a8bbd37e8b7808975f39 416 PRINTS PR00721 Stomatin signature 148 169 3.3E-6 T 29-03-2018 IPR001972 Stomatin family GO:0016020 AM354_RS12315 3493eecb5612a8bbd37e8b7808975f39 416 PRINTS PR00721 Stomatin signature 101 123 3.3E-6 T 29-03-2018 IPR001972 Stomatin family GO:0016020 AM354_RS12315 3493eecb5612a8bbd37e8b7808975f39 416 PRINTS PR00721 Stomatin signature 183 200 3.3E-6 T 29-03-2018 IPR001972 Stomatin family GO:0016020 AM354_RS12315 3493eecb5612a8bbd37e8b7808975f39 416 TIGRFAM TIGR01933 hflK: HflK protein 96 355 3.3E-120 T 29-03-2018 IPR010201 HflK GO:0016021 AM354_RS12315 3493eecb5612a8bbd37e8b7808975f39 416 Pfam PF01145 SPFH domain / Band 7 family 98 270 1.0E-27 T 29-03-2018 IPR001107 Band 7 domain AM354_RS12315 3493eecb5612a8bbd37e8b7808975f39 416 SUPERFAMILY SSF117892 127 258 4.97E-19 T 29-03-2018 IPR001107 Band 7 domain AM354_RS12315 3493eecb5612a8bbd37e8b7808975f39 416 Pfam PF12221 Bacterial membrane protein N terminal 1 58 1.1E-14 T 29-03-2018 IPR020980 Menbrane protein HflK, N-terminal AM354_RS12315 3493eecb5612a8bbd37e8b7808975f39 416 SMART SM00244 94 254 6.9E-40 T 29-03-2018 IPR001107 Band 7 domain AM354_RS13240 c349cc00e1c20ad572ad3ada5abac962 237 Pfam PF04340 Protein of unknown function, DUF484 13 234 6.7E-74 T 29-03-2018 IPR007435 Protein of unknown function DUF484 AM354_RS13240 c349cc00e1c20ad572ad3ada5abac962 237 Gene3D G3DSA:3.30.450.40 48 233 1.9E-4 T 29-03-2018 IPR029016 GAF domain-like AM354_RS15975 6387e21530a73366bd1a731484a1d79b 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 5.1E-71 T 29-03-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 AM354_RS15975 6387e21530a73366bd1a731484a1d79b 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 35.203 T 29-03-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 AM354_RS15975 6387e21530a73366bd1a731484a1d79b 156 SUPERFAMILY SSF47973 6 149 3.27E-60 T 29-03-2018 IPR023798 Ribosomal protein S7 domain AM354_RS15975 6387e21530a73366bd1a731484a1d79b 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 1.9E-65 T 29-03-2018 IPR023798 Ribosomal protein S7 domain AM354_RS15975 6387e21530a73366bd1a731484a1d79b 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 29-03-2018 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS15975 6387e21530a73366bd1a731484a1d79b 156 PIRSF PIRSF002122 3 156 1.7E-63 T 29-03-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 AM354_RS15975 6387e21530a73366bd1a731484a1d79b 156 Gene3D G3DSA:1.10.455.10 6 156 1.6E-61 T 29-03-2018 IPR023798 Ribosomal protein S7 domain AM354_RS25110 06799880b2a2023946e5b610847949b8 239 Pfam PF09867 Uncharacterized protein conserved in bacteria (DUF2094) 12 146 1.2E-44 T 29-03-2018 IPR017748 Type VI secretion system-associated, BMAA0400 AM354_RS25110 06799880b2a2023946e5b610847949b8 239 PIRSF PIRSF029287 3 227 1.1E-48 T 29-03-2018 IPR017748 Type VI secretion system-associated, BMAA0400 AM354_RS25110 06799880b2a2023946e5b610847949b8 239 TIGRFAM TIGR03373 VI_minor_4: type VI secretion-associated protein, BMA_A0400 family 12 146 3.0E-32 T 29-03-2018 IPR017748 Type VI secretion system-associated, BMAA0400 AM354_RS25110 06799880b2a2023946e5b610847949b8 239 Gene3D G3DSA:3.40.1730.10 9 232 1.7E-62 T 29-03-2018 AM354_RS14550 086863fd9e03b746e1678bc38da78122 281 TIGRFAM TIGR00861 MIP: MIP family channel proteins 15 253 2.5E-71 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM354_RS14550 086863fd9e03b746e1678bc38da78122 281 Pfam PF00230 Major intrinsic protein 5 253 4.4E-70 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM354_RS14550 086863fd9e03b746e1678bc38da78122 281 SUPERFAMILY SSF81338 11 259 1.03E-77 T 29-03-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 AM354_RS14550 086863fd9e03b746e1678bc38da78122 281 PRINTS PR00783 Major intrinsic protein family signature 153 171 2.4E-50 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM354_RS14550 086863fd9e03b746e1678bc38da78122 281 PRINTS PR00783 Major intrinsic protein family signature 186 208 2.4E-50 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM354_RS14550 086863fd9e03b746e1678bc38da78122 281 PRINTS PR00783 Major intrinsic protein family signature 11 30 2.4E-50 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM354_RS14550 086863fd9e03b746e1678bc38da78122 281 PRINTS PR00783 Major intrinsic protein family signature 50 74 2.4E-50 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM354_RS14550 086863fd9e03b746e1678bc38da78122 281 PRINTS PR00783 Major intrinsic protein family signature 87 106 2.4E-50 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM354_RS14550 086863fd9e03b746e1678bc38da78122 281 PRINTS PR00783 Major intrinsic protein family signature 236 256 2.4E-50 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM354_RS14550 086863fd9e03b746e1678bc38da78122 281 ProSitePatterns PS00221 MIP family signature. 68 76 - T 29-03-2018 IPR022357 Major intrinsic protein, conserved site GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM354_RS14550 086863fd9e03b746e1678bc38da78122 281 Gene3D G3DSA:1.20.1080.10 3 261 4.3E-79 T 29-03-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 AM354_RS04365 1679968afc348958939b84adbf0ecd0c 92 Pfam PF10762 Protein of unknown function (DUF2583) 1 88 2.4E-45 T 29-03-2018 IPR019698 Protein of unknown function DUF2583 AM354_RS04110 450a82a935d8cc54dabaa6e3ec4ee56f 122 Pfam PF16473 3' exoribonuclease, RNase T-like 4 110 1.8E-11 T 29-03-2018 IPR033390 3'-5' exoribonuclease Rv2179c-like domain AM354_RS22975 aee5812d7d5b921fad1bc91a9a902922 245 PRINTS PR01217 Proline rich extensin signature 96 117 1.6E-10 T 29-03-2018 AM354_RS22975 aee5812d7d5b921fad1bc91a9a902922 245 PRINTS PR01217 Proline rich extensin signature 147 164 1.6E-10 T 29-03-2018 AM354_RS22975 aee5812d7d5b921fad1bc91a9a902922 245 PRINTS PR01217 Proline rich extensin signature 130 146 1.6E-10 T 29-03-2018 AM354_RS22975 aee5812d7d5b921fad1bc91a9a902922 245 PRINTS PR01217 Proline rich extensin signature 55 67 1.6E-10 T 29-03-2018 AM354_RS22975 aee5812d7d5b921fad1bc91a9a902922 245 Pfam PF05036 Sporulation related domain 167 240 9.2E-12 T 29-03-2018 IPR007730 Sporulation-related domain GO:0042834 AM354_RS22975 aee5812d7d5b921fad1bc91a9a902922 245 SUPERFAMILY SSF110997 167 240 4.18E-13 T 29-03-2018 IPR007730 Sporulation-related domain GO:0042834 AM354_RS22975 aee5812d7d5b921fad1bc91a9a902922 245 Hamap MF_02022 Cell division protein DedD [dedD]. 10 245 27.465 T 29-03-2018 IPR032898 Cell division protein DedD GO:0030428|GO:0032506 AM354_RS22975 aee5812d7d5b921fad1bc91a9a902922 245 Gene3D G3DSA:3.30.70.1070 163 240 4.7E-10 T 29-03-2018 IPR007730 Sporulation-related domain GO:0042834 AM354_RS16160 da5fec24902e76677c8c8a95a0e5832a 458 Gene3D G3DSA:3.40.50.720 233 366 1.4E-24 T 29-03-2018 AM354_RS16160 da5fec24902e76677c8c8a95a0e5832a 458 SUPERFAMILY SSF116726 390 440 3.01E-7 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM354_RS16160 da5fec24902e76677c8c8a95a0e5832a 458 Gene3D G3DSA:3.40.50.720 2 139 1.5E-26 T 29-03-2018 AM354_RS16160 da5fec24902e76677c8c8a95a0e5832a 458 Pfam PF02080 TrkA-C domain 156 225 1.3E-11 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM354_RS16160 da5fec24902e76677c8c8a95a0e5832a 458 Pfam PF02080 TrkA-C domain 390 451 2.3E-10 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM354_RS16160 da5fec24902e76677c8c8a95a0e5832a 458 PRINTS PR00335 TrkA potassium uptake protein signature 49 59 1.0E-35 T 29-03-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 AM354_RS16160 da5fec24902e76677c8c8a95a0e5832a 458 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 1.0E-35 T 29-03-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 AM354_RS16160 da5fec24902e76677c8c8a95a0e5832a 458 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 1.0E-35 T 29-03-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 AM354_RS16160 da5fec24902e76677c8c8a95a0e5832a 458 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 1.0E-35 T 29-03-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 AM354_RS16160 da5fec24902e76677c8c8a95a0e5832a 458 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 1.0E-35 T 29-03-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 AM354_RS16160 da5fec24902e76677c8c8a95a0e5832a 458 SUPERFAMILY SSF51735 1 152 5.46E-37 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS16160 da5fec24902e76677c8c8a95a0e5832a 458 Gene3D G3DSA:3.30.70.1450 367 458 4.6E-14 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM354_RS16160 da5fec24902e76677c8c8a95a0e5832a 458 SUPERFAMILY SSF116726 148 226 6.02E-10 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM354_RS16160 da5fec24902e76677c8c8a95a0e5832a 458 Pfam PF02254 TrkA-N domain 235 350 6.7E-26 T 29-03-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 AM354_RS16160 da5fec24902e76677c8c8a95a0e5832a 458 Pfam PF02254 TrkA-N domain 3 124 3.9E-30 T 29-03-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 AM354_RS16160 da5fec24902e76677c8c8a95a0e5832a 458 Gene3D G3DSA:3.30.70.1450 140 232 1.6E-15 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM354_RS16160 da5fec24902e76677c8c8a95a0e5832a 458 SUPERFAMILY SSF51735 232 376 5.05E-33 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS21975 ab168c7d751ceaed3890e20587a16c68 82 Pfam PF04226 Transglycosylase associated protein 33 81 4.5E-16 T 29-03-2018 IPR007341 Transglycosylase-associated protein GO:0016021 AM354_RS22645 75845d4c3704395293c294d1d7702172 362 TIGRFAM TIGR02282 MltB: lytic murein transglycosylase B 61 354 5.2E-122 T 29-03-2018 IPR011757 Lytic transglycosylase MltB AM354_RS22645 75845d4c3704395293c294d1d7702172 362 Gene3D G3DSA:1.10.530.10 240 360 2.1E-33 T 29-03-2018 AM354_RS22645 75845d4c3704395293c294d1d7702172 362 Pfam PF13406 Transglycosylase SLT domain 56 351 1.6E-92 T 29-03-2018 IPR031304 Transglycosylase SLT domain 2 AM354_RS22645 75845d4c3704395293c294d1d7702172 362 Gene3D G3DSA:1.10.8.350 130 234 4.0E-36 T 29-03-2018 AM354_RS22645 75845d4c3704395293c294d1d7702172 362 Gene3D G3DSA:1.10.8.350 51 129 9.9E-9 T 29-03-2018 AM354_RS22645 75845d4c3704395293c294d1d7702172 362 SUPERFAMILY SSF53955 46 353 1.37E-99 T 29-03-2018 IPR023346 Lysozyme-like domain AM354_RS18875 f726074b30b95ac0f3219d0a6439e267 140 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 4 139 25.266 T 29-03-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 AM354_RS18875 f726074b30b95ac0f3219d0a6439e267 140 Gene3D G3DSA:3.30.420.140 2 139 4.1E-41 T 29-03-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 AM354_RS18875 f726074b30b95ac0f3219d0a6439e267 140 SMART SM00732 4 104 2.9E-38 T 29-03-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 AM354_RS18875 f726074b30b95ac0f3219d0a6439e267 140 SUPERFAMILY SSF53098 4 137 8.04E-41 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS18875 f726074b30b95ac0f3219d0a6439e267 140 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 7 136 1.0E-56 T 29-03-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 AM354_RS18875 f726074b30b95ac0f3219d0a6439e267 140 Pfam PF03652 Holliday junction resolvase 5 136 9.3E-41 T 29-03-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 AM354_RS07660 a72da5cc10a4954fd0035f74cfd046bf 328 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 41 319 4.1E-15 T 29-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AM354_RS07660 a72da5cc10a4954fd0035f74cfd046bf 328 Gene3D G3DSA:1.10.287.470 118 170 4.0E-7 T 29-03-2018 AM354_RS07660 a72da5cc10a4954fd0035f74cfd046bf 328 SUPERFAMILY SSF111369 42 100 5.1E-9 T 29-03-2018 AM354_RS07660 a72da5cc10a4954fd0035f74cfd046bf 328 SUPERFAMILY SSF111369 178 321 2.62E-11 T 29-03-2018 AM354_RS07660 a72da5cc10a4954fd0035f74cfd046bf 328 Gene3D G3DSA:1.20.1600.10 179 303 1.3E-15 T 29-03-2018 AM354_RS07660 a72da5cc10a4954fd0035f74cfd046bf 328 Gene3D G3DSA:2.40.50.100 43 117 3.4E-17 T 29-03-2018 AM354_RS14485 e3664ee854f996b12770f11897454283 232 Pfam PF00072 Response regulator receiver domain 4 112 3.5E-30 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS14485 e3664ee854f996b12770f11897454283 232 SUPERFAMILY SSF52172 2 188 7.12E-41 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS14485 e3664ee854f996b12770f11897454283 232 Gene3D G3DSA:1.10.10.10 120 232 2.7E-26 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS14485 e3664ee854f996b12770f11897454283 232 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 228 1.1E-20 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS14485 e3664ee854f996b12770f11897454283 232 Gene3D G3DSA:3.40.50.2300 2 119 1.1E-38 T 29-03-2018 AM354_RS14485 e3664ee854f996b12770f11897454283 232 SMART SM00862 152 228 7.2E-22 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS14485 e3664ee854f996b12770f11897454283 232 SMART SM00448 2 111 4.1E-46 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS22305 56373927112bc9a4ab20a059c4d71eb9 293 Gene3D G3DSA:3.40.50.1100 18 129 1.6E-33 T 29-03-2018 AM354_RS22305 56373927112bc9a4ab20a059c4d71eb9 293 Gene3D G3DSA:3.40.50.1100 130 293 1.3E-47 T 29-03-2018 AM354_RS22305 56373927112bc9a4ab20a059c4d71eb9 293 TIGRFAM TIGR01138 cysM: cysteine synthase B 3 292 8.9E-154 T 29-03-2018 IPR005858 Cysteine synthase CysM GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 AM354_RS22305 56373927112bc9a4ab20a059c4d71eb9 293 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 30 48 - T 29-03-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 AM354_RS22305 56373927112bc9a4ab20a059c4d71eb9 293 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 5 281 2.5E-67 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM354_RS22305 56373927112bc9a4ab20a059c4d71eb9 293 SUPERFAMILY SSF53686 4 289 1.96E-92 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM354_RS22305 56373927112bc9a4ab20a059c4d71eb9 293 TIGRFAM TIGR01136 cysKM: cysteine synthase 5 292 1.9E-123 T 29-03-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 AM354_RS06120 2938e3443a9baccbe44c760c206a087c 218 Gene3D G3DSA:1.20.1440.100 16 82 1.6E-23 T 29-03-2018 AM354_RS06120 2938e3443a9baccbe44c760c206a087c 218 SUPERFAMILY SSF56784 1 206 4.41E-29 T 29-03-2018 IPR023214 HAD-like domain AM354_RS06120 2938e3443a9baccbe44c760c206a087c 218 Pfam PF12710 haloacid dehalogenase-like hydrolase 4 188 5.0E-40 T 29-03-2018 AM354_RS06120 2938e3443a9baccbe44c760c206a087c 218 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 3 188 1.4E-25 T 29-03-2018 AM354_RS06120 2938e3443a9baccbe44c760c206a087c 218 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 3 201 4.6E-52 T 29-03-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like AM354_RS06120 2938e3443a9baccbe44c760c206a087c 218 Gene3D G3DSA:3.40.50.1000 83 209 8.2E-7 T 29-03-2018 IPR023214 HAD-like domain AM354_RS16915 7d4f41273a56e99fc8969ae5875cf6f8 241 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 214 236 1.7E-8 T 29-03-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AM354_RS16915 7d4f41273a56e99fc8969ae5875cf6f8 241 Pfam PF00005 ABC transporter 20 166 9.8E-34 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS16915 7d4f41273a56e99fc8969ae5875cf6f8 241 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 3 241 6.5E-122 T 29-03-2018 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 AM354_RS16915 7d4f41273a56e99fc8969ae5875cf6f8 241 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS16915 7d4f41273a56e99fc8969ae5875cf6f8 241 SMART SM00382 28 231 1.0E-7 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS16915 7d4f41273a56e99fc8969ae5875cf6f8 241 Gene3D G3DSA:3.40.50.300 1 238 2.3E-63 T 29-03-2018 AM354_RS16915 7d4f41273a56e99fc8969ae5875cf6f8 241 SUPERFAMILY SSF52540 4 236 1.27E-65 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS07195 0c295cc1f78d0454562ff1b3f6b35e37 277 TIGRFAM TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein 24 270 3.3E-90 T 29-03-2018 IPR012693 ABC transporter, phosphonate import, PhnC GO:0005524|GO:0015416|GO:0015716|GO:0016020 AM354_RS07195 0c295cc1f78d0454562ff1b3f6b35e37 277 Pfam PF00005 ABC transporter 41 202 6.5E-31 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS07195 0c295cc1f78d0454562ff1b3f6b35e37 277 SMART SM00382 50 274 1.2E-7 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS07195 0c295cc1f78d0454562ff1b3f6b35e37 277 Gene3D G3DSA:3.40.50.300 21 276 5.0E-57 T 29-03-2018 AM354_RS07195 0c295cc1f78d0454562ff1b3f6b35e37 277 SUPERFAMILY SSF52540 24 263 1.3E-56 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS07195 0c295cc1f78d0454562ff1b3f6b35e37 277 ProSitePatterns PS00211 ABC transporters family signature. 174 188 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS05900 32b754f825cb61b72a73bdababbc9f32 244 SUPERFAMILY SSF53850 1 243 3.52E-71 T 29-03-2018 AM354_RS05900 32b754f825cb61b72a73bdababbc9f32 244 Gene3D G3DSA:3.40.190.10 135 244 2.1E-18 T 29-03-2018 AM354_RS05900 32b754f825cb61b72a73bdababbc9f32 244 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 5 242 3.7E-87 T 29-03-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0006810|GO:0030288 AM354_RS05900 32b754f825cb61b72a73bdababbc9f32 244 SMART SM00062 23 243 5.2E-86 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM354_RS05900 32b754f825cb61b72a73bdababbc9f32 244 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 46 59 - T 29-03-2018 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 AM354_RS05900 32b754f825cb61b72a73bdababbc9f32 244 Gene3D G3DSA:3.40.190.10 7 134 4.9E-38 T 29-03-2018 AM354_RS05900 32b754f825cb61b72a73bdababbc9f32 244 SMART SM00079 23 244 0.0022 T 29-03-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 AM354_RS05900 32b754f825cb61b72a73bdababbc9f32 244 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 24 243 1.2E-70 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM354_RS16185 02f15dc318802c92a5863d5ee4594e8f 157 Hamap MF_00598 Protein Smg [smg]. 1 157 32.582 T 29-03-2018 IPR007456 Smg AM354_RS16185 02f15dc318802c92a5863d5ee4594e8f 157 Pfam PF04361 Protein of unknown function (DUF494) 1 157 1.2E-61 T 29-03-2018 IPR007456 Smg AM354_RS20565 5cde9d99e7721dbe988ddaa3963c4045 112 SUPERFAMILY SSF159894 1 111 3.92E-55 T 29-03-2018 AM354_RS20565 5cde9d99e7721dbe988ddaa3963c4045 112 Pfam PF09400 Protein of unknown function (DUF2002) 1 111 6.4E-59 T 29-03-2018 IPR018994 Protein of unknown function DUF2002 AM354_RS09125 35525111340f3ead79d91b8597998118 115 TIGRFAM TIGR02847 CyoD: cytochrome o ubiquinol oxidase subunit IV 15 113 3.5E-38 T 29-03-2018 IPR014210 Cytochrome o ubiquinol oxidase subunit IV GO:0008827|GO:0015990|GO:0016021 AM354_RS09125 35525111340f3ead79d91b8597998118 115 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 22 98 1.6E-19 T 29-03-2018 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 AM354_RS10295 9c311488cb420659e1618ab7f55bd23f 240 PIRSF PIRSF039085 1 240 4.3E-120 T 29-03-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AM354_RS10295 9c311488cb420659e1618ab7f55bd23f 240 Gene3D G3DSA:3.40.50.300 1 240 3.2E-76 T 29-03-2018 AM354_RS10295 9c311488cb420659e1618ab7f55bd23f 240 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS10295 9c311488cb420659e1618ab7f55bd23f 240 SUPERFAMILY SSF52540 1 235 1.77E-79 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS10295 9c311488cb420659e1618ab7f55bd23f 240 SMART SM00382 26 213 1.7E-14 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS10295 9c311488cb420659e1618ab7f55bd23f 240 Pfam PF00005 ABC transporter 17 165 1.6E-34 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS03370 acabbdc1ccdcce04941af5c4e4fd8870 335 Gene3D G3DSA:1.10.3470.10 13 334 7.2E-59 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS03370 acabbdc1ccdcce04941af5c4e4fd8870 335 SUPERFAMILY SSF81345 13 330 2.35E-80 T 29-03-2018 IPR029022 ABC transporter, BtuC-like AM354_RS03370 acabbdc1ccdcce04941af5c4e4fd8870 335 Pfam PF01032 FecCD transport family 29 330 6.6E-84 T 29-03-2018 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 AM354_RS03370 acabbdc1ccdcce04941af5c4e4fd8870 335 Hamap MF_01004 Vitamin B12 import system permease protein BtuC [btuC]. 7 333 32.723 T 29-03-2018 IPR023691 ABC transporter, vitamin B12 import, permease protein BtuC GO:0015889|GO:0016020 AM354_RS05620 ff1ff564cb380fa2d343597f4a87587c 249 Pfam PF02348 Cytidylyltransferase 4 221 4.7E-69 T 29-03-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 AM354_RS05620 ff1ff564cb380fa2d343597f4a87587c 249 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 1 241 2.2E-123 T 29-03-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 AM354_RS05620 ff1ff564cb380fa2d343597f4a87587c 249 SUPERFAMILY SSF53448 3 244 8.11E-68 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS05620 ff1ff564cb380fa2d343597f4a87587c 249 Gene3D G3DSA:3.90.550.10 1 249 1.1E-52 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS05620 ff1ff564cb380fa2d343597f4a87587c 249 Hamap MF_00057 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 1 248 46.054 T 29-03-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 AM354_RS24870 3a5518c0d52612a2fbaae1881084fd5b 320 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 9 305 5.3E-86 T 29-03-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 AM354_RS24870 3a5518c0d52612a2fbaae1881084fd5b 320 SUPERFAMILY SSF54909 7 311 1.25E-106 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel AM354_RS24870 3a5518c0d52612a2fbaae1881084fd5b 320 Pfam PF04261 Dyp-type peroxidase family 9 305 3.9E-94 T 29-03-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 AM354_RS01410 9064b9d7c2c76c4ebd00a56b6c3a7077 434 Pfam PF00672 HAMP domain 164 205 2.4E-6 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM354_RS01410 9064b9d7c2c76c4ebd00a56b6c3a7077 434 Gene3D G3DSA:3.30.565.10 276 427 6.3E-33 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS01410 9064b9d7c2c76c4ebd00a56b6c3a7077 434 SMART SM00388 211 271 1.3E-8 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS01410 9064b9d7c2c76c4ebd00a56b6c3a7077 434 SMART SM00304 158 210 4.0E-6 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM354_RS01410 9064b9d7c2c76c4ebd00a56b6c3a7077 434 Gene3D G3DSA:1.10.287.130 201 267 2.2E-9 T 29-03-2018 AM354_RS01410 9064b9d7c2c76c4ebd00a56b6c3a7077 434 SUPERFAMILY SSF55874 260 423 2.75E-39 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS01410 9064b9d7c2c76c4ebd00a56b6c3a7077 434 PRINTS PR00344 Bacterial sensor protein C-terminal signature 350 364 1.2E-11 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS01410 9064b9d7c2c76c4ebd00a56b6c3a7077 434 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 403 1.2E-11 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS01410 9064b9d7c2c76c4ebd00a56b6c3a7077 434 PRINTS PR00344 Bacterial sensor protein C-terminal signature 368 378 1.2E-11 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM354_RS01410 9064b9d7c2c76c4ebd00a56b6c3a7077 434 SMART SM00387 315 425 1.6E-35 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS01410 9064b9d7c2c76c4ebd00a56b6c3a7077 434 Pfam PF00512 His Kinase A (phospho-acceptor) domain 211 270 2.7E-7 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS01410 9064b9d7c2c76c4ebd00a56b6c3a7077 434 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 320 423 1.4E-19 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS01410 9064b9d7c2c76c4ebd00a56b6c3a7077 434 SUPERFAMILY SSF47384 194 271 1.96E-12 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM354_RS08495 6cb2d3fb2b9b4fcea3896807706edbf4 282 SUPERFAMILY SSF51735 91 209 3.79E-23 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS08495 6cb2d3fb2b9b4fcea3896807706edbf4 282 SUPERFAMILY SSF50129 2 121 2.89E-22 T 29-03-2018 IPR011032 GroES-like AM354_RS08495 6cb2d3fb2b9b4fcea3896807706edbf4 282 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 3 80 7.4E-7 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AM354_RS08495 6cb2d3fb2b9b4fcea3896807706edbf4 282 Gene3D G3DSA:3.40.50.720 122 261 2.1E-13 T 29-03-2018 AM354_RS08495 6cb2d3fb2b9b4fcea3896807706edbf4 282 SMART SM00829 4 279 4.0E-6 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AM354_RS08495 6cb2d3fb2b9b4fcea3896807706edbf4 282 Gene3D G3DSA:3.90.180.10 1 121 3.2E-27 T 29-03-2018 AM354_RS08495 6cb2d3fb2b9b4fcea3896807706edbf4 282 Pfam PF00107 Zinc-binding dehydrogenase 125 205 8.1E-8 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AM354_RS17465 011502d80eb69933864bf4169f8736a2 425 Pfam PF08497 Radical SAM N-terminal 29 377 6.2E-148 T 29-03-2018 IPR013704 Uncharacterised protein family UPF0313, N-terminal AM354_RS17465 011502d80eb69933864bf4169f8736a2 425 Gene3D G3DSA:3.40.50.280 139 223 0.01 T 29-03-2018 AM354_RS17465 011502d80eb69933864bf4169f8736a2 425 TIGRFAM TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ 29 391 1.2E-152 T 29-03-2018 IPR022946 Uncharacterised protein family UPF0313 AM354_RS10985 01ecf26b4fe754a9c13b114a134c8f07 415 Gene3D G3DSA:3.30.70.270 235 412 4.1E-57 T 29-03-2018 AM354_RS10985 01ecf26b4fe754a9c13b114a134c8f07 415 SMART SM00267 240 414 2.1E-61 T 29-03-2018 IPR000160 GGDEF domain AM354_RS10985 01ecf26b4fe754a9c13b114a134c8f07 415 Pfam PF17152 Periplasmic sensor domain 47 147 1.2E-33 T 29-03-2018 IPR033417 Periplasmic sensor domain CHASE8 AM354_RS10985 01ecf26b4fe754a9c13b114a134c8f07 415 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 247 406 5.3E-43 T 29-03-2018 IPR000160 GGDEF domain AM354_RS10985 01ecf26b4fe754a9c13b114a134c8f07 415 Pfam PF00990 Diguanylate cyclase, GGDEF domain 251 404 1.1E-45 T 29-03-2018 IPR000160 GGDEF domain AM354_RS10985 01ecf26b4fe754a9c13b114a134c8f07 415 SUPERFAMILY SSF55073 256 410 1.57E-44 T 29-03-2018 IPR029787 Nucleotide cyclase AM354_RS14300 634f189ae5cf6e6dd0f57f78b9f83350 213 SUPERFAMILY SSF53271 2 212 9.37E-50 T 29-03-2018 IPR029057 Phosphoribosyltransferase-like AM354_RS14300 634f189ae5cf6e6dd0f57f78b9f83350 213 Gene3D G3DSA:3.40.50.2020 1 193 2.2E-48 T 29-03-2018 AM354_RS14300 634f189ae5cf6e6dd0f57f78b9f83350 213 Pfam PF00156 Phosphoribosyl transferase domain 48 162 1.7E-11 T 29-03-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AM354_RS14300 634f189ae5cf6e6dd0f57f78b9f83350 213 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 10 187 4.7E-68 T 29-03-2018 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AM354_RS14300 634f189ae5cf6e6dd0f57f78b9f83350 213 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 213 36.49 T 29-03-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AM354_RS23235 9bd9c4d69f7c19d274baa8c9bfd67ae3 256 TIGRFAM TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 15 252 9.5E-81 T 29-03-2018 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 AM354_RS23235 9bd9c4d69f7c19d274baa8c9bfd67ae3 256 Pfam PF12697 Alpha/beta hydrolase family 18 247 1.1E-18 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS23235 9bd9c4d69f7c19d274baa8c9bfd67ae3 256 Gene3D G3DSA:3.40.50.1820 8 253 2.5E-41 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS23235 9bd9c4d69f7c19d274baa8c9bfd67ae3 256 SUPERFAMILY SSF53474 9 252 1.23E-43 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS23235 9bd9c4d69f7c19d274baa8c9bfd67ae3 256 Hamap MF_01660 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [menH]. 9 253 34.563 T 29-03-2018 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 AM354_RS24200 f0ef2761fdeae36fa2563e18d4a57990 487 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 25 479 2.6E-161 T 29-03-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 AM354_RS24200 f0ef2761fdeae36fa2563e18d4a57990 487 Pfam PF00939 Sodium:sulfate symporter transmembrane region 5 485 8.6E-172 T 29-03-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 AM354_RS24200 f0ef2761fdeae36fa2563e18d4a57990 487 PIRSF PIRSF002457 1 487 4.4E-155 T 29-03-2018 IPR030676 Citrate carrier CitT-related AM354_RS23760 af3fe6f51b82446d2876c50be934963b 255 Gene3D G3DSA:3.40.80.10 17 172 1.6E-43 T 29-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 AM354_RS23760 af3fe6f51b82446d2876c50be934963b 255 SUPERFAMILY SSF55846 11 174 9.55E-45 T 29-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 AM354_RS23760 af3fe6f51b82446d2876c50be934963b 255 SMART SM00644 7 158 1.5E-33 T 29-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 AM354_RS23760 af3fe6f51b82446d2876c50be934963b 255 SUPERFAMILY SSF47090 179 254 2.31E-18 T 29-03-2018 IPR002477 Peptidoglycan binding-like AM354_RS23760 af3fe6f51b82446d2876c50be934963b 255 Gene3D G3DSA:1.10.101.10 173 255 2.3E-10 T 29-03-2018 IPR002477 Peptidoglycan binding-like AM354_RS23760 af3fe6f51b82446d2876c50be934963b 255 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 17 159 8.6E-27 T 29-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 AM354_RS19730 2cfe657234183e230998c04a20abb085 405 Gene3D G3DSA:1.20.1250.20 1 195 5.4E-29 T 29-03-2018 AM354_RS19730 2cfe657234183e230998c04a20abb085 405 Pfam PF07690 Major Facilitator Superfamily 5 351 2.6E-43 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS19730 2cfe657234183e230998c04a20abb085 405 SUPERFAMILY SSF103473 2 385 1.57E-67 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS19730 2cfe657234183e230998c04a20abb085 405 Gene3D G3DSA:1.20.1250.20 196 390 1.3E-27 T 29-03-2018 AM354_RS02835 2ac1341f998c1561b39cb7d6929a9791 343 Gene3D G3DSA:1.10.260.40 6 57 1.2E-21 T 29-03-2018 AM354_RS02835 2ac1341f998c1561b39cb7d6929a9791 343 Gene3D G3DSA:3.40.50.2300 178 322 6.4E-37 T 29-03-2018 AM354_RS02835 2ac1341f998c1561b39cb7d6929a9791 343 SUPERFAMILY SSF53822 65 342 2.55E-60 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS02835 2ac1341f998c1561b39cb7d6929a9791 343 SMART SM00354 5 75 9.0E-33 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS02835 2ac1341f998c1561b39cb7d6929a9791 343 Pfam PF00356 Bacterial regulatory proteins, lacI family 7 52 4.6E-18 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS02835 2ac1341f998c1561b39cb7d6929a9791 343 SUPERFAMILY SSF47413 4 63 1.18E-17 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS02835 2ac1341f998c1561b39cb7d6929a9791 343 ProSitePatterns PS00356 LacI-type HTH domain signature. 8 26 - T 29-03-2018 AM354_RS02835 2ac1341f998c1561b39cb7d6929a9791 343 Gene3D G3DSA:3.40.50.2300 58 177 3.2E-32 T 29-03-2018 AM354_RS02835 2ac1341f998c1561b39cb7d6929a9791 343 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 64 323 2.1E-58 T 29-03-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain AM354_RS19415 f47ec6163a127651c3c750c0219e7fde 218 SUPERFAMILY SSF100950 1 146 7.33E-48 T 29-03-2018 AM354_RS19415 f47ec6163a127651c3c750c0219e7fde 218 Gene3D G3DSA:3.40.50.1360 1 137 2.1E-40 T 29-03-2018 AM354_RS19415 f47ec6163a127651c3c750c0219e7fde 218 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 49 213 9.2E-59 T 29-03-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AM354_RS19415 f47ec6163a127651c3c750c0219e7fde 218 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 6 215 7.9E-71 T 29-03-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AM354_RS19415 f47ec6163a127651c3c750c0219e7fde 218 Gene3D G3DSA:3.30.70.260 138 196 2.8E-22 T 29-03-2018 AM354_RS19415 f47ec6163a127651c3c750c0219e7fde 218 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 3 217 34.354 T 29-03-2018 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AM354_RS19415 f47ec6163a127651c3c750c0219e7fde 218 SUPERFAMILY SSF75445 127 198 7.06E-24 T 29-03-2018 AM354_RS24530 4f26f68920713d07b6a92505dd817499 151 SUPERFAMILY SSF49401 27 151 6.96E-24 T 29-03-2018 IPR008966 Adhesion domain AM354_RS24530 4f26f68920713d07b6a92505dd817499 151 Pfam PF00419 Fimbrial protein 20 151 1.3E-18 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS24530 4f26f68920713d07b6a92505dd817499 151 Gene3D G3DSA:2.60.40.1090 16 151 1.4E-19 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS16525 03e823caf48f1271bd1281f0286a8b8b 138 PIRSF PIRSF004681 1 138 3.6E-44 T 29-03-2018 IPR001602 Uncharacterised protein family UPF0047 AM354_RS16525 03e823caf48f1271bd1281f0286a8b8b 138 TIGRFAM TIGR00149 TIGR00149_YjbQ: secondary thiamine-phosphate synthase enzyme 4 138 3.2E-48 T 29-03-2018 IPR001602 Uncharacterised protein family UPF0047 AM354_RS16525 03e823caf48f1271bd1281f0286a8b8b 138 ProSitePatterns PS01314 Uncharacterized protein family UPF0047 signature. 99 117 - T 29-03-2018 IPR001602 Uncharacterised protein family UPF0047 AM354_RS16525 03e823caf48f1271bd1281f0286a8b8b 138 Gene3D G3DSA:2.60.120.460 1 138 1.9E-57 T 29-03-2018 IPR001602 Uncharacterised protein family UPF0047 AM354_RS16525 03e823caf48f1271bd1281f0286a8b8b 138 Pfam PF01894 Uncharacterised protein family UPF0047 19 134 6.7E-37 T 29-03-2018 IPR001602 Uncharacterised protein family UPF0047 AM354_RS16525 03e823caf48f1271bd1281f0286a8b8b 138 SUPERFAMILY SSF111038 1 138 1.7E-47 T 29-03-2018 IPR001602 Uncharacterised protein family UPF0047 AM354_RS24095 db6c9b2b3165582ba3c596e50753c5fc 276 SMART SM00646 112 267 4.8E-55 T 29-03-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 AM354_RS24095 db6c9b2b3165582ba3c596e50753c5fc 276 SUPERFAMILY SSF53187 194 270 9.42E-51 T 29-03-2018 AM354_RS24095 db6c9b2b3165582ba3c596e50753c5fc 276 SUPERFAMILY SSF53187 51 146 9.42E-51 T 29-03-2018 AM354_RS24095 db6c9b2b3165582ba3c596e50753c5fc 276 Gene3D G3DSA:3.40.630.40 48 275 6.5E-55 T 29-03-2018 AM354_RS24095 db6c9b2b3165582ba3c596e50753c5fc 276 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 53 267 9.0E-49 T 29-03-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 AM354_RS07245 910a418160df1cfaaff28e76ab10790a 214 Gene3D G3DSA:1.10.357.10 72 203 1.5E-24 T 29-03-2018 AM354_RS07245 910a418160df1cfaaff28e76ab10790a 214 Gene3D G3DSA:1.10.260.40 46 71 2.2E-6 T 29-03-2018 AM354_RS07245 910a418160df1cfaaff28e76ab10790a 214 SUPERFAMILY SSF48498 92 205 2.38E-26 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AM354_RS07245 910a418160df1cfaaff28e76ab10790a 214 Gene3D G3DSA:1.10.10.60 9 45 1.1E-11 T 29-03-2018 AM354_RS07245 910a418160df1cfaaff28e76ab10790a 214 Pfam PF00440 Bacterial regulatory proteins, tetR family 25 70 1.3E-12 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS07245 910a418160df1cfaaff28e76ab10790a 214 SUPERFAMILY SSF46689 12 94 2.15E-17 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS03615 145bfcf262dede8d0ebea62f269a0eda 780 Pfam PF00577 Outer membrane usher protein 177 682 1.7E-37 T 29-03-2018 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 AM354_RS03615 145bfcf262dede8d0ebea62f269a0eda 780 Pfam PF13953 PapC C-terminal domain 705 766 1.0E-10 T 29-03-2018 IPR025949 PapC-like, C-terminal domain AM354_RS11390 50bac6abc6efafb6ebad935f3c0878f2 747 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 730 747 - T 29-03-2018 IPR010917 TonB-dependent receptor, conserved site AM354_RS11390 50bac6abc6efafb6ebad935f3c0878f2 747 Gene3D G3DSA:2.40.170.20 165 747 1.6E-61 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS11390 50bac6abc6efafb6ebad935f3c0878f2 747 SUPERFAMILY SSF56935 21 747 6.96E-93 T 29-03-2018 AM354_RS11390 50bac6abc6efafb6ebad935f3c0878f2 747 Pfam PF00593 TonB dependent receptor 244 745 3.9E-42 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS11390 50bac6abc6efafb6ebad935f3c0878f2 747 Pfam PF07715 TonB-dependent Receptor Plug Domain 48 146 3.3E-12 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS11390 50bac6abc6efafb6ebad935f3c0878f2 747 Gene3D G3DSA:2.170.130.10 21 164 1.9E-13 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS03455 8f8dbbb852757cbb2c1ff35d742de29b 221 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 76 104 - T 29-03-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 AM354_RS03455 8f8dbbb852757cbb2c1ff35d742de29b 221 Pfam PF01464 Transglycosylase SLT domain 58 180 1.1E-27 T 29-03-2018 IPR008258 Transglycosylase SLT domain 1 AM354_RS03455 8f8dbbb852757cbb2c1ff35d742de29b 221 Gene3D G3DSA:1.10.530.10 46 219 6.1E-31 T 29-03-2018 AM354_RS03455 8f8dbbb852757cbb2c1ff35d742de29b 221 SUPERFAMILY SSF53955 54 219 6.76E-30 T 29-03-2018 IPR023346 Lysozyme-like domain AM354_RS20495 b9e5234fb11fbbe19dfde6737f1fbcac 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM354_RS20495 b9e5234fb11fbbe19dfde6737f1fbcac 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 4.2E-13 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS20495 b9e5234fb11fbbe19dfde6737f1fbcac 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 4.2E-13 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS20495 b9e5234fb11fbbe19dfde6737f1fbcac 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 4.2E-13 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS20495 b9e5234fb11fbbe19dfde6737f1fbcac 246 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 245 7.7E-64 T 29-03-2018 AM354_RS20495 b9e5234fb11fbbe19dfde6737f1fbcac 246 SUPERFAMILY SSF51735 8 245 1.29E-82 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS20495 b9e5234fb11fbbe19dfde6737f1fbcac 246 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 185 5.3E-5 T 29-03-2018 AM354_RS20495 b9e5234fb11fbbe19dfde6737f1fbcac 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 4.1E-41 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS20495 b9e5234fb11fbbe19dfde6737f1fbcac 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 4.1E-41 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS20495 b9e5234fb11fbbe19dfde6737f1fbcac 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 4.1E-41 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS20495 b9e5234fb11fbbe19dfde6737f1fbcac 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 4.1E-41 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS20495 b9e5234fb11fbbe19dfde6737f1fbcac 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 4.1E-41 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS20495 b9e5234fb11fbbe19dfde6737f1fbcac 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 4.1E-41 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS20495 b9e5234fb11fbbe19dfde6737f1fbcac 246 Gene3D G3DSA:3.40.50.720 2 41 8.4E-8 T 29-03-2018 AM354_RS20495 b9e5234fb11fbbe19dfde6737f1fbcac 246 Gene3D G3DSA:3.40.50.720 42 246 5.6E-66 T 29-03-2018 AM354_RS17410 02087434100bf1814d60a8e2b96f463a 102 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 84 7.0E-19 T 29-03-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain AM354_RS17410 02087434100bf1814d60a8e2b96f463a 102 SUPERFAMILY SSF54909 1 97 2.68E-30 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel AM354_RS17410 02087434100bf1814d60a8e2b96f463a 102 Gene3D G3DSA:3.30.70.100 1 100 1.4E-21 T 29-03-2018 AM354_RS04905 55965e8e4692a7d5dc54dd69c87e2fbb 208 SUPERFAMILY SSF46894 124 188 2.35E-13 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS04905 55965e8e4692a7d5dc54dd69c87e2fbb 208 Pfam PF00196 Bacterial regulatory proteins, luxR family 131 183 2.0E-14 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS04905 55965e8e4692a7d5dc54dd69c87e2fbb 208 SMART SM00421 128 185 2.6E-8 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS04905 55965e8e4692a7d5dc54dd69c87e2fbb 208 Gene3D G3DSA:1.10.10.10 52 190 2.5E-10 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS03515 5c85c5ce4f7ab3e1aa76ba18d07b290a 269 SUPERFAMILY SSF56784 4 259 5.63E-54 T 29-03-2018 IPR023214 HAD-like domain AM354_RS03515 5c85c5ce4f7ab3e1aa76ba18d07b290a 269 Hamap MF_01375 Phosphonoacetaldehyde hydrolase [phnX]. 1 269 134.301 T 29-03-2018 IPR006323 Phosphonoacetaldehyde hydrolase GO:0019700|GO:0050194 KEGG: 00440+3.11.1.1 AM354_RS03515 5c85c5ce4f7ab3e1aa76ba18d07b290a 269 Gene3D G3DSA:1.10.150.240 22 89 6.7E-31 T 29-03-2018 IPR023198 Phosphoglycolate phosphatase, domain 2 AM354_RS03515 5c85c5ce4f7ab3e1aa76ba18d07b290a 269 Gene3D G3DSA:3.40.50.1000 90 258 9.6E-21 T 29-03-2018 IPR023214 HAD-like domain AM354_RS03515 5c85c5ce4f7ab3e1aa76ba18d07b290a 269 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 35 203 5.3E-15 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS03515 5c85c5ce4f7ab3e1aa76ba18d07b290a 269 TIGRFAM TIGR01422 phosphonatase: phosphonoacetaldehyde hydrolase 3 257 4.1E-112 T 29-03-2018 IPR006323 Phosphonoacetaldehyde hydrolase GO:0019700|GO:0050194 KEGG: 00440+3.11.1.1 AM354_RS19530 6e0ef75ee4f058d33c7cad4ada704e64 217 Gene3D G3DSA:3.30.70.100 114 168 0.31 T 29-03-2018 AM354_RS19530 6e0ef75ee4f058d33c7cad4ada704e64 217 Gene3D G3DSA:3.30.70.100 3 106 3.4E-8 T 29-03-2018 AM354_RS01170 88151fb1c00b46900bf0089d7afd8dad 270 Gene3D G3DSA:3.40.50.300 1 259 1.5E-68 T 29-03-2018 AM354_RS01170 88151fb1c00b46900bf0089d7afd8dad 270 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS01170 88151fb1c00b46900bf0089d7afd8dad 270 Pfam PF00005 ABC transporter 30 177 5.2E-33 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS01170 88151fb1c00b46900bf0089d7afd8dad 270 SMART SM00382 38 227 6.5E-13 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS01170 88151fb1c00b46900bf0089d7afd8dad 270 SUPERFAMILY SSF52540 4 248 1.17E-58 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS22220 3095da532adcc35d88055f115fcb1789 469 Pfam PF00324 Amino acid permease 19 457 1.0E-117 T 29-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 AM354_RS22220 3095da532adcc35d88055f115fcb1789 469 PIRSF PIRSF006060 1 462 2.7E-79 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM354_RS22220 3095da532adcc35d88055f115fcb1789 469 ProSitePatterns PS00218 Amino acid permeases signature. 44 75 - T 29-03-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 AM354_RS12810 97eb7129cbddad829919b10b6fea855f 316 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 90 243 5.3E-15 T 29-03-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0008152|GO:0016301 Reactome: R-HSA-73614 AM354_RS12810 97eb7129cbddad829919b10b6fea855f 316 Gene3D G3DSA:3.40.50.300 9 316 1.3E-50 T 29-03-2018 AM354_RS12810 97eb7129cbddad829919b10b6fea855f 316 Hamap MF_00215 Pantothenate kinase [coaA]. 1 316 187.812 T 29-03-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 AM354_RS12810 97eb7129cbddad829919b10b6fea855f 316 PIRSF PIRSF000545 1 316 1.2E-146 T 29-03-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 AM354_RS12810 97eb7129cbddad829919b10b6fea855f 316 SUPERFAMILY SSF52540 10 315 6.1E-75 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS12810 97eb7129cbddad829919b10b6fea855f 316 TIGRFAM TIGR00554 panK_bact: pantothenate kinase 10 316 5.8E-168 T 29-03-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 AM354_RS13270 c92e8f7805694b6b7550d4e26a82cf96 246 Gene3D G3DSA:3.40.50.10090 121 246 1.5E-22 T 29-03-2018 AM354_RS13270 c92e8f7805694b6b7550d4e26a82cf96 246 Gene3D G3DSA:3.40.50.10090 1 118 9.9E-19 T 29-03-2018 AM354_RS13270 c92e8f7805694b6b7550d4e26a82cf96 246 SUPERFAMILY SSF69618 1 245 3.92E-55 T 29-03-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AM354_RS13270 c92e8f7805694b6b7550d4e26a82cf96 246 Pfam PF02602 Uroporphyrinogen-III synthase HemD 14 242 3.5E-41 T 29-03-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AM354_RS08635 345f66e261632ea6ae5abfe7f12cd0c7 261 Gene3D G3DSA:2.60.120.10 1 260 2.4E-38 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS08635 345f66e261632ea6ae5abfe7f12cd0c7 261 TIGRFAM TIGR03214 ura-cupin: putative allantoin catabolism protein 3 260 4.5E-107 T 29-03-2018 IPR017627 Conserved hypothetical protein CHP03214, putative allantoin-urate catabolism protein KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 AM354_RS08635 345f66e261632ea6ae5abfe7f12cd0c7 261 Pfam PF07883 Cupin domain 185 246 1.2E-7 T 29-03-2018 IPR013096 Cupin 2, conserved barrel AM354_RS08635 345f66e261632ea6ae5abfe7f12cd0c7 261 SUPERFAMILY SSF51182 16 259 3.13E-60 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS01875 670423848d442272d89fbd5cda7b2a11 486 Gene3D G3DSA:3.30.420.40 236 485 9.6E-48 T 29-03-2018 AM354_RS01875 670423848d442272d89fbd5cda7b2a11 486 PIRSF PIRSF000538 3 483 9.3E-110 T 29-03-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AM354_RS01875 670423848d442272d89fbd5cda7b2a11 486 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 248 434 7.2E-32 T 29-03-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AM354_RS01875 670423848d442272d89fbd5cda7b2a11 486 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 6 234 3.0E-52 T 29-03-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AM354_RS01875 670423848d442272d89fbd5cda7b2a11 486 Gene3D G3DSA:3.30.420.40 2 235 1.2E-66 T 29-03-2018 AM354_RS01875 670423848d442272d89fbd5cda7b2a11 486 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 350 370 - T 29-03-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AM354_RS01875 670423848d442272d89fbd5cda7b2a11 486 SUPERFAMILY SSF53067 241 470 6.66E-44 T 29-03-2018 AM354_RS01875 670423848d442272d89fbd5cda7b2a11 486 SUPERFAMILY SSF53067 6 242 3.28E-70 T 29-03-2018 AM354_RS06860 231ca4bb9bb78c26bfedf2d04995ab34 86 Pfam PF07338 Protein of unknown function (DUF1471) 35 86 7.1E-17 T 29-03-2018 IPR010854 Domain of unknown function DUF1471 AM354_RS06860 231ca4bb9bb78c26bfedf2d04995ab34 86 Gene3D G3DSA:3.30.1660.10 22 86 1.7E-19 T 29-03-2018 IPR025543 Dodecin-like AM354_RS06860 231ca4bb9bb78c26bfedf2d04995ab34 86 SUPERFAMILY SSF159871 3 86 3.79E-23 T 29-03-2018 IPR010854 Domain of unknown function DUF1471 AM354_RS20180 9f92eb5de4d4e5595028e2bce017236f 283 SUPERFAMILY SSF54713 56 139 1.63E-20 T 29-03-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AM354_RS20180 9f92eb5de4d4e5595028e2bce017236f 283 Pfam PF00889 Elongation factor TS 71 263 3.4E-67 T 29-03-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AM354_RS20180 9f92eb5de4d4e5595028e2bce017236f 283 SUPERFAMILY SSF46934 4 54 1.53E-18 T 29-03-2018 IPR009060 UBA-like GO:0005515 AM354_RS20180 9f92eb5de4d4e5595028e2bce017236f 283 Gene3D G3DSA:1.10.8.10 1 56 8.0E-24 T 29-03-2018 AM354_RS20180 9f92eb5de4d4e5595028e2bce017236f 283 Gene3D G3DSA:3.30.479.20 58 147 5.5E-16 T 29-03-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AM354_RS20180 9f92eb5de4d4e5595028e2bce017236f 283 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 282 2.2E-120 T 29-03-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AM354_RS20180 9f92eb5de4d4e5595028e2bce017236f 283 ProSitePatterns PS01126 Elongation factor Ts signature 1. 12 27 - T 29-03-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AM354_RS20180 9f92eb5de4d4e5595028e2bce017236f 283 ProSitePatterns PS01127 Elongation factor Ts signature 2. 75 85 - T 29-03-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AM354_RS20180 9f92eb5de4d4e5595028e2bce017236f 283 SUPERFAMILY SSF54713 142 281 8.18E-54 T 29-03-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AM354_RS20180 9f92eb5de4d4e5595028e2bce017236f 283 Gene3D G3DSA:3.30.479.20 148 279 1.6E-49 T 29-03-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AM354_RS20180 9f92eb5de4d4e5595028e2bce017236f 283 Hamap MF_00050 Elongation factor Ts [tsf]. 1 280 79.691 T 29-03-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AM354_RS14340 328066c83ec098d222ce72a4bfce8134 161 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 86 102 2.8E-50 T 29-03-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AM354_RS14340 328066c83ec098d222ce72a4bfce8134 161 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 50 74 2.8E-50 T 29-03-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AM354_RS14340 328066c83ec098d222ce72a4bfce8134 161 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 21 42 2.8E-50 T 29-03-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AM354_RS14340 328066c83ec098d222ce72a4bfce8134 161 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 3 21 2.8E-50 T 29-03-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AM354_RS14340 328066c83ec098d222ce72a4bfce8134 161 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 113 135 2.8E-50 T 29-03-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AM354_RS14340 328066c83ec098d222ce72a4bfce8134 161 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 3 159 35.776 T 29-03-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AM354_RS14340 328066c83ec098d222ce72a4bfce8134 161 Pfam PF01467 Cytidylyltransferase-like 6 134 6.1E-19 T 29-03-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AM354_RS14340 328066c83ec098d222ce72a4bfce8134 161 Gene3D G3DSA:3.40.50.620 2 159 2.2E-32 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS14340 328066c83ec098d222ce72a4bfce8134 161 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 5 60 1.3E-15 T 29-03-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AM354_RS14340 328066c83ec098d222ce72a4bfce8134 161 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 5 157 4.2E-59 T 29-03-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AM354_RS14340 328066c83ec098d222ce72a4bfce8134 161 SUPERFAMILY SSF52374 4 156 7.24E-44 T 29-03-2018 AM354_RS09085 2aa1e0416fad9e296b1efb566fcc47b5 207 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 16 206 45.014 T 29-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AM354_RS09085 2aa1e0416fad9e296b1efb566fcc47b5 207 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 14 205 2.4E-110 T 29-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AM354_RS09085 2aa1e0416fad9e296b1efb566fcc47b5 207 PRINTS PR00127 Clp protease catalytic subunit P signature 72 92 8.4E-54 T 29-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AM354_RS09085 2aa1e0416fad9e296b1efb566fcc47b5 207 PRINTS PR00127 Clp protease catalytic subunit P signature 103 120 8.4E-54 T 29-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AM354_RS09085 2aa1e0416fad9e296b1efb566fcc47b5 207 PRINTS PR00127 Clp protease catalytic subunit P signature 124 143 8.4E-54 T 29-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AM354_RS09085 2aa1e0416fad9e296b1efb566fcc47b5 207 PRINTS PR00127 Clp protease catalytic subunit P signature 32 47 8.4E-54 T 29-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AM354_RS09085 2aa1e0416fad9e296b1efb566fcc47b5 207 PRINTS PR00127 Clp protease catalytic subunit P signature 181 200 8.4E-54 T 29-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AM354_RS09085 2aa1e0416fad9e296b1efb566fcc47b5 207 Gene3D G3DSA:3.90.226.10 15 207 2.8E-49 T 29-03-2018 AM354_RS09085 2aa1e0416fad9e296b1efb566fcc47b5 207 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 103 114 - T 29-03-2018 IPR018215 ClpP, Ser active site AM354_RS09085 2aa1e0416fad9e296b1efb566fcc47b5 207 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 125 138 - T 29-03-2018 IPR033135 ClpP, histidine active site AM354_RS09085 2aa1e0416fad9e296b1efb566fcc47b5 207 SUPERFAMILY SSF52096 23 206 7.18E-77 T 29-03-2018 IPR029045 ClpP/crotonase-like domain AM354_RS09085 2aa1e0416fad9e296b1efb566fcc47b5 207 Pfam PF00574 Clp protease 25 205 4.5E-91 T 29-03-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA AM354_RS06670 db8b1182eb85eae5e0f26d5a99286ad8 203 Gene3D G3DSA:1.20.950.20 5 203 3.2E-36 T 29-03-2018 AM354_RS06670 db8b1182eb85eae5e0f26d5a99286ad8 203 SUPERFAMILY SSF81342 9 203 5.89E-35 T 29-03-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 AM354_RS06670 db8b1182eb85eae5e0f26d5a99286ad8 203 Pfam PF01292 Prokaryotic cytochrome b561 13 202 1.7E-25 T 29-03-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 AM354_RS06670 db8b1182eb85eae5e0f26d5a99286ad8 203 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 16 39 4.9E-5 T 29-03-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 AM354_RS06670 db8b1182eb85eae5e0f26d5a99286ad8 203 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 168 190 4.9E-5 T 29-03-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 AM354_RS01140 94dfaaa62e406b3d8a992368e103a9ea 768 PIRSF PIRSF000144 1 763 0.0 T 29-03-2018 AM354_RS01140 94dfaaa62e406b3d8a992368e103a9ea 768 Pfam PF01568 Molydopterin dinucleotide binding domain 645 752 8.3E-14 T 29-03-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 AM354_RS01140 94dfaaa62e406b3d8a992368e103a9ea 768 Gene3D G3DSA:2.40.40.20 635 766 6.6E-25 T 29-03-2018 AM354_RS01140 94dfaaa62e406b3d8a992368e103a9ea 768 TIGRFAM TIGR01701 Fdhalpha-like: oxidoreductase alpha (molybdopterin) subunit 14 758 3.7E-281 T 29-03-2018 IPR010046 Oxidoreductase alpha (molybdopterin) subunit GO:0008863|GO:0030151|GO:0051539 AM354_RS01140 94dfaaa62e406b3d8a992368e103a9ea 768 SUPERFAMILY SSF53706 48 630 3.93E-142 T 29-03-2018 AM354_RS01140 94dfaaa62e406b3d8a992368e103a9ea 768 Gene3D G3DSA:3.40.50.740 110 278 1.5E-37 T 29-03-2018 AM354_RS01140 94dfaaa62e406b3d8a992368e103a9ea 768 Gene3D G3DSA:3.40.50.740 327 615 6.0E-44 T 29-03-2018 AM354_RS01140 94dfaaa62e406b3d8a992368e103a9ea 768 Pfam PF00384 Molybdopterin oxidoreductase 109 494 5.3E-23 T 29-03-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS01140 94dfaaa62e406b3d8a992368e103a9ea 768 SUPERFAMILY SSF50692 639 761 1.06E-20 T 29-03-2018 IPR009010 Aspartate decarboxylase-like domain AM354_RS23870 5a2dd7af00bb4e1e0323c557c5dd0127 359 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 3 354 4.3E-91 T 29-03-2018 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 AM354_RS23870 5a2dd7af00bb4e1e0323c557c5dd0127 359 Pfam PF03739 Predicted permease YjgP/YjgQ family 6 354 1.7E-58 T 29-03-2018 IPR005495 Permease LptG/LptF-related GO:0016021 AM354_RS18515 e229aec05b14aa8f8360b807c386ce8a 78 ProDom PD007968 PLASMID MERE URF-1 RESISTANCE MERCURY MERCURIC DELTA URF1 PRECURSOR TNIB 18 78 6.0E-28 T 29-03-2018 IPR007746 MerE GO:0015097|GO:0015694|GO:0016020 AM354_RS18515 e229aec05b14aa8f8360b807c386ce8a 78 Pfam PF05052 MerE protein 1 75 1.5E-48 T 29-03-2018 IPR007746 MerE GO:0015097|GO:0015694|GO:0016020 AM354_RS10645 8b4f20b1da24abc500cd2ccd99abb94b 524 Gene3D G3DSA:3.20.20.70 1 332 4.3E-111 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS10645 8b4f20b1da24abc500cd2ccd99abb94b 524 SMART SM00917 369 500 2.4E-40 T 29-03-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AM354_RS10645 8b4f20b1da24abc500cd2ccd99abb94b 524 Hamap MF_01025 2-isopropylmalate synthase [leuA]. 2 509 43.748 T 29-03-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AM354_RS10645 8b4f20b1da24abc500cd2ccd99abb94b 524 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 12 28 - T 29-03-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AM354_RS10645 8b4f20b1da24abc500cd2ccd99abb94b 524 SUPERFAMILY SSF51569 1 291 2.93E-101 T 29-03-2018 AM354_RS10645 8b4f20b1da24abc500cd2ccd99abb94b 524 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 199 212 - T 29-03-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AM354_RS10645 8b4f20b1da24abc500cd2ccd99abb94b 524 Pfam PF08502 LeuA allosteric (dimerisation) domain 369 499 8.1E-37 T 29-03-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AM354_RS10645 8b4f20b1da24abc500cd2ccd99abb94b 524 SUPERFAMILY SSF110921 391 499 6.02E-27 T 29-03-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AM354_RS10645 8b4f20b1da24abc500cd2ccd99abb94b 524 TIGRFAM TIGR00973 leuA_bact: 2-isopropylmalate synthase 4 497 8.7E-256 T 29-03-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AM354_RS10645 8b4f20b1da24abc500cd2ccd99abb94b 524 Pfam PF00682 HMGL-like 4 273 2.8E-107 T 29-03-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 AM354_RS21630 fdd24842c69f1df9136163b6c7b10a62 120 SUPERFAMILY SSF46785 8 114 1.02E-25 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS21630 fdd24842c69f1df9136163b6c7b10a62 120 Pfam PF01638 HxlR-like helix-turn-helix 21 106 1.8E-21 T 29-03-2018 IPR002577 Helix-turn-helix, HxlR type AM354_RS21630 fdd24842c69f1df9136163b6c7b10a62 120 Gene3D G3DSA:1.10.10.10 18 118 5.9E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS04895 ba258c858a2a28136f453393a4a92e8d 84 ProDom PD060858 YCEP CYTOPLASMIC STY1199 ESCHERICHIA COLI SIMILAR ECS1438 1 84 4.0E-36 T 29-03-2018 IPR025730 Biofilm regulator BssS AM354_RS04895 ba258c858a2a28136f453393a4a92e8d 84 Pfam PF13991 BssS protein family 11 80 5.8E-38 T 29-03-2018 IPR025730 Biofilm regulator BssS AM354_RS14740 ecb86d0d9902cc88fed408ede0966599 112 Pfam PF04219 Protein of unknown function, DUF 10 98 1.3E-39 T 29-03-2018 IPR007335 Protein of unknown function DUF413 AM354_RS02635 e82e1960e3555613ab9626a346cbe986 264 Gene3D G3DSA:3.40.50.1820 7 262 1.1E-52 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS02635 e82e1960e3555613ab9626a346cbe986 264 Pfam PF12697 Alpha/beta hydrolase family 29 256 1.3E-20 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS02635 e82e1960e3555613ab9626a346cbe986 264 SUPERFAMILY SSF53474 9 264 1.0E-50 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS02705 795809984c2ad3033d4c28f67548cf11 99 ProDom PD336997 PRECURSOR SIGNAL MEMBRANE OUTER YNFD ESCHERICHIA EXPORTED PP0087 COLI PP0090 3 76 4.0E-25 T 29-03-2018 IPR010595 Protein of unknown function DUF1161 AM354_RS02705 795809984c2ad3033d4c28f67548cf11 99 Pfam PF06649 Protein of unknown function (DUF1161) 23 76 3.1E-27 T 29-03-2018 IPR010595 Protein of unknown function DUF1161 AM354_RS25770 01e32bb46908844cbce21ecceb4338e0 361 Pfam PF00487 Fatty acid desaturase 66 338 2.8E-33 T 29-03-2018 IPR005804 Fatty acid desaturase domain GO:0006629 AM354_RS23470 f886e19faf6ab3ca5c16247268dd89e2 199 Gene3D G3DSA:3.40.50.2300 2 111 4.8E-23 T 29-03-2018 AM354_RS23470 f886e19faf6ab3ca5c16247268dd89e2 199 SUPERFAMILY SSF52172 4 158 6.55E-29 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS23470 f886e19faf6ab3ca5c16247268dd89e2 199 Pfam PF00196 Bacterial regulatory proteins, luxR family 135 188 8.5E-17 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS23470 f886e19faf6ab3ca5c16247268dd89e2 199 Pfam PF00072 Response regulator receiver domain 4 113 5.5E-23 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS23470 f886e19faf6ab3ca5c16247268dd89e2 199 SMART SM00421 133 190 1.3E-19 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS23470 f886e19faf6ab3ca5c16247268dd89e2 199 Gene3D G3DSA:1.10.10.10 112 192 4.5E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS23470 f886e19faf6ab3ca5c16247268dd89e2 199 SMART SM00448 2 113 5.9E-23 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS23470 f886e19faf6ab3ca5c16247268dd89e2 199 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 166 3.7E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS23470 f886e19faf6ab3ca5c16247268dd89e2 199 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 178 3.7E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS23470 f886e19faf6ab3ca5c16247268dd89e2 199 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 136 150 3.7E-11 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS12855 83c7ac35f84ba2ee1b62a120d4a0bd17 204 TIGRFAM TIGR00257 IMPACT_YIGZ: uncharacterized protein, YigZ family 2 200 1.1E-72 T 29-03-2018 IPR015796 Impact family, bacterial/archaeal AM354_RS12855 83c7ac35f84ba2ee1b62a120d4a0bd17 204 Gene3D G3DSA:3.30.70.240 137 199 2.3E-18 T 29-03-2018 AM354_RS12855 83c7ac35f84ba2ee1b62a120d4a0bd17 204 Pfam PF09186 Domain of unknown function (DUF1949) 141 196 3.1E-17 T 29-03-2018 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal AM354_RS12855 83c7ac35f84ba2ee1b62a120d4a0bd17 204 SUPERFAMILY SSF54211 3 131 1.14E-42 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM354_RS12855 83c7ac35f84ba2ee1b62a120d4a0bd17 204 SUPERFAMILY SSF54980 138 203 1.04E-16 T 29-03-2018 IPR035647 EF-G domain III/V-like AM354_RS12855 83c7ac35f84ba2ee1b62a120d4a0bd17 204 Gene3D G3DSA:3.30.230.30 8 134 1.2E-39 T 29-03-2018 IPR001498 Impact, N-terminal AM354_RS12855 83c7ac35f84ba2ee1b62a120d4a0bd17 204 ProSitePatterns PS00910 Uncharacterized protein family UPF0029 signature. 80 109 - T 29-03-2018 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site AM354_RS12855 83c7ac35f84ba2ee1b62a120d4a0bd17 204 Pfam PF01205 Uncharacterized protein family UPF0029 18 125 1.4E-28 T 29-03-2018 IPR001498 Impact, N-terminal AM354_RS02770 bac4a81323126b44e993d3835db3e0e1 387 SUPERFAMILY SSF51445 31 314 1.03E-31 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily AM354_RS02770 bac4a81323126b44e993d3835db3e0e1 387 Gene3D G3DSA:3.20.20.80 14 330 4.4E-44 T 29-03-2018 AM354_RS02770 bac4a81323126b44e993d3835db3e0e1 387 Pfam PF02638 Glycosyl hydrolase-like 10 1 335 1.1E-100 T 29-03-2018 IPR003790 Glycosyl hydrolase-like 10 AM354_RS25680 323aedce143070269c598bd437a0bfaf 432 Pfam PF01943 Polysaccharide biosynthesis protein 6 272 1.7E-19 T 29-03-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 AM354_RS25680 323aedce143070269c598bd437a0bfaf 432 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 324 409 7.0E-8 T 29-03-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain AM354_RS06960 adaf80a829bcdb4c6bad46a726bbd97f 276 TIGRFAM TIGR01533 lipo_e_P4: 5'-nucleotidase, lipoprotein e(P4) family 8 273 3.6E-87 T 29-03-2018 IPR006423 5-nucleotidase lipoprotein e(P4) GO:0009279 AM354_RS06960 adaf80a829bcdb4c6bad46a726bbd97f 276 Pfam PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) 33 246 3.3E-56 T 29-03-2018 IPR005519 Acid phosphatase, class B-like AM354_RS06960 adaf80a829bcdb4c6bad46a726bbd97f 276 SUPERFAMILY SSF56784 58 251 1.94E-36 T 29-03-2018 IPR023214 HAD-like domain AM354_RS06960 adaf80a829bcdb4c6bad46a726bbd97f 276 Gene3D G3DSA:3.40.50.1000 46 214 1.3E-21 T 29-03-2018 IPR023214 HAD-like domain AM354_RS06960 adaf80a829bcdb4c6bad46a726bbd97f 276 PIRSF PIRSF019271 4 276 1.4E-99 T 29-03-2018 IPR006423 5-nucleotidase lipoprotein e(P4) GO:0009279 AM354_RS20740 1b48b271bd77145f6e0766665b63643c 198 Pfam PF07022 Bacteriophage CI repressor helix-turn-helix domain 20 84 4.7E-29 T 29-03-2018 IPR010744 Bacteriophage CI repressor GO:0003677|GO:0045892 AM354_RS20740 1b48b271bd77145f6e0766665b63643c 198 Gene3D G3DSA:1.10.260.40 14 84 8.9E-8 T 29-03-2018 AM354_RS20740 1b48b271bd77145f6e0766665b63643c 198 Pfam PF16452 Bacteriophage CI repressor C-terminal domain 93 191 9.6E-31 T 29-03-2018 IPR032499 Bacteriophage CI repressor, C-terminal GO:0051259 AM354_RS01335 daa9d1709a113f0c36e1aef3d9471ae6 330 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 110 297 5.5E-54 T 29-03-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AM354_RS01335 daa9d1709a113f0c36e1aef3d9471ae6 330 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 223 239 - T 29-03-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AM354_RS01335 daa9d1709a113f0c36e1aef3d9471ae6 330 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 147 174 - T 29-03-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 AM354_RS01335 daa9d1709a113f0c36e1aef3d9471ae6 330 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 6 329 7.4E-34 T 29-03-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 AM354_RS01335 daa9d1709a113f0c36e1aef3d9471ae6 330 SUPERFAMILY SSF51735 102 298 2.61E-55 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS01335 daa9d1709a113f0c36e1aef3d9471ae6 330 Gene3D G3DSA:3.40.50.720 2 115 2.8E-27 T 29-03-2018 AM354_RS01335 daa9d1709a113f0c36e1aef3d9471ae6 330 Gene3D G3DSA:3.40.50.720 116 300 5.5E-50 T 29-03-2018 AM354_RS01335 daa9d1709a113f0c36e1aef3d9471ae6 330 SUPERFAMILY SSF52283 2 135 4.16E-44 T 29-03-2018 AM354_RS01335 daa9d1709a113f0c36e1aef3d9471ae6 330 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 194 216 - T 29-03-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AM354_RS19605 941e3a1f2bae3c19543ee180f7485fad 140 PIRSF PIRSF020653 1 137 4.0E-55 T 29-03-2018 IPR009883 Inner membrane protein YgfX AM354_RS19605 941e3a1f2bae3c19543ee180f7485fad 140 Pfam PF07254 Membrane-bound toxin component of toxin-antitoxin system 2 130 1.6E-55 T 29-03-2018 IPR009883 Inner membrane protein YgfX AM354_RS19605 941e3a1f2bae3c19543ee180f7485fad 140 ProDom PD083358 MEMBRANE YGFX INNER SIMILAR ECS3768 Y3281 ESCHERICHIA TRANSMEMBRANE YPO0896A STY3202 19 130 2.0E-27 T 29-03-2018 IPR009883 Inner membrane protein YgfX AM354_RS15670 9aac2d13242ef8b5da9fed83cc5c9d0a 184 SUPERFAMILY SSF55811 2 178 6.91E-37 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 AM354_RS15670 9aac2d13242ef8b5da9fed83cc5c9d0a 184 ProSitePatterns PS00893 Nudix box signature. 80 101 - T 29-03-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AM354_RS15670 9aac2d13242ef8b5da9fed83cc5c9d0a 184 Gene3D G3DSA:3.90.79.10 8 184 1.6E-31 T 29-03-2018 AM354_RS15670 9aac2d13242ef8b5da9fed83cc5c9d0a 184 Pfam PF00293 NUDIX domain 47 140 2.3E-13 T 29-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AM354_RS05810 cb5dc1a9e04df881d2d9532366cc1998 298 ProDom PD022789 MEMBRANE SURFACE PRECURSOR SIGNAL PROTEIN YBJE TRANSMEMBRANE INNER PREDICTED STY0934 152 284 3.0E-51 T 29-03-2018 IPR005642 Lysine exporter LysO AM354_RS05810 cb5dc1a9e04df881d2d9532366cc1998 298 Pfam PF03956 Lysine exporter LysO 113 297 4.6E-58 T 29-03-2018 IPR005642 Lysine exporter LysO AM354_RS12650 a5c68ed8164338dd40cb124de9108277 90 SUPERFAMILY SSF47729 1 90 1.91E-32 T 29-03-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 AM354_RS12650 a5c68ed8164338dd40cb124de9108277 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 2.9E-32 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM354_RS12650 a5c68ed8164338dd40cb124de9108277 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 2.0E-19 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM354_RS12650 a5c68ed8164338dd40cb124de9108277 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 2.0E-19 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM354_RS12650 a5c68ed8164338dd40cb124de9108277 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 2.0E-19 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM354_RS12650 a5c68ed8164338dd40cb124de9108277 90 SMART SM00411 1 90 1.0E-43 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM354_RS12650 a5c68ed8164338dd40cb124de9108277 90 Gene3D G3DSA:4.10.520.10 1 90 3.2E-33 T 29-03-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 AM354_RS12650 a5c68ed8164338dd40cb124de9108277 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 29-03-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 AM354_RS17415 cf6be4edf403db807adcced13f0567c0 193 SUPERFAMILY SSF52218 1 192 3.93E-42 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS17415 cf6be4edf403db807adcced13f0567c0 193 Gene3D G3DSA:3.40.50.360 1 193 1.5E-34 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS17415 cf6be4edf403db807adcced13f0567c0 193 Pfam PF02525 Flavodoxin-like fold 3 188 9.0E-37 T 29-03-2018 IPR003680 Flavodoxin-like fold AM354_RS25005 4d03f54891ef775e9b665cc66d3cadf4 642 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 20 504 8.8E-144 T 29-03-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein AM354_RS25005 4d03f54891ef775e9b665cc66d3cadf4 642 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 7 522 6.4E-182 T 29-03-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset AM354_RS25005 4d03f54891ef775e9b665cc66d3cadf4 642 Gene3D G3DSA:3.55.50.10 98 188 1.2E-29 T 29-03-2018 AM354_RS25005 4d03f54891ef775e9b665cc66d3cadf4 642 Gene3D G3DSA:2.40.50.230 369 451 6.0E-36 T 29-03-2018 IPR006531 Gp5 N-terminal AM354_RS25005 4d03f54891ef775e9b665cc66d3cadf4 642 SUPERFAMILY SSF69255 363 451 2.62E-33 T 29-03-2018 AM354_RS25005 4d03f54891ef775e9b665cc66d3cadf4 642 SUPERFAMILY SSF69279 8 183 4.68E-51 T 29-03-2018 AM354_RS25005 4d03f54891ef775e9b665cc66d3cadf4 642 Pfam PF05954 Phage late control gene D protein (GPD) 25 330 3.5E-89 T 29-03-2018 AM354_RS25005 4d03f54891ef775e9b665cc66d3cadf4 642 SUPERFAMILY SSF69349 441 616 1.26E-34 T 29-03-2018 AM354_RS25005 4d03f54891ef775e9b665cc66d3cadf4 642 SUPERFAMILY SSF69279 187 361 5.27E-47 T 29-03-2018 AM354_RS10265 e39e818931908d6749f453a38cb4ff2a 348 SUPERFAMILY SSF55120 3 339 4.17E-105 T 29-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS10265 e39e818931908d6749f453a38cb4ff2a 348 Gene3D G3DSA:3.30.2340.10 166 301 2.7E-29 T 29-03-2018 AM354_RS10265 e39e818931908d6749f453a38cb4ff2a 348 TIGRFAM TIGR00094 tRNA_TruD_broad: tRNA pseudouridine synthase, TruD family 4 341 1.3E-78 T 29-03-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS10265 e39e818931908d6749f453a38cb4ff2a 348 Hamap MF_01082 tRNA pseudouridine synthase D [truD]. 4 341 28.74 T 29-03-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS10265 e39e818931908d6749f453a38cb4ff2a 348 ProSitePatterns PS01268 Uncharacterized protein family UPF0024 signature. 76 89 - T 29-03-2018 IPR020119 Pseudouridine synthase TruD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Reactome: R-HSA-6782315 AM354_RS10265 e39e818931908d6749f453a38cb4ff2a 348 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 190 336 5.6E-18 T 29-03-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS10265 e39e818931908d6749f453a38cb4ff2a 348 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 11 166 2.2E-40 T 29-03-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS08975 5b2b5d33f50866cbcc31a86990f82a61 161 SUPERFAMILY SSF46894 32 107 9.35E-6 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS08975 5b2b5d33f50866cbcc31a86990f82a61 161 Gene3D G3DSA:1.10.10.10 11 118 1.3E-6 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS03555 690e995fedb3d95c62443a252ca1b7e5 464 Gene3D G3DSA:1.20.1250.20 261 464 2.1E-25 T 29-03-2018 AM354_RS03555 690e995fedb3d95c62443a252ca1b7e5 464 SUPERFAMILY SSF103473 250 447 1.44E-62 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS03555 690e995fedb3d95c62443a252ca1b7e5 464 SUPERFAMILY SSF103473 10 197 1.44E-62 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS03555 690e995fedb3d95c62443a252ca1b7e5 464 PRINTS PR01036 Tetracycline resistance protein TetB signature 110 130 1.2E-9 T 29-03-2018 AM354_RS03555 690e995fedb3d95c62443a252ca1b7e5 464 PRINTS PR01036 Tetracycline resistance protein TetB signature 402 421 1.2E-9 T 29-03-2018 AM354_RS03555 690e995fedb3d95c62443a252ca1b7e5 464 PRINTS PR01036 Tetracycline resistance protein TetB signature 140 164 1.2E-9 T 29-03-2018 AM354_RS03555 690e995fedb3d95c62443a252ca1b7e5 464 PRINTS PR01036 Tetracycline resistance protein TetB signature 304 328 1.2E-9 T 29-03-2018 AM354_RS03555 690e995fedb3d95c62443a252ca1b7e5 464 PRINTS PR01036 Tetracycline resistance protein TetB signature 19 43 1.2E-9 T 29-03-2018 AM354_RS03555 690e995fedb3d95c62443a252ca1b7e5 464 Gene3D G3DSA:1.20.1250.20 12 201 2.6E-27 T 29-03-2018 AM354_RS03555 690e995fedb3d95c62443a252ca1b7e5 464 Pfam PF07690 Major Facilitator Superfamily 20 411 7.6E-49 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS10745 ee8ee77ec95b668aa176bbf99e2791c0 433 Hamap MF_01183 Chaperone SurA [surA]. 9 428 34.494 T 29-03-2018 IPR023034 Peptidyl-prolyl isomerase SurA GO:0003755|GO:0006457|GO:0030288|GO:0042277|GO:0042710|GO:0043165|GO:0050821|GO:0051082|GO:0051085|GO:0060274 AM354_RS10745 ee8ee77ec95b668aa176bbf99e2791c0 433 Pfam PF13616 PPIC-type PPIASE domain 282 383 9.9E-25 T 29-03-2018 AM354_RS10745 ee8ee77ec95b668aa176bbf99e2791c0 433 SUPERFAMILY SSF54534 173 276 8.5E-29 T 29-03-2018 AM354_RS10745 ee8ee77ec95b668aa176bbf99e2791c0 433 Pfam PF00639 PPIC-type PPIASE domain 178 272 4.9E-20 T 29-03-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 AM354_RS10745 ee8ee77ec95b668aa176bbf99e2791c0 433 Gene3D G3DSA:3.10.50.40 163 277 1.9E-24 T 29-03-2018 AM354_RS10745 ee8ee77ec95b668aa176bbf99e2791c0 433 Gene3D G3DSA:3.10.50.40 278 420 6.2E-32 T 29-03-2018 AM354_RS10745 ee8ee77ec95b668aa176bbf99e2791c0 433 SUPERFAMILY SSF54534 283 385 2.49E-31 T 29-03-2018 AM354_RS10745 ee8ee77ec95b668aa176bbf99e2791c0 433 Gene3D G3DSA:1.10.4030.10 21 148 5.2E-27 T 29-03-2018 AM354_RS10745 ee8ee77ec95b668aa176bbf99e2791c0 433 Pfam PF09312 SurA N-terminal domain 25 142 5.2E-45 T 29-03-2018 IPR015391 SurA N-terminal AM354_RS10745 ee8ee77ec95b668aa176bbf99e2791c0 433 SUPERFAMILY SSF109998 25 200 3.27E-45 T 29-03-2018 IPR027304 Trigger factor/SurA domain AM354_RS22985 514fafae56ed88b5746820a04b288246 505 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 2 466 8.5E-163 T 29-03-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 AM354_RS22985 514fafae56ed88b5746820a04b288246 505 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 1 466 45.067 T 29-03-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 AM354_RS22985 514fafae56ed88b5746820a04b288246 505 Gene3D G3DSA:3.60.20.10 2 259 3.4E-56 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AM354_RS22985 514fafae56ed88b5746820a04b288246 505 Pfam PF00156 Phosphoribosyl transferase domain 285 394 3.9E-8 T 29-03-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AM354_RS22985 514fafae56ed88b5746820a04b288246 505 Pfam PF13522 Glutamine amidotransferase domain 64 210 1.6E-16 T 29-03-2018 AM354_RS22985 514fafae56ed88b5746820a04b288246 505 PIRSF PIRSF000485 1 483 3.9E-172 T 29-03-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 AM354_RS22985 514fafae56ed88b5746820a04b288246 505 SUPERFAMILY SSF56235 2 259 1.29E-75 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AM354_RS22985 514fafae56ed88b5746820a04b288246 505 SUPERFAMILY SSF53271 252 485 5.24E-72 T 29-03-2018 IPR029057 Phosphoribosyltransferase-like AM354_RS22985 514fafae56ed88b5746820a04b288246 505 Gene3D G3DSA:3.40.50.2020 277 446 7.6E-38 T 29-03-2018 AM354_RS19580 c785b3f5d1af70568a5ebe555dd3fcae 202 Pfam PF13023 HD domain 23 185 2.7E-49 T 29-03-2018 IPR006674 HD domain AM354_RS19580 c785b3f5d1af70568a5ebe555dd3fcae 202 SUPERFAMILY SSF109604 13 192 5.34E-44 T 29-03-2018 AM354_RS19580 c785b3f5d1af70568a5ebe555dd3fcae 202 Gene3D G3DSA:1.10.3210.10 9 202 9.9E-46 T 29-03-2018 AM354_RS08825 bbff037744d10bf34ddc6b63b330cd67 126 PIRSF PIRSF016789 2 123 1.2E-48 T 29-03-2018 IPR007401 Protein of unknown function DUF454 AM354_RS08825 bbff037744d10bf34ddc6b63b330cd67 126 Pfam PF04304 Protein of unknown function (DUF454) 3 116 3.9E-41 T 29-03-2018 IPR007401 Protein of unknown function DUF454 AM354_RS02695 f9ae826ca77253d4fabfc99e982540f2 108 Pfam PF02694 Uncharacterised BCR, YnfA/UPF0060 family 1 107 1.7E-42 T 29-03-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 AM354_RS02695 f9ae826ca77253d4fabfc99e982540f2 108 Hamap MF_00010 UPF0060 membrane protein YnfA [ynfA]. 2 106 22.345 T 29-03-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 AM354_RS02695 f9ae826ca77253d4fabfc99e982540f2 108 SUPERFAMILY SSF103481 8 105 8.63E-5 T 29-03-2018 AM354_RS07545 8a063023a7f97956aa06750ecf4fcc7d 309 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 69 80 2.6E-13 T 29-03-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AM354_RS07545 8a063023a7f97956aa06750ecf4fcc7d 309 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 146 159 2.6E-13 T 29-03-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AM354_RS07545 8a063023a7f97956aa06750ecf4fcc7d 309 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 119 136 2.6E-13 T 29-03-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AM354_RS07545 8a063023a7f97956aa06750ecf4fcc7d 309 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 36 264 3.2E-80 T 29-03-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 AM354_RS07545 8a063023a7f97956aa06750ecf4fcc7d 309 Gene3D G3DSA:3.40.710.10 14 309 2.1E-43 T 29-03-2018 AM354_RS07545 8a063023a7f97956aa06750ecf4fcc7d 309 SUPERFAMILY SSF56601 5 280 5.52E-59 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM354_RS00105 de2382b8e8282aca504c617cc408b267 290 SUPERFAMILY SSF46689 1 80 7.53E-21 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS00105 de2382b8e8282aca504c617cc408b267 290 Pfam PF01380 SIS domain 124 252 9.1E-25 T 29-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AM354_RS00105 de2382b8e8282aca504c617cc408b267 290 SUPERFAMILY SSF53697 94 277 1.28E-42 T 29-03-2018 AM354_RS00105 de2382b8e8282aca504c617cc408b267 290 Pfam PF01418 Helix-turn-helix domain, rpiR family 1 76 2.0E-29 T 29-03-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 AM354_RS00105 de2382b8e8282aca504c617cc408b267 290 Gene3D G3DSA:3.40.50.10490 94 280 2.2E-37 T 29-03-2018 AM354_RS00105 de2382b8e8282aca504c617cc408b267 290 Gene3D G3DSA:1.10.10.10 1 93 2.9E-27 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS13600 217d965357e7100573cecc5da9d19a03 307 Pfam PF01965 DJ-1/PfpI family 5 174 5.2E-13 T 29-03-2018 IPR002818 DJ-1/PfpI AM354_RS13600 217d965357e7100573cecc5da9d19a03 307 SUPERFAMILY SSF52317 5 195 1.76E-32 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS13600 217d965357e7100573cecc5da9d19a03 307 Gene3D G3DSA:3.40.50.880 1 212 4.5E-45 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS13600 217d965357e7100573cecc5da9d19a03 307 Gene3D G3DSA:1.10.10.60 213 264 1.9E-12 T 29-03-2018 AM354_RS13600 217d965357e7100573cecc5da9d19a03 307 SMART SM00342 230 304 1.3E-7 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS13600 217d965357e7100573cecc5da9d19a03 307 SUPERFAMILY SSF46689 213 263 4.45E-9 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS13600 217d965357e7100573cecc5da9d19a03 307 Gene3D G3DSA:1.10.10.60 265 303 0.032 T 29-03-2018 AM354_RS13600 217d965357e7100573cecc5da9d19a03 307 Pfam PF12833 Helix-turn-helix domain 236 300 3.4E-12 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS18100 e431dbdf211479f48e42272b8beca728 298 TIGRFAM TIGR00697 TIGR00697: conserved hypothetical integral membrane protein 89 279 9.2E-30 T 29-03-2018 IPR003744 Queuosine precursor transporter AM354_RS18100 e431dbdf211479f48e42272b8beca728 298 Pfam PF02592 Putative vitamin uptake transporter 116 272 6.7E-38 T 29-03-2018 IPR003744 Queuosine precursor transporter AM354_RS23265 23aac61f8647638971484c2d6f3ffb79 402 Pfam PF03222 Tryptophan/tyrosine permease family 3 389 4.1E-134 T 29-03-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 AM354_RS23265 23aac61f8647638971484c2d6f3ffb79 402 ProSitePatterns PS00594 Aromatic amino acids permeases signature. 17 33 - T 29-03-2018 IPR013061 Tryptophan/tryrosine permease, conserved site AM354_RS23265 23aac61f8647638971484c2d6f3ffb79 402 TIGRFAM TIGR00837 araaP: aromatic amino acid transport protein 7 383 5.5E-137 T 29-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM354_RS23265 23aac61f8647638971484c2d6f3ffb79 402 PRINTS PR00166 Aromatic amino acid permease signature 148 168 1.2E-87 T 29-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM354_RS23265 23aac61f8647638971484c2d6f3ffb79 402 PRINTS PR00166 Aromatic amino acid permease signature 316 334 1.2E-87 T 29-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM354_RS23265 23aac61f8647638971484c2d6f3ffb79 402 PRINTS PR00166 Aromatic amino acid permease signature 82 102 1.2E-87 T 29-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM354_RS23265 23aac61f8647638971484c2d6f3ffb79 402 PRINTS PR00166 Aromatic amino acid permease signature 10 33 1.2E-87 T 29-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM354_RS23265 23aac61f8647638971484c2d6f3ffb79 402 PRINTS PR00166 Aromatic amino acid permease signature 337 356 1.2E-87 T 29-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM354_RS23265 23aac61f8647638971484c2d6f3ffb79 402 PRINTS PR00166 Aromatic amino acid permease signature 182 204 1.2E-87 T 29-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM354_RS23265 23aac61f8647638971484c2d6f3ffb79 402 PRINTS PR00166 Aromatic amino acid permease signature 282 301 1.2E-87 T 29-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM354_RS23265 23aac61f8647638971484c2d6f3ffb79 402 PRINTS PR00166 Aromatic amino acid permease signature 37 56 1.2E-87 T 29-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM354_RS23265 23aac61f8647638971484c2d6f3ffb79 402 PRINTS PR00166 Aromatic amino acid permease signature 221 240 1.2E-87 T 29-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM354_RS23920 7fa450d81254a2c1395609fa2154c566 304 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 153 4.8E-4 T 29-03-2018 AM354_RS23920 7fa450d81254a2c1395609fa2154c566 304 Gene3D G3DSA:3.40.50.720 2 303 2.7E-52 T 29-03-2018 AM354_RS23920 7fa450d81254a2c1395609fa2154c566 304 SUPERFAMILY SSF51735 2 241 2.76E-56 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS23920 7fa450d81254a2c1395609fa2154c566 304 SUPERFAMILY SSF51735 268 301 2.76E-56 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS23920 7fa450d81254a2c1395609fa2154c566 304 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 207 1.0E-25 T 29-03-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AM354_RS06375 51c8e72c5d889b8558120b8ed91c0266 193 SUPERFAMILY SSF51283 1 193 1.3E-60 T 29-03-2018 IPR029054 dUTPase-like AM354_RS06375 51c8e72c5d889b8558120b8ed91c0266 193 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 2 190 3.2E-69 T 29-03-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187 AM354_RS06375 51c8e72c5d889b8558120b8ed91c0266 193 Hamap MF_00146 dCTP deaminase [dcd]. 1 190 34.449 T 29-03-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187 AM354_RS06375 51c8e72c5d889b8558120b8ed91c0266 193 Pfam PF00692 dUTPase 79 185 1.5E-8 T 29-03-2018 IPR029054 dUTPase-like AM354_RS06375 51c8e72c5d889b8558120b8ed91c0266 193 Gene3D G3DSA:2.70.40.10 2 168 8.6E-45 T 29-03-2018 AM354_RS06405 9760d5462f32e21e0969f6d150377fc3 404 SUPERFAMILY SSF103473 10 392 1.96E-46 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS06405 9760d5462f32e21e0969f6d150377fc3 404 Gene3D G3DSA:1.20.1250.20 5 194 4.0E-23 T 29-03-2018 AM354_RS06405 9760d5462f32e21e0969f6d150377fc3 404 Pfam PF07690 Major Facilitator Superfamily 12 347 1.6E-30 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS06405 9760d5462f32e21e0969f6d150377fc3 404 Gene3D G3DSA:1.20.1250.20 198 402 2.4E-17 T 29-03-2018 AM354_RS01160 7d6931c88865704082ce323dbc1e0dcb 394 Gene3D G3DSA:1.20.1290.10 244 394 3.1E-19 T 29-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AM354_RS01160 7d6931c88865704082ce323dbc1e0dcb 394 SUPERFAMILY SSF69118 215 385 4.32E-25 T 29-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AM354_RS01160 7d6931c88865704082ce323dbc1e0dcb 394 Gene3D G3DSA:1.20.1290.10 28 190 1.1E-5 T 29-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AM354_RS01160 7d6931c88865704082ce323dbc1e0dcb 394 SUPERFAMILY SSF69118 52 184 1.96E-11 T 29-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AM354_RS05635 136484c42c8754e4a849a5c50d9563f0 73 PRINTS PR00050 Cold shock protein signature 46 64 1.7E-12 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM354_RS05635 136484c42c8754e4a849a5c50d9563f0 73 PRINTS PR00050 Cold shock protein signature 31 40 1.7E-12 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM354_RS05635 136484c42c8754e4a849a5c50d9563f0 73 PRINTS PR00050 Cold shock protein signature 10 25 1.7E-12 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM354_RS05635 136484c42c8754e4a849a5c50d9563f0 73 SUPERFAMILY SSF50249 5 71 8.78E-19 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS05635 136484c42c8754e4a849a5c50d9563f0 73 Gene3D G3DSA:2.40.50.140 3 73 1.0E-19 T 29-03-2018 AM354_RS05635 136484c42c8754e4a849a5c50d9563f0 73 Pfam PF00313 'Cold-shock' DNA-binding domain 10 71 3.3E-19 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM354_RS05635 136484c42c8754e4a849a5c50d9563f0 73 SMART SM00357 9 73 9.8E-12 T 29-03-2018 IPR011129 Cold shock domain GO:0003676 AM354_RS05635 136484c42c8754e4a849a5c50d9563f0 73 PIRSF PIRSF002599 3 73 5.5E-18 T 29-03-2018 IPR012156 Cold shock, CspA GO:0003676 AM354_RS01545 3814b40e85d0358d543603ebc7a50bb9 536 Pfam PF01384 Phosphate transporter family 81 526 6.1E-86 T 29-03-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 AM354_RS07580 d44bac9e555511d5cc63488651c5a8e9 488 Pfam PF00324 Amino acid permease 35 468 3.3E-126 T 29-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 AM354_RS07580 d44bac9e555511d5cc63488651c5a8e9 488 Gene3D G3DSA:1.10.287.70 58 318 0.1 T 29-03-2018 AM354_RS07580 d44bac9e555511d5cc63488651c5a8e9 488 ProSitePatterns PS00218 Amino acid permeases signature. 59 89 - T 29-03-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 AM354_RS07580 d44bac9e555511d5cc63488651c5a8e9 488 PIRSF PIRSF006060 22 487 8.7E-66 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM354_RS13075 89a52098e006016f368d7c10acfcdec7 206 SUPERFAMILY SSF53335 20 197 2.79E-53 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS13075 89a52098e006016f368d7c10acfcdec7 206 PIRSF PIRSF004553 20 199 3.3E-57 T 29-03-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 AM354_RS13075 89a52098e006016f368d7c10acfcdec7 206 Gene3D G3DSA:3.40.50.150 8 206 1.8E-36 T 29-03-2018 AM354_RS13075 89a52098e006016f368d7c10acfcdec7 206 Pfam PF03602 Conserved hypothetical protein 95 21 195 6.5E-60 T 29-03-2018 AM354_RS13075 89a52098e006016f368d7c10acfcdec7 206 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 132 138 - T 29-03-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AM354_RS13075 89a52098e006016f368d7c10acfcdec7 206 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 14 197 1.5E-63 T 29-03-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 AM354_RS12410 2d90d116d8cf4c74e3a9596a06f20a33 130 SUPERFAMILY SSF81343 2 129 2.13E-55 T 29-03-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM354_RS12410 2d90d116d8cf4c74e3a9596a06f20a33 130 PIRSF PIRSF000180 2 130 2.8E-56 T 29-03-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 AM354_RS12410 2d90d116d8cf4c74e3a9596a06f20a33 130 ProDom PD015900 FUMARATE MEMBRANE REDUCTASE C SUBUNIT TRANSMEMBRANE INNER HYDROPHOBIC REDUCTASE POLYPEPTIDE 8 112 1.0E-36 T 29-03-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 AM354_RS12410 2d90d116d8cf4c74e3a9596a06f20a33 130 Hamap MF_00708 Fumarate reductase subunit C [frdC]. 2 128 28.162 T 29-03-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 AM354_RS12410 2d90d116d8cf4c74e3a9596a06f20a33 130 Pfam PF02300 Fumarate reductase subunit C 3 128 3.0E-54 T 29-03-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 AM354_RS12410 2d90d116d8cf4c74e3a9596a06f20a33 130 Gene3D G3DSA:1.20.1300.10 3 128 1.6E-54 T 29-03-2018 AM354_RS05360 e97bb4cfaee1ec07516563f29b14ac89 265 SUPERFAMILY SSF46894 18 102 3.4E-11 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS05360 e97bb4cfaee1ec07516563f29b14ac89 265 Pfam PF00486 Transcriptional regulatory protein, C terminal 28 102 2.6E-9 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS05360 e97bb4cfaee1ec07516563f29b14ac89 265 Gene3D G3DSA:1.10.10.10 7 106 4.4E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS05360 e97bb4cfaee1ec07516563f29b14ac89 265 SMART SM00862 25 102 2.8E-8 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS14395 1e276bc79eeae083f46528fde7fc7ce0 388 SUPERFAMILY SSF53756 5 303 1.53E-44 T 29-03-2018 AM354_RS14395 1e276bc79eeae083f46528fde7fc7ce0 388 SUPERFAMILY SSF53756 338 375 1.53E-44 T 29-03-2018 AM354_RS14395 1e276bc79eeae083f46528fde7fc7ce0 388 Pfam PF00534 Glycosyl transferases group 1 180 302 1.0E-21 T 29-03-2018 IPR001296 Glycosyl transferase, family 1 AM354_RS14395 1e276bc79eeae083f46528fde7fc7ce0 388 Gene3D G3DSA:3.40.50.2000 34 174 0.18 T 29-03-2018 AM354_RS14395 1e276bc79eeae083f46528fde7fc7ce0 388 Pfam PF13439 Glycosyltransferase Family 4 13 159 2.9E-8 T 29-03-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193 AM354_RS14395 1e276bc79eeae083f46528fde7fc7ce0 388 Gene3D G3DSA:3.40.50.2000 175 371 2.5E-30 T 29-03-2018 AM354_RS09685 12448ce133ed6dc00ed0b2513e1d557f 283 Gene3D G3DSA:3.20.20.100 1 273 9.4E-93 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS09685 12448ce133ed6dc00ed0b2513e1d557f 283 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 120 137 - T 29-03-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AM354_RS09685 12448ce133ed6dc00ed0b2513e1d557f 283 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 39 56 - T 29-03-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AM354_RS09685 12448ce133ed6dc00ed0b2513e1d557f 283 SUPERFAMILY SSF51430 2 262 4.45E-89 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS09685 12448ce133ed6dc00ed0b2513e1d557f 283 PRINTS PR00069 Aldo-keto reductase signature 154 183 3.1E-44 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM354_RS09685 12448ce133ed6dc00ed0b2513e1d557f 283 PRINTS PR00069 Aldo-keto reductase signature 35 59 3.1E-44 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM354_RS09685 12448ce133ed6dc00ed0b2513e1d557f 283 PRINTS PR00069 Aldo-keto reductase signature 193 217 3.1E-44 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM354_RS09685 12448ce133ed6dc00ed0b2513e1d557f 283 PRINTS PR00069 Aldo-keto reductase signature 120 137 3.1E-44 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM354_RS09685 12448ce133ed6dc00ed0b2513e1d557f 283 PRINTS PR00069 Aldo-keto reductase signature 91 109 3.1E-44 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM354_RS09685 12448ce133ed6dc00ed0b2513e1d557f 283 Pfam PF00248 Aldo/keto reductase family 15 257 7.9E-46 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS09685 12448ce133ed6dc00ed0b2513e1d557f 283 PIRSF PIRSF000097 1 115 1.4E-38 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM354_RS09685 12448ce133ed6dc00ed0b2513e1d557f 283 PIRSF PIRSF000097 110 270 4.5E-41 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM354_RS22290 04bda743c4f6b08d860a799a83eacfd3 279 SUPERFAMILY SSF161098 19 266 2.22E-57 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS22290 04bda743c4f6b08d860a799a83eacfd3 279 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 77 275 9.4E-33 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS22290 04bda743c4f6b08d860a799a83eacfd3 279 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 10 272 4.3E-113 T 29-03-2018 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 AM354_RS22290 04bda743c4f6b08d860a799a83eacfd3 279 Gene3D G3DSA:1.10.3720.10 10 276 4.6E-47 T 29-03-2018 AM354_RS22290 04bda743c4f6b08d860a799a83eacfd3 279 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 3 270 1.9E-112 T 29-03-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 AM354_RS25845 3b1a3c3395374190f84248c542134ba2 74 Pfam PF10798 Biofilm development protein YmgB/AriR 21 68 1.3E-7 T 29-03-2018 IPR024753 Regulatory protein AriR GO:0042710|GO:0071229 AM354_RS00600 e439a13f97b4ff9136c9e6371b1c594c 181 Pfam PF10991 Protein of unknown function (DUF2815) 3 172 4.7E-44 T 29-03-2018 IPR022595 Protein of unknown function DUF2815 AM354_RS00600 e439a13f97b4ff9136c9e6371b1c594c 181 SUPERFAMILY SSF50249 6 173 3.6E-14 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS00600 e439a13f97b4ff9136c9e6371b1c594c 181 Gene3D G3DSA:2.40.50.140 1 180 3.6E-44 T 29-03-2018 AM354_RS11825 dded6e7d7754f833def3990ebe7ba24b 193 PIRSF PIRSF020680 1 193 2.9E-56 T 29-03-2018 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 AM354_RS11825 dded6e7d7754f833def3990ebe7ba24b 193 Pfam PF05845 Bacterial phosphonate metabolism protein (PhnH) 5 191 3.3E-59 T 29-03-2018 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 AM354_RS11825 dded6e7d7754f833def3990ebe7ba24b 193 SUPERFAMILY SSF159709 13 192 1.57E-53 T 29-03-2018 AM354_RS11825 dded6e7d7754f833def3990ebe7ba24b 193 TIGRFAM TIGR03292 PhnH_redo: phosphonate C-P lyase system protein PhnH 6 189 3.8E-51 T 29-03-2018 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 AM354_RS12925 5753615c1e2e3c4ff3662a29f38ca66f 202 Gene3D G3DSA:3.30.1050.10 7 121 2.8E-5 T 29-03-2018 IPR003033 SCP2 sterol-binding domain AM354_RS12925 5753615c1e2e3c4ff3662a29f38ca66f 202 Pfam PF02036 SCP-2 sterol transfer family 15 113 2.0E-19 T 29-03-2018 IPR003033 SCP2 sterol-binding domain AM354_RS12925 5753615c1e2e3c4ff3662a29f38ca66f 202 SUPERFAMILY SSF55718 11 117 1.29E-7 T 29-03-2018 IPR003033 SCP2 sterol-binding domain AM354_RS19780 c173084549a8a2537e9e8dec899108ef 652 SUPERFAMILY SSF52540 8 232 8.47E-67 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS19780 c173084549a8a2537e9e8dec899108ef 652 Pfam PF02687 FtsX-like permease family 558 645 3.5E-9 T 29-03-2018 IPR003838 ABC transporter permease protein domain GO:0016020 AM354_RS19780 c173084549a8a2537e9e8dec899108ef 652 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS19780 c173084549a8a2537e9e8dec899108ef 652 SMART SM00382 37 224 2.3E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS19780 c173084549a8a2537e9e8dec899108ef 652 Pfam PF12704 MacB-like periplasmic core domain 278 494 5.7E-32 T 29-03-2018 IPR025857 MacB-like periplasmic core domain AM354_RS19780 c173084549a8a2537e9e8dec899108ef 652 Pfam PF00005 ABC transporter 28 176 3.1E-32 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS19780 c173084549a8a2537e9e8dec899108ef 652 Gene3D G3DSA:3.40.50.300 5 247 3.0E-65 T 29-03-2018 AM354_RS22690 9c6e702d3a4d2d5d160e023e071030e2 266 Pfam PF14526 Integron-associated effector binding protein 199 265 1.0E-7 T 29-03-2018 IPR029441 Integron-associated effector binding protein AM354_RS22690 9c6e702d3a4d2d5d160e023e071030e2 266 SMART SM00342 22 105 1.0E-24 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS22690 9c6e702d3a4d2d5d160e023e071030e2 266 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 59 101 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM354_RS22690 9c6e702d3a4d2d5d160e023e071030e2 266 Gene3D G3DSA:3.20.80.10 97 266 1.7E-11 T 29-03-2018 IPR011256 Regulatory factor, effector binding domain AM354_RS22690 9c6e702d3a4d2d5d160e023e071030e2 266 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 89 105 2.5E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM354_RS22690 9c6e702d3a4d2d5d160e023e071030e2 266 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 74 89 2.5E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM354_RS22690 9c6e702d3a4d2d5d160e023e071030e2 266 Gene3D G3DSA:1.10.10.60 2 56 1.6E-11 T 29-03-2018 AM354_RS22690 9c6e702d3a4d2d5d160e023e071030e2 266 SUPERFAMILY SSF46689 6 56 3.81E-9 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS22690 9c6e702d3a4d2d5d160e023e071030e2 266 SUPERFAMILY SSF55136 199 265 1.13E-9 T 29-03-2018 AM354_RS22690 9c6e702d3a4d2d5d160e023e071030e2 266 Gene3D G3DSA:1.10.10.60 57 96 1.9E-7 T 29-03-2018 AM354_RS22690 9c6e702d3a4d2d5d160e023e071030e2 266 Pfam PF12833 Helix-turn-helix domain 32 106 2.7E-19 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS22690 9c6e702d3a4d2d5d160e023e071030e2 266 SUPERFAMILY SSF46689 59 110 1.75E-10 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS23930 774461d636ed61640a73d70df3164a10 374 Gene3D G3DSA:3.40.630.30 2 124 1.7E-4 T 29-03-2018 AM354_RS23930 774461d636ed61640a73d70df3164a10 374 Gene3D G3DSA:3.40.630.30 178 371 1.1E-11 T 29-03-2018 AM354_RS23930 774461d636ed61640a73d70df3164a10 374 SUPERFAMILY SSF55729 139 371 3.13E-22 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS23930 774461d636ed61640a73d70df3164a10 374 SUPERFAMILY SSF55729 6 111 3.13E-22 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS16665 762803d6183d87c7e17e23fe9b62b9f8 155 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 1 155 7.1E-68 T 29-03-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 AM354_RS16665 762803d6183d87c7e17e23fe9b62b9f8 155 Gene3D G3DSA:2.40.50.100 4 155 2.2E-21 T 29-03-2018 AM354_RS16665 762803d6183d87c7e17e23fe9b62b9f8 155 Pfam PF00364 Biotin-requiring enzyme 81 154 1.1E-26 T 29-03-2018 IPR000089 Biotin/lipoyl attachment AM354_RS16665 762803d6183d87c7e17e23fe9b62b9f8 155 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 116 129 1.3E-18 T 29-03-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 AM354_RS16665 762803d6183d87c7e17e23fe9b62b9f8 155 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 101 115 1.3E-18 T 29-03-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 AM354_RS16665 762803d6183d87c7e17e23fe9b62b9f8 155 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 84 97 1.3E-18 T 29-03-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 AM354_RS16665 762803d6183d87c7e17e23fe9b62b9f8 155 SUPERFAMILY SSF51230 80 155 3.93E-27 T 29-03-2018 IPR011053 Single hybrid motif AM354_RS16665 762803d6183d87c7e17e23fe9b62b9f8 155 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 111 128 - T 29-03-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AM354_RS21830 5985661cce60979b54c2ee2892ce5cac 417 Gene3D G3DSA:2.40.50.100 92 164 2.2E-21 T 29-03-2018 AM354_RS21830 5985661cce60979b54c2ee2892ce5cac 417 Hamap MF_01422 Multidrug resistance protein MdtA [mdtA]. 4 415 53.273 T 29-03-2018 IPR022824 Multidrug resistance protein MdtA AM354_RS21830 5985661cce60979b54c2ee2892ce5cac 417 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 68 395 1.2E-79 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AM354_RS21830 5985661cce60979b54c2ee2892ce5cac 417 SUPERFAMILY SSF111369 85 319 3.66E-57 T 29-03-2018 AM354_RS21830 5985661cce60979b54c2ee2892ce5cac 417 Pfam PF13437 HlyD family secretion protein 204 306 2.3E-6 T 29-03-2018 AM354_RS21830 5985661cce60979b54c2ee2892ce5cac 417 Pfam PF13533 Biotin-lipoyl like 93 141 5.6E-16 T 29-03-2018 AM354_RS21830 5985661cce60979b54c2ee2892ce5cac 417 Gene3D G3DSA:2.40.50.100 197 404 3.7E-5 T 29-03-2018 AM354_RS06060 7a53d39720074467b7bb8c20f6444950 212 Gene3D G3DSA:2.60.40.1090 52 212 1.4E-24 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS06060 7a53d39720074467b7bb8c20f6444950 212 SUPERFAMILY SSF49401 53 212 1.34E-28 T 29-03-2018 IPR008966 Adhesion domain AM354_RS00185 f3e971035282b6663e2970b352431973 218 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 18 209 9.0E-54 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AM354_RS00185 f3e971035282b6663e2970b352431973 218 SUPERFAMILY SSF56529 12 211 5.63E-69 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AM354_RS00185 f3e971035282b6663e2970b352431973 218 Gene3D G3DSA:3.90.850.10 10 216 1.8E-71 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AM354_RS24040 32bd19316bed9f41a3b389f13211e60c 350 Pfam PF03060 Nitronate monooxygenase 12 345 8.5E-83 T 29-03-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 AM354_RS24040 32bd19316bed9f41a3b389f13211e60c 350 Gene3D G3DSA:3.20.20.70 4 350 4.4E-50 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS24040 32bd19316bed9f41a3b389f13211e60c 350 SUPERFAMILY SSF51412 8 75 2.9E-59 T 29-03-2018 AM354_RS24040 32bd19316bed9f41a3b389f13211e60c 350 SUPERFAMILY SSF51412 102 348 2.9E-59 T 29-03-2018 AM354_RS20035 49ce50f1b3a3b37494a361455e55aaa2 616 Gene3D G3DSA:3.40.50.300 115 360 1.7E-59 T 29-03-2018 AM354_RS20035 49ce50f1b3a3b37494a361455e55aaa2 616 SUPERFAMILY SSF52540 286 383 8.59E-62 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS20035 49ce50f1b3a3b37494a361455e55aaa2 616 SUPERFAMILY SSF52540 439 612 8.59E-62 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS20035 49ce50f1b3a3b37494a361455e55aaa2 616 Gene3D G3DSA:3.40.50.300 370 601 4.3E-34 T 29-03-2018 AM354_RS20035 49ce50f1b3a3b37494a361455e55aaa2 616 Pfam PF13604 AAA domain 161 324 4.6E-32 T 29-03-2018 AM354_RS20035 49ce50f1b3a3b37494a361455e55aaa2 616 TIGRFAM TIGR01447 recD: exodeoxyribonuclease V, alpha subunit 5 612 2.4E-190 T 29-03-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 AM354_RS20035 49ce50f1b3a3b37494a361455e55aaa2 616 Pfam PF13538 UvrD-like helicase C-terminal domain 541 587 4.6E-16 T 29-03-2018 IPR027785 UvrD-like helicase C-terminal domain AM354_RS20035 49ce50f1b3a3b37494a361455e55aaa2 616 SUPERFAMILY SSF52540 5 365 7.02E-49 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS20035 49ce50f1b3a3b37494a361455e55aaa2 616 Hamap MF_01487 RecBCD enzyme subunit RecD [recD]. 14 610 53.529 T 29-03-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 AM354_RS10345 4965399b924036f23193c64ee11a1c51 119 TIGRFAM TIGR03367 queuosine_QueD: queuosine biosynthesis protein QueD 5 96 2.5E-33 T 29-03-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein Reactome: R-HSA-1474151 AM354_RS10345 4965399b924036f23193c64ee11a1c51 119 TIGRFAM TIGR00039 6PTHBS: 6-pyruvoyl tetrahydropterin synthase/QueD family protein 3 118 1.5E-37 T 29-03-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein Reactome: R-HSA-1474151 AM354_RS10345 4965399b924036f23193c64ee11a1c51 119 SUPERFAMILY SSF55620 3 118 2.11E-41 T 29-03-2018 AM354_RS10345 4965399b924036f23193c64ee11a1c51 119 Gene3D G3DSA:3.30.479.10 1 119 1.4E-40 T 29-03-2018 AM354_RS10345 4965399b924036f23193c64ee11a1c51 119 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 6 118 2.8E-35 T 29-03-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein Reactome: R-HSA-1474151 AM354_RS10345 4965399b924036f23193c64ee11a1c51 119 PIRSF PIRSF006113 1 119 3.7E-55 T 29-03-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein Reactome: R-HSA-1474151 AM354_RS11175 f71af0a597582a2d5fdd93593af4d065 409 TIGRFAM TIGR01272 gluP: glucose/galactose transporter WARNING 104 402 6.1E-61 T 29-03-2018 IPR005964 Bacterial glucose/galactose transporter GO:0005354|GO:0005355|GO:0009276|GO:0015757|GO:0015758|GO:0016021 AM354_RS11175 f71af0a597582a2d5fdd93593af4d065 409 TIGRFAM TIGR00885 fucP: L-fucose:H+ symporter permease 24 405 4.3E-97 T 29-03-2018 IPR005275 L-fucose permease FucP GO:0015150|GO:0015756 AM354_RS11175 f71af0a597582a2d5fdd93593af4d065 409 Pfam PF07690 Major Facilitator Superfamily 30 371 7.3E-25 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS11175 f71af0a597582a2d5fdd93593af4d065 409 Gene3D G3DSA:1.20.1250.20 19 222 1.8E-27 T 29-03-2018 AM354_RS11175 f71af0a597582a2d5fdd93593af4d065 409 Gene3D G3DSA:1.20.1250.20 226 408 9.5E-20 T 29-03-2018 AM354_RS11175 f71af0a597582a2d5fdd93593af4d065 409 SUPERFAMILY SSF103473 17 407 2.35E-46 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS25820 811d31d6da4c5ebf5ae156918c9cf3a7 490 Hamap MF_01174 N-succinylglutamate 5-semialdehyde dehydrogenase [astD]. 4 489 58.096 T 29-03-2018 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71 AM354_RS25820 811d31d6da4c5ebf5ae156918c9cf3a7 490 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 273 284 - T 29-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AM354_RS25820 811d31d6da4c5ebf5ae156918c9cf3a7 490 Gene3D G3DSA:3.40.605.10 1 261 3.0E-74 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM354_RS25820 811d31d6da4c5ebf5ae156918c9cf3a7 490 TIGRFAM TIGR03240 arg_catab_astD: succinylglutamate-semialdehyde dehydrogenase 7 489 3.0E-253 T 29-03-2018 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71 AM354_RS25820 811d31d6da4c5ebf5ae156918c9cf3a7 490 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 245 252 - T 29-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AM354_RS25820 811d31d6da4c5ebf5ae156918c9cf3a7 490 Pfam PF00171 Aldehyde dehydrogenase family 12 461 6.2E-116 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM354_RS25820 811d31d6da4c5ebf5ae156918c9cf3a7 490 SUPERFAMILY SSF53720 5 458 1.7E-122 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM354_RS25820 811d31d6da4c5ebf5ae156918c9cf3a7 490 Gene3D G3DSA:3.40.309.10 262 456 7.7E-41 T 29-03-2018 AM354_RS15305 9af33aa9e55ae70e12e834873503495f 833 Pfam PF00577 Outer membrane usher protein 197 748 1.4E-173 T 29-03-2018 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 AM354_RS15305 9af33aa9e55ae70e12e834873503495f 833 Pfam PF13954 PapC N-terminal domain 34 179 2.9E-38 T 29-03-2018 IPR025885 PapC, N-terminal domain GO:0005515 AM354_RS15305 9af33aa9e55ae70e12e834873503495f 833 SUPERFAMILY SSF141729 33 153 3.14E-30 T 29-03-2018 AM354_RS15305 9af33aa9e55ae70e12e834873503495f 833 Pfam PF13953 PapC C-terminal domain 757 815 1.0E-14 T 29-03-2018 IPR025949 PapC-like, C-terminal domain AM354_RS15305 9af33aa9e55ae70e12e834873503495f 833 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 310 320 - T 29-03-2018 IPR018030 Fimbrial membrane usher, conserved site AM354_RS07650 9e390a3bc831ca6e8d4d676bfa739017 460 Pfam PF00271 Helicase conserved C-terminal domain 235 339 2.3E-26 T 29-03-2018 IPR001650 Helicase, C-terminal AM354_RS07650 9e390a3bc831ca6e8d4d676bfa739017 460 Gene3D G3DSA:3.40.50.300 5 223 2.5E-60 T 29-03-2018 AM354_RS07650 9e390a3bc831ca6e8d4d676bfa739017 460 SMART SM00490 259 340 7.4E-32 T 29-03-2018 IPR001650 Helicase, C-terminal AM354_RS07650 9e390a3bc831ca6e8d4d676bfa739017 460 SMART SM00487 20 223 1.1E-60 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AM354_RS07650 9e390a3bc831ca6e8d4d676bfa739017 460 Pfam PF00270 DEAD/DEAH box helicase 25 196 8.0E-50 T 29-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AM354_RS07650 9e390a3bc831ca6e8d4d676bfa739017 460 Gene3D G3DSA:3.40.50.300 224 459 2.2E-46 T 29-03-2018 AM354_RS07650 9e390a3bc831ca6e8d4d676bfa739017 460 SUPERFAMILY SSF52540 75 361 2.0E-73 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS07650 9e390a3bc831ca6e8d4d676bfa739017 460 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 154 162 - T 29-03-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site AM354_RS07650 9e390a3bc831ca6e8d4d676bfa739017 460 Hamap MF_00968 ATP-dependent RNA helicase RhlE [rhlE]. 1 456 51.5 T 29-03-2018 IPR028622 ATP-dependent RNA helicase RhlE GO:0004004|GO:0042255 AM354_RS16685 fd543d209b3856ac2bf3086db035df57 325 Gene3D G3DSA:3.40.50.720 161 270 9.6E-15 T 29-03-2018 AM354_RS16685 fd543d209b3856ac2bf3086db035df57 325 SUPERFAMILY SSF51735 116 287 3.7E-40 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS16685 fd543d209b3856ac2bf3086db035df57 325 TIGRFAM TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family 2 324 7.1E-138 T 29-03-2018 IPR014188 Acrylyl-CoA reductase AcuI AM354_RS16685 fd543d209b3856ac2bf3086db035df57 325 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 86 2.1E-5 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AM354_RS16685 fd543d209b3856ac2bf3086db035df57 325 Gene3D G3DSA:3.90.180.10 1 160 1.1E-33 T 29-03-2018 AM354_RS16685 fd543d209b3856ac2bf3086db035df57 325 Pfam PF00107 Zinc-binding dehydrogenase 158 282 4.1E-16 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AM354_RS16685 fd543d209b3856ac2bf3086db035df57 325 SMART SM00829 9 322 0.0056 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AM354_RS16685 fd543d209b3856ac2bf3086db035df57 325 SUPERFAMILY SSF50129 1 143 8.37E-45 T 29-03-2018 IPR011032 GroES-like AM354_RS17455 6347cca75b92d23ac54156488c33f851 465 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 20 421 8.6E-41 T 29-03-2018 IPR001248 Purine-cytosine permease GO:0005215|GO:0016020|GO:0055085 AM354_RS17455 6347cca75b92d23ac54156488c33f851 465 PIRSF PIRSF002744 2 465 7.1E-94 T 29-03-2018 IPR026030 Purine-cytosine permease Fcy2/21/22 GO:0005215|GO:0016021|GO:0055085 AM354_RS24295 c0f26d3da5faa56c1d4fc2792ba85cae 97 Pfam PF11115 Protein of unknown function (DUF2623) 3 93 3.3E-37 T 29-03-2018 IPR022574 Protein of unknown function DUF2623 AM354_RS24295 c0f26d3da5faa56c1d4fc2792ba85cae 97 ProDom PD065638 YGHW CYTOPLASMIC STY3323 1 91 2.0E-20 T 29-03-2018 IPR022574 Protein of unknown function DUF2623 AM354_RS05985 4e7805f594f80d32254b1f8af4cf6a3d 371 Pfam PF07005 Putative sugar-binding N-terminal domain 2 147 1.2E-32 T 29-03-2018 IPR010737 Putative sugar-binding, N-terminal domain AM354_RS05985 4e7805f594f80d32254b1f8af4cf6a3d 371 SUPERFAMILY SSF142764 2 362 2.22E-73 T 29-03-2018 AM354_RS05985 4e7805f594f80d32254b1f8af4cf6a3d 371 Gene3D G3DSA:3.40.50.10840 1 151 2.9E-39 T 29-03-2018 IPR010737 Putative sugar-binding, N-terminal domain AM354_RS05985 4e7805f594f80d32254b1f8af4cf6a3d 371 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 216 355 1.1E-16 T 29-03-2018 IPR031475 Putative nucleotide-binding C-terminal domain AM354_RS05985 4e7805f594f80d32254b1f8af4cf6a3d 371 Gene3D G3DSA:3.40.640.10 152 339 9.3E-5 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS15785 4d811b97185d177237f5063174e2b591 435 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 196 410 1.1E-52 T 29-03-2018 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 AM354_RS15785 4d811b97185d177237f5063174e2b591 435 SUPERFAMILY SSF51735 4 169 5.36E-49 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS15785 4d811b97185d177237f5063174e2b591 435 Gene3D G3DSA:3.90.110.10 158 434 3.9E-93 T 29-03-2018 AM354_RS15785 4d811b97185d177237f5063174e2b591 435 ProSitePatterns PS01324 Glycosyl hydrolases family 4 signature. 141 171 - T 29-03-2018 IPR019802 Glycoside hydrolase, family 4, conserved site GO:0004553|GO:0005975 AM354_RS15785 4d811b97185d177237f5063174e2b591 435 Gene3D G3DSA:3.40.50.720 1 157 3.2E-27 T 29-03-2018 AM354_RS15785 4d811b97185d177237f5063174e2b591 435 SUPERFAMILY SSF56327 172 434 1.1E-90 T 29-03-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AM354_RS15785 4d811b97185d177237f5063174e2b591 435 PRINTS PR00732 Glycosyl hydrolase family 4 signature 77 93 1.5E-43 T 29-03-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AM354_RS15785 4d811b97185d177237f5063174e2b591 435 PRINTS PR00732 Glycosyl hydrolase family 4 signature 5 20 1.5E-43 T 29-03-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AM354_RS15785 4d811b97185d177237f5063174e2b591 435 PRINTS PR00732 Glycosyl hydrolase family 4 signature 192 204 1.5E-43 T 29-03-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AM354_RS15785 4d811b97185d177237f5063174e2b591 435 PRINTS PR00732 Glycosyl hydrolase family 4 signature 141 158 1.5E-43 T 29-03-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AM354_RS15785 4d811b97185d177237f5063174e2b591 435 PRINTS PR00732 Glycosyl hydrolase family 4 signature 98 111 1.5E-43 T 29-03-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AM354_RS15785 4d811b97185d177237f5063174e2b591 435 PRINTS PR00732 Glycosyl hydrolase family 4 signature 112 132 1.5E-43 T 29-03-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AM354_RS15785 4d811b97185d177237f5063174e2b591 435 PRINTS PR00732 Glycosyl hydrolase family 4 signature 166 177 1.5E-43 T 29-03-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AM354_RS15785 4d811b97185d177237f5063174e2b591 435 Pfam PF02056 Family 4 glycosyl hydrolase 5 186 5.1E-54 T 29-03-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AM354_RS03620 6fd7ecaac7b4ba204206cc9cf8869e2b 311 Gene3D G3DSA:2.60.40.1090 182 311 7.4E-5 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS03620 6fd7ecaac7b4ba204206cc9cf8869e2b 311 SMART SM00972 93 156 2.8E-11 T 29-03-2018 IPR007893 Spore coat protein U AM354_RS03620 6fd7ecaac7b4ba204206cc9cf8869e2b 311 SMART SM00972 253 308 6.2E-11 T 29-03-2018 IPR007893 Spore coat protein U AM354_RS03620 6fd7ecaac7b4ba204206cc9cf8869e2b 311 SUPERFAMILY SSF49401 198 311 8.45E-5 T 29-03-2018 IPR008966 Adhesion domain AM354_RS03620 6fd7ecaac7b4ba204206cc9cf8869e2b 311 Pfam PF05229 Spore Coat Protein U domain 180 306 2.0E-26 T 29-03-2018 IPR007893 Spore coat protein U AM354_RS03620 6fd7ecaac7b4ba204206cc9cf8869e2b 311 Pfam PF05229 Spore Coat Protein U domain 22 154 1.1E-15 T 29-03-2018 IPR007893 Spore coat protein U AM354_RS03620 6fd7ecaac7b4ba204206cc9cf8869e2b 311 Gene3D G3DSA:2.60.40.1090 18 160 0.062 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS14805 1d4f136b26f7e4d46da2c5a8c37ae98d 491 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 35 204 1.8E-58 T 29-03-2018 IPR013116 Acetohydroxy acid isomeroreductase, NADPH-binding domain KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AM354_RS14805 1d4f136b26f7e4d46da2c5a8c37ae98d 491 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 35 367 1.4E-134 T 29-03-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AM354_RS14805 1d4f136b26f7e4d46da2c5a8c37ae98d 491 Gene3D G3DSA:3.40.50.720 56 208 1.0E-50 T 29-03-2018 AM354_RS14805 1d4f136b26f7e4d46da2c5a8c37ae98d 491 Gene3D G3DSA:3.40.50.720 1 42 6.1E-4 T 29-03-2018 AM354_RS14805 1d4f136b26f7e4d46da2c5a8c37ae98d 491 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 210 342 7.3E-27 T 29-03-2018 IPR000506 Acetohydroxy acid isomeroreductase C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AM354_RS14805 1d4f136b26f7e4d46da2c5a8c37ae98d 491 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 355 482 6.8E-23 T 29-03-2018 IPR000506 Acetohydroxy acid isomeroreductase C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AM354_RS14805 1d4f136b26f7e4d46da2c5a8c37ae98d 491 SUPERFAMILY SSF48179 210 370 7.82E-41 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM354_RS14805 1d4f136b26f7e4d46da2c5a8c37ae98d 491 SUPERFAMILY SSF48179 348 484 1.29E-40 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM354_RS14805 1d4f136b26f7e4d46da2c5a8c37ae98d 491 Gene3D G3DSA:1.10.1040.10 210 487 1.8E-86 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM354_RS14805 1d4f136b26f7e4d46da2c5a8c37ae98d 491 SUPERFAMILY SSF51735 30 209 1.26E-57 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS14805 1d4f136b26f7e4d46da2c5a8c37ae98d 491 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 22 485 38.953 T 29-03-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AM354_RS06310 c44a3cb9ec19dc3fec521be0579f91aa 477 Pfam PF02397 Bacterial sugar transferase 281 471 5.2E-64 T 29-03-2018 IPR003362 Bacterial sugar transferase AM354_RS06310 c44a3cb9ec19dc3fec521be0579f91aa 477 Gene3D G3DSA:3.40.50.20 145 239 1.2E-12 T 29-03-2018 AM354_RS06310 c44a3cb9ec19dc3fec521be0579f91aa 477 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 20 477 1.5E-120 T 29-03-2018 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase AM354_RS06310 c44a3cb9ec19dc3fec521be0579f91aa 477 Pfam PF13727 CoA-binding domain 84 206 6.4E-8 T 29-03-2018 AM354_RS06310 c44a3cb9ec19dc3fec521be0579f91aa 477 TIGRFAM TIGR03022 WbaP_sugtrans: undecaprenyl-phosphate galactose phosphotransferase WbaP 17 477 1.2E-169 T 29-03-2018 IPR017472 Undecaprenyl-phosphate galactose phosphotransferase, WbaP GO:0000271|GO:0005886|GO:0016021|GO:0016740 AM354_RS09660 7c6a9715fa7d963fa073e5e62e4567d5 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 8.1E-22 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS09660 7c6a9715fa7d963fa073e5e62e4567d5 294 SUPERFAMILY SSF53850 92 293 6.33E-39 T 29-03-2018 AM354_RS09660 7c6a9715fa7d963fa073e5e62e4567d5 294 Gene3D G3DSA:3.40.190.10 92 180 8.2E-11 T 29-03-2018 AM354_RS09660 7c6a9715fa7d963fa073e5e62e4567d5 294 Pfam PF03466 LysR substrate binding domain 91 292 7.8E-35 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS09660 7c6a9715fa7d963fa073e5e62e4567d5 294 Gene3D G3DSA:1.10.10.10 1 87 2.5E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS09660 7c6a9715fa7d963fa073e5e62e4567d5 294 SUPERFAMILY SSF46785 6 90 1.36E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS09660 7c6a9715fa7d963fa073e5e62e4567d5 294 Gene3D G3DSA:3.40.190.10 181 268 3.6E-23 T 29-03-2018 AM354_RS09660 7c6a9715fa7d963fa073e5e62e4567d5 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 1.6E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS09660 7c6a9715fa7d963fa073e5e62e4567d5 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 1.6E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS09660 7c6a9715fa7d963fa073e5e62e4567d5 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 1.6E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS22600 b4a046a73f8065fdf1b90d99c85c3723 409 Gene3D G3DSA:3.90.1150.10 260 397 1.8E-37 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS22600 b4a046a73f8065fdf1b90d99c85c3723 409 SUPERFAMILY SSF53383 9 395 9.82E-107 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS22600 b4a046a73f8065fdf1b90d99c85c3723 409 Gene3D G3DSA:3.90.1150.10 13 259 4.8E-43 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS22600 b4a046a73f8065fdf1b90d99c85c3723 409 Pfam PF00155 Aminotransferase class I and II 37 387 8.0E-58 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM354_RS25445 869a64b024c14a24d59438e5e79bb6a8 566 PIRSF PIRSF004862 6 566 3.2E-167 T 29-03-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AM354_RS25445 869a64b024c14a24d59438e5e79bb6a8 566 Gene3D G3DSA:3.30.70.1530 55 118 1.1E-8 T 29-03-2018 AM354_RS25445 869a64b024c14a24d59438e5e79bb6a8 566 Pfam PF08345 Flagellar M-ring protein C-terminal 255 445 4.5E-52 T 29-03-2018 IPR013556 Flagellar M-ring C-terminal AM354_RS25445 869a64b024c14a24d59438e5e79bb6a8 566 PRINTS PR01009 Flagellar M-ring protein signature 156 170 5.8E-44 T 29-03-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AM354_RS25445 869a64b024c14a24d59438e5e79bb6a8 566 PRINTS PR01009 Flagellar M-ring protein signature 372 396 5.8E-44 T 29-03-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AM354_RS25445 869a64b024c14a24d59438e5e79bb6a8 566 PRINTS PR01009 Flagellar M-ring protein signature 199 217 5.8E-44 T 29-03-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AM354_RS25445 869a64b024c14a24d59438e5e79bb6a8 566 PRINTS PR01009 Flagellar M-ring protein signature 124 142 5.8E-44 T 29-03-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AM354_RS25445 869a64b024c14a24d59438e5e79bb6a8 566 PRINTS PR01009 Flagellar M-ring protein signature 268 286 5.8E-44 T 29-03-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AM354_RS25445 869a64b024c14a24d59438e5e79bb6a8 566 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 16 565 1.5E-176 T 29-03-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AM354_RS25445 869a64b024c14a24d59438e5e79bb6a8 566 Pfam PF01514 Secretory protein of YscJ/FliF family 34 223 8.8E-76 T 29-03-2018 IPR006182 Secretory protein YscJ/FliF AM354_RS14365 19854659995598a5f675f168f91e3f69 375 SUPERFAMILY SSF53756 5 373 3.51E-73 T 29-03-2018 AM354_RS14365 19854659995598a5f675f168f91e3f69 375 Pfam PF00534 Glycosyl transferases group 1 194 351 2.8E-28 T 29-03-2018 IPR001296 Glycosyl transferase, family 1 AM354_RS14365 19854659995598a5f675f168f91e3f69 375 Pfam PF13439 Glycosyltransferase Family 4 17 182 3.7E-20 T 29-03-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193 AM354_RS14365 19854659995598a5f675f168f91e3f69 375 Gene3D G3DSA:3.40.50.2000 193 356 1.2E-37 T 29-03-2018 AM354_RS14365 19854659995598a5f675f168f91e3f69 375 Gene3D G3DSA:3.40.50.2000 8 192 2.5E-8 T 29-03-2018 AM354_RS08920 a1a9dbddfc7c273c93e3b149bdb8c185 148 SUPERFAMILY SSF103054 68 142 6.28E-14 T 29-03-2018 IPR023229 Type II secretion system protein M, periplasmic domain AM354_RS08920 a1a9dbddfc7c273c93e3b149bdb8c185 148 Gene3D G3DSA:3.30.1360.100 68 141 3.4E-18 T 29-03-2018 IPR023229 Type II secretion system protein M, periplasmic domain AM354_RS08920 a1a9dbddfc7c273c93e3b149bdb8c185 148 Pfam PF04612 Type II secretion system (T2SS), protein M 32 141 1.4E-18 T 29-03-2018 IPR007690 Type II secretion system, protein M GO:0009306 AM354_RS13485 3b5d99f59afb16f97dfa87f556863ea1 563 SMART SM00636 158 544 2.1E-166 T 29-03-2018 IPR011583 Chitinase II GO:0008061 AM354_RS13485 3b5d99f59afb16f97dfa87f556863ea1 563 ProSitePatterns PS01095 Chitinases family 18 active site. 307 315 - T 29-03-2018 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 AM354_RS13485 3b5d99f59afb16f97dfa87f556863ea1 563 Pfam PF08329 Chitinase A, N-terminal domain 23 155 7.3E-61 T 29-03-2018 IPR013540 Chitinase A N-terminal GO:0004568|GO:0006032 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 AM354_RS13485 3b5d99f59afb16f97dfa87f556863ea1 563 Gene3D G3DSA:2.60.40.10 24 130 3.7E-23 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS13485 3b5d99f59afb16f97dfa87f556863ea1 563 SMART SM00089 61 133 8.9E-8 T 29-03-2018 IPR022409 PKD/Chitinase domain AM354_RS13485 3b5d99f59afb16f97dfa87f556863ea1 563 SUPERFAMILY SSF51445 517 560 9.32E-100 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily AM354_RS13485 3b5d99f59afb16f97dfa87f556863ea1 563 SUPERFAMILY SSF51445 134 444 9.32E-100 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily AM354_RS13485 3b5d99f59afb16f97dfa87f556863ea1 563 SUPERFAMILY SSF81296 24 132 1.15E-39 T 29-03-2018 IPR014756 Immunoglobulin E-set AM354_RS13485 3b5d99f59afb16f97dfa87f556863ea1 563 Pfam PF00704 Glycosyl hydrolases family 18 160 544 8.6E-89 T 29-03-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 AM354_RS13485 3b5d99f59afb16f97dfa87f556863ea1 563 Gene3D G3DSA:3.20.20.80 132 563 6.5E-83 T 29-03-2018 AM354_RS13485 3b5d99f59afb16f97dfa87f556863ea1 563 SUPERFAMILY SSF54556 444 516 7.61E-22 T 29-03-2018 IPR029070 Chitinase insertion domain AM354_RS11350 1c2fad8563f4ac1f71716e0ccfef3e9d 375 Pfam PF00465 Iron-containing alcohol dehydrogenase 11 300 1.3E-68 T 29-03-2018 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 AM354_RS11350 1c2fad8563f4ac1f71716e0ccfef3e9d 375 SUPERFAMILY SSF56796 8 369 3.79E-63 T 29-03-2018 AM354_RS11350 1c2fad8563f4ac1f71716e0ccfef3e9d 375 Gene3D G3DSA:3.40.50.1970 10 181 1.3E-31 T 29-03-2018 AM354_RS11350 1c2fad8563f4ac1f71716e0ccfef3e9d 375 Gene3D G3DSA:1.20.1090.10 183 339 2.8E-25 T 29-03-2018 AM354_RS19975 734cca961d7fe0790b5641ce5790265b 228 TIGRFAM TIGR02248 mutH_TIGR: DNA mismatch repair endonuclease MutH 10 226 3.7E-109 T 29-03-2018 IPR004230 DNA mismatch repair protein MutH GO:0003677|GO:0004519|GO:0006304 AM354_RS19975 734cca961d7fe0790b5641ce5790265b 228 Gene3D G3DSA:3.40.600.10 8 228 1.3E-55 T 29-03-2018 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II GO:0003677|GO:0004519 AM354_RS19975 734cca961d7fe0790b5641ce5790265b 228 SUPERFAMILY SSF52980 8 226 1.34E-79 T 29-03-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AM354_RS19975 734cca961d7fe0790b5641ce5790265b 228 Hamap MF_00759 DNA mismatch repair protein MutH [mutH]. 1 228 154.726 T 29-03-2018 IPR004230 DNA mismatch repair protein MutH GO:0003677|GO:0004519|GO:0006304 AM354_RS19975 734cca961d7fe0790b5641ce5790265b 228 Pfam PF02976 DNA mismatch repair enzyme MutH 59 157 2.1E-32 T 29-03-2018 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II GO:0003677|GO:0004519 AM354_RS19975 734cca961d7fe0790b5641ce5790265b 228 SMART SM00927 59 157 4.8E-63 T 29-03-2018 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II GO:0003677|GO:0004519 AM354_RS09455 1b48574180ebde91d5f9c880f626da15 94 Pfam PF07338 Protein of unknown function (DUF1471) 38 94 6.6E-20 T 29-03-2018 IPR010854 Domain of unknown function DUF1471 AM354_RS09455 1b48574180ebde91d5f9c880f626da15 94 SUPERFAMILY SSF159871 4 94 1.7E-22 T 29-03-2018 IPR010854 Domain of unknown function DUF1471 AM354_RS09455 1b48574180ebde91d5f9c880f626da15 94 Gene3D G3DSA:3.30.1660.10 26 94 8.0E-23 T 29-03-2018 IPR025543 Dodecin-like AM354_RS10960 df3d9b5c4ff28c5b6a99f2241623b008 215 SMART SM00855 3 157 2.0E-22 T 29-03-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AM354_RS10960 df3d9b5c4ff28c5b6a99f2241623b008 215 SUPERFAMILY SSF53254 1 209 1.31E-54 T 29-03-2018 IPR029033 Histidine phosphatase superfamily AM354_RS10960 df3d9b5c4ff28c5b6a99f2241623b008 215 Gene3D G3DSA:3.40.50.1240 1 213 1.3E-52 T 29-03-2018 IPR029033 Histidine phosphatase superfamily AM354_RS10960 df3d9b5c4ff28c5b6a99f2241623b008 215 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 194 1.3E-55 T 29-03-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AM354_RS10960 df3d9b5c4ff28c5b6a99f2241623b008 215 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 6 15 - T 29-03-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 AM354_RS10960 df3d9b5c4ff28c5b6a99f2241623b008 215 PIRSF PIRSF000709 2 173 1.1E-10 T 29-03-2018 AM354_RS10960 df3d9b5c4ff28c5b6a99f2241623b008 215 Hamap MF_01040 Probable phosphoglycerate mutase GpmB [gpmB]. 1 215 53.956 T 29-03-2018 IPR023086 Phosphoglycerate mutase, GpmB, probable GO:0004619|GO:0006096 AM354_RS08875 b1b25176b69fd6c03f16217fc0f05535 285 Pfam PF00950 ABC 3 transport family 14 273 1.1E-50 T 29-03-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 AM354_RS08875 b1b25176b69fd6c03f16217fc0f05535 285 SUPERFAMILY SSF81345 8 270 1.2E-19 T 29-03-2018 IPR029022 ABC transporter, BtuC-like AM354_RS08875 b1b25176b69fd6c03f16217fc0f05535 285 Gene3D G3DSA:1.10.3470.10 12 281 5.4E-19 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS07065 9c30ad38763d334a6dec68d58aaf3331 376 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 142 265 7.5E-9 T 29-03-2018 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 AM354_RS07065 9c30ad38763d334a6dec68d58aaf3331 376 Gene3D G3DSA:3.40.50.720 1 142 3.5E-40 T 29-03-2018 AM354_RS07065 9c30ad38763d334a6dec68d58aaf3331 376 SUPERFAMILY SSF51735 3 158 9.44E-48 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS07065 9c30ad38763d334a6dec68d58aaf3331 376 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 130 8.1E-23 T 29-03-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AM354_RS07065 9c30ad38763d334a6dec68d58aaf3331 376 Gene3D G3DSA:3.30.360.10 143 374 2.7E-48 T 29-03-2018 AM354_RS07065 9c30ad38763d334a6dec68d58aaf3331 376 SUPERFAMILY SSF55347 135 310 1.96E-35 T 29-03-2018 AM354_RS26160 62a3de5abc42eadbac30d10421eb8b49 83 Gene3D G3DSA:2.10.260.10 2 47 2.8E-8 T 29-03-2018 AM354_RS26160 62a3de5abc42eadbac30d10421eb8b49 83 SMART SM00966 4 50 6.5E-5 T 29-03-2018 IPR007159 SpoVT-AbrB domain GO:0003677 AM354_RS26160 62a3de5abc42eadbac30d10421eb8b49 83 SUPERFAMILY SSF89447 1 41 6.1E-6 T 29-03-2018 AM354_RS23875 b1854b298ac28f2c2bea392d2fa3b330 356 Pfam PF03739 Predicted permease YjgP/YjgQ family 6 345 7.8E-53 T 29-03-2018 IPR005495 Permease LptG/LptF-related GO:0016021 AM354_RS23875 b1854b298ac28f2c2bea392d2fa3b330 356 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 3 345 1.6E-81 T 29-03-2018 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 AM354_RS15510 5db75effe8774d804bffb78edab680f0 108 Pfam PF00581 Rhodanese-like domain 11 98 2.8E-14 T 29-03-2018 IPR001763 Rhodanese-like domain AM354_RS15510 5db75effe8774d804bffb78edab680f0 108 SUPERFAMILY SSF52821 2 102 1.7E-28 T 29-03-2018 IPR001763 Rhodanese-like domain AM354_RS15510 5db75effe8774d804bffb78edab680f0 108 Hamap MF_01009 Thiosulfate sulfurtransferase GlpE [glpE]. 2 105 32.5 T 29-03-2018 IPR023695 Thiosulfate sulfurtransferase, bacterial GO:0004792|GO:0005737 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 AM354_RS15510 5db75effe8774d804bffb78edab680f0 108 SMART SM00450 7 102 6.3E-21 T 29-03-2018 IPR001763 Rhodanese-like domain AM354_RS15510 5db75effe8774d804bffb78edab680f0 108 Gene3D G3DSA:3.40.250.10 1 108 3.9E-28 T 29-03-2018 IPR001763 Rhodanese-like domain AM354_RS14525 87aae18775004326addbf3c6c1f9c568 248 SUPERFAMILY SSF52343 102 248 9.17E-39 T 29-03-2018 AM354_RS14525 87aae18775004326addbf3c6c1f9c568 248 Gene3D G3DSA:3.40.50.80 97 248 1.4E-25 T 29-03-2018 AM354_RS14525 87aae18775004326addbf3c6c1f9c568 248 Gene3D G3DSA:2.40.30.10 1 95 1.6E-16 T 29-03-2018 AM354_RS14525 87aae18775004326addbf3c6c1f9c568 248 SUPERFAMILY SSF63380 3 99 8.78E-24 T 29-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AM354_RS14525 87aae18775004326addbf3c6c1f9c568 248 Pfam PF00970 Oxidoreductase FAD-binding domain 29 90 3.8E-7 T 29-03-2018 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 AM354_RS14525 87aae18775004326addbf3c6c1f9c568 248 Pfam PF00175 Oxidoreductase NAD-binding domain 111 222 1.5E-18 T 29-03-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AM354_RS19735 51ea6a14b0c8d4d05709048862bee732 269 Pfam PF17409 MoaF C-terminal domain 151 257 9.4E-34 T 29-03-2018 IPR035348 MoaF, C-terminal domain AM354_RS19735 51ea6a14b0c8d4d05709048862bee732 269 Gene3D G3DSA:2.40.128.20 153 244 6.1E-13 T 29-03-2018 IPR012674 Calycin AM354_RS19735 51ea6a14b0c8d4d05709048862bee732 269 Gene3D G3DSA:2.40.128.20 35 128 3.1E-5 T 29-03-2018 IPR012674 Calycin AM354_RS19735 51ea6a14b0c8d4d05709048862bee732 269 Pfam PF10703 MoaF N-terminal domain 14 118 2.5E-17 T 29-03-2018 IPR024724 Molybdenum cofactor biosynthesis protein F, N-terminal AM354_RS19320 9ca30e00d9f4d310b777525df8ab5d4d 343 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 5 329 6.4E-38 T 29-03-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 AM354_RS19320 9ca30e00d9f4d310b777525df8ab5d4d 343 Gene3D G3DSA:3.20.20.210 2 343 1.1E-86 T 29-03-2018 AM354_RS19320 9ca30e00d9f4d310b777525df8ab5d4d 343 SUPERFAMILY SSF51726 7 341 5.1E-68 T 29-03-2018 AM354_RS19320 9ca30e00d9f4d310b777525df8ab5d4d 343 PIRSF PIRSF005632 1 343 1.1E-198 T 29-03-2018 IPR016456 Predicted cobalamin-independent methionine synthase, catalytic subunit AM354_RS10075 5f783c26cdde3b6e1d4e449578360b46 75 Pfam PF04606 Ogr/Delta-like zinc finger 3 49 6.6E-20 T 29-03-2018 IPR007684 Zinc finger, Ogr/Delta-type AM354_RS06830 59738363d035061eab17b8b65e01597b 219 Gene3D G3DSA:1.10.3720.10 1 218 1.1E-44 T 29-03-2018 AM354_RS06830 59738363d035061eab17b8b65e01597b 219 SUPERFAMILY SSF161098 13 202 1.96E-44 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS06830 59738363d035061eab17b8b65e01597b 219 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 217 1.1E-23 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS06830 59738363d035061eab17b8b65e01597b 219 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 111 6.1E-32 T 29-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 AM354_RS11340 13387fe390380e5c01af3a8ca1b2662e 433 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 31 53 1.2E-5 T 29-03-2018 AM354_RS11340 13387fe390380e5c01af3a8ca1b2662e 433 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 163 178 1.2E-5 T 29-03-2018 AM354_RS11340 13387fe390380e5c01af3a8ca1b2662e 433 Pfam PF01266 FAD dependent oxidoreductase 31 385 2.9E-34 T 29-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AM354_RS11340 13387fe390380e5c01af3a8ca1b2662e 433 Gene3D G3DSA:3.50.50.60 20 401 5.5E-30 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS11340 13387fe390380e5c01af3a8ca1b2662e 433 SUPERFAMILY SSF51905 30 255 6.15E-36 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS11340 13387fe390380e5c01af3a8ca1b2662e 433 SUPERFAMILY SSF51905 347 412 6.15E-36 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS24620 0bdf8466641a09708143eb0ad3143b87 205 Gene3D G3DSA:1.20.1050.10 94 204 3.3E-23 T 29-03-2018 AM354_RS24620 0bdf8466641a09708143eb0ad3143b87 205 Gene3D G3DSA:3.40.30.10 1 93 1.2E-28 T 29-03-2018 AM354_RS24620 0bdf8466641a09708143eb0ad3143b87 205 SUPERFAMILY SSF47616 79 194 4.04E-26 T 29-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like AM354_RS24620 0bdf8466641a09708143eb0ad3143b87 205 Pfam PF00043 Glutathione S-transferase, C-terminal domain 121 191 2.8E-9 T 29-03-2018 IPR004046 Glutathione S-transferase, C-terminal AM354_RS24620 0bdf8466641a09708143eb0ad3143b87 205 Pfam PF13417 Glutathione S-transferase, N-terminal domain 6 79 2.1E-15 T 29-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AM354_RS24620 0bdf8466641a09708143eb0ad3143b87 205 SUPERFAMILY SSF52833 1 85 7.48E-21 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS00865 5aae4f5ccba985d6a15fa1e8e2f63a79 265 SUPERFAMILY SSF53474 11 264 4.97E-28 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS00865 5aae4f5ccba985d6a15fa1e8e2f63a79 265 Gene3D G3DSA:3.40.50.1820 4 265 7.9E-24 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS00865 5aae4f5ccba985d6a15fa1e8e2f63a79 265 Pfam PF00561 alpha/beta hydrolase fold 23 142 6.4E-12 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS14465 68d46caa482e8eeca0cacab17df4281d 223 Pfam PF11769 Protein of unknown function (DUF3313) 18 215 1.2E-53 T 29-03-2018 IPR021747 Protein of unknown function DUF3313 AM354_RS14465 68d46caa482e8eeca0cacab17df4281d 223 Gene3D G3DSA:3.40.190.10 1 222 1.5E-4 T 29-03-2018 AM354_RS07510 032a39458490eba7464d10930d321341 283 Gene3D G3DSA:2.30.260.10 154 282 8.2E-26 T 29-03-2018 AM354_RS07510 032a39458490eba7464d10930d321341 283 Pfam PF07313 Protein of unknown function (DUF1460) 76 273 1.3E-76 T 29-03-2018 IPR010846 Protein of unknown function DUF1460 AM354_RS07510 032a39458490eba7464d10930d321341 283 Gene3D G3DSA:1.10.3670.10 44 153 8.1E-35 T 29-03-2018 AM354_RS07510 032a39458490eba7464d10930d321341 283 SUPERFAMILY SSF54001 45 281 1.37E-78 T 29-03-2018 AM354_RS23565 a2bb004f2b8a08041bfb490de508b916 191 Pfam PF00877 NlpC/P60 family 82 186 1.3E-31 T 29-03-2018 IPR000064 Endopeptidase, NLPC/P60 domain AM354_RS23565 a2bb004f2b8a08041bfb490de508b916 191 Gene3D G3DSA:3.90.1720.10 65 191 4.5E-38 T 29-03-2018 AM354_RS23565 a2bb004f2b8a08041bfb490de508b916 191 SUPERFAMILY SSF54001 70 188 6.54E-39 T 29-03-2018 AM354_RS10225 6eae52d0bf06e28a6f31f3729d693282 323 PRINTS PR00069 Aldo-keto reductase signature 111 129 1.1E-5 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM354_RS10225 6eae52d0bf06e28a6f31f3729d693282 323 PRINTS PR00069 Aldo-keto reductase signature 45 69 1.1E-5 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM354_RS10225 6eae52d0bf06e28a6f31f3729d693282 323 PRINTS PR00069 Aldo-keto reductase signature 142 159 1.1E-5 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM354_RS10225 6eae52d0bf06e28a6f31f3729d693282 323 SUPERFAMILY SSF51430 1 311 7.07E-101 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS10225 6eae52d0bf06e28a6f31f3729d693282 323 Gene3D G3DSA:3.20.20.100 3 315 1.4E-99 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS10225 6eae52d0bf06e28a6f31f3729d693282 323 Pfam PF00248 Aldo/keto reductase family 15 310 2.9E-77 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM354_RS14290 c045759ca195bcb24e1ee579fa0c913e 287 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 1 287 5.0E-132 T 29-03-2018 IPR005229 Conserved hypothetical protein CHP00255 AM354_RS14290 c045759ca195bcb24e1ee579fa0c913e 287 Pfam PF03755 YicC-like family, N-terminal region 2 153 5.6E-44 T 29-03-2018 IPR013527 YicC-like, N-terminal AM354_RS14290 c045759ca195bcb24e1ee579fa0c913e 287 Pfam PF08340 Domain of unknown function (DUF1732) 203 287 3.7E-34 T 29-03-2018 IPR013551 Domain of unknown function DUF1732 AM354_RS12585 843e252d8782d2610a06278a21ef8fa0 447 Pfam PF00668 Condensation domain 11 431 6.1E-38 T 29-03-2018 IPR001242 Condensation domain AM354_RS12585 843e252d8782d2610a06278a21ef8fa0 447 SUPERFAMILY SSF52777 13 188 3.22E-24 T 29-03-2018 AM354_RS12585 843e252d8782d2610a06278a21ef8fa0 447 Gene3D G3DSA:3.30.559.10 2 203 5.9E-18 T 29-03-2018 AM354_RS12585 843e252d8782d2610a06278a21ef8fa0 447 SUPERFAMILY SSF52777 194 437 6.11E-29 T 29-03-2018 AM354_RS03660 82a2b015d03e34cfe45f64cdaa0740be 434 ProSitePatterns PS00216 Sugar transport proteins signature 1. 296 312 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM354_RS03660 82a2b015d03e34cfe45f64cdaa0740be 434 Pfam PF07690 Major Facilitator Superfamily 253 428 9.5E-12 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS03660 82a2b015d03e34cfe45f64cdaa0740be 434 Pfam PF00083 Sugar (and other) transporter 19 228 1.3E-29 T 29-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AM354_RS03660 82a2b015d03e34cfe45f64cdaa0740be 434 SUPERFAMILY SSF103473 9 432 9.81E-67 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS03660 82a2b015d03e34cfe45f64cdaa0740be 434 Gene3D G3DSA:1.20.1250.20 3 228 2.2E-26 T 29-03-2018 AM354_RS03660 82a2b015d03e34cfe45f64cdaa0740be 434 ProSitePatterns PS00217 Sugar transport proteins signature 2. 126 151 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM354_RS03660 82a2b015d03e34cfe45f64cdaa0740be 434 Gene3D G3DSA:1.20.1250.20 239 434 3.2E-21 T 29-03-2018 AM354_RS07385 01b08c3298f1d75e21b73227485875bc 241 Pfam PF13531 Bacterial extracellular solute-binding protein 5 236 8.6E-38 T 29-03-2018 AM354_RS07385 01b08c3298f1d75e21b73227485875bc 241 SUPERFAMILY SSF53850 3 237 3.49E-35 T 29-03-2018 AM354_RS07385 01b08c3298f1d75e21b73227485875bc 241 Gene3D G3DSA:3.40.190.10 3 81 0.0032 T 29-03-2018 AM354_RS07385 01b08c3298f1d75e21b73227485875bc 241 Gene3D G3DSA:3.40.190.10 164 219 0.035 T 29-03-2018 AM354_RS07385 01b08c3298f1d75e21b73227485875bc 241 Gene3D G3DSA:3.40.190.10 220 241 0.059 T 29-03-2018 AM354_RS07385 01b08c3298f1d75e21b73227485875bc 241 Gene3D G3DSA:3.40.190.10 82 163 1.3E-11 T 29-03-2018 AM354_RS08475 b4604684327e596a506351ef2fbc13c6 183 Pfam PF03358 NADPH-dependent FMN reductase 35 126 3.7E-10 T 29-03-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AM354_RS08475 b4604684327e596a506351ef2fbc13c6 183 SUPERFAMILY SSF52218 1 182 1.44E-44 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS08475 b4604684327e596a506351ef2fbc13c6 183 ProSitePatterns PS00201 Flavodoxin signature. 6 22 - T 29-03-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 AM354_RS08475 b4604684327e596a506351ef2fbc13c6 183 Gene3D G3DSA:3.40.50.360 1 183 4.6E-38 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS13460 975208d22aaea2289e69a767e5ef7e09 329 Pfam PF00005 ABC transporter 33 184 3.9E-31 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS13460 975208d22aaea2289e69a767e5ef7e09 329 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 235 319 1.5E-25 T 29-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AM354_RS13460 975208d22aaea2289e69a767e5ef7e09 329 Gene3D G3DSA:3.40.50.300 4 327 6.5E-79 T 29-03-2018 AM354_RS13460 975208d22aaea2289e69a767e5ef7e09 329 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 301 2.0E-18 T 29-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AM354_RS13460 975208d22aaea2289e69a767e5ef7e09 329 SUPERFAMILY SSF52540 8 256 1.39E-71 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS13460 975208d22aaea2289e69a767e5ef7e09 329 SMART SM00382 42 234 4.6E-12 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS13460 975208d22aaea2289e69a767e5ef7e09 329 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS16565 4d86742ba2d07cee69f35090e4c7e3ef 86 SUPERFAMILY SSF159871 3 86 2.35E-21 T 29-03-2018 IPR010854 Domain of unknown function DUF1471 AM354_RS16565 4d86742ba2d07cee69f35090e4c7e3ef 86 Gene3D G3DSA:3.30.1660.10 21 86 2.0E-18 T 29-03-2018 IPR025543 Dodecin-like AM354_RS16565 4d86742ba2d07cee69f35090e4c7e3ef 86 Pfam PF07338 Protein of unknown function (DUF1471) 35 85 1.6E-16 T 29-03-2018 IPR010854 Domain of unknown function DUF1471 AM354_RS25250 4c678f784b29dea9d78a553e5ef17062 290 PIRSF PIRSF000410 9 288 3.1E-98 T 29-03-2018 IPR026024 Chemotaxis protein methyltransferase CheR AM354_RS25250 4c678f784b29dea9d78a553e5ef17062 290 SMART SM00138 27 287 1.4E-115 T 29-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AM354_RS25250 4c678f784b29dea9d78a553e5ef17062 290 SUPERFAMILY SSF47757 16 94 5.89E-25 T 29-03-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal AM354_RS25250 4c678f784b29dea9d78a553e5ef17062 290 PRINTS PR00996 Glutamate methyltransferase family signature 121 141 1.7E-45 T 29-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AM354_RS25250 4c678f784b29dea9d78a553e5ef17062 290 PRINTS PR00996 Glutamate methyltransferase family signature 155 171 1.7E-45 T 29-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AM354_RS25250 4c678f784b29dea9d78a553e5ef17062 290 PRINTS PR00996 Glutamate methyltransferase family signature 246 269 1.7E-45 T 29-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AM354_RS25250 4c678f784b29dea9d78a553e5ef17062 290 PRINTS PR00996 Glutamate methyltransferase family signature 49 62 1.7E-45 T 29-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AM354_RS25250 4c678f784b29dea9d78a553e5ef17062 290 PRINTS PR00996 Glutamate methyltransferase family signature 227 241 1.7E-45 T 29-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AM354_RS25250 4c678f784b29dea9d78a553e5ef17062 290 PRINTS PR00996 Glutamate methyltransferase family signature 88 100 1.7E-45 T 29-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AM354_RS25250 4c678f784b29dea9d78a553e5ef17062 290 SUPERFAMILY SSF53335 95 284 1.06E-57 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS25250 4c678f784b29dea9d78a553e5ef17062 290 Pfam PF01739 CheR methyltransferase, SAM binding domain 95 282 2.1E-56 T 29-03-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal AM354_RS25250 4c678f784b29dea9d78a553e5ef17062 290 Gene3D G3DSA:1.10.155.10 19 93 5.3E-27 T 29-03-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal AM354_RS25250 4c678f784b29dea9d78a553e5ef17062 290 Pfam PF03705 CheR methyltransferase, all-alpha domain 29 80 6.7E-19 T 29-03-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal AM354_RS25250 4c678f784b29dea9d78a553e5ef17062 290 Gene3D G3DSA:3.40.50.150 94 287 2.4E-45 T 29-03-2018 AM354_RS00830 4ce1f099c7bc134ee508a1a7b2aea939 453 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 4 255 35.848 T 29-03-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 AM354_RS00830 4ce1f099c7bc134ee508a1a7b2aea939 453 Gene3D G3DSA:3.20.20.70 5 255 2.6E-63 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS00830 4ce1f099c7bc134ee508a1a7b2aea939 453 Pfam PF00218 Indole-3-glycerol phosphate synthase 6 252 9.8E-98 T 29-03-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 AM354_RS00830 4ce1f099c7bc134ee508a1a7b2aea939 453 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 258 448 2.1E-57 T 29-03-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 AM354_RS00830 4ce1f099c7bc134ee508a1a7b2aea939 453 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 256 453 31.522 T 29-03-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 AM354_RS00830 4ce1f099c7bc134ee508a1a7b2aea939 453 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 51 69 - T 29-03-2018 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 AM354_RS00830 4ce1f099c7bc134ee508a1a7b2aea939 453 Gene3D G3DSA:3.20.20.70 258 453 1.3E-57 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS00830 4ce1f099c7bc134ee508a1a7b2aea939 453 SUPERFAMILY SSF51366 258 451 2.51E-58 T 29-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 AM354_RS00830 4ce1f099c7bc134ee508a1a7b2aea939 453 SUPERFAMILY SSF51366 4 253 1.01E-84 T 29-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 AM354_RS13360 06b5ee9d89971605290806f0cefd5527 350 Gene3D G3DSA:3.30.1890.10 55 320 3.3E-77 T 29-03-2018 AM354_RS13360 06b5ee9d89971605290806f0cefd5527 350 Pfam PF02706 Chain length determinant protein 16 70 1.2E-11 T 29-03-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 AM354_RS13360 06b5ee9d89971605290806f0cefd5527 350 Hamap MF_02025 ECA polysaccharide chain length modulation protein [wzzE]. 9 349 58.478 T 29-03-2018 IPR032895 ECA polysaccharide chain length modulation protein WzzE GO:0009246|GO:0016021 AM354_RS13360 06b5ee9d89971605290806f0cefd5527 350 SUPERFAMILY SSF160355 55 320 9.94E-82 T 29-03-2018 AM354_RS07685 08f02d9184e8434509b7b74ab9a800a3 155 SUPERFAMILY SSF54690 5 150 2.35E-54 T 29-03-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AM354_RS07685 08f02d9184e8434509b7b74ab9a800a3 155 Gene3D G3DSA:3.90.1170.40 2 150 2.9E-56 T 29-03-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AM354_RS07685 08f02d9184e8434509b7b74ab9a800a3 155 Pfam PF02391 MoaE protein 10 121 6.6E-36 T 29-03-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AM354_RS01640 71aa9372f202dc1a68ea585720308e20 477 SUPERFAMILY SSF53720 2 474 1.57E-158 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM354_RS01640 71aa9372f202dc1a68ea585720308e20 477 Gene3D G3DSA:3.40.605.10 2 266 7.5E-93 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM354_RS01640 71aa9372f202dc1a68ea585720308e20 477 Pfam PF00171 Aldehyde dehydrogenase family 16 472 2.9E-156 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM354_RS01640 71aa9372f202dc1a68ea585720308e20 477 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 276 287 - T 29-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AM354_RS01640 71aa9372f202dc1a68ea585720308e20 477 Gene3D G3DSA:3.40.309.10 267 458 9.1E-68 T 29-03-2018 AM354_RS14925 7c2dac6992aeac53de348bb1a3de8508 317 Pfam PF02653 Branched-chain amino acid transport system / permease component 42 309 1.9E-36 T 29-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AM354_RS14925 7c2dac6992aeac53de348bb1a3de8508 317 Gene3D G3DSA:1.10.3470.10 8 316 2.1E-20 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS12375 98017abe60265bc617e7f811ddcc540c 181 SMART SM00479 7 180 1.5E-21 T 29-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AM354_RS12375 98017abe60265bc617e7f811ddcc540c 181 SUPERFAMILY SSF53098 4 180 2.7E-48 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS12375 98017abe60265bc617e7f811ddcc540c 181 Gene3D G3DSA:3.30.420.10 2 181 3.0E-26 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS12375 98017abe60265bc617e7f811ddcc540c 181 Hamap MF_00045 Oligoribonuclease [orn]. 3 181 44.717 T 29-03-2018 IPR022894 Oligoribonuclease GO:0000175 AM354_RS12375 98017abe60265bc617e7f811ddcc540c 181 Pfam PF00929 Exonuclease 9 170 4.9E-37 T 29-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AM354_RS03655 4d0736260513f6810c5b2a583996b869 539 Gene3D G3DSA:3.90.228.20 311 537 8.3E-92 T 29-03-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 AM354_RS03655 4d0736260513f6810c5b2a583996b869 539 Gene3D G3DSA:3.90.228.20 227 310 9.7E-30 T 29-03-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 AM354_RS03655 4d0736260513f6810c5b2a583996b869 539 SUPERFAMILY SSF53795 228 538 2.24E-126 T 29-03-2018 AM354_RS03655 4d0736260513f6810c5b2a583996b869 539 PIRSF PIRSF006294 2 539 4.0E-227 T 29-03-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 AM354_RS03655 4d0736260513f6810c5b2a583996b869 539 TIGRFAM TIGR00224 pckA: phosphoenolpyruvate carboxykinase (ATP) 7 538 4.9E-274 T 29-03-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 AM354_RS03655 4d0736260513f6810c5b2a583996b869 539 Pfam PF01293 Phosphoenolpyruvate carboxykinase 21 489 1.8E-209 T 29-03-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 AM354_RS03655 4d0736260513f6810c5b2a583996b869 539 Hamap MF_00453 Phosphoenolpyruvate carboxykinase (ATP) [pckA]. 15 537 54.879 T 29-03-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 AM354_RS03655 4d0736260513f6810c5b2a583996b869 539 SUPERFAMILY SSF68923 8 226 2.79E-88 T 29-03-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 AM354_RS03655 4d0736260513f6810c5b2a583996b869 539 Gene3D G3DSA:3.40.449.10 22 226 3.1E-77 T 29-03-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 AM354_RS03655 4d0736260513f6810c5b2a583996b869 539 ProSitePatterns PS00532 Phosphoenolpyruvate carboxykinase (ATP) signature. 264 279 - T 29-03-2018 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 AM354_RS19140 78dc15acf1acd00f730844dd84a3d2e2 306 ProSitePatterns PS01053 Arginase family signature. 228 249 - T 29-03-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 AM354_RS19140 78dc15acf1acd00f730844dd84a3d2e2 306 Gene3D G3DSA:3.40.800.10 4 306 1.4E-92 T 29-03-2018 AM354_RS19140 78dc15acf1acd00f730844dd84a3d2e2 306 PIRSF PIRSF036979 15 304 1.3E-98 T 29-03-2018 IPR006035 Ureohydrolase GO:0046872 AM354_RS19140 78dc15acf1acd00f730844dd84a3d2e2 306 SUPERFAMILY SSF52768 14 301 6.3E-91 T 29-03-2018 AM354_RS19140 78dc15acf1acd00f730844dd84a3d2e2 306 Hamap MF_01418 Agmatinase [speB]. 1 304 67.667 T 29-03-2018 IPR023694 Agmatinase GO:0008783|GO:0009446|GO:0030145 KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305 AM354_RS19140 78dc15acf1acd00f730844dd84a3d2e2 306 TIGRFAM TIGR01230 agmatinase: agmatinase 23 298 6.0E-108 T 29-03-2018 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|Reactome: R-HSA-351143 AM354_RS19140 78dc15acf1acd00f730844dd84a3d2e2 306 Pfam PF00491 Arginase family 34 296 2.1E-85 T 29-03-2018 IPR006035 Ureohydrolase GO:0046872 AM354_RS00795 e775843b64a2eb0cf6099cf6eca8aa8e 567 SUPERFAMILY SSF52091 444 537 3.53E-9 T 29-03-2018 IPR002645 STAS domain AM354_RS00795 e775843b64a2eb0cf6099cf6eca8aa8e 567 Gene3D G3DSA:3.30.750.24 439 564 2.9E-17 T 29-03-2018 IPR002645 STAS domain AM354_RS00795 e775843b64a2eb0cf6099cf6eca8aa8e 567 Pfam PF01740 STAS domain 445 531 1.3E-11 T 29-03-2018 IPR002645 STAS domain AM354_RS00795 e775843b64a2eb0cf6099cf6eca8aa8e 567 Pfam PF00916 Sulfate permease family 24 380 3.5E-80 T 29-03-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 AM354_RS09055 f5b4aa496e42140b09f89a1b05c01913 137 SUPERFAMILY SSF54637 5 129 3.1E-36 T 29-03-2018 IPR029069 HotDog domain AM354_RS09055 f5b4aa496e42140b09f89a1b05c01913 137 PIRSF PIRSF003230 1 134 4.8E-21 T 29-03-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 AM354_RS09055 f5b4aa496e42140b09f89a1b05c01913 137 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 7 117 6.0E-31 T 29-03-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 AM354_RS09055 f5b4aa496e42140b09f89a1b05c01913 137 Pfam PF13279 Thioesterase-like superfamily 11 120 1.6E-17 T 29-03-2018 AM354_RS09055 f5b4aa496e42140b09f89a1b05c01913 137 Gene3D G3DSA:3.10.129.10 1 134 1.0E-35 T 29-03-2018 AM354_RS00350 4a17946e40dadec6652de4408ab27977 641 Gene3D G3DSA:1.10.460.10 479 641 6.4E-22 T 29-03-2018 AM354_RS00350 4a17946e40dadec6652de4408ab27977 641 Gene3D G3DSA:1.10.460.10 157 358 2.5E-39 T 29-03-2018 AM354_RS00350 4a17946e40dadec6652de4408ab27977 641 Pfam PF01131 DNA topoisomerase 158 593 8.6E-111 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AM354_RS00350 4a17946e40dadec6652de4408ab27977 641 TIGRFAM TIGR01056 topB: DNA topoisomerase III 1 633 2.2E-281 T 29-03-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 AM354_RS00350 4a17946e40dadec6652de4408ab27977 641 SMART SM00436 128 223 5.9E-37 T 29-03-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 AM354_RS00350 4a17946e40dadec6652de4408ab27977 641 SUPERFAMILY SSF56712 1 607 2.09E-188 T 29-03-2018 IPR023405 DNA topoisomerase, type IA, core domain AM354_RS00350 4a17946e40dadec6652de4408ab27977 641 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 317 332 - T 29-03-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 AM354_RS00350 4a17946e40dadec6652de4408ab27977 641 Gene3D G3DSA:3.40.50.140 1 156 3.3E-42 T 29-03-2018 AM354_RS00350 4a17946e40dadec6652de4408ab27977 641 SMART SM00493 1 124 3.1E-31 T 29-03-2018 IPR006171 TOPRIM domain AM354_RS00350 4a17946e40dadec6652de4408ab27977 641 Pfam PF01751 Toprim domain 3 135 6.2E-18 T 29-03-2018 IPR006171 TOPRIM domain AM354_RS00350 4a17946e40dadec6652de4408ab27977 641 Gene3D G3DSA:2.70.20.10 363 478 9.2E-22 T 29-03-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 AM354_RS00350 4a17946e40dadec6652de4408ab27977 641 Hamap MF_00953 DNA topoisomerase 3 [topB]. 1 640 66.58 T 29-03-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 AM354_RS00350 4a17946e40dadec6652de4408ab27977 641 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 323 332 3.8E-25 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AM354_RS00350 4a17946e40dadec6652de4408ab27977 641 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 193 211 3.8E-25 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AM354_RS00350 4a17946e40dadec6652de4408ab27977 641 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 98 111 3.8E-25 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AM354_RS00350 4a17946e40dadec6652de4408ab27977 641 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 521 535 3.8E-25 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AM354_RS00350 4a17946e40dadec6652de4408ab27977 641 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 402 418 3.8E-25 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AM354_RS00350 4a17946e40dadec6652de4408ab27977 641 SMART SM00437 280 558 2.2E-103 T 29-03-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 AM354_RS08430 82d0aa914a768b7eb02ea14af35bd891 387 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 10 359 5.7E-114 T 29-03-2018 IPR017439 Amidohydrolase GO:0016787 AM354_RS08430 82d0aa914a768b7eb02ea14af35bd891 387 SUPERFAMILY SSF53187 3 190 1.83E-81 T 29-03-2018 AM354_RS08430 82d0aa914a768b7eb02ea14af35bd891 387 SUPERFAMILY SSF53187 291 374 1.83E-81 T 29-03-2018 AM354_RS08430 82d0aa914a768b7eb02ea14af35bd891 387 PIRSF PIRSF005962 1 376 1.2E-117 T 29-03-2018 IPR017439 Amidohydrolase GO:0016787 AM354_RS08430 82d0aa914a768b7eb02ea14af35bd891 387 Pfam PF07687 Peptidase dimerisation domain 178 273 3.1E-10 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain AM354_RS08430 82d0aa914a768b7eb02ea14af35bd891 387 SUPERFAMILY SSF55031 176 288 4.84E-29 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain AM354_RS08430 82d0aa914a768b7eb02ea14af35bd891 387 Pfam PF01546 Peptidase family M20/M25/M40 66 369 2.8E-31 T 29-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AM354_RS08430 82d0aa914a768b7eb02ea14af35bd891 387 Gene3D G3DSA:3.40.630.10 2 215 1.5E-49 T 29-03-2018 AM354_RS08430 82d0aa914a768b7eb02ea14af35bd891 387 Gene3D G3DSA:3.40.630.10 243 384 2.6E-21 T 29-03-2018 AM354_RS24815 5310003f569f5f710e3221aaaafa31f3 461 Gene3D G3DSA:3.30.1540.10 93 182 3.4E-8 T 29-03-2018 AM354_RS24815 5310003f569f5f710e3221aaaafa31f3 461 SUPERFAMILY SSF89796 30 195 2.35E-20 T 29-03-2018 IPR023606 CoA-transferase family III domain AM354_RS24815 5310003f569f5f710e3221aaaafa31f3 461 SUPERFAMILY SSF89796 201 399 2.09E-53 T 29-03-2018 IPR023606 CoA-transferase family III domain AM354_RS24815 5310003f569f5f710e3221aaaafa31f3 461 Gene3D G3DSA:3.40.50.10540 197 460 1.5E-63 T 29-03-2018 IPR023606 CoA-transferase family III domain AM354_RS24815 5310003f569f5f710e3221aaaafa31f3 461 Pfam PF02515 CoA-transferase family III 203 399 2.2E-44 T 29-03-2018 IPR003673 CoA-transferase family III GO:0003824 AM354_RS20705 949ff1fec4406ab36db3da002ff1dd2f 357 Gene3D G3DSA:2.40.50.100 79 171 2.7E-11 T 29-03-2018 AM354_RS20705 949ff1fec4406ab36db3da002ff1dd2f 357 Gene3D G3DSA:2.40.50.100 20 78 0.03 T 29-03-2018 AM354_RS20705 949ff1fec4406ab36db3da002ff1dd2f 357 SUPERFAMILY SSF111369 51 266 4.58E-40 T 29-03-2018 AM354_RS20705 949ff1fec4406ab36db3da002ff1dd2f 357 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 59 261 2.4E-27 T 29-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AM354_RS20705 949ff1fec4406ab36db3da002ff1dd2f 357 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 36 347 8.5E-72 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AM354_RS20705 949ff1fec4406ab36db3da002ff1dd2f 357 Gene3D G3DSA:2.40.50.100 172 334 0.13 T 29-03-2018 AM354_RS03985 e268517e0ed5144e502bd25996678baa 533 Pfam PF05136 Phage portal protein, lambda family 30 399 2.9E-93 T 29-03-2018 IPR006429 Phage portal protein, lambda family GO:0005198|GO:0019068 AM354_RS03985 e268517e0ed5144e502bd25996678baa 533 TIGRFAM TIGR01539 portal_lambda: phage portal protein, lambda family 28 509 9.7E-146 T 29-03-2018 IPR006429 Phage portal protein, lambda family GO:0005198|GO:0019068 AM354_RS23740 6ef2648b0e8af53bdbb60f4f34ba1593 62 ProDom PD057609 DNA POLYMERASE THETA SUBUNIT TRANSFERASE III NUCLEOTIDYLTRANSFERASE III DNA-DIRECTED REPLICATION 5 60 1.0E-5 T 29-03-2018 IPR009052 DNA polymerase III-theta, bacterial GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS23740 6ef2648b0e8af53bdbb60f4f34ba1593 62 SUPERFAMILY SSF46575 3 60 1.96E-18 T 29-03-2018 AM354_RS23740 6ef2648b0e8af53bdbb60f4f34ba1593 62 Gene3D G3DSA:1.20.58.250 4 62 4.9E-19 T 29-03-2018 IPR009052 DNA polymerase III-theta, bacterial GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS23740 6ef2648b0e8af53bdbb60f4f34ba1593 62 Pfam PF06440 DNA polymerase III, theta subunit 5 61 2.4E-13 T 29-03-2018 IPR009052 DNA polymerase III-theta, bacterial GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS19225 6fac5901167d53174f7a4cd948dc51f8 250 Gene3D G3DSA:3.30.2010.10 59 148 1.4E-19 T 29-03-2018 AM354_RS19225 6fac5901167d53174f7a4cd948dc51f8 250 Pfam PF01435 Peptidase family M48 71 245 4.9E-26 T 29-03-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AM354_RS18070 e9215200a976b3c1b75d2bb5f04bb14a 438 PIRSF PIRSF005962 1 433 1.8E-119 T 29-03-2018 IPR017439 Amidohydrolase GO:0016787 AM354_RS18070 e9215200a976b3c1b75d2bb5f04bb14a 438 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 18 420 2.7E-110 T 29-03-2018 IPR017439 Amidohydrolase GO:0016787 AM354_RS18070 e9215200a976b3c1b75d2bb5f04bb14a 438 Gene3D G3DSA:3.40.630.10 1 312 3.9E-52 T 29-03-2018 AM354_RS18070 e9215200a976b3c1b75d2bb5f04bb14a 438 SUPERFAMILY SSF53187 95 243 1.29E-62 T 29-03-2018 AM354_RS18070 e9215200a976b3c1b75d2bb5f04bb14a 438 SUPERFAMILY SSF53187 9 55 1.29E-62 T 29-03-2018 AM354_RS18070 e9215200a976b3c1b75d2bb5f04bb14a 438 SUPERFAMILY SSF53187 342 431 1.29E-62 T 29-03-2018 AM354_RS18070 e9215200a976b3c1b75d2bb5f04bb14a 438 Pfam PF07687 Peptidase dimerisation domain 233 316 6.5E-11 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain AM354_RS18070 e9215200a976b3c1b75d2bb5f04bb14a 438 Pfam PF01546 Peptidase family M20/M25/M40 115 429 2.8E-27 T 29-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AM354_RS18070 e9215200a976b3c1b75d2bb5f04bb14a 438 SUPERFAMILY SSF55031 229 336 1.31E-23 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain AM354_RS18070 e9215200a976b3c1b75d2bb5f04bb14a 438 Gene3D G3DSA:3.40.630.10 313 434 4.5E-11 T 29-03-2018 AM354_RS06425 54f35f2c73363f3bb570ca403591d9ef 565 Gene3D G3DSA:3.40.50.720 269 564 1.8E-105 T 29-03-2018 AM354_RS06425 54f35f2c73363f3bb570ca403591d9ef 565 SMART SM00919 271 531 1.9E-133 T 29-03-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 AM354_RS06425 54f35f2c73363f3bb570ca403591d9ef 565 PRINTS PR00072 Malic enzyme signature 408 424 1.0E-72 T 29-03-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 AM354_RS06425 54f35f2c73363f3bb570ca403591d9ef 565 PRINTS PR00072 Malic enzyme signature 87 111 1.0E-72 T 29-03-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 AM354_RS06425 54f35f2c73363f3bb570ca403591d9ef 565 PRINTS PR00072 Malic enzyme signature 242 260 1.0E-72 T 29-03-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 AM354_RS06425 54f35f2c73363f3bb570ca403591d9ef 565 PRINTS PR00072 Malic enzyme signature 147 176 1.0E-72 T 29-03-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 AM354_RS06425 54f35f2c73363f3bb570ca403591d9ef 565 PRINTS PR00072 Malic enzyme signature 183 205 1.0E-72 T 29-03-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 AM354_RS06425 54f35f2c73363f3bb570ca403591d9ef 565 PRINTS PR00072 Malic enzyme signature 267 283 1.0E-72 T 29-03-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 AM354_RS06425 54f35f2c73363f3bb570ca403591d9ef 565 PRINTS PR00072 Malic enzyme signature 298 314 1.0E-72 T 29-03-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 AM354_RS06425 54f35f2c73363f3bb570ca403591d9ef 565 SUPERFAMILY SSF51735 271 562 3.4E-94 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS06425 54f35f2c73363f3bb570ca403591d9ef 565 Pfam PF03949 Malic enzyme, NAD binding domain 271 530 1.2E-101 T 29-03-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 AM354_RS06425 54f35f2c73363f3bb570ca403591d9ef 565 PIRSF PIRSF000106 3 563 4.8E-228 T 29-03-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 AM354_RS06425 54f35f2c73363f3bb570ca403591d9ef 565 Hamap MF_01619 NAD-dependent malic enzyme [maeA]. 4 565 71.744 T 29-03-2018 IPR023667 NAD-dependent malic enzyme, proteobacteria GO:0004471|GO:0055114 KEGG: 00620+1.1.1.38 AM354_RS06425 54f35f2c73363f3bb570ca403591d9ef 565 ProSitePatterns PS00331 Malic enzymes signature. 267 283 - T 29-03-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 AM354_RS06425 54f35f2c73363f3bb570ca403591d9ef 565 SMART SM01274 81 261 6.8E-109 T 29-03-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AM354_RS06425 54f35f2c73363f3bb570ca403591d9ef 565 Pfam PF00390 Malic enzyme, N-terminal domain 81 261 1.6E-78 T 29-03-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AM354_RS06425 54f35f2c73363f3bb570ca403591d9ef 565 SUPERFAMILY SSF53223 6 270 7.91E-112 T 29-03-2018 AM354_RS06425 54f35f2c73363f3bb570ca403591d9ef 565 Gene3D G3DSA:3.40.50.10380 15 268 1.6E-116 T 29-03-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AM354_RS02940 ac4185f8448f2fe5d7558e363a7612e9 187 SUPERFAMILY SSF47413 7 69 3.22E-17 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS02940 ac4185f8448f2fe5d7558e363a7612e9 187 Pfam PF07883 Cupin domain 112 180 8.1E-14 T 29-03-2018 IPR013096 Cupin 2, conserved barrel AM354_RS02940 ac4185f8448f2fe5d7558e363a7612e9 187 Gene3D G3DSA:1.10.260.40 2 67 7.0E-16 T 29-03-2018 AM354_RS02940 ac4185f8448f2fe5d7558e363a7612e9 187 SMART SM00530 11 66 1.6E-14 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM354_RS02940 ac4185f8448f2fe5d7558e363a7612e9 187 Pfam PF01381 Helix-turn-helix 12 63 2.2E-15 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM354_RS02940 ac4185f8448f2fe5d7558e363a7612e9 187 Gene3D G3DSA:2.60.120.10 68 186 1.5E-17 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS02940 ac4185f8448f2fe5d7558e363a7612e9 187 SUPERFAMILY SSF51182 51 185 5.71E-28 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS06750 9c16395afd080a31629c2dbea9054e08 256 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 29-03-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AM354_RS06750 9c16395afd080a31629c2dbea9054e08 256 Gene3D G3DSA:3.40.50.1360 65 244 2.8E-34 T 29-03-2018 AM354_RS06750 9c16395afd080a31629c2dbea9054e08 256 SUPERFAMILY SSF46785 5 60 9.74E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS06750 9c16395afd080a31629c2dbea9054e08 256 Pfam PF08220 DeoR-like helix-turn-helix domain 6 60 1.3E-18 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS06750 9c16395afd080a31629c2dbea9054e08 256 Gene3D G3DSA:1.10.10.10 3 61 1.1E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS06750 9c16395afd080a31629c2dbea9054e08 256 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 5.1E-7 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS06750 9c16395afd080a31629c2dbea9054e08 256 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 5.1E-7 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS06750 9c16395afd080a31629c2dbea9054e08 256 SUPERFAMILY SSF100950 77 233 4.4E-27 T 29-03-2018 AM354_RS06750 9c16395afd080a31629c2dbea9054e08 256 Pfam PF00455 DeoR C terminal sensor domain 77 232 5.3E-50 T 29-03-2018 IPR014036 DeoR C-terminal sensor domain AM354_RS06750 9c16395afd080a31629c2dbea9054e08 256 SMART SM00420 6 58 2.9E-24 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM354_RS06750 9c16395afd080a31629c2dbea9054e08 256 SMART SM01134 73 233 6.1E-70 T 29-03-2018 AM354_RS00485 97c86a87c39fd97163efaaa6783585fb 486 SUPERFAMILY SSF56024 273 473 1.66E-48 T 29-03-2018 AM354_RS00485 97c86a87c39fd97163efaaa6783585fb 486 Hamap MF_00190 Cardiolipin synthase A [clsA]. 2 486 52.308 T 29-03-2018 IPR030840 Cardiolipin synthase A GO:0008808|GO:0016780|GO:0032049 AM354_RS00485 97c86a87c39fd97163efaaa6783585fb 486 SUPERFAMILY SSF56024 72 315 8.63E-48 T 29-03-2018 AM354_RS00485 97c86a87c39fd97163efaaa6783585fb 486 Pfam PF13396 Phospholipase_D-nuclease N-terminal 23 59 3.3E-7 T 29-03-2018 IPR027379 Cardiolipin synthase N-terminal AM354_RS00485 97c86a87c39fd97163efaaa6783585fb 486 Pfam PF13091 PLD-like domain 329 442 5.5E-23 T 29-03-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AM354_RS00485 97c86a87c39fd97163efaaa6783585fb 486 Pfam PF13091 PLD-like domain 134 242 2.7E-11 T 29-03-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AM354_RS00485 97c86a87c39fd97163efaaa6783585fb 486 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 6 486 1.4E-207 T 29-03-2018 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 AM354_RS00485 97c86a87c39fd97163efaaa6783585fb 486 Gene3D G3DSA:3.30.870.10 316 473 1.1E-25 T 29-03-2018 AM354_RS00485 97c86a87c39fd97163efaaa6783585fb 486 Gene3D G3DSA:3.30.870.10 98 288 4.4E-26 T 29-03-2018 AM354_RS00485 97c86a87c39fd97163efaaa6783585fb 486 SMART SM00155 399 426 4.2E-5 T 29-03-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AM354_RS00485 97c86a87c39fd97163efaaa6783585fb 486 SMART SM00155 219 246 5.1E-4 T 29-03-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AM354_RS15700 c14bfb98ff41b586162e4987d088079c 414 PRINTS PR00811 Bacterial general secretion pathway protein D signature 377 395 1.3E-14 T 29-03-2018 IPR001775 GspD/PilQ family AM354_RS15700 c14bfb98ff41b586162e4987d088079c 414 PRINTS PR00811 Bacterial general secretion pathway protein D signature 400 414 1.3E-14 T 29-03-2018 IPR001775 GspD/PilQ family AM354_RS15700 c14bfb98ff41b586162e4987d088079c 414 PRINTS PR00811 Bacterial general secretion pathway protein D signature 249 273 1.3E-14 T 29-03-2018 IPR001775 GspD/PilQ family AM354_RS15700 c14bfb98ff41b586162e4987d088079c 414 Pfam PF00263 Bacterial type II and III secretion system protein 253 413 1.2E-45 T 29-03-2018 IPR004846 Type II/III secretion system GO:0009306 AM354_RS15700 c14bfb98ff41b586162e4987d088079c 414 TIGRFAM TIGR02515 IV_pilus_PilQ: type IV pilus secretin PilQ 25 412 4.7E-121 T 29-03-2018 IPR013355 Type IV pilus secretin PilQ AM354_RS15700 c14bfb98ff41b586162e4987d088079c 414 Pfam PF03958 Bacterial type II/III secretion system short domain 120 183 6.2E-10 T 29-03-2018 IPR005644 NolW-like AM354_RS15700 c14bfb98ff41b586162e4987d088079c 414 PRINTS PR01032 Gene IV protein signature 393 414 6.9E-8 T 29-03-2018 AM354_RS15700 c14bfb98ff41b586162e4987d088079c 414 PRINTS PR01032 Gene IV protein signature 274 297 6.9E-8 T 29-03-2018 AM354_RS15700 c14bfb98ff41b586162e4987d088079c 414 PRINTS PR01032 Gene IV protein signature 233 256 6.9E-8 T 29-03-2018 AM354_RS15700 c14bfb98ff41b586162e4987d088079c 414 PRINTS PR01032 Gene IV protein signature 340 368 6.9E-8 T 29-03-2018 AM354_RS16060 6747b3f7225f19e4302af2034358a2c9 104 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 39 103 1.1E-22 T 29-03-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS16060 6747b3f7225f19e4302af2034358a2c9 104 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 3 103 1.5E-39 T 29-03-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS16060 6747b3f7225f19e4302af2034358a2c9 104 Gene3D G3DSA:2.30.30.30 2 93 1.7E-29 T 29-03-2018 IPR014722 Ribosomal protein L2 domain 2 AM354_RS16060 6747b3f7225f19e4302af2034358a2c9 104 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 3 97 20.029 T 29-03-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS16060 6747b3f7225f19e4302af2034358a2c9 104 SUPERFAMILY SSF50104 4 100 6.02E-33 T 29-03-2018 IPR008991 Translation protein SH3-like domain AM354_RS16060 6747b3f7225f19e4302af2034358a2c9 104 SMART SM00739 4 31 0.0011 T 29-03-2018 IPR005824 KOW AM354_RS16060 6747b3f7225f19e4302af2034358a2c9 104 ProSitePatterns PS01108 Ribosomal protein L24 signature. 8 25 - T 29-03-2018 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS18300 4666e8406e4a969725f398a86ef04a68 221 TIGRFAM TIGR03748 conj_PilL: integrating conjugative element protein PilL, PFGI-1 class 67 169 2.5E-40 T 29-03-2018 IPR022260 Integrating conjugative element protein PilL, PFGI-1 AM354_RS12985 9032627d55972ab3fc49565804962f24 245 Gene3D G3DSA:3.20.20.190 2 242 2.1E-60 T 29-03-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 AM354_RS12985 9032627d55972ab3fc49565804962f24 245 SUPERFAMILY SSF51695 6 240 3.66E-64 T 29-03-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 AM354_RS12985 9032627d55972ab3fc49565804962f24 245 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 13 239 5.2E-41 T 29-03-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 AM354_RS18165 0f097f5b9985bff2f8dc47afce946ed2 846 Pfam PF13953 PapC C-terminal domain 761 817 1.3E-14 T 29-03-2018 IPR025949 PapC-like, C-terminal domain AM354_RS18165 0f097f5b9985bff2f8dc47afce946ed2 846 SUPERFAMILY SSF141729 35 156 2.22E-31 T 29-03-2018 AM354_RS18165 0f097f5b9985bff2f8dc47afce946ed2 846 Pfam PF00577 Outer membrane usher protein 199 749 1.7E-185 T 29-03-2018 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 AM354_RS18165 0f097f5b9985bff2f8dc47afce946ed2 846 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 316 326 - T 29-03-2018 IPR018030 Fimbrial membrane usher, conserved site AM354_RS18165 0f097f5b9985bff2f8dc47afce946ed2 846 Pfam PF13954 PapC N-terminal domain 37 182 4.6E-38 T 29-03-2018 IPR025885 PapC, N-terminal domain GO:0005515 AM354_RS13615 be9dea69780a5e994bab435ce22d73c0 208 Pfam PF01810 LysE type translocator 16 196 5.1E-15 T 29-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AM354_RS11045 09ff38b4597ee266abde46282184126e 227 Pfam PF10144 Bacterial virulence factor haemolysin 1 159 1.2E-67 T 29-03-2018 IPR019305 Uncharacterised protein family Smp AM354_RS11045 09ff38b4597ee266abde46282184126e 227 Gene3D G3DSA:3.30.450.20 34 169 0.0014 T 29-03-2018 AM354_RS10585 86d70e531316cc76b6317cf421bf5612 453 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 4 448 34.258 T 29-03-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS10585 86d70e531316cc76b6317cf421bf5612 453 Gene3D G3DSA:3.40.1190.10 90 303 3.3E-60 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 AM354_RS10585 86d70e531316cc76b6317cf421bf5612 453 SUPERFAMILY SSF63418 1 97 2.75E-27 T 29-03-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 AM354_RS10585 86d70e531316cc76b6317cf421bf5612 453 Pfam PF01225 Mur ligase family, catalytic domain 24 90 1.5E-9 T 29-03-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 AM354_RS10585 86d70e531316cc76b6317cf421bf5612 453 SUPERFAMILY SSF53244 314 447 1.49E-37 T 29-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AM354_RS10585 86d70e531316cc76b6317cf421bf5612 453 Gene3D G3DSA:3.90.190.20 304 452 1.2E-37 T 29-03-2018 AM354_RS10585 86d70e531316cc76b6317cf421bf5612 453 Pfam PF02875 Mur ligase family, glutamate ligase domain 314 396 4.1E-14 T 29-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AM354_RS10585 86d70e531316cc76b6317cf421bf5612 453 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 29 447 7.6E-140 T 29-03-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM354_RS10585 86d70e531316cc76b6317cf421bf5612 453 SUPERFAMILY SSF53623 100 311 1.57E-58 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 AM354_RS10585 86d70e531316cc76b6317cf421bf5612 453 Pfam PF08245 Mur ligase middle domain 106 294 7.2E-48 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 AM354_RS10585 86d70e531316cc76b6317cf421bf5612 453 Gene3D G3DSA:3.40.1390.10 2 89 1.8E-27 T 29-03-2018 AM354_RS15905 be620f1613729a14518d71bc973ef0df 184 SUPERFAMILY SSF52218 6 176 1.72E-48 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS15905 be620f1613729a14518d71bc973ef0df 184 Hamap MF_01415 Glutathione-regulated potassium-efflux system ancillary protein KefG [kefG]. 2 183 50.274 T 29-03-2018 IPR023947 Glutathione-regulated potassium-efflux system ancillary protein KefG GO:0006813 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 AM354_RS15905 be620f1613729a14518d71bc973ef0df 184 Pfam PF02525 Flavodoxin-like fold 7 173 1.0E-41 T 29-03-2018 IPR003680 Flavodoxin-like fold AM354_RS15905 be620f1613729a14518d71bc973ef0df 184 Gene3D G3DSA:3.40.50.360 1 179 1.4E-33 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS17475 af8a6208bdad9fc3c82f26062fe8309b 415 Gene3D G3DSA:1.10.150.130 46 160 1.4E-6 T 29-03-2018 IPR023109 Integrase/recombinase, N-terminal AM354_RS17475 af8a6208bdad9fc3c82f26062fe8309b 415 SUPERFAMILY SSF56349 110 382 5.3E-22 T 29-03-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AM354_RS17475 af8a6208bdad9fc3c82f26062fe8309b 415 Gene3D G3DSA:1.10.443.10 176 390 2.0E-23 T 29-03-2018 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM354_RS17475 af8a6208bdad9fc3c82f26062fe8309b 415 Pfam PF00589 Phage integrase family 197 381 1.2E-9 T 29-03-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM354_RS09310 bf7144cd4adc7132d3b1858a4330e53e 229 SUPERFAMILY SSF46894 129 226 1.87E-32 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS09310 bf7144cd4adc7132d3b1858a4330e53e 229 SMART SM00448 3 116 3.2E-44 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS09310 bf7144cd4adc7132d3b1858a4330e53e 229 Gene3D G3DSA:3.40.50.2300 2 125 5.6E-36 T 29-03-2018 AM354_RS09310 bf7144cd4adc7132d3b1858a4330e53e 229 Gene3D G3DSA:1.10.10.10 126 229 3.4E-36 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS09310 bf7144cd4adc7132d3b1858a4330e53e 229 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 1 226 7.0E-115 T 29-03-2018 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 AM354_RS09310 bf7144cd4adc7132d3b1858a4330e53e 229 Pfam PF00072 Response regulator receiver domain 5 117 1.5E-27 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS09310 bf7144cd4adc7132d3b1858a4330e53e 229 SUPERFAMILY SSF52172 3 126 1.85E-42 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS09310 bf7144cd4adc7132d3b1858a4330e53e 229 SMART SM00862 150 225 2.7E-27 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS09310 bf7144cd4adc7132d3b1858a4330e53e 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 225 2.1E-28 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS02410 98f8a42ecd4d92a55c0223e4a1335058 412 Gene3D G3DSA:2.40.160.10 27 410 2.1E-21 T 29-03-2018 AM354_RS02410 98f8a42ecd4d92a55c0223e4a1335058 412 SUPERFAMILY SSF56935 50 360 8.79E-7 T 29-03-2018 AM354_RS11725 be30942517f9d0a727cddcd3f9595223 522 SUPERFAMILY SSF53850 21 517 6.15E-101 T 29-03-2018 AM354_RS11725 be30942517f9d0a727cddcd3f9595223 522 Gene3D G3DSA:3.10.105.10 293 493 5.4E-38 T 29-03-2018 AM354_RS11725 be30942517f9d0a727cddcd3f9595223 522 Gene3D G3DSA:3.90.76.10 36 191 2.6E-24 T 29-03-2018 AM354_RS11725 be30942517f9d0a727cddcd3f9595223 522 Gene3D G3DSA:3.40.190.10 192 292 1.5E-18 T 29-03-2018 AM354_RS11725 be30942517f9d0a727cddcd3f9595223 522 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 70 439 1.9E-71 T 29-03-2018 IPR000914 Solute-binding protein family 5 domain AM354_RS11725 be30942517f9d0a727cddcd3f9595223 522 PIRSF PIRSF002741 2 519 2.9E-67 T 29-03-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AM354_RS15205 a4da94ddb1679eecc590e156e5867c45 318 SUPERFAMILY SSF52540 91 299 1.14E-12 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS15205 a4da94ddb1679eecc590e156e5867c45 318 Pfam PF13401 AAA domain 107 219 1.3E-16 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS15205 a4da94ddb1679eecc590e156e5867c45 318 Gene3D G3DSA:1.10.260.40 2 94 4.5E-4 T 29-03-2018 AM354_RS15205 a4da94ddb1679eecc590e156e5867c45 318 Pfam PF09077 Mu B transposition protein, C terminal 236 313 8.1E-31 T 29-03-2018 IPR009084 B transposition protein, C-terminal GO:0003677|GO:0006313 AM354_RS15205 a4da94ddb1679eecc590e156e5867c45 318 Gene3D G3DSA:3.40.50.300 95 241 1.5E-8 T 29-03-2018 AM354_RS15205 a4da94ddb1679eecc590e156e5867c45 318 SUPERFAMILY SSF47681 235 315 6.02E-27 T 29-03-2018 IPR009084 B transposition protein, C-terminal GO:0003677|GO:0006313 AM354_RS15205 a4da94ddb1679eecc590e156e5867c45 318 Gene3D G3DSA:1.10.1180.10 242 314 1.3E-30 T 29-03-2018 AM354_RS06875 460c49c32b40f36b7b1622866df2f369 319 Gene3D G3DSA:1.20.970.10 4 100 8.0E-19 T 29-03-2018 AM354_RS06875 460c49c32b40f36b7b1622866df2f369 319 SUPERFAMILY SSF47648 7 72 9.16E-15 T 29-03-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM354_RS06875 460c49c32b40f36b7b1622866df2f369 319 Pfam PF02885 Glycosyl transferase family, helical bundle domain 5 68 2.0E-10 T 29-03-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM354_RS06875 460c49c32b40f36b7b1622866df2f369 319 Pfam PF00591 Glycosyl transferase family, a/b domain 94 318 7.1E-9 T 29-03-2018 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM354_RS06875 460c49c32b40f36b7b1622866df2f369 319 Gene3D G3DSA:3.40.1030.10 101 319 8.2E-41 T 29-03-2018 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM354_RS06875 460c49c32b40f36b7b1622866df2f369 319 SUPERFAMILY SSF52418 75 318 3.01E-47 T 29-03-2018 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM354_RS21720 e064d6e39c9a2a2d0107e6747be260a9 263 TIGRFAM TIGR00694 thiM: hydroxyethylthiazole kinase 17 261 1.2E-84 T 29-03-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AM354_RS21720 e064d6e39c9a2a2d0107e6747be260a9 263 Gene3D G3DSA:3.40.1190.20 7 263 1.5E-51 T 29-03-2018 IPR029056 Ribokinase-like AM354_RS21720 e064d6e39c9a2a2d0107e6747be260a9 263 Pfam PF02110 Hydroxyethylthiazole kinase family 17 260 1.6E-87 T 29-03-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AM354_RS21720 e064d6e39c9a2a2d0107e6747be260a9 263 PIRSF PIRSF000513 11 263 4.3E-94 T 29-03-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AM354_RS21720 e064d6e39c9a2a2d0107e6747be260a9 263 Hamap MF_00228 Hydroxyethylthiazole kinase [thiM]. 19 263 30.052 T 29-03-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AM354_RS21720 e064d6e39c9a2a2d0107e6747be260a9 263 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 25 32 1.2E-40 T 29-03-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AM354_RS21720 e064d6e39c9a2a2d0107e6747be260a9 263 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 95 112 1.2E-40 T 29-03-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AM354_RS21720 e064d6e39c9a2a2d0107e6747be260a9 263 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 38 59 1.2E-40 T 29-03-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AM354_RS21720 e064d6e39c9a2a2d0107e6747be260a9 263 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 169 186 1.2E-40 T 29-03-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AM354_RS21720 e064d6e39c9a2a2d0107e6747be260a9 263 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 125 139 1.2E-40 T 29-03-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AM354_RS21720 e064d6e39c9a2a2d0107e6747be260a9 263 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 69 77 1.2E-40 T 29-03-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AM354_RS21720 e064d6e39c9a2a2d0107e6747be260a9 263 SUPERFAMILY SSF53613 10 262 1.25E-59 T 29-03-2018 IPR029056 Ribokinase-like AM354_RS05605 0b31b81ff52d4e0c4107e063731f78d7 261 Hamap MF_02057 tRNA 5-carboxymethoxyuridine methyltransferase [cmoM]. 2 255 41.771 T 29-03-2018 IPR033664 tRNA 5-carboxymethoxyuridine methyltransferase GO:0008168 AM354_RS05605 0b31b81ff52d4e0c4107e063731f78d7 261 SUPERFAMILY SSF53335 4 255 2.3E-38 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS05605 0b31b81ff52d4e0c4107e063731f78d7 261 Gene3D G3DSA:3.40.50.150 8 261 2.7E-52 T 29-03-2018 AM354_RS05605 0b31b81ff52d4e0c4107e063731f78d7 261 Pfam PF13847 Methyltransferase domain 44 149 1.9E-19 T 29-03-2018 IPR025714 Methyltransferase domain AM354_RS18945 889e24f9b290bf222130442f5a0100be 254 Gene3D G3DSA:1.20.120.530 79 245 5.7E-23 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM354_RS18945 889e24f9b290bf222130442f5a0100be 254 Pfam PF07729 FCD domain 99 226 2.7E-18 T 29-03-2018 IPR011711 GntR, C-terminal AM354_RS18945 889e24f9b290bf222130442f5a0100be 254 SUPERFAMILY SSF48008 95 235 2.25E-21 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM354_RS18945 889e24f9b290bf222130442f5a0100be 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 2.9E-11 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS18945 889e24f9b290bf222130442f5a0100be 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 2.9E-11 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS18945 889e24f9b290bf222130442f5a0100be 254 SMART SM00345 15 74 2.3E-29 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS18945 889e24f9b290bf222130442f5a0100be 254 Gene3D G3DSA:1.10.10.10 2 76 4.2E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS18945 889e24f9b290bf222130442f5a0100be 254 SMART SM00895 99 227 7.4E-19 T 29-03-2018 IPR011711 GntR, C-terminal AM354_RS18945 889e24f9b290bf222130442f5a0100be 254 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 74 2.5E-25 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS18945 889e24f9b290bf222130442f5a0100be 254 SUPERFAMILY SSF46785 6 76 1.92E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS24215 c6876ff6bb706a4587c659845722e951 123 Gene3D G3DSA:1.20.120.580 60 122 7.2E-17 T 29-03-2018 IPR008201 Protein of unknown function DUF86 AM354_RS24215 c6876ff6bb706a4587c659845722e951 123 Pfam PF01934 Protein of unknown function DUF86 13 108 8.4E-24 T 29-03-2018 IPR008201 Protein of unknown function DUF86 AM354_RS24215 c6876ff6bb706a4587c659845722e951 123 Gene3D G3DSA:1.20.120.330 1 59 0.0032 T 29-03-2018 AM354_RS10315 820119e9bacb1628a8dc4a29421c0b47 302 SUPERFAMILY SSF52402 6 209 5.18E-75 T 29-03-2018 AM354_RS10315 820119e9bacb1628a8dc4a29421c0b47 302 PIRSF PIRSF002936 1 302 4.0E-156 T 29-03-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 AM354_RS10315 820119e9bacb1628a8dc4a29421c0b47 302 Hamap MF_00064 Sulfate adenylyltransferase subunit 2 [cysD]. 4 302 59.065 T 29-03-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 AM354_RS10315 820119e9bacb1628a8dc4a29421c0b47 302 Gene3D G3DSA:3.40.50.620 3 300 1.6E-41 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS10315 820119e9bacb1628a8dc4a29421c0b47 302 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 9 302 2.7E-167 T 29-03-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 AM354_RS10315 820119e9bacb1628a8dc4a29421c0b47 302 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 29 257 1.4E-65 T 29-03-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 Reactome: R-HSA-196843 AM354_RS13660 7f58d2f8cda814d7b8ccd364b86d73f8 211 TIGRFAM TIGR01583 formate-DH-gamm: formate dehydrogenase, gamma subunit 7 204 2.4E-67 T 29-03-2018 IPR006471 Formate dehydrogenase, gamma subunit GO:0008863|GO:0009326|GO:0016021|GO:0045333 AM354_RS13660 7f58d2f8cda814d7b8ccd364b86d73f8 211 SUPERFAMILY SSF81342 4 208 1.73E-55 T 29-03-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 AM354_RS13660 7f58d2f8cda814d7b8ccd364b86d73f8 211 Pfam PF01292 Prokaryotic cytochrome b561 9 184 5.8E-22 T 29-03-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 AM354_RS13660 7f58d2f8cda814d7b8ccd364b86d73f8 211 Gene3D G3DSA:1.20.950.20 1 211 3.9E-55 T 29-03-2018 AM354_RS01270 33200ef4bd4a2d5666c9566b141f7b55 235 SUPERFAMILY SSF53187 134 215 5.62E-32 T 29-03-2018 AM354_RS01270 33200ef4bd4a2d5666c9566b141f7b55 235 SUPERFAMILY SSF53187 18 107 5.62E-32 T 29-03-2018 AM354_RS01270 33200ef4bd4a2d5666c9566b141f7b55 235 Pfam PF00246 Zinc carboxypeptidase 43 157 4.6E-12 T 29-03-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 AM354_RS01270 33200ef4bd4a2d5666c9566b141f7b55 235 Gene3D G3DSA:3.40.630.10 34 233 1.8E-25 T 29-03-2018 AM354_RS10850 7268149a240fb83f81b9b470c0cdddcc 169 Pfam PF01252 Signal peptidase (SPase) II 16 155 3.3E-37 T 29-03-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 AM354_RS10850 7268149a240fb83f81b9b470c0cdddcc 169 TIGRFAM TIGR00077 lspA: signal peptidase II 1 162 1.5E-54 T 29-03-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 AM354_RS10850 7268149a240fb83f81b9b470c0cdddcc 169 ProSitePatterns PS00855 Signal peptidases II signature. 104 116 - T 29-03-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 AM354_RS10850 7268149a240fb83f81b9b470c0cdddcc 169 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 101 116 5.0E-18 T 29-03-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 AM354_RS10850 7268149a240fb83f81b9b470c0cdddcc 169 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 137 153 5.0E-18 T 29-03-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 AM354_RS10850 7268149a240fb83f81b9b470c0cdddcc 169 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 53 61 5.0E-18 T 29-03-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 AM354_RS10850 7268149a240fb83f81b9b470c0cdddcc 169 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 7 162 17.043 T 29-03-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 AM354_RS11075 7defd6c42a0c16d79e0a8da3962e0513 260 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 129 139 - T 29-03-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 AM354_RS11075 7defd6c42a0c16d79e0a8da3962e0513 260 Pfam PF01026 TatD related DNase 6 256 2.2E-67 T 29-03-2018 IPR001130 TatD family GO:0016788 AM354_RS11075 7defd6c42a0c16d79e0a8da3962e0513 260 SUPERFAMILY SSF51556 5 257 2.62E-76 T 29-03-2018 IPR032466 Metal-dependent hydrolase AM354_RS11075 7defd6c42a0c16d79e0a8da3962e0513 260 PIRSF PIRSF005902 1 260 4.6E-67 T 29-03-2018 IPR001130 TatD family GO:0016788 AM354_RS11075 7defd6c42a0c16d79e0a8da3962e0513 260 Gene3D G3DSA:3.20.20.140 3 260 8.2E-75 T 29-03-2018 AM354_RS10895 8013be8def5cd037105db3268d964cd7 435 Pfam PF07690 Major Facilitator Superfamily 41 384 4.1E-26 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS10895 8013be8def5cd037105db3268d964cd7 435 Gene3D G3DSA:1.20.1250.20 238 434 2.7E-21 T 29-03-2018 AM354_RS10895 8013be8def5cd037105db3268d964cd7 435 Gene3D G3DSA:1.20.1250.20 15 229 2.6E-23 T 29-03-2018 AM354_RS10895 8013be8def5cd037105db3268d964cd7 435 SUPERFAMILY SSF103473 5 419 1.7E-61 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS10470 2dc8e809eaaeede7bcdbd31315b50236 198 SMART SM00644 16 166 1.5E-59 T 29-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 AM354_RS10470 2dc8e809eaaeede7bcdbd31315b50236 198 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 26 167 6.2E-28 T 29-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 AM354_RS10470 2dc8e809eaaeede7bcdbd31315b50236 198 Gene3D G3DSA:3.40.80.10 1 186 1.4E-52 T 29-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 AM354_RS10470 2dc8e809eaaeede7bcdbd31315b50236 198 SUPERFAMILY SSF55846 2 179 5.1E-69 T 29-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 AM354_RS14645 8d71914fd37f843e98b7ed35cf721d35 457 PRINTS PR00149 Fumarate lyase superfamily signature 103 121 5.1E-29 T 29-03-2018 IPR000362 Fumarate lyase family AM354_RS14645 8d71914fd37f843e98b7ed35cf721d35 457 PRINTS PR00149 Fumarate lyase superfamily signature 148 166 5.1E-29 T 29-03-2018 IPR000362 Fumarate lyase family AM354_RS14645 8d71914fd37f843e98b7ed35cf721d35 457 PRINTS PR00149 Fumarate lyase superfamily signature 232 259 5.1E-29 T 29-03-2018 IPR000362 Fumarate lyase family AM354_RS14645 8d71914fd37f843e98b7ed35cf721d35 457 PRINTS PR00149 Fumarate lyase superfamily signature 276 292 5.1E-29 T 29-03-2018 IPR000362 Fumarate lyase family AM354_RS14645 8d71914fd37f843e98b7ed35cf721d35 457 Gene3D G3DSA:1.10.40.30 376 433 2.8E-25 T 29-03-2018 AM354_RS14645 8d71914fd37f843e98b7ed35cf721d35 457 SUPERFAMILY SSF48557 3 456 7.23E-144 T 29-03-2018 IPR008948 L-Aspartase-like GO:0003824 AM354_RS14645 8d71914fd37f843e98b7ed35cf721d35 457 Gene3D G3DSA:1.10.275.10 2 107 8.8E-33 T 29-03-2018 IPR024083 Fumarase/histidase, N-terminal AM354_RS14645 8d71914fd37f843e98b7ed35cf721d35 457 Pfam PF14698 Argininosuccinate lyase C-terminal 364 431 2.8E-23 T 29-03-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AM354_RS14645 8d71914fd37f843e98b7ed35cf721d35 457 Gene3D G3DSA:1.20.200.10 108 375 2.4E-95 T 29-03-2018 AM354_RS14645 8d71914fd37f843e98b7ed35cf721d35 457 Hamap MF_00006 Argininosuccinate lyase [argH]. 2 454 41.285 T 29-03-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AM354_RS14645 8d71914fd37f843e98b7ed35cf721d35 457 ProSitePatterns PS00163 Fumarate lyases signature. 276 285 - T 29-03-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 AM354_RS14645 8d71914fd37f843e98b7ed35cf721d35 457 Pfam PF00206 Lyase 6 301 4.2E-98 T 29-03-2018 IPR022761 Fumarate lyase, N-terminal AM354_RS14645 8d71914fd37f843e98b7ed35cf721d35 457 PRINTS PR00145 Argininosuccinate lyase family signature 194 210 1.1E-69 T 29-03-2018 AM354_RS14645 8d71914fd37f843e98b7ed35cf721d35 457 PRINTS PR00145 Argininosuccinate lyase family signature 143 163 1.1E-69 T 29-03-2018 AM354_RS14645 8d71914fd37f843e98b7ed35cf721d35 457 PRINTS PR00145 Argininosuccinate lyase family signature 232 256 1.1E-69 T 29-03-2018 AM354_RS14645 8d71914fd37f843e98b7ed35cf721d35 457 PRINTS PR00145 Argininosuccinate lyase family signature 102 124 1.1E-69 T 29-03-2018 AM354_RS14645 8d71914fd37f843e98b7ed35cf721d35 457 PRINTS PR00145 Argininosuccinate lyase family signature 311 330 1.1E-69 T 29-03-2018 AM354_RS14645 8d71914fd37f843e98b7ed35cf721d35 457 PRINTS PR00145 Argininosuccinate lyase family signature 276 292 1.1E-69 T 29-03-2018 AM354_RS14645 8d71914fd37f843e98b7ed35cf721d35 457 TIGRFAM TIGR00838 argH: argininosuccinate lyase 3 456 2.3E-212 T 29-03-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AM354_RS11200 7e6b26c6b194cd61088dbf8a9f1e045d 281 Gene3D G3DSA:3.90.850.10 19 281 2.5E-82 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AM354_RS11200 7e6b26c6b194cd61088dbf8a9f1e045d 281 SUPERFAMILY SSF56529 62 279 9.03E-81 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AM354_RS11200 7e6b26c6b194cd61088dbf8a9f1e045d 281 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 72 277 7.8E-68 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AM354_RS07105 cf4a3cc7634432f66f306c17cc82008d 405 SUPERFAMILY SSF51905 13 182 5.72E-55 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS07105 cf4a3cc7634432f66f306c17cc82008d 405 SUPERFAMILY SSF51905 274 357 5.72E-55 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS07105 cf4a3cc7634432f66f306c17cc82008d 405 Pfam PF01494 FAD binding domain 11 352 2.0E-52 T 29-03-2018 IPR002938 FAD-binding domain GO:0071949 AM354_RS07105 cf4a3cc7634432f66f306c17cc82008d 405 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 287 302 2.8E-22 T 29-03-2018 AM354_RS07105 cf4a3cc7634432f66f306c17cc82008d 405 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 161 176 2.8E-22 T 29-03-2018 AM354_RS07105 cf4a3cc7634432f66f306c17cc82008d 405 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 302 318 2.8E-22 T 29-03-2018 AM354_RS07105 cf4a3cc7634432f66f306c17cc82008d 405 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 12 34 2.8E-22 T 29-03-2018 AM354_RS07105 cf4a3cc7634432f66f306c17cc82008d 405 Gene3D G3DSA:3.50.50.60 11 359 1.8E-44 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS17825 07df82909e0e02c02f5e32332605abea 461 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 13 458 3.4E-107 T 29-03-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 AM354_RS17825 07df82909e0e02c02f5e32332605abea 461 Gene3D G3DSA:1.20.1600.10 19 461 7.9E-92 T 29-03-2018 AM354_RS17825 07df82909e0e02c02f5e32332605abea 461 SUPERFAMILY SSF56954 2 460 1.06E-101 T 29-03-2018 AM354_RS17825 07df82909e0e02c02f5e32332605abea 461 Pfam PF02321 Outer membrane efflux protein 275 456 5.5E-28 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 AM354_RS17825 07df82909e0e02c02f5e32332605abea 461 Pfam PF02321 Outer membrane efflux protein 66 248 1.6E-20 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 AM354_RS02675 2c5c4e6dc0de03ee1ba6fee25bc74073 318 Pfam PF04773 FecR protein 114 205 2.9E-15 T 29-03-2018 IPR006860 FecR protein AM354_RS02675 2c5c4e6dc0de03ee1ba6fee25bc74073 318 Pfam PF16220 Domain of unknown function (DUF4880) 16 56 5.5E-9 T 29-03-2018 IPR032623 FecR, N-terminal AM354_RS02675 2c5c4e6dc0de03ee1ba6fee25bc74073 318 PIRSF PIRSF018266 4 318 2.9E-85 T 29-03-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component AM354_RS26075 d1f101c524a15673af541e715f4ba61e 306 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 121 7.4E-24 T 29-03-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AM354_RS26075 d1f101c524a15673af541e715f4ba61e 306 SUPERFAMILY SSF51735 3 138 1.2E-41 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS26075 d1f101c524a15673af541e715f4ba61e 306 Gene3D G3DSA:3.40.50.720 1 129 1.1E-31 T 29-03-2018 AM354_RS26075 d1f101c524a15673af541e715f4ba61e 306 Gene3D G3DSA:3.30.360.10 130 304 1.5E-20 T 29-03-2018 AM354_RS26075 d1f101c524a15673af541e715f4ba61e 306 SUPERFAMILY SSF55347 123 264 5.89E-44 T 29-03-2018 AM354_RS07790 9c049298f55542ff81bc52af7e41bce3 49 Hamap MF_01484 Multidrug efflux pump accessory protein AcrZ [acrZ]. 1 47 19.024 T 29-03-2018 IPR019702 Multidrug efflux pump accessory protein AcrZ GO:0005886|GO:0006855|GO:0015238 AM354_RS07790 9c049298f55542ff81bc52af7e41bce3 49 Pfam PF10766 Multidrug efflux pump-associated protein AcrZ 1 47 4.5E-29 T 29-03-2018 IPR019702 Multidrug efflux pump accessory protein AcrZ GO:0005886|GO:0006855|GO:0015238 AM354_RS12140 c3788e8a9e850aef29529ca0d86e5917 87 SUPERFAMILY SSF159871 3 87 2.22E-27 T 29-03-2018 IPR010854 Domain of unknown function DUF1471 AM354_RS12140 c3788e8a9e850aef29529ca0d86e5917 87 Gene3D G3DSA:3.30.1660.10 22 87 4.6E-26 T 29-03-2018 IPR025543 Dodecin-like AM354_RS12140 c3788e8a9e850aef29529ca0d86e5917 87 Pfam PF07338 Protein of unknown function (DUF1471) 34 87 1.1E-22 T 29-03-2018 IPR010854 Domain of unknown function DUF1471 AM354_RS19775 e765b8d8c4b1f6c337427537b64b82b8 378 Gene3D G3DSA:1.20.1600.10 49 337 4.5E-27 T 29-03-2018 AM354_RS19775 e765b8d8c4b1f6c337427537b64b82b8 378 SUPERFAMILY SSF111369 43 231 5.36E-22 T 29-03-2018 AM354_RS19775 e765b8d8c4b1f6c337427537b64b82b8 378 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 29 375 4.9E-39 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AM354_RS19775 e765b8d8c4b1f6c337427537b64b82b8 378 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 51 254 6.4E-17 T 29-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AM354_RS04180 7819d61c21f0de4c204bcc49c0e2fbb6 208 Hamap MF_00695 High frequency lysogenization protein HflD [hflD]. 1 206 36.399 T 29-03-2018 IPR007451 Uncharacterised protein family UPF0274 AM354_RS04180 7819d61c21f0de4c204bcc49c0e2fbb6 208 Gene3D G3DSA:1.10.3890.10 4 206 7.1E-81 T 29-03-2018 IPR007451 Uncharacterised protein family UPF0274 AM354_RS04180 7819d61c21f0de4c204bcc49c0e2fbb6 208 SUPERFAMILY SSF101322 2 207 9.15E-81 T 29-03-2018 IPR007451 Uncharacterised protein family UPF0274 AM354_RS04180 7819d61c21f0de4c204bcc49c0e2fbb6 208 Pfam PF04356 Protein of unknown function (DUF489) 7 198 4.3E-78 T 29-03-2018 IPR007451 Uncharacterised protein family UPF0274 AM354_RS04180 7819d61c21f0de4c204bcc49c0e2fbb6 208 ProDom PD037115 UPF0274 YCFC HI0638 METABOLISM UNCHARACTERIZED VV1342 PURINE INVOLVED SO2634 HFLD 9 197 1.0E-81 T 29-03-2018 IPR007451 Uncharacterised protein family UPF0274 AM354_RS04750 129af2e02ded0b06b134d67622fc0ab3 116 SUPERFAMILY SSF54197 2 112 3.69E-36 T 29-03-2018 IPR011146 HIT-like domain GO:0003824 AM354_RS04750 129af2e02ded0b06b134d67622fc0ab3 116 Pfam PF01230 HIT domain 12 109 8.9E-31 T 29-03-2018 IPR001310 Histidine triad (HIT) protein AM354_RS04750 129af2e02ded0b06b134d67622fc0ab3 116 Gene3D G3DSA:3.30.428.10 1 109 3.1E-30 T 29-03-2018 IPR011146 HIT-like domain GO:0003824 AM354_RS04750 129af2e02ded0b06b134d67622fc0ab3 116 PRINTS PR00332 Histidine triad family signature 27 45 7.9E-20 T 29-03-2018 IPR001310 Histidine triad (HIT) protein AM354_RS04750 129af2e02ded0b06b134d67622fc0ab3 116 PRINTS PR00332 Histidine triad family signature 6 22 7.9E-20 T 29-03-2018 IPR001310 Histidine triad (HIT) protein AM354_RS04750 129af2e02ded0b06b134d67622fc0ab3 116 PRINTS PR00332 Histidine triad family signature 95 105 7.9E-20 T 29-03-2018 IPR001310 Histidine triad (HIT) protein AM354_RS04750 129af2e02ded0b06b134d67622fc0ab3 116 ProSitePatterns PS00892 HIT domain signature. 88 106 - T 29-03-2018 IPR019808 Histidine triad, conserved site AM354_RS14960 6eedbc840340bc7bbefaef057bdcb9c7 257 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 255 3.2E-42 T 29-03-2018 AM354_RS14960 6eedbc840340bc7bbefaef057bdcb9c7 257 Gene3D G3DSA:3.40.50.720 1 257 8.3E-50 T 29-03-2018 AM354_RS14960 6eedbc840340bc7bbefaef057bdcb9c7 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 2.0E-14 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS14960 6eedbc840340bc7bbefaef057bdcb9c7 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 2.0E-14 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS14960 6eedbc840340bc7bbefaef057bdcb9c7 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 2.0E-14 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS14960 6eedbc840340bc7bbefaef057bdcb9c7 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 88 99 2.0E-14 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS14960 6eedbc840340bc7bbefaef057bdcb9c7 257 SUPERFAMILY SSF51735 7 255 1.34E-50 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS14960 6eedbc840340bc7bbefaef057bdcb9c7 257 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 9 190 0.0036 T 29-03-2018 AM354_RS24950 c6543f6797b302d44b5495effde83b09 447 Pfam PF01024 Colicin pore forming domain 260 437 1.8E-33 T 29-03-2018 IPR000293 Channel forming colicin, C-terminal cytotoxic GO:0016021|GO:0019835|GO:0050829 AM354_RS24950 c6543f6797b302d44b5495effde83b09 447 ProDom PD002657 PLASMID COLICIN BACTERIOCIN TRANSMEMBRANE ANTIBIOTIC MEMBRANE ANTIMICROBIAL E1 IB 3D-STRUCTURE 256 434 1.0E-94 T 29-03-2018 IPR000293 Channel forming colicin, C-terminal cytotoxic GO:0016021|GO:0019835|GO:0050829 AM354_RS24950 c6543f6797b302d44b5495effde83b09 447 SUPERFAMILY SSF56837 153 446 5.1E-77 T 29-03-2018 AM354_RS24950 c6543f6797b302d44b5495effde83b09 447 Gene3D G3DSA:1.10.490.30 257 443 2.4E-47 T 29-03-2018 AM354_RS24950 c6543f6797b302d44b5495effde83b09 447 PRINTS PR00280 Channel forming colicin signature 377 390 1.9E-5 T 29-03-2018 IPR000293 Channel forming colicin, C-terminal cytotoxic GO:0016021|GO:0019835|GO:0050829 AM354_RS24950 c6543f6797b302d44b5495effde83b09 447 PRINTS PR00280 Channel forming colicin signature 300 315 1.9E-5 T 29-03-2018 IPR000293 Channel forming colicin, C-terminal cytotoxic GO:0016021|GO:0019835|GO:0050829 AM354_RS24950 c6543f6797b302d44b5495effde83b09 447 PRINTS PR00280 Channel forming colicin signature 319 335 1.9E-5 T 29-03-2018 IPR000293 Channel forming colicin, C-terminal cytotoxic GO:0016021|GO:0019835|GO:0050829 AM354_RS16265 4acf4c07731a3261bb65d650e57e60fd 604 SUPERFAMILY SSF52016 420 601 6.98E-58 T 29-03-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel AM354_RS16265 4acf4c07731a3261bb65d650e57e60fd 604 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 155 165 - T 29-03-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AM354_RS16265 4acf4c07731a3261bb65d650e57e60fd 604 SUPERFAMILY SSF143975 2 419 1.7E-143 T 29-03-2018 AM354_RS16265 4acf4c07731a3261bb65d650e57e60fd 604 Pfam PF00920 Dehydratase family 68 599 6.0E-158 T 29-03-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AM354_RS16265 4acf4c07731a3261bb65d650e57e60fd 604 TIGRFAM TIGR01196 edd: phosphogluconate dehydratase 4 603 0.0 T 29-03-2018 IPR004786 6-phosphogluconate dehydratase GO:0004456|GO:0009255 KEGG: 00030+4.2.1.12 AM354_RS16265 4acf4c07731a3261bb65d650e57e60fd 604 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 506 517 - T 29-03-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AM354_RS05480 12f507a8e86e3b69d252ce76c17f312f 186 Gene3D G3DSA:3.40.50.10610 12 185 2.1E-47 T 29-03-2018 IPR005586 ABC-type transport auxiliary lipoprotein component AM354_RS05480 12f507a8e86e3b69d252ce76c17f312f 186 SUPERFAMILY SSF159594 23 183 1.36E-30 T 29-03-2018 AM354_RS05480 12f507a8e86e3b69d252ce76c17f312f 186 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 25 180 2.0E-41 T 29-03-2018 IPR005586 ABC-type transport auxiliary lipoprotein component AM354_RS03330 efffda1e27ac80d810fae898c61f8785 114 Pfam PF00892 EamA-like transporter family 25 111 2.7E-9 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM354_RS03330 efffda1e27ac80d810fae898c61f8785 114 Hamap MF_01869 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE [arnE]. 2 114 31.617 T 29-03-2018 IPR022883 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase, subunit ArnE AM354_RS03330 efffda1e27ac80d810fae898c61f8785 114 SUPERFAMILY SSF103481 36 113 4.45E-13 T 29-03-2018 AM354_RS10280 0b1863375dc32cc3bf4beb1620d8cf60 106 Pfam PF04977 Septum formation initiator 11 89 3.7E-31 T 29-03-2018 IPR007060 Septum formation initiator FtsL/DivIC GO:0007049 AM354_RS10280 0b1863375dc32cc3bf4beb1620d8cf60 106 Hamap MF_00599 Cell division protein FtsB [ftsB]. 1 90 36.948 T 29-03-2018 IPR023081 Cell division protein FtsB AM354_RS02000 228dbb389da4961f913277ffceb439d2 74 Pfam PF03621 MbtH-like protein 6 56 7.8E-25 T 29-03-2018 IPR005153 MbtH-like protein AM354_RS02000 228dbb389da4961f913277ffceb439d2 74 SUPERFAMILY SSF160582 6 70 2.48E-27 T 29-03-2018 AM354_RS02000 228dbb389da4961f913277ffceb439d2 74 Gene3D G3DSA:3.90.820.10 6 72 3.1E-30 T 29-03-2018 AM354_RS02000 228dbb389da4961f913277ffceb439d2 74 SMART SM00923 7 57 1.8E-26 T 29-03-2018 IPR005153 MbtH-like protein AM354_RS00940 8363ca358f803e555339ec4f227655f3 310 Gene3D G3DSA:3.40.50.2300 14 141 3.3E-26 T 29-03-2018 AM354_RS00940 8363ca358f803e555339ec4f227655f3 310 Pfam PF13407 Periplasmic binding protein domain 27 276 2.4E-48 T 29-03-2018 IPR025997 Periplasmic binding protein AM354_RS00940 8363ca358f803e555339ec4f227655f3 310 SUPERFAMILY SSF53822 26 302 2.17E-66 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS00940 8363ca358f803e555339ec4f227655f3 310 Gene3D G3DSA:3.40.50.2300 142 305 2.1E-28 T 29-03-2018 AM354_RS09770 04f08c171a631ed2f404f735719aa048 133 Pfam PF07417 Transcriptional regulator Crl 5 122 2.1E-55 T 29-03-2018 IPR009986 Sigma factor-binding protein Crl GO:0005737|GO:0045893 AM354_RS09770 04f08c171a631ed2f404f735719aa048 133 Hamap MF_01178 Sigma factor-binding protein Crl [crl]. 1 128 32.32 T 29-03-2018 IPR009986 Sigma factor-binding protein Crl GO:0005737|GO:0045893 AM354_RS21335 e09b7ff5fe9b74503e7751b319c5bd37 341 Gene3D G3DSA:3.10.170.10 1 174 4.0E-64 T 29-03-2018 AM354_RS21335 e09b7ff5fe9b74503e7751b319c5bd37 341 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 125 145 8.5E-29 T 29-03-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 AM354_RS21335 e09b7ff5fe9b74503e7751b319c5bd37 341 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 263 279 8.5E-29 T 29-03-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 AM354_RS21335 e09b7ff5fe9b74503e7751b319c5bd37 341 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 161 177 8.5E-29 T 29-03-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 AM354_RS21335 e09b7ff5fe9b74503e7751b319c5bd37 341 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 182 193 8.5E-29 T 29-03-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 AM354_RS21335 e09b7ff5fe9b74503e7751b319c5bd37 341 Pfam PF02868 Thermolysin metallopeptidase, alpha-helical domain 173 340 2.0E-50 T 29-03-2018 IPR001570 Peptidase M4, C-terminal GO:0004222 AM354_RS21335 e09b7ff5fe9b74503e7751b319c5bd37 341 Pfam PF01447 Thermolysin metallopeptidase, catalytic domain 62 170 3.5E-31 T 29-03-2018 IPR013856 Peptidase M4 domain GO:0004222 AM354_RS21335 e09b7ff5fe9b74503e7751b319c5bd37 341 Pfam PF16485 Protealysin propeptide 7 46 1.5E-18 T 29-03-2018 IPR032475 Protealysin, N-terminal propeptide AM354_RS21335 e09b7ff5fe9b74503e7751b319c5bd37 341 Gene3D G3DSA:1.10.390.10 175 341 1.2E-54 T 29-03-2018 AM354_RS21335 e09b7ff5fe9b74503e7751b319c5bd37 341 SUPERFAMILY SSF55486 62 340 9.89E-86 T 29-03-2018 AM354_RS01190 940398dcaa04fcb883bedebfccf1c911 549 PIRSF PIRSF002741 1 546 4.8E-95 T 29-03-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AM354_RS01190 940398dcaa04fcb883bedebfccf1c911 549 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 82 460 1.7E-85 T 29-03-2018 IPR000914 Solute-binding protein family 5 domain AM354_RS01190 940398dcaa04fcb883bedebfccf1c911 549 Gene3D G3DSA:3.90.76.10 48 212 5.7E-34 T 29-03-2018 AM354_RS01190 940398dcaa04fcb883bedebfccf1c911 549 Gene3D G3DSA:3.10.105.10 308 513 4.0E-54 T 29-03-2018 AM354_RS01190 940398dcaa04fcb883bedebfccf1c911 549 Gene3D G3DSA:3.40.190.10 213 307 2.9E-23 T 29-03-2018 AM354_RS01190 940398dcaa04fcb883bedebfccf1c911 549 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 87 109 - T 29-03-2018 IPR023765 Solute-binding protein family 5, conserved site AM354_RS01190 940398dcaa04fcb883bedebfccf1c911 549 SUPERFAMILY SSF53850 39 540 3.8E-134 T 29-03-2018 AM354_RS12845 0df8e82f800f51e8ef71dfb238589e16 177 ProSitePatterns PS00201 Flavodoxin signature. 5 21 - T 29-03-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 AM354_RS12845 0df8e82f800f51e8ef71dfb238589e16 177 Gene3D G3DSA:3.40.50.360 2 173 8.3E-21 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS12845 0df8e82f800f51e8ef71dfb238589e16 177 Pfam PF12724 Flavodoxin domain 4 151 1.6E-56 T 29-03-2018 IPR026816 Flavodoxin domain AM354_RS12845 0df8e82f800f51e8ef71dfb238589e16 177 SUPERFAMILY SSF52218 1 170 5.39E-33 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS02205 6dc6ec7702b83c0c3125840323b7357c 92 TIGRFAM TIGR03859 PQQ_PqqD: coenzyme PQQ biosynthesis protein PqqD 9 88 9.4E-35 T 29-03-2018 IPR022479 Coenzyme PQQ synthesis D, bacteria GO:0018189|GO:0048038 AM354_RS02205 6dc6ec7702b83c0c3125840323b7357c 92 Pfam PF05402 Coenzyme PQQ synthesis protein D (PqqD) 26 88 2.0E-13 T 29-03-2018 IPR008792 Coenzyme PQQ synthesis D AM354_RS02205 6dc6ec7702b83c0c3125840323b7357c 92 Hamap MF_00655 Coenzyme PQQ synthesis protein D [pqqD]. 3 90 24.996 T 29-03-2018 IPR022479 Coenzyme PQQ synthesis D, bacteria GO:0018189|GO:0048038 AM354_RS13845 e8a2f72d34975fe4465083b8224dec19 313 SUPERFAMILY SSF51735 1 311 1.37E-76 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS13845 e8a2f72d34975fe4465083b8224dec19 313 Gene3D G3DSA:3.30.1780.10 1 137 3.7E-32 T 29-03-2018 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 AM354_RS13845 e8a2f72d34975fe4465083b8224dec19 313 Gene3D G3DSA:3.40.50.720 138 297 1.8E-28 T 29-03-2018 AM354_RS13845 e8a2f72d34975fe4465083b8224dec19 313 PIRSF PIRSF001439 1 313 1.1E-56 T 29-03-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 AM354_RS13845 e8a2f72d34975fe4465083b8224dec19 313 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 8 309 6.4E-61 T 29-03-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 AM354_RS05350 52db9b8dfb8b832741fc446e004730e7 194 Gene3D G3DSA:2.60.40.1090 29 194 1.5E-25 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS05350 52db9b8dfb8b832741fc446e004730e7 194 Pfam PF00419 Fimbrial protein 31 193 6.5E-13 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS05350 52db9b8dfb8b832741fc446e004730e7 194 SUPERFAMILY SSF49401 31 193 3.88E-20 T 29-03-2018 IPR008966 Adhesion domain AM354_RS24990 fcce846bdaa3ec52f4c5075df682b34a 445 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 124 142 2.8E-26 T 29-03-2018 AM354_RS24990 fcce846bdaa3ec52f4c5075df682b34a 445 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 2.8E-26 T 29-03-2018 AM354_RS24990 fcce846bdaa3ec52f4c5075df682b34a 445 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 276 298 2.8E-26 T 29-03-2018 AM354_RS24990 fcce846bdaa3ec52f4c5075df682b34a 445 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 164 182 2.8E-26 T 29-03-2018 AM354_RS24990 fcce846bdaa3ec52f4c5075df682b34a 445 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 247 263 2.8E-26 T 29-03-2018 AM354_RS24990 fcce846bdaa3ec52f4c5075df682b34a 445 SUPERFAMILY SSF55424 328 441 2.23E-32 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AM354_RS24990 fcce846bdaa3ec52f4c5075df682b34a 445 Gene3D G3DSA:3.50.50.60 3 151 2.2E-18 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS24990 fcce846bdaa3ec52f4c5075df682b34a 445 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 303 1.8E-53 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS24990 fcce846bdaa3ec52f4c5075df682b34a 445 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 127 136 1.1E-48 T 29-03-2018 AM354_RS24990 fcce846bdaa3ec52f4c5075df682b34a 445 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 248 262 1.1E-48 T 29-03-2018 AM354_RS24990 fcce846bdaa3ec52f4c5075df682b34a 445 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 1.1E-48 T 29-03-2018 AM354_RS24990 fcce846bdaa3ec52f4c5075df682b34a 445 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 164 189 1.1E-48 T 29-03-2018 AM354_RS24990 fcce846bdaa3ec52f4c5075df682b34a 445 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 291 298 1.1E-48 T 29-03-2018 AM354_RS24990 fcce846bdaa3ec52f4c5075df682b34a 445 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 393 408 1.1E-48 T 29-03-2018 AM354_RS24990 fcce846bdaa3ec52f4c5075df682b34a 445 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 328 349 1.1E-48 T 29-03-2018 AM354_RS24990 fcce846bdaa3ec52f4c5075df682b34a 445 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 415 435 1.1E-48 T 29-03-2018 AM354_RS24990 fcce846bdaa3ec52f4c5075df682b34a 445 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 39 54 1.1E-48 T 29-03-2018 AM354_RS24990 fcce846bdaa3ec52f4c5075df682b34a 445 Gene3D G3DSA:3.30.390.30 331 444 3.1E-32 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AM354_RS24990 fcce846bdaa3ec52f4c5075df682b34a 445 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 332 438 3.3E-27 T 29-03-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AM354_RS24990 fcce846bdaa3ec52f4c5075df682b34a 445 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 40 50 - T 29-03-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 AM354_RS24990 fcce846bdaa3ec52f4c5075df682b34a 445 PIRSF PIRSF000350 1 441 1.3E-87 T 29-03-2018 AM354_RS24990 fcce846bdaa3ec52f4c5075df682b34a 445 SUPERFAMILY SSF51905 2 358 2.24E-48 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS24990 fcce846bdaa3ec52f4c5075df682b34a 445 Gene3D G3DSA:3.40.50.720 152 313 1.9E-33 T 29-03-2018 AM354_RS22705 423f70edbcd95d94c968b7580678202b 308 Pfam PF01226 Formate/nitrite transporter 43 279 6.7E-43 T 29-03-2018 IPR000292 Formate/nitrite transporter GO:0005215|GO:0006810|GO:0016020 AM354_RS22705 423f70edbcd95d94c968b7580678202b 308 Gene3D G3DSA:1.20.1080.10 34 295 9.0E-51 T 29-03-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 AM354_RS11290 01df06a5bcff0e39e0d52a22682cfffb 260 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 181 0.0011 T 29-03-2018 AM354_RS11290 01df06a5bcff0e39e0d52a22682cfffb 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 3.2E-33 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11290 01df06a5bcff0e39e0d52a22682cfffb 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 3.2E-33 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11290 01df06a5bcff0e39e0d52a22682cfffb 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 3.2E-33 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11290 01df06a5bcff0e39e0d52a22682cfffb 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 3.2E-33 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11290 01df06a5bcff0e39e0d52a22682cfffb 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 3.2E-33 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11290 01df06a5bcff0e39e0d52a22682cfffb 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 3.2E-33 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11290 01df06a5bcff0e39e0d52a22682cfffb 260 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 133 161 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM354_RS11290 01df06a5bcff0e39e0d52a22682cfffb 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 134 8.2E-5 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11290 01df06a5bcff0e39e0d52a22682cfffb 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 8.2E-5 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11290 01df06a5bcff0e39e0d52a22682cfffb 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 165 8.2E-5 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11290 01df06a5bcff0e39e0d52a22682cfffb 260 Gene3D G3DSA:3.40.50.720 2 256 5.0E-62 T 29-03-2018 AM354_RS11290 01df06a5bcff0e39e0d52a22682cfffb 260 SUPERFAMILY SSF51735 2 250 1.54E-68 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS11290 01df06a5bcff0e39e0d52a22682cfffb 260 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 248 6.5E-53 T 29-03-2018 AM354_RS24715 bac0b85422b1d0edecad284bda730dbd 688 SUPERFAMILY SSF53720 4 507 1.09E-79 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM354_RS24715 bac0b85422b1d0edecad284bda730dbd 688 Gene3D G3DSA:3.10.129.10 506 680 2.2E-37 T 29-03-2018 AM354_RS24715 bac0b85422b1d0edecad284bda730dbd 688 Pfam PF00171 Aldehyde dehydrogenase family 43 502 8.9E-61 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM354_RS24715 bac0b85422b1d0edecad284bda730dbd 688 TIGRFAM TIGR02278 PaaN-DH: phenylacetic acid degradation protein paaN 4 681 0.0 T 29-03-2018 IPR011966 Phenylacetic acid degradation protein PaaN KEGG: 00360+3.3.2.12+1.2.1.91 AM354_RS24715 bac0b85422b1d0edecad284bda730dbd 688 Gene3D G3DSA:3.40.605.10 1 266 8.3E-39 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM354_RS24715 bac0b85422b1d0edecad284bda730dbd 688 Gene3D G3DSA:3.40.309.10 267 491 1.3E-35 T 29-03-2018 AM354_RS24715 bac0b85422b1d0edecad284bda730dbd 688 Pfam PF01575 MaoC like domain 544 646 7.4E-29 T 29-03-2018 IPR002539 MaoC-like domain AM354_RS24715 bac0b85422b1d0edecad284bda730dbd 688 SUPERFAMILY SSF54637 532 682 1.91E-34 T 29-03-2018 IPR029069 HotDog domain AM354_RS05440 30aa36b4b2e5fcaeb6eec46dfaaa4bd4 168 Pfam PF03846 Cell division inhibitor SulA 7 120 1.5E-54 T 29-03-2018 IPR004596 Cell division suppressor protein, SulA GO:0009432|GO:0051782 AM354_RS05440 30aa36b4b2e5fcaeb6eec46dfaaa4bd4 168 SUPERFAMILY SSF52540 32 146 9.56E-34 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS05440 30aa36b4b2e5fcaeb6eec46dfaaa4bd4 168 Hamap MF_01179 Cell division inhibitor SulA [sulA]. 1 168 43.475 T 29-03-2018 IPR004596 Cell division suppressor protein, SulA GO:0009432|GO:0051782 AM354_RS05440 30aa36b4b2e5fcaeb6eec46dfaaa4bd4 168 PIRSF PIRSF003093 1 168 2.2E-87 T 29-03-2018 IPR004596 Cell division suppressor protein, SulA GO:0009432|GO:0051782 AM354_RS05440 30aa36b4b2e5fcaeb6eec46dfaaa4bd4 168 Gene3D G3DSA:3.40.50.300 32 147 6.9E-21 T 29-03-2018 AM354_RS05440 30aa36b4b2e5fcaeb6eec46dfaaa4bd4 168 TIGRFAM TIGR00623 sula: cell division inhibitor SulA 3 168 6.1E-89 T 29-03-2018 IPR004596 Cell division suppressor protein, SulA GO:0009432|GO:0051782 AM354_RS18895 07f07290b277cd6b2f81b0a6878e9fdf 231 Pfam PF04231 Endonuclease I 42 226 1.2E-43 T 29-03-2018 IPR007346 Endonuclease I GO:0004518 AM354_RS18895 07f07290b277cd6b2f81b0a6878e9fdf 231 SUPERFAMILY SSF54060 21 226 2.71E-87 T 29-03-2018 AM354_RS23270 a96f6a80bbbc0e5cbe8345e82dea9fef 398 TIGRFAM TIGR00200 cinA_nterm: competence/damage-inducible protein CinA N-terminal domain 1 397 1.8E-120 T 29-03-2018 IPR008135 Competence-induced protein CinA AM354_RS23270 a96f6a80bbbc0e5cbe8345e82dea9fef 398 SUPERFAMILY SSF53218 2 192 6.15E-35 T 29-03-2018 IPR001453 MoaB/Mog domain AM354_RS23270 a96f6a80bbbc0e5cbe8345e82dea9fef 398 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 2 165 1.0E-31 T 29-03-2018 IPR001453 MoaB/Mog domain AM354_RS23270 a96f6a80bbbc0e5cbe8345e82dea9fef 398 Pfam PF00994 Probable molybdopterin binding domain 6 170 2.3E-31 T 29-03-2018 IPR001453 MoaB/Mog domain AM354_RS23270 a96f6a80bbbc0e5cbe8345e82dea9fef 398 PIRSF PIRSF006728 1 385 4.6E-105 T 29-03-2018 IPR008135 Competence-induced protein CinA AM354_RS23270 a96f6a80bbbc0e5cbe8345e82dea9fef 398 Gene3D G3DSA:3.40.980.10 1 172 7.0E-40 T 29-03-2018 IPR001453 MoaB/Mog domain AM354_RS23270 a96f6a80bbbc0e5cbe8345e82dea9fef 398 Hamap MF_00226_B Putative competence-damage inducible protein [cinA]. 1 398 115.403 T 29-03-2018 IPR008135 Competence-induced protein CinA AM354_RS23270 a96f6a80bbbc0e5cbe8345e82dea9fef 398 SMART SM00852 5 172 1.4E-36 T 29-03-2018 IPR001453 MoaB/Mog domain AM354_RS00315 df2925af2d86ff5cd41f86979e5c20b0 425 Gene3D G3DSA:3.20.20.80 15 425 2.3E-80 T 29-03-2018 AM354_RS00315 df2925af2d86ff5cd41f86979e5c20b0 425 SMART SM00636 28 405 9.0E-72 T 29-03-2018 IPR011583 Chitinase II GO:0008061 AM354_RS00315 df2925af2d86ff5cd41f86979e5c20b0 425 SUPERFAMILY SSF51445 24 281 3.55E-72 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily AM354_RS00315 df2925af2d86ff5cd41f86979e5c20b0 425 SUPERFAMILY SSF51445 377 408 3.55E-72 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily AM354_RS00315 df2925af2d86ff5cd41f86979e5c20b0 425 ProSitePatterns PS01095 Chitinases family 18 active site. 150 158 - T 29-03-2018 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 AM354_RS00315 df2925af2d86ff5cd41f86979e5c20b0 425 Pfam PF00704 Glycosyl hydrolases family 18 31 405 1.0E-65 T 29-03-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 AM354_RS18395 197f3065339da0dc5a1308c7232b2a0a 952 SUPERFAMILY SSF52540 629 866 2.84E-33 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS18395 197f3065339da0dc5a1308c7232b2a0a 952 SUPERFAMILY SSF52540 467 591 2.84E-33 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS18395 197f3065339da0dc5a1308c7232b2a0a 952 TIGRFAM TIGR03744 traC_PFL_4706: conjugative transfer ATPase, PFL_4706 family 47 941 0.0 T 29-03-2018 IPR022303 Conjugative transfer ATPase AM354_RS18395 197f3065339da0dc5a1308c7232b2a0a 952 Gene3D G3DSA:3.40.50.300 360 938 8.8E-17 T 29-03-2018 AM354_RS18395 197f3065339da0dc5a1308c7232b2a0a 952 Pfam PF11130 F pilus assembly Type-IV secretion system for plasmid transfer 58 325 3.8E-73 T 29-03-2018 IPR025955 Type-IV secretion system protein TraC/Conjugative transfer ATPase AM354_RS20105 f6e71c104c1401e00523c1b3775f9209 252 Gene3D G3DSA:1.10.150.20 173 251 3.3E-23 T 29-03-2018 AM354_RS20105 f6e71c104c1401e00523c1b3775f9209 252 Gene3D G3DSA:3.40.50.1010 3 172 2.0E-42 T 29-03-2018 IPR029060 PIN domain-like AM354_RS20105 f6e71c104c1401e00523c1b3775f9209 252 SMART SM00279 162 197 3.6E-9 T 29-03-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 AM354_RS20105 f6e71c104c1401e00523c1b3775f9209 252 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 4 158 4.7E-32 T 29-03-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 AM354_RS20105 f6e71c104c1401e00523c1b3775f9209 252 SUPERFAMILY SSF88723 4 159 4.81E-40 T 29-03-2018 IPR029060 PIN domain-like AM354_RS20105 f6e71c104c1401e00523c1b3775f9209 252 SUPERFAMILY SSF47807 160 244 5.38E-24 T 29-03-2018 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 AM354_RS20105 f6e71c104c1401e00523c1b3775f9209 252 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 160 249 5.2E-25 T 29-03-2018 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 AM354_RS20105 f6e71c104c1401e00523c1b3775f9209 252 SMART SM00475 3 250 3.5E-92 T 29-03-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 AM354_RS20105 f6e71c104c1401e00523c1b3775f9209 252 Hamap MF_01192 Flap endonuclease Xni [xni]. 2 251 45.283 T 29-03-2018 IPR022895 Flap endonuclease Xni GO:0048256 AM354_RS08385 9588950d97ddd42a0b5b5f3811ff9e25 88 SUPERFAMILY SSF117991 3 88 4.58E-32 T 29-03-2018 IPR027471 YbeD-like domain AM354_RS08385 9588950d97ddd42a0b5b5f3811ff9e25 88 Hamap MF_00659 UPF0250 protein YbeD [ybeD]. 2 88 27.378 T 29-03-2018 IPR007454 Uncharacterised protein family UPF0250 AM354_RS08385 9588950d97ddd42a0b5b5f3811ff9e25 88 Gene3D G3DSA:3.30.70.260 6 88 2.3E-32 T 29-03-2018 AM354_RS08385 9588950d97ddd42a0b5b5f3811ff9e25 88 Pfam PF04359 Protein of unknown function (DUF493) 8 88 1.8E-30 T 29-03-2018 IPR007454 Uncharacterised protein family UPF0250 AM354_RS03075 1081a0807559853f58738ebc019610d2 213 Gene3D G3DSA:3.40.50.720 1 213 2.6E-24 T 29-03-2018 AM354_RS03075 1081a0807559853f58738ebc019610d2 213 SUPERFAMILY SSF51735 1 209 3.0E-39 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS03075 1081a0807559853f58738ebc019610d2 213 Pfam PF13460 NAD(P)H-binding 7 202 7.7E-37 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS08780 c43ac1689dc37528c83618af8b454a25 387 SUPERFAMILY SSF110738 6 379 2.62E-143 T 29-03-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 AM354_RS08780 c43ac1689dc37528c83618af8b454a25 387 Gene3D G3DSA:3.90.1510.10 46 280 3.9E-97 T 29-03-2018 IPR018193 Glycerate kinase, flavodoxin-like domain GO:0008887|GO:0031388 AM354_RS08780 c43ac1689dc37528c83618af8b454a25 387 PIRSF PIRSF006078 5 381 9.5E-140 T 29-03-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 AM354_RS08780 c43ac1689dc37528c83618af8b454a25 387 Pfam PF02595 Glycerate kinase family 7 377 1.0E-153 T 29-03-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 AM354_RS08780 c43ac1689dc37528c83618af8b454a25 387 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 6 379 2.4E-162 T 29-03-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 AM354_RS11645 d5b3c3d9c2df39b86139dd5c1e3ed151 509 Gene3D G3DSA:3.30.420.40 1 246 3.8E-78 T 29-03-2018 AM354_RS11645 d5b3c3d9c2df39b86139dd5c1e3ed151 509 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 261 441 2.9E-26 T 29-03-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AM354_RS11645 d5b3c3d9c2df39b86139dd5c1e3ed151 509 SUPERFAMILY SSF53067 251 490 1.12E-48 T 29-03-2018 AM354_RS11645 d5b3c3d9c2df39b86139dd5c1e3ed151 509 PIRSF PIRSF000538 2 495 8.0E-127 T 29-03-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AM354_RS11645 d5b3c3d9c2df39b86139dd5c1e3ed151 509 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 354 374 - T 29-03-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AM354_RS11645 d5b3c3d9c2df39b86139dd5c1e3ed151 509 SUPERFAMILY SSF53067 5 252 1.1E-71 T 29-03-2018 AM354_RS11645 d5b3c3d9c2df39b86139dd5c1e3ed151 509 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 5 249 3.3E-63 T 29-03-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AM354_RS11645 d5b3c3d9c2df39b86139dd5c1e3ed151 509 Gene3D G3DSA:3.30.420.40 247 500 1.2E-52 T 29-03-2018 AM354_RS06340 8234c9572d3adba8212b159c38f5bd03 144 Gene3D G3DSA:3.40.50.2300 3 144 4.1E-40 T 29-03-2018 AM354_RS06340 8234c9572d3adba8212b159c38f5bd03 144 SUPERFAMILY SSF52788 2 139 7.98E-42 T 29-03-2018 IPR023485 Phosphotyrosine protein phosphatase I superfamily AM354_RS06340 8234c9572d3adba8212b159c38f5bd03 144 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 5 139 6.2E-40 T 29-03-2018 IPR023485 Phosphotyrosine protein phosphatase I superfamily AM354_RS06340 8234c9572d3adba8212b159c38f5bd03 144 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 5 22 9.2E-27 T 29-03-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AM354_RS06340 8234c9572d3adba8212b159c38f5bd03 144 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 41 57 9.2E-27 T 29-03-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AM354_RS06340 8234c9572d3adba8212b159c38f5bd03 144 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 75 90 9.2E-27 T 29-03-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AM354_RS06340 8234c9572d3adba8212b159c38f5bd03 144 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 97 110 9.2E-27 T 29-03-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AM354_RS06340 8234c9572d3adba8212b159c38f5bd03 144 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 113 128 9.2E-27 T 29-03-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AM354_RS06340 8234c9572d3adba8212b159c38f5bd03 144 SMART SM00226 3 141 2.7E-56 T 29-03-2018 IPR023485 Phosphotyrosine protein phosphatase I superfamily AM354_RS06970 3fdf103c42a4eeac655400b6d83543e4 189 SUPERFAMILY SSF47413 10 78 8.16E-18 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS06970 3fdf103c42a4eeac655400b6d83543e4 189 SUPERFAMILY SSF51182 64 189 9.24E-19 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS06970 3fdf103c42a4eeac655400b6d83543e4 189 SMART SM00530 15 70 6.9E-16 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM354_RS06970 3fdf103c42a4eeac655400b6d83543e4 189 Gene3D G3DSA:1.10.260.40 3 74 1.0E-18 T 29-03-2018 AM354_RS06970 3fdf103c42a4eeac655400b6d83543e4 189 Gene3D G3DSA:2.60.120.10 75 189 2.4E-9 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS06970 3fdf103c42a4eeac655400b6d83543e4 189 Pfam PF01381 Helix-turn-helix 16 68 1.2E-15 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM354_RS22230 9bb7036b833ca60b049f1c40ccb27af3 267 SUPERFAMILY SSF74653 143 261 1.83E-16 T 29-03-2018 AM354_RS22230 9bb7036b833ca60b049f1c40ccb27af3 267 Gene3D G3DSA:3.30.1150.10 155 259 2.7E-17 T 29-03-2018 AM354_RS22230 9bb7036b833ca60b049f1c40ccb27af3 267 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 183 260 1.0E-20 T 29-03-2018 IPR006260 TonB, C-terminal GO:0006810 AM354_RS22230 9bb7036b833ca60b049f1c40ccb27af3 267 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 182 260 7.3E-18 T 29-03-2018 IPR006260 TonB, C-terminal GO:0006810 AM354_RS21205 5443c714add6fd7c04bb801f34efc06b 211 Pfam PF06226 Protein of unknown function (DUF1007) 8 210 4.1E-63 T 29-03-2018 IPR010412 Protein of unknown function DUF1007 AM354_RS21205 5443c714add6fd7c04bb801f34efc06b 211 PIRSF PIRSF008159 1 211 2.4E-70 T 29-03-2018 IPR016537 Uncharacterised conserved protein UCP008159, AM354_RS00690 dd48fa5b39d79c88cb56b86aa5e8e785 186 Pfam PF03592 Terminase small subunit 6 160 1.3E-27 T 29-03-2018 IPR005335 Terminase small subunit GO:0006323 AM354_RS16675 59980b1d2808b9f174faed0167a68f35 199 Hamap MF_01207 Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ [msrQ]. 3 197 20.953 T 29-03-2018 IPR022837 Protein-methionine-sulfoxide reductase subunit MsrQ GO:0005887|GO:0030091 AM354_RS16675 59980b1d2808b9f174faed0167a68f35 199 Pfam PF01794 Ferric reductase like transmembrane component 48 161 3.2E-14 T 29-03-2018 IPR013130 Ferric reductase transmembrane component-like domain AM354_RS12135 fc6ebafba71a0778303f628eab5fad2a 87 Gene3D G3DSA:3.30.1660.10 21 87 6.1E-25 T 29-03-2018 IPR025543 Dodecin-like AM354_RS12135 fc6ebafba71a0778303f628eab5fad2a 87 Pfam PF07338 Protein of unknown function (DUF1471) 34 87 2.3E-22 T 29-03-2018 IPR010854 Domain of unknown function DUF1471 AM354_RS12135 fc6ebafba71a0778303f628eab5fad2a 87 SUPERFAMILY SSF159871 3 87 1.96E-26 T 29-03-2018 IPR010854 Domain of unknown function DUF1471 AM354_RS09510 f90626e66362f9f5e00fab4f6bb4e28a 293 SUPERFAMILY SSF51182 3 288 1.13E-83 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS09510 f90626e66362f9f5e00fab4f6bb4e28a 293 Gene3D G3DSA:2.60.120.10 1 257 1.3E-81 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS09510 f90626e66362f9f5e00fab4f6bb4e28a 293 Pfam PF02678 Pirin 27 127 3.0E-33 T 29-03-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 AM354_RS09510 f90626e66362f9f5e00fab4f6bb4e28a 293 PIRSF PIRSF006232 1 291 7.5E-89 T 29-03-2018 IPR012093 Pirin Reactome: R-HSA-8935690 AM354_RS09510 f90626e66362f9f5e00fab4f6bb4e28a 293 Pfam PF05726 Pirin C-terminal cupin domain 182 284 8.2E-29 T 29-03-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 AM354_RS09920 092dadb33039351c6192ed7d99e404b1 279 SUPERFAMILY SSF53697 96 254 8.01E-15 T 29-03-2018 AM354_RS09920 092dadb33039351c6192ed7d99e404b1 279 Gene3D G3DSA:3.40.50.10490 85 278 4.0E-21 T 29-03-2018 AM354_RS09920 092dadb33039351c6192ed7d99e404b1 279 Gene3D G3DSA:1.10.10.10 1 77 3.1E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS09920 092dadb33039351c6192ed7d99e404b1 279 Pfam PF01418 Helix-turn-helix domain, rpiR family 6 72 5.3E-11 T 29-03-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 AM354_RS09920 092dadb33039351c6192ed7d99e404b1 279 SUPERFAMILY SSF46689 3 79 3.94E-18 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS09920 092dadb33039351c6192ed7d99e404b1 279 Pfam PF01380 SIS domain 124 247 3.7E-13 T 29-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AM354_RS15315 d7aa640a01f9976905aa837067f76a4b 178 Pfam PF00419 Fimbrial protein 34 178 1.7E-18 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS15315 d7aa640a01f9976905aa837067f76a4b 178 Gene3D G3DSA:2.60.40.1090 31 178 4.5E-36 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS15315 d7aa640a01f9976905aa837067f76a4b 178 SUPERFAMILY SSF49401 32 178 2.19E-38 T 29-03-2018 IPR008966 Adhesion domain AM354_RS23105 7d8e8e6e771af463e1d30380869a0763 610 Gene3D G3DSA:3.30.70.1450 323 398 1.6E-17 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM354_RS23105 7d8e8e6e771af463e1d30380869a0763 610 Pfam PF03600 Citrate transporter 430 605 2.6E-22 T 29-03-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 AM354_RS23105 7d8e8e6e771af463e1d30380869a0763 610 Pfam PF03600 Citrate transporter 16 196 4.9E-35 T 29-03-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 AM354_RS23105 7d8e8e6e771af463e1d30380869a0763 610 SUPERFAMILY SSF116726 319 394 4.32E-18 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM354_RS23105 7d8e8e6e771af463e1d30380869a0763 610 Gene3D G3DSA:3.30.70.1450 224 308 1.7E-14 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM354_RS23105 7d8e8e6e771af463e1d30380869a0763 610 SUPERFAMILY SSF116726 232 294 5.36E-11 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM354_RS23105 7d8e8e6e771af463e1d30380869a0763 610 Pfam PF02080 TrkA-C domain 231 298 4.4E-18 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM354_RS23105 7d8e8e6e771af463e1d30380869a0763 610 Pfam PF02080 TrkA-C domain 326 394 3.8E-12 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM354_RS23105 7d8e8e6e771af463e1d30380869a0763 610 ProSitePatterns PS01271 Sodium:sulfate symporter family signature. 558 574 - T 29-03-2018 IPR031312 Sodium/sulphate symporter, conserved site Reactome: R-HSA-433137 AM354_RS15085 bf81e896e13ee2d9a4628e4bce0febef 145 Pfam PF07030 Protein of unknown function (DUF1320) 4 126 5.6E-31 T 29-03-2018 IPR009752 Bacteriophage Mu, Gp36 AM354_RS12405 626bd5f4c4cc2f4902b5ccdb249e9b4d 244 SUPERFAMILY SSF54292 3 106 5.58E-29 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM354_RS12405 626bd5f4c4cc2f4902b5ccdb249e9b4d 244 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 149 160 - T 29-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM354_RS12405 626bd5f4c4cc2f4902b5ccdb249e9b4d 244 Gene3D G3DSA:3.10.20.30 1 106 4.0E-29 T 29-03-2018 IPR012675 Beta-grasp domain AM354_RS12405 626bd5f4c4cc2f4902b5ccdb249e9b4d 244 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 58 66 - T 29-03-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AM354_RS12405 626bd5f4c4cc2f4902b5ccdb249e9b4d 244 SUPERFAMILY SSF46548 107 229 4.01E-31 T 29-03-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AM354_RS12405 626bd5f4c4cc2f4902b5ccdb249e9b4d 244 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 8 111 6.7E-31 T 29-03-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM354_RS12405 626bd5f4c4cc2f4902b5ccdb249e9b4d 244 Pfam PF13183 4Fe-4S dicluster domain 146 219 8.3E-12 T 29-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM354_RS12405 626bd5f4c4cc2f4902b5ccdb249e9b4d 244 Gene3D G3DSA:1.10.1060.10 107 243 2.2E-26 T 29-03-2018 AM354_RS12405 626bd5f4c4cc2f4902b5ccdb249e9b4d 244 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 11 229 2.3E-96 T 29-03-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM354_RS05190 44188687176a61a829b43486e219d65e 521 PIRSF PIRSF006060 433 514 1300.0 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM354_RS05190 44188687176a61a829b43486e219d65e 521 PIRSF PIRSF006060 1 454 4.9E-73 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM354_RS05190 44188687176a61a829b43486e219d65e 521 Pfam PF13520 Amino acid permease 12 465 3.4E-40 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM354_RS07715 4cc19831ff1dad8b2a839f0085b09065 88 Pfam PF09905 DNA-binding protein VF530 7 68 8.8E-35 T 29-03-2018 IPR018668 DNA-binding protein VF530-like GO:0003677 AM354_RS07715 4cc19831ff1dad8b2a839f0085b09065 88 Gene3D G3DSA:1.10.720.30 14 70 4.8E-32 T 29-03-2018 IPR003034 SAP domain AM354_RS25825 dc02b0b6ec0cdf93a1e4664de96e1eea 446 Hamap MF_01172 N-succinylarginine dihydrolase [astB]. 1 446 60.148 T 29-03-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 AM354_RS25825 dc02b0b6ec0cdf93a1e4664de96e1eea 446 SUPERFAMILY SSF55909 4 446 3.34E-208 T 29-03-2018 AM354_RS25825 dc02b0b6ec0cdf93a1e4664de96e1eea 446 Pfam PF04996 Succinylarginine dihydrolase 4 445 3.8E-222 T 29-03-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 AM354_RS25825 dc02b0b6ec0cdf93a1e4664de96e1eea 446 TIGRFAM TIGR03241 arg_catab_astB: succinylarginine dihydrolase 3 445 5.0E-249 T 29-03-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 AM354_RS25825 dc02b0b6ec0cdf93a1e4664de96e1eea 446 Gene3D G3DSA:3.75.10.20 2 446 3.3E-222 T 29-03-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 AM354_RS15760 c43feb99672f01615fd3d66229cd0f75 427 SUPERFAMILY SSF51338 7 60 8.64E-6 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM354_RS15760 c43feb99672f01615fd3d66229cd0f75 427 Gene3D G3DSA:2.30.40.10 15 66 8.4E-7 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM354_RS15760 c43feb99672f01615fd3d66229cd0f75 427 Gene3D G3DSA:3.20.20.140 67 365 3.0E-47 T 29-03-2018 AM354_RS15760 c43feb99672f01615fd3d66229cd0f75 427 SUPERFAMILY SSF51556 58 376 1.36E-106 T 29-03-2018 IPR032466 Metal-dependent hydrolase AM354_RS15760 c43feb99672f01615fd3d66229cd0f75 427 Pfam PF07969 Amidohydrolase family 45 405 7.6E-56 T 29-03-2018 IPR013108 Amidohydrolase 3 AM354_RS25050 3c9570bd84b7e239cd5d2be5bf6eb4c1 580 Pfam PF00498 FHA domain 27 93 1.7E-7 T 29-03-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 AM354_RS25050 3c9570bd84b7e239cd5d2be5bf6eb4c1 580 Gene3D G3DSA:2.60.200.20 2 109 3.8E-12 T 29-03-2018 AM354_RS25050 3c9570bd84b7e239cd5d2be5bf6eb4c1 580 TIGRFAM TIGR03354 VI_FHA: type VI secretion system FHA domain protein 240 567 6.5E-44 T 29-03-2018 IPR017735 Type VI secretion system, FHA domain-containing protein AM354_RS25050 3c9570bd84b7e239cd5d2be5bf6eb4c1 580 SUPERFAMILY SSF49879 23 107 1.13E-12 T 29-03-2018 IPR008984 SMAD/FHA domain GO:0005515 AM354_RS15320 1c9f1deb3b954bcbc498c09dc1ce6306 95 Gene3D G3DSA:1.10.10.10 10 93 1.2E-7 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS15320 1c9f1deb3b954bcbc498c09dc1ce6306 95 Pfam PF04703 FaeA-like protein 42 71 8.6E-5 T 29-03-2018 IPR006793 FaeA-like protein GO:0006355|GO:0009289 AM354_RS16010 68a836c4bdd440254b202ac6f989a91c 201 SUPERFAMILY SSF52166 10 200 1.24E-72 T 29-03-2018 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 AM354_RS16010 68a836c4bdd440254b202ac6f989a91c 201 Gene3D G3DSA:3.40.1370.10 141 199 1.0E-11 T 29-03-2018 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 AM354_RS16010 68a836c4bdd440254b202ac6f989a91c 201 Gene3D G3DSA:3.40.1370.10 4 140 1.9E-47 T 29-03-2018 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 AM354_RS16010 68a836c4bdd440254b202ac6f989a91c 201 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 6 201 33.902 T 29-03-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS16010 68a836c4bdd440254b202ac6f989a91c 201 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 13 198 1.6E-74 T 29-03-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS16010 68a836c4bdd440254b202ac6f989a91c 201 Pfam PF00573 Ribosomal protein L4/L1 family 13 198 4.6E-64 T 29-03-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 AM354_RS15750 7855d5e52687d6155160e2e11b47d3f6 108 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 3 107 2.3E-36 T 29-03-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 AM354_RS15750 7855d5e52687d6155160e2e11b47d3f6 108 Pfam PF13806 Rieske-like [2Fe-2S] domain 3 107 1.0E-39 T 29-03-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 AM354_RS15750 7855d5e52687d6155160e2e11b47d3f6 108 Gene3D G3DSA:2.102.10.10 1 108 1.9E-19 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AM354_RS15750 7855d5e52687d6155160e2e11b47d3f6 108 SUPERFAMILY SSF50022 1 107 1.96E-36 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AM354_RS01620 0e1076826fb8a248181b85d94df87b1f 197 Gene3D G3DSA:1.10.10.60 1 59 2.5E-16 T 29-03-2018 AM354_RS01620 0e1076826fb8a248181b85d94df87b1f 197 SUPERFAMILY SSF48498 81 193 2.52E-27 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AM354_RS01620 0e1076826fb8a248181b85d94df87b1f 197 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 59 3.0E-14 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS01620 0e1076826fb8a248181b85d94df87b1f 197 Gene3D G3DSA:1.10.357.10 60 194 2.8E-23 T 29-03-2018 AM354_RS01620 0e1076826fb8a248181b85d94df87b1f 197 ProSitePatterns PS01081 TetR-type HTH domain signature. 25 55 - T 29-03-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AM354_RS01620 0e1076826fb8a248181b85d94df87b1f 197 SUPERFAMILY SSF46689 3 80 4.09E-15 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS10535 4fa706d4eee853b96b7fbecb7dae950a 305 Hamap MF_00388 UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 2 280 46.291 T 29-03-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 AM354_RS10535 4fa706d4eee853b96b7fbecb7dae950a 305 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 4 276 5.5E-109 T 29-03-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 AM354_RS10535 4fa706d4eee853b96b7fbecb7dae950a 305 SUPERFAMILY SSF54211 3 124 3.49E-41 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM354_RS10535 4fa706d4eee853b96b7fbecb7dae950a 305 Gene3D G3DSA:3.30.230.20 1 128 2.0E-48 T 29-03-2018 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 AM354_RS10535 4fa706d4eee853b96b7fbecb7dae950a 305 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 301 8.0E-158 T 29-03-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 AM354_RS10535 4fa706d4eee853b96b7fbecb7dae950a 305 Gene3D G3DSA:3.30.1700.10 129 299 1.5E-71 T 29-03-2018 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 AM354_RS10535 4fa706d4eee853b96b7fbecb7dae950a 305 SUPERFAMILY SSF54211 134 278 1.06E-54 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM354_RS24905 82f4b50431e7a25fbbfe15d1ea6a3bb9 67 Gene3D G3DSA:3.90.1680.10 5 66 9.7E-8 T 29-03-2018 IPR003738 SOS response associated peptidase (SRAP) AM354_RS24905 82f4b50431e7a25fbbfe15d1ea6a3bb9 67 SUPERFAMILY SSF143081 9 62 8.11E-6 T 29-03-2018 IPR003738 SOS response associated peptidase (SRAP) AM354_RS16095 8387aa33ffca69adfa0c37639a24af76 59 PIRSF PIRSF002211 1 59 7.4E-29 T 29-03-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS16095 8387aa33ffca69adfa0c37639a24af76 59 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 5 59 2.0E-26 T 29-03-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS16095 8387aa33ffca69adfa0c37639a24af76 59 ProSitePatterns PS00634 Ribosomal protein L30 signature. 23 55 - T 29-03-2018 IPR018038 Ribosomal protein L30, conserved site AM354_RS16095 8387aa33ffca69adfa0c37639a24af76 59 Gene3D G3DSA:3.30.1390.20 5 59 3.2E-24 T 29-03-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain AM354_RS16095 8387aa33ffca69adfa0c37639a24af76 59 Pfam PF00327 Ribosomal protein L30p/L7e 5 55 9.0E-20 T 29-03-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain AM354_RS16095 8387aa33ffca69adfa0c37639a24af76 59 SUPERFAMILY SSF55129 3 59 1.57E-21 T 29-03-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain AM354_RS16095 8387aa33ffca69adfa0c37639a24af76 59 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 2 59 22.14 T 29-03-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS03085 c13f9892420d446730968d591c37b938 201 SUPERFAMILY SSF46689 10 80 5.64E-15 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS03085 c13f9892420d446730968d591c37b938 201 Gene3D G3DSA:1.10.357.10 63 197 1.4E-25 T 29-03-2018 AM354_RS03085 c13f9892420d446730968d591c37b938 201 Pfam PF00440 Bacterial regulatory proteins, tetR family 25 60 8.6E-9 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS03085 c13f9892420d446730968d591c37b938 201 SUPERFAMILY SSF48498 82 197 3.06E-25 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AM354_RS03085 c13f9892420d446730968d591c37b938 201 Pfam PF16925 Bacterial transcriptional repressor C-terminal 88 189 7.5E-11 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AM354_RS03085 c13f9892420d446730968d591c37b938 201 Gene3D G3DSA:1.10.10.60 10 62 2.5E-14 T 29-03-2018 AM354_RS09015 03fdf46ea830f4b488c080deb2668e22 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 29-03-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 AM354_RS09015 03fdf46ea830f4b488c080deb2668e22 112 PRINTS PR00340 P-II protein signature 83 103 5.2E-41 T 29-03-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AM354_RS09015 03fdf46ea830f4b488c080deb2668e22 112 PRINTS PR00340 P-II protein signature 2 17 5.2E-41 T 29-03-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AM354_RS09015 03fdf46ea830f4b488c080deb2668e22 112 PRINTS PR00340 P-II protein signature 52 75 5.2E-41 T 29-03-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AM354_RS09015 03fdf46ea830f4b488c080deb2668e22 112 PRINTS PR00340 P-II protein signature 23 41 5.2E-41 T 29-03-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AM354_RS09015 03fdf46ea830f4b488c080deb2668e22 112 SMART SM00938 4 105 1.6E-61 T 29-03-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AM354_RS09015 03fdf46ea830f4b488c080deb2668e22 112 Gene3D G3DSA:3.30.70.120 1 108 4.7E-46 T 29-03-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal AM354_RS09015 03fdf46ea830f4b488c080deb2668e22 112 PIRSF PIRSF039144 1 112 2.4E-53 T 29-03-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AM354_RS09015 03fdf46ea830f4b488c080deb2668e22 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 1.4E-41 T 29-03-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AM354_RS09015 03fdf46ea830f4b488c080deb2668e22 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 29-03-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 AM354_RS09015 03fdf46ea830f4b488c080deb2668e22 112 SUPERFAMILY SSF54913 1 112 1.94E-42 T 29-03-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta AM354_RS07540 717b9c2558cbed3ec5fb93f82d0732dd 151 SUPERFAMILY SSF55729 1 136 4.63E-25 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS07540 717b9c2558cbed3ec5fb93f82d0732dd 151 Pfam PF00583 Acetyltransferase (GNAT) family 19 135 5.7E-14 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS07540 717b9c2558cbed3ec5fb93f82d0732dd 151 Gene3D G3DSA:3.40.630.30 1 142 2.3E-24 T 29-03-2018 AM354_RS14095 e9792f8671af1352cdd0bcbcda03f4e7 333 SUPERFAMILY SSF47413 2 59 9.01E-18 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS14095 e9792f8671af1352cdd0bcbcda03f4e7 333 Gene3D G3DSA:3.40.50.2300 55 176 1.3E-32 T 29-03-2018 AM354_RS14095 e9792f8671af1352cdd0bcbcda03f4e7 333 SUPERFAMILY SSF53822 60 331 4.88E-91 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS14095 e9792f8671af1352cdd0bcbcda03f4e7 333 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 29-03-2018 AM354_RS14095 e9792f8671af1352cdd0bcbcda03f4e7 333 SMART SM00354 1 71 5.1E-34 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS14095 e9792f8671af1352cdd0bcbcda03f4e7 333 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 6.6E-21 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS14095 e9792f8671af1352cdd0bcbcda03f4e7 333 Gene3D G3DSA:1.10.260.40 2 54 1.8E-22 T 29-03-2018 AM354_RS14095 e9792f8671af1352cdd0bcbcda03f4e7 333 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 4.6E-6 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS14095 e9792f8671af1352cdd0bcbcda03f4e7 333 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 4.6E-6 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM354_RS14095 e9792f8671af1352cdd0bcbcda03f4e7 333 Pfam PF13377 Periplasmic binding protein-like domain 169 330 3.6E-44 T 29-03-2018 AM354_RS14095 e9792f8671af1352cdd0bcbcda03f4e7 333 Gene3D G3DSA:3.40.50.2300 177 333 5.6E-49 T 29-03-2018 AM354_RS08925 09215c2357c57b020a3d9f2fd6ad0a0d 376 SUPERFAMILY SSF53067 5 144 1.68E-17 T 29-03-2018 AM354_RS08925 09215c2357c57b020a3d9f2fd6ad0a0d 376 Pfam PF05134 Type II secretion system (T2SS), protein L 33 226 3.4E-34 T 29-03-2018 IPR024230 GspL, cytoplasmic actin-ATPase-like domain AM354_RS08925 09215c2357c57b020a3d9f2fd6ad0a0d 376 PIRSF PIRSF015761 40 345 3.9E-27 T 29-03-2018 IPR007812 Type II secretion system protein L GO:0008565|GO:0009276|GO:0015031|GO:0016021 AM354_RS08925 09215c2357c57b020a3d9f2fd6ad0a0d 376 SUPERFAMILY SSF53067 145 225 2.4E-7 T 29-03-2018 AM354_RS05455 2f73d615c7d2b5fd50186b6b74fac67b 582 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 433 529 1.8E-9 T 29-03-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 AM354_RS05455 2f73d615c7d2b5fd50186b6b74fac67b 582 SUPERFAMILY SSF54211 347 538 7.59E-34 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM354_RS05455 2f73d615c7d2b5fd50186b6b74fac67b 582 Pfam PF13654 AAA domain 139 321 1.8E-23 T 29-03-2018 AM354_RS05455 2f73d615c7d2b5fd50186b6b74fac67b 582 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 460 479 3.9E-10 T 29-03-2018 AM354_RS05455 2f73d615c7d2b5fd50186b6b74fac67b 582 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 430 449 3.9E-10 T 29-03-2018 AM354_RS05455 2f73d615c7d2b5fd50186b6b74fac67b 582 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 347 363 3.9E-10 T 29-03-2018 AM354_RS05455 2f73d615c7d2b5fd50186b6b74fac67b 582 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 490 508 3.9E-10 T 29-03-2018 AM354_RS05455 2f73d615c7d2b5fd50186b6b74fac67b 582 Gene3D G3DSA:3.30.230.10 324 564 1.5E-28 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AM354_RS09145 432eda224931375a7e5bc27851b37621 303 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 2 291 5.7E-80 T 29-03-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0015940|GO:0016491|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|MetaCyc: PWY-7862 AM354_RS09145 432eda224931375a7e5bc27851b37621 303 SUPERFAMILY SSF48179 168 289 6.46E-36 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM354_RS09145 432eda224931375a7e5bc27851b37621 303 Gene3D G3DSA:3.40.50.720 1 167 4.0E-25 T 29-03-2018 AM354_RS09145 432eda224931375a7e5bc27851b37621 303 SUPERFAMILY SSF51735 1 167 3.07E-62 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS09145 432eda224931375a7e5bc27851b37621 303 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 168 289 5.6E-34 T 29-03-2018 IPR013752 Ketopantoate reductase, C-terminal domain GO:0016491|GO:0050661|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|MetaCyc: PWY-7862 AM354_RS09145 432eda224931375a7e5bc27851b37621 303 Gene3D G3DSA:1.10.1040.10 168 296 1.7E-38 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM354_RS09145 432eda224931375a7e5bc27851b37621 303 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 142 3.0E-25 T 29-03-2018 IPR013332 Ketopantoate reductase, N-terminal domain GO:0008677|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|MetaCyc: PWY-7862 AM354_RS22050 99272d728a6a6fe1f09366070cc1d5aa 358 Pfam PF01594 AI-2E family transporter 20 345 1.7E-78 T 29-03-2018 IPR002549 Transmembrane protein TqsA-like AM354_RS24710 87e105e49e345123278e7ca5155d048c 325 Pfam PF05138 Phenylacetic acid catabolic protein 34 308 2.6E-100 T 29-03-2018 IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C GO:0010124 AM354_RS24710 87e105e49e345123278e7ca5155d048c 325 TIGRFAM TIGR02156 PA_CoA_Oxy1: phenylacetate-CoA oxygenase, PaaG subunit 24 311 3.0E-154 T 29-03-2018 IPR011881 1,2-phenylacetyl-CoA epoxidase, subunit A GO:0010124|GO:0097266 KEGG: 00360+1.14.13.14+1.14.13.149|KEGG: 00940+1.14.13.14|MetaCyc: PWY-5176 AM354_RS24710 87e105e49e345123278e7ca5155d048c 325 SUPERFAMILY SSF47240 44 287 1.74E-81 T 29-03-2018 IPR009078 Ferritin-like superfamily AM354_RS24710 87e105e49e345123278e7ca5155d048c 325 Gene3D G3DSA:1.10.620.20 9 305 2.9E-77 T 29-03-2018 AM354_RS02120 7749f01394c1f2169a52d01e4cb68616 420 Pfam PF13379 NMT1-like family 44 293 2.5E-105 T 29-03-2018 AM354_RS02120 7749f01394c1f2169a52d01e4cb68616 420 SUPERFAMILY SSF53850 46 281 3.72E-30 T 29-03-2018 AM354_RS02120 7749f01394c1f2169a52d01e4cb68616 420 Gene3D G3DSA:3.40.190.10 165 374 8.3E-39 T 29-03-2018 AM354_RS02120 7749f01394c1f2169a52d01e4cb68616 420 Gene3D G3DSA:3.40.190.10 45 164 2.0E-9 T 29-03-2018 AM354_RS03935 e50d81a3b31b142a2afaafb857ef70cf 304 Pfam PF04865 Baseplate J-like protein 116 263 1.4E-26 T 29-03-2018 IPR006949 Baseplate protein J-like AM354_RS03935 e50d81a3b31b142a2afaafb857ef70cf 304 PIRSF PIRSF020481 5 302 5.9E-91 T 29-03-2018 IPR014507 Baseplate assembly protein J, predicted AM354_RS09285 5929beef4fc7f3c35574bb92279b7ff9 95 Pfam PF01381 Helix-turn-helix 14 66 1.4E-10 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM354_RS09285 5929beef4fc7f3c35574bb92279b7ff9 95 SMART SM00530 13 68 1.0E-8 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM354_RS09285 5929beef4fc7f3c35574bb92279b7ff9 95 SUPERFAMILY SSF47413 9 88 1.6E-26 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS09285 5929beef4fc7f3c35574bb92279b7ff9 95 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 4 82 5.9E-31 T 29-03-2018 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 AM354_RS09285 5929beef4fc7f3c35574bb92279b7ff9 95 Gene3D G3DSA:1.10.260.40 1 83 1.7E-16 T 29-03-2018 AM354_RS03110 14dbed535fb304d459b475cd3ffebe18 272 Gene3D G3DSA:3.90.1720.10 63 190 1.9E-17 T 29-03-2018 AM354_RS03110 14dbed535fb304d459b475cd3ffebe18 272 Gene3D G3DSA:2.30.260.10 191 270 2.1E-17 T 29-03-2018 AM354_RS03110 14dbed535fb304d459b475cd3ffebe18 272 Pfam PF00877 NlpC/P60 family 154 264 3.4E-32 T 29-03-2018 IPR000064 Endopeptidase, NLPC/P60 domain AM354_RS03110 14dbed535fb304d459b475cd3ffebe18 272 SUPERFAMILY SSF54001 135 266 4.76E-40 T 29-03-2018 AM354_RS03785 5e18e6cc9ccc21fac40737933682c5b3 225 Gene3D G3DSA:3.40.50.850 8 215 2.4E-36 T 29-03-2018 AM354_RS03785 5e18e6cc9ccc21fac40737933682c5b3 225 SUPERFAMILY SSF52499 12 210 3.92E-45 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM354_RS03785 5e18e6cc9ccc21fac40737933682c5b3 225 Pfam PF00857 Isochorismatase family 20 172 8.8E-20 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM354_RS19795 e8b0f80e51f3d37202432c7abbe16123 80 Gene3D G3DSA:1.10.1200.10 2 80 6.0E-14 T 29-03-2018 AM354_RS19795 e8b0f80e51f3d37202432c7abbe16123 80 SUPERFAMILY SSF47336 6 80 7.33E-14 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS19795 e8b0f80e51f3d37202432c7abbe16123 80 Pfam PF00550 Phosphopantetheine attachment site 10 76 1.7E-11 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM354_RS24755 db24b19714ffd4780a75bd0a61340747 129 Pfam PF06078 Bacterial protein of unknown function (DUF937) 6 105 5.0E-10 T 29-03-2018 IPR009282 Protein of unknown function DUF937 AM354_RS24755 db24b19714ffd4780a75bd0a61340747 129 SUPERFAMILY SSF140804 8 118 1.29E-33 T 29-03-2018 IPR027405 YidB-like AM354_RS24755 db24b19714ffd4780a75bd0a61340747 129 Gene3D G3DSA:1.10.10.690 1 129 4.1E-40 T 29-03-2018 AM354_RS02855 af9f20feed75086ef24e99c139bf915d 198 Gene3D G3DSA:3.90.79.10 2 198 1.5E-30 T 29-03-2018 AM354_RS02855 af9f20feed75086ef24e99c139bf915d 198 SUPERFAMILY SSF55811 10 192 1.74E-40 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 AM354_RS02855 af9f20feed75086ef24e99c139bf915d 198 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 9 189 2.1E-45 T 29-03-2018 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 AM354_RS03320 b0a944d21e3f7aa43558ba515c7a2b9f 154 SUPERFAMILY SSF54001 35 154 1.3E-39 T 29-03-2018 AM354_RS03320 b0a944d21e3f7aa43558ba515c7a2b9f 154 Pfam PF00877 NlpC/P60 family 47 153 3.1E-29 T 29-03-2018 IPR000064 Endopeptidase, NLPC/P60 domain AM354_RS03320 b0a944d21e3f7aa43558ba515c7a2b9f 154 Gene3D G3DSA:3.90.1720.10 34 154 9.5E-36 T 29-03-2018 AM354_RS12990 b205f5b2f6bc4c6f533c54658c943cec 356 Gene3D G3DSA:3.40.50.300 2 237 5.2E-70 T 29-03-2018 AM354_RS12990 b205f5b2f6bc4c6f533c54658c943cec 356 Gene3D G3DSA:2.40.50.140 288 340 4.3E-12 T 29-03-2018 AM354_RS12990 b205f5b2f6bc4c6f533c54658c943cec 356 SUPERFAMILY SSF50331 237 354 6.32E-29 T 29-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal AM354_RS12990 b205f5b2f6bc4c6f533c54658c943cec 356 Gene3D G3DSA:2.40.50.100 240 287 1.9E-14 T 29-03-2018 AM354_RS12990 b205f5b2f6bc4c6f533c54658c943cec 356 Pfam PF00005 ABC transporter 21 162 1.4E-30 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS12990 b205f5b2f6bc4c6f533c54658c943cec 356 SMART SM00382 29 212 6.1E-13 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS12990 b205f5b2f6bc4c6f533c54658c943cec 356 Pfam PF08402 TOBE domain 278 347 1.8E-7 T 29-03-2018 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 AM354_RS12990 b205f5b2f6bc4c6f533c54658c943cec 356 SUPERFAMILY SSF52540 4 242 1.05E-85 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS12990 b205f5b2f6bc4c6f533c54658c943cec 356 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS09830 b5caddf81c6540b0f133562627e4a465 209 TIGRFAM TIGR01939 nqrD: NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit 4 206 9.1E-104 T 29-03-2018 IPR011292 Na(+)-translocating NADH-quinone reductase subunit D GO:0016655|GO:0055114 AM354_RS09830 b5caddf81c6540b0f133562627e4a465 209 Pfam PF02508 Rnf-Nqr subunit, membrane protein 9 195 9.7E-62 T 29-03-2018 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 AM354_RS09830 b5caddf81c6540b0f133562627e4a465 209 PIRSF PIRSF006102 3 209 7.9E-71 T 29-03-2018 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 AM354_RS09830 b5caddf81c6540b0f133562627e4a465 209 Hamap MF_00428 Na(+)-translocating NADH-quinone reductase subunit D [nqrD]. 2 207 36.501 T 29-03-2018 IPR011292 Na(+)-translocating NADH-quinone reductase subunit D GO:0016655|GO:0055114 AM354_RS08630 110b7c6773b2a1b23195d1202c5a6470 419 Pfam PF07690 Major Facilitator Superfamily 21 369 6.1E-49 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS08630 110b7c6773b2a1b23195d1202c5a6470 419 Gene3D G3DSA:1.20.1250.20 5 204 6.7E-33 T 29-03-2018 AM354_RS08630 110b7c6773b2a1b23195d1202c5a6470 419 Gene3D G3DSA:1.20.1250.20 208 419 1.4E-25 T 29-03-2018 AM354_RS08630 110b7c6773b2a1b23195d1202c5a6470 419 SUPERFAMILY SSF103473 6 407 5.23E-70 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS08630 110b7c6773b2a1b23195d1202c5a6470 419 ProSitePatterns PS00217 Sugar transport proteins signature 2. 110 135 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM354_RS14830 c461d1dfc6bf011ad45256675e1d501a 440 Pfam PF00083 Sugar (and other) transporter 24 230 4.3E-24 T 29-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AM354_RS14830 c461d1dfc6bf011ad45256675e1d501a 440 ProSitePatterns PS00216 Sugar transport proteins signature 1. 309 326 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM354_RS14830 c461d1dfc6bf011ad45256675e1d501a 440 SUPERFAMILY SSF103473 19 440 4.84E-65 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS14830 c461d1dfc6bf011ad45256675e1d501a 440 Pfam PF07690 Major Facilitator Superfamily 284 438 2.0E-13 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS14830 c461d1dfc6bf011ad45256675e1d501a 440 Gene3D G3DSA:1.20.1250.20 20 232 1.3E-23 T 29-03-2018 AM354_RS14830 c461d1dfc6bf011ad45256675e1d501a 440 Gene3D G3DSA:1.20.1250.20 233 440 6.4E-23 T 29-03-2018 AM354_RS14830 c461d1dfc6bf011ad45256675e1d501a 440 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 31 425 1.1E-149 T 29-03-2018 IPR004736 Citrate-proton symport GO:0005215|GO:0006810|GO:0016021 AM354_RS19945 a2388a0c5cda38a632ae5ea6867a0dcf 752 Gene3D G3DSA:3.40.228.10 142 394 1.3E-48 T 29-03-2018 AM354_RS19945 a2388a0c5cda38a632ae5ea6867a0dcf 752 Gene3D G3DSA:3.40.228.10 395 468 0.17 T 29-03-2018 AM354_RS19945 a2388a0c5cda38a632ae5ea6867a0dcf 752 Gene3D G3DSA:3.40.228.10 544 606 6.2E-9 T 29-03-2018 AM354_RS19945 a2388a0c5cda38a632ae5ea6867a0dcf 752 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 453 470 - T 29-03-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 AM354_RS19945 a2388a0c5cda38a632ae5ea6867a0dcf 752 SUPERFAMILY SSF53706 11 608 2.75E-153 T 29-03-2018 AM354_RS19945 a2388a0c5cda38a632ae5ea6867a0dcf 752 Pfam PF00384 Molybdopterin oxidoreductase 52 509 9.6E-60 T 29-03-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS19945 a2388a0c5cda38a632ae5ea6867a0dcf 752 SUPERFAMILY SSF50692 618 750 2.49E-33 T 29-03-2018 IPR009010 Aspartate decarboxylase-like domain AM354_RS19945 a2388a0c5cda38a632ae5ea6867a0dcf 752 Gene3D G3DSA:3.90.55.10 474 543 8.6E-22 T 29-03-2018 AM354_RS19945 a2388a0c5cda38a632ae5ea6867a0dcf 752 Gene3D G3DSA:3.90.55.10 4 88 1.4E-15 T 29-03-2018 AM354_RS19945 a2388a0c5cda38a632ae5ea6867a0dcf 752 Gene3D G3DSA:2.40.40.20 607 751 8.7E-32 T 29-03-2018 AM354_RS19945 a2388a0c5cda38a632ae5ea6867a0dcf 752 Pfam PF01568 Molydopterin dinucleotide binding domain 625 745 3.3E-26 T 29-03-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 AM354_RS20955 77188b9462b86af7a15de54a1cf11da7 292 SUPERFAMILY SSF111331 8 289 1.15E-92 T 29-03-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain AM354_RS20955 77188b9462b86af7a15de54a1cf11da7 292 Gene3D G3DSA:3.40.50.10330 1 141 1.8E-35 T 29-03-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 AM354_RS20955 77188b9462b86af7a15de54a1cf11da7 292 Pfam PF01513 ATP-NAD kinase 8 271 8.3E-75 T 29-03-2018 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 AM354_RS20955 77188b9462b86af7a15de54a1cf11da7 292 Hamap MF_00361 NAD kinase [nadK]. 6 287 33.388 T 29-03-2018 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 AM354_RS20955 77188b9462b86af7a15de54a1cf11da7 292 Gene3D G3DSA:2.60.200.30 142 264 3.3E-40 T 29-03-2018 IPR017437 ATP-NAD kinase, PpnK-type, all-beta GO:0003951|GO:0008152|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 AM354_RS18910 4f370da0e7a09f733e4b8103d199196e 288 Gene3D G3DSA:1.10.10.60 59 121 2.0E-10 T 29-03-2018 AM354_RS18910 4f370da0e7a09f733e4b8103d199196e 288 Pfam PF12833 Helix-turn-helix domain 29 106 3.9E-19 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS18910 4f370da0e7a09f733e4b8103d199196e 288 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 59 101 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM354_RS18910 4f370da0e7a09f733e4b8103d199196e 288 Gene3D G3DSA:3.20.80.10 139 287 8.8E-8 T 29-03-2018 IPR011256 Regulatory factor, effector binding domain AM354_RS18910 4f370da0e7a09f733e4b8103d199196e 288 SUPERFAMILY SSF46689 7 56 2.11E-8 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS18910 4f370da0e7a09f733e4b8103d199196e 288 Gene3D G3DSA:1.10.10.60 1 58 3.6E-13 T 29-03-2018 AM354_RS18910 4f370da0e7a09f733e4b8103d199196e 288 SMART SM00342 22 105 4.3E-30 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS18910 4f370da0e7a09f733e4b8103d199196e 288 SUPERFAMILY SSF46689 58 108 6.72E-11 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS18910 4f370da0e7a09f733e4b8103d199196e 288 SUPERFAMILY SSF55136 166 269 6.28E-6 T 29-03-2018 AM354_RS00005 00eb3474ebf990310f50cdf77430b950 476 Gene3D G3DSA:1.10.287.460 392 476 1.1E-9 T 29-03-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 AM354_RS00005 00eb3474ebf990310f50cdf77430b950 476 Gene3D G3DSA:1.10.287.620 56 126 4.8E-4 T 29-03-2018 AM354_RS25945 4e414862a3b9dc939c68124e235f5a9e 272 PIRSF PIRSF018249 1 271 1.6E-87 T 29-03-2018 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted GO:0008168 AM354_RS25945 4e414862a3b9dc939c68124e235f5a9e 272 Pfam PF13847 Methyltransferase domain 88 200 5.7E-14 T 29-03-2018 IPR025714 Methyltransferase domain AM354_RS25945 4e414862a3b9dc939c68124e235f5a9e 272 Gene3D G3DSA:3.40.50.150 1 272 1.3E-53 T 29-03-2018 AM354_RS25945 4e414862a3b9dc939c68124e235f5a9e 272 SUPERFAMILY SSF53335 4 255 1.14E-43 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS11960 75d941ec7f67c9341a5d2475c607a116 294 PIRSF PIRSF004654 1 292 6.9E-117 T 29-03-2018 IPR023605 Lipoprotein NlpI AM354_RS11960 75d941ec7f67c9341a5d2475c607a116 294 SUPERFAMILY SSF48452 27 283 1.61E-75 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS11960 75d941ec7f67c9341a5d2475c607a116 294 Gene3D G3DSA:1.25.40.10 20 294 2.1E-49 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS11960 75d941ec7f67c9341a5d2475c607a116 294 SMART SM00028 96 129 2.0E-4 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AM354_RS11960 75d941ec7f67c9341a5d2475c607a116 294 SMART SM00028 62 95 0.0033 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AM354_RS11960 75d941ec7f67c9341a5d2475c607a116 294 Pfam PF07719 Tetratricopeptide repeat 96 129 5.3E-5 T 29-03-2018 IPR013105 Tetratricopeptide repeat 2 AM354_RS11960 75d941ec7f67c9341a5d2475c607a116 294 Pfam PF13181 Tetratricopeptide repeat 62 94 0.033 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AM354_RS00475 dae67a796bf4635419e0c9e8240485ce 333 SUPERFAMILY SSF52540 25 263 8.23E-74 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS00475 dae67a796bf4635419e0c9e8240485ce 333 ProSitePatterns PS00211 ABC transporters family signature. 164 178 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS00475 dae67a796bf4635419e0c9e8240485ce 333 Pfam PF00005 ABC transporter 40 191 6.0E-31 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS00475 dae67a796bf4635419e0c9e8240485ce 333 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 243 310 1.3E-19 T 29-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AM354_RS00475 dae67a796bf4635419e0c9e8240485ce 333 SMART SM00382 48 241 4.1E-18 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS00475 dae67a796bf4635419e0c9e8240485ce 333 Gene3D G3DSA:3.40.50.300 7 330 4.6E-80 T 29-03-2018 AM354_RS00475 dae67a796bf4635419e0c9e8240485ce 333 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 241 328 4.2E-29 T 29-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AM354_RS06390 534c687293d7b9ac89494177571f4f9c 370 SUPERFAMILY SSF52540 109 356 5.21E-56 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS06390 534c687293d7b9ac89494177571f4f9c 370 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 107 350 1.1E-98 T 29-03-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 AM354_RS06390 534c687293d7b9ac89494177571f4f9c 370 ProSitePatterns PS01215 Mrp family signature. 214 230 - T 29-03-2018 IPR000808 Mrp, conserved site GO:0005524 AM354_RS06390 534c687293d7b9ac89494177571f4f9c 370 Hamap MF_02040 Iron-sulfur cluster carrier protein. 102 351 37.127 T 29-03-2018 IPR019591 Mrp/NBP35 ATP-binding protein AM354_RS06390 534c687293d7b9ac89494177571f4f9c 370 Gene3D G3DSA:3.40.50.300 107 360 1.0E-60 T 29-03-2018 AM354_RS19755 9363278dddac08bf49a04b6dc8cd3c71 67 Pfam PF15959 Domain of unknown function (DUF4762) 1 60 4.8E-18 T 29-03-2018 IPR031882 Protein of unknown function DUF4762 AM354_RS07380 ac21cc5290dd8dcb96d7ea400d62fc88 266 Gene3D G3DSA:3.40.50.1820 1 263 7.4E-42 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS07380 ac21cc5290dd8dcb96d7ea400d62fc88 266 Pfam PF00561 alpha/beta hydrolase fold 16 117 1.9E-17 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS07380 ac21cc5290dd8dcb96d7ea400d62fc88 266 SUPERFAMILY SSF53474 4 258 6.87E-56 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS07380 ac21cc5290dd8dcb96d7ea400d62fc88 266 PRINTS PR00412 Epoxide hydrolase signature 98 111 1.0E-9 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AM354_RS07380 ac21cc5290dd8dcb96d7ea400d62fc88 266 PRINTS PR00412 Epoxide hydrolase signature 234 256 1.0E-9 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AM354_RS07380 ac21cc5290dd8dcb96d7ea400d62fc88 266 PRINTS PR00412 Epoxide hydrolase signature 39 54 1.0E-9 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AM354_RS07380 ac21cc5290dd8dcb96d7ea400d62fc88 266 PRINTS PR00111 Alpha/beta hydrolase fold signature 84 97 4.3E-9 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS07380 ac21cc5290dd8dcb96d7ea400d62fc88 266 PRINTS PR00111 Alpha/beta hydrolase fold signature 98 111 4.3E-9 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS07380 ac21cc5290dd8dcb96d7ea400d62fc88 266 PRINTS PR00111 Alpha/beta hydrolase fold signature 204 218 4.3E-9 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS07380 ac21cc5290dd8dcb96d7ea400d62fc88 266 PRINTS PR00111 Alpha/beta hydrolase fold signature 39 54 4.3E-9 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS25390 5d0d3eb25cc638c402d33d75b8b923f0 89 Pfam PF01313 Bacterial export proteins, family 3 6 77 2.7E-30 T 29-03-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AM354_RS25390 5d0d3eb25cc638c402d33d75b8b923f0 89 PIRSF PIRSF004669 1 89 1.0E-32 T 29-03-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AM354_RS25390 5d0d3eb25cc638c402d33d75b8b923f0 89 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 1 88 1.1E-33 T 29-03-2018 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 AM354_RS25390 5d0d3eb25cc638c402d33d75b8b923f0 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 1.5E-23 T 29-03-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AM354_RS25390 5d0d3eb25cc638c402d33d75b8b923f0 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 1.5E-23 T 29-03-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AM354_RS25390 5d0d3eb25cc638c402d33d75b8b923f0 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 1.5E-23 T 29-03-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AM354_RS11025 71a5dec798b0eff23c127d5ec215e37f 477 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 77 209 4.5E-16 T 29-03-2018 AM354_RS13195 09f62795944fdfc63a3488c34385ddf2 292 Pfam PF02253 Phospholipase A1 44 288 1.9E-94 T 29-03-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AM354_RS13195 09f62795944fdfc63a3488c34385ddf2 292 Gene3D G3DSA:2.40.230.10 33 292 1.7E-96 T 29-03-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AM354_RS13195 09f62795944fdfc63a3488c34385ddf2 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 156 170 1.1E-82 T 29-03-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AM354_RS13195 09f62795944fdfc63a3488c34385ddf2 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 206 224 1.1E-82 T 29-03-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AM354_RS13195 09f62795944fdfc63a3488c34385ddf2 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 261 281 1.1E-82 T 29-03-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AM354_RS13195 09f62795944fdfc63a3488c34385ddf2 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 126 145 1.1E-82 T 29-03-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AM354_RS13195 09f62795944fdfc63a3488c34385ddf2 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 239 256 1.1E-82 T 29-03-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AM354_RS13195 09f62795944fdfc63a3488c34385ddf2 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 103 119 1.1E-82 T 29-03-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AM354_RS13195 09f62795944fdfc63a3488c34385ddf2 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 81 98 1.1E-82 T 29-03-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AM354_RS13195 09f62795944fdfc63a3488c34385ddf2 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 171 189 1.1E-82 T 29-03-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AM354_RS13195 09f62795944fdfc63a3488c34385ddf2 292 SUPERFAMILY SSF56931 40 291 6.93E-91 T 29-03-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AM354_RS09035 6693ae42c740c0f174d55659488a397f 346 Gene3D G3DSA:3.40.50.1100 30 140 1.1E-20 T 29-03-2018 AM354_RS09035 6693ae42c740c0f174d55659488a397f 346 SUPERFAMILY SSF53686 21 333 1.24E-69 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM354_RS09035 6693ae42c740c0f174d55659488a397f 346 Gene3D G3DSA:3.40.50.1100 141 329 1.1E-39 T 29-03-2018 AM354_RS09035 6693ae42c740c0f174d55659488a397f 346 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 23 314 3.0E-44 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM354_RS02870 2a039dd74202f911e170976f86a39532 181 SUPERFAMILY SSF52540 6 162 2.25E-16 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS02870 2a039dd74202f911e170976f86a39532 181 Gene3D G3DSA:3.40.50.300 5 175 4.2E-14 T 29-03-2018 AM354_RS02870 2a039dd74202f911e170976f86a39532 181 Pfam PF13521 AAA domain 7 170 2.2E-41 T 29-03-2018 AM354_RS06330 789c05541b2d51c2bed6ff74c75b1123 373 Gene3D G3DSA:3.40.50.2000 216 373 1.0E-17 T 29-03-2018 AM354_RS06330 789c05541b2d51c2bed6ff74c75b1123 373 Pfam PF00534 Glycosyl transferases group 1 220 333 2.2E-11 T 29-03-2018 IPR001296 Glycosyl transferase, family 1 AM354_RS06330 789c05541b2d51c2bed6ff74c75b1123 373 Gene3D G3DSA:3.40.50.2000 4 215 6.9E-15 T 29-03-2018 AM354_RS06330 789c05541b2d51c2bed6ff74c75b1123 373 Pfam PF13439 Glycosyltransferase Family 4 15 208 1.4E-16 T 29-03-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193 AM354_RS06330 789c05541b2d51c2bed6ff74c75b1123 373 SUPERFAMILY SSF53756 1 372 3.49E-53 T 29-03-2018 AM354_RS15170 2cc3464a39c93c3d6ec1889e08ffb0ac 131 Gene3D G3DSA:1.10.10.60 30 74 4.3E-15 T 29-03-2018 AM354_RS15170 2cc3464a39c93c3d6ec1889e08ffb0ac 131 Gene3D G3DSA:1.10.10.60 76 130 1.8E-17 T 29-03-2018 AM354_RS15170 2cc3464a39c93c3d6ec1889e08ffb0ac 131 SUPERFAMILY SSF46689 30 121 1.11E-21 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS15170 2cc3464a39c93c3d6ec1889e08ffb0ac 131 Pfam PF08765 Mor transcription activator family 29 130 3.4E-29 T 29-03-2018 IPR014875 Mor transcription activator AM354_RS23030 c500467fbc41c319abd9631bbc603b95 183 SUPERFAMILY SSF56300 1 174 4.25E-39 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like AM354_RS23030 c500467fbc41c319abd9631bbc603b95 183 TIGRFAM TIGR00040 yfcE: phosphodiesterase, MJ0936 family 1 166 1.1E-41 T 29-03-2018 IPR000979 Phosphodiesterase MJ0936/Vps29 Reactome: R-HSA-3238698 AM354_RS23030 c500467fbc41c319abd9631bbc603b95 183 Gene3D G3DSA:3.60.21.10 1 179 4.1E-30 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like AM354_RS23030 c500467fbc41c319abd9631bbc603b95 183 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 1 161 5.5E-25 T 29-03-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 AM354_RS23030 c500467fbc41c319abd9631bbc603b95 183 ProSitePatterns PS01269 Uncharacterized protein family UPF0025 signature. 120 144 - T 29-03-2018 IPR020935 Phosphodiesterase YfcE, conserved site AM354_RS15715 659ce8326059a95b33588c3cf738aff0 336 Gene3D G3DSA:3.30.70.1070 254 320 6.3E-4 T 29-03-2018 IPR007730 Sporulation-related domain GO:0042834 AM354_RS15715 659ce8326059a95b33588c3cf738aff0 336 Pfam PF05036 Sporulation related domain 252 325 3.1E-11 T 29-03-2018 IPR007730 Sporulation-related domain GO:0042834 AM354_RS15715 659ce8326059a95b33588c3cf738aff0 336 Hamap MF_02021 Cell division protein DamX [damX]. 1 336 27.13 T 29-03-2018 IPR032899 Cell division protein DamX GO:0030428|GO:0032506 AM354_RS15715 659ce8326059a95b33588c3cf738aff0 336 SUPERFAMILY SSF110997 251 316 1.96E-5 T 29-03-2018 IPR007730 Sporulation-related domain GO:0042834 AM354_RS23985 75ae593bb22c6bfda2a953f6f87bb03e 428 Gene3D G3DSA:1.10.3470.10 106 410 5.1E-44 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS23985 75ae593bb22c6bfda2a953f6f87bb03e 428 Pfam PF02653 Branched-chain amino acid transport system / permease component 120 405 2.4E-48 T 29-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AM354_RS23985 75ae593bb22c6bfda2a953f6f87bb03e 428 Pfam PF11862 Domain of unknown function (DUF3382) 15 112 3.4E-19 T 29-03-2018 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal AM354_RS15970 793e9660511a3832eb2c3783b6a2f9bb 124 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 124 3.2E-70 T 29-03-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS15970 793e9660511a3832eb2c3783b6a2f9bb 124 Gene3D G3DSA:2.40.50.140 1 124 7.5E-64 T 29-03-2018 AM354_RS15970 793e9660511a3832eb2c3783b6a2f9bb 124 Pfam PF00164 Ribosomal protein S12/S23 13 123 6.7E-43 T 29-03-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS15970 793e9660511a3832eb2c3783b6a2f9bb 124 PRINTS PR01034 Ribosomal protein S12 signature 110 122 3.5E-60 T 29-03-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS15970 793e9660511a3832eb2c3783b6a2f9bb 124 PRINTS PR01034 Ribosomal protein S12 signature 94 110 3.5E-60 T 29-03-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS15970 793e9660511a3832eb2c3783b6a2f9bb 124 PRINTS PR01034 Ribosomal protein S12 signature 58 77 3.5E-60 T 29-03-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS15970 793e9660511a3832eb2c3783b6a2f9bb 124 PRINTS PR01034 Ribosomal protein S12 signature 27 42 3.5E-60 T 29-03-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS15970 793e9660511a3832eb2c3783b6a2f9bb 124 PRINTS PR01034 Ribosomal protein S12 signature 77 94 3.5E-60 T 29-03-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS15970 793e9660511a3832eb2c3783b6a2f9bb 124 PRINTS PR01034 Ribosomal protein S12 signature 42 57 3.5E-60 T 29-03-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS15970 793e9660511a3832eb2c3783b6a2f9bb 124 PIRSF PIRSF002133 1 124 3.3E-54 T 29-03-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS15970 793e9660511a3832eb2c3783b6a2f9bb 124 SUPERFAMILY SSF50249 3 123 8.57E-52 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS15970 793e9660511a3832eb2c3783b6a2f9bb 124 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 29-03-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS15970 793e9660511a3832eb2c3783b6a2f9bb 124 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 38.443 T 29-03-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS22740 d84bb7d4effaac14174a0ee24c5c5279 183 ProSitePatterns PS00194 Thioredoxin family active site. 72 90 - T 29-03-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AM354_RS22740 d84bb7d4effaac14174a0ee24c5c5279 183 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 6 178 1.6E-74 T 29-03-2018 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 AM354_RS22740 d84bb7d4effaac14174a0ee24c5c5279 183 Gene3D G3DSA:3.40.30.10 23 180 7.6E-28 T 29-03-2018 AM354_RS22740 d84bb7d4effaac14174a0ee24c5c5279 183 SUPERFAMILY SSF52833 46 178 2.87E-38 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS22740 d84bb7d4effaac14174a0ee24c5c5279 183 Pfam PF08534 Redoxin 42 166 3.6E-24 T 29-03-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 AM354_RS23350 82c350dcaa6f1c5066271444bc59cfe9 192 SUPERFAMILY SSF48498 90 185 3.34E-13 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AM354_RS23350 82c350dcaa6f1c5066271444bc59cfe9 192 Gene3D G3DSA:1.10.10.60 4 57 2.5E-15 T 29-03-2018 AM354_RS23350 82c350dcaa6f1c5066271444bc59cfe9 192 Gene3D G3DSA:1.10.357.10 58 186 9.5E-22 T 29-03-2018 AM354_RS23350 82c350dcaa6f1c5066271444bc59cfe9 192 SUPERFAMILY SSF46689 6 74 1.74E-17 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS23350 82c350dcaa6f1c5066271444bc59cfe9 192 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 59 9.3E-15 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS23350 82c350dcaa6f1c5066271444bc59cfe9 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 58 5.1E-8 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS23350 82c350dcaa6f1c5066271444bc59cfe9 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 14 27 5.1E-8 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS00030 08fc57893f88ff7ed17c5bb1d779eeeb 192 Gene3D G3DSA:3.40.50.850 3 192 1.8E-43 T 29-03-2018 AM354_RS00030 08fc57893f88ff7ed17c5bb1d779eeeb 192 SUPERFAMILY SSF52499 4 191 4.58E-49 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM354_RS00030 08fc57893f88ff7ed17c5bb1d779eeeb 192 Pfam PF00857 Isochorismatase family 9 184 7.4E-38 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM354_RS25115 e9ed58c1a0cf007ffb576c2f753109c1 1211 Gene3D G3DSA:3.40.50.300 144 528 5.3E-8 T 29-03-2018 AM354_RS25115 e9ed58c1a0cf007ffb576c2f753109c1 1211 Pfam PF06744 Type VI secretion protein IcmF C-terminal 965 1165 4.6E-56 T 29-03-2018 IPR010623 Type VI secretion system IcmF, C-terminal AM354_RS25115 e9ed58c1a0cf007ffb576c2f753109c1 1211 SUPERFAMILY SSF52540 138 309 5.2E-10 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS25115 e9ed58c1a0cf007ffb576c2f753109c1 1211 Pfam PF06761 Intracellular multiplication and human macrophage-killing 536 840 3.3E-86 T 29-03-2018 IPR009612 ImcF-related AM354_RS25115 e9ed58c1a0cf007ffb576c2f753109c1 1211 Pfam PF14331 ImcF-related N-terminal domain 210 484 3.9E-99 T 29-03-2018 IPR025743 ImcF-related, N-terminal domain AM354_RS25115 e9ed58c1a0cf007ffb576c2f753109c1 1211 TIGRFAM TIGR03348 VI_IcmF: type VI secretion protein IcmF 15 1209 0.0 T 29-03-2018 IPR017731 Type VI secretion system, IcmF AM354_RS02255 ba0d80538cb54030bbdf2a7244fd706d 98 Pfam PF07045 Domain of unknown function (DUF1330) 2 94 5.0E-32 T 29-03-2018 IPR010753 Domain of unknown function DUF1330 AM354_RS02255 ba0d80538cb54030bbdf2a7244fd706d 98 SUPERFAMILY SSF54909 1 94 2.68E-28 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel AM354_RS02255 ba0d80538cb54030bbdf2a7244fd706d 98 Gene3D G3DSA:3.30.70.100 1 96 9.3E-27 T 29-03-2018 AM354_RS21165 0376d88d165b7db3cedfcd1bf5388c31 268 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 80 248 3.8E-14 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS21165 0376d88d165b7db3cedfcd1bf5388c31 268 Gene3D G3DSA:1.10.3720.10 8 259 5.1E-34 T 29-03-2018 AM354_RS21165 0376d88d165b7db3cedfcd1bf5388c31 268 SUPERFAMILY SSF161098 8 256 1.24E-46 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS18225 8b35c913ff85512b22756b554e702d0e 196 Pfam PF11198 Protein of unknown function (DUF2857) 10 181 8.0E-67 T 29-03-2018 IPR021364 Protein of unknown function DUF2857 AM354_RS18225 8b35c913ff85512b22756b554e702d0e 196 Gene3D G3DSA:1.10.4000.10 2 96 6.8E-5 T 29-03-2018 AM354_RS05865 d8aa124cb15318debdf0f01d43977958 278 Gene3D G3DSA:3.40.80.10 14 191 8.4E-44 T 29-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 AM354_RS05865 d8aa124cb15318debdf0f01d43977958 278 SUPERFAMILY SSF47090 201 274 1.26E-16 T 29-03-2018 IPR002477 Peptidoglycan binding-like AM354_RS05865 d8aa124cb15318debdf0f01d43977958 278 SUPERFAMILY SSF55846 38 195 1.02E-52 T 29-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 AM354_RS05865 d8aa124cb15318debdf0f01d43977958 278 Gene3D G3DSA:1.10.101.10 194 277 6.0E-5 T 29-03-2018 IPR002477 Peptidoglycan binding-like AM354_RS05865 d8aa124cb15318debdf0f01d43977958 278 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 43 180 8.2E-28 T 29-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 AM354_RS05865 d8aa124cb15318debdf0f01d43977958 278 SMART SM00644 33 179 4.4E-29 T 29-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 AM354_RS16090 3891b7ca1d3c218b79aba8efafd1addf 166 Pfam PF03719 Ribosomal protein S5, C-terminal domain 87 157 1.3E-30 T 29-03-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 AM354_RS16090 3891b7ca1d3c218b79aba8efafd1addf 166 Pfam PF00333 Ribosomal protein S5, N-terminal domain 11 74 2.3E-29 T 29-03-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 AM354_RS16090 3891b7ca1d3c218b79aba8efafd1addf 166 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 10 162 4.1E-71 T 29-03-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 AM354_RS16090 3891b7ca1d3c218b79aba8efafd1addf 166 Gene3D G3DSA:3.30.230.10 76 166 3.4E-34 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AM354_RS16090 3891b7ca1d3c218b79aba8efafd1addf 166 Gene3D G3DSA:3.30.160.20 10 72 1.4E-27 T 29-03-2018 AM354_RS16090 3891b7ca1d3c218b79aba8efafd1addf 166 ProSitePatterns PS00585 Ribosomal protein S5 signature. 28 60 - T 29-03-2018 IPR018192 Ribosomal protein S5, N-terminal, conserved site AM354_RS16090 3891b7ca1d3c218b79aba8efafd1addf 166 SUPERFAMILY SSF54768 9 75 7.32E-24 T 29-03-2018 AM354_RS16090 3891b7ca1d3c218b79aba8efafd1addf 166 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 163 34.576 T 29-03-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 AM354_RS16090 3891b7ca1d3c218b79aba8efafd1addf 166 SUPERFAMILY SSF54211 79 159 1.72E-27 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM354_RS04995 19fe3445a39f0bfc0df0f6dcd0d78d48 125 Pfam PF13984 MsyB protein 3 125 9.2E-62 T 29-03-2018 IPR025729 MsyB protein AM354_RS20125 eb54e97b9341b36ca4fb26dfd365b4d4 412 SUPERFAMILY SSF103473 12 403 9.29E-82 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS20125 eb54e97b9341b36ca4fb26dfd365b4d4 412 ProSitePatterns PS00217 Sugar transport proteins signature 2. 112 137 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM354_RS20125 eb54e97b9341b36ca4fb26dfd365b4d4 412 Gene3D G3DSA:1.20.1250.20 204 403 1.3E-28 T 29-03-2018 AM354_RS20125 eb54e97b9341b36ca4fb26dfd365b4d4 412 Pfam PF07690 Major Facilitator Superfamily 23 306 1.8E-44 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS20125 eb54e97b9341b36ca4fb26dfd365b4d4 412 Gene3D G3DSA:1.20.1250.20 14 201 8.8E-34 T 29-03-2018 AM354_RS06560 6a3de6443bd0326b4a2534e5c6078b0d 298 Pfam PF03466 LysR substrate binding domain 88 292 6.4E-45 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS06560 6a3de6443bd0326b4a2534e5c6078b0d 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 7.8E-19 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS06560 6a3de6443bd0326b4a2534e5c6078b0d 298 Gene3D G3DSA:1.10.10.10 4 87 3.1E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS06560 6a3de6443bd0326b4a2534e5c6078b0d 298 SUPERFAMILY SSF53850 88 292 9.23E-47 T 29-03-2018 AM354_RS06560 6a3de6443bd0326b4a2534e5c6078b0d 298 Gene3D G3DSA:3.40.190.10 89 178 5.1E-14 T 29-03-2018 AM354_RS06560 6a3de6443bd0326b4a2534e5c6078b0d 298 SUPERFAMILY SSF46785 7 112 1.15E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS06560 6a3de6443bd0326b4a2534e5c6078b0d 298 Gene3D G3DSA:3.40.190.10 179 264 1.0E-28 T 29-03-2018 AM354_RS06380 814ac31e193b08d8df0a6a08108341fc 213 Hamap MF_00551 Uridine kinase [udk]. 5 213 41.011 T 29-03-2018 IPR026008 Uridine kinase GO:0004849|GO:0005524|GO:0016773 KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 AM354_RS06380 814ac31e193b08d8df0a6a08108341fc 213 PRINTS PR00988 Uridine kinase signature 157 168 1.9E-38 T 29-03-2018 AM354_RS06380 814ac31e193b08d8df0a6a08108341fc 213 PRINTS PR00988 Uridine kinase signature 87 102 1.9E-38 T 29-03-2018 AM354_RS06380 814ac31e193b08d8df0a6a08108341fc 213 PRINTS PR00988 Uridine kinase signature 8 25 1.9E-38 T 29-03-2018 AM354_RS06380 814ac31e193b08d8df0a6a08108341fc 213 PRINTS PR00988 Uridine kinase signature 143 153 1.9E-38 T 29-03-2018 AM354_RS06380 814ac31e193b08d8df0a6a08108341fc 213 PRINTS PR00988 Uridine kinase signature 179 192 1.9E-38 T 29-03-2018 AM354_RS06380 814ac31e193b08d8df0a6a08108341fc 213 PRINTS PR00988 Uridine kinase signature 42 53 1.9E-38 T 29-03-2018 AM354_RS06380 814ac31e193b08d8df0a6a08108341fc 213 Gene3D G3DSA:3.40.50.300 5 213 6.0E-55 T 29-03-2018 AM354_RS06380 814ac31e193b08d8df0a6a08108341fc 213 TIGRFAM TIGR00235 udk: uridine kinase 6 213 1.9E-95 T 29-03-2018 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193|Reactome: R-HSA-73614 AM354_RS06380 814ac31e193b08d8df0a6a08108341fc 213 SUPERFAMILY SSF52540 6 205 2.58E-50 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS06380 814ac31e193b08d8df0a6a08108341fc 213 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 10 199 5.2E-45 T 29-03-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0008152|GO:0016301 Reactome: R-HSA-73614 AM354_RS12755 79be670807ebb66ebbf60f15ba6a820c 234 Gene3D G3DSA:3.40.50.790 68 149 4.2E-35 T 29-03-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich AM354_RS12755 79be670807ebb66ebbf60f15ba6a820c 234 Gene3D G3DSA:3.30.190.20 150 228 8.8E-22 T 29-03-2018 AM354_RS12755 79be670807ebb66ebbf60f15ba6a820c 234 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 43.367 T 29-03-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 AM354_RS12755 79be670807ebb66ebbf60f15ba6a820c 234 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 227 2.1E-107 T 29-03-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 AM354_RS12755 79be670807ebb66ebbf60f15ba6a820c 234 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 29-03-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS12755 79be670807ebb66ebbf60f15ba6a820c 234 Pfam PF00687 Ribosomal protein L1p/L10e family 30 219 1.0E-51 T 29-03-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein AM354_RS12755 79be670807ebb66ebbf60f15ba6a820c 234 PIRSF PIRSF002155 1 227 1.1E-77 T 29-03-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM354_RS12755 79be670807ebb66ebbf60f15ba6a820c 234 SUPERFAMILY SSF56808 6 225 3.01E-83 T 29-03-2018 IPR023674 Ribosomal protein L1-like AM354_RS24335 00d130e74d1239df9fe2390ae348a902 247 Gene3D G3DSA:3.40.190.10 118 195 1.0E-7 T 29-03-2018 AM354_RS24335 00d130e74d1239df9fe2390ae348a902 247 Gene3D G3DSA:3.40.190.10 10 117 1.7E-11 T 29-03-2018 AM354_RS24335 00d130e74d1239df9fe2390ae348a902 247 SUPERFAMILY SSF53850 18 231 2.92E-30 T 29-03-2018 AM354_RS24335 00d130e74d1239df9fe2390ae348a902 247 SMART SM00062 17 236 4.4E-23 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM354_RS24335 00d130e74d1239df9fe2390ae348a902 247 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 19 227 5.0E-23 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM354_RS19790 6c99e6c305ea104823aece5b79d356b6 417 SMART SM00825 Beta-ketoacyl synthase 7 417 3.9E-9 T 29-03-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AM354_RS19790 6c99e6c305ea104823aece5b79d356b6 417 Gene3D G3DSA:3.40.47.10 1 261 1.3E-43 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS19790 6c99e6c305ea104823aece5b79d356b6 417 Gene3D G3DSA:3.40.47.10 266 417 2.3E-44 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS19790 6c99e6c305ea104823aece5b79d356b6 417 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 158 174 - T 29-03-2018 IPR018201 Beta-ketoacyl synthase, active site AM354_RS19790 6c99e6c305ea104823aece5b79d356b6 417 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 258 372 4.6E-33 T 29-03-2018 IPR014031 Beta-ketoacyl synthase, C-terminal AM354_RS19790 6c99e6c305ea104823aece5b79d356b6 417 SUPERFAMILY SSF53901 220 414 6.11E-62 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS19790 6c99e6c305ea104823aece5b79d356b6 417 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 5 250 6.5E-31 T 29-03-2018 IPR014030 Beta-ketoacyl synthase, N-terminal AM354_RS19790 6c99e6c305ea104823aece5b79d356b6 417 SUPERFAMILY SSF53901 5 257 3.84E-41 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS08615 7812a3040cc0c8a066c1346c8248ef6b 555 Pfam PF02629 CoA binding domain 194 287 1.6E-9 T 29-03-2018 IPR003781 CoA-binding GO:0048037 AM354_RS08615 7812a3040cc0c8a066c1346c8248ef6b 555 Pfam PF00549 CoA-ligase 336 491 1.2E-47 T 29-03-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AM354_RS08615 7812a3040cc0c8a066c1346c8248ef6b 555 Gene3D G3DSA:3.40.50.261 171 318 4.4E-24 T 29-03-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AM354_RS08615 7812a3040cc0c8a066c1346c8248ef6b 555 Gene3D G3DSA:3.40.50.261 319 503 9.1E-8 T 29-03-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AM354_RS08615 7812a3040cc0c8a066c1346c8248ef6b 555 Gene3D G3DSA:3.40.50.720 65 170 3.1E-6 T 29-03-2018 AM354_RS08615 7812a3040cc0c8a066c1346c8248ef6b 555 SUPERFAMILY SSF52210 187 316 1.96E-16 T 29-03-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AM354_RS08615 7812a3040cc0c8a066c1346c8248ef6b 555 SUPERFAMILY SSF52210 327 492 1.57E-7 T 29-03-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AM354_RS25525 62287a9abf1eecddd6dff22b321a6f98 250 Gene3D G3DSA:3.40.50.300 1 250 2.4E-79 T 29-03-2018 AM354_RS25525 62287a9abf1eecddd6dff22b321a6f98 250 SUPERFAMILY SSF52540 4 243 7.43E-80 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS25525 62287a9abf1eecddd6dff22b321a6f98 250 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS25525 62287a9abf1eecddd6dff22b321a6f98 250 Pfam PF00005 ABC transporter 19 173 6.4E-35 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS25525 62287a9abf1eecddd6dff22b321a6f98 250 PIRSF PIRSF039085 1 249 1.0E-114 T 29-03-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AM354_RS25525 62287a9abf1eecddd6dff22b321a6f98 250 SMART SM00382 28 221 6.2E-21 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS07760 e35be7ba2de72f29ac1ce69c93ad236f 160 Pfam PF01161 Phosphatidylethanolamine-binding protein 27 159 2.4E-38 T 29-03-2018 IPR008914 Phosphatidylethanolamine-binding protein AM354_RS07760 e35be7ba2de72f29ac1ce69c93ad236f 160 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 21 157 4.1E-52 T 29-03-2018 IPR005247 YbhB/YbcL AM354_RS07760 e35be7ba2de72f29ac1ce69c93ad236f 160 Gene3D G3DSA:3.90.280.10 1 160 7.7E-51 T 29-03-2018 IPR008914 Phosphatidylethanolamine-binding protein AM354_RS07760 e35be7ba2de72f29ac1ce69c93ad236f 160 SUPERFAMILY SSF49777 3 160 3.01E-53 T 29-03-2018 IPR008914 Phosphatidylethanolamine-binding protein AM354_RS04215 b7d7d98c2c451bd8a2fdc3205a4ab51f 223 SUPERFAMILY SSF52172 1 173 2.42E-38 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS04215 b7d7d98c2c451bd8a2fdc3205a4ab51f 223 SMART SM00448 1 112 3.3E-38 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS04215 b7d7d98c2c451bd8a2fdc3205a4ab51f 223 Gene3D G3DSA:1.10.10.10 119 223 1.2E-25 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS04215 b7d7d98c2c451bd8a2fdc3205a4ab51f 223 SMART SM00862 145 220 4.3E-20 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS04215 b7d7d98c2c451bd8a2fdc3205a4ab51f 223 Gene3D G3DSA:3.40.50.2300 1 118 2.2E-34 T 29-03-2018 AM354_RS04215 b7d7d98c2c451bd8a2fdc3205a4ab51f 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 220 6.4E-20 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS04215 b7d7d98c2c451bd8a2fdc3205a4ab51f 223 Pfam PF00072 Response regulator receiver domain 3 112 1.7E-25 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS25675 43a016e4464ba993f5a73d8589ab9197 726 Pfam PF13614 AAA domain 540 655 1.5E-11 T 29-03-2018 IPR025669 AAA domain AM354_RS25675 43a016e4464ba993f5a73d8589ab9197 726 SUPERFAMILY SSF52540 527 702 7.77E-37 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS25675 43a016e4464ba993f5a73d8589ab9197 726 Pfam PF13807 G-rich domain on putative tyrosine kinase 367 448 4.9E-32 T 29-03-2018 IPR032807 Tyrosine kinase, G-rich domain AM354_RS25675 43a016e4464ba993f5a73d8589ab9197 726 Pfam PF02706 Chain length determinant protein 21 106 7.2E-14 T 29-03-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 AM354_RS25675 43a016e4464ba993f5a73d8589ab9197 726 TIGRFAM TIGR01007 eps_fam: capsular exopolysaccharide family 509 712 5.3E-50 T 29-03-2018 IPR005702 Exopolysaccharide synthesis protein GO:0045226 AM354_RS25675 43a016e4464ba993f5a73d8589ab9197 726 Gene3D G3DSA:3.40.50.300 526 713 6.7E-32 T 29-03-2018 AM354_RS25675 43a016e4464ba993f5a73d8589ab9197 726 Gene3D G3DSA:3.30.1890.10 45 423 1.3E-65 T 29-03-2018 AM354_RS08370 9c201dd23d7b17517e4a60b58bd0592b 370 Pfam PF01098 Cell cycle protein 22 364 8.2E-123 T 29-03-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 AM354_RS08370 9c201dd23d7b17517e4a60b58bd0592b 370 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 321 345 - T 29-03-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0007049|GO:0016021 AM354_RS08370 9c201dd23d7b17517e4a60b58bd0592b 370 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 17 364 1.5E-136 T 29-03-2018 IPR011923 Rod shape-determining protein RodA GO:0008360|GO:0016021 AM354_RS25150 9e70b2803db37ae21f5881295afe93ac 355 Gene3D G3DSA:2.160.10.20 167 242 2.6E-14 T 29-03-2018 AM354_RS25150 9e70b2803db37ae21f5881295afe93ac 355 Gene3D G3DSA:2.160.10.20 243 331 2.4E-15 T 29-03-2018 AM354_RS25150 9e70b2803db37ae21f5881295afe93ac 355 SUPERFAMILY SSF141571 156 319 1.7E-31 T 29-03-2018 AM354_RS25150 9e70b2803db37ae21f5881295afe93ac 355 SUPERFAMILY SSF141571 11 178 2.55E-31 T 29-03-2018 AM354_RS25150 9e70b2803db37ae21f5881295afe93ac 355 Pfam PF00805 Pentapeptide repeats (8 copies) 271 309 2.0E-6 T 29-03-2018 IPR001646 Pentapeptide repeat AM354_RS25150 9e70b2803db37ae21f5881295afe93ac 355 Gene3D G3DSA:2.160.10.20 8 93 1.4E-14 T 29-03-2018 AM354_RS25150 9e70b2803db37ae21f5881295afe93ac 355 Gene3D G3DSA:2.160.10.20 94 166 1.9E-13 T 29-03-2018 AM354_RS25150 9e70b2803db37ae21f5881295afe93ac 355 Pfam PF13599 Pentapeptide repeats (9 copies) 189 247 3.8E-8 T 29-03-2018 IPR001646 Pentapeptide repeat AM354_RS25150 9e70b2803db37ae21f5881295afe93ac 355 Pfam PF13599 Pentapeptide repeats (9 copies) 22 78 1.8E-10 T 29-03-2018 IPR001646 Pentapeptide repeat AM354_RS25150 9e70b2803db37ae21f5881295afe93ac 355 Pfam PF13599 Pentapeptide repeats (9 copies) 128 183 6.9E-7 T 29-03-2018 IPR001646 Pentapeptide repeat AM354_RS11085 e1640e1a8b68cd0570d3a4db09ad7e2a 61 SUPERFAMILY SSF69047 1 58 6.41E-15 T 29-03-2018 IPR008462 CsbD-like domain AM354_RS11085 e1640e1a8b68cd0570d3a4db09ad7e2a 61 Gene3D G3DSA:1.10.1470.10 1 60 7.8E-8 T 29-03-2018 IPR008462 CsbD-like domain AM354_RS23460 f1810e57bf9721f53c5ad765dac83fee 500 SUPERFAMILY SSF49464 4 80 5.49E-6 T 29-03-2018 IPR008969 Carboxypeptidase-like, regulatory domain AM354_RS23460 f1810e57bf9721f53c5ad765dac83fee 500 Pfam PF08400 Prophage tail fibre N-terminal 2 131 1.0E-28 T 29-03-2018 IPR013609 Bacteriophage 933W, L0121, tail fibre, N-terminal AM354_RS23460 f1810e57bf9721f53c5ad765dac83fee 500 Gene3D G3DSA:2.60.40.1120 3 143 1.2E-5 T 29-03-2018 AM354_RS18030 88fa4170c534547a70e76236078beed8 140 Pfam PF02472 Biopolymer transport protein ExbD/TolR 14 133 1.1E-31 T 29-03-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 AM354_RS18030 88fa4170c534547a70e76236078beed8 140 TIGRFAM TIGR02803 ExbD_1: TonB system transport protein ExbD 16 136 1.4E-65 T 29-03-2018 IPR014170 TonB system transport protein ExbD type-1 GO:0006810|GO:0016020 AM354_RS15340 cbd5517204f1f8dbbda71333b9d7634f 480 SUPERFAMILY SSF103473 6 455 3.27E-74 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS15340 cbd5517204f1f8dbbda71333b9d7634f 480 ProSitePatterns PS00217 Sugar transport proteins signature 2. 111 136 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM354_RS15340 cbd5517204f1f8dbbda71333b9d7634f 480 Pfam PF00083 Sugar (and other) transporter 16 457 3.5E-104 T 29-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AM354_RS15340 cbd5517204f1f8dbbda71333b9d7634f 480 TIGRFAM TIGR00879 SP: MFS transporter, sugar porter (SP) family 4 453 2.0E-106 T 29-03-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 AM354_RS15340 cbd5517204f1f8dbbda71333b9d7634f 480 PRINTS PR00171 Sugar transporter signature 106 125 9.5E-23 T 29-03-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 AM354_RS15340 cbd5517204f1f8dbbda71333b9d7634f 480 PRINTS PR00171 Sugar transporter signature 353 374 9.5E-23 T 29-03-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 AM354_RS15340 cbd5517204f1f8dbbda71333b9d7634f 480 PRINTS PR00171 Sugar transporter signature 376 388 9.5E-23 T 29-03-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 AM354_RS15340 cbd5517204f1f8dbbda71333b9d7634f 480 PRINTS PR00171 Sugar transporter signature 268 278 9.5E-23 T 29-03-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 AM354_RS15340 cbd5517204f1f8dbbda71333b9d7634f 480 PRINTS PR00171 Sugar transporter signature 23 33 9.5E-23 T 29-03-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 AM354_RS15340 cbd5517204f1f8dbbda71333b9d7634f 480 Gene3D G3DSA:1.20.1250.20 241 466 1.1E-35 T 29-03-2018 AM354_RS15340 cbd5517204f1f8dbbda71333b9d7634f 480 Gene3D G3DSA:1.20.1250.20 4 240 6.4E-39 T 29-03-2018 AM354_RS26115 0795316f217823c48aa2d10cab6fa7ce 116 Gene3D G3DSA:2.40.10.10 1 116 6.9E-13 T 29-03-2018 AM354_RS26115 0795316f217823c48aa2d10cab6fa7ce 116 SUPERFAMILY SSF50494 50 114 1.7E-11 T 29-03-2018 IPR009003 Peptidase S1, PA clan AM354_RS22805 c0200354610ab2290f5e75df93930474 268 Pfam PF01925 Sulfite exporter TauE/SafE 14 249 1.5E-45 T 29-03-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 AM354_RS24020 403a21c587432e3a5ddd20ab1c86b68c 465 ProSitePatterns PS00216 Sugar transport proteins signature 1. 94 110 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM354_RS24020 403a21c587432e3a5ddd20ab1c86b68c 465 Pfam PF00083 Sugar (and other) transporter 34 465 2.0E-30 T 29-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AM354_RS24020 403a21c587432e3a5ddd20ab1c86b68c 465 Gene3D G3DSA:1.20.1250.20 259 465 4.8E-27 T 29-03-2018 AM354_RS24020 403a21c587432e3a5ddd20ab1c86b68c 465 SUPERFAMILY SSF103473 18 464 9.16E-67 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS24020 403a21c587432e3a5ddd20ab1c86b68c 465 ProSitePatterns PS00217 Sugar transport proteins signature 2. 136 161 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM354_RS24020 403a21c587432e3a5ddd20ab1c86b68c 465 Gene3D G3DSA:1.20.1250.20 24 235 6.3E-26 T 29-03-2018 AM354_RS20640 9923003d32fc4aacdcab9a2fd96c08fd 110 Pfam PF02656 Domain of unknown function (DUF202) 13 75 1.1E-14 T 29-03-2018 IPR003807 Domain of unknown function DUF202 AM354_RS02315 5e52c87bbe1fe29e84fda4c73d94362a 97 TIGRFAM TIGR02174 CXXU_selWTH: selT/selW/selH selenoprotein domain 7 78 4.4E-19 T 29-03-2018 IPR011893 Selenoprotein, Rdx type AM354_RS02315 5e52c87bbe1fe29e84fda4c73d94362a 97 Pfam PF10262 Rdx family 7 79 5.9E-30 T 29-03-2018 IPR011893 Selenoprotein, Rdx type AM354_RS02315 5e52c87bbe1fe29e84fda4c73d94362a 97 SUPERFAMILY SSF52833 5 88 1.05E-26 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS02315 5e52c87bbe1fe29e84fda4c73d94362a 97 Gene3D G3DSA:3.40.30.10 1 97 2.3E-37 T 29-03-2018 AM354_RS16765 f06ab7319a2c32d91c6f768238b5c022 67 Hamap MF_01546 Protein AaeX [aaeX]. 1 67 24.114 T 29-03-2018 IPR012451 Protein of unknown function DUF1656 AM354_RS16765 f06ab7319a2c32d91c6f768238b5c022 67 Pfam PF07869 Protein of unknown function (DUF1656) 7 61 2.8E-20 T 29-03-2018 IPR012451 Protein of unknown function DUF1656 AM354_RS00535 23f0bb86884d81236da96980976a7fe9 184 Gene3D G3DSA:2.60.120.10 10 184 1.2E-11 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS00535 23f0bb86884d81236da96980976a7fe9 184 SUPERFAMILY SSF51182 52 168 1.06E-6 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS03650 ec3a578499a38338f5bc90c1f9c899f0 447 PIRSF PIRSF005348 11 447 7.5E-160 T 29-03-2018 IPR004679 2-hydroxycarboxylate transporter GO:0008514|GO:0015711|GO:0016021 AM354_RS03650 ec3a578499a38338f5bc90c1f9c899f0 447 Pfam PF03390 2-hydroxycarboxylate transporter family 31 440 3.0E-144 T 29-03-2018 IPR004679 2-hydroxycarboxylate transporter GO:0008514|GO:0015711|GO:0016021 AM354_RS09520 45bd6c53cc93310421e3930df6adc547 127 SUPERFAMILY SSF54593 1 126 9.4E-24 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS09520 45bd6c53cc93310421e3930df6adc547 127 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 2 125 7.0E-11 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AM354_RS09520 45bd6c53cc93310421e3930df6adc547 127 Gene3D G3DSA:3.10.180.10 1 127 2.2E-21 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS03100 fa5e817c770ac223aa036301f6103c16 227 TIGRFAM TIGR01298 RNaseT: ribonuclease T 21 219 6.8E-107 T 29-03-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 AM354_RS03100 fa5e817c770ac223aa036301f6103c16 227 Gene3D G3DSA:3.30.420.10 21 223 5.3E-32 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS03100 fa5e817c770ac223aa036301f6103c16 227 SMART SM00479 29 214 3.4E-40 T 29-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AM354_RS03100 fa5e817c770ac223aa036301f6103c16 227 Pfam PF00929 Exonuclease 31 205 3.5E-37 T 29-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AM354_RS03100 fa5e817c770ac223aa036301f6103c16 227 Hamap MF_00157 Ribonuclease T [rnt]. 1 227 119.802 T 29-03-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 AM354_RS03100 fa5e817c770ac223aa036301f6103c16 227 SUPERFAMILY SSF53098 20 218 2.14E-58 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS08400 10cb4c0df43cab9e221ccd4b544e59f1 71 Hamap MF_00903 Probable Sec-independent protein translocase protein TatE [tatE]. 1 70 27.333 T 29-03-2018 IPR024905 Sec-independent protein translocase protein TatE AM354_RS08400 10cb4c0df43cab9e221ccd4b544e59f1 71 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 70 19.79 T 29-03-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 AM354_RS08400 10cb4c0df43cab9e221ccd4b544e59f1 71 Pfam PF02416 mttA/Hcf106 family 4 48 6.0E-12 T 29-03-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 AM354_RS08400 10cb4c0df43cab9e221ccd4b544e59f1 71 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 47 2.6E-18 T 29-03-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 AM354_RS21695 ce892c4053af82f069be991477da8391 141 Gene3D G3DSA:3.40.630.30 1 78 5.0E-13 T 29-03-2018 AM354_RS21695 ce892c4053af82f069be991477da8391 141 SUPERFAMILY SSF55729 1 126 1.3E-24 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS21695 ce892c4053af82f069be991477da8391 141 Gene3D G3DSA:3.40.630.30 79 139 2.4E-9 T 29-03-2018 AM354_RS21695 ce892c4053af82f069be991477da8391 141 Pfam PF13508 Acetyltransferase (GNAT) domain 46 121 2.0E-12 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS04715 e0fc98cf9328a1ae3207e4ed0e656464 174 Pfam PF05433 Glycine zipper 2TM domain 69 109 3.0E-11 T 29-03-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 AM354_RS02170 cc849aa5fe9f4ba82beea8ff6645c8b5 460 Gene3D G3DSA:3.40.640.10 66 328 1.2E-68 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS02170 cc849aa5fe9f4ba82beea8ff6645c8b5 460 SUPERFAMILY SSF53383 30 452 1.11E-123 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS02170 cc849aa5fe9f4ba82beea8ff6645c8b5 460 PIRSF PIRSF000521 2 148 3.5E-8 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM354_RS02170 cc849aa5fe9f4ba82beea8ff6645c8b5 460 PIRSF PIRSF000521 140 455 1.8E-36 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM354_RS02170 cc849aa5fe9f4ba82beea8ff6645c8b5 460 Gene3D G3DSA:3.90.1150.10 329 458 6.3E-28 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS02170 cc849aa5fe9f4ba82beea8ff6645c8b5 460 TIGRFAM TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase 21 454 2.4E-214 T 29-03-2018 IPR004637 2,4-diaminobutyrate 4-transaminase GO:0008483|GO:0009058 KEGG: 00260+2.6.1.76|MetaCyc: PWY-6409|MetaCyc: PWY-6562|MetaCyc: PWY-761|MetaCyc: PWY-7855 AM354_RS02170 cc849aa5fe9f4ba82beea8ff6645c8b5 460 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 262 299 - T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM354_RS02170 cc849aa5fe9f4ba82beea8ff6645c8b5 460 Pfam PF00202 Aminotransferase class-III 39 452 1.5E-100 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM354_RS17225 7c9b96391395c8b200971b964290253f 484 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 30 476 1.3E-220 T 29-03-2018 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 AM354_RS17225 7c9b96391395c8b200971b964290253f 484 SUPERFAMILY SSF53720 6 481 1.24E-175 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM354_RS17225 7c9b96391395c8b200971b964290253f 484 Pfam PF00171 Aldehyde dehydrogenase family 22 476 1.1E-172 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM354_RS17225 7c9b96391395c8b200971b964290253f 484 Gene3D G3DSA:3.40.309.10 273 464 9.2E-76 T 29-03-2018 AM354_RS17225 7c9b96391395c8b200971b964290253f 484 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 282 293 - T 29-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AM354_RS17225 7c9b96391395c8b200971b964290253f 484 Gene3D G3DSA:3.40.605.10 7 272 4.8E-104 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM354_RS17225 7c9b96391395c8b200971b964290253f 484 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 254 261 - T 29-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AM354_RS08745 0e079fee9486b5319a58ca3207a30d93 387 Pfam PF07690 Major Facilitator Superfamily 21 340 1.1E-33 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS08745 0e079fee9486b5319a58ca3207a30d93 387 Gene3D G3DSA:1.20.1250.20 192 378 2.4E-10 T 29-03-2018 AM354_RS08745 0e079fee9486b5319a58ca3207a30d93 387 SUPERFAMILY SSF103473 3 385 2.49E-51 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS08745 0e079fee9486b5319a58ca3207a30d93 387 Gene3D G3DSA:1.20.1250.20 1 191 5.5E-26 T 29-03-2018 AM354_RS08880 591e6679651699e97260c9e0165151af 237 Pfam PF00005 ABC transporter 20 158 1.8E-22 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS08880 591e6679651699e97260c9e0165151af 237 SMART SM00382 26 207 9.0E-14 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS08880 591e6679651699e97260c9e0165151af 237 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS08880 591e6679651699e97260c9e0165151af 237 SUPERFAMILY SSF52540 2 205 6.2E-46 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS08880 591e6679651699e97260c9e0165151af 237 Gene3D G3DSA:3.40.50.300 1 233 7.5E-47 T 29-03-2018 AM354_RS15590 2dd5414d749accd339f3843e03cf6aed 79 SUPERFAMILY SSF46785 1 74 1.22E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS15590 2dd5414d749accd339f3843e03cf6aed 79 Gene3D G3DSA:1.10.10.10 1 76 1.3E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS15590 2dd5414d749accd339f3843e03cf6aed 79 Hamap MF_01586 Probable [Fe-S]-dependent transcriptional repressor [feoC]. 1 78 25.711 T 29-03-2018 IPR023732 Probable [Fe-S]-dependent transcriptional repressor AM354_RS15590 2dd5414d749accd339f3843e03cf6aed 79 Pfam PF09012 FeoC like transcriptional regulator 4 75 2.7E-19 T 29-03-2018 IPR015102 Transcriptional regulator HTH-type, FeoC AM354_RS21685 7dce98e9a9ef2543e1b648d711d0a27f 409 Pfam PF07690 Major Facilitator Superfamily 26 283 1.7E-27 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS21685 7dce98e9a9ef2543e1b648d711d0a27f 409 Gene3D G3DSA:1.20.1250.20 10 205 2.4E-24 T 29-03-2018 AM354_RS21685 7dce98e9a9ef2543e1b648d711d0a27f 409 Gene3D G3DSA:1.20.1250.20 207 409 1.4E-13 T 29-03-2018 AM354_RS21685 7dce98e9a9ef2543e1b648d711d0a27f 409 SUPERFAMILY SSF103473 11 399 5.89E-48 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS14470 0c8d2095cdda73e4156d21cb4f07b469 257 SMART SM00880 13 245 1.5E-23 T 29-03-2018 IPR007899 CHAD domain AM354_RS14470 0c8d2095cdda73e4156d21cb4f07b469 257 Pfam PF05235 CHAD domain 18 208 1.1E-24 T 29-03-2018 IPR007899 CHAD domain AM354_RS03480 7d093e14d221491a0070f96bf1ed1ac2 284 SUPERFAMILY SSF81345 8 266 4.05E-44 T 29-03-2018 IPR029022 ABC transporter, BtuC-like AM354_RS03480 7d093e14d221491a0070f96bf1ed1ac2 284 Gene3D G3DSA:1.10.3470.10 4 278 2.2E-31 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS03480 7d093e14d221491a0070f96bf1ed1ac2 284 Pfam PF00950 ABC 3 transport family 14 268 7.6E-96 T 29-03-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 AM354_RS22650 35147e73d13ebceae03847a50381bb57 383 Pfam PF03797 Autotransporter beta-domain 217 318 1.8E-6 T 29-03-2018 IPR005546 Autotransporter beta-domain AM354_RS22650 35147e73d13ebceae03847a50381bb57 383 Gene3D G3DSA:2.40.160.10 12 383 2.6E-31 T 29-03-2018 AM354_RS22650 35147e73d13ebceae03847a50381bb57 383 SUPERFAMILY SSF56935 46 383 3.4E-28 T 29-03-2018 AM354_RS04445 6fd94eaddcc834d0fc44718dd1272731 197 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 7 197 40.264 T 29-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AM354_RS04445 6fd94eaddcc834d0fc44718dd1272731 197 Pfam PF00574 Clp protease 17 196 3.2E-78 T 29-03-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA AM354_RS04445 6fd94eaddcc834d0fc44718dd1272731 197 PRINTS PR00127 Clp protease catalytic subunit P signature 23 38 1.2E-45 T 29-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AM354_RS04445 6fd94eaddcc834d0fc44718dd1272731 197 PRINTS PR00127 Clp protease catalytic subunit P signature 115 134 1.2E-45 T 29-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AM354_RS04445 6fd94eaddcc834d0fc44718dd1272731 197 PRINTS PR00127 Clp protease catalytic subunit P signature 63 83 1.2E-45 T 29-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AM354_RS04445 6fd94eaddcc834d0fc44718dd1272731 197 PRINTS PR00127 Clp protease catalytic subunit P signature 172 191 1.2E-45 T 29-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AM354_RS04445 6fd94eaddcc834d0fc44718dd1272731 197 PRINTS PR00127 Clp protease catalytic subunit P signature 94 111 1.2E-45 T 29-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AM354_RS04445 6fd94eaddcc834d0fc44718dd1272731 197 SUPERFAMILY SSF52096 14 195 2.41E-70 T 29-03-2018 IPR029045 ClpP/crotonase-like domain AM354_RS04445 6fd94eaddcc834d0fc44718dd1272731 197 Gene3D G3DSA:3.90.226.10 6 197 9.2E-50 T 29-03-2018 AM354_RS26145 fa02c7ee08b2571401420f2d82090635 70 Gene3D G3DSA:1.10.1220.10 1 58 2.8E-10 T 29-03-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AM354_RS16625 20ea7c743f8580d0430b01bb4440e2c4 301 SUPERFAMILY SSF51197 97 238 4.67E-20 T 29-03-2018 AM354_RS16625 20ea7c743f8580d0430b01bb4440e2c4 301 Gene3D G3DSA:2.60.120.330 63 245 1.1E-45 T 29-03-2018 IPR027443 Isopenicillin N synthase-like AM354_RS16625 20ea7c743f8580d0430b01bb4440e2c4 301 Pfam PF05118 Aspartyl/Asparaginyl beta-hydroxylase 71 222 1.7E-49 T 29-03-2018 IPR007803 Aspartyl/asparaginy/proline hydroxylase GO:0018193 AM354_RS08580 21150305e63a84c53506b366a60fa850 223 SUPERFAMILY SSF52266 40 217 5.64E-49 T 29-03-2018 IPR013830 SGNH hydrolase-type esterase domain AM354_RS08580 21150305e63a84c53506b366a60fa850 223 ProSitePatterns PS01098 Lipolytic enzymes "G-D-S-L" family, serine active site. 41 51 - T 29-03-2018 IPR008265 Lipase, GDSL, active site GO:0006629|GO:0016298 Reactome: R-HSA-1482788|Reactome: R-HSA-975634 AM354_RS08580 21150305e63a84c53506b366a60fa850 223 Gene3D G3DSA:3.40.50.1110 37 221 5.6E-35 T 29-03-2018 AM354_RS08580 21150305e63a84c53506b366a60fa850 223 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 44 201 3.3E-24 T 29-03-2018 IPR013830 SGNH hydrolase-type esterase domain AM354_RS19670 e58997e95430d0fe3beaedcb91350d74 410 Gene3D G3DSA:3.40.640.10 33 269 8.9E-49 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS19670 e58997e95430d0fe3beaedcb91350d74 410 SUPERFAMILY SSF53383 5 406 1.75E-93 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS19670 e58997e95430d0fe3beaedcb91350d74 410 TIGRFAM TIGR01976 am_tr_V_VC1184: cysteine desulfurase family protein 3 403 7.4E-153 T 29-03-2018 IPR011340 Cysteine desulfurase-related AM354_RS19670 e58997e95430d0fe3beaedcb91350d74 410 Gene3D G3DSA:3.90.1150.10 270 408 1.2E-34 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS19670 e58997e95430d0fe3beaedcb91350d74 410 Pfam PF00266 Aminotransferase class-V 25 400 2.5E-68 T 29-03-2018 IPR000192 Aminotransferase class V domain AM354_RS05510 0c9d825f34d558ac39c4fa8227280e56 182 PIRSF PIRSF010252 1 178 9.1E-64 T 29-03-2018 IPR009809 Cell division protein ZapC AM354_RS05510 0c9d825f34d558ac39c4fa8227280e56 182 Hamap MF_00906 Cell division protein ZapC [zapC]. 2 178 40.101 T 29-03-2018 IPR009809 Cell division protein ZapC AM354_RS05510 0c9d825f34d558ac39c4fa8227280e56 182 Pfam PF07126 Cell-division protein ZapC 2 170 2.9E-72 T 29-03-2018 IPR009809 Cell division protein ZapC AM354_RS13955 1bc60126fff07a288a8182a2408796ff 258 SUPERFAMILY SSF52540 12 245 1.01E-59 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS13955 1bc60126fff07a288a8182a2408796ff 258 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS13955 1bc60126fff07a288a8182a2408796ff 258 SMART SM00382 36 238 3.0E-10 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS13955 1bc60126fff07a288a8182a2408796ff 258 Gene3D G3DSA:3.40.50.300 9 256 9.5E-62 T 29-03-2018 AM354_RS13955 1bc60126fff07a288a8182a2408796ff 258 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 12 258 2.6E-120 T 29-03-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 AM354_RS13955 1bc60126fff07a288a8182a2408796ff 258 Pfam PF00005 ABC transporter 27 182 4.2E-34 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS06730 2f866e24dbf1bb9c4ba8e6ad5c709499 208 Gene3D G3DSA:2.40.50.140 21 130 1.2E-7 T 29-03-2018 AM354_RS22365 74df600c121b406fa22f54cef04d13f9 332 PIRSF PIRSF026166 1 331 2.8E-130 T 29-03-2018 IPR016833 Putative sodium bile acid cotransporter AM354_RS22365 74df600c121b406fa22f54cef04d13f9 332 Pfam PF13593 SBF-like CPA transporter family (DUF4137) 6 314 2.2E-98 T 29-03-2018 IPR016833 Putative sodium bile acid cotransporter AM354_RS21965 622541ce34df4bbe33cd274b31caaacd 429 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 11 404 7.3E-129 T 29-03-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 AM354_RS21965 622541ce34df4bbe33cd274b31caaacd 429 Pfam PF00860 Permease family 16 383 1.8E-106 T 29-03-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 AM354_RS21965 622541ce34df4bbe33cd274b31caaacd 429 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 329 349 - T 29-03-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 AM354_RS17760 a93be16a9ab1afc65cafbe1a9caf08b6 63 SUPERFAMILY SSF55729 8 44 6.33E-8 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS17760 a93be16a9ab1afc65cafbe1a9caf08b6 63 Gene3D G3DSA:3.40.630.30 1 49 2.8E-7 T 29-03-2018 AM354_RS25325 b47d517ab66daeca5fcfa3a4634405a0 225 Pfam PF13860 FlgD Ig-like domain 114 181 7.5E-23 T 29-03-2018 IPR025965 FlgD Ig-like domain AM354_RS25325 b47d517ab66daeca5fcfa3a4634405a0 225 Pfam PF03963 Flagellar hook capping protein - N-terminal region 5 76 1.3E-22 T 29-03-2018 IPR005648 Flagellar hook capping protein AM354_RS25325 b47d517ab66daeca5fcfa3a4634405a0 225 Pfam PF13861 FlgD Tudor-like domain 84 222 1.9E-15 T 29-03-2018 IPR025963 FlgD Tudor-like domain AM354_RS02815 839bfaf3051b987ee7de3fda859c5727 387 SUPERFAMILY SSF56601 8 382 2.75E-91 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM354_RS02815 839bfaf3051b987ee7de3fda859c5727 387 Gene3D G3DSA:3.40.710.10 1 384 7.6E-89 T 29-03-2018 AM354_RS02815 839bfaf3051b987ee7de3fda859c5727 387 Pfam PF00144 Beta-lactamase 14 367 2.8E-67 T 29-03-2018 IPR001466 Beta-lactamase-related AM354_RS07670 65854d6c0fb98479f768b18bade8b2cc 384 Gene3D G3DSA:3.40.1710.10 52 203 5.6E-23 T 29-03-2018 AM354_RS07670 65854d6c0fb98479f768b18bade8b2cc 384 Pfam PF12698 ABC-2 family transporter protein 37 376 1.2E-40 T 29-03-2018 AM354_RS22100 228c05f8d0902e1f6e1acbd5663bd6ef 224 SUPERFAMILY SSF55166 94 178 3.26E-20 T 29-03-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AM354_RS22100 228c05f8d0902e1f6e1acbd5663bd6ef 224 SUPERFAMILY SSF55166 19 67 3.26E-20 T 29-03-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AM354_RS22100 228c05f8d0902e1f6e1acbd5663bd6ef 224 Pfam PF02557 D-alanyl-D-alanine carboxypeptidase 21 177 2.2E-38 T 29-03-2018 IPR003709 Peptidase M15B GO:0006508|GO:0008233 AM354_RS22100 228c05f8d0902e1f6e1acbd5663bd6ef 224 Gene3D G3DSA:3.30.1380.10 3 186 1.3E-30 T 29-03-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AM354_RS06345 bdf27357881f0ac9985b35e5820c939f 377 Pfam PF10531 SLBB domain 173 222 3.6E-8 T 29-03-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS06345 bdf27357881f0ac9985b35e5820c939f 377 Pfam PF10531 SLBB domain 256 305 6.4E-4 T 29-03-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS06345 bdf27357881f0ac9985b35e5820c939f 377 Gene3D G3DSA:3.30.1950.10 89 160 1.0E-26 T 29-03-2018 AM354_RS06345 bdf27357881f0ac9985b35e5820c939f 377 Gene3D G3DSA:1.20.5.70 346 374 4.1E-15 T 29-03-2018 AM354_RS06345 bdf27357881f0ac9985b35e5820c939f 377 Pfam PF02563 Polysaccharide biosynthesis/export protein 81 165 1.9E-28 T 29-03-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 AM354_RS06345 bdf27357881f0ac9985b35e5820c939f 377 Gene3D G3DSA:3.10.560.10 161 251 4.4E-25 T 29-03-2018 AM354_RS06345 bdf27357881f0ac9985b35e5820c939f 377 Gene3D G3DSA:3.10.560.10 252 344 8.8E-16 T 29-03-2018 AM354_RS13525 ffd3777cc0a3110e71567035a525b838 154 SUPERFAMILY SSF46785 16 147 4.27E-34 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS13525 ffd3777cc0a3110e71567035a525b838 154 Gene3D G3DSA:1.10.10.10 1 153 1.0E-26 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS13525 ffd3777cc0a3110e71567035a525b838 154 Pfam PF01047 MarR family 45 103 9.7E-16 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM354_RS13525 ffd3777cc0a3110e71567035a525b838 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 98 114 2.2E-5 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM354_RS13525 ffd3777cc0a3110e71567035a525b838 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 79 94 2.2E-5 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM354_RS13525 ffd3777cc0a3110e71567035a525b838 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 62 78 2.2E-5 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM354_RS13525 ffd3777cc0a3110e71567035a525b838 154 SMART SM00347 38 141 9.4E-21 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM354_RS03150 d646c2e46a5dd1e711cf50647b2d9941 216 SUPERFAMILY SSF63380 1 93 3.23E-27 T 29-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AM354_RS03150 d646c2e46a5dd1e711cf50647b2d9941 216 PIRSF PIRSF000498 1 211 1.1E-72 T 29-03-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AM354_RS03150 d646c2e46a5dd1e711cf50647b2d9941 216 Pfam PF00677 Lumazine binding domain 100 185 3.4E-22 T 29-03-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AM354_RS03150 d646c2e46a5dd1e711cf50647b2d9941 216 Pfam PF00677 Lumazine binding domain 3 87 2.2E-20 T 29-03-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AM354_RS03150 d646c2e46a5dd1e711cf50647b2d9941 216 Gene3D G3DSA:2.40.30.20 1 93 4.7E-27 T 29-03-2018 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS03150 d646c2e46a5dd1e711cf50647b2d9941 216 SUPERFAMILY SSF63380 93 200 4.76E-32 T 29-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AM354_RS03150 d646c2e46a5dd1e711cf50647b2d9941 216 Gene3D G3DSA:2.40.30.20 94 192 1.6E-26 T 29-03-2018 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS03150 d646c2e46a5dd1e711cf50647b2d9941 216 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 203 3.1E-82 T 29-03-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AM354_RS16320 b73c0621219c3fee3747bd698a778280 353 Gene3D G3DSA:3.40.190.10 174 327 3.3E-19 T 29-03-2018 AM354_RS16320 b73c0621219c3fee3747bd698a778280 353 SUPERFAMILY SSF53850 36 345 4.3E-47 T 29-03-2018 AM354_RS16320 b73c0621219c3fee3747bd698a778280 353 Pfam PF13343 Bacterial extracellular solute-binding protein 87 315 1.7E-35 T 29-03-2018 AM354_RS16320 b73c0621219c3fee3747bd698a778280 353 Gene3D G3DSA:3.40.190.10 34 173 7.9E-10 T 29-03-2018 AM354_RS12415 29af49cf22e0daeb9aad1ce6b15794fe 119 SUPERFAMILY SSF81343 1 119 4.58E-53 T 29-03-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM354_RS12415 29af49cf22e0daeb9aad1ce6b15794fe 119 Gene3D G3DSA:1.20.1300.10 1 119 1.6E-30 T 29-03-2018 AM354_RS12415 29af49cf22e0daeb9aad1ce6b15794fe 119 ProDom PD015693 FUMARATE MEMBRANE REDUCTASE D SUBUNIT INNER TRANSMEMBRANE HYDROPHOBIC REDUCTASE POLYPEPTIDE 1 119 5.0E-31 T 29-03-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 AM354_RS12415 29af49cf22e0daeb9aad1ce6b15794fe 119 Hamap MF_00709 Fumarate reductase subunit D [frdD]. 2 119 27.25 T 29-03-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 AM354_RS12415 29af49cf22e0daeb9aad1ce6b15794fe 119 Pfam PF02313 Fumarate reductase subunit D 6 116 4.5E-51 T 29-03-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 AM354_RS12415 29af49cf22e0daeb9aad1ce6b15794fe 119 PIRSF PIRSF000179 1 119 7.0E-53 T 29-03-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 AM354_RS08730 b77a7e4ba1133a8b7975eb8fc8827870 270 Gene3D G3DSA:3.50.30.50 22 262 2.1E-23 T 29-03-2018 AM354_RS08730 b77a7e4ba1133a8b7975eb8fc8827870 270 Pfam PF04199 Putative cyclase 49 194 1.6E-10 T 29-03-2018 IPR007325 Kynurenine formamidase GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 AM354_RS08730 b77a7e4ba1133a8b7975eb8fc8827870 270 SUPERFAMILY SSF102198 52 260 2.35E-11 T 29-03-2018 AM354_RS12285 c50e3596500d93700fd1ed90d8c7ab3f 243 Gene3D G3DSA:3.30.1330.30 1 75 6.4E-17 T 29-03-2018 IPR029064 50S ribosomal protein L30e-like AM354_RS12285 c50e3596500d93700fd1ed90d8c7ab3f 243 Gene3D G3DSA:3.40.1280.10 77 243 3.4E-48 T 29-03-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AM354_RS12285 c50e3596500d93700fd1ed90d8c7ab3f 243 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 4 76 1.4E-19 T 29-03-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 AM354_RS12285 c50e3596500d93700fd1ed90d8c7ab3f 243 Hamap MF_01887 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [rlmB]. 2 243 44.278 T 29-03-2018 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB AM354_RS12285 c50e3596500d93700fd1ed90d8c7ab3f 243 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 1 242 9.3E-92 T 29-03-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 AM354_RS12285 c50e3596500d93700fd1ed90d8c7ab3f 243 SMART SM00967 4 80 1.0E-21 T 29-03-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 AM354_RS12285 c50e3596500d93700fd1ed90d8c7ab3f 243 SUPERFAMILY SSF55315 2 75 2.24E-20 T 29-03-2018 IPR029064 50S ribosomal protein L30e-like AM354_RS12285 c50e3596500d93700fd1ed90d8c7ab3f 243 SUPERFAMILY SSF75217 69 243 2.03E-49 T 29-03-2018 IPR029028 Alpha/beta knot methyltransferases AM354_RS12285 c50e3596500d93700fd1ed90d8c7ab3f 243 Pfam PF00588 SpoU rRNA Methylase family 96 236 5.0E-40 T 29-03-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AM354_RS14985 4cc39a3d6f3d8db85e6b41a7ae11ac4a 726 Pfam PF10139 Putative bacterial virulence factor 97 400 1.6E-47 T 29-03-2018 IPR017030 Virulence effector, SrfC AM354_RS14985 4cc39a3d6f3d8db85e6b41a7ae11ac4a 726 Pfam PF10139 Putative bacterial virulence factor 22 88 7.8E-11 T 29-03-2018 IPR017030 Virulence effector, SrfC AM354_RS14985 4cc39a3d6f3d8db85e6b41a7ae11ac4a 726 Pfam PF10139 Putative bacterial virulence factor 403 720 2.7E-43 T 29-03-2018 IPR017030 Virulence effector, SrfC AM354_RS14985 4cc39a3d6f3d8db85e6b41a7ae11ac4a 726 Gene3D G3DSA:1.20.140.50 16 519 2.9E-4 T 29-03-2018 AM354_RS14985 4cc39a3d6f3d8db85e6b41a7ae11ac4a 726 PIRSF PIRSF034586 399 726 1.7E-78 T 29-03-2018 IPR017030 Virulence effector, SrfC AM354_RS14985 4cc39a3d6f3d8db85e6b41a7ae11ac4a 726 PIRSF PIRSF034586 5 402 4.9E-73 T 29-03-2018 IPR017030 Virulence effector, SrfC AM354_RS22620 511167f141f945e87d1379abc7f3bbf7 818 TIGRFAM TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA 22 818 4.7E-269 T 29-03-2018 IPR023870 Poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA GO:0022891|GO:0042710 AM354_RS22620 511167f141f945e87d1379abc7f3bbf7 818 Gene3D G3DSA:1.25.40.10 97 219 4.9E-7 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS22620 511167f141f945e87d1379abc7f3bbf7 818 SUPERFAMILY SSF56935 557 714 1.14E-6 T 29-03-2018 AM354_RS22620 511167f141f945e87d1379abc7f3bbf7 818 Gene3D G3DSA:2.40.160.10 519 724 2.3E-8 T 29-03-2018 AM354_RS22620 511167f141f945e87d1379abc7f3bbf7 818 SUPERFAMILY SSF48452 334 364 6.88E-5 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS22620 511167f141f945e87d1379abc7f3bbf7 818 SUPERFAMILY SSF48452 401 498 6.88E-5 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS22620 511167f141f945e87d1379abc7f3bbf7 818 Gene3D G3DSA:1.25.40.10 369 518 8.0E-8 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS04965 0d11fa922f57687f2dd5cb5a5b361ac5 132 SUPERFAMILY SSF54593 9 126 8.8E-20 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS04965 0d11fa922f57687f2dd5cb5a5b361ac5 132 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 10 123 7.2E-8 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AM354_RS04965 0d11fa922f57687f2dd5cb5a5b361ac5 132 Gene3D G3DSA:3.10.180.10 2 130 1.9E-17 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS07075 de8aa61ea78d7f22fee58a0c9609e1ea 60 Pfam PF06568 Domain of unknown function (DUF1127) 18 50 1.1E-10 T 29-03-2018 IPR009506 Protein of unknown function DUF1127 AM354_RS03715 5075ebe639539ee26f61b8531a17a830 161 Gene3D G3DSA:3.10.450.160 27 161 2.1E-28 T 29-03-2018 AM354_RS20555 f37daa4e2797d269954cf6f950175465 298 Gene3D G3DSA:3.40.190.10 89 176 7.8E-16 T 29-03-2018 AM354_RS20555 f37daa4e2797d269954cf6f950175465 298 Pfam PF03466 LysR substrate binding domain 88 294 8.8E-42 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS20555 f37daa4e2797d269954cf6f950175465 298 Gene3D G3DSA:3.40.190.10 177 265 5.8E-19 T 29-03-2018 AM354_RS20555 f37daa4e2797d269954cf6f950175465 298 Gene3D G3DSA:1.10.10.10 1 84 3.7E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS20555 f37daa4e2797d269954cf6f950175465 298 SUPERFAMILY SSF53850 89 295 1.11E-40 T 29-03-2018 AM354_RS20555 f37daa4e2797d269954cf6f950175465 298 SUPERFAMILY SSF46785 1 112 4.66E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS20555 f37daa4e2797d269954cf6f950175465 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.5E-18 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS25790 0d26a9d44e37822dd42f26417dbec451 335 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 6 213 2.1E-43 T 29-03-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 AM354_RS25790 0d26a9d44e37822dd42f26417dbec451 335 PIRSF PIRSF000267 2 335 2.4E-90 T 29-03-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 AM354_RS25790 0d26a9d44e37822dd42f26417dbec451 335 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 5 324 1.1E-99 T 29-03-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 AM354_RS25395 4753be2b061ea1450a2b9926da071d0c 253 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 228 240 - T 29-03-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AM354_RS25395 4753be2b061ea1450a2b9926da071d0c 253 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 225 250 1.7E-68 T 29-03-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AM354_RS25395 4753be2b061ea1450a2b9926da071d0c 253 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 72 92 1.7E-68 T 29-03-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AM354_RS25395 4753be2b061ea1450a2b9926da071d0c 253 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 53 72 1.7E-68 T 29-03-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AM354_RS25395 4753be2b061ea1450a2b9926da071d0c 253 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 92 111 1.7E-68 T 29-03-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AM354_RS25395 4753be2b061ea1450a2b9926da071d0c 253 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 180 200 1.7E-68 T 29-03-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AM354_RS25395 4753be2b061ea1450a2b9926da071d0c 253 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 201 222 1.7E-68 T 29-03-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AM354_RS25395 4753be2b061ea1450a2b9926da071d0c 253 Pfam PF00813 FliP family 55 247 2.3E-78 T 29-03-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AM354_RS25395 4753be2b061ea1450a2b9926da071d0c 253 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 51 60 1.0E-31 T 29-03-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AM354_RS25395 4753be2b061ea1450a2b9926da071d0c 253 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 241 251 1.0E-31 T 29-03-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AM354_RS25395 4753be2b061ea1450a2b9926da071d0c 253 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 173 185 1.0E-31 T 29-03-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AM354_RS25395 4753be2b061ea1450a2b9926da071d0c 253 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 111 123 1.0E-31 T 29-03-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AM354_RS25395 4753be2b061ea1450a2b9926da071d0c 253 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 123 137 1.0E-31 T 29-03-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AM354_RS25395 4753be2b061ea1450a2b9926da071d0c 253 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 151 163 1.0E-31 T 29-03-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AM354_RS25395 4753be2b061ea1450a2b9926da071d0c 253 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 180 195 - T 29-03-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AM354_RS25395 4753be2b061ea1450a2b9926da071d0c 253 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 55 251 4.4E-93 T 29-03-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AM354_RS25255 03166805fc4a0905ea917e50af9a44c9 349 SUPERFAMILY SSF52172 1 108 4.98E-27 T 29-03-2018 IPR011006 CheY-like superfamily AM354_RS25255 03166805fc4a0905ea917e50af9a44c9 349 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 4 342 41.465 T 29-03-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AM354_RS25255 03166805fc4a0905ea917e50af9a44c9 349 Gene3D G3DSA:3.40.50.2300 1 163 5.4E-27 T 29-03-2018 AM354_RS25255 03166805fc4a0905ea917e50af9a44c9 349 SMART SM00448 4 119 6.7E-22 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS25255 03166805fc4a0905ea917e50af9a44c9 349 Pfam PF01339 CheB methylesterase 159 336 3.1E-63 T 29-03-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AM354_RS25255 03166805fc4a0905ea917e50af9a44c9 349 Pfam PF00072 Response regulator receiver domain 6 109 6.3E-24 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM354_RS25255 03166805fc4a0905ea917e50af9a44c9 349 Gene3D G3DSA:3.40.50.180 164 349 6.7E-81 T 29-03-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AM354_RS25255 03166805fc4a0905ea917e50af9a44c9 349 PIRSF PIRSF000876 1 346 4.7E-138 T 29-03-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AM354_RS25255 03166805fc4a0905ea917e50af9a44c9 349 SUPERFAMILY SSF52738 156 342 4.58E-75 T 29-03-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AM354_RS01210 e0feb37e3b73a5612226ee8007acda73 319 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 101 112 4.7E-13 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS01210 e0feb37e3b73a5612226ee8007acda73 319 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 203 220 4.7E-13 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS01210 e0feb37e3b73a5612226ee8007acda73 319 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 144 160 4.7E-13 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS01210 e0feb37e3b73a5612226ee8007acda73 319 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 31 48 4.7E-13 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS01210 e0feb37e3b73a5612226ee8007acda73 319 SUPERFAMILY SSF51735 28 278 1.63E-49 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS01210 e0feb37e3b73a5612226ee8007acda73 319 Gene3D G3DSA:3.40.50.720 20 318 1.6E-55 T 29-03-2018 AM354_RS01210 e0feb37e3b73a5612226ee8007acda73 319 Pfam PF00106 short chain dehydrogenase 32 226 1.0E-23 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS13480 fbd65cdf0ef160ff50208afdb4479850 535 Gene3D G3DSA:3.90.76.10 38 203 9.9E-38 T 29-03-2018 AM354_RS13480 fbd65cdf0ef160ff50208afdb4479850 535 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 79 101 - T 29-03-2018 IPR023765 Solute-binding protein family 5, conserved site AM354_RS13480 fbd65cdf0ef160ff50208afdb4479850 535 SUPERFAMILY SSF53850 29 534 1.99E-158 T 29-03-2018 AM354_RS13480 fbd65cdf0ef160ff50208afdb4479850 535 PIRSF PIRSF002741 22 534 3.3E-116 T 29-03-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AM354_RS13480 fbd65cdf0ef160ff50208afdb4479850 535 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 73 453 1.6E-105 T 29-03-2018 IPR000914 Solute-binding protein family 5 domain AM354_RS13480 fbd65cdf0ef160ff50208afdb4479850 535 Gene3D G3DSA:3.40.190.10 204 299 4.7E-27 T 29-03-2018 AM354_RS13480 fbd65cdf0ef160ff50208afdb4479850 535 Gene3D G3DSA:3.10.105.10 300 506 1.6E-63 T 29-03-2018 AM354_RS17235 7321c774b5146d881301af2497362fe1 211 Gene3D G3DSA:1.20.1050.10 98 206 5.3E-12 T 29-03-2018 AM354_RS17235 7321c774b5146d881301af2497362fe1 211 Pfam PF13417 Glutathione S-transferase, N-terminal domain 15 84 1.2E-12 T 29-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AM354_RS17235 7321c774b5146d881301af2497362fe1 211 SUPERFAMILY SSF52833 14 110 8.98E-18 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS17235 7321c774b5146d881301af2497362fe1 211 Pfam PF14834 Glutathione S-transferase, C-terminal domain 92 208 9.1E-52 T 29-03-2018 IPR034338 Glutathione S-transferases, subfamily 4, C-terminal KEGG: 00480+2.5.1.18|KEGG: 00980+2.5.1.18|KEGG: 00982+2.5.1.18|MetaCyc: PWY-4061|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7533 AM354_RS17235 7321c774b5146d881301af2497362fe1 211 SUPERFAMILY SSF47616 88 203 5.04E-11 T 29-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like AM354_RS17235 7321c774b5146d881301af2497362fe1 211 Gene3D G3DSA:3.40.30.10 5 97 8.5E-24 T 29-03-2018 AM354_RS24085 d458c50140a6775de3b43ba6996af306 276 Pfam PF00561 alpha/beta hydrolase fold 24 256 5.0E-23 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS24085 d458c50140a6775de3b43ba6996af306 276 Gene3D G3DSA:3.40.50.1820 1 276 2.1E-69 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS24085 d458c50140a6775de3b43ba6996af306 276 SUPERFAMILY SSF53474 1 275 8.18E-66 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS24085 d458c50140a6775de3b43ba6996af306 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 49 64 4.3E-10 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS24085 d458c50140a6775de3b43ba6996af306 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 219 233 4.3E-10 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS24085 d458c50140a6775de3b43ba6996af306 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 93 106 4.3E-10 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS13110 0d80448daa33f5f75f9be57d97e4cd27 91 TIGRFAM TIGR02385 RelE_StbE: addiction module toxin, RelE/StbE family 4 86 8.5E-11 T 29-03-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family AM354_RS13110 0d80448daa33f5f75f9be57d97e4cd27 91 Gene3D G3DSA:3.30.2310.20 1 91 3.0E-5 T 29-03-2018 AM354_RS13110 0d80448daa33f5f75f9be57d97e4cd27 91 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 4 90 6.0E-17 T 29-03-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family AM354_RS08380 0016286edea14b5e7bea03fe0dfe324c 403 Gene3D G3DSA:3.40.710.10 20 311 1.1E-47 T 29-03-2018 AM354_RS08380 0016286edea14b5e7bea03fe0dfe324c 403 SUPERFAMILY SSF69189 292 385 2.35E-25 T 29-03-2018 IPR015956 Penicillin-binding protein-associated GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM354_RS08380 0016286edea14b5e7bea03fe0dfe324c 403 SMART SM00936 292 383 4.4E-34 T 29-03-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM354_RS08380 0016286edea14b5e7bea03fe0dfe324c 403 Gene3D G3DSA:2.60.410.10 312 383 3.2E-18 T 29-03-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM354_RS08380 0016286edea14b5e7bea03fe0dfe324c 403 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 39 272 2.1E-99 T 29-03-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 AM354_RS08380 0016286edea14b5e7bea03fe0dfe324c 403 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 292 383 8.2E-25 T 29-03-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM354_RS08380 0016286edea14b5e7bea03fe0dfe324c 403 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 72 83 1.3E-16 T 29-03-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AM354_RS08380 0016286edea14b5e7bea03fe0dfe324c 403 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 158 171 1.3E-16 T 29-03-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AM354_RS08380 0016286edea14b5e7bea03fe0dfe324c 403 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 131 148 1.3E-16 T 29-03-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AM354_RS08380 0016286edea14b5e7bea03fe0dfe324c 403 SUPERFAMILY SSF56601 9 292 2.14E-77 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM354_RS00175 9b3590a587318541b87a06e83abd4e5c 90 ProDom PD030374 YCGL UNCHARACTERIZED SIMILAR BACTERIA HI1446 Y2231 HYDROLASE CYTOPLASMIC YPO2080 SO2575 1 82 3.0E-31 T 29-03-2018 IPR027354 YcgL domain AM354_RS00175 9b3590a587318541b87a06e83abd4e5c 90 Hamap MF_01866 Protein YcgL [ycgL]. 1 88 27.303 T 29-03-2018 IPR027354 YcgL domain AM354_RS00175 9b3590a587318541b87a06e83abd4e5c 90 SUPERFAMILY SSF160191 1 85 1.57E-39 T 29-03-2018 AM354_RS00175 9b3590a587318541b87a06e83abd4e5c 90 Pfam PF05166 YcgL domain 3 75 7.0E-34 T 29-03-2018 IPR027354 YcgL domain AM354_RS24705 8b1d3a05aaf09f727ce3cbc85fc359d4 95 Pfam PF06243 Phenylacetic acid degradation B 5 91 3.1E-39 T 29-03-2018 IPR009359 Phenylacetic acid degradation B AM354_RS24705 8b1d3a05aaf09f727ce3cbc85fc359d4 95 TIGRFAM TIGR02157 PA_CoA_Oxy2: phenylacetate-CoA oxygenase, PaaH subunit 6 95 4.0E-46 T 29-03-2018 IPR009359 Phenylacetic acid degradation B AM354_RS24705 8b1d3a05aaf09f727ce3cbc85fc359d4 95 PIRSF PIRSF030200 1 95 1.5E-41 T 29-03-2018 IPR009359 Phenylacetic acid degradation B AM354_RS13760 deced5abe711931a7b32cfab05e124bf 220 Pfam PF13488 Glycine zipper 37 85 3.9E-11 T 29-03-2018 AM354_RS13760 deced5abe711931a7b32cfab05e124bf 220 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 199 219 7.4E-5 T 29-03-2018 AM354_RS13760 deced5abe711931a7b32cfab05e124bf 220 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 179 198 7.4E-5 T 29-03-2018 AM354_RS13760 deced5abe711931a7b32cfab05e124bf 220 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 161 178 7.4E-5 T 29-03-2018 AM354_RS13760 deced5abe711931a7b32cfab05e124bf 220 Gene3D G3DSA:3.30.1330.60 83 220 4.4E-42 T 29-03-2018 IPR006665 OmpA-like domain AM354_RS13760 deced5abe711931a7b32cfab05e124bf 220 PRINTS PR01021 OMPA domain signature 116 138 4.4E-13 T 29-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AM354_RS13760 deced5abe711931a7b32cfab05e124bf 220 PRINTS PR01021 OMPA domain signature 161 177 4.4E-13 T 29-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AM354_RS13760 deced5abe711931a7b32cfab05e124bf 220 PRINTS PR01021 OMPA domain signature 146 161 4.4E-13 T 29-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AM354_RS13760 deced5abe711931a7b32cfab05e124bf 220 ProSitePatterns PS01068 OmpA-like domain. 148 192 - T 29-03-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 AM354_RS13760 deced5abe711931a7b32cfab05e124bf 220 SUPERFAMILY SSF103088 103 218 5.36E-38 T 29-03-2018 IPR006665 OmpA-like domain AM354_RS13760 deced5abe711931a7b32cfab05e124bf 220 Pfam PF00691 OmpA family 115 210 7.5E-22 T 29-03-2018 IPR006665 OmpA-like domain AM354_RS04845 5949824b86d5e2447ac0cd066d205bad 55 SUPERFAMILY SSF57829 2 54 4.46E-18 T 29-03-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 AM354_RS04845 5949824b86d5e2447ac0cd066d205bad 55 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 54 17.023 T 29-03-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS04845 5949824b86d5e2447ac0cd066d205bad 55 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 54 2.6E-19 T 29-03-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS04845 5949824b86d5e2447ac0cd066d205bad 55 Pfam PF01783 Ribosomal L32p protein family 2 54 3.1E-19 T 29-03-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS22900 d01492d56174e7b11b42a2819f385a37 209 SUPERFAMILY SSF51161 30 200 2.22E-37 T 29-03-2018 IPR011004 Trimeric LpxA-like AM354_RS22900 d01492d56174e7b11b42a2819f385a37 209 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 109 144 5.0E-10 T 29-03-2018 IPR001451 Hexapeptide repeat AM354_RS22900 d01492d56174e7b11b42a2819f385a37 209 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 118 146 - T 29-03-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AM354_RS22900 d01492d56174e7b11b42a2819f385a37 209 Gene3D G3DSA:2.160.10.10 1 207 2.6E-37 T 29-03-2018 AM354_RS22440 2b3ab671a33eed6f4dee248a2d03b4a1 335 Gene3D G3DSA:3.40.50.1980 169 334 1.3E-27 T 29-03-2018 AM354_RS22440 2b3ab671a33eed6f4dee248a2d03b4a1 335 Pfam PF01497 Periplasmic binding protein 63 312 3.6E-31 T 29-03-2018 IPR002491 ABC transporter periplasmic binding domain GO:0005488 AM354_RS22440 2b3ab671a33eed6f4dee248a2d03b4a1 335 SUPERFAMILY SSF53807 40 325 4.71E-47 T 29-03-2018 AM354_RS22440 2b3ab671a33eed6f4dee248a2d03b4a1 335 Gene3D G3DSA:3.40.50.1980 31 168 8.5E-25 T 29-03-2018 AM354_RS00720 ea0b5b996c76fbd11bb750fb590e6807 473 Pfam PF11134 Phage stabilisation protein 4 473 2.0E-254 T 29-03-2018 IPR021098 Bacteriophage P22, Gp10, DNA-stabilising AM354_RS24305 7b107f73e20641dcc660c28f50411a2d 172 Pfam PF13420 Acetyltransferase (GNAT) domain 3 155 1.7E-21 T 29-03-2018 AM354_RS24305 7b107f73e20641dcc660c28f50411a2d 172 Gene3D G3DSA:3.40.630.30 1 170 5.4E-35 T 29-03-2018 AM354_RS24305 7b107f73e20641dcc660c28f50411a2d 172 SUPERFAMILY SSF55729 2 166 1.38E-34 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS07840 2fa3363afa536316d24967bd9e592114 350 Gene3D G3DSA:3.30.428.10 45 163 4.9E-49 T 29-03-2018 IPR011146 HIT-like domain GO:0003824 AM354_RS07840 2fa3363afa536316d24967bd9e592114 350 TIGRFAM TIGR00209 galT_1: galactose-1-phosphate uridylyltransferase 1 346 4.8E-201 T 29-03-2018 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0008108|GO:0008270|GO:0033499 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-70370 AM354_RS07840 2fa3363afa536316d24967bd9e592114 350 SUPERFAMILY SSF54197 179 345 4.42E-56 T 29-03-2018 IPR011146 HIT-like domain GO:0003824 AM354_RS07840 2fa3363afa536316d24967bd9e592114 350 SUPERFAMILY SSF54197 4 177 1.83E-71 T 29-03-2018 IPR011146 HIT-like domain GO:0003824 AM354_RS07840 2fa3363afa536316d24967bd9e592114 350 Pfam PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain 183 346 5.2E-70 T 29-03-2018 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-70370 AM354_RS07840 2fa3363afa536316d24967bd9e592114 350 Pfam PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain 3 176 4.7E-69 T 29-03-2018 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-70370 AM354_RS07840 2fa3363afa536316d24967bd9e592114 350 Gene3D G3DSA:3.30.428.10 164 346 3.0E-56 T 29-03-2018 IPR011146 HIT-like domain GO:0003824 AM354_RS07840 2fa3363afa536316d24967bd9e592114 350 ProSitePatterns PS00117 Galactose-1-phosphate uridyl transferase family 1 active site signature. 151 168 - T 29-03-2018 IPR019779 Galactose-1-phosphate uridyl transferase, class I His-active site KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-70370 AM354_RS07840 2fa3363afa536316d24967bd9e592114 350 PIRSF PIRSF000808 1 341 8.1E-124 T 29-03-2018 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0008108|GO:0008270|GO:0033499 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-70370 AM354_RS11250 407a58dbfffa17637ac347b0b61fae1f 128 SUPERFAMILY SSF55331 2 125 7.94E-45 T 29-03-2018 IPR014347 Tautomerase/MIF superfamily AM354_RS11250 407a58dbfffa17637ac347b0b61fae1f 128 Gene3D G3DSA:3.30.429.10 1 126 1.8E-46 T 29-03-2018 AM354_RS11250 407a58dbfffa17637ac347b0b61fae1f 128 Pfam PF02962 5-carboxymethyl-2-hydroxymuconate isomerase 2 124 1.1E-25 T 29-03-2018 IPR004220 5-carboxymethyl-2-hydroxymuconate isomerase GO:0008704|GO:0019439 KEGG: 00350+5.3.3.10 AM354_RS06955 0b2544056b518966392afdc72e60f624 283 Gene3D G3DSA:3.40.630.30 6 143 3.4E-20 T 29-03-2018 AM354_RS06955 0b2544056b518966392afdc72e60f624 283 SUPERFAMILY SSF55729 18 141 4.39E-20 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS06955 0b2544056b518966392afdc72e60f624 283 Pfam PF00583 Acetyltransferase (GNAT) family 64 133 1.3E-12 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS06955 0b2544056b518966392afdc72e60f624 283 Gene3D G3DSA:3.40.630.30 144 276 2.4E-10 T 29-03-2018 AM354_RS06955 0b2544056b518966392afdc72e60f624 283 SUPERFAMILY SSF55729 201 273 6.42E-10 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS09190 28e592370cb6068bf6950cb22ee2c457 164 Pfam PF04608 Phosphatidylglycerophosphatase A 15 155 5.6E-52 T 29-03-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 AM354_RS09190 28e592370cb6068bf6950cb22ee2c457 164 Gene3D G3DSA:1.10.3760.10 48 160 2.9E-37 T 29-03-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 AM354_RS09190 28e592370cb6068bf6950cb22ee2c457 164 SUPERFAMILY SSF101307 8 155 1.09E-47 T 29-03-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 AM354_RS09190 28e592370cb6068bf6950cb22ee2c457 164 PIRSF PIRSF006162 4 162 4.3E-60 T 29-03-2018 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 AM354_RS09855 577f2b08285c2f723e9184eb9f9a1de1 267 Pfam PF13230 Glutamine amidotransferases class-II 1 254 1.2E-114 T 29-03-2018 IPR026869 Putative glutamine amidotransferase type 2 AM354_RS09855 577f2b08285c2f723e9184eb9f9a1de1 267 SUPERFAMILY SSF56235 2 253 7.72E-52 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AM354_RS09855 577f2b08285c2f723e9184eb9f9a1de1 267 Gene3D G3DSA:3.60.20.10 1 258 5.6E-46 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AM354_RS24650 ec4d787b340a540ace0aef6c1f95873d 198 TIGRFAM TIGR02287 PaaY: phenylacetic acid degradation protein PaaY 3 194 1.4E-102 T 29-03-2018 IPR011974 Phenylacetic acid degradation protein PaaY AM354_RS24650 ec4d787b340a540ace0aef6c1f95873d 198 Gene3D G3DSA:2.160.10.10 2 175 5.3E-41 T 29-03-2018 AM354_RS24650 ec4d787b340a540ace0aef6c1f95873d 198 SUPERFAMILY SSF51161 2 167 1.39E-44 T 29-03-2018 IPR011004 Trimeric LpxA-like AM354_RS24650 ec4d787b340a540ace0aef6c1f95873d 198 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 16 45 9.2E-6 T 29-03-2018 IPR001451 Hexapeptide repeat AM354_RS24650 ec4d787b340a540ace0aef6c1f95873d 198 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 88 122 9.0E-8 T 29-03-2018 IPR001451 Hexapeptide repeat AM354_RS25265 a30eb370ad4629212feab67746646296 214 Gene3D G3DSA:1.10.287.500 36 168 3.2E-20 T 29-03-2018 AM354_RS25265 a30eb370ad4629212feab67746646296 214 SUPERFAMILY SSF75708 14 213 1.96E-66 T 29-03-2018 AM354_RS25265 a30eb370ad4629212feab67746646296 214 PIRSF PIRSF002884 5 214 8.1E-85 T 29-03-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 AM354_RS25265 a30eb370ad4629212feab67746646296 214 Pfam PF04344 Chemotaxis phosphatase, CheZ 16 214 1.7E-76 T 29-03-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 AM354_RS25265 a30eb370ad4629212feab67746646296 214 Gene3D G3DSA:1.20.5.590 6 34 4.1E-16 T 29-03-2018 AM354_RS17185 1c9ebea0831af4b6dc574059510056f8 243 SUPERFAMILY SSF52317 39 220 3.11E-37 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS17185 1c9ebea0831af4b6dc574059510056f8 243 Pfam PF00117 Glutamine amidotransferase class-I 54 193 8.8E-18 T 29-03-2018 IPR017926 Glutamine amidotransferase AM354_RS17185 1c9ebea0831af4b6dc574059510056f8 243 Gene3D G3DSA:3.40.50.880 9 232 6.6E-37 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS05065 1af86210279ab3da5bc5e78d0bafa2a4 455 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 11 451 2.0E-66 T 29-03-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 AM354_RS05065 1af86210279ab3da5bc5e78d0bafa2a4 455 Gene3D G3DSA:1.20.1600.10 22 454 2.6E-77 T 29-03-2018 AM354_RS05065 1af86210279ab3da5bc5e78d0bafa2a4 455 SUPERFAMILY SSF56954 3 451 1.31E-82 T 29-03-2018 AM354_RS05065 1af86210279ab3da5bc5e78d0bafa2a4 455 Pfam PF02321 Outer membrane efflux protein 60 244 6.8E-21 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 AM354_RS05065 1af86210279ab3da5bc5e78d0bafa2a4 455 Pfam PF02321 Outer membrane efflux protein 271 446 1.1E-21 T 29-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 AM354_RS06950 f0ad27b7e483e3f89cc3baa113f52133 365 PRINTS PR00183 E.coli/Salmonella-type porin signature 22 38 3.8E-66 T 29-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM354_RS06950 f0ad27b7e483e3f89cc3baa113f52133 365 PRINTS PR00183 E.coli/Salmonella-type porin signature 96 118 3.8E-66 T 29-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM354_RS06950 f0ad27b7e483e3f89cc3baa113f52133 365 PRINTS PR00183 E.coli/Salmonella-type porin signature 236 253 3.8E-66 T 29-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM354_RS06950 f0ad27b7e483e3f89cc3baa113f52133 365 PRINTS PR00183 E.coli/Salmonella-type porin signature 51 69 3.8E-66 T 29-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM354_RS06950 f0ad27b7e483e3f89cc3baa113f52133 365 PRINTS PR00183 E.coli/Salmonella-type porin signature 151 173 3.8E-66 T 29-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM354_RS06950 f0ad27b7e483e3f89cc3baa113f52133 365 PRINTS PR00183 E.coli/Salmonella-type porin signature 276 295 3.8E-66 T 29-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM354_RS06950 f0ad27b7e483e3f89cc3baa113f52133 365 Gene3D G3DSA:2.40.160.10 10 365 5.8E-53 T 29-03-2018 AM354_RS06950 f0ad27b7e483e3f89cc3baa113f52133 365 Pfam PF00267 Gram-negative porin 27 365 3.3E-136 T 29-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM354_RS06950 f0ad27b7e483e3f89cc3baa113f52133 365 SUPERFAMILY SSF56935 22 365 7.73E-79 T 29-03-2018 AM354_RS06950 f0ad27b7e483e3f89cc3baa113f52133 365 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 230 242 6.3E-15 T 29-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM354_RS06950 f0ad27b7e483e3f89cc3baa113f52133 365 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 320 337 6.3E-15 T 29-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM354_RS06950 f0ad27b7e483e3f89cc3baa113f52133 365 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 52 63 6.3E-15 T 29-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM354_RS06950 f0ad27b7e483e3f89cc3baa113f52133 365 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 153 164 6.3E-15 T 29-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM354_RS06950 f0ad27b7e483e3f89cc3baa113f52133 365 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 96 106 6.3E-15 T 29-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM354_RS04425 e2e08fc659e6f293a229eccb922ed1d9 365 Gene3D G3DSA:3.30.1780.10 3 145 1.0E-32 T 29-03-2018 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 AM354_RS04425 e2e08fc659e6f293a229eccb922ed1d9 365 PIRSF PIRSF001439 1 331 9.9E-53 T 29-03-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 AM354_RS04425 e2e08fc659e6f293a229eccb922ed1d9 365 Gene3D G3DSA:3.40.50.720 146 305 1.3E-14 T 29-03-2018 AM354_RS04425 e2e08fc659e6f293a229eccb922ed1d9 365 SUPERFAMILY SSF51735 1 332 8.2E-72 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS04425 e2e08fc659e6f293a229eccb922ed1d9 365 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 15 319 4.2E-60 T 29-03-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 AM354_RS17345 75766a695578fe789cabb70558a149e4 220 Hamap MF_01188 UPF0441 protein YgiB [ygiB]. 1 220 37.911 T 29-03-2018 IPR009576 Biofilm formation YgiB AM354_RS17345 75766a695578fe789cabb70558a149e4 220 Pfam PF06693 Protein of unknown function (DUF1190) 41 205 4.0E-58 T 29-03-2018 IPR009576 Biofilm formation YgiB AM354_RS09725 6f8a723db4e659ab3d2fcde46fd91ad7 400 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 16 396 1.5E-87 T 29-03-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 AM354_RS09725 6f8a723db4e659ab3d2fcde46fd91ad7 400 SUPERFAMILY SSF103473 18 396 1.31E-61 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS09725 6f8a723db4e659ab3d2fcde46fd91ad7 400 Gene3D G3DSA:1.20.1250.20 18 204 3.1E-30 T 29-03-2018 AM354_RS09725 6f8a723db4e659ab3d2fcde46fd91ad7 400 Pfam PF07690 Major Facilitator Superfamily 27 363 2.7E-40 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS09725 6f8a723db4e659ab3d2fcde46fd91ad7 400 Gene3D G3DSA:1.20.1250.20 205 398 1.1E-15 T 29-03-2018 AM354_RS19365 c669f698f80df853ab26b73af6ec3e77 156 TIGRFAM TIGR00022 TIGR00022: YhcH/YjgK/YiaL family protein 1 152 2.4E-39 T 29-03-2018 IPR004375 YhcH/YjgK/YiaL family AM354_RS19365 c669f698f80df853ab26b73af6ec3e77 156 SUPERFAMILY SSF51197 1 151 3.57E-39 T 29-03-2018 AM354_RS19365 c669f698f80df853ab26b73af6ec3e77 156 Pfam PF04074 Domain of unknown function (DUF386) 1 150 1.5E-39 T 29-03-2018 IPR004375 YhcH/YjgK/YiaL family AM354_RS19365 c669f698f80df853ab26b73af6ec3e77 156 Gene3D G3DSA:2.60.120.370 1 153 1.5E-41 T 29-03-2018 IPR004375 YhcH/YjgK/YiaL family AM354_RS22790 bf7c64c925258f728e9f3d38a2f65049 310 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 204 210 - T 29-03-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AM354_RS22790 bf7c64c925258f728e9f3d38a2f65049 310 SUPERFAMILY SSF53335 15 294 7.97E-51 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS22790 bf7c64c925258f728e9f3d38a2f65049 310 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 15 304 3.7E-102 T 29-03-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 AM354_RS22790 bf7c64c925258f728e9f3d38a2f65049 310 Pfam PF05175 Methyltransferase small domain 132 215 2.6E-15 T 29-03-2018 IPR007848 Methyltransferase small domain GO:0008168 AM354_RS22790 bf7c64c925258f728e9f3d38a2f65049 310 PIRSF PIRSF037167 2 307 1.0E-147 T 29-03-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 AM354_RS22790 bf7c64c925258f728e9f3d38a2f65049 310 Hamap MF_02125 50S ribosomal protein L3 glutamine methyltransferase [prmB]. 6 300 53.456 T 29-03-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 AM354_RS22790 bf7c64c925258f728e9f3d38a2f65049 310 TIGRFAM TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 13 295 1.1E-136 T 29-03-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 AM354_RS22790 bf7c64c925258f728e9f3d38a2f65049 310 Gene3D G3DSA:3.40.50.150 102 274 3.1E-36 T 29-03-2018 AM354_RS22790 bf7c64c925258f728e9f3d38a2f65049 310 Gene3D G3DSA:1.10.8.10 14 101 6.5E-12 T 29-03-2018 AM354_RS22370 836a69c1d4446a7496e076eff15369ed 306 SUPERFAMILY SSF53850 91 294 2.99E-40 T 29-03-2018 AM354_RS22370 836a69c1d4446a7496e076eff15369ed 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 9.4E-24 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS22370 836a69c1d4446a7496e076eff15369ed 306 Gene3D G3DSA:3.40.190.10 89 178 2.7E-22 T 29-03-2018 AM354_RS22370 836a69c1d4446a7496e076eff15369ed 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 5.5E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS22370 836a69c1d4446a7496e076eff15369ed 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 5.5E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS22370 836a69c1d4446a7496e076eff15369ed 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 5.5E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS22370 836a69c1d4446a7496e076eff15369ed 306 Gene3D G3DSA:3.40.190.10 179 268 1.3E-22 T 29-03-2018 AM354_RS22370 836a69c1d4446a7496e076eff15369ed 306 Gene3D G3DSA:1.10.10.10 1 84 3.9E-26 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS22370 836a69c1d4446a7496e076eff15369ed 306 SUPERFAMILY SSF46785 3 112 2.19E-26 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS22370 836a69c1d4446a7496e076eff15369ed 306 Pfam PF03466 LysR substrate binding domain 90 293 1.4E-44 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS10625 3bb3766c5eff687e3a218f7d533ccbda 164 Gene3D G3DSA:3.30.70.1150 89 162 4.3E-25 T 29-03-2018 AM354_RS10625 3bb3766c5eff687e3a218f7d533ccbda 164 Pfam PF10369 Small subunit of acetolactate synthase 85 159 1.1E-23 T 29-03-2018 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 AM354_RS10625 3bb3766c5eff687e3a218f7d533ccbda 164 Pfam PF01842 ACT domain 5 69 3.1E-15 T 29-03-2018 IPR002912 ACT domain AM354_RS10625 3bb3766c5eff687e3a218f7d533ccbda 164 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 2 77 1.0E-36 T 29-03-2018 AM354_RS10625 3bb3766c5eff687e3a218f7d533ccbda 164 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 2 160 5.1E-67 T 29-03-2018 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 AM354_RS10625 3bb3766c5eff687e3a218f7d533ccbda 164 SUPERFAMILY SSF55021 3 75 2.75E-22 T 29-03-2018 AM354_RS10625 3bb3766c5eff687e3a218f7d533ccbda 164 SUPERFAMILY SSF55021 80 163 9.16E-26 T 29-03-2018 AM354_RS10625 3bb3766c5eff687e3a218f7d533ccbda 164 Gene3D G3DSA:3.30.70.260 3 88 1.4E-23 T 29-03-2018 AM354_RS10660 48c9e14173361218bac64dd983c7af2b 200 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 199 45.357 T 29-03-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 AM354_RS10660 48c9e14173361218bac64dd983c7af2b 200 Gene3D G3DSA:3.20.19.10 1 176 9.4E-51 T 29-03-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel AM354_RS10660 48c9e14173361218bac64dd983c7af2b 200 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 2 188 9.5E-99 T 29-03-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 AM354_RS10660 48c9e14173361218bac64dd983c7af2b 200 SUPERFAMILY SSF52016 3 194 2.35E-61 T 29-03-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel AM354_RS10660 48c9e14173361218bac64dd983c7af2b 200 Pfam PF00694 Aconitase C-terminal domain 2 125 2.9E-40 T 29-03-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33 AM354_RS17485 ac71acea5a6bf167785e0cdb10f5231c 705 Gene3D G3DSA:1.10.443.10 298 544 3.8E-5 T 29-03-2018 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM354_RS04400 c529d8f29642c4fca19e8b58801c1c76 422 Pfam PF01546 Peptidase family M20/M25/M40 107 415 7.6E-20 T 29-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AM354_RS04400 c529d8f29642c4fca19e8b58801c1c76 422 Pfam PF07687 Peptidase dimerisation domain 207 317 3.7E-10 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain AM354_RS04400 c529d8f29642c4fca19e8b58801c1c76 422 Gene3D G3DSA:3.40.630.10 3 319 7.8E-42 T 29-03-2018 AM354_RS04400 c529d8f29642c4fca19e8b58801c1c76 422 SUPERFAMILY SSF55031 209 331 4.19E-9 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain AM354_RS04400 c529d8f29642c4fca19e8b58801c1c76 422 SUPERFAMILY SSF53187 16 218 6.01E-46 T 29-03-2018 AM354_RS04400 c529d8f29642c4fca19e8b58801c1c76 422 SUPERFAMILY SSF53187 342 417 6.01E-46 T 29-03-2018 AM354_RS01225 aa0b5c46dd3b74d9414b575d515d2ecb 221 Pfam PF04012 PspA/IM30 family 2 216 1.0E-48 T 29-03-2018 IPR007157 PspA/IM30 AM354_RS01225 aa0b5c46dd3b74d9414b575d515d2ecb 221 Gene3D G3DSA:1.20.5.1070 153 221 0.0076 T 29-03-2018 AM354_RS01225 aa0b5c46dd3b74d9414b575d515d2ecb 221 TIGRFAM TIGR02977 phageshock_pspA: phage shock protein A 1 218 7.0E-95 T 29-03-2018 IPR014319 Phage shock protein, PspA AM354_RS01225 aa0b5c46dd3b74d9414b575d515d2ecb 221 Gene3D G3DSA:1.20.5.320 92 152 9.8E-5 T 29-03-2018 AM354_RS05535 8e58f8eb588d3bface74be75d6fae5cd 264 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 80 247 7.0E-28 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS05535 8e58f8eb588d3bface74be75d6fae5cd 264 Gene3D G3DSA:1.10.3720.10 7 254 2.5E-31 T 29-03-2018 AM354_RS05535 8e58f8eb588d3bface74be75d6fae5cd 264 SUPERFAMILY SSF161098 56 237 2.88E-37 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS23905 3375b5156efa43161272d36e2706c596 243 SUPERFAMILY SSF52540 6 43 1.5E-13 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS23905 3375b5156efa43161272d36e2706c596 243 SUPERFAMILY SSF52540 72 226 1.5E-13 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS23905 3375b5156efa43161272d36e2706c596 243 Gene3D G3DSA:3.40.50.300 6 230 1.1E-16 T 29-03-2018 AM354_RS04725 fb08a8e82d132f3e1dee14bef5fcc55a 180 SUPERFAMILY SSF53474 2 176 2.11E-7 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS04725 fb08a8e82d132f3e1dee14bef5fcc55a 180 Hamap MF_01047 UPF0227 protein YcfP [ycfP]. 1 178 51.662 T 29-03-2018 IPR022987 Uncharacterised protein family UPF0227 AM354_RS04725 fb08a8e82d132f3e1dee14bef5fcc55a 180 Pfam PF05728 Uncharacterised protein family (UPF0227) 1 177 1.0E-71 T 29-03-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA AM354_RS01900 6906e0a0076383fbd2154741a19be6b2 557 ProSitePatterns PS00462 Gamma-glutamyltranspeptidase signature. 364 388 - T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AM354_RS01900 6906e0a0076383fbd2154741a19be6b2 557 Pfam PF01019 Gamma-glutamyltranspeptidase 45 550 1.2E-169 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AM354_RS01900 6906e0a0076383fbd2154741a19be6b2 557 SUPERFAMILY SSF56235 28 553 6.75E-169 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AM354_RS01900 6906e0a0076383fbd2154741a19be6b2 557 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 32 547 8.8E-151 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AM354_RS01900 6906e0a0076383fbd2154741a19be6b2 557 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 236 252 4.1E-72 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AM354_RS01900 6906e0a0076383fbd2154741a19be6b2 557 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 266 285 4.1E-72 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AM354_RS01900 6906e0a0076383fbd2154741a19be6b2 557 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 364 382 4.1E-72 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AM354_RS01900 6906e0a0076383fbd2154741a19be6b2 557 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 388 406 4.1E-72 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AM354_RS01900 6906e0a0076383fbd2154741a19be6b2 557 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 124 142 4.1E-72 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AM354_RS01900 6906e0a0076383fbd2154741a19be6b2 557 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 429 444 4.1E-72 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AM354_RS01900 6906e0a0076383fbd2154741a19be6b2 557 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 52 77 4.1E-72 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AM354_RS01900 6906e0a0076383fbd2154741a19be6b2 557 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 142 161 4.1E-72 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AM354_RS01900 6906e0a0076383fbd2154741a19be6b2 557 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 453 470 4.1E-72 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AM354_RS09045 ea430793d2708da6e5e8dfb9113c691d 571 SUPERFAMILY SSF53850 122 562 1.74E-56 T 29-03-2018 AM354_RS09045 ea430793d2708da6e5e8dfb9113c691d 571 Pfam PF12793 Sugar transport-related sRNA regulator N-term 6 119 1.9E-39 T 29-03-2018 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain AM354_RS09045 ea430793d2708da6e5e8dfb9113c691d 571 Gene3D G3DSA:3.90.76.10 131 250 1.1E-15 T 29-03-2018 AM354_RS09045 ea430793d2708da6e5e8dfb9113c691d 571 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 164 354 1.5E-17 T 29-03-2018 IPR000914 Solute-binding protein family 5 domain AM354_RS09045 ea430793d2708da6e5e8dfb9113c691d 571 Gene3D G3DSA:1.10.10.10 6 110 2.6E-6 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS09045 ea430793d2708da6e5e8dfb9113c691d 571 Gene3D G3DSA:3.10.105.10 390 535 1.5E-6 T 29-03-2018 AM354_RS09045 ea430793d2708da6e5e8dfb9113c691d 571 Gene3D G3DSA:3.40.190.10 251 361 6.2E-6 T 29-03-2018 AM354_RS23890 8385db44c3764f8dbca146aca2405eb2 445 Pfam PF13440 Polysaccharide biosynthesis protein 43 346 1.4E-8 T 29-03-2018 AM354_RS18335 0eea1a694bbcb19deac4eb40ca4fd3fb 699 Pfam PF12696 TraM recognition site of TraD and TraG 505 631 1.2E-10 T 29-03-2018 IPR032689 TraD/TraG, TraM recognition site AM354_RS18335 0eea1a694bbcb19deac4eb40ca4fd3fb 699 TIGRFAM TIGR03743 SXT_TraD: conjugative coupling factor TraD, SXT/TOL subfamily 7 652 3.1E-270 T 29-03-2018 IPR022458 Conjugative coupling factor TraG/TraD AM354_RS18335 0eea1a694bbcb19deac4eb40ca4fd3fb 699 Gene3D G3DSA:3.40.50.300 102 656 3.1E-26 T 29-03-2018 AM354_RS18335 0eea1a694bbcb19deac4eb40ca4fd3fb 699 SUPERFAMILY SSF52540 141 339 4.32E-52 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS18335 0eea1a694bbcb19deac4eb40ca4fd3fb 699 SUPERFAMILY SSF52540 395 650 4.32E-52 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS18335 0eea1a694bbcb19deac4eb40ca4fd3fb 699 TIGRFAM TIGR03754 conj_TOL_TraD: conjugative coupling factor TraD, PFGI-1 class 7 652 0.0 T 29-03-2018 IPR022503 Conjugative coupling factor TraG/TraD, PFGI-1 AM354_RS07260 69a12671b5e22a790f2e1423e9aa7e5d 291 Pfam PF01678 Diaminopimelate epimerase 6 123 2.7E-21 T 29-03-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AM354_RS07260 69a12671b5e22a790f2e1423e9aa7e5d 291 Pfam PF01678 Diaminopimelate epimerase 153 266 2.6E-23 T 29-03-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AM354_RS07260 69a12671b5e22a790f2e1423e9aa7e5d 291 Gene3D G3DSA:3.10.310.10 1 123 2.1E-32 T 29-03-2018 AM354_RS07260 69a12671b5e22a790f2e1423e9aa7e5d 291 SUPERFAMILY SSF54506 5 129 3.19E-28 T 29-03-2018 AM354_RS07260 69a12671b5e22a790f2e1423e9aa7e5d 291 Gene3D G3DSA:3.10.310.10 124 261 3.3E-40 T 29-03-2018 AM354_RS07260 69a12671b5e22a790f2e1423e9aa7e5d 291 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 4 274 30.451 T 29-03-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AM354_RS07260 69a12671b5e22a790f2e1423e9aa7e5d 291 SUPERFAMILY SSF54506 139 271 5.83E-40 T 29-03-2018 AM354_RS07260 69a12671b5e22a790f2e1423e9aa7e5d 291 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 6 268 1.4E-65 T 29-03-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AM354_RS20340 79bd990a8cb3851c037e9f0b3f7cc692 134 Pfam PF16358 RcsF lipoprotein 26 132 2.6E-55 T 29-03-2018 IPR030852 Outer membrane lipoprotein RcsF GO:0009279|GO:0035556 AM354_RS20340 79bd990a8cb3851c037e9f0b3f7cc692 134 Hamap MF_00976 Outer membrane lipoprotein RcsF [rcsF]. 1 133 36.735 T 29-03-2018 IPR030852 Outer membrane lipoprotein RcsF GO:0009279|GO:0035556 AM354_RS10715 e5886fb1316f9763b5382ea48e021d6e 256 Pfam PF09335 SNARE associated Golgi protein 36 159 1.3E-18 T 29-03-2018 IPR032816 SNARE associated Golgi protein AM354_RS24150 2c7d21c70971478cb1983716113c0a03 277 Pfam PF00106 short chain dehydrogenase 5 188 1.3E-47 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS24150 2c7d21c70971478cb1983716113c0a03 277 SUPERFAMILY SSF51735 5 247 2.0E-63 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS24150 2c7d21c70971478cb1983716113c0a03 277 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 2.5E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS24150 2c7d21c70971478cb1983716113c0a03 277 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 2.5E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS24150 2c7d21c70971478cb1983716113c0a03 277 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 2.5E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS24150 2c7d21c70971478cb1983716113c0a03 277 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 137 165 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM354_RS24150 2c7d21c70971478cb1983716113c0a03 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 8.5E-26 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS24150 2c7d21c70971478cb1983716113c0a03 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 8.5E-26 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS24150 2c7d21c70971478cb1983716113c0a03 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 8.5E-26 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS24150 2c7d21c70971478cb1983716113c0a03 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 8.5E-26 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS24150 2c7d21c70971478cb1983716113c0a03 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 8.5E-26 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS24150 2c7d21c70971478cb1983716113c0a03 277 Gene3D G3DSA:3.40.50.720 2 277 6.6E-68 T 29-03-2018 AM354_RS07140 6155b590db14d0b4cad5f9cfa449633c 358 Gene3D G3DSA:1.10.3470.10 42 356 1.4E-27 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS07140 6155b590db14d0b4cad5f9cfa449633c 358 Pfam PF02653 Branched-chain amino acid transport system / permease component 51 340 7.9E-41 T 29-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AM354_RS07140 6155b590db14d0b4cad5f9cfa449633c 358 TIGRFAM TIGR03408 urea_trans_UrtC: urea ABC transporter, permease protein UrtC 42 351 2.2E-130 T 29-03-2018 IPR017778 ABC transporter, urea, permease protein, UrtC AM354_RS17215 5ed68819ba286ed816ae7a2f800fa80f 496 SUPERFAMILY SSF53383 126 486 6.77E-86 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS17215 5ed68819ba286ed816ae7a2f800fa80f 496 Pfam PF00155 Aminotransferase class I and II 157 478 7.6E-24 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM354_RS17215 5ed68819ba286ed816ae7a2f800fa80f 496 SMART SM00345 25 84 2.5E-12 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS17215 5ed68819ba286ed816ae7a2f800fa80f 496 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 44 58 1.4E-5 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS17215 5ed68819ba286ed816ae7a2f800fa80f 496 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 58 74 1.4E-5 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS17215 5ed68819ba286ed816ae7a2f800fa80f 496 Gene3D G3DSA:3.40.640.10 145 389 3.0E-39 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS17215 5ed68819ba286ed816ae7a2f800fa80f 496 Pfam PF00392 Bacterial regulatory proteins, gntR family 23 84 1.6E-13 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM354_RS17215 5ed68819ba286ed816ae7a2f800fa80f 496 Gene3D G3DSA:3.90.1150.10 390 489 5.8E-21 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS17215 5ed68819ba286ed816ae7a2f800fa80f 496 Gene3D G3DSA:1.10.10.10 10 86 2.8E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS17215 5ed68819ba286ed816ae7a2f800fa80f 496 SUPERFAMILY SSF46785 18 86 2.04E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS09135 52d356a1afcd71377f9242eb0ed5065c 463 SUPERFAMILY SSF103473 15 400 1.44E-63 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS09135 52d356a1afcd71377f9242eb0ed5065c 463 Pfam PF07690 Major Facilitator Superfamily 29 363 6.3E-43 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS09135 52d356a1afcd71377f9242eb0ed5065c 463 Gene3D G3DSA:1.20.1250.20 12 207 1.6E-32 T 29-03-2018 AM354_RS09135 52d356a1afcd71377f9242eb0ed5065c 463 Gene3D G3DSA:1.20.1250.20 208 414 3.6E-18 T 29-03-2018 AM354_RS24500 be505ef52ab8387799e57944c0406451 90 Gene3D G3DSA:1.10.10.10 10 90 7.3E-4 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS14230 9b56abf02915e5e56298ecdace461069 553 Pfam PF05170 AsmA family 254 546 1.4E-16 T 29-03-2018 IPR007844 AsmA AM354_RS05945 56aad6d11c74182f5a1f2f4792a615ad 100 Pfam PF07214 Protein of unknown function (DUF1418) 1 93 6.4E-40 T 29-03-2018 IPR010815 Protein of unknown function DUF1418 AM354_RS09940 9d9325acfb35ea659a0f81413feee60a 247 SMART SM00479 7 184 3.7E-52 T 29-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AM354_RS09940 9d9325acfb35ea659a0f81413feee60a 247 Pfam PF00929 Exonuclease 9 175 5.9E-41 T 29-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AM354_RS09940 9d9325acfb35ea659a0f81413feee60a 247 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 6 225 4.4E-90 T 29-03-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS09940 9d9325acfb35ea659a0f81413feee60a 247 Gene3D G3DSA:3.30.420.10 3 191 2.9E-41 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS09940 9d9325acfb35ea659a0f81413feee60a 247 SUPERFAMILY SSF53098 5 183 1.16E-54 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS09940 9d9325acfb35ea659a0f81413feee60a 247 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 7 242 1.1E-94 T 29-03-2018 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS04640 a1b6c84f5ec322a91eea1d039db8e3b8 677 Pfam PF00326 Prolyl oligopeptidase family 461 674 3.8E-70 T 29-03-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 AM354_RS04640 a1b6c84f5ec322a91eea1d039db8e3b8 677 Gene3D G3DSA:3.40.50.1820 1 156 1.0E-24 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS04640 a1b6c84f5ec322a91eea1d039db8e3b8 677 Gene3D G3DSA:3.40.50.1820 252 676 6.6E-65 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS04640 a1b6c84f5ec322a91eea1d039db8e3b8 677 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 530 550 1.1E-55 T 29-03-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AM354_RS04640 a1b6c84f5ec322a91eea1d039db8e3b8 677 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 588 603 1.1E-55 T 29-03-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AM354_RS04640 a1b6c84f5ec322a91eea1d039db8e3b8 677 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 446 464 1.1E-55 T 29-03-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AM354_RS04640 a1b6c84f5ec322a91eea1d039db8e3b8 677 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 606 628 1.1E-55 T 29-03-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AM354_RS04640 a1b6c84f5ec322a91eea1d039db8e3b8 677 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 472 496 1.1E-55 T 29-03-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AM354_RS04640 a1b6c84f5ec322a91eea1d039db8e3b8 677 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 500 519 1.1E-55 T 29-03-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AM354_RS04640 a1b6c84f5ec322a91eea1d039db8e3b8 677 SUPERFAMILY SSF50993 1 406 5.49E-88 T 29-03-2018 AM354_RS04640 a1b6c84f5ec322a91eea1d039db8e3b8 677 SUPERFAMILY SSF53474 414 655 2.34E-48 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS04640 a1b6c84f5ec322a91eea1d039db8e3b8 677 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 5 404 4.0E-103 T 29-03-2018 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 AM354_RS25910 bfa4b4827ea2774fb4b323308d25c658 78 Pfam PF13269 Protein of unknown function (DUF4060) 3 75 2.9E-39 T 29-03-2018 IPR025135 Protein of unknown function DUF4060 AM354_RS16385 679e943e29411c825a65d787bcf56a10 135 PIRSF PIRSF029598 1 135 1.0E-46 T 29-03-2018 IPR009315 Phosphate-starvation-induced PsiE GO:0016021|GO:0016036 AM354_RS16385 679e943e29411c825a65d787bcf56a10 135 Pfam PF06146 Phosphate-starvation-inducible E 60 122 2.2E-16 T 29-03-2018 IPR020948 Phosphate-starvation-induced PsiE-like AM354_RS16385 679e943e29411c825a65d787bcf56a10 135 Hamap MF_01048 Protein PsiE [psiE]. 1 135 25.332 T 29-03-2018 IPR009315 Phosphate-starvation-induced PsiE GO:0016021|GO:0016036 AM354_RS22280 04a3984002d8ef004f4f939559fcaf3e 299 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 5 295 1.7E-86 T 29-03-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 AM354_RS22280 04a3984002d8ef004f4f939559fcaf3e 299 SUPERFAMILY SSF54909 1 297 1.22E-89 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel AM354_RS22280 04a3984002d8ef004f4f939559fcaf3e 299 Pfam PF04261 Dyp-type peroxidase family 5 294 1.7E-92 T 29-03-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 AM354_RS01350 d6c514ea886878d6a2919ff96a4f03df 870 Pfam PF11739 Dicarboxylate transport 658 859 7.1E-66 T 29-03-2018 IPR021730 Dicarboxylate transport AM354_RS11540 82b5bad75c0692f64fc0fe2a6c6befb3 317 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 226 317 2.3E-19 T 29-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal AM354_RS11540 82b5bad75c0692f64fc0fe2a6c6befb3 317 SMART SM00833 226 317 3.3E-11 T 29-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal AM354_RS11540 82b5bad75c0692f64fc0fe2a6c6befb3 317 SUPERFAMILY SSF52540 2 202 1.8E-42 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS11540 82b5bad75c0692f64fc0fe2a6c6befb3 317 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 6 183 2.9E-48 T 29-03-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain AM354_RS11540 82b5bad75c0692f64fc0fe2a6c6befb3 317 Gene3D G3DSA:3.40.50.300 1 202 2.0E-43 T 29-03-2018 AM354_RS11540 82b5bad75c0692f64fc0fe2a6c6befb3 317 Gene3D G3DSA:3.30.1220.10 217 317 1.6E-21 T 29-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal AM354_RS11540 82b5bad75c0692f64fc0fe2a6c6befb3 317 SUPERFAMILY SSF90002 226 316 6.02E-25 T 29-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal AM354_RS15890 cbb75e4617ddcb0bb734e2e6b6873f87 278 Gene3D G3DSA:1.10.3720.10 26 276 1.1E-32 T 29-03-2018 AM354_RS15890 cbb75e4617ddcb0bb734e2e6b6873f87 278 SUPERFAMILY SSF161098 78 260 3.01E-36 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS15890 cbb75e4617ddcb0bb734e2e6b6873f87 278 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 268 3.1E-24 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS16845 ab6b5a40dbd776c9d816735df478dc8f 258 Pfam PF14188 Domain of unknown function (DUF4311) 25 237 1.4E-121 T 29-03-2018 IPR020042 Protein of unknown function DUF4311 AM354_RS16845 ab6b5a40dbd776c9d816735df478dc8f 258 TIGRFAM TIGR03580 EF_0832: conserved hypothetical protein EF_0832/AHA_3913 2 258 3.1E-151 T 29-03-2018 IPR020042 Protein of unknown function DUF4311 AM354_RS19815 b057e32e9a590349aefa5089352ae497 849 Pfam PF13954 PapC N-terminal domain 38 186 2.8E-45 T 29-03-2018 IPR025885 PapC, N-terminal domain GO:0005515 AM354_RS19815 b057e32e9a590349aefa5089352ae497 849 Pfam PF00577 Outer membrane usher protein 203 758 3.4E-196 T 29-03-2018 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 AM354_RS19815 b057e32e9a590349aefa5089352ae497 849 Pfam PF13953 PapC C-terminal domain 767 833 3.3E-24 T 29-03-2018 IPR025949 PapC-like, C-terminal domain AM354_RS19815 b057e32e9a590349aefa5089352ae497 849 SUPERFAMILY SSF141729 64 177 4.58E-31 T 29-03-2018 AM354_RS19815 b057e32e9a590349aefa5089352ae497 849 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 315 325 - T 29-03-2018 IPR018030 Fimbrial membrane usher, conserved site AM354_RS24860 169bed2d1df86779ff5b441d2e6a652a 427 TIGRFAM TIGR00935 2a45: arsenite/antimonite efflux pump membrane protein 2 427 1.3E-213 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS24860 169bed2d1df86779ff5b441d2e6a652a 427 PRINTS PR00758 Arsenical pump membrane protein signature 144 168 1.5E-120 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS24860 169bed2d1df86779ff5b441d2e6a652a 427 PRINTS PR00758 Arsenical pump membrane protein signature 278 302 1.5E-120 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS24860 169bed2d1df86779ff5b441d2e6a652a 427 PRINTS PR00758 Arsenical pump membrane protein signature 397 421 1.5E-120 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS24860 169bed2d1df86779ff5b441d2e6a652a 427 PRINTS PR00758 Arsenical pump membrane protein signature 364 389 1.5E-120 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS24860 169bed2d1df86779ff5b441d2e6a652a 427 PRINTS PR00758 Arsenical pump membrane protein signature 101 125 1.5E-120 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS24860 169bed2d1df86779ff5b441d2e6a652a 427 PRINTS PR00758 Arsenical pump membrane protein signature 177 200 1.5E-120 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS24860 169bed2d1df86779ff5b441d2e6a652a 427 PRINTS PR00758 Arsenical pump membrane protein signature 217 242 1.5E-120 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS24860 169bed2d1df86779ff5b441d2e6a652a 427 PRINTS PR00758 Arsenical pump membrane protein signature 323 345 1.5E-120 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS24860 169bed2d1df86779ff5b441d2e6a652a 427 Pfam PF02040 Arsenical pump membrane protein 5 423 5.3E-157 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS09355 a415ac911a72e2484a51df02bc3fea7d 225 Gene3D G3DSA:3.40.50.1860 159 224 2.7E-5 T 29-03-2018 AM354_RS09355 a415ac911a72e2484a51df02bc3fea7d 225 Gene3D G3DSA:3.40.50.1860 58 158 0.029 T 29-03-2018 AM354_RS09355 a415ac911a72e2484a51df02bc3fea7d 225 Pfam PF07302 AroM protein 6 224 4.5E-81 T 29-03-2018 IPR010843 Uncharacterised protein family AroM AM354_RS09355 a415ac911a72e2484a51df02bc3fea7d 225 ProDom PD037589 AROM ARO OPERON REGULATED BY AROR BIOSYNTHESIS TRANSCRIPTION AMINO AROMATIC 5 223 1.0E-37 T 29-03-2018 IPR010843 Uncharacterised protein family AroM AM354_RS19380 60fdd76d95d4a524be1e72415ae36650 366 Pfam PF13407 Periplasmic binding protein domain 59 306 2.6E-28 T 29-03-2018 IPR025997 Periplasmic binding protein AM354_RS19380 60fdd76d95d4a524be1e72415ae36650 366 Gene3D G3DSA:3.40.50.2300 166 343 1.9E-14 T 29-03-2018 AM354_RS19380 60fdd76d95d4a524be1e72415ae36650 366 Gene3D G3DSA:3.40.50.2300 56 165 1.2E-14 T 29-03-2018 AM354_RS19380 60fdd76d95d4a524be1e72415ae36650 366 SUPERFAMILY SSF53822 55 339 1.46E-38 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS04430 ec1d1707292e5788b703945c27145c54 241 Gene3D G3DSA:3.40.50.150 10 229 2.3E-9 T 29-03-2018 AM354_RS01750 4bdea725481eda2e178d87ec9598c964 461 Gene3D G3DSA:1.20.1250.20 13 212 7.6E-31 T 29-03-2018 AM354_RS01750 4bdea725481eda2e178d87ec9598c964 461 SUPERFAMILY SSF103473 8 438 1.1E-73 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS01750 4bdea725481eda2e178d87ec9598c964 461 Gene3D G3DSA:1.20.1250.20 228 452 1.2E-31 T 29-03-2018 AM354_RS01750 4bdea725481eda2e178d87ec9598c964 461 ProSitePatterns PS00217 Sugar transport proteins signature 2. 115 140 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM354_RS01750 4bdea725481eda2e178d87ec9598c964 461 Pfam PF00083 Sugar (and other) transporter 51 437 8.6E-55 T 29-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AM354_RS02045 1c81fcaf2e837efae488712f14bd3d57 141 PIRSF PIRSF029509 1 140 3.6E-41 T 29-03-2018 IPR016923 Uncharacterised conserved protein UCP029509, membrane AM354_RS09030 c8efcadecc3e7b71bda7c7447b0e09b9 153 Gene3D G3DSA:3.30.70.920 55 148 1.3E-26 T 29-03-2018 AM354_RS09030 c8efcadecc3e7b71bda7c7447b0e09b9 153 SUPERFAMILY SSF46785 2 92 2.46E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS09030 c8efcadecc3e7b71bda7c7447b0e09b9 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 2 18 9.3E-9 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 AM354_RS09030 c8efcadecc3e7b71bda7c7447b0e09b9 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 29 48 9.3E-9 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 AM354_RS09030 c8efcadecc3e7b71bda7c7447b0e09b9 153 Pfam PF01037 Lrp/AsnC ligand binding domain 68 141 2.6E-20 T 29-03-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AM354_RS09030 c8efcadecc3e7b71bda7c7447b0e09b9 153 Gene3D G3DSA:1.10.10.10 3 54 2.9E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS09030 c8efcadecc3e7b71bda7c7447b0e09b9 153 Pfam PF13412 Winged helix-turn-helix DNA-binding 2 49 4.3E-17 T 29-03-2018 AM354_RS09030 c8efcadecc3e7b71bda7c7447b0e09b9 153 SMART SM00344 2 111 8.8E-36 T 29-03-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AM354_RS09030 c8efcadecc3e7b71bda7c7447b0e09b9 153 ProSitePatterns PS00519 AsnC-type HTH domain signature. 20 46 - T 29-03-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site AM354_RS09030 c8efcadecc3e7b71bda7c7447b0e09b9 153 SUPERFAMILY SSF54909 62 151 1.01E-20 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel AM354_RS07600 0125ad481e5127c8008d88c7cc423857 254 SUPERFAMILY SSF54001 2 253 1.42E-75 T 29-03-2018 AM354_RS07600 0125ad481e5127c8008d88c7cc423857 254 Gene3D G3DSA:3.30.2140.10 1 131 3.4E-41 T 29-03-2018 AM354_RS07600 0125ad481e5127c8008d88c7cc423857 254 Gene3D G3DSA:3.30.2140.10 140 254 1.0E-21 T 29-03-2018 AM354_RS07600 0125ad481e5127c8008d88c7cc423857 254 Pfam PF00797 N-acetyltransferase 19 253 4.3E-70 T 29-03-2018 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 AM354_RS07600 0125ad481e5127c8008d88c7cc423857 254 PRINTS PR01543 Arylamine N-acetyltransferase signature 19 42 4.0E-17 T 29-03-2018 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 AM354_RS07600 0125ad481e5127c8008d88c7cc423857 254 PRINTS PR01543 Arylamine N-acetyltransferase signature 43 66 4.0E-17 T 29-03-2018 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 AM354_RS07600 0125ad481e5127c8008d88c7cc423857 254 PRINTS PR01543 Arylamine N-acetyltransferase signature 67 89 4.0E-17 T 29-03-2018 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 AM354_RS07600 0125ad481e5127c8008d88c7cc423857 254 PRINTS PR01543 Arylamine N-acetyltransferase signature 99 124 4.0E-17 T 29-03-2018 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 AM354_RS13165 63c63a9efa5e26ac41392c7b995f973f 359 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 32 347 8.9E-74 T 29-03-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 AM354_RS13165 63c63a9efa5e26ac41392c7b995f973f 359 Gene3D G3DSA:3.20.20.190 26 353 1.5E-63 T 29-03-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 AM354_RS13165 63c63a9efa5e26ac41392c7b995f973f 359 SUPERFAMILY SSF51695 28 352 1.65E-90 T 29-03-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 AM354_RS12950 b5441917c8b7474620334aff0e8488c3 253 Gene3D G3DSA:3.40.50.1580 15 252 5.4E-53 T 29-03-2018 AM354_RS12950 b5441917c8b7474620334aff0e8488c3 253 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 66 81 - T 29-03-2018 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM354_RS12950 b5441917c8b7474620334aff0e8488c3 253 TIGRFAM TIGR01718 Uridine-psphlse: uridine phosphorylase 6 253 2.3E-124 T 29-03-2018 IPR010058 Uridine phosphorylase GO:0004850|GO:0005737|GO:0009166 KEGG: 00240+2.4.2.3|KEGG: 00983+2.4.2.3|MetaCyc: PWY-5532 AM354_RS12950 b5441917c8b7474620334aff0e8488c3 253 SUPERFAMILY SSF53167 6 250 8.51E-73 T 29-03-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AM354_RS12950 b5441917c8b7474620334aff0e8488c3 253 Pfam PF01048 Phosphorylase superfamily 21 244 2.6E-39 T 29-03-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AM354_RS01250 c9dc08ef2eed479f9170c5bf384cbd0f 353 Pfam PF05128 Domain of unknown function (DUF697) 184 342 1.2E-54 T 29-03-2018 IPR021147 Protein of unknown function DUF697 AM354_RS01250 c9dc08ef2eed479f9170c5bf384cbd0f 353 TIGRFAM TIGR01620 hyp_HI0043: TIGR01620 family protein 57 342 3.3E-137 T 29-03-2018 IPR006507 Uncharacterised protein family UPF0283 AM354_RS01250 c9dc08ef2eed479f9170c5bf384cbd0f 353 Hamap MF_01085 UPF0283 membrane protein YcjF [ycjF]. 4 348 38.708 T 29-03-2018 IPR006507 Uncharacterised protein family UPF0283 AM354_RS11900 d26d6ed50b5acc58a1ba3f79b630cbd7 167 SUPERFAMILY SSF55729 1 158 9.91E-22 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS11900 d26d6ed50b5acc58a1ba3f79b630cbd7 167 Pfam PF13508 Acetyltransferase (GNAT) domain 45 124 3.8E-7 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS11900 d26d6ed50b5acc58a1ba3f79b630cbd7 167 Gene3D G3DSA:3.40.630.30 1 127 1.8E-15 T 29-03-2018 AM354_RS23295 96249c202020ec4b3918228399eae9e2 376 ProSitePatterns PS00368 Ribonucleotide reductase small subunit signature. 115 131 - T 29-03-2018 IPR030475 Ribonucleotide reductase small subunit, acitve site KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM354_RS23295 96249c202020ec4b3918228399eae9e2 376 Gene3D G3DSA:1.10.620.20 1 346 7.9E-114 T 29-03-2018 AM354_RS23295 96249c202020ec4b3918228399eae9e2 376 Pfam PF00268 Ribonucleotide reductase, small chain 33 332 1.6E-46 T 29-03-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM354_RS23295 96249c202020ec4b3918228399eae9e2 376 SUPERFAMILY SSF47240 3 340 3.61E-113 T 29-03-2018 IPR009078 Ferritin-like superfamily AM354_RS08960 9f531852845c1ecd8f447383a017bf4c 489 SUPERFAMILY SSF52540 91 481 5.51E-101 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS08960 9f531852845c1ecd8f447383a017bf4c 489 SMART SM00382 237 363 7.8E-8 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS08960 9f531852845c1ecd8f447383a017bf4c 489 Gene3D G3DSA:3.30.450.90 78 209 9.3E-48 T 29-03-2018 AM354_RS08960 9f531852845c1ecd8f447383a017bf4c 489 TIGRFAM TIGR02533 type_II_gspE: type II secretion system protein E 1 481 6.1E-206 T 29-03-2018 IPR013369 Type II secretion system GspE GO:0005524|GO:0008565|GO:0015627|GO:0015628 AM354_RS08960 9f531852845c1ecd8f447383a017bf4c 489 Pfam PF00437 Type II/IV secretion system protein 111 376 1.1E-90 T 29-03-2018 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 AM354_RS08960 9f531852845c1ecd8f447383a017bf4c 489 Gene3D G3DSA:3.40.50.300 210 486 4.5E-65 T 29-03-2018 AM354_RS08960 9f531852845c1ecd8f447383a017bf4c 489 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 304 318 - T 29-03-2018 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 AM354_RS08960 9f531852845c1ecd8f447383a017bf4c 489 SUPERFAMILY SSF160246 1 63 7.32E-11 T 29-03-2018 AM354_RS22335 7d18068a2fa862b3a34c1453831ba77c 322 Gene3D G3DSA:3.40.50.1100 20 133 2.1E-32 T 29-03-2018 AM354_RS22335 7d18068a2fa862b3a34c1453831ba77c 322 TIGRFAM TIGR01136 cysKM: cysteine synthase 10 311 2.4E-137 T 29-03-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 AM354_RS22335 7d18068a2fa862b3a34c1453831ba77c 322 TIGRFAM TIGR01139 cysK: cysteine synthase A 9 311 2.1E-145 T 29-03-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 AM354_RS22335 7d18068a2fa862b3a34c1453831ba77c 322 SUPERFAMILY SSF53686 3 316 2.88E-99 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM354_RS22335 7d18068a2fa862b3a34c1453831ba77c 322 Gene3D G3DSA:3.40.50.1100 134 314 2.8E-61 T 29-03-2018 AM354_RS22335 7d18068a2fa862b3a34c1453831ba77c 322 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 10 299 2.0E-70 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM354_RS22335 7d18068a2fa862b3a34c1453831ba77c 322 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 31 49 - T 29-03-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 AM354_RS24370 4789a32bc7f4e421a8dc7d65b7adf0d0 227 Gene3D G3DSA:1.20.910.10 8 227 3.8E-60 T 29-03-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 AM354_RS24370 4789a32bc7f4e421a8dc7d65b7adf0d0 227 SUPERFAMILY SSF48613 10 223 2.08E-66 T 29-03-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 AM354_RS24370 4789a32bc7f4e421a8dc7d65b7adf0d0 227 Pfam PF03070 TENA/THI-4/PQQC family 17 225 1.3E-44 T 29-03-2018 IPR004305 Thiaminase-2/PQQC AM354_RS11205 6819df22cf409688ba46409eb65aa7a3 246 SUPERFAMILY SSF51735 5 245 2.98E-76 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS11205 6819df22cf409688ba46409eb65aa7a3 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 130 158 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM354_RS11205 6819df22cf409688ba46409eb65aa7a3 246 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 245 4.5E-60 T 29-03-2018 AM354_RS11205 6819df22cf409688ba46409eb65aa7a3 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 162 1.1E-12 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11205 6819df22cf409688ba46409eb65aa7a3 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 69 80 1.1E-12 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11205 6819df22cf409688ba46409eb65aa7a3 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 122 130 1.1E-12 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11205 6819df22cf409688ba46409eb65aa7a3 246 Gene3D G3DSA:3.40.50.720 1 246 1.2E-69 T 29-03-2018 AM354_RS11205 6819df22cf409688ba46409eb65aa7a3 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 69 80 4.6E-40 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11205 6819df22cf409688ba46409eb65aa7a3 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 143 162 4.6E-40 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11205 6819df22cf409688ba46409eb65aa7a3 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 4.6E-40 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11205 6819df22cf409688ba46409eb65aa7a3 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 164 181 4.6E-40 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11205 6819df22cf409688ba46409eb65aa7a3 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 4.6E-40 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11205 6819df22cf409688ba46409eb65aa7a3 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 116 132 4.6E-40 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS10365 83c71b708f4bd60b3fe6593964a3d5bd 511 Hamap MF_00229 Histidine ammonia-lyase [hutH]. 3 504 45.234 T 29-03-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AM354_RS10365 83c71b708f4bd60b3fe6593964a3d5bd 511 Pfam PF00221 Aromatic amino acid lyase 11 471 1.2E-187 T 29-03-2018 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 AM354_RS10365 83c71b708f4bd60b3fe6593964a3d5bd 511 Gene3D G3DSA:1.20.200.10 199 506 1.3E-122 T 29-03-2018 AM354_RS10365 83c71b708f4bd60b3fe6593964a3d5bd 511 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 139 155 - T 29-03-2018 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 Reactome: R-HSA-70921 AM354_RS10365 83c71b708f4bd60b3fe6593964a3d5bd 511 TIGRFAM TIGR01225 hutH: histidine ammonia-lyase 5 506 1.8E-223 T 29-03-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AM354_RS10365 83c71b708f4bd60b3fe6593964a3d5bd 511 SUPERFAMILY SSF48557 4 506 2.51E-194 T 29-03-2018 IPR008948 L-Aspartase-like GO:0003824 AM354_RS10365 83c71b708f4bd60b3fe6593964a3d5bd 511 Gene3D G3DSA:1.10.275.10 2 197 1.1E-72 T 29-03-2018 IPR024083 Fumarase/histidase, N-terminal AM354_RS13375 fda761eb7eb584e75c5fd4f577ee4d7b 108 SUPERFAMILY SSF52833 2 107 1.4E-41 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS13375 fda761eb7eb584e75c5fd4f577ee4d7b 108 PIRSF PIRSF000077 2 108 6.6E-45 T 29-03-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AM354_RS13375 fda761eb7eb584e75c5fd4f577ee4d7b 108 Gene3D G3DSA:3.40.30.10 1 108 1.2E-35 T 29-03-2018 AM354_RS13375 fda761eb7eb584e75c5fd4f577ee4d7b 108 TIGRFAM TIGR01068 thioredoxin: thioredoxin 9 107 3.4E-39 T 29-03-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AM354_RS13375 fda761eb7eb584e75c5fd4f577ee4d7b 108 Pfam PF00085 Thioredoxin 5 106 2.9E-34 T 29-03-2018 IPR013766 Thioredoxin domain GO:0045454 AM354_RS13375 fda761eb7eb584e75c5fd4f577ee4d7b 108 ProSitePatterns PS00194 Thioredoxin family active site. 25 43 - T 29-03-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AM354_RS13375 fda761eb7eb584e75c5fd4f577ee4d7b 108 PRINTS PR00421 Thioredoxin family signature 24 32 3.8E-10 T 29-03-2018 AM354_RS13375 fda761eb7eb584e75c5fd4f577ee4d7b 108 PRINTS PR00421 Thioredoxin family signature 72 83 3.8E-10 T 29-03-2018 AM354_RS13375 fda761eb7eb584e75c5fd4f577ee4d7b 108 PRINTS PR00421 Thioredoxin family signature 32 41 3.8E-10 T 29-03-2018 AM354_RS09095 c529c2f521f51b03a2a8df2fb4472e43 104 PIRSF PIRSF003113 1 99 1.5E-30 T 29-03-2018 IPR002634 BolA protein AM354_RS09095 c529c2f521f51b03a2a8df2fb4472e43 104 SUPERFAMILY SSF82657 1 88 5.23E-29 T 29-03-2018 IPR002634 BolA protein AM354_RS09095 c529c2f521f51b03a2a8df2fb4472e43 104 Pfam PF01722 BolA-like protein 10 83 9.2E-28 T 29-03-2018 IPR002634 BolA protein AM354_RS09095 c529c2f521f51b03a2a8df2fb4472e43 104 Gene3D G3DSA:3.30.300.90 1 90 1.2E-26 T 29-03-2018 AM354_RS23340 07d1ecb6017269f114ecad4195c6d091 376 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 52 63 3.1E-16 T 29-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM354_RS23340 07d1ecb6017269f114ecad4195c6d091 376 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 328 345 3.1E-16 T 29-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM354_RS23340 07d1ecb6017269f114ecad4195c6d091 376 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 151 162 3.1E-16 T 29-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM354_RS23340 07d1ecb6017269f114ecad4195c6d091 376 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 95 105 3.1E-16 T 29-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM354_RS23340 07d1ecb6017269f114ecad4195c6d091 376 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 238 250 3.1E-16 T 29-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM354_RS23340 07d1ecb6017269f114ecad4195c6d091 376 PRINTS PR00183 E.coli/Salmonella-type porin signature 95 117 1.9E-67 T 29-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM354_RS23340 07d1ecb6017269f114ecad4195c6d091 376 PRINTS PR00183 E.coli/Salmonella-type porin signature 149 171 1.9E-67 T 29-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM354_RS23340 07d1ecb6017269f114ecad4195c6d091 376 PRINTS PR00183 E.coli/Salmonella-type porin signature 278 297 1.9E-67 T 29-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM354_RS23340 07d1ecb6017269f114ecad4195c6d091 376 PRINTS PR00183 E.coli/Salmonella-type porin signature 244 261 1.9E-67 T 29-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM354_RS23340 07d1ecb6017269f114ecad4195c6d091 376 PRINTS PR00183 E.coli/Salmonella-type porin signature 51 69 1.9E-67 T 29-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM354_RS23340 07d1ecb6017269f114ecad4195c6d091 376 PRINTS PR00183 E.coli/Salmonella-type porin signature 22 38 1.9E-67 T 29-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM354_RS23340 07d1ecb6017269f114ecad4195c6d091 376 Pfam PF00267 Gram-negative porin 27 376 4.2E-129 T 29-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM354_RS23340 07d1ecb6017269f114ecad4195c6d091 376 ProSitePatterns PS00576 General diffusion Gram-negative porins signature. 328 344 - T 29-03-2018 IPR013793 Porin, Gram-negative type, conserved site AM354_RS23340 07d1ecb6017269f114ecad4195c6d091 376 Gene3D G3DSA:2.40.160.10 32 376 2.6E-46 T 29-03-2018 AM354_RS23340 07d1ecb6017269f114ecad4195c6d091 376 SUPERFAMILY SSF56935 22 376 4.19E-76 T 29-03-2018 AM354_RS19640 c1c94338f5f91a5dcab7ee68318e32e6 577 SUPERFAMILY SSF64182 48 466 4.84E-118 T 29-03-2018 AM354_RS19640 c1c94338f5f91a5dcab7ee68318e32e6 577 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 24 573 8.2E-162 T 29-03-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 AM354_RS19640 c1c94338f5f91a5dcab7ee68318e32e6 577 Pfam PF01368 DHH family 74 201 4.8E-9 T 29-03-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AM354_RS19640 c1c94338f5f91a5dcab7ee68318e32e6 577 Pfam PF02272 DHHA1 domain 322 452 9.1E-27 T 29-03-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 AM354_RS19640 c1c94338f5f91a5dcab7ee68318e32e6 577 Gene3D G3DSA:3.90.1640.10 53 345 8.4E-25 T 29-03-2018 AM354_RS22430 a44807928db493847bd287d4c5f5dfc3 345 Pfam PF01032 FecCD transport family 35 341 3.5E-82 T 29-03-2018 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 AM354_RS22430 a44807928db493847bd287d4c5f5dfc3 345 SUPERFAMILY SSF81345 16 341 1.31E-72 T 29-03-2018 IPR029022 ABC transporter, BtuC-like AM354_RS22430 a44807928db493847bd287d4c5f5dfc3 345 Gene3D G3DSA:1.10.3470.10 20 345 4.3E-64 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS03260 4e68854a22b8ba4b6bc1df5deb99490e 273 SUPERFAMILY SSF47454 173 230 6.02E-5 T 29-03-2018 IPR008917 Transcription factor, Skn-1-like, DNA-binding domain GO:0003677|GO:0006355 AM354_RS03260 4e68854a22b8ba4b6bc1df5deb99490e 273 Hamap MF_01062 Phosphoenolpyruvate synthase regulatory protein [ppsR]. 2 272 73.591 T 29-03-2018 IPR026530 Phosphoenolpyruvate synthase regulatory protein AM354_RS03260 4e68854a22b8ba4b6bc1df5deb99490e 273 Pfam PF03618 Kinase/pyrophosphorylase 5 263 6.0E-74 T 29-03-2018 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 AM354_RS03260 4e68854a22b8ba4b6bc1df5deb99490e 273 Gene3D G3DSA:3.40.50.300 188 271 0.001 T 29-03-2018 AM354_RS03260 4e68854a22b8ba4b6bc1df5deb99490e 273 Gene3D G3DSA:3.40.50.300 147 187 0.37 T 29-03-2018 AM354_RS04175 dab0ddc8156d57e152fdbc8404a60143 622 Pfam PF02705 K+ potassium transporter 14 544 7.6E-208 T 29-03-2018 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 AM354_RS04175 dab0ddc8156d57e152fdbc8404a60143 622 TIGRFAM TIGR00794 kup: potassium uptake protein 103 549 3.0E-168 T 29-03-2018 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 AM354_RS04175 dab0ddc8156d57e152fdbc8404a60143 622 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 5 622 33.548 T 29-03-2018 IPR023051 Potassium uptake protein, low affinity, Kup AM354_RS06165 6a1ac261f08c5e67a56f148fa28321d6 274 Gene3D G3DSA:3.40.50.720 1 139 4.1E-18 T 29-03-2018 AM354_RS06165 6a1ac261f08c5e67a56f148fa28321d6 274 Pfam PF01370 NAD dependent epimerase/dehydratase family 9 213 5.1E-7 T 29-03-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AM354_RS06165 6a1ac261f08c5e67a56f148fa28321d6 274 SUPERFAMILY SSF51735 2 266 5.05E-32 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS06165 6a1ac261f08c5e67a56f148fa28321d6 274 Gene3D G3DSA:3.90.25.10 140 270 1.3E-9 T 29-03-2018 AM354_RS06965 a7c341dca443285eb209edd0e7b6b336 172 Pfam PF13673 Acetyltransferase (GNAT) domain 56 149 4.3E-14 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS06965 a7c341dca443285eb209edd0e7b6b336 172 Gene3D G3DSA:3.40.630.30 1 172 1.6E-33 T 29-03-2018 AM354_RS06965 a7c341dca443285eb209edd0e7b6b336 172 SUPERFAMILY SSF55729 16 170 2.19E-28 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS13560 84d66bf33873f480c008fd697faddff3 170 Pfam PF06127 Protein of unknown function (DUF962) 1 145 3.5E-25 T 29-03-2018 IPR009305 Protein of unknown function DUF962 AM354_RS09675 c984597821aff088ffdf918c9cf39c4a 263 SUPERFAMILY SSF51735 1 204 1.41E-35 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS09675 c984597821aff088ffdf918c9cf39c4a 263 Pfam PF13460 NAD(P)H-binding 7 192 3.7E-37 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS09675 c984597821aff088ffdf918c9cf39c4a 263 Gene3D G3DSA:3.40.50.720 1 222 2.3E-27 T 29-03-2018 AM354_RS19695 925da4ab1038a8e04497553bf8039bcf 225 Gene3D G3DSA:3.40.50.850 7 215 1.6E-37 T 29-03-2018 AM354_RS19695 925da4ab1038a8e04497553bf8039bcf 225 Pfam PF00857 Isochorismatase family 20 172 6.6E-21 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM354_RS19695 925da4ab1038a8e04497553bf8039bcf 225 SUPERFAMILY SSF52499 12 208 8.37E-46 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM354_RS20605 6ce71e3ec021bc194d898969cc810c96 171 Pfam PF07566 Domain of Unknown Function (DUF1543) 91 146 1.7E-14 T 29-03-2018 IPR011440 Domain of unknown function DUF1543 AM354_RS20605 6ce71e3ec021bc194d898969cc810c96 171 Pfam PF07566 Domain of Unknown Function (DUF1543) 16 67 2.8E-19 T 29-03-2018 IPR011440 Domain of unknown function DUF1543 AM354_RS20605 6ce71e3ec021bc194d898969cc810c96 171 Gene3D G3DSA:3.10.20.10 2 61 1.3E-20 T 29-03-2018 AM354_RS20605 6ce71e3ec021bc194d898969cc810c96 171 Gene3D G3DSA:3.50.100.10 62 153 3.1E-29 T 29-03-2018 AM354_RS20335 dec62068c22c5b63d437798f380b4c33 235 Pfam PF01980 Uncharacterised protein family UPF0066 21 142 4.4E-38 T 29-03-2018 IPR023370 TsaA-like domain AM354_RS20335 dec62068c22c5b63d437798f380b4c33 235 Gene3D G3DSA:2.40.30.70 5 149 1.7E-50 T 29-03-2018 IPR023370 TsaA-like domain AM354_RS20335 dec62068c22c5b63d437798f380b4c33 235 Gene3D G3DSA:3.30.2310.10 150 231 2.2E-25 T 29-03-2018 AM354_RS20335 dec62068c22c5b63d437798f380b4c33 235 SUPERFAMILY SSF118196 1 230 3.79E-84 T 29-03-2018 IPR023370 TsaA-like domain AM354_RS20335 dec62068c22c5b63d437798f380b4c33 235 TIGRFAM TIGR00104 tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 2 149 2.2E-55 T 29-03-2018 IPR023370 TsaA-like domain AM354_RS20335 dec62068c22c5b63d437798f380b4c33 235 ProSitePatterns PS01318 TsaA-like domain signature. 87 98 - T 29-03-2018 IPR023368 Uncharacterised protein family UPF0066, conserved site AM354_RS18760 f9542fd5e9ea3b579f913939c01deb9f 227 Gene3D G3DSA:3.40.50.150 100 212 7.0E-11 T 29-03-2018 AM354_RS18760 f9542fd5e9ea3b579f913939c01deb9f 227 Pfam PF02384 N-6 DNA Methylase 99 201 4.1E-6 T 29-03-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 AM354_RS18760 f9542fd5e9ea3b579f913939c01deb9f 227 SUPERFAMILY SSF53335 82 201 1.74E-16 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS18760 f9542fd5e9ea3b579f913939c01deb9f 227 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 102 118 7.8E-5 T 29-03-2018 AM354_RS18760 f9542fd5e9ea3b579f913939c01deb9f 227 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 134 148 7.8E-5 T 29-03-2018 AM354_RS15140 b460ceadfb51e33fe73d514e155c95c7 77 ProSitePatterns PS01030 RNA polymerases M / 15 Kd subunits signature. 36 61 - T 29-03-2018 IPR019761 DNA-directed RNA polymerase M, 15kDa subunit, conserved site AM354_RS15140 b460ceadfb51e33fe73d514e155c95c7 77 TIGRFAM TIGR02419 C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger protein, TraR family 3 66 2.1E-18 T 29-03-2018 IPR012783 Zinc finger, C4 DksA/TraR-type AM354_RS15140 b460ceadfb51e33fe73d514e155c95c7 77 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 34 67 1.3E-11 T 29-03-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 AM354_RS15140 b460ceadfb51e33fe73d514e155c95c7 77 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 37 61 - T 29-03-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site AM354_RS15140 b460ceadfb51e33fe73d514e155c95c7 77 SUPERFAMILY SSF57716 34 70 6.18E-9 T 29-03-2018 AM354_RS05705 113e862710f4a7cc788da87109c43584 760 ProSitePatterns PS00850 Glycine radical domain signature. 730 738 - T 29-03-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site AM354_RS05705 113e862710f4a7cc788da87109c43584 760 TIGRFAM TIGR01255 pyr_form_ly_1: formate acetyltransferase 11 760 0.0 T 29-03-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 AM354_RS05705 113e862710f4a7cc788da87109c43584 760 Gene3D G3DSA:3.20.70.20 2 760 1.6E-293 T 29-03-2018 AM354_RS05705 113e862710f4a7cc788da87109c43584 760 SUPERFAMILY SSF51998 4 759 1.34E-290 T 29-03-2018 AM354_RS05705 113e862710f4a7cc788da87109c43584 760 PIRSF PIRSF000379 8 760 0.0 T 29-03-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 AM354_RS05705 113e862710f4a7cc788da87109c43584 760 Pfam PF01228 Glycine radical 630 741 5.9E-43 T 29-03-2018 IPR001150 Glycine radical domain GO:0003824|GO:0008152 AM354_RS05705 113e862710f4a7cc788da87109c43584 760 Pfam PF02901 Pyruvate formate lyase-like 23 614 2.5E-207 T 29-03-2018 IPR004184 Pyruvate formate lyase domain GO:0003824 AM354_RS09845 932ccf56b8d74a654e46025e19e14a4a 449 Gene3D G3DSA:2.40.50.100 38 102 4.0E-5 T 29-03-2018 AM354_RS09845 932ccf56b8d74a654e46025e19e14a4a 449 Pfam PF11973 NQRA C-terminal domain 264 313 3.5E-22 T 29-03-2018 IPR022615 Na(+)-translocating NADH-quinone reductase subunit A, C-terminal domain GO:0016655|GO:0055114 AM354_RS09845 932ccf56b8d74a654e46025e19e14a4a 449 Hamap MF_00425 Na(+)-translocating NADH-quinone reductase subunit A [nqrA]. 1 449 47.276 T 29-03-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 AM354_RS09845 932ccf56b8d74a654e46025e19e14a4a 449 Pfam PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) 1 259 1.1E-114 T 29-03-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 AM354_RS09845 932ccf56b8d74a654e46025e19e14a4a 449 TIGRFAM TIGR01936 nqrA: NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit 2 449 3.8E-185 T 29-03-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 AM354_RS01530 7490dc1c170bbb0aa5c1b480865312f8 278 Gene3D G3DSA:3.40.710.10 25 277 1.9E-38 T 29-03-2018 AM354_RS01530 7490dc1c170bbb0aa5c1b480865312f8 278 SUPERFAMILY SSF56601 14 272 1.24E-55 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM354_RS01530 7490dc1c170bbb0aa5c1b480865312f8 278 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 32 260 2.2E-58 T 29-03-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 AM354_RS01530 7490dc1c170bbb0aa5c1b480865312f8 278 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 144 157 2.9E-13 T 29-03-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AM354_RS01530 7490dc1c170bbb0aa5c1b480865312f8 278 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 117 134 2.9E-13 T 29-03-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AM354_RS01530 7490dc1c170bbb0aa5c1b480865312f8 278 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 67 78 2.9E-13 T 29-03-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AM354_RS00150 0014686ed4a601e6078c619bbd433094 562 Gene3D G3DSA:3.30.300.30 455 559 5.7E-27 T 29-03-2018 AM354_RS00150 0014686ed4a601e6078c619bbd433094 562 Pfam PF13193 AMP-binding enzyme C-terminal domain 469 543 2.7E-18 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain AM354_RS00150 0014686ed4a601e6078c619bbd433094 562 ProSitePatterns PS00455 Putative AMP-binding domain signature. 211 222 - T 29-03-2018 IPR020845 AMP-binding, conserved site AM354_RS00150 0014686ed4a601e6078c619bbd433094 562 SUPERFAMILY SSF56801 21 553 2.62E-150 T 29-03-2018 AM354_RS00150 0014686ed4a601e6078c619bbd433094 562 Gene3D G3DSA:3.40.50.980 218 371 7.1E-37 T 29-03-2018 AM354_RS00150 0014686ed4a601e6078c619bbd433094 562 Pfam PF00501 AMP-binding enzyme 29 460 1.8E-109 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM354_RS00150 0014686ed4a601e6078c619bbd433094 562 Gene3D G3DSA:2.30.38.10 372 453 7.8E-29 T 29-03-2018 AM354_RS00150 0014686ed4a601e6078c619bbd433094 562 Gene3D G3DSA:3.40.50.980 20 217 5.0E-43 T 29-03-2018 AM354_RS17390 19981411ea59f9593032176a9429e8f8 275 Hamap MF_00905 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA [cpdA]. 15 261 40.527 T 29-03-2018 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA GO:0004115 KEGG: 00230+3.1.4.53 AM354_RS17390 19981411ea59f9593032176a9429e8f8 275 Gene3D G3DSA:3.60.21.10 3 270 2.1E-39 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like AM354_RS17390 19981411ea59f9593032176a9429e8f8 275 ProDom PD587589 PHOSPHODIESTERASE ICC METALLOPHOSPHOESTERASE CYCLIC REGULATOR LACZ AMP HYDROLASE 3'5'-CYCLIC-NUCLEOTIDE EXPRESSION 206 261 6.0E-23 T 29-03-2018 IPR013622 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, C-terminal KEGG: 00230+3.1.4.53 AM354_RS17390 19981411ea59f9593032176a9429e8f8 275 SUPERFAMILY SSF56300 16 273 3.12E-61 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like AM354_RS17390 19981411ea59f9593032176a9429e8f8 275 Pfam PF00149 Calcineurin-like phosphoesterase 16 207 5.5E-20 T 29-03-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AM354_RS15350 7f5737442c2f96ecea505b3ec92b3b0f 273 Pfam PF04962 KduI/IolB family 5 264 1.5E-110 T 29-03-2018 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 AM354_RS15350 7f5737442c2f96ecea505b3ec92b3b0f 273 Gene3D G3DSA:2.60.120.10 123 268 8.2E-58 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS15350 7f5737442c2f96ecea505b3ec92b3b0f 273 Gene3D G3DSA:2.60.120.10 17 122 3.7E-37 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS15350 7f5737442c2f96ecea505b3ec92b3b0f 273 SUPERFAMILY SSF51182 17 253 1.25E-68 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS15350 7f5737442c2f96ecea505b3ec92b3b0f 273 TIGRFAM TIGR04378 myo_inos_iolB: 5-deoxy-glucuronate isomerase 18 264 2.8E-101 T 29-03-2018 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30 AM354_RS15350 7f5737442c2f96ecea505b3ec92b3b0f 273 PIRSF PIRSF036628 1 269 8.4E-110 T 29-03-2018 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30 AM354_RS16005 0011b8363208cfdf6bd3f39248689f62 209 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 3 204 2.6E-92 T 29-03-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS16005 0011b8363208cfdf6bd3f39248689f62 209 ProSitePatterns PS00474 Ribosomal protein L3 signature. 101 124 - T 29-03-2018 IPR019926 Ribosomal protein L3, conserved site AM354_RS16005 0011b8363208cfdf6bd3f39248689f62 209 Pfam PF00297 Ribosomal protein L3 66 182 1.5E-12 T 29-03-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS16005 0011b8363208cfdf6bd3f39248689f62 209 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 1 207 40.924 T 29-03-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS16005 0011b8363208cfdf6bd3f39248689f62 209 SUPERFAMILY SSF50447 1 208 2.21E-79 T 29-03-2018 IPR009000 Translation protein, beta-barrel domain AM354_RS16005 0011b8363208cfdf6bd3f39248689f62 209 Gene3D G3DSA:4.10.960.10 57 165 2.1E-35 T 29-03-2018 AM354_RS20250 e30f2a260dd4453a6405ca30274f20e0 1162 Pfam PF02811 PHP domain 8 171 6.0E-42 T 29-03-2018 IPR004013 PHP domain GO:0003824 AM354_RS20250 e30f2a260dd4453a6405ca30274f20e0 1162 Pfam PF14579 Helix-hairpin-helix motif 808 899 9.6E-23 T 29-03-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS20250 e30f2a260dd4453a6405ca30274f20e0 1162 Pfam PF01336 OB-fold nucleic acid binding domain 1002 1073 1.9E-7 T 29-03-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 AM354_RS20250 e30f2a260dd4453a6405ca30274f20e0 1162 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 6 1033 0.0 T 29-03-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS20250 e30f2a260dd4453a6405ca30274f20e0 1162 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 295 734 8.8E-177 T 29-03-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM354_RS20250 e30f2a260dd4453a6405ca30274f20e0 1162 Gene3D G3DSA:3.20.20.140 1 246 1.3E-37 T 29-03-2018 AM354_RS20250 e30f2a260dd4453a6405ca30274f20e0 1162 Gene3D G3DSA:1.10.150.280 781 896 6.4E-8 T 29-03-2018 AM354_RS20250 e30f2a260dd4453a6405ca30274f20e0 1162 SUPERFAMILY SSF89550 6 263 1.0E-13 T 29-03-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 AM354_RS20250 e30f2a260dd4453a6405ca30274f20e0 1162 SMART SM00481 7 74 2.9E-24 T 29-03-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal AM354_RS20250 e30f2a260dd4453a6405ca30274f20e0 1162 Gene3D G3DSA:2.40.50.140 981 1076 2.2E-15 T 29-03-2018 AM354_RS05185 655b4e8898cdc416bc4b011fc4345739 538 Gene3D G3DSA:3.40.605.10 3 285 1.7E-47 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM354_RS05185 655b4e8898cdc416bc4b011fc4345739 538 Pfam PF00171 Aldehyde dehydrogenase family 41 464 1.4E-45 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM354_RS05185 655b4e8898cdc416bc4b011fc4345739 538 SUPERFAMILY SSF53720 30 525 2.36E-93 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM354_RS05185 655b4e8898cdc416bc4b011fc4345739 538 Gene3D G3DSA:3.40.309.10 286 460 9.2E-21 T 29-03-2018 AM354_RS11910 8253a8f7d586c00bda2b7506cb0d535b 331 SUPERFAMILY SSF51391 11 161 5.49E-5 T 29-03-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AM354_RS11910 8253a8f7d586c00bda2b7506cb0d535b 331 ProSitePatterns PS01276 Peptidase family U32 signature. 161 179 - T 29-03-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 AM354_RS11910 8253a8f7d586c00bda2b7506cb0d535b 331 Gene3D G3DSA:3.20.20.150 9 302 1.1E-20 T 29-03-2018 AM354_RS11910 8253a8f7d586c00bda2b7506cb0d535b 331 Pfam PF01136 Peptidase family U32 76 330 1.5E-65 T 29-03-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 AM354_RS16275 4cbf914266cf1940dd5330af9900e3fc 179 TIGRFAM TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family 9 169 1.4E-63 T 29-03-2018 IPR006001 Carbohydrate kinase, thermoresistant glucokinase GO:0005975|GO:0016301 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530 AM354_RS16275 4cbf914266cf1940dd5330af9900e3fc 179 Pfam PF01202 Shikimate kinase 15 166 2.2E-9 T 29-03-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 AM354_RS16275 4cbf914266cf1940dd5330af9900e3fc 179 Gene3D G3DSA:3.40.50.300 5 176 9.7E-24 T 29-03-2018 AM354_RS16275 4cbf914266cf1940dd5330af9900e3fc 179 SUPERFAMILY SSF52540 1 170 7.79E-25 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS12115 e5ed492176990a0d9a8d710321dcb04b 118 Pfam PF02316 Mu DNA-binding domain 9 99 2.1E-14 T 29-03-2018 IPR003314 Mu-type HTH domain GO:0003677 AM354_RS12115 e5ed492176990a0d9a8d710321dcb04b 118 SUPERFAMILY SSF46955 3 71 9.16E-23 T 29-03-2018 IPR009061 Putative DNA-binding domain AM354_RS12115 e5ed492176990a0d9a8d710321dcb04b 118 Gene3D G3DSA:1.10.10.10 3 69 4.8E-28 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS12115 e5ed492176990a0d9a8d710321dcb04b 118 ProDom PD060594 TRANSCRIPTION YFED YFEC DNA-BINDING REGULATION NEGATIVE REGULATOR STY2653 ECS3274 STY2652 6 112 3.0E-5 T 29-03-2018 IPR010749 Protein of unknown function DUF1323 AM354_RS24520 d7349ab5771e5a53a8244ecc25ab50af 252 SUPERFAMILY SSF49584 154 244 1.14E-25 T 29-03-2018 IPR016148 Pili assembly chaperone, C-terminal AM354_RS24520 d7349ab5771e5a53a8244ecc25ab50af 252 PRINTS PR00969 Pili chaperone signature 165 180 9.2E-35 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS24520 d7349ab5771e5a53a8244ecc25ab50af 252 PRINTS PR00969 Pili chaperone signature 103 120 9.2E-35 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS24520 d7349ab5771e5a53a8244ecc25ab50af 252 PRINTS PR00969 Pili chaperone signature 126 141 9.2E-35 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS24520 d7349ab5771e5a53a8244ecc25ab50af 252 PRINTS PR00969 Pili chaperone signature 27 36 9.2E-35 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS24520 d7349ab5771e5a53a8244ecc25ab50af 252 PRINTS PR00969 Pili chaperone signature 73 94 9.2E-35 T 29-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM354_RS24520 d7349ab5771e5a53a8244ecc25ab50af 252 Gene3D G3DSA:2.60.40.10 150 243 1.5E-24 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS24520 d7349ab5771e5a53a8244ecc25ab50af 252 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 170 231 8.7E-17 T 29-03-2018 IPR016148 Pili assembly chaperone, C-terminal AM354_RS24520 d7349ab5771e5a53a8244ecc25ab50af 252 SUPERFAMILY SSF49354 27 144 2.38E-39 T 29-03-2018 IPR008962 PapD-like AM354_RS24520 d7349ab5771e5a53a8244ecc25ab50af 252 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 102 119 - T 29-03-2018 IPR018046 Pili assembly chaperone, conserved site AM354_RS24520 d7349ab5771e5a53a8244ecc25ab50af 252 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 27 144 3.0E-38 T 29-03-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 AM354_RS24520 d7349ab5771e5a53a8244ecc25ab50af 252 Gene3D G3DSA:2.60.40.10 26 145 2.2E-36 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS06245 5bf331bccefadd75cf32869729f3c055 264 PRINTS PR00164 ABC-2 type transport system membrane protein signature 182 201 7.5E-6 T 29-03-2018 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AM354_RS06245 5bf331bccefadd75cf32869729f3c055 264 PRINTS PR00164 ABC-2 type transport system membrane protein signature 34 55 7.5E-6 T 29-03-2018 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AM354_RS06245 5bf331bccefadd75cf32869729f3c055 264 PRINTS PR00164 ABC-2 type transport system membrane protein signature 145 169 7.5E-6 T 29-03-2018 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AM354_RS06245 5bf331bccefadd75cf32869729f3c055 264 Pfam PF01061 ABC-2 type transporter 15 224 8.4E-27 T 29-03-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 AM354_RS21260 3742bbec4454063a30591203d4f5ca17 66 Gene3D G3DSA:1.10.10.600 2 64 1.6E-33 T 29-03-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 AM354_RS21260 3742bbec4454063a30591203d4f5ca17 66 PIRSF PIRSF039003 3 66 1.2E-32 T 29-03-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 AM354_RS21260 3742bbec4454063a30591203d4f5ca17 66 Pfam PF04384 Iron-sulphur cluster assembly 3 66 7.1E-32 T 29-03-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 AM354_RS21260 3742bbec4454063a30591203d4f5ca17 66 TIGRFAM TIGR03412 iscX_yfhJ: FeS assembly protein IscX 4 66 1.9E-32 T 29-03-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 AM354_RS21260 3742bbec4454063a30591203d4f5ca17 66 SUPERFAMILY SSF140319 3 64 1.22E-26 T 29-03-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 AM354_RS17605 a13bc4db80ade1ec44f4c4dd7cc429e0 401 PIRSF PIRSF004810 1 401 2.9E-133 T 29-03-2018 IPR014047 Chromate transporter, long chain AM354_RS17605 a13bc4db80ade1ec44f4c4dd7cc429e0 401 Pfam PF02417 Chromate transporter 12 177 6.1E-33 T 29-03-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 AM354_RS17605 a13bc4db80ade1ec44f4c4dd7cc429e0 401 Pfam PF02417 Chromate transporter 228 395 3.6E-41 T 29-03-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 AM354_RS17605 a13bc4db80ade1ec44f4c4dd7cc429e0 401 TIGRFAM TIGR00937 2A51: chromate efflux transporter 18 394 5.3E-103 T 29-03-2018 IPR014047 Chromate transporter, long chain AM354_RS21845 9b65a5a4c3977a254f7b6c0935f1c631 188 Gene3D G3DSA:3.40.630.30 1 188 7.5E-32 T 29-03-2018 AM354_RS21845 9b65a5a4c3977a254f7b6c0935f1c631 188 Pfam PF13302 Acetyltransferase (GNAT) domain 11 152 5.3E-36 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS21845 9b65a5a4c3977a254f7b6c0935f1c631 188 SUPERFAMILY SSF55729 2 157 4.5E-41 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS21160 3be7bef67cc2b69737ce0ea5b21a72dd 314 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 107 308 4.4E-16 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS21160 3be7bef67cc2b69737ce0ea5b21a72dd 314 Gene3D G3DSA:1.10.3720.10 29 310 5.9E-36 T 29-03-2018 AM354_RS21160 3be7bef67cc2b69737ce0ea5b21a72dd 314 SUPERFAMILY SSF161098 31 308 7.33E-44 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS25190 d75b1b9fa33e384b00838b21d03bb20b 139 SUPERFAMILY SSF52402 3 138 1.26E-17 T 29-03-2018 AM354_RS25190 d75b1b9fa33e384b00838b21d03bb20b 139 Gene3D G3DSA:3.40.50.620 2 139 3.2E-14 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS25190 d75b1b9fa33e384b00838b21d03bb20b 139 Pfam PF00582 Universal stress protein family 2 138 1.7E-10 T 29-03-2018 IPR006016 UspA GO:0006950 AM354_RS25190 d75b1b9fa33e384b00838b21d03bb20b 139 PIRSF PIRSF006276 1 139 5.2E-37 T 29-03-2018 IPR006015 Universal stress protein A AM354_RS17875 75d5b5ee46f224d08b13ce324c725643 298 Gene3D G3DSA:2.40.128.130 77 294 8.4E-6 T 29-03-2018 AM354_RS17875 75d5b5ee46f224d08b13ce324c725643 298 Pfam PF05275 Copper resistance protein B precursor (CopB) 93 298 3.6E-87 T 29-03-2018 IPR007939 Copper resistance B precursor GO:0005507|GO:0006878|GO:0009279 AM354_RS17160 61b4019eb9d8455ceeb48aa646f1cf6a 432 SUPERFAMILY SSF103473 3 413 3.27E-79 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS17160 61b4019eb9d8455ceeb48aa646f1cf6a 432 Gene3D G3DSA:1.20.1250.20 1 202 1.0E-40 T 29-03-2018 AM354_RS17160 61b4019eb9d8455ceeb48aa646f1cf6a 432 Pfam PF07690 Major Facilitator Superfamily 17 311 6.7E-49 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS17160 61b4019eb9d8455ceeb48aa646f1cf6a 432 Gene3D G3DSA:1.20.1250.20 214 424 2.4E-22 T 29-03-2018 AM354_RS25835 42488d24fb4e78f711526b1d2d67acbc 360 SUPERFAMILY SSF56935 23 360 7.94E-78 T 29-03-2018 AM354_RS25835 42488d24fb4e78f711526b1d2d67acbc 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 239 256 7.4E-69 T 29-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM354_RS25835 42488d24fb4e78f711526b1d2d67acbc 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 152 174 7.4E-69 T 29-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM354_RS25835 42488d24fb4e78f711526b1d2d67acbc 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 271 290 7.4E-69 T 29-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM354_RS25835 42488d24fb4e78f711526b1d2d67acbc 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 52 70 7.4E-69 T 29-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM354_RS25835 42488d24fb4e78f711526b1d2d67acbc 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 97 119 7.4E-69 T 29-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM354_RS25835 42488d24fb4e78f711526b1d2d67acbc 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 23 39 7.4E-69 T 29-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM354_RS25835 42488d24fb4e78f711526b1d2d67acbc 360 Gene3D G3DSA:2.40.160.10 33 360 1.8E-51 T 29-03-2018 AM354_RS25835 42488d24fb4e78f711526b1d2d67acbc 360 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 97 107 4.0E-15 T 29-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM354_RS25835 42488d24fb4e78f711526b1d2d67acbc 360 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 315 332 4.0E-15 T 29-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM354_RS25835 42488d24fb4e78f711526b1d2d67acbc 360 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 53 64 4.0E-15 T 29-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM354_RS25835 42488d24fb4e78f711526b1d2d67acbc 360 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 233 245 4.0E-15 T 29-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM354_RS25835 42488d24fb4e78f711526b1d2d67acbc 360 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 154 165 4.0E-15 T 29-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM354_RS25835 42488d24fb4e78f711526b1d2d67acbc 360 Pfam PF00267 Gram-negative porin 28 360 1.9E-143 T 29-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM354_RS01665 b4559594c5701610ae11a9debad52a6f 498 SUPERFAMILY SSF53474 399 459 3.82E-21 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS01665 b4559594c5701610ae11a9debad52a6f 498 SUPERFAMILY SSF53474 181 241 3.82E-21 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS01665 b4559594c5701610ae11a9debad52a6f 498 SUPERFAMILY SSF53474 323 356 3.82E-21 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS01665 b4559594c5701610ae11a9debad52a6f 498 SUPERFAMILY SSF53474 82 141 3.82E-21 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS01665 b4559594c5701610ae11a9debad52a6f 498 Gene3D G3DSA:3.40.50.1820 77 486 2.5E-34 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS01665 b4559594c5701610ae11a9debad52a6f 498 Pfam PF00561 alpha/beta hydrolase fold 97 470 2.4E-34 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS08280 17c8c97cc72ca842e52006e6611652a4 351 Gene3D G3DSA:3.40.50.300 114 320 1.7E-28 T 29-03-2018 AM354_RS08280 17c8c97cc72ca842e52006e6611652a4 351 SUPERFAMILY SSF52540 117 293 1.24E-40 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS08280 17c8c97cc72ca842e52006e6611652a4 351 Pfam PF02562 PhoH-like protein 118 321 1.1E-94 T 29-03-2018 IPR003714 PhoH-like protein GO:0005524 AM354_RS21915 13ff699eb282b63f5c295192c6ef2783 555 Pfam PF17287 POTRA domain 149 201 9.3E-22 T 29-03-2018 IPR035251 ShlB, POTRA domain AM354_RS21915 13ff699eb282b63f5c295192c6ef2783 555 Gene3D G3DSA:3.10.20.310 76 148 7.1E-14 T 29-03-2018 AM354_RS21915 13ff699eb282b63f5c295192c6ef2783 555 Pfam PF08479 POTRA domain, ShlB-type 74 148 1.0E-21 T 29-03-2018 IPR013686 Polypeptide-transport-associated, ShlB-type AM354_RS21915 13ff699eb282b63f5c295192c6ef2783 555 PIRSF PIRSF029745 8 555 6.5E-139 T 29-03-2018 IPR027282 Two partner secretion pathway transporter GO:0015031 AM354_RS21915 13ff699eb282b63f5c295192c6ef2783 555 Gene3D G3DSA:2.40.160.50 174 554 6.5E-50 T 29-03-2018 AM354_RS21915 13ff699eb282b63f5c295192c6ef2783 555 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 207 516 6.3E-90 T 29-03-2018 IPR005565 Haemolysin activator HlyB, C-terminal AM354_RS14685 b9a78c942c0fab6f9d0ef4cdd7daac37 367 SUPERFAMILY SSF53335 6 365 5.01E-52 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS14685 b9a78c942c0fab6f9d0ef4cdd7daac37 367 TIGRFAM TIGR02143 trmA_only: tRNA (uracil(54)-C(5))-methyltransferase 11 365 4.0E-186 T 29-03-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 AM354_RS14685 b9a78c942c0fab6f9d0ef4cdd7daac37 367 Gene3D G3DSA:3.40.50.150 160 366 1.9E-35 T 29-03-2018 AM354_RS14685 b9a78c942c0fab6f9d0ef4cdd7daac37 367 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 299 328 - T 29-03-2018 IPR030390 RNA methyltransferase TrmA, active site AM354_RS14685 b9a78c942c0fab6f9d0ef4cdd7daac37 367 Hamap MF_01011 tRNA/tmRNA (uracil-C(5))-methyltransferase [trmA]. 4 366 42.405 T 29-03-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 AM354_RS14685 b9a78c942c0fab6f9d0ef4cdd7daac37 367 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 11 365 6.3E-191 T 29-03-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 AM354_RS14685 b9a78c942c0fab6f9d0ef4cdd7daac37 367 Gene3D G3DSA:3.40.50.150 27 159 0.25 T 29-03-2018 AM354_RS14685 b9a78c942c0fab6f9d0ef4cdd7daac37 367 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 348 358 - T 29-03-2018 IPR030391 RNA methyltransferase TrmA, conserved site AM354_RS07130 604f613e9131f4dab5caca339072376a 232 SMART SM00382 26 211 1.7E-9 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS07130 604f613e9131f4dab5caca339072376a 232 SUPERFAMILY SSF52540 2 220 1.5E-58 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS07130 604f613e9131f4dab5caca339072376a 232 Pfam PF00005 ABC transporter 17 161 6.1E-31 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS07130 604f613e9131f4dab5caca339072376a 232 TIGRFAM TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE 2 232 2.9E-106 T 29-03-2018 IPR017780 ABC transporter, urea, ATP-binding protein, UrtE AM354_RS07130 604f613e9131f4dab5caca339072376a 232 Gene3D G3DSA:3.40.50.300 1 226 2.5E-55 T 29-03-2018 AM354_RS05475 377ff4882a80d599065e7852e92cb1a9 56 Gene3D G3DSA:1.10.10.620 3 54 4.1E-25 T 29-03-2018 AM354_RS05475 377ff4882a80d599065e7852e92cb1a9 56 Pfam PF04957 Ribosome modulation factor 1 53 2.0E-30 T 29-03-2018 IPR007040 Ribosome modulation factor AM354_RS05475 377ff4882a80d599065e7852e92cb1a9 56 ProDom PD051650 RIBOSOME MODULATION FACTOR E FACTOR-RELATED DIMERIZATION BIOGENESIS RIBOSOMES INVOLVED 70S 1 56 2.0E-20 T 29-03-2018 IPR007040 Ribosome modulation factor AM354_RS05475 377ff4882a80d599065e7852e92cb1a9 56 Hamap MF_00919 Ribosome modulation factor [rmf]. 1 56 30.087 T 29-03-2018 IPR007040 Ribosome modulation factor AM354_RS19625 6c60507c4ba8d97605a42b4e5c2b52f6 172 ProSitePatterns PS00201 Flavodoxin signature. 5 21 - T 29-03-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 AM354_RS19625 6c60507c4ba8d97605a42b4e5c2b52f6 172 PIRSF PIRSF038996 1 170 3.5E-53 T 29-03-2018 IPR010086 Flavodoxin, long chain GO:0010181 AM354_RS19625 6c60507c4ba8d97605a42b4e5c2b52f6 172 Gene3D G3DSA:3.40.50.360 1 73 2.1E-14 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS19625 6c60507c4ba8d97605a42b4e5c2b52f6 172 Gene3D G3DSA:3.40.50.360 74 172 5.1E-16 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS19625 6c60507c4ba8d97605a42b4e5c2b52f6 172 Pfam PF00258 Flavodoxin 5 160 1.0E-26 T 29-03-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 AM354_RS19625 6c60507c4ba8d97605a42b4e5c2b52f6 172 SUPERFAMILY SSF52218 1 166 2.48E-46 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS19625 6c60507c4ba8d97605a42b4e5c2b52f6 172 TIGRFAM TIGR01752 flav_long: flavodoxin 2 168 1.5E-70 T 29-03-2018 IPR010086 Flavodoxin, long chain GO:0010181 AM354_RS02810 03ca1f1ff957778027bde8474f8617b7 510 Pfam PF06097 Bacterial protein of unknown function (DUF945) 1 479 3.7E-138 T 29-03-2018 IPR010352 Protein of unknown function DUF945 AM354_RS04710 bdc9e4cfca42bdc7722e2b542cc8b80e 159 Gene3D G3DSA:1.10.10.10 2 148 3.0E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS04710 bdc9e4cfca42bdc7722e2b542cc8b80e 159 SUPERFAMILY SSF46785 1 135 1.09E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS04710 bdc9e4cfca42bdc7722e2b542cc8b80e 159 Pfam PF02082 Transcriptional regulator 5 83 2.1E-15 T 29-03-2018 IPR000944 Transcription regulator Rrf2-type AM354_RS05255 3b415a1c9f894bb480e348a23e211bfc 437 Gene3D G3DSA:1.20.1250.20 233 436 1.7E-18 T 29-03-2018 AM354_RS05255 3b415a1c9f894bb480e348a23e211bfc 437 SUPERFAMILY SSF103473 14 432 5.36E-72 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS05255 3b415a1c9f894bb480e348a23e211bfc 437 Gene3D G3DSA:1.20.1250.20 10 220 5.1E-33 T 29-03-2018 AM354_RS05255 3b415a1c9f894bb480e348a23e211bfc 437 Pfam PF07690 Major Facilitator Superfamily 27 387 3.5E-37 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS08065 1f8e8657b1d6904ce6539776225def63 243 Pfam PF06149 Protein of unknown function (DUF969) 7 224 1.3E-90 T 29-03-2018 IPR010374 Protein of unknown function DUF969 AM354_RS06590 5dce0f2a163f7a38d9f1db03f40d7fdb 526 Gene3D G3DSA:3.50.50.60 24 484 2.1E-18 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS06590 5dce0f2a163f7a38d9f1db03f40d7fdb 526 Hamap MF_00212 Probable malate:quinone oxidoreductase [mqo]. 25 516 54.284 T 29-03-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 AM354_RS06590 5dce0f2a163f7a38d9f1db03f40d7fdb 526 TIGRFAM TIGR01320 mal_quin_oxido: malate dehydrogenase (acceptor) 29 514 4.0E-214 T 29-03-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 AM354_RS06590 5dce0f2a163f7a38d9f1db03f40d7fdb 526 SUPERFAMILY SSF51905 11 355 2.37E-24 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS06590 5dce0f2a163f7a38d9f1db03f40d7fdb 526 Pfam PF06039 Malate:quinone oxidoreductase (Mqo) 28 516 2.8E-242 T 29-03-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 AM354_RS25350 b18d5d942e008f1a0a725177e51363f7 366 Pfam PF02119 Flagellar P-ring protein 22 365 1.8E-136 T 29-03-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AM354_RS25350 b18d5d942e008f1a0a725177e51363f7 366 Hamap MF_00416 Flagellar P-ring protein [flgI]. 5 366 38.374 T 29-03-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AM354_RS25350 b18d5d942e008f1a0a725177e51363f7 366 PRINTS PR01010 Flagellar P-ring protein signature 22 37 8.2E-90 T 29-03-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AM354_RS25350 b18d5d942e008f1a0a725177e51363f7 366 PRINTS PR01010 Flagellar P-ring protein signature 188 206 8.2E-90 T 29-03-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AM354_RS25350 b18d5d942e008f1a0a725177e51363f7 366 PRINTS PR01010 Flagellar P-ring protein signature 162 180 8.2E-90 T 29-03-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AM354_RS25350 b18d5d942e008f1a0a725177e51363f7 366 PRINTS PR01010 Flagellar P-ring protein signature 105 122 8.2E-90 T 29-03-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AM354_RS25350 b18d5d942e008f1a0a725177e51363f7 366 PRINTS PR01010 Flagellar P-ring protein signature 252 264 8.2E-90 T 29-03-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AM354_RS25350 b18d5d942e008f1a0a725177e51363f7 366 PRINTS PR01010 Flagellar P-ring protein signature 37 52 8.2E-90 T 29-03-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AM354_RS25350 b18d5d942e008f1a0a725177e51363f7 366 PRINTS PR01010 Flagellar P-ring protein signature 57 72 8.2E-90 T 29-03-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AM354_RS25350 b18d5d942e008f1a0a725177e51363f7 366 PRINTS PR01010 Flagellar P-ring protein signature 83 102 8.2E-90 T 29-03-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AM354_RS25350 b18d5d942e008f1a0a725177e51363f7 366 PRINTS PR01010 Flagellar P-ring protein signature 122 140 8.2E-90 T 29-03-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AM354_RS08900 b38dcbb6bfa6a8f93d82fe75f21aeb0c 172 Pfam PF01292 Prokaryotic cytochrome b561 7 172 1.6E-16 T 29-03-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 AM354_RS08900 b38dcbb6bfa6a8f93d82fe75f21aeb0c 172 SUPERFAMILY SSF81342 5 172 1.65E-21 T 29-03-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 AM354_RS08900 b38dcbb6bfa6a8f93d82fe75f21aeb0c 172 Gene3D G3DSA:1.20.950.20 1 172 8.2E-22 T 29-03-2018 AM354_RS15710 3b9b3f4f06111d2708e2fdc6f030f893 366 SUPERFAMILY SSF56796 4 356 4.45E-117 T 29-03-2018 AM354_RS15710 3b9b3f4f06111d2708e2fdc6f030f893 366 Pfam PF01761 3-dehydroquinate synthase 67 325 1.1E-109 T 29-03-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 AM354_RS15710 3b9b3f4f06111d2708e2fdc6f030f893 366 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 13 349 5.1E-120 T 29-03-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 AM354_RS15710 3b9b3f4f06111d2708e2fdc6f030f893 366 Gene3D G3DSA:3.40.50.1970 4 172 3.5E-49 T 29-03-2018 AM354_RS15710 3b9b3f4f06111d2708e2fdc6f030f893 366 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 2 358 42.925 T 29-03-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 AM354_RS15710 3b9b3f4f06111d2708e2fdc6f030f893 366 PIRSF PIRSF001455 10 357 6.9E-105 T 29-03-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 AM354_RS15710 3b9b3f4f06111d2708e2fdc6f030f893 366 Gene3D G3DSA:1.20.1090.10 173 361 6.7E-67 T 29-03-2018 AM354_RS26100 2342e502b2743ff1e2d7590f66c7b903 252 Hamap MF_00795 Copper homeostasis protein CutC [cutC]. 2 243 39.21 T 29-03-2018 IPR005627 Copper homeostasis protein CutC GO:0005507|GO:0055070 Reactome: R-HSA-936837 AM354_RS26100 2342e502b2743ff1e2d7590f66c7b903 252 SUPERFAMILY SSF110395 2 243 2.09E-77 T 29-03-2018 IPR023648 Copper homeostasis CutC domain GO:0005507|GO:0055070 Reactome: R-HSA-936837 AM354_RS26100 2342e502b2743ff1e2d7590f66c7b903 252 Gene3D G3DSA:3.20.20.380 1 249 1.3E-88 T 29-03-2018 AM354_RS26100 2342e502b2743ff1e2d7590f66c7b903 252 Pfam PF03932 CutC family 3 199 6.1E-72 T 29-03-2018 IPR023648 Copper homeostasis CutC domain GO:0005507|GO:0055070 Reactome: R-HSA-936837 AM354_RS00160 b507f2f7686300f88b31e30d61556348 89 Hamap MF_00262 Cell division topological specificity factor [minE]. 3 86 18.66 T 29-03-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 AM354_RS00160 b507f2f7686300f88b31e30d61556348 89 Pfam PF03776 Septum formation topological specificity factor MinE 14 82 7.3E-24 T 29-03-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 AM354_RS00160 b507f2f7686300f88b31e30d61556348 89 SUPERFAMILY SSF55229 32 84 3.79E-17 T 29-03-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 AM354_RS00160 b507f2f7686300f88b31e30d61556348 89 Gene3D G3DSA:3.30.1070.10 1 83 1.3E-27 T 29-03-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 AM354_RS00160 b507f2f7686300f88b31e30d61556348 89 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 1 83 1.8E-33 T 29-03-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 AM354_RS13630 edb8aa0a7bf056b220b886429b7cf87e 86 Pfam PF01402 Ribbon-helix-helix protein, copG family 6 43 2.3E-11 T 29-03-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 AM354_RS13630 edb8aa0a7bf056b220b886429b7cf87e 86 Gene3D G3DSA:1.10.1220.10 1 49 1.5E-8 T 29-03-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AM354_RS13630 edb8aa0a7bf056b220b886429b7cf87e 86 SUPERFAMILY SSF47598 3 45 4.3E-10 T 29-03-2018 IPR010985 Ribbon-helix-helix GO:0006355 AM354_RS18930 9ab037c9ef1eeb1ac051c5759ec5dc00 184 SUPERFAMILY SSF54292 7 89 9.57E-17 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM354_RS18930 9ab037c9ef1eeb1ac051c5759ec5dc00 184 Pfam PF01799 [2Fe-2S] binding domain 84 168 1.0E-22 T 29-03-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AM354_RS18930 9ab037c9ef1eeb1ac051c5759ec5dc00 184 Gene3D G3DSA:1.10.150.120 86 183 3.9E-23 T 29-03-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AM354_RS18930 9ab037c9ef1eeb1ac051c5759ec5dc00 184 SUPERFAMILY SSF47741 101 173 3.66E-22 T 29-03-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AM354_RS18930 9ab037c9ef1eeb1ac051c5759ec5dc00 184 Gene3D G3DSA:3.10.20.30 3 85 2.4E-19 T 29-03-2018 IPR012675 Beta-grasp domain AM354_RS24610 1aec56b3ddb12817bb568df794a5bad9 71 SUPERFAMILY SSF109747 15 64 2.75E-8 T 29-03-2018 IPR015065 Surface composition regulator AM354_RS24610 1aec56b3ddb12817bb568df794a5bad9 71 Hamap MF_00525 Surface composition regulator [glgS]. 6 64 18.312 T 29-03-2018 IPR015065 Surface composition regulator AM354_RS24610 1aec56b3ddb12817bb568df794a5bad9 71 Pfam PF08971 Glycogen synthesis protein 6 69 7.3E-26 T 29-03-2018 IPR015065 Surface composition regulator AM354_RS24610 1aec56b3ddb12817bb568df794a5bad9 71 ProDom PD054490 GLYCOGEN GLGS SYNTHESIS BIOSYNTHESIS DEPENDENT BIOSYNTHESIS RPOS 3D-STRUCTURE 14 59 0.004 T 29-03-2018 IPR015065 Surface composition regulator AM354_RS24610 1aec56b3ddb12817bb568df794a5bad9 71 Gene3D G3DSA:1.20.970.20 14 63 2.8E-20 T 29-03-2018 AM354_RS16890 4cfa8f6d8b7555c0f37e0ac67077c7a2 90 PRINTS PR00107 Phosphocarrier protein signature 55 72 6.3E-10 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like AM354_RS16890 4cfa8f6d8b7555c0f37e0ac67077c7a2 90 PRINTS PR00107 Phosphocarrier protein signature 40 55 6.3E-10 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like AM354_RS16890 4cfa8f6d8b7555c0f37e0ac67077c7a2 90 PRINTS PR00107 Phosphocarrier protein signature 14 30 6.3E-10 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like AM354_RS16890 4cfa8f6d8b7555c0f37e0ac67077c7a2 90 SUPERFAMILY SSF55594 4 90 2.09E-24 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like AM354_RS16890 4cfa8f6d8b7555c0f37e0ac67077c7a2 90 Gene3D G3DSA:3.30.1340.10 1 89 1.7E-23 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like AM354_RS16890 4cfa8f6d8b7555c0f37e0ac67077c7a2 90 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 4 84 2.6E-22 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like AM354_RS16890 4cfa8f6d8b7555c0f37e0ac67077c7a2 90 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 14 21 - T 29-03-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site AM354_RS16890 4cfa8f6d8b7555c0f37e0ac67077c7a2 90 Pfam PF00381 PTS HPr component phosphorylation site 4 84 1.7E-23 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like AM354_RS14220 a625558a3cdd841c20b11d233596b114 145 Gene3D G3DSA:3.50.80.10 1 145 1.4E-53 T 29-03-2018 IPR023509 D-Tyr tRNAtyr deacylase-like domain AM354_RS14220 a625558a3cdd841c20b11d233596b114 145 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 145 34.607 T 29-03-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 AM354_RS14220 a625558a3cdd841c20b11d233596b114 145 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 3 143 2.1E-52 T 29-03-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 AM354_RS14220 a625558a3cdd841c20b11d233596b114 145 SUPERFAMILY SSF69500 1 144 7.19E-56 T 29-03-2018 IPR023509 D-Tyr tRNAtyr deacylase-like domain AM354_RS14220 a625558a3cdd841c20b11d233596b114 145 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 1 145 2.6E-68 T 29-03-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 AM354_RS08595 f1208da0e5014c9af0196370816f20d8 383 Pfam PF02353 Mycolic acid cyclopropane synthetase 108 368 2.0E-101 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS08595 f1208da0e5014c9af0196370816f20d8 383 SUPERFAMILY SSF53335 117 370 1.02E-77 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS08595 f1208da0e5014c9af0196370816f20d8 383 PIRSF PIRSF003085 4 378 1.0E-125 T 29-03-2018 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 AM354_RS08595 f1208da0e5014c9af0196370816f20d8 383 Gene3D G3DSA:3.40.50.150 105 372 7.3E-66 T 29-03-2018 AM354_RS04230 2276767c4a75ba9e7560de2ee00b6599 362 Gene3D G3DSA:1.10.1530.10 5 77 7.1E-23 T 29-03-2018 AM354_RS04230 2276767c4a75ba9e7560de2ee00b6599 362 SUPERFAMILY SSF89733 6 347 4.05E-100 T 29-03-2018 IPR003767 Malate/L-lactate dehydrogenase-like GO:0008152|GO:0016491|GO:0055114 AM354_RS04230 2276767c4a75ba9e7560de2ee00b6599 362 Gene3D G3DSA:1.20.5.460 282 309 6.6E-16 T 29-03-2018 AM354_RS04230 2276767c4a75ba9e7560de2ee00b6599 362 Pfam PF02615 Malate/L-lactate dehydrogenase 10 338 7.4E-110 T 29-03-2018 IPR003767 Malate/L-lactate dehydrogenase-like GO:0008152|GO:0016491|GO:0055114 AM354_RS04230 2276767c4a75ba9e7560de2ee00b6599 362 Gene3D G3DSA:3.30.1370.60 78 280 9.5E-74 T 29-03-2018 AM354_RS00785 06d9d287687b49269d1fd8f82d7dd9fe 142 Gene3D G3DSA:3.10.129.10 1 134 1.2E-34 T 29-03-2018 AM354_RS00785 06d9d287687b49269d1fd8f82d7dd9fe 142 Pfam PF03061 Thioesterase superfamily 26 98 8.5E-19 T 29-03-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AM354_RS00785 06d9d287687b49269d1fd8f82d7dd9fe 142 SUPERFAMILY SSF54637 7 131 3.2E-39 T 29-03-2018 IPR029069 HotDog domain AM354_RS03440 50f5b0ec791f8a2183a40e5fe3bde9e2 445 Pfam PF00034 Cytochrome c 30 129 9.5E-6 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS03440 50f5b0ec791f8a2183a40e5fe3bde9e2 445 SUPERFAMILY SSF46626 18 153 1.01E-21 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS03440 50f5b0ec791f8a2183a40e5fe3bde9e2 445 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 316 400 7.1E-11 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS03440 50f5b0ec791f8a2183a40e5fe3bde9e2 445 Gene3D G3DSA:1.10.760.10 160 306 6.4E-18 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS03440 50f5b0ec791f8a2183a40e5fe3bde9e2 445 SUPERFAMILY SSF46626 178 295 8.93E-17 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS03440 50f5b0ec791f8a2183a40e5fe3bde9e2 445 SUPERFAMILY SSF46626 318 421 1.72E-24 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS03440 50f5b0ec791f8a2183a40e5fe3bde9e2 445 Gene3D G3DSA:1.10.760.10 307 432 1.4E-22 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS03440 50f5b0ec791f8a2183a40e5fe3bde9e2 445 Gene3D G3DSA:1.10.760.10 12 143 5.6E-17 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS03440 50f5b0ec791f8a2183a40e5fe3bde9e2 445 PRINTS PR00605 Class IC cytochrome C signature 378 400 2.3E-5 T 29-03-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 AM354_RS03440 50f5b0ec791f8a2183a40e5fe3bde9e2 445 PRINTS PR00605 Class IC cytochrome C signature 325 336 2.3E-5 T 29-03-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 AM354_RS03440 50f5b0ec791f8a2183a40e5fe3bde9e2 445 PIRSF PIRSF000018 1 440 5.9E-173 T 29-03-2018 IPR014353 Membrane-bound alcohol dehydrogenase, cytochrome c subunit GO:0005506|GO:0016020|GO:0016614|GO:0020037 AM354_RS12930 62b0d31279232217b8f625ad6e329f0d 251 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 25 250 3.4E-86 T 29-03-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 AM354_RS12930 62b0d31279232217b8f625ad6e329f0d 251 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 158 172 - T 29-03-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 AM354_RS12930 62b0d31279232217b8f625ad6e329f0d 251 Pfam PF01209 ubiE/COQ5 methyltransferase family 20 250 5.3E-106 T 29-03-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 AM354_RS12930 62b0d31279232217b8f625ad6e329f0d 251 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 16 250 39.339 T 29-03-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 AM354_RS12930 62b0d31279232217b8f625ad6e329f0d 251 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 36 51 - T 29-03-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 AM354_RS12930 62b0d31279232217b8f625ad6e329f0d 251 Gene3D G3DSA:3.40.50.150 2 250 1.9E-45 T 29-03-2018 AM354_RS12930 62b0d31279232217b8f625ad6e329f0d 251 SUPERFAMILY SSF53335 19 248 4.34E-52 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS14360 639bc3e99448caa947525f24cb8fbb70 366 Gene3D G3DSA:3.40.50.2000 189 348 1.3E-30 T 29-03-2018 AM354_RS14360 639bc3e99448caa947525f24cb8fbb70 366 SUPERFAMILY SSF53756 2 363 1.08E-58 T 29-03-2018 AM354_RS14360 639bc3e99448caa947525f24cb8fbb70 366 Pfam PF13439 Glycosyltransferase Family 4 13 184 3.1E-17 T 29-03-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193 AM354_RS14360 639bc3e99448caa947525f24cb8fbb70 366 Pfam PF00534 Glycosyl transferases group 1 198 341 1.1E-25 T 29-03-2018 IPR001296 Glycosyl transferase, family 1 AM354_RS14360 639bc3e99448caa947525f24cb8fbb70 366 Gene3D G3DSA:3.40.50.2000 1 188 6.3E-11 T 29-03-2018 AM354_RS17995 f4f6eedeebad2f7e4d730179765d9833 201 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 58 86 - T 29-03-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 AM354_RS17995 f4f6eedeebad2f7e4d730179765d9833 201 Pfam PF01464 Transglycosylase SLT domain 40 164 2.4E-27 T 29-03-2018 IPR008258 Transglycosylase SLT domain 1 AM354_RS17995 f4f6eedeebad2f7e4d730179765d9833 201 SUPERFAMILY SSF53955 27 158 1.55E-28 T 29-03-2018 IPR023346 Lysozyme-like domain AM354_RS17995 f4f6eedeebad2f7e4d730179765d9833 201 Gene3D G3DSA:1.10.530.10 26 201 8.0E-32 T 29-03-2018 AM354_RS15355 46361fc21f257b62162b6b6cd5e20573 278 Gene3D G3DSA:3.40.50.10490 111 278 5.9E-30 T 29-03-2018 AM354_RS15355 46361fc21f257b62162b6b6cd5e20573 278 SUPERFAMILY SSF46689 11 85 1.09E-18 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS15355 46361fc21f257b62162b6b6cd5e20573 278 Gene3D G3DSA:1.10.10.10 5 88 4.5E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS15355 46361fc21f257b62162b6b6cd5e20573 278 Pfam PF01380 SIS domain 142 268 1.0E-25 T 29-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AM354_RS15355 46361fc21f257b62162b6b6cd5e20573 278 Pfam PF01418 Helix-turn-helix domain, rpiR family 11 80 1.7E-12 T 29-03-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 AM354_RS15355 46361fc21f257b62162b6b6cd5e20573 278 SUPERFAMILY SSF53697 117 270 4.85E-28 T 29-03-2018 AM354_RS15640 fbd9e5901e8142083fb84e699b269c44 87 Gene3D G3DSA:1.10.1220.10 1 73 1.5E-10 T 29-03-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AM354_RS15640 fbd9e5901e8142083fb84e699b269c44 87 SUPERFAMILY SSF47598 2 70 5.34E-19 T 29-03-2018 IPR010985 Ribbon-helix-helix GO:0006355 AM354_RS00790 0c143c3609b3c145e651799f1fec2dd4 179 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 1 176 19.429 T 29-03-2018 IPR006008 Intracellular septation protein A GO:0016021 AM354_RS00790 0c143c3609b3c145e651799f1fec2dd4 179 TIGRFAM TIGR00997 ispZ: intracellular septation protein A 1 178 1.3E-70 T 29-03-2018 IPR006008 Intracellular septation protein A GO:0016021 AM354_RS00790 0c143c3609b3c145e651799f1fec2dd4 179 Pfam PF04279 Intracellular septation protein A 1 175 9.1E-71 T 29-03-2018 IPR006008 Intracellular septation protein A GO:0016021 AM354_RS13150 a8cf4127cbb22d0e7c8834b75beab9e4 549 SUPERFAMILY SSF51905 10 323 8.43E-46 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS13150 a8cf4127cbb22d0e7c8834b75beab9e4 549 Pfam PF01266 FAD dependent oxidoreductase 11 360 3.6E-53 T 29-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AM354_RS13150 a8cf4127cbb22d0e7c8834b75beab9e4 549 TIGRFAM TIGR03377 glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit 11 539 9.2E-265 T 29-03-2018 IPR017752 Glycerol-3-phosphate dehydrogenase, GlpA subunit GO:0004368|GO:0005886|GO:0010181|GO:0046174|GO:0050660|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 AM354_RS13150 a8cf4127cbb22d0e7c8834b75beab9e4 549 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 10 22 7.2E-22 T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM354_RS13150 a8cf4127cbb22d0e7c8834b75beab9e4 549 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 39 51 7.2E-22 T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM354_RS13150 a8cf4127cbb22d0e7c8834b75beab9e4 549 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 348 360 7.2E-22 T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM354_RS13150 a8cf4127cbb22d0e7c8834b75beab9e4 549 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 23 33 7.2E-22 T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM354_RS13150 a8cf4127cbb22d0e7c8834b75beab9e4 549 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 312 318 7.2E-22 T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM354_RS13150 a8cf4127cbb22d0e7c8834b75beab9e4 549 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 353 363 - T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM354_RS13150 a8cf4127cbb22d0e7c8834b75beab9e4 549 Pfam PF04324 BFD-like [2Fe-2S] binding domain 433 484 5.4E-9 T 29-03-2018 IPR007419 BFD-like [2Fe-2S]-binding domain AM354_RS13150 a8cf4127cbb22d0e7c8834b75beab9e4 549 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 15 32 - T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM354_RS13150 a8cf4127cbb22d0e7c8834b75beab9e4 549 Gene3D G3DSA:3.50.50.60 5 394 1.6E-54 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS12560 51adf46a2334825eae02397b79bd4f99 410 Gene3D G3DSA:2.130.10.10 26 151 2.2E-9 T 29-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AM354_RS12560 51adf46a2334825eae02397b79bd4f99 410 Gene3D G3DSA:2.130.10.10 290 409 1.1E-14 T 29-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AM354_RS12560 51adf46a2334825eae02397b79bd4f99 410 Gene3D G3DSA:2.130.10.10 171 284 1.5E-8 T 29-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AM354_RS12560 51adf46a2334825eae02397b79bd4f99 410 SUPERFAMILY SSF50969 166 391 2.98E-25 T 29-03-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like AM354_RS12560 51adf46a2334825eae02397b79bd4f99 410 SUPERFAMILY SSF50969 71 134 2.98E-25 T 29-03-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like AM354_RS05805 87b08e8712565b1437cafa054e4856ce 552 SUPERFAMILY SSF52540 1 348 2.15E-17 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS05805 87b08e8712565b1437cafa054e4856ce 552 Pfam PF11398 Protein of unknown function (DUF2813) 1 375 1.7E-157 T 29-03-2018 IPR022602 Protein of unknown function DUF2813 AM354_RS05805 87b08e8712565b1437cafa054e4856ce 552 Gene3D G3DSA:3.40.50.300 1 351 1.6E-16 T 29-03-2018 AM354_RS17035 ea3a681c6a8d845e42475c2eeb77c76d 1486 SUPERFAMILY SSF51395 433 1188 1.42E-249 T 29-03-2018 AM354_RS17035 ea3a681c6a8d845e42475c2eeb77c76d 1486 SUPERFAMILY SSF56235 12 428 1.67E-150 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AM354_RS17035 ea3a681c6a8d845e42475c2eeb77c76d 1486 Pfam PF01493 GXGXG motif 1236 1419 9.9E-76 T 29-03-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 AM354_RS17035 ea3a681c6a8d845e42475c2eeb77c76d 1486 SUPERFAMILY SSF69336 1211 1465 1.96E-89 T 29-03-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 AM354_RS17035 ea3a681c6a8d845e42475c2eeb77c76d 1486 Gene3D G3DSA:3.20.20.70 437 778 3.0E-82 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS17035 ea3a681c6a8d845e42475c2eeb77c76d 1486 Pfam PF01645 Conserved region in glutamate synthase 792 1155 3.8E-156 T 29-03-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 AM354_RS17035 ea3a681c6a8d845e42475c2eeb77c76d 1486 Pfam PF04898 Glutamate synthase central domain 456 736 7.4E-105 T 29-03-2018 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 AM354_RS17035 ea3a681c6a8d845e42475c2eeb77c76d 1486 Gene3D G3DSA:2.160.20.60 1211 1485 5.0E-99 T 29-03-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 AM354_RS17035 ea3a681c6a8d845e42475c2eeb77c76d 1486 Gene3D G3DSA:3.60.20.10 12 436 1.0E-145 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AM354_RS17035 ea3a681c6a8d845e42475c2eeb77c76d 1486 Gene3D G3DSA:3.20.20.70 779 1207 4.5E-145 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS17035 ea3a681c6a8d845e42475c2eeb77c76d 1486 Pfam PF00310 Glutamine amidotransferases class-II 12 424 6.3E-176 T 29-03-2018 IPR017932 Glutamine amidotransferase type 2 domain AM354_RS03065 fd46635a6b38e6f2d5c9472988e84f4b 79 Pfam PF06945 Protein of unknown function (DUF1289) 12 57 1.0E-18 T 29-03-2018 IPR010710 Protein of unknown function DUF1289 AM354_RS10130 2e6c8f09f7bb4d7f9b8189a4da68a88c 188 Gene3D G3DSA:1.10.150.240 18 75 1.5E-15 T 29-03-2018 IPR023198 Phosphoglycolate phosphatase, domain 2 AM354_RS10130 2e6c8f09f7bb4d7f9b8189a4da68a88c 188 Gene3D G3DSA:3.40.50.1000 76 188 5.2E-23 T 29-03-2018 IPR023214 HAD-like domain AM354_RS10130 2e6c8f09f7bb4d7f9b8189a4da68a88c 188 TIGRFAM TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase 5 185 1.8E-60 T 29-03-2018 IPR010976 Beta-phosphoglucomutase hydrolase AM354_RS10130 2e6c8f09f7bb4d7f9b8189a4da68a88c 188 SUPERFAMILY SSF56784 4 186 6.54E-48 T 29-03-2018 IPR023214 HAD-like domain AM354_RS10130 2e6c8f09f7bb4d7f9b8189a4da68a88c 188 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 183 4.2E-29 T 29-03-2018 IPR023214 HAD-like domain AM354_RS10130 2e6c8f09f7bb4d7f9b8189a4da68a88c 188 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 122 183 5.4E-15 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS20075 c4a72e1a327b59613dddcdb18500484e 144 Gene3D G3DSA:3.90.1010.10 1 143 2.7E-43 T 29-03-2018 AM354_RS20075 c4a72e1a327b59613dddcdb18500484e 144 SUPERFAMILY SSF82649 3 142 8.89E-43 T 29-03-2018 AM354_RS20075 c4a72e1a327b59613dddcdb18500484e 144 Pfam PF02657 Fe-S metabolism associated domain 18 138 3.0E-38 T 29-03-2018 IPR003808 Fe-S metabolism associated domain, SufE-like AM354_RS20075 c4a72e1a327b59613dddcdb18500484e 144 TIGRFAM TIGR03391 FeS_syn_CsdE: cysteine desulfurase, sulfur acceptor subunit CsdE 3 140 5.0E-70 T 29-03-2018 IPR017763 Cysteine desulfurase, sulphur acceptor subunit CsdE AM354_RS20230 5e2a15e42e11b99215e9e73486cc38ff 165 Pfam PF07977 FabA-like domain 31 155 8.1E-41 T 29-03-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AM354_RS20230 5e2a15e42e11b99215e9e73486cc38ff 165 SUPERFAMILY SSF54637 17 163 9.31E-51 T 29-03-2018 IPR029069 HotDog domain AM354_RS20230 5e2a15e42e11b99215e9e73486cc38ff 165 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 22 160 4.7E-61 T 29-03-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AM354_RS20230 5e2a15e42e11b99215e9e73486cc38ff 165 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 22 163 37.83 T 29-03-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AM354_RS20230 5e2a15e42e11b99215e9e73486cc38ff 165 Gene3D G3DSA:3.10.129.10 12 163 4.2E-57 T 29-03-2018 AM354_RS09120 dbb4906286d8185335718ab5f22a96b3 205 TIGRFAM TIGR02842 CyoC: cytochrome o ubiquinol oxidase, subunit III 25 204 6.3E-85 T 29-03-2018 IPR014206 Cytochrome o ubiquinol oxidase, subunit III GO:0005886|GO:0008827|GO:0019646 AM354_RS09120 dbb4906286d8185335718ab5f22a96b3 205 SUPERFAMILY SSF81452 12 202 6.28E-59 T 29-03-2018 IPR000298 Cytochrome c oxidase-like subunit III GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM354_RS09120 dbb4906286d8185335718ab5f22a96b3 205 Pfam PF00510 Cytochrome c oxidase subunit III 17 202 1.2E-16 T 29-03-2018 IPR000298 Cytochrome c oxidase-like subunit III GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM354_RS09120 dbb4906286d8185335718ab5f22a96b3 205 Gene3D G3DSA:1.20.120.80 19 204 7.8E-52 T 29-03-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM354_RS08060 c679f7b61b879794a8f5cf963f641f22 339 Pfam PF06166 Protein of unknown function (DUF979) 6 338 1.4E-130 T 29-03-2018 IPR009323 Protein of unknown function DUF979 AM354_RS04770 988017a42796a309503cc5747303325a 434 PRINTS PR00447 Natural resistance-associated macrophage protein signature 139 158 4.9E-35 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 AM354_RS04770 988017a42796a309503cc5747303325a 434 PRINTS PR00447 Natural resistance-associated macrophage protein signature 214 237 4.9E-35 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 AM354_RS04770 988017a42796a309503cc5747303325a 434 PRINTS PR00447 Natural resistance-associated macrophage protein signature 111 137 4.9E-35 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 AM354_RS04770 988017a42796a309503cc5747303325a 434 PRINTS PR00447 Natural resistance-associated macrophage protein signature 316 335 4.9E-35 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 AM354_RS04770 988017a42796a309503cc5747303325a 434 PRINTS PR00447 Natural resistance-associated macrophage protein signature 164 185 4.9E-35 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 AM354_RS04770 988017a42796a309503cc5747303325a 434 Pfam PF01566 Natural resistance-associated macrophage protein 52 400 7.5E-124 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 AM354_RS04770 988017a42796a309503cc5747303325a 434 TIGRFAM TIGR01197 nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 34 394 3.8E-98 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 AM354_RS04770 988017a42796a309503cc5747303325a 434 Hamap MF_00221 Divalent metal cation transporter MntH [mntH]. 21 426 35.712 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 AM354_RS06045 a12f88e9931775b6fa79b19f1e9bac84 462 Gene3D G3DSA:3.10.50.40 327 440 1.7E-12 T 29-03-2018 AM354_RS06045 a12f88e9931775b6fa79b19f1e9bac84 462 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 355 436 2.0E-6 T 29-03-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain AM354_RS06045 a12f88e9931775b6fa79b19f1e9bac84 462 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 234 345 3.1E-14 T 29-03-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 AM354_RS06045 a12f88e9931775b6fa79b19f1e9bac84 462 Gene3D G3DSA:1.10.287.460 225 326 9.0E-16 T 29-03-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 AM354_RS06045 a12f88e9931775b6fa79b19f1e9bac84 462 SUPERFAMILY SSF54534 243 437 1.18E-17 T 29-03-2018 AM354_RS16750 20c171e7fe4e5ba8b5f53e22c87fff14 91 Pfam PF12773 Double zinc ribbon 41 87 1.9E-10 T 29-03-2018 IPR025874 Double zinc ribbon AM354_RS16750 20c171e7fe4e5ba8b5f53e22c87fff14 91 Gene3D G3DSA:2.20.28.20 37 65 5.6E-4 T 29-03-2018 AM354_RS16750 20c171e7fe4e5ba8b5f53e22c87fff14 91 Gene3D G3DSA:2.20.28.20 66 88 0.12 T 29-03-2018 AM354_RS00145 98136b06dbd1f579cd917adeee1a3b5d 196 TIGRFAM TIGR00752 slp: outer membrane lipoprotein, Slp family 17 192 1.8E-63 T 29-03-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 AM354_RS00145 98136b06dbd1f579cd917adeee1a3b5d 196 Pfam PF03843 Outer membrane lipoprotein Slp family 22 169 6.2E-47 T 29-03-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 AM354_RS00145 98136b06dbd1f579cd917adeee1a3b5d 196 PIRSF PIRSF004982 7 192 4.5E-50 T 29-03-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 AM354_RS00445 8ae58bdff0010677b063a29c5a3f1e9d 214 Pfam PF01914 MarC family integral membrane protein 10 210 2.5E-73 T 29-03-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 AM354_RS00445 8ae58bdff0010677b063a29c5a3f1e9d 214 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 8 206 1.2E-78 T 29-03-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 AM354_RS12545 7aa5f1b4e308085173164b243ebc6e49 68 Gene3D G3DSA:3.90.820.10 4 63 3.3E-23 T 29-03-2018 AM354_RS12545 7aa5f1b4e308085173164b243ebc6e49 68 SUPERFAMILY SSF160582 4 64 4.84E-20 T 29-03-2018 AM354_RS12545 7aa5f1b4e308085173164b243ebc6e49 68 Pfam PF03621 MbtH-like protein 5 55 8.9E-19 T 29-03-2018 IPR005153 MbtH-like protein AM354_RS12545 7aa5f1b4e308085173164b243ebc6e49 68 SMART SM00923 5 55 3.5E-17 T 29-03-2018 IPR005153 MbtH-like protein AM354_RS16615 4b76ddd065dffa387db78bc71d8336b8 231 Gene3D G3DSA:3.40.50.880 1 231 1.4E-31 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS16615 4b76ddd065dffa387db78bc71d8336b8 231 Pfam PF00117 Glutamine amidotransferase class-I 30 196 2.8E-13 T 29-03-2018 IPR017926 Glutamine amidotransferase AM354_RS16615 4b76ddd065dffa387db78bc71d8336b8 231 SUPERFAMILY SSF52317 3 228 3.06E-41 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS14475 486dcb29c2bbb8c356ec830345af8d4f 157 TIGRFAM TIGR00185 tRNA_yibK_trmL: tRNA (cytidine(34)-2'-O)-methyltransferase 1 152 1.2E-72 T 29-03-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 AM354_RS14475 486dcb29c2bbb8c356ec830345af8d4f 157 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 2 151 34.349 T 29-03-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 AM354_RS14475 486dcb29c2bbb8c356ec830345af8d4f 157 Gene3D G3DSA:3.40.1280.10 1 156 2.9E-37 T 29-03-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AM354_RS14475 486dcb29c2bbb8c356ec830345af8d4f 157 SUPERFAMILY SSF75217 1 152 3.99E-45 T 29-03-2018 IPR029028 Alpha/beta knot methyltransferases AM354_RS14475 486dcb29c2bbb8c356ec830345af8d4f 157 Pfam PF00588 SpoU rRNA Methylase family 2 142 9.5E-34 T 29-03-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AM354_RS14475 486dcb29c2bbb8c356ec830345af8d4f 157 PIRSF PIRSF029256 1 154 6.3E-71 T 29-03-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 AM354_RS08735 2a71b051afc965bce856fd2dc491a80a 245 SUPERFAMILY SSF140959 2 243 1.2E-63 T 29-03-2018 AM354_RS08735 2a71b051afc965bce856fd2dc491a80a 245 Pfam PF03301 Tryptophan 2,3-dioxygenase 187 243 9.8E-17 T 29-03-2018 IPR004981 Tryptophan 2,3-dioxygenase GO:0004833|GO:0019441|GO:0020037 KEGG: 00380+1.13.11.11|Reactome: R-HSA-71240 AM354_RS08735 2a71b051afc965bce856fd2dc491a80a 245 Pfam PF03301 Tryptophan 2,3-dioxygenase 1 139 3.7E-31 T 29-03-2018 IPR004981 Tryptophan 2,3-dioxygenase GO:0004833|GO:0019441|GO:0020037 KEGG: 00380+1.13.11.11|Reactome: R-HSA-71240 AM354_RS06270 ca0298542f793aa6f52fef1f827c16ca 474 Gene3D G3DSA:2.60.120.10 343 458 2.6E-26 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS06270 ca0298542f793aa6f52fef1f827c16ca 474 SUPERFAMILY SSF53448 4 286 4.98E-71 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS06270 ca0298542f793aa6f52fef1f827c16ca 474 SUPERFAMILY SSF51182 189 473 1.56E-78 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS06270 ca0298542f793aa6f52fef1f827c16ca 474 Pfam PF00483 Nucleotidyl transferase 6 289 2.2E-69 T 29-03-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AM354_RS06270 ca0298542f793aa6f52fef1f827c16ca 474 Gene3D G3DSA:3.90.550.10 4 342 3.1E-93 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS06270 ca0298542f793aa6f52fef1f827c16ca 474 TIGRFAM TIGR01479 GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 4 473 1.6E-216 T 29-03-2018 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase GO:0000271|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 AM354_RS06270 ca0298542f793aa6f52fef1f827c16ca 474 Pfam PF01050 Mannose-6-phosphate isomerase 319 469 1.8E-66 T 29-03-2018 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 AM354_RS22150 af27e11d67174138322557fb818b4cd5 533 Pfam PF13402 Peptidase M60, enhancin and enhancin-like 352 514 1.3E-13 T 29-03-2018 IPR031161 Peptidase family M60 domain AM354_RS22150 af27e11d67174138322557fb818b4cd5 533 SUPERFAMILY SSF51055 5 64 2.75E-6 T 29-03-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 AM354_RS22150 af27e11d67174138322557fb818b4cd5 533 SMART SM01276 155 453 0.0013 T 29-03-2018 IPR031161 Peptidase family M60 domain AM354_RS22150 af27e11d67174138322557fb818b4cd5 533 Gene3D G3DSA:2.10.10.20 1 65 2.2E-7 T 29-03-2018 AM354_RS16880 a398abed787ef1ee89aa4cc5729b54f6 140 Pfam PF01381 Helix-turn-helix 83 134 1.7E-7 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM354_RS16880 a398abed787ef1ee89aa4cc5729b54f6 140 Gene3D G3DSA:1.10.260.40 79 137 1.2E-9 T 29-03-2018 AM354_RS16880 a398abed787ef1ee89aa4cc5729b54f6 140 SMART SM00530 81 135 2.3E-7 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM354_RS16880 a398abed787ef1ee89aa4cc5729b54f6 140 SUPERFAMILY SSF47413 80 137 2.1E-7 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS03630 24fe45d6db4be35a6068ca8b9cf62ca9 199 Gene3D G3DSA:3.90.70.10 47 199 1.7E-10 T 29-03-2018 AM354_RS11875 c5ca2a332973de9dbee8bca863f41879 146 Gene3D G3DSA:2.30.110.10 2 145 1.9E-13 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 AM354_RS11875 c5ca2a332973de9dbee8bca863f41879 146 Hamap MF_00764 UPF0306 protein YhbP [yhbP]. 6 143 33.808 T 29-03-2018 IPR011194 Uncharacterised protein family UPF0306 AM354_RS11875 c5ca2a332973de9dbee8bca863f41879 146 SUPERFAMILY SSF50475 4 142 6.38E-19 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 AM354_RS11875 c5ca2a332973de9dbee8bca863f41879 146 PIRSF PIRSF009554 3 145 2.7E-60 T 29-03-2018 IPR011194 Uncharacterised protein family UPF0306 AM354_RS04735 93648cb11907308b2848c03620a47407 288 Gene3D G3DSA:3.90.1200.10 58 284 6.2E-26 T 29-03-2018 AM354_RS04735 93648cb11907308b2848c03620a47407 288 Hamap MF_01604 Thiamine kinase [thiK]. 3 281 42.76 T 29-03-2018 IPR014093 Thiamine kinase GO:0006772|GO:0016310|GO:0019165 KEGG: 00730+2.7.1.89|MetaCyc: PWY-6896 AM354_RS04735 93648cb11907308b2848c03620a47407 288 SUPERFAMILY SSF56112 8 282 4.81E-39 T 29-03-2018 IPR011009 Protein kinase-like domain AM354_RS04735 93648cb11907308b2848c03620a47407 288 Pfam PF01636 Phosphotransferase enzyme family 41 235 3.8E-14 T 29-03-2018 IPR002575 Aminoglycoside phosphotransferase AM354_RS15050 e9724948fcf1ed72d9fabd8c4c217346 630 Pfam PF10145 Phage-related minor tail protein 177 287 1.9E-10 T 29-03-2018 IPR010090 Phage tail tape measure protein AM354_RS10865 771733107c550f1ceb75c6a6a8fde07c 87 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 86 2.8E-31 T 29-03-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS10865 771733107c550f1ceb75c6a6a8fde07c 87 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 17.714 T 29-03-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS10865 771733107c550f1ceb75c6a6a8fde07c 87 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 13 87 3.0E-24 T 29-03-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS10865 771733107c550f1ceb75c6a6a8fde07c 87 Gene3D G3DSA:1.20.58.110 1 87 1.2E-29 T 29-03-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS10865 771733107c550f1ceb75c6a6a8fde07c 87 SUPERFAMILY SSF46992 3 86 2.22E-31 T 29-03-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS10865 771733107c550f1ceb75c6a6a8fde07c 87 Pfam PF01649 Ribosomal protein S20 2 84 1.3E-28 T 29-03-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS23545 794a10b16e0d9107fa2910b7067802f0 341 SUPERFAMILY SSF161098 135 321 3.4E-17 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS23545 794a10b16e0d9107fa2910b7067802f0 341 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 158 338 4.2E-26 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS23545 794a10b16e0d9107fa2910b7067802f0 341 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 7 46 7.0E-7 T 29-03-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AM354_RS23545 794a10b16e0d9107fa2910b7067802f0 341 Gene3D G3DSA:1.10.3720.10 10 328 2.5E-39 T 29-03-2018 AM354_RS23200 38d3158918f939d80aabdb0808324513 169 Pfam PF06496 Protein of unknown function (DUF1097) 8 141 2.0E-36 T 29-03-2018 IPR009476 Protein of unknown function DUF1097 AM354_RS04900 9a058157eef1cc3f698eac360056a43e 371 Gene3D G3DSA:3.30.9.10 214 313 2.8E-9 T 29-03-2018 AM354_RS04900 9a058157eef1cc3f698eac360056a43e 371 Gene3D G3DSA:3.30.9.10 59 213 2.8E-25 T 29-03-2018 AM354_RS04900 9a058157eef1cc3f698eac360056a43e 371 Pfam PF01266 FAD dependent oxidoreductase 4 350 1.7E-45 T 29-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AM354_RS04900 9a058157eef1cc3f698eac360056a43e 371 SUPERFAMILY SSF51905 313 370 1.29E-43 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS04900 9a058157eef1cc3f698eac360056a43e 371 SUPERFAMILY SSF51905 2 216 1.29E-43 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS04900 9a058157eef1cc3f698eac360056a43e 371 SUPERFAMILY SSF54373 214 313 8.24E-20 T 29-03-2018 AM354_RS04900 9a058157eef1cc3f698eac360056a43e 371 Hamap MF_00515 N-methyl-L-tryptophan oxidase [solA]. 1 371 76.956 T 29-03-2018 IPR023493 N-methyl-L-tryptophan oxidase MTOX GO:0050131|GO:0050660|GO:0055114 AM354_RS16770 459ddc7bda8fdbd61992bd28c9e5e994 311 Hamap MF_01544 p-hydroxybenzoic acid efflux pump subunit AaeA [aaeA]. 1 311 55.743 T 29-03-2018 IPR022871 Para-hydroxybenzoic acid efflux pump, subunit AaeA AM354_RS16770 459ddc7bda8fdbd61992bd28c9e5e994 311 Gene3D G3DSA:2.40.50.100 170 243 0.056 T 29-03-2018 AM354_RS16770 459ddc7bda8fdbd61992bd28c9e5e994 311 Pfam PF13437 HlyD family secretion protein 156 241 2.4E-9 T 29-03-2018 AM354_RS16770 459ddc7bda8fdbd61992bd28c9e5e994 311 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 46 241 1.3E-32 T 29-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AM354_RS16770 459ddc7bda8fdbd61992bd28c9e5e994 311 Gene3D G3DSA:2.40.50.100 49 169 2.9E-16 T 29-03-2018 AM354_RS16770 459ddc7bda8fdbd61992bd28c9e5e994 311 SUPERFAMILY SSF111369 46 243 1.16E-22 T 29-03-2018 AM354_RS16770 459ddc7bda8fdbd61992bd28c9e5e994 311 Pfam PF13533 Biotin-lipoyl like 47 95 1.5E-16 T 29-03-2018 AM354_RS25660 04aa7f38316a76dc054450f5564c1066 320 Pfam PF01370 NAD dependent epimerase/dehydratase family 7 216 3.8E-30 T 29-03-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AM354_RS25660 04aa7f38316a76dc054450f5564c1066 320 SUPERFAMILY SSF51735 1 265 1.07E-51 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS25660 04aa7f38316a76dc054450f5564c1066 320 Gene3D G3DSA:3.40.50.720 1 316 1.3E-43 T 29-03-2018 AM354_RS06930 272f73211f4eacf42f7dcf6f96336c2e 732 SMART SM00491 545 677 1.3E-34 T 29-03-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 AM354_RS06930 272f73211f4eacf42f7dcf6f96336c2e 732 SMART SM00488 18 294 0.0066 T 29-03-2018 IPR006554 Helicase-like, DEXD box c2 type GO:0004003|GO:0016818 AM354_RS06930 272f73211f4eacf42f7dcf6f96336c2e 732 SUPERFAMILY SSF52540 199 270 4.81E-16 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS06930 272f73211f4eacf42f7dcf6f96336c2e 732 SUPERFAMILY SSF52540 49 97 4.81E-16 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS06930 272f73211f4eacf42f7dcf6f96336c2e 732 SUPERFAMILY SSF52540 452 670 4.81E-16 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS06930 272f73211f4eacf42f7dcf6f96336c2e 732 Gene3D G3DSA:3.40.50.300 25 486 4.5E-25 T 29-03-2018 AM354_RS06930 272f73211f4eacf42f7dcf6f96336c2e 732 Gene3D G3DSA:3.40.50.300 504 671 1.4E-4 T 29-03-2018 AM354_RS06930 272f73211f4eacf42f7dcf6f96336c2e 732 SMART SM00487 23 307 0.0027 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AM354_RS06930 272f73211f4eacf42f7dcf6f96336c2e 732 Pfam PF13307 Helicase C-terminal domain 534 688 3.2E-25 T 29-03-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 AM354_RS06930 272f73211f4eacf42f7dcf6f96336c2e 732 Pfam PF06733 DEAD_2 197 263 1.5E-7 T 29-03-2018 IPR010614 DEAD2 GO:0003677|GO:0004003|GO:0005524 AM354_RS02295 c38073e8c1cd67bb651dc37bad8510c6 338 Gene3D G3DSA:3.40.50.720 145 327 3.4E-31 T 29-03-2018 AM354_RS02295 c38073e8c1cd67bb651dc37bad8510c6 338 Gene3D G3DSA:3.90.180.10 1 144 4.2E-41 T 29-03-2018 AM354_RS02295 c38073e8c1cd67bb651dc37bad8510c6 338 Pfam PF00107 Zinc-binding dehydrogenase 172 298 1.1E-27 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AM354_RS02295 c38073e8c1cd67bb651dc37bad8510c6 338 SUPERFAMILY SSF51735 135 302 1.05E-38 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS02295 c38073e8c1cd67bb651dc37bad8510c6 338 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 131 2.2E-27 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AM354_RS02295 c38073e8c1cd67bb651dc37bad8510c6 338 SUPERFAMILY SSF50129 1 169 5.63E-45 T 29-03-2018 IPR011032 GroES-like AM354_RS02295 c38073e8c1cd67bb651dc37bad8510c6 338 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 57 71 - T 29-03-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AM354_RS02295 c38073e8c1cd67bb651dc37bad8510c6 338 SMART SM00829 7 332 5.3E-6 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AM354_RS19710 50764733c26d978a721b9945019c1403 589 ProSitePatterns PS00211 ABC transporters family signature. 483 497 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS19710 50764733c26d978a721b9945019c1403 589 SMART SM00382 371 557 1.4E-14 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS19710 50764733c26d978a721b9945019c1403 589 Pfam PF00664 ABC transporter transmembrane region 27 300 5.6E-35 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM354_RS19710 50764733c26d978a721b9945019c1403 589 SUPERFAMILY SSF52540 336 582 6.04E-92 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS19710 50764733c26d978a721b9945019c1403 589 Pfam PF00005 ABC transporter 362 511 4.7E-34 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS19710 50764733c26d978a721b9945019c1403 589 Gene3D G3DSA:3.40.50.300 335 587 2.4E-77 T 29-03-2018 AM354_RS19710 50764733c26d978a721b9945019c1403 589 Gene3D G3DSA:1.20.1560.10 2 334 1.1E-58 T 29-03-2018 AM354_RS19710 50764733c26d978a721b9945019c1403 589 SUPERFAMILY SSF90123 5 334 3.27E-59 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM354_RS02325 a21a8ce310d3b913e7e5071395c3fd44 164 Pfam PF03350 Uncharacterized protein family, UPF0114 9 125 7.7E-35 T 29-03-2018 IPR005134 Uncharacterised protein family UPF0114 AM354_RS02325 a21a8ce310d3b913e7e5071395c3fd44 164 Hamap MF_00143 UPF0114 protein YqhA [yqhA]. 1 164 90.477 T 29-03-2018 IPR020761 Uncharacterised protein family UPF0114, bacteria AM354_RS02325 a21a8ce310d3b913e7e5071395c3fd44 164 TIGRFAM TIGR00645 HI0507: TIGR00645 family protein 2 164 2.6E-78 T 29-03-2018 IPR020761 Uncharacterised protein family UPF0114, bacteria AM354_RS23720 16f220a5e97fd74abec1897cc34e6fde 472 SUPERFAMILY SSF55931 134 469 2.09E-101 T 29-03-2018 AM354_RS23720 16f220a5e97fd74abec1897cc34e6fde 472 Gene3D G3DSA:3.10.20.70 31 129 1.9E-14 T 29-03-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AM354_RS23720 16f220a5e97fd74abec1897cc34e6fde 472 Gene3D G3DSA:3.30.590.10 130 472 9.5E-94 T 29-03-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 AM354_RS23720 16f220a5e97fd74abec1897cc34e6fde 472 Pfam PF00120 Glutamine synthetase, catalytic domain 134 467 1.4E-103 T 29-03-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AM354_RS23720 16f220a5e97fd74abec1897cc34e6fde 472 SUPERFAMILY SSF54368 26 132 7.59E-9 T 29-03-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AM354_RS23720 16f220a5e97fd74abec1897cc34e6fde 472 SMART SM01230 133 390 3.1E-98 T 29-03-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AM354_RS23720 16f220a5e97fd74abec1897cc34e6fde 472 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 271 286 - T 29-03-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 AM354_RS05640 4462dd344e3c254fe823db1d70d7131f 69 Pfam PF00313 'Cold-shock' DNA-binding domain 5 68 1.2E-30 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM354_RS05640 4462dd344e3c254fe823db1d70d7131f 69 SMART SM00357 5 69 1.9E-28 T 29-03-2018 IPR011129 Cold shock domain GO:0003676 AM354_RS05640 4462dd344e3c254fe823db1d70d7131f 69 SUPERFAMILY SSF50249 4 68 7.93E-25 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS05640 4462dd344e3c254fe823db1d70d7131f 69 PIRSF PIRSF002599 1 69 8.8E-25 T 29-03-2018 IPR012156 Cold shock, CspA GO:0003676 AM354_RS05640 4462dd344e3c254fe823db1d70d7131f 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 17 36 - T 29-03-2018 IPR019844 Cold-shock conserved site AM354_RS05640 4462dd344e3c254fe823db1d70d7131f 69 Gene3D G3DSA:2.40.50.140 3 69 1.8E-27 T 29-03-2018 AM354_RS05640 4462dd344e3c254fe823db1d70d7131f 69 PRINTS PR00050 Cold shock protein signature 6 21 7.0E-16 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM354_RS05640 4462dd344e3c254fe823db1d70d7131f 69 PRINTS PR00050 Cold shock protein signature 42 60 7.0E-16 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM354_RS05640 4462dd344e3c254fe823db1d70d7131f 69 PRINTS PR00050 Cold shock protein signature 27 36 7.0E-16 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM354_RS12085 03e980e25f7da1e48215fea8f234e1b2 144 Pfam PF13518 Helix-turn-helix domain 20 70 4.4E-10 T 29-03-2018 AM354_RS12085 03e980e25f7da1e48215fea8f234e1b2 144 Pfam PF13518 Helix-turn-helix domain 75 126 6.2E-7 T 29-03-2018 AM354_RS12085 03e980e25f7da1e48215fea8f234e1b2 144 SUPERFAMILY SSF48295 65 126 1.31E-16 T 29-03-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AM354_RS12085 03e980e25f7da1e48215fea8f234e1b2 144 Gene3D G3DSA:1.10.10.10 67 134 1.8E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS12085 03e980e25f7da1e48215fea8f234e1b2 144 Gene3D G3DSA:1.10.10.10 2 66 5.2E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS12085 03e980e25f7da1e48215fea8f234e1b2 144 SUPERFAMILY SSF48295 4 67 5.18E-13 T 29-03-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AM354_RS17240 6d18e03399d048b703d3f71278c9fbbf 238 Pfam PF04982 HPP family 58 177 1.5E-39 T 29-03-2018 IPR007065 HPP AM354_RS02595 c59335ad9d3a85b7597f12f7ab1a39bd 248 Pfam PF01925 Sulfite exporter TauE/SafE 13 241 8.1E-27 T 29-03-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 AM354_RS06385 7d2a727ee670d6ed46e9019b4a87713e 209 SUPERFAMILY SSF48317 4 149 1.31E-12 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM354_RS06385 7d2a727ee670d6ed46e9019b4a87713e 209 Gene3D G3DSA:1.20.144.10 69 156 6.1E-10 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM354_RS06385 7d2a727ee670d6ed46e9019b4a87713e 209 SMART SM00014 17 144 6.8E-4 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM354_RS06385 7d2a727ee670d6ed46e9019b4a87713e 209 Pfam PF01569 PAP2 superfamily 69 150 1.4E-10 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM354_RS11170 17b4e7849f55534631d7e30ba39e9bfd 399 Pfam PF07690 Major Facilitator Superfamily 20 337 1.6E-31 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS11170 17b4e7849f55534631d7e30ba39e9bfd 399 Gene3D G3DSA:1.20.1250.20 10 199 2.0E-21 T 29-03-2018 AM354_RS11170 17b4e7849f55534631d7e30ba39e9bfd 399 SUPERFAMILY SSF103473 9 386 2.09E-51 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS11170 17b4e7849f55534631d7e30ba39e9bfd 399 Gene3D G3DSA:1.20.1250.20 200 396 3.3E-16 T 29-03-2018 AM354_RS16895 fdb1c4bb9654cb1cfc1e012fd5346fcf 284 SUPERFAMILY SSF52540 2 151 2.81E-12 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS16895 fdb1c4bb9654cb1cfc1e012fd5346fcf 284 PIRSF PIRSF005052 1 284 3.2E-114 T 29-03-2018 IPR005337 RapZ-like family GO:0005524 AM354_RS16895 fdb1c4bb9654cb1cfc1e012fd5346fcf 284 Pfam PF03668 P-loop ATPase protein family 1 282 1.3E-144 T 29-03-2018 IPR005337 RapZ-like family GO:0005524 AM354_RS16895 fdb1c4bb9654cb1cfc1e012fd5346fcf 284 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 1 281 40.972 T 29-03-2018 IPR005337 RapZ-like family GO:0005524 AM354_RS16895 fdb1c4bb9654cb1cfc1e012fd5346fcf 284 Gene3D G3DSA:3.40.50.300 1 152 8.1E-11 T 29-03-2018 AM354_RS23510 f003e3d1c94e60793648b88a1e897634 335 Hamap MF_00730 Nucleoid-associated protein YejK [yejK]. 3 330 45.555 T 29-03-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 AM354_RS23510 f003e3d1c94e60793648b88a1e897634 335 Pfam PF04245 37-kD nucleoid-associated bacterial protein 10 324 1.7E-95 T 29-03-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 AM354_RS07800 0a0f5f15993a413441675358f7c3a271 341 Pfam PF01032 FecCD transport family 23 337 4.3E-88 T 29-03-2018 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 AM354_RS07800 0a0f5f15993a413441675358f7c3a271 341 SUPERFAMILY SSF81345 9 337 1.44E-75 T 29-03-2018 IPR029022 ABC transporter, BtuC-like AM354_RS07800 0a0f5f15993a413441675358f7c3a271 341 Gene3D G3DSA:1.10.3470.10 6 341 6.0E-68 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS02395 2503d823600ac5a0fc2b84bf1039e226 131 Pfam PF04248 Domain of unknown function (DUF427) 31 122 1.2E-32 T 29-03-2018 IPR007361 Domain of unknown function DUF427 AM354_RS22155 89f8def67adac1ae6d33e41173cecbd4 191 SUPERFAMILY SSF55811 10 188 1.08E-50 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 AM354_RS22155 89f8def67adac1ae6d33e41173cecbd4 191 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 9 186 1.4E-60 T 29-03-2018 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 AM354_RS22155 89f8def67adac1ae6d33e41173cecbd4 191 Pfam PF00293 NUDIX domain 45 166 4.9E-11 T 29-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AM354_RS22155 89f8def67adac1ae6d33e41173cecbd4 191 Gene3D G3DSA:3.90.79.10 1 191 3.1E-37 T 29-03-2018 AM354_RS05935 b8ce9943cecdab03191248b31bd9df95 159 Pfam PF10722 Putative bacterial sensory transduction regulator 9 131 2.2E-15 T 29-03-2018 IPR019660 Putative sensory transduction regulator YbjN AM354_RS10780 a0faac6f32bba8189c24c8a22a44d434 156 Hamap MF_01191 UPF0442 protein YjjB [yjjB]. 1 156 35.906 T 29-03-2018 IPR020914 Uncharacterised protein family UPF0442 AM354_RS10780 a0faac6f32bba8189c24c8a22a44d434 156 Pfam PF12821 Threonine/Serine exporter, ThrE 13 146 6.2E-35 T 29-03-2018 IPR024528 Threonine/Serine exporter, ThrE AM354_RS14440 847172eafee3c5bc0911a14457a134cd 144 Pfam PF00581 Rhodanese-like domain 45 134 8.4E-14 T 29-03-2018 IPR001763 Rhodanese-like domain AM354_RS14440 847172eafee3c5bc0911a14457a134cd 144 Gene3D G3DSA:3.40.250.10 21 144 2.2E-22 T 29-03-2018 IPR001763 Rhodanese-like domain AM354_RS14440 847172eafee3c5bc0911a14457a134cd 144 SMART SM00450 41 139 1.3E-18 T 29-03-2018 IPR001763 Rhodanese-like domain AM354_RS14440 847172eafee3c5bc0911a14457a134cd 144 SUPERFAMILY SSF52821 16 143 5.63E-29 T 29-03-2018 IPR001763 Rhodanese-like domain AM354_RS18025 d49e84c08b4dccb673fdbab54bb2175c 325 TIGRFAM TIGR02797 exbB: tonB-system energizer ExbB 92 303 4.0E-96 T 29-03-2018 IPR014164 TonB-system energizer ExbB type-1 GO:0006810|GO:0016020 AM354_RS18025 d49e84c08b4dccb673fdbab54bb2175c 325 Pfam PF01618 MotA/TolQ/ExbB proton channel family 177 285 1.9E-34 T 29-03-2018 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 AM354_RS10640 23bcabf8bb8b7adbb294a729a59926c2 315 Gene3D G3DSA:3.40.190.10 114 199 2.9E-7 T 29-03-2018 AM354_RS10640 23bcabf8bb8b7adbb294a729a59926c2 315 Gene3D G3DSA:3.40.190.10 200 283 4.1E-9 T 29-03-2018 AM354_RS10640 23bcabf8bb8b7adbb294a729a59926c2 315 Pfam PF03466 LysR substrate binding domain 130 310 3.5E-17 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS10640 23bcabf8bb8b7adbb294a729a59926c2 315 SUPERFAMILY SSF53850 105 310 4.71E-35 T 29-03-2018 AM354_RS10640 23bcabf8bb8b7adbb294a729a59926c2 315 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 24 82 3.1E-17 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS10640 23bcabf8bb8b7adbb294a729a59926c2 315 SUPERFAMILY SSF46785 19 98 6.35E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS10640 23bcabf8bb8b7adbb294a729a59926c2 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 5.1E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS10640 23bcabf8bb8b7adbb294a729a59926c2 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 50 60 5.1E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS10640 23bcabf8bb8b7adbb294a729a59926c2 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 60 71 5.1E-8 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS10640 23bcabf8bb8b7adbb294a729a59926c2 315 Gene3D G3DSA:1.10.10.10 17 100 8.7E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS06110 d656a53d2d4ffb10de85b70bd105ab58 381 Gene3D G3DSA:3.90.1150.10 249 381 1.6E-56 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS06110 d656a53d2d4ffb10de85b70bd105ab58 381 SUPERFAMILY SSF53383 15 380 1.26E-114 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS06110 d656a53d2d4ffb10de85b70bd105ab58 381 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 5 379 1.3E-151 T 29-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AM354_RS06110 d656a53d2d4ffb10de85b70bd105ab58 381 PIRSF PIRSF001434 1 381 2.5E-147 T 29-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AM354_RS06110 d656a53d2d4ffb10de85b70bd105ab58 381 Gene3D G3DSA:3.40.640.10 2 247 5.7E-58 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS06110 d656a53d2d4ffb10de85b70bd105ab58 381 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 188 202 - T 29-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AM354_RS16965 b423b92f2e66669bb6e755fc1abf5f9a 100 SUPERFAMILY SSF52091 1 96 9.61E-16 T 29-03-2018 IPR002645 STAS domain AM354_RS16965 b423b92f2e66669bb6e755fc1abf5f9a 100 Gene3D G3DSA:3.30.750.24 3 98 1.3E-6 T 29-03-2018 IPR002645 STAS domain AM354_RS16965 b423b92f2e66669bb6e755fc1abf5f9a 100 Pfam PF13466 STAS domain 16 91 2.5E-17 T 29-03-2018 IPR002645 STAS domain AM354_RS10650 8dab145a7160ff4940f63790ce0bcb94 363 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 247 266 - T 29-03-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 AM354_RS10650 8dab145a7160ff4940f63790ce0bcb94 363 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 5 359 51.579 T 29-03-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 AM354_RS10650 8dab145a7160ff4940f63790ce0bcb94 363 Gene3D G3DSA:3.40.718.10 1 362 1.1E-131 T 29-03-2018 AM354_RS10650 8dab145a7160ff4940f63790ce0bcb94 363 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 6 354 1.9E-168 T 29-03-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 AM354_RS10650 8dab145a7160ff4940f63790ce0bcb94 363 SMART SM01329 6 355 4.5E-204 T 29-03-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 AM354_RS10650 8dab145a7160ff4940f63790ce0bcb94 363 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 6 355 4.3E-137 T 29-03-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 AM354_RS10650 8dab145a7160ff4940f63790ce0bcb94 363 SUPERFAMILY SSF53659 2 360 1.29E-123 T 29-03-2018 AM354_RS03570 657a3e4701da95675ed87abe5cf5cedd 236 Hamap MF_00749 RNA chaperone ProQ [proQ]. 3 236 30.654 T 29-03-2018 IPR023529 RNA chaperone ProQ GO:0003723|GO:0010608|GO:0033592|GO:0034057 AM354_RS03570 657a3e4701da95675ed87abe5cf5cedd 236 SUPERFAMILY SSF48657 5 119 3.01E-39 T 29-03-2018 IPR016103 ProQ/FinO domain AM354_RS03570 657a3e4701da95675ed87abe5cf5cedd 236 Gene3D G3DSA:1.10.1710.10 1 121 5.0E-41 T 29-03-2018 IPR016103 ProQ/FinO domain AM354_RS03570 657a3e4701da95675ed87abe5cf5cedd 236 Pfam PF04352 ProQ/FINO family 8 115 2.5E-43 T 29-03-2018 IPR016103 ProQ/FinO domain AM354_RS03570 657a3e4701da95675ed87abe5cf5cedd 236 SMART SM00945 5 119 3.8E-63 T 29-03-2018 IPR016103 ProQ/FinO domain AM354_RS03570 657a3e4701da95675ed87abe5cf5cedd 236 Pfam PF17516 ProQ C-terminal domain 186 236 7.8E-25 T 29-03-2018 IPR035236 RNA chaperone ProQ, C-terminal AM354_RS17950 8f37158bf18757a60ceae145bfad92ce 132 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 12 126 3.2E-5 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AM354_RS17950 8f37158bf18757a60ceae145bfad92ce 132 Gene3D G3DSA:3.10.180.10 5 131 1.2E-15 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS17950 8f37158bf18757a60ceae145bfad92ce 132 SUPERFAMILY SSF54593 12 131 8.03E-19 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS25220 0318577bcd303a20a7054825e74069ab 296 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 205 222 - T 29-03-2018 IPR000540 Flagellar motor protein MotA, conserved site AM354_RS25220 0318577bcd303a20a7054825e74069ab 296 TIGRFAM TIGR03818 MotA1: flagellar motor stator protein MotA 2 281 2.6E-118 T 29-03-2018 IPR022522 Flagellar motor stator, MotA AM354_RS25220 0318577bcd303a20a7054825e74069ab 296 Pfam PF01618 MotA/TolQ/ExbB proton channel family 138 239 2.3E-11 T 29-03-2018 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 AM354_RS18755 b061b1a3fd71fa72d3bca4931eb81ce8 310 Gene3D G3DSA:1.10.3530.10 31 207 2.2E-70 T 29-03-2018 IPR023136 Api92-like domain AM354_RS18755 b061b1a3fd71fa72d3bca4931eb81ce8 310 SUPERFAMILY SSF160940 3 278 9.15E-123 T 29-03-2018 AM354_RS18755 b061b1a3fd71fa72d3bca4931eb81ce8 310 Pfam PF06924 Protein of unknown function (DUF1281) 9 141 5.4E-54 T 29-03-2018 IPR009694 Protein of unknown function DUF1281 AM354_RS11330 08a874f9b2e7fbe35fe41ef057d53442 268 PRINTS PR00111 Alpha/beta hydrolase fold signature 103 116 6.2E-9 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS11330 08a874f9b2e7fbe35fe41ef057d53442 268 PRINTS PR00111 Alpha/beta hydrolase fold signature 206 220 6.2E-9 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS11330 08a874f9b2e7fbe35fe41ef057d53442 268 PRINTS PR00111 Alpha/beta hydrolase fold signature 54 69 6.2E-9 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS11330 08a874f9b2e7fbe35fe41ef057d53442 268 Pfam PF12146 Serine aminopeptidase, S33 25 251 8.8E-57 T 29-03-2018 IPR022742 Serine aminopeptidase, S33 AM354_RS11330 08a874f9b2e7fbe35fe41ef057d53442 268 Gene3D G3DSA:3.40.50.1820 1 268 1.0E-47 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS11330 08a874f9b2e7fbe35fe41ef057d53442 268 SUPERFAMILY SSF53474 193 265 8.77E-45 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS11330 08a874f9b2e7fbe35fe41ef057d53442 268 SUPERFAMILY SSF53474 7 135 8.77E-45 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS25025 d4c89007fa59c1592fa9a39838f8049e 628 PIRSF PIRSF028304 1 628 4.3E-184 T 29-03-2018 IPR010272 Type VI secretion system, TssF-like AM354_RS25025 d4c89007fa59c1592fa9a39838f8049e 628 TIGRFAM TIGR03359 VI_chp_6: type VI secretion protein, TIGR03359 family 5 628 6.0E-192 T 29-03-2018 IPR010272 Type VI secretion system, TssF-like AM354_RS25025 d4c89007fa59c1592fa9a39838f8049e 628 Pfam PF05947 Type VI secretion system, TssF 6 627 7.1E-225 T 29-03-2018 IPR010272 Type VI secretion system, TssF-like AM354_RS01155 1365a9fc2c621fe19701abe0aeddfe52 182 Pfam PF12306 Inclusion body protein 12 180 6.1E-50 T 29-03-2018 IPR021087 Uncharacterised protein family PixA/AidA AM354_RS03700 cab17f735b6212debfa2921818b5750b 267 TIGRFAM TIGR02017 hutG_amidohyd: N-formylglutamate deformylase 7 264 2.4E-115 T 29-03-2018 IPR010247 N-formylglutamate deformylase AM354_RS03700 cab17f735b6212debfa2921818b5750b 267 SUPERFAMILY SSF53187 4 261 4.39E-79 T 29-03-2018 AM354_RS03700 cab17f735b6212debfa2921818b5750b 267 Gene3D G3DSA:3.40.630.40 4 266 1.7E-76 T 29-03-2018 AM354_RS03700 cab17f735b6212debfa2921818b5750b 267 Pfam PF05013 N-formylglutamate amidohydrolase 15 232 1.1E-66 T 29-03-2018 IPR007709 N-formylglutamate amidohydrolase AM354_RS03725 9ea79cf2425bf2457f7e7cb450d74c25 293 Pfam PF03502 Nucleoside-specific channel-forming protein, Tsx 31 293 3.8E-82 T 29-03-2018 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 AM354_RS03725 9ea79cf2425bf2457f7e7cb450d74c25 293 SUPERFAMILY SSF111364 31 293 3.14E-87 T 29-03-2018 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 AM354_RS03725 9ea79cf2425bf2457f7e7cb450d74c25 293 Gene3D G3DSA:2.40.230.20 25 293 2.4E-74 T 29-03-2018 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 AM354_RS03725 9ea79cf2425bf2457f7e7cb450d74c25 293 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 150 175 3.7E-95 T 29-03-2018 IPR003055 Nucleoside-specific channel-forming protein, Tsx GO:0005337|GO:0009279 AM354_RS03725 9ea79cf2425bf2457f7e7cb450d74c25 293 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 27 49 3.7E-95 T 29-03-2018 IPR003055 Nucleoside-specific channel-forming protein, Tsx GO:0005337|GO:0009279 AM354_RS03725 9ea79cf2425bf2457f7e7cb450d74c25 293 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 54 78 3.7E-95 T 29-03-2018 IPR003055 Nucleoside-specific channel-forming protein, Tsx GO:0005337|GO:0009279 AM354_RS03725 9ea79cf2425bf2457f7e7cb450d74c25 293 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 89 110 3.7E-95 T 29-03-2018 IPR003055 Nucleoside-specific channel-forming protein, Tsx GO:0005337|GO:0009279 AM354_RS03725 9ea79cf2425bf2457f7e7cb450d74c25 293 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 241 260 3.7E-95 T 29-03-2018 IPR003055 Nucleoside-specific channel-forming protein, Tsx GO:0005337|GO:0009279 AM354_RS03725 9ea79cf2425bf2457f7e7cb450d74c25 293 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 115 135 3.7E-95 T 29-03-2018 IPR003055 Nucleoside-specific channel-forming protein, Tsx GO:0005337|GO:0009279 AM354_RS03725 9ea79cf2425bf2457f7e7cb450d74c25 293 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 182 205 3.7E-95 T 29-03-2018 IPR003055 Nucleoside-specific channel-forming protein, Tsx GO:0005337|GO:0009279 AM354_RS09195 ca315d671e8c1e2e4e3c5afbf43f6f35 330 Pfam PF00586 AIR synthase related protein, N-terminal domain 29 137 1.5E-22 T 29-03-2018 IPR016188 PurM-like, N-terminal domain AM354_RS09195 ca315d671e8c1e2e4e3c5afbf43f6f35 330 PIRSF PIRSF005303 1 322 1.1E-89 T 29-03-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 AM354_RS09195 ca315d671e8c1e2e4e3c5afbf43f6f35 330 Gene3D G3DSA:3.90.650.10 145 323 2.1E-46 T 29-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain AM354_RS09195 ca315d671e8c1e2e4e3c5afbf43f6f35 330 SUPERFAMILY SSF55326 4 138 6.98E-35 T 29-03-2018 IPR016188 PurM-like, N-terminal domain AM354_RS09195 ca315d671e8c1e2e4e3c5afbf43f6f35 330 Pfam PF02769 AIR synthase related protein, C-terminal domain 151 296 3.7E-9 T 29-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain AM354_RS09195 ca315d671e8c1e2e4e3c5afbf43f6f35 330 Gene3D G3DSA:3.30.1330.10 1 142 1.2E-35 T 29-03-2018 IPR016188 PurM-like, N-terminal domain AM354_RS09195 ca315d671e8c1e2e4e3c5afbf43f6f35 330 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 4 322 3.3E-115 T 29-03-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 AM354_RS09195 ca315d671e8c1e2e4e3c5afbf43f6f35 330 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 3 319 32.518 T 29-03-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 AM354_RS09195 ca315d671e8c1e2e4e3c5afbf43f6f35 330 SUPERFAMILY SSF56042 143 308 8.37E-40 T 29-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain AM354_RS09255 be71ecadfb847a381e86edbfc83e5807 200 PIRSF PIRSF000239 1 199 2.2E-57 T 29-03-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AM354_RS09255 be71ecadfb847a381e86edbfc83e5807 200 Gene3D G3DSA:3.30.1020.10 162 199 4.6E-14 T 29-03-2018 AM354_RS09255 be71ecadfb847a381e86edbfc83e5807 200 Pfam PF00578 AhpC/TSA family 5 139 5.3E-35 T 29-03-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AM354_RS09255 be71ecadfb847a381e86edbfc83e5807 200 SUPERFAMILY SSF52833 1 194 1.22E-64 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS09255 be71ecadfb847a381e86edbfc83e5807 200 Gene3D G3DSA:3.40.30.10 3 161 3.4E-39 T 29-03-2018 AM354_RS09255 be71ecadfb847a381e86edbfc83e5807 200 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 160 194 6.4E-11 T 29-03-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AM354_RS20935 14670cd6e19beac89d7037bd8742d6f1 162 SUPERFAMILY SSF55961 19 160 4.08E-35 T 29-03-2018 AM354_RS20935 14670cd6e19beac89d7037bd8742d6f1 162 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 28 153 2.9E-32 T 29-03-2018 IPR005031 Coenzyme Q-binding protein COQ10, START domain Reactome: R-HSA-611105 AM354_RS20935 14670cd6e19beac89d7037bd8742d6f1 162 Gene3D G3DSA:3.30.530.20 19 162 7.4E-33 T 29-03-2018 IPR023393 START-like domain AM354_RS13050 5bc7a80ec38eb7d3aa77f9a5599bfeaf 671 Gene3D G3DSA:1.25.40.10 87 256 2.5E-5 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS13050 5bc7a80ec38eb7d3aa77f9a5599bfeaf 671 Gene3D G3DSA:1.25.40.10 310 378 2.4E-4 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS13050 5bc7a80ec38eb7d3aa77f9a5599bfeaf 671 Gene3D G3DSA:1.25.20.10 452 657 3.7E-4 T 29-03-2018 AM354_RS23795 1287fb6ccb14b0bd2a9152423f154fe8 305 Pfam PF13407 Periplasmic binding protein domain 31 276 7.2E-53 T 29-03-2018 IPR025997 Periplasmic binding protein AM354_RS23795 1287fb6ccb14b0bd2a9152423f154fe8 305 SUPERFAMILY SSF53822 15 301 9.6E-72 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS23795 1287fb6ccb14b0bd2a9152423f154fe8 305 Gene3D G3DSA:3.40.50.2300 29 133 1.2E-18 T 29-03-2018 AM354_RS23795 1287fb6ccb14b0bd2a9152423f154fe8 305 Gene3D G3DSA:3.40.50.2300 134 304 1.5E-34 T 29-03-2018 AM354_RS05335 f3384b008321d25848fa6b1525502daf 356 Pfam PF00419 Fimbrial protein 197 355 1.5E-14 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS05335 f3384b008321d25848fa6b1525502daf 356 SUPERFAMILY SSF49401 204 356 6.46E-14 T 29-03-2018 IPR008966 Adhesion domain AM354_RS05335 f3384b008321d25848fa6b1525502daf 356 Gene3D G3DSA:2.60.40.1090 193 356 5.9E-17 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS25955 7fdbb9122591668143a5196e6272ff91 152 ProDom PD091196 MEMBRANE UPF0266 TRANSMEMBRANE INNER YOBD PLU2700 LMO0779 PM0830 YPO1755/Y2554/YP1637 LIN0773 21 144 2.0E-30 T 29-03-2018 IPR009328 Protein of unknown function DUF986 AM354_RS25955 7fdbb9122591668143a5196e6272ff91 152 PIRSF PIRSF020687 1 152 8.6E-65 T 29-03-2018 IPR009328 Protein of unknown function DUF986 AM354_RS25955 7fdbb9122591668143a5196e6272ff91 152 Hamap MF_01071 UPF0266 membrane protein YobD [yobD]. 1 152 30.98 T 29-03-2018 IPR009328 Protein of unknown function DUF986 AM354_RS25955 7fdbb9122591668143a5196e6272ff91 152 Pfam PF06173 Protein of unknown function (DUF986) 4 150 3.6E-62 T 29-03-2018 IPR009328 Protein of unknown function DUF986 AM354_RS07525 94d52c40d17e310201d670c88f614422 306 Pfam PF05661 Protein of unknown function (DUF808) 4 293 9.2E-118 T 29-03-2018 IPR008526 Inner membrane protein YedI AM354_RS07525 94d52c40d17e310201d670c88f614422 306 PIRSF PIRSF016660 1 305 4.6E-127 T 29-03-2018 IPR008526 Inner membrane protein YedI AM354_RS03270 e0514c4656de89fda3d28f96148e8522 161 PIRSF PIRSF000303 1 161 1.6E-56 T 29-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AM354_RS03270 e0514c4656de89fda3d28f96148e8522 161 PRINTS PR01011 Glutathione peroxidase family signature 124 133 1.1E-17 T 29-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AM354_RS03270 e0514c4656de89fda3d28f96148e8522 161 PRINTS PR01011 Glutathione peroxidase family signature 23 40 1.1E-17 T 29-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AM354_RS03270 e0514c4656de89fda3d28f96148e8522 161 PRINTS PR01011 Glutathione peroxidase family signature 58 74 1.1E-17 T 29-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AM354_RS03270 e0514c4656de89fda3d28f96148e8522 161 ProSitePatterns PS00763 Glutathione peroxidases signature 2. 61 68 - T 29-03-2018 IPR029760 Glutathione peroxidase conserved site Reactome: R-HSA-3299685 AM354_RS03270 e0514c4656de89fda3d28f96148e8522 161 Pfam PF00255 Glutathione peroxidase 9 112 5.2E-36 T 29-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AM354_RS03270 e0514c4656de89fda3d28f96148e8522 161 SUPERFAMILY SSF52833 6 161 4.25E-53 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS03270 e0514c4656de89fda3d28f96148e8522 161 Gene3D G3DSA:3.40.30.10 5 161 7.0E-38 T 29-03-2018 AM354_RS12655 a8f41de5f4a078880576b20d8c190623 196 Pfam PF04222 Protein of unknown function (DUF416) 5 193 2.7E-80 T 29-03-2018 IPR007338 Protein of unknown function DUF416 AM354_RS12655 a8f41de5f4a078880576b20d8c190623 196 Gene3D G3DSA:1.20.1590.10 5 194 5.4E-76 T 29-03-2018 IPR023381 YP001051499.1-like domain AM354_RS03390 032046f82ed15a94140c9fbbde56d4dd 327 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 39 327 5.2E-118 T 29-03-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 AM354_RS03390 032046f82ed15a94140c9fbbde56d4dd 327 SUPERFAMILY SSF55681 92 327 9.59E-82 T 29-03-2018 AM354_RS03390 032046f82ed15a94140c9fbbde56d4dd 327 Gene3D G3DSA:3.30.930.10 7 327 1.0E-88 T 29-03-2018 AM354_RS03390 032046f82ed15a94140c9fbbde56d4dd 327 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 8 326 49.515 T 29-03-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 AM354_RS03390 032046f82ed15a94140c9fbbde56d4dd 327 Pfam PF01409 tRNA synthetases class II core domain (F) 92 326 3.9E-107 T 29-03-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 AM354_RS03390 032046f82ed15a94140c9fbbde56d4dd 327 SUPERFAMILY SSF46589 14 99 7.85E-21 T 29-03-2018 IPR010978 tRNA-binding arm GO:0000166 AM354_RS03390 032046f82ed15a94140c9fbbde56d4dd 327 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 20 87 2.0E-25 T 29-03-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 AM354_RS11835 8898942bb6241c48300fb861d8776e65 286 Pfam PF06007 Phosphonate metabolism protein PhnJ 7 278 8.8E-148 T 29-03-2018 IPR010306 Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase GO:0016829|GO:0019700|GO:0051539 KEGG: 00440+4.7.1.1|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AM354_RS11835 8898942bb6241c48300fb861d8776e65 286 PIRSF PIRSF011468 1 286 1.7E-166 T 29-03-2018 IPR010306 Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase GO:0016829|GO:0019700|GO:0051539 KEGG: 00440+4.7.1.1|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AM354_RS10845 ff5a150061b543ee1bdb2bd26b4fa1d1 156 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 8 85 2.7E-12 T 29-03-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain AM354_RS10845 ff5a150061b543ee1bdb2bd26b4fa1d1 156 SUPERFAMILY SSF54534 7 143 2.36E-35 T 29-03-2018 AM354_RS10845 ff5a150061b543ee1bdb2bd26b4fa1d1 156 Gene3D G3DSA:3.10.50.40 2 155 3.7E-20 T 29-03-2018 AM354_RS24125 ec128c9b4560a42f8f8568077e478dca 291 PIRSF PIRSF037798 1 291 1.1E-154 T 29-03-2018 IPR017283 Protein deglycase HchA AM354_RS24125 ec128c9b4560a42f8f8568077e478dca 291 SUPERFAMILY SSF52317 8 286 2.19E-55 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS24125 ec128c9b4560a42f8f8568077e478dca 291 Pfam PF01965 DJ-1/PfpI family 78 201 8.5E-9 T 29-03-2018 IPR002818 DJ-1/PfpI AM354_RS24125 ec128c9b4560a42f8f8568077e478dca 291 Gene3D G3DSA:3.40.50.880 3 290 1.2E-56 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS14915 7a756f6087299ad70ba45c6eef967ec9 199 Gene3D G3DSA:3.40.50.10490 1 198 9.4E-40 T 29-03-2018 AM354_RS14915 7a756f6087299ad70ba45c6eef967ec9 199 SUPERFAMILY SSF53697 12 188 3.81E-34 T 29-03-2018 AM354_RS14915 7a756f6087299ad70ba45c6eef967ec9 199 Pfam PF01380 SIS domain 38 167 1.0E-21 T 29-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AM354_RS13470 afc3f52664f3a95ac9db9fab88e30ca2 300 Gene3D G3DSA:1.10.3720.10 20 287 3.2E-47 T 29-03-2018 AM354_RS13470 afc3f52664f3a95ac9db9fab88e30ca2 300 SUPERFAMILY SSF161098 93 280 1.96E-29 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS13470 afc3f52664f3a95ac9db9fab88e30ca2 300 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 299 3.2E-30 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS13470 afc3f52664f3a95ac9db9fab88e30ca2 300 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 17 69 1.0E-13 T 29-03-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AM354_RS18010 69a4ebdf0edf0d2a843d04f3cca9f652 305 Gene3D G3DSA:1.10.10.60 119 247 2.4E-14 T 29-03-2018 AM354_RS18010 69a4ebdf0edf0d2a843d04f3cca9f652 305 SUPERFAMILY SSF46689 245 293 6.72E-11 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS18010 69a4ebdf0edf0d2a843d04f3cca9f652 305 SMART SM00342 209 292 2.2E-27 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS18010 69a4ebdf0edf0d2a843d04f3cca9f652 305 Pfam PF12833 Helix-turn-helix domain 215 290 1.4E-21 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS18010 69a4ebdf0edf0d2a843d04f3cca9f652 305 Gene3D G3DSA:1.10.10.60 248 302 6.9E-13 T 29-03-2018 AM354_RS18010 69a4ebdf0edf0d2a843d04f3cca9f652 305 SUPERFAMILY SSF46689 192 243 2.21E-9 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS18010 69a4ebdf0edf0d2a843d04f3cca9f652 305 Pfam PF06719 AraC-type transcriptional regulator N-terminus 28 180 1.1E-42 T 29-03-2018 IPR009594 Transcription regulator HTH, AraC, N-terminal AM354_RS18280 8b84c314b73e56c99359aaf209a70fac 156 Pfam PF12101 Protein of unknown function (DUF3577) 10 138 1.4E-58 T 29-03-2018 IPR021960 Protein of unknown function DUF3577 AM354_RS10205 4beeade45888404fc38ab808c0a1d106 453 PIRSF PIRSF006351 1 448 1.5E-125 T 29-03-2018 IPR004796 Phosphotransferase system, cellobiose-type IIC component GO:0008982|GO:0009401|GO:0016021 AM354_RS10205 4beeade45888404fc38ab808c0a1d106 453 TIGRFAM TIGR00410 lacE: PTS system, lactose/cellobiose family IIC component 12 438 3.5E-157 T 29-03-2018 IPR004501 Phosphotransferase system, EIIC component, type 3 GO:0008982|GO:0009401|GO:0016021 AM354_RS10205 4beeade45888404fc38ab808c0a1d106 453 TIGRFAM TIGR00359 cello_pts_IIC: PTS system, cellobiose-specific IIC component 12 438 3.5E-157 T 29-03-2018 IPR004796 Phosphotransferase system, cellobiose-type IIC component GO:0008982|GO:0009401|GO:0016021 AM354_RS10205 4beeade45888404fc38ab808c0a1d106 453 Pfam PF02378 Phosphotransferase system, EIIC 30 363 2.3E-43 T 29-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AM354_RS00850 0344c139ce61003f8adb94a4cb36694c 293 SUPERFAMILY SSF89550 176 287 7.26E-52 T 29-03-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 AM354_RS00850 0344c139ce61003f8adb94a4cb36694c 293 SUPERFAMILY SSF89550 13 94 7.26E-52 T 29-03-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 AM354_RS00850 0344c139ce61003f8adb94a4cb36694c 293 Pfam PF02811 PHP domain 15 169 4.7E-8 T 29-03-2018 IPR004013 PHP domain GO:0003824 AM354_RS00850 0344c139ce61003f8adb94a4cb36694c 293 Gene3D G3DSA:3.20.20.140 10 266 1.6E-40 T 29-03-2018 AM354_RS00850 0344c139ce61003f8adb94a4cb36694c 293 SMART SM00481 14 81 1.9E-17 T 29-03-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal AM354_RS09390 4112c6d92822872b35f899973d940853 188 PIRSF PIRSF019876 1 188 7.1E-80 T 29-03-2018 IPR010495 Haem-binding HasA AM354_RS09390 4112c6d92822872b35f899973d940853 188 SUPERFAMILY SSF54621 3 174 1.31E-73 T 29-03-2018 IPR010495 Haem-binding HasA AM354_RS09390 4112c6d92822872b35f899973d940853 188 Gene3D G3DSA:3.30.1500.10 1 178 2.0E-50 T 29-03-2018 IPR010495 Haem-binding HasA AM354_RS09390 4112c6d92822872b35f899973d940853 188 Pfam PF06438 Heme-binding protein A (HasA) 1 179 1.8E-52 T 29-03-2018 IPR010495 Haem-binding HasA AM354_RS23765 087240dde8c667b07591bfb51a3e66fe 355 Pfam PF13515 Fusaric acid resistance protein-like 33 158 1.9E-14 T 29-03-2018 AM354_RS20490 5af02b43d8b47bd8c76e761a6b3c787e 314 Pfam PF00753 Metallo-beta-lactamase superfamily 81 263 1.7E-23 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS20490 5af02b43d8b47bd8c76e761a6b3c787e 314 Gene3D G3DSA:3.60.15.10 22 314 4.4E-48 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS20490 5af02b43d8b47bd8c76e761a6b3c787e 314 SUPERFAMILY SSF56281 22 309 3.01E-48 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS20490 5af02b43d8b47bd8c76e761a6b3c787e 314 SMART SM00849 83 288 2.1E-20 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS10915 d50e1faa982de97a216610eeac9c0a53 258 Pfam PF03883 Peroxide stress protein YaaA 1 243 9.6E-91 T 29-03-2018 IPR005583 Peroxide stress protein YaaA AM354_RS10915 d50e1faa982de97a216610eeac9c0a53 258 Hamap MF_00652 UPF0246 protein YaaA [yaaA]. 1 255 37.69 T 29-03-2018 IPR005583 Peroxide stress protein YaaA AM354_RS17220 d2c5746e0a5339c652eb0b81365d79ea 421 PIRSF PIRSF000521 9 128 5.3E-4 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM354_RS17220 d2c5746e0a5339c652eb0b81365d79ea 421 PIRSF PIRSF000521 125 421 8.7E-42 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM354_RS17220 d2c5746e0a5339c652eb0b81365d79ea 421 Gene3D G3DSA:3.90.1150.10 305 421 4.6E-29 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS17220 d2c5746e0a5339c652eb0b81365d79ea 421 Gene3D G3DSA:3.40.640.10 175 304 8.9E-49 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS17220 d2c5746e0a5339c652eb0b81365d79ea 421 Pfam PF00202 Aminotransferase class-III 22 419 1.6E-128 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM354_RS17220 d2c5746e0a5339c652eb0b81365d79ea 421 Gene3D G3DSA:3.90.1150.10 2 160 8.7E-38 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS17220 d2c5746e0a5339c652eb0b81365d79ea 421 SUPERFAMILY SSF53383 24 419 7.18E-132 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS17220 d2c5746e0a5339c652eb0b81365d79ea 421 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 235 272 - T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM354_RS17220 d2c5746e0a5339c652eb0b81365d79ea 421 TIGRFAM TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase 8 420 1.5E-196 T 29-03-2018 IPR004632 4-aminobutyrate aminotransferase, bacterial GO:0003867|GO:0009448 AM354_RS00430 ba7eb826b81b64d054ad87e9e6c323fe 135 Pfam PF00816 H-NS histone family 32 127 9.6E-19 T 29-03-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 AM354_RS00430 ba7eb826b81b64d054ad87e9e6c323fe 135 Gene3D G3DSA:1.10.287.1050 1 57 4.4E-26 T 29-03-2018 IPR027454 Histone-like protein H-NS family, oligomerisation domain GO:0046983 AM354_RS00430 ba7eb826b81b64d054ad87e9e6c323fe 135 PIRSF PIRSF002096 1 135 3.1E-56 T 29-03-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 AM354_RS00430 ba7eb826b81b64d054ad87e9e6c323fe 135 Gene3D G3DSA:4.10.430.10 93 135 2.4E-18 T 29-03-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 AM354_RS00430 ba7eb826b81b64d054ad87e9e6c323fe 135 SUPERFAMILY SSF81273 2 58 4.32E-18 T 29-03-2018 AM354_RS00430 ba7eb826b81b64d054ad87e9e6c323fe 135 SMART SM00528 87 135 5.0E-23 T 29-03-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 AM354_RS00430 ba7eb826b81b64d054ad87e9e6c323fe 135 SUPERFAMILY SSF81273 93 135 1.14E-11 T 29-03-2018 AM354_RS09220 75445fb8be1267416f060f615ee80f94 186 Gene3D G3DSA:2.60.40.1620 43 175 6.6E-51 T 29-03-2018 IPR021658 Domain of unknown function DUF3251 AM354_RS09220 75445fb8be1267416f060f615ee80f94 186 Pfam PF11622 Protein of unknown function (DUF3251) 20 182 4.9E-59 T 29-03-2018 IPR021658 Domain of unknown function DUF3251 AM354_RS25745 6229b374d07b1fe11e96182515d4bcb4 268 SUPERFAMILY SSF56281 25 266 1.97E-26 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS25745 6229b374d07b1fe11e96182515d4bcb4 268 Pfam PF00753 Metallo-beta-lactamase superfamily 32 226 2.2E-12 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS25745 6229b374d07b1fe11e96182515d4bcb4 268 SMART SM00849 31 264 1.3E-5 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS25745 6229b374d07b1fe11e96182515d4bcb4 268 Gene3D G3DSA:3.60.15.10 19 268 1.3E-26 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS09370 3ca765dd31be143e778044e6c591aebe 257 Pfam PF01614 Bacterial transcriptional regulator 127 245 6.8E-17 T 29-03-2018 IPR014757 Transcription regulator IclR, C-terminal AM354_RS09370 3ca765dd31be143e778044e6c591aebe 257 Pfam PF09339 IclR helix-turn-helix domain 3 59 4.0E-12 T 29-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AM354_RS09370 3ca765dd31be143e778044e6c591aebe 257 SMART SM00346 1 95 1.5E-11 T 29-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AM354_RS09370 3ca765dd31be143e778044e6c591aebe 257 Gene3D G3DSA:3.30.450.40 81 256 1.9E-33 T 29-03-2018 IPR029016 GAF domain-like AM354_RS09370 3ca765dd31be143e778044e6c591aebe 257 SUPERFAMILY SSF55781 64 248 2.29E-33 T 29-03-2018 IPR029016 GAF domain-like AM354_RS09370 3ca765dd31be143e778044e6c591aebe 257 SUPERFAMILY SSF46785 2 78 1.75E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS09370 3ca765dd31be143e778044e6c591aebe 257 Gene3D G3DSA:1.10.10.10 1 67 2.6E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS01865 a3b763edf606be94c7ff69854ca1cb97 118 Gene3D G3DSA:3.40.50.10400 1 118 6.4E-20 T 29-03-2018 IPR027269 Hypothetical PA1492 domain AM354_RS01865 a3b763edf606be94c7ff69854ca1cb97 118 Pfam PF09152 Domain of unknown function (DUF1937) 2 112 7.0E-43 T 29-03-2018 IPR015235 Domain of unknown function DUF1937 AM354_RS01865 a3b763edf606be94c7ff69854ca1cb97 118 SUPERFAMILY SSF52309 1 117 2.84E-34 T 29-03-2018 AM354_RS20270 730edbd4c48041422c1752b7477e583f 129 Gene3D G3DSA:3.10.180.10 2 129 1.4E-28 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS20270 730edbd4c48041422c1752b7477e583f 129 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 126 4.1E-22 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AM354_RS20270 730edbd4c48041422c1752b7477e583f 129 SUPERFAMILY SSF54593 3 128 4.3E-33 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS10940 2afb5d72f0abff630bf99210c28e1f94 228 PIRSF PIRSF004808 1 228 3.3E-61 T 29-03-2018 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 AM354_RS10940 2afb5d72f0abff630bf99210c28e1f94 228 Pfam PF00588 SpoU rRNA Methylase family 3 153 1.1E-33 T 29-03-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AM354_RS10940 2afb5d72f0abff630bf99210c28e1f94 228 SUPERFAMILY SSF75217 2 156 6.54E-31 T 29-03-2018 IPR029028 Alpha/beta knot methyltransferases AM354_RS10940 2afb5d72f0abff630bf99210c28e1f94 228 Gene3D G3DSA:3.40.1280.10 1 160 4.5E-33 T 29-03-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AM354_RS10940 2afb5d72f0abff630bf99210c28e1f94 228 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 2 225 5.6E-68 T 29-03-2018 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 AM354_RS24810 df80f6572143efacdbbc6ee33baafe56 291 Gene3D G3DSA:3.40.190.10 82 179 7.9E-18 T 29-03-2018 AM354_RS24810 df80f6572143efacdbbc6ee33baafe56 291 SUPERFAMILY SSF53850 93 289 5.43E-34 T 29-03-2018 AM354_RS24810 df80f6572143efacdbbc6ee33baafe56 291 Gene3D G3DSA:1.10.10.10 1 81 4.9E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS24810 df80f6572143efacdbbc6ee33baafe56 291 SUPERFAMILY SSF46785 5 113 3.63E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS24810 df80f6572143efacdbbc6ee33baafe56 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 67 4.3E-15 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS24810 df80f6572143efacdbbc6ee33baafe56 291 Pfam PF03466 LysR substrate binding domain 93 288 2.8E-34 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS24810 df80f6572143efacdbbc6ee33baafe56 291 Gene3D G3DSA:3.40.190.10 180 259 3.5E-15 T 29-03-2018 AM354_RS23090 ffda02dc3a5effa97a3f638c368d889f 151 Hamap MF_01101 UPF0208 membrane protein YfbV [yfbV]. 9 151 36.642 T 29-03-2018 IPR007334 Uncharacterised protein family UPF0208 AM354_RS23090 ffda02dc3a5effa97a3f638c368d889f 151 Pfam PF04217 Protein of unknown function, DUF412 11 149 5.2E-61 T 29-03-2018 IPR007334 Uncharacterised protein family UPF0208 AM354_RS09235 6c12a9d7292c0063ace3f1a6136b8bce 110 PRINTS PR01853 Bacterial YajC preprotein translocase signature 21 41 7.7E-17 T 29-03-2018 IPR003849 Preprotein translocase YajC AM354_RS09235 6c12a9d7292c0063ace3f1a6136b8bce 110 PRINTS PR01853 Bacterial YajC preprotein translocase signature 59 77 7.7E-17 T 29-03-2018 IPR003849 Preprotein translocase YajC AM354_RS09235 6c12a9d7292c0063ace3f1a6136b8bce 110 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 21 102 8.6E-33 T 29-03-2018 IPR003849 Preprotein translocase YajC AM354_RS09235 6c12a9d7292c0063ace3f1a6136b8bce 110 SMART SM01323 19 102 1.4E-34 T 29-03-2018 IPR003849 Preprotein translocase YajC AM354_RS09235 6c12a9d7292c0063ace3f1a6136b8bce 110 Pfam PF02699 Preprotein translocase subunit 23 99 8.6E-26 T 29-03-2018 IPR003849 Preprotein translocase YajC AM354_RS02680 5ee6812dd4ace84faf692a330ee258c7 783 Gene3D G3DSA:2.170.130.10 113 264 3.8E-22 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS02680 5ee6812dd4ace84faf692a330ee258c7 783 Pfam PF07660 Secretin and TonB N terminus short domain 67 114 1.2E-9 T 29-03-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 AM354_RS02680 5ee6812dd4ace84faf692a330ee258c7 783 SMART SM00965 64 115 2.4E-13 T 29-03-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 AM354_RS02680 5ee6812dd4ace84faf692a330ee258c7 783 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 766 783 - T 29-03-2018 IPR010917 TonB-dependent receptor, conserved site AM354_RS02680 5ee6812dd4ace84faf692a330ee258c7 783 SUPERFAMILY SSF56935 124 783 4.58E-121 T 29-03-2018 AM354_RS02680 5ee6812dd4ace84faf692a330ee258c7 783 Pfam PF07715 TonB-dependent Receptor Plug Domain 140 253 1.8E-19 T 29-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM354_RS02680 5ee6812dd4ace84faf692a330ee258c7 783 Pfam PF00593 TonB dependent receptor 338 781 7.4E-50 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS02680 5ee6812dd4ace84faf692a330ee258c7 783 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 141 783 6.3E-137 T 29-03-2018 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 AM354_RS02680 5ee6812dd4ace84faf692a330ee258c7 783 Gene3D G3DSA:2.40.170.20 265 783 1.0E-84 T 29-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM354_RS12160 fff438c9e382a7750567406b7076bc18 176 Gene3D G3DSA:3.90.80.10 3 176 3.3E-53 T 29-03-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AM354_RS12160 fff438c9e382a7750567406b7076bc18 176 Pfam PF00719 Inorganic pyrophosphatase 18 172 5.4E-55 T 29-03-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AM354_RS12160 fff438c9e382a7750567406b7076bc18 176 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 66 72 - T 29-03-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AM354_RS12160 fff438c9e382a7750567406b7076bc18 176 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 36.994 T 29-03-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AM354_RS12160 fff438c9e382a7750567406b7076bc18 176 SUPERFAMILY SSF50324 6 173 7.85E-67 T 29-03-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AM354_RS11700 1fd40c1ada1b854269efed5d915f984b 167 Gene3D G3DSA:3.40.630.30 1 157 5.3E-29 T 29-03-2018 AM354_RS11700 1fd40c1ada1b854269efed5d915f984b 167 SUPERFAMILY SSF55729 9 167 1.11E-31 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS11700 1fd40c1ada1b854269efed5d915f984b 167 Pfam PF00583 Acetyltransferase (GNAT) family 43 144 7.6E-14 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS17880 1555357cc34d80e0334c1b997df5ce2a 126 Pfam PF04234 CopC domain 24 125 3.5E-23 T 29-03-2018 IPR007348 CopC domain GO:0005507|GO:0042597|GO:0046688 AM354_RS17880 1555357cc34d80e0334c1b997df5ce2a 126 SUPERFAMILY SSF81296 23 126 7.7E-30 T 29-03-2018 IPR014756 Immunoglobulin E-set AM354_RS17880 1555357cc34d80e0334c1b997df5ce2a 126 Gene3D G3DSA:2.60.40.1220 23 126 6.8E-28 T 29-03-2018 AM354_RS09815 93c64052fcdfba7df2d140a04bee3dd3 343 SUPERFAMILY SSF143631 29 339 7.06E-102 T 29-03-2018 IPR003374 ApbE-like domain AM354_RS09815 93c64052fcdfba7df2d140a04bee3dd3 343 PIRSF PIRSF006268 5 341 4.6E-92 T 29-03-2018 IPR024932 Flavin transferase ApbE GO:0017013 AM354_RS09815 93c64052fcdfba7df2d140a04bee3dd3 343 Gene3D G3DSA:3.10.520.10 34 326 9.2E-61 T 29-03-2018 AM354_RS09815 93c64052fcdfba7df2d140a04bee3dd3 343 Pfam PF02424 ApbE family 36 312 1.4E-85 T 29-03-2018 IPR024932 Flavin transferase ApbE GO:0017013 AM354_RS22850 4894813bb2b82e519c8d32681dd72fd8 298 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 61 264 1.2E-8 T 29-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase AM354_RS22850 4894813bb2b82e519c8d32681dd72fd8 298 Gene3D G3DSA:3.60.10.10 45 294 6.6E-34 T 29-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase AM354_RS22850 4894813bb2b82e519c8d32681dd72fd8 298 SUPERFAMILY SSF56219 55 296 4.45E-33 T 29-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase AM354_RS13365 5db0f4592bd45c4f0f3c536f60cc5d86 365 Pfam PF00953 Glycosyl transferase family 4 76 232 7.6E-27 T 29-03-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193 AM354_RS13365 5db0f4592bd45c4f0f3c536f60cc5d86 365 Hamap MF_02030 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase [wecA]. 9 353 28.319 T 29-03-2018 IPR012750 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase GO:0000287|GO:0009103|GO:0009276|GO:0016021|GO:0016780|GO:0030145 MetaCyc: PWY-7290|MetaCyc: PWY-7530|MetaCyc: PWY-7815|MetaCyc: PWY-7816|MetaCyc: PWY-7819 AM354_RS13365 5db0f4592bd45c4f0f3c536f60cc5d86 365 TIGRFAM TIGR02380 ECA_wecA: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 8 350 5.0E-162 T 29-03-2018 IPR012750 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase GO:0000287|GO:0009103|GO:0009276|GO:0016021|GO:0016780|GO:0030145 MetaCyc: PWY-7290|MetaCyc: PWY-7530|MetaCyc: PWY-7815|MetaCyc: PWY-7816|MetaCyc: PWY-7819 AM354_RS05225 17fee75a963cf60f64f028e98d5e18c5 403 SUPERFAMILY SSF53383 5 395 3.59E-101 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS05225 17fee75a963cf60f64f028e98d5e18c5 403 Pfam PF00155 Aminotransferase class I and II 50 390 2.7E-69 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM354_RS05225 17fee75a963cf60f64f028e98d5e18c5 403 Gene3D G3DSA:3.90.1150.10 291 402 2.4E-24 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS05225 17fee75a963cf60f64f028e98d5e18c5 403 Gene3D G3DSA:3.40.640.10 50 290 4.5E-51 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS05225 17fee75a963cf60f64f028e98d5e18c5 403 TIGRFAM TIGR01821 5aminolev_synth: 5-aminolevulinic acid synthase 5 400 8.9E-154 T 29-03-2018 IPR010961 Tetrapyrrole biosynthesis, 5-aminolevulinic acid synthase GO:0003870|GO:0030170|GO:0033014 KEGG: 00260+2.3.1.37|KEGG: 00860+2.3.1.37|MetaCyc: PWY-5189|MetaCyc: PWY-7536|Reactome: R-HSA-189451 AM354_RS11005 a50cdd0d49a4cc19711f429d75e26b0d 322 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 204 221 5.3E-8 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11005 a50cdd0d49a4cc19711f429d75e26b0d 322 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 30 47 5.3E-8 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11005 a50cdd0d49a4cc19711f429d75e26b0d 322 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 102 113 5.3E-8 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11005 a50cdd0d49a4cc19711f429d75e26b0d 322 Pfam PF00106 short chain dehydrogenase 30 227 2.3E-20 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS11005 a50cdd0d49a4cc19711f429d75e26b0d 322 Gene3D G3DSA:3.40.50.720 13 319 9.7E-52 T 29-03-2018 AM354_RS11005 a50cdd0d49a4cc19711f429d75e26b0d 322 SUPERFAMILY SSF51735 27 280 9.32E-44 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS21390 0dc7edf55d90d176d74e38b4578d3b2c 83 SUPERFAMILY SSF46955 6 66 6.23E-7 T 29-03-2018 IPR009061 Putative DNA-binding domain AM354_RS21390 0dc7edf55d90d176d74e38b4578d3b2c 83 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 8 52 4.5E-14 T 29-03-2018 IPR010260 DNA-binding transcriptional activator AlpA AM354_RS21390 0dc7edf55d90d176d74e38b4578d3b2c 83 Gene3D G3DSA:1.10.10.10 5 63 6.2E-7 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS09560 415825b6a20357e0ca169288de99366e 367 Pfam PF07759 Protein of unknown function (DUF1615) 55 364 1.4E-146 T 29-03-2018 IPR011673 Protein of unknown function DUF1615 AM354_RS09560 415825b6a20357e0ca169288de99366e 367 Gene3D G3DSA:3.40.190.10 10 335 0.001 T 29-03-2018 AM354_RS09560 415825b6a20357e0ca169288de99366e 367 ProDom PD041438 LIPOPROTEIN YAIW PRECURSOR SIGNAL MEMBRANE OUTER LIPOPROTEIN ECS0428 XAC0592 SECRETED 41 364 9.0E-147 T 29-03-2018 IPR011673 Protein of unknown function DUF1615 AM354_RS25285 a8fba83058090c86ffb85e38912aafce 271 Pfam PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) 38 243 2.2E-44 T 29-03-2018 IPR005519 Acid phosphatase, class B-like AM354_RS25285 a8fba83058090c86ffb85e38912aafce 271 TIGRFAM TIGR01533 lipo_e_P4: 5'-nucleotidase, lipoprotein e(P4) family 11 264 1.8E-83 T 29-03-2018 IPR006423 5-nucleotidase lipoprotein e(P4) GO:0009279 AM354_RS25285 a8fba83058090c86ffb85e38912aafce 271 Gene3D G3DSA:3.40.50.1000 45 207 6.8E-22 T 29-03-2018 IPR023214 HAD-like domain AM354_RS25285 a8fba83058090c86ffb85e38912aafce 271 PIRSF PIRSF019271 1 271 1.1E-88 T 29-03-2018 IPR006423 5-nucleotidase lipoprotein e(P4) GO:0009279 AM354_RS25285 a8fba83058090c86ffb85e38912aafce 271 SUPERFAMILY SSF56784 58 247 5.75E-40 T 29-03-2018 IPR023214 HAD-like domain AM354_RS04720 ea5462c5286a6c4d3f3ea473740c2358 434 Gene3D G3DSA:3.50.50.60 137 348 2.4E-37 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS04720 ea5462c5286a6c4d3f3ea473740c2358 434 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 172 197 1.8E-7 T 29-03-2018 AM354_RS04720 ea5462c5286a6c4d3f3ea473740c2358 434 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 1.8E-7 T 29-03-2018 AM354_RS04720 ea5462c5286a6c4d3f3ea473740c2358 434 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 310 317 1.8E-7 T 29-03-2018 AM354_RS04720 ea5462c5286a6c4d3f3ea473740c2358 434 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 115 133 4.1E-15 T 29-03-2018 AM354_RS04720 ea5462c5286a6c4d3f3ea473740c2358 434 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 295 317 4.1E-15 T 29-03-2018 AM354_RS04720 ea5462c5286a6c4d3f3ea473740c2358 434 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 4.1E-15 T 29-03-2018 AM354_RS04720 ea5462c5286a6c4d3f3ea473740c2358 434 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 172 190 4.1E-15 T 29-03-2018 AM354_RS04720 ea5462c5286a6c4d3f3ea473740c2358 434 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 338 9.6E-65 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS04720 ea5462c5286a6c4d3f3ea473740c2358 434 Gene3D G3DSA:3.40.50.720 1 136 1.8E-12 T 29-03-2018 AM354_RS04720 ea5462c5286a6c4d3f3ea473740c2358 434 SUPERFAMILY SSF51905 3 345 4.12E-32 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS26220 e972cc24c9753b41b2f700bc925ab235 83 Pfam PF07820 TraC-like protein 15 80 1.6E-15 T 29-03-2018 IPR012930 TraC-like GO:0000746 AM354_RS02230 58b3f36c5fc9bd0c4e845fda250b42e3 345 SUPERFAMILY SSF51679 1 344 2.24E-78 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AM354_RS02230 58b3f36c5fc9bd0c4e845fda250b42e3 345 Gene3D G3DSA:3.20.20.30 1 345 1.5E-72 T 29-03-2018 AM354_RS02230 58b3f36c5fc9bd0c4e845fda250b42e3 345 Pfam PF00296 Luciferase-like monooxygenase 1 314 1.2E-53 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AM354_RS18915 ecfc700bd7eba3848abf1e35c143d24f 350 Pfam PF02625 XdhC and CoxI family 17 81 5.4E-17 T 29-03-2018 IPR003777 XdhC- CoxI AM354_RS18915 ecfc700bd7eba3848abf1e35c143d24f 350 Gene3D G3DSA:3.40.50.720 54 344 2.1E-6 T 29-03-2018 AM354_RS18915 ecfc700bd7eba3848abf1e35c143d24f 350 Pfam PF13478 XdhC Rossmann domain 168 313 6.1E-34 T 29-03-2018 IPR027051 XdhC Rossmann domain AM354_RS00395 e91389d46454b606f10340bc0b94657c 282 Pfam PF01842 ACT domain 10 70 1.0E-6 T 29-03-2018 IPR002912 ACT domain AM354_RS00395 e91389d46454b606f10340bc0b94657c 282 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 10 282 1.0E-130 T 29-03-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 AM354_RS00395 e91389d46454b606f10340bc0b94657c 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 88 110 3.7E-69 T 29-03-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 AM354_RS00395 e91389d46454b606f10340bc0b94657c 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 256 281 3.7E-69 T 29-03-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 AM354_RS00395 e91389d46454b606f10340bc0b94657c 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 110 137 3.7E-69 T 29-03-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 AM354_RS00395 e91389d46454b606f10340bc0b94657c 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 11 37 3.7E-69 T 29-03-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 AM354_RS00395 e91389d46454b606f10340bc0b94657c 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 43 55 3.7E-69 T 29-03-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 AM354_RS00395 e91389d46454b606f10340bc0b94657c 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 234 256 3.7E-69 T 29-03-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 AM354_RS00395 e91389d46454b606f10340bc0b94657c 282 Gene3D G3DSA:3.30.70.260 4 89 3.7E-11 T 29-03-2018 AM354_RS00395 e91389d46454b606f10340bc0b94657c 282 PIRSF PIRSF036480 6 282 6.9E-115 T 29-03-2018 AM354_RS00395 e91389d46454b606f10340bc0b94657c 282 SUPERFAMILY SSF55021 8 59 2.5E-8 T 29-03-2018 AM354_RS00395 e91389d46454b606f10340bc0b94657c 282 Gene3D G3DSA:3.40.50.170 90 279 6.6E-53 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM354_RS00395 e91389d46454b606f10340bc0b94657c 282 Pfam PF00551 Formyl transferase 88 264 6.3E-55 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM354_RS00395 e91389d46454b606f10340bc0b94657c 282 SUPERFAMILY SSF53328 88 281 3.27E-59 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM354_RS00395 e91389d46454b606f10340bc0b94657c 282 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 6 282 46.017 T 29-03-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 AM354_RS26060 6ca03f5897d7672fd3a3aeab41f36096 401 SUPERFAMILY SSF103473 14 392 1.7E-49 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS26060 6ca03f5897d7672fd3a3aeab41f36096 401 Hamap MF_01529 Multidrug resistance protein MdtH [mdtH]. 1 401 40.459 T 29-03-2018 IPR022855 Multidrug resistance protein MdtH AM354_RS26060 6ca03f5897d7672fd3a3aeab41f36096 401 Gene3D G3DSA:1.20.1250.20 9 194 8.1E-24 T 29-03-2018 AM354_RS26060 6ca03f5897d7672fd3a3aeab41f36096 401 Gene3D G3DSA:1.20.1250.20 196 398 5.0E-19 T 29-03-2018 AM354_RS26060 6ca03f5897d7672fd3a3aeab41f36096 401 Pfam PF07690 Major Facilitator Superfamily 20 238 1.9E-21 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS12105 97c41b47561e920c8f97a50e8c6eafa9 103 SUPERFAMILY SSF141091 1 102 6.41E-37 T 29-03-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS12105 97c41b47561e920c8f97a50e8c6eafa9 103 ProSitePatterns PS01169 Ribosomal protein L21 signature. 72 94 - T 29-03-2018 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS12105 97c41b47561e920c8f97a50e8c6eafa9 103 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 101 8.2E-38 T 29-03-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS12105 97c41b47561e920c8f97a50e8c6eafa9 103 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 101 5.2E-45 T 29-03-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS12105 97c41b47561e920c8f97a50e8c6eafa9 103 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 26.867 T 29-03-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS14405 3e141d586da7fcabecf519bd9b69f8f3 348 Gene3D G3DSA:3.40.50.2000 1 159 3.7E-33 T 29-03-2018 AM354_RS14405 3e141d586da7fcabecf519bd9b69f8f3 348 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 69 324 7.2E-85 T 29-03-2018 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 AM354_RS14405 3e141d586da7fcabecf519bd9b69f8f3 348 Gene3D G3DSA:3.40.50.2000 163 348 1.7E-44 T 29-03-2018 AM354_RS14405 3e141d586da7fcabecf519bd9b69f8f3 348 TIGRFAM TIGR02195 heptsyl_trn_II: lipopolysaccharide heptosyltransferase II 2 343 5.1E-166 T 29-03-2018 IPR011910 ADP-heptose--LPS heptosyltransferase 2 GO:0009103|GO:0016757 AM354_RS14405 3e141d586da7fcabecf519bd9b69f8f3 348 SUPERFAMILY SSF53756 1 343 7.74E-101 T 29-03-2018 AM354_RS18780 1808776d2f8d3b65d925e44d2dbe36ef 539 Pfam PF07514 Putative helicase 31 248 2.2E-27 T 29-03-2018 IPR011119 Uncharacterised domain, helicase/relaxase, putative AM354_RS18780 1808776d2f8d3b65d925e44d2dbe36ef 539 TIGRFAM TIGR03760 ICE_TraI_Pfluor: integrating conjugative element relaxase, PFGI-1 class 30 239 1.2E-63 T 29-03-2018 IPR022391 Integrating conjugative element relaxase, PFGI-1 class AM354_RS18780 1808776d2f8d3b65d925e44d2dbe36ef 539 SUPERFAMILY SSF46785 418 538 4.35E-28 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS18780 1808776d2f8d3b65d925e44d2dbe36ef 539 Pfam PF07515 Putative conjugal transfer nickase/helicase TraI C-term 420 536 2.6E-19 T 29-03-2018 IPR011093 Putative conjugal transfer nickase/helicase TraI, C-terminal AM354_RS18780 1808776d2f8d3b65d925e44d2dbe36ef 539 Gene3D G3DSA:2.40.10.200 438 537 1.3E-18 T 29-03-2018 AM354_RS14030 64af14737e6decd0f41635fb8ef0ce49 206 SUPERFAMILY SSF53335 4 204 1.13E-42 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS14030 64af14737e6decd0f41635fb8ef0ce49 206 PIRSF PIRSF003078 1 206 4.2E-64 T 29-03-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 AM354_RS14030 64af14737e6decd0f41635fb8ef0ce49 206 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 26 204 1.3E-57 T 29-03-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 AM354_RS14030 64af14737e6decd0f41635fb8ef0ce49 206 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 13 202 28.633 T 29-03-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 AM354_RS14030 64af14737e6decd0f41635fb8ef0ce49 206 Pfam PF02527 rRNA small subunit methyltransferase G 20 201 1.0E-61 T 29-03-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 AM354_RS14030 64af14737e6decd0f41635fb8ef0ce49 206 Gene3D G3DSA:3.40.50.150 1 206 1.4E-37 T 29-03-2018 AM354_RS24015 ab3928e5687bb0e1a6a98d8602ba96b2 396 SUPERFAMILY SSF103473 4 388 1.09E-54 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS24015 ab3928e5687bb0e1a6a98d8602ba96b2 396 Gene3D G3DSA:1.20.1250.20 197 395 3.0E-15 T 29-03-2018 AM354_RS24015 ab3928e5687bb0e1a6a98d8602ba96b2 396 Pfam PF07690 Major Facilitator Superfamily 19 349 5.8E-32 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS24015 ab3928e5687bb0e1a6a98d8602ba96b2 396 Hamap MF_00517 Probable sugar efflux transporter [sotB]. 1 390 29.123 T 29-03-2018 IPR023495 Sugar efflux transporter, putative AM354_RS24015 ab3928e5687bb0e1a6a98d8602ba96b2 396 Gene3D G3DSA:1.20.1250.20 3 196 3.8E-24 T 29-03-2018 AM354_RS08650 ae35b59d977f5a60d0b61a5bad1b4b17 293 Gene3D G3DSA:3.40.50.720 1 160 8.5E-33 T 29-03-2018 AM354_RS08650 ae35b59d977f5a60d0b61a5bad1b4b17 293 TIGRFAM TIGR01505 tartro_sem_red: 2-hydroxy-3-oxopropionate reductase 2 291 1.1E-130 T 29-03-2018 IPR006398 2-hydroxy-3-oxopropionate reductase GO:0008679|GO:0046487|GO:0055114 KEGG: 00630+1.1.1.60 AM354_RS08650 ae35b59d977f5a60d0b61a5bad1b4b17 293 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 163 283 6.5E-37 T 29-03-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 AM354_RS08650 ae35b59d977f5a60d0b61a5bad1b4b17 293 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 160 3.0E-48 T 29-03-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 AM354_RS08650 ae35b59d977f5a60d0b61a5bad1b4b17 293 PIRSF PIRSF000103 1 291 8.1E-76 T 29-03-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 AM354_RS08650 ae35b59d977f5a60d0b61a5bad1b4b17 293 Gene3D G3DSA:1.10.1040.10 161 287 3.6E-27 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM354_RS08650 ae35b59d977f5a60d0b61a5bad1b4b17 293 SUPERFAMILY SSF48179 162 289 3.85E-35 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM354_RS08650 ae35b59d977f5a60d0b61a5bad1b4b17 293 SUPERFAMILY SSF51735 1 160 5.05E-44 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS00640 81c9abbdea064acd2f0c3df83b80a680 66 SUPERFAMILY SSF47413 7 62 9.38E-8 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS00640 81c9abbdea064acd2f0c3df83b80a680 66 Gene3D G3DSA:1.10.260.40 1 65 3.1E-8 T 29-03-2018 AM354_RS12860 54424002655aecd148c1c7f05bab0dec 443 SUPERFAMILY SSF55920 163 438 1.31E-53 T 29-03-2018 IPR000994 Peptidase M24 AM354_RS12860 54424002655aecd148c1c7f05bab0dec 443 Hamap MF_01279 Xaa-Pro dipeptidase [pepQ]. 1 443 57.667 T 29-03-2018 IPR022846 Xaa-Pro dipeptidase GO:0016795 AM354_RS12860 54424002655aecd148c1c7f05bab0dec 443 Gene3D G3DSA:3.90.230.10 146 440 7.3E-49 T 29-03-2018 AM354_RS12860 54424002655aecd148c1c7f05bab0dec 443 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 335 347 - T 29-03-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site AM354_RS12860 54424002655aecd148c1c7f05bab0dec 443 Gene3D G3DSA:3.40.350.10 5 139 0.032 T 29-03-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal AM354_RS12860 54424002655aecd148c1c7f05bab0dec 443 Pfam PF00557 Metallopeptidase family M24 168 430 2.0E-43 T 29-03-2018 IPR000994 Peptidase M24 AM354_RS20280 5d89a51912bf7ed6724c13ebd37cf6a3 447 Pfam PF13520 Amino acid permease 7 420 5.5E-38 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM354_RS20280 5d89a51912bf7ed6724c13ebd37cf6a3 447 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 3 432 4.8E-136 T 29-03-2018 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 AM354_RS20280 5d89a51912bf7ed6724c13ebd37cf6a3 447 PIRSF PIRSF006060 1 435 1.2E-47 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM354_RS20155 eec8acca6e4bf95ee9c5e6a80b378fd0 129 Pfam PF11944 Protein of unknown function (DUF3461) 1 125 2.3E-54 T 29-03-2018 IPR020911 Uncharacterised protein family UPF0325 AM354_RS20155 eec8acca6e4bf95ee9c5e6a80b378fd0 129 ProDom PD080106 UPF0325 YAEH STRUCTURAL ECA1027 VV11856 YPTB3007 PBPRA2971 VV2560 VF1965 VC2264 1 125 1.0E-62 T 29-03-2018 IPR020911 Uncharacterised protein family UPF0325 AM354_RS20155 eec8acca6e4bf95ee9c5e6a80b378fd0 129 Hamap MF_01519 UPF0325 protein YaeH [yaeH]. 1 126 31.948 T 29-03-2018 IPR020911 Uncharacterised protein family UPF0325 AM354_RS16955 80b766136ade6313041d701c1388579b 182 Pfam PF02470 MlaD protein 39 116 1.1E-20 T 29-03-2018 IPR003399 Mce/MlaD AM354_RS16955 80b766136ade6313041d701c1388579b 182 TIGRFAM TIGR04430 OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD 3 152 1.1E-55 T 29-03-2018 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 AM354_RS25725 6853051615cb1122e732bfb66893d6e8 240 Pfam PF02613 Nitrate reductase delta subunit 52 157 2.2E-12 T 29-03-2018 IPR020945 DMSO/Nitrate reductase chaperone AM354_RS25725 6853051615cb1122e732bfb66893d6e8 240 TIGRFAM TIGR00684 narJ: nitrate reductase molybdenum cofactor assembly chaperone 9 161 3.8E-44 T 29-03-2018 IPR003765 Nitrate reductase chaperone, NarJ GO:0051082|GO:0051131 AM354_RS25725 6853051615cb1122e732bfb66893d6e8 240 Gene3D G3DSA:1.10.3480.10 24 237 2.2E-29 T 29-03-2018 IPR020945 DMSO/Nitrate reductase chaperone AM354_RS25725 6853051615cb1122e732bfb66893d6e8 240 SUPERFAMILY SSF89155 3 163 5.34E-31 T 29-03-2018 IPR020945 DMSO/Nitrate reductase chaperone AM354_RS24415 e8e50a52da265fde96bb902e5517c0b2 458 Gene3D G3DSA:1.20.1250.20 14 214 3.7E-36 T 29-03-2018 AM354_RS24415 e8e50a52da265fde96bb902e5517c0b2 458 Pfam PF07690 Major Facilitator Superfamily 30 398 1.6E-48 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS24415 e8e50a52da265fde96bb902e5517c0b2 458 Gene3D G3DSA:1.20.1250.20 241 442 2.1E-22 T 29-03-2018 AM354_RS24415 e8e50a52da265fde96bb902e5517c0b2 458 SUPERFAMILY SSF103473 12 438 3.66E-76 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS24415 e8e50a52da265fde96bb902e5517c0b2 458 ProSitePatterns PS00216 Sugar transport proteins signature 1. 79 95 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM354_RS24415 e8e50a52da265fde96bb902e5517c0b2 458 ProSitePatterns PS00217 Sugar transport proteins signature 2. 121 146 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM354_RS02365 87e03db0a13ddf00553a43c5bc9ba02d 291 Pfam PF07859 alpha/beta hydrolase fold 73 187 2.6E-15 T 29-03-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 AM354_RS02365 87e03db0a13ddf00553a43c5bc9ba02d 291 SUPERFAMILY SSF53474 16 280 1.3E-43 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS02365 87e03db0a13ddf00553a43c5bc9ba02d 291 Gene3D G3DSA:3.40.50.1820 59 260 8.2E-31 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS19385 568e7245287556ca184bfbc2a3e5c444 360 Gene3D G3DSA:1.10.3470.10 49 335 1.0E-26 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS19385 568e7245287556ca184bfbc2a3e5c444 360 Pfam PF02653 Branched-chain amino acid transport system / permease component 60 323 1.1E-29 T 29-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AM354_RS01000 a4396be07a41f46168fab649c3960fed 72 Pfam PF05433 Glycine zipper 2TM domain 34 71 3.6E-7 T 29-03-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 AM354_RS18840 2c6775ced0c4a26ce39b0c49cff5f206 380 SUPERFAMILY SSF102114 5 376 1.83E-110 T 29-03-2018 AM354_RS18840 2c6775ced0c4a26ce39b0c49cff5f206 380 Gene3D G3DSA:1.10.10.10 309 378 0.0021 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS18840 2c6775ced0c4a26ce39b0c49cff5f206 380 Gene3D G3DSA:3.20.20.70 4 308 9.3E-48 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS18840 2c6775ced0c4a26ce39b0c49cff5f206 380 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 7 368 2.1E-143 T 29-03-2018 IPR004559 Coproporphyrinogen III oxidase, oxygen-independent related GO:0004109|GO:0005737|GO:0006779|GO:0055114 AM354_RS18840 2c6775ced0c4a26ce39b0c49cff5f206 380 Pfam PF06969 HemN C-terminal domain 304 364 9.0E-11 T 29-03-2018 IPR010723 HemN, C-terminal AM354_RS18840 2c6775ced0c4a26ce39b0c49cff5f206 380 SMART SM00729 6 223 6.7E-53 T 29-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 AM354_RS18840 2c6775ced0c4a26ce39b0c49cff5f206 380 Pfam PF04055 Radical SAM superfamily 11 179 7.4E-18 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AM354_RS17135 54434dbd7ba8903cdedeaa5a4f70c960 123 Pfam PF06476 Protein of unknown function (DUF1090) 15 118 6.1E-38 T 29-03-2018 IPR009468 Protein of unknown function DUF1090 AM354_RS18480 32c4f4bd9f0daaacb32fc0c295fb6041 299 Pfam PF12834 Phage integrase, N-terminal 7 95 1.1E-35 T 29-03-2018 IPR024457 Putative integrase, N-terminal AM354_RS18480 32c4f4bd9f0daaacb32fc0c295fb6041 299 SUPERFAMILY SSF56349 12 281 5.3E-16 T 29-03-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AM354_RS18480 32c4f4bd9f0daaacb32fc0c295fb6041 299 Gene3D G3DSA:1.10.150.130 5 114 2.4E-7 T 29-03-2018 IPR023109 Integrase/recombinase, N-terminal AM354_RS18480 32c4f4bd9f0daaacb32fc0c295fb6041 299 Pfam PF12835 Integrase 108 255 1.1E-60 T 29-03-2018 IPR024456 Integrase catalytic domain, putative AM354_RS18480 32c4f4bd9f0daaacb32fc0c295fb6041 299 Gene3D G3DSA:1.10.443.10 116 290 4.7E-11 T 29-03-2018 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM354_RS25540 8df547d92b37ed1bf9f33faedf9490f6 281 TIGRFAM TIGR00145 TIGR00145: FTR1 family protein 1 261 6.5E-93 T 29-03-2018 IPR005217 Iron permease FTR1-like GO:0005381|GO:0005886|GO:0006827|GO:0033573 AM354_RS25540 8df547d92b37ed1bf9f33faedf9490f6 281 Pfam PF03239 Iron permease FTR1 family 1 255 3.8E-71 T 29-03-2018 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0006827|GO:0016020|GO:0033573 AM354_RS10230 f5e42191f95d6bd7984a029cebd4cf91 294 Gene3D G3DSA:2.120.10.30 4 107 1.5E-4 T 29-03-2018 IPR011042 Six-bladed beta-propeller, TolB-like AM354_RS10230 f5e42191f95d6bd7984a029cebd4cf91 294 SUPERFAMILY SSF63829 2 264 2.48E-24 T 29-03-2018 AM354_RS10230 f5e42191f95d6bd7984a029cebd4cf91 294 Gene3D G3DSA:2.120.10.30 108 285 1.1E-10 T 29-03-2018 IPR011042 Six-bladed beta-propeller, TolB-like AM354_RS21245 e3f5160426289e37be510c4020a45507 173 SMART SM00271 1 66 2.3E-9 T 29-03-2018 IPR001623 DnaJ domain AM354_RS21245 e3f5160426289e37be510c4020a45507 173 Pfam PF07743 HSCB C-terminal oligomerisation domain 88 163 6.8E-15 T 29-03-2018 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AM354_RS21245 e3f5160426289e37be510c4020a45507 173 SUPERFAMILY SSF47144 78 171 1.29E-23 T 29-03-2018 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AM354_RS21245 e3f5160426289e37be510c4020a45507 173 TIGRFAM TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB 13 169 6.1E-50 T 29-03-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AM354_RS21245 e3f5160426289e37be510c4020a45507 173 Gene3D G3DSA:1.20.1280.20 80 169 1.5E-23 T 29-03-2018 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AM354_RS21245 e3f5160426289e37be510c4020a45507 173 Gene3D G3DSA:1.10.287.110 1 79 6.1E-11 T 29-03-2018 IPR001623 DnaJ domain AM354_RS21245 e3f5160426289e37be510c4020a45507 173 SUPERFAMILY SSF46565 1 75 4.45E-18 T 29-03-2018 IPR001623 DnaJ domain AM354_RS21245 e3f5160426289e37be510c4020a45507 173 Hamap MF_00682 Co-chaperone protein HscB [hscB]. 1 170 24.788 T 29-03-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AM354_RS19675 78731d4ade68e2174de5e2f2963d8d33 192 Pfam PF10014 2OG-Fe dioxygenase 2 186 4.6E-52 T 29-03-2018 IPR018724 2OG-Fe dioxygenase AM354_RS14350 b3a9d09ce0001d9582577e3b87e24d65 425 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 33 211 2.0E-66 T 29-03-2018 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 AM354_RS14350 b3a9d09ce0001d9582577e3b87e24d65 425 Gene3D G3DSA:3.40.50.2000 51 191 0.0035 T 29-03-2018 AM354_RS14350 b3a9d09ce0001d9582577e3b87e24d65 425 Gene3D G3DSA:3.40.50.2000 211 402 4.1E-19 T 29-03-2018 AM354_RS14350 b3a9d09ce0001d9582577e3b87e24d65 425 SUPERFAMILY SSF53756 57 419 1.79E-21 T 29-03-2018 AM354_RS14350 b3a9d09ce0001d9582577e3b87e24d65 425 Pfam PF00534 Glycosyl transferases group 1 234 399 9.9E-17 T 29-03-2018 IPR001296 Glycosyl transferase, family 1 AM354_RS15820 ae012f5704b46909cfa8a810f2b18e0a 89 Gene3D G3DSA:1.10.1220.10 5 34 4.6E-8 T 29-03-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AM354_RS15820 ae012f5704b46909cfa8a810f2b18e0a 89 Gene3D G3DSA:1.10.10.610 35 71 0.001 T 29-03-2018 IPR010648 Uncharacterised protein family UPF0270 AM354_RS10170 59adf285d13d9edcb4b33d19eb1e9e38 170 Hamap MF_01114 Regulatory protein RecX [recX]. 2 170 15.281 T 29-03-2018 IPR003783 Regulatory protein RecX GO:0006282 AM354_RS10170 59adf285d13d9edcb4b33d19eb1e9e38 170 Gene3D G3DSA:1.10.10.10 74 118 4.9E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS10170 59adf285d13d9edcb4b33d19eb1e9e38 170 Gene3D G3DSA:1.10.10.10 2 73 1.5E-26 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS10170 59adf285d13d9edcb4b33d19eb1e9e38 170 Gene3D G3DSA:1.10.10.10 120 169 1.3E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS10170 59adf285d13d9edcb4b33d19eb1e9e38 170 Pfam PF02631 RecX family 56 166 1.4E-32 T 29-03-2018 IPR003783 Regulatory protein RecX GO:0006282 AM354_RS09410 a86be5cd896dc3bdf1b81061653268c7 66 Pfam PF16362 YaiA protein 6 62 6.5E-21 T 29-03-2018 IPR032303 YaiA protein AM354_RS12660 e6bae641ca34fbb59620237beffb43be 228 Hamap MF_00801 Endonuclease V [nfi]. 3 217 33.779 T 29-03-2018 IPR007581 Endonuclease V GO:0004519|GO:0006281 AM354_RS12660 e6bae641ca34fbb59620237beffb43be 228 Pfam PF04493 Endonuclease V 22 207 1.3E-69 T 29-03-2018 IPR007581 Endonuclease V GO:0004519|GO:0006281 AM354_RS04925 48b828773ee721f33620c0c80bee6ca5 184 Gene3D G3DSA:1.20.950.20 1 184 7.9E-31 T 29-03-2018 AM354_RS04925 48b828773ee721f33620c0c80bee6ca5 184 SUPERFAMILY SSF81342 5 179 2.75E-34 T 29-03-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 AM354_RS04925 48b828773ee721f33620c0c80bee6ca5 184 Pfam PF01292 Prokaryotic cytochrome b561 10 180 1.6E-24 T 29-03-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 AM354_RS19840 f87213c80e1893522b80f0a669c5ed18 183 Gene3D G3DSA:1.10.443.10 2 177 1.3E-39 T 29-03-2018 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM354_RS19840 f87213c80e1893522b80f0a669c5ed18 183 SUPERFAMILY SSF56349 2 179 2.15E-45 T 29-03-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AM354_RS19840 f87213c80e1893522b80f0a669c5ed18 183 Pfam PF00589 Phage integrase family 5 174 3.4E-45 T 29-03-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM354_RS06715 10d2aa29fa3e7d7aba803d9c1fb23192 279 SMART SM00862 25 102 7.5E-14 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS06715 10d2aa29fa3e7d7aba803d9c1fb23192 279 Gene3D G3DSA:1.10.10.10 2 108 6.4E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS06715 10d2aa29fa3e7d7aba803d9c1fb23192 279 SUPERFAMILY SSF46894 24 102 4.54E-16 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS06715 10d2aa29fa3e7d7aba803d9c1fb23192 279 Pfam PF00486 Transcriptional regulatory protein, C terminal 26 102 4.9E-13 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM354_RS02445 ed5bcbb707c3207d5bc21a3215bc5041 163 SUPERFAMILY SSF54427 44 157 4.91E-20 T 29-03-2018 IPR032710 NTF2-like domain AM354_RS02445 ed5bcbb707c3207d5bc21a3215bc5041 163 Pfam PF12680 SnoaL-like domain 47 145 1.8E-11 T 29-03-2018 IPR009959 Polyketide cyclase SnoaL-like domain AM354_RS02445 ed5bcbb707c3207d5bc21a3215bc5041 163 Gene3D G3DSA:3.10.450.50 37 163 1.6E-21 T 29-03-2018 AM354_RS01300 cd556479ee09ddc2ecf04d53a3bcf686 327 Pfam PF01544 CorA-like Mg2+ transporter protein 41 323 2.4E-64 T 29-03-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 AM354_RS01300 cd556479ee09ddc2ecf04d53a3bcf686 327 Gene3D G3DSA:1.20.58.340 139 261 2.2E-19 T 29-03-2018 AM354_RS01300 cd556479ee09ddc2ecf04d53a3bcf686 327 SUPERFAMILY SSF143865 11 258 3.27E-52 T 29-03-2018 AM354_RS01300 cd556479ee09ddc2ecf04d53a3bcf686 327 SUPERFAMILY SSF144083 263 324 2.48E-13 T 29-03-2018 AM354_RS01300 cd556479ee09ddc2ecf04d53a3bcf686 327 Gene3D G3DSA:1.20.58.340 262 327 5.5E-16 T 29-03-2018 AM354_RS01300 cd556479ee09ddc2ecf04d53a3bcf686 327 Hamap MF_01565 Zinc transport protein ZntB [zntB]. 1 327 69.403 T 29-03-2018 IPR023714 Zinc transport protein ZntB GO:0005385|GO:0005886|GO:0071577 AM354_RS01300 cd556479ee09ddc2ecf04d53a3bcf686 327 Gene3D G3DSA:3.30.460.20 1 138 3.0E-19 T 29-03-2018 AM354_RS00815 c9c09a9cf3cbbcdb1d22f4d342937242 104 SMART SM00749 42 103 4.5E-7 T 29-03-2018 IPR014004 Transport-associated and nodulation domain, bacteria AM354_RS00815 c9c09a9cf3cbbcdb1d22f4d342937242 104 Pfam PF04972 BON domain 37 104 2.2E-19 T 29-03-2018 IPR007055 BON domain AM354_RS00405 b4d9f0d834abc3a72d412f89ee16b0f0 300 SUPERFAMILY SSF52151 218 294 1.73E-53 T 29-03-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AM354_RS00405 b4d9f0d834abc3a72d412f89ee16b0f0 300 SUPERFAMILY SSF52151 1 180 1.73E-53 T 29-03-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AM354_RS00405 b4d9f0d834abc3a72d412f89ee16b0f0 300 Pfam PF01734 Patatin-like phospholipase 8 165 3.3E-21 T 29-03-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 AM354_RS00405 b4d9f0d834abc3a72d412f89ee16b0f0 300 Gene3D G3DSA:3.40.1090.10 2 286 2.1E-36 T 29-03-2018 AM354_RS12510 e81024c9bbb44ff998edac8c5616d0aa 206 PIRSF PIRSF020606 1 204 1.1E-75 T 29-03-2018 IPR014509 Uncharacterised conserved protein UCP020606 AM354_RS12510 e81024c9bbb44ff998edac8c5616d0aa 206 Pfam PF09997 Predicted membrane protein (DUF2238) 42 182 3.9E-54 T 29-03-2018 IPR014509 Uncharacterised conserved protein UCP020606 AM354_RS21790 8a87c1fe2b533e7899c5e6b5ea1a7376 112 SUPERFAMILY SSF160113 4 61 1.26E-18 T 29-03-2018 IPR010879 Domain of unknown function DUF1508 AM354_RS21790 8a87c1fe2b533e7899c5e6b5ea1a7376 112 Gene3D G3DSA:3.30.160.160 5 49 4.0E-18 T 29-03-2018 IPR010879 Domain of unknown function DUF1508 AM354_RS21790 8a87c1fe2b533e7899c5e6b5ea1a7376 112 Gene3D G3DSA:3.30.160.160 57 100 4.4E-14 T 29-03-2018 IPR010879 Domain of unknown function DUF1508 AM354_RS21790 8a87c1fe2b533e7899c5e6b5ea1a7376 112 Pfam PF07411 Domain of unknown function (DUF1508) 63 109 3.5E-22 T 29-03-2018 IPR010879 Domain of unknown function DUF1508 AM354_RS21790 8a87c1fe2b533e7899c5e6b5ea1a7376 112 Pfam PF07411 Domain of unknown function (DUF1508) 11 58 5.7E-22 T 29-03-2018 IPR010879 Domain of unknown function DUF1508 AM354_RS21790 8a87c1fe2b533e7899c5e6b5ea1a7376 112 SUPERFAMILY SSF160113 55 109 5.36E-17 T 29-03-2018 IPR010879 Domain of unknown function DUF1508 AM354_RS09280 5c01327de049d6f01d42e48550e2456d 92 Pfam PF05015 RelE-like toxin of type II toxin-antitoxin system HigB 4 92 3.4E-19 T 29-03-2018 IPR007711 Toxin HigB-1 AM354_RS09280 5c01327de049d6f01d42e48550e2456d 92 SUPERFAMILY SSF143011 1 92 2.35E-15 T 29-03-2018 IPR035095 Toxin RelE-like domain AM354_RS09280 5c01327de049d6f01d42e48550e2456d 92 Gene3D G3DSA:3.30.2310.20 1 92 2.7E-26 T 29-03-2018 AM354_RS14850 cff1337c8b262960fbb26199b545525d 162 PIRSF PIRSF034445 1 158 1.0E-28 T 29-03-2018 IPR012899 LTXXQ motif family protein GO:0042597 AM354_RS14850 cff1337c8b262960fbb26199b545525d 162 Pfam PF07813 LTXXQ motif family protein 48 139 1.7E-19 T 29-03-2018 IPR012899 LTXXQ motif family protein GO:0042597 AM354_RS12675 53ce68d612efbbd507bc6990d65ea7af 163 PIRSF PIRSF016548 1 160 7.1E-55 T 29-03-2018 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 AM354_RS12675 53ce68d612efbbd507bc6990d65ea7af 163 Hamap MF_01181 Regulator of sigma D [rsd]. 1 153 39.326 T 29-03-2018 IPR023785 Regulator of RNA polymerase sigma(70) subunit, Rsd AM354_RS12675 53ce68d612efbbd507bc6990d65ea7af 163 Pfam PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ 1 148 1.3E-57 T 29-03-2018 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 AM354_RS23335 fd5ff657483b5473eeb386d75597cc4b 133 Pfam PF13811 Domain of unknown function (DUF4186) 9 114 5.1E-49 T 29-03-2018 IPR020378 Protein of unknown function DUF4186 AM354_RS23335 fd5ff657483b5473eeb386d75597cc4b 133 ProDom PD076485 YNEG CYTOPLASMIC ECS2130 STY1535 7 115 1.0E-36 T 29-03-2018 IPR020378 Protein of unknown function DUF4186 AM354_RS23605 ffc8271e352135ac3380341f4ec9646b 414 PRINTS PR00166 Aromatic amino acid permease signature 19 42 1.6E-97 T 29-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM354_RS23605 ffc8271e352135ac3380341f4ec9646b 414 PRINTS PR00166 Aromatic amino acid permease signature 46 65 1.6E-97 T 29-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM354_RS23605 ffc8271e352135ac3380341f4ec9646b 414 PRINTS PR00166 Aromatic amino acid permease signature 327 345 1.6E-97 T 29-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM354_RS23605 ffc8271e352135ac3380341f4ec9646b 414 PRINTS PR00166 Aromatic amino acid permease signature 91 111 1.6E-97 T 29-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM354_RS23605 ffc8271e352135ac3380341f4ec9646b 414 PRINTS PR00166 Aromatic amino acid permease signature 155 175 1.6E-97 T 29-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM354_RS23605 ffc8271e352135ac3380341f4ec9646b 414 PRINTS PR00166 Aromatic amino acid permease signature 348 367 1.6E-97 T 29-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM354_RS23605 ffc8271e352135ac3380341f4ec9646b 414 PRINTS PR00166 Aromatic amino acid permease signature 193 215 1.6E-97 T 29-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM354_RS23605 ffc8271e352135ac3380341f4ec9646b 414 PRINTS PR00166 Aromatic amino acid permease signature 232 251 1.6E-97 T 29-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM354_RS23605 ffc8271e352135ac3380341f4ec9646b 414 PRINTS PR00166 Aromatic amino acid permease signature 293 312 1.6E-97 T 29-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM354_RS23605 ffc8271e352135ac3380341f4ec9646b 414 TIGRFAM TIGR00837 araaP: aromatic amino acid transport protein 16 395 5.6E-146 T 29-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM354_RS23605 ffc8271e352135ac3380341f4ec9646b 414 Pfam PF03222 Tryptophan/tyrosine permease family 11 401 2.3E-142 T 29-03-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 AM354_RS23605 ffc8271e352135ac3380341f4ec9646b 414 PIRSF PIRSF006060 318 412 5.5 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM354_RS23605 ffc8271e352135ac3380341f4ec9646b 414 PIRSF PIRSF006060 12 305 5.7E-9 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM354_RS03215 71603e4bc83c10b62152f38cd6cf853d 498 SUPERFAMILY SSF101960 128 495 1.16E-134 T 29-03-2018 AM354_RS03215 71603e4bc83c10b62152f38cd6cf853d 498 SUPERFAMILY SSF101960 41 86 1.16E-134 T 29-03-2018 AM354_RS03215 71603e4bc83c10b62152f38cd6cf853d 498 TIGRFAM TIGR01980 sufB: FeS assembly protein SufB 21 489 2.6E-193 T 29-03-2018 IPR010231 SUF system FeS cluster assembly, SufB GO:0016226 AM354_RS03215 71603e4bc83c10b62152f38cd6cf853d 498 Pfam PF01458 Uncharacterized protein family (UPF0051) 237 469 3.2E-67 T 29-03-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 AM354_RS13755 4c5fa709515743e6717317ee26bb22bd 158 SUPERFAMILY SSF55729 8 137 7.09E-27 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS13755 4c5fa709515743e6717317ee26bb22bd 158 Pfam PF13673 Acetyltransferase (GNAT) domain 54 137 9.3E-19 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS13755 4c5fa709515743e6717317ee26bb22bd 158 Gene3D G3DSA:3.40.630.30 7 150 2.1E-26 T 29-03-2018 AM354_RS00020 522e406e786f52e852adf012b1b81432 131 Gene3D G3DSA:1.20.120.550 1 125 2.9E-22 T 29-03-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain AM354_RS00020 522e406e786f52e852adf012b1b81432 131 SUPERFAMILY SSF161084 4 127 1.57E-29 T 29-03-2018 AM354_RS00020 522e406e786f52e852adf012b1b81432 131 Pfam PF01124 MAPEG family 3 119 1.4E-25 T 29-03-2018 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein AM354_RS06410 11a70a75a7c51b3b4c7fbe3e4051c996 135 Pfam PF03788 LrgA family 23 114 2.2E-29 T 29-03-2018 IPR005538 LrgA/CidA family GO:0016021 AM354_RS06410 11a70a75a7c51b3b4c7fbe3e4051c996 135 Hamap MF_01144 UPF0299 membrane protein YohJ [yohJ]. 4 123 23.3 T 29-03-2018 IPR022957 Uncharacterised protein family UPF0299 AM354_RS02345 3b646466ceb2e6bd2d99827558420650 133 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 3 125 6.0E-8 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AM354_RS02345 3b646466ceb2e6bd2d99827558420650 133 SUPERFAMILY SSF54593 2 131 1.03E-21 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS02345 3b646466ceb2e6bd2d99827558420650 133 Gene3D G3DSA:3.10.180.10 1 131 5.8E-20 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS24685 9876c4e55cb8a2bf9ff40d1e8bb95d28 257 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 98 118 - T 29-03-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 AM354_RS24685 9876c4e55cb8a2bf9ff40d1e8bb95d28 257 Gene3D G3DSA:1.10.12.10 215 257 2.5E-21 T 29-03-2018 IPR014748 Crontonase, C-terminal AM354_RS24685 9876c4e55cb8a2bf9ff40d1e8bb95d28 257 Gene3D G3DSA:3.90.226.10 5 214 5.4E-71 T 29-03-2018 AM354_RS24685 9876c4e55cb8a2bf9ff40d1e8bb95d28 257 SUPERFAMILY SSF52096 1 257 2.79E-84 T 29-03-2018 IPR029045 ClpP/crotonase-like domain AM354_RS24685 9876c4e55cb8a2bf9ff40d1e8bb95d28 257 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 256 1.6E-70 T 29-03-2018 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AM354_RS22735 3fb23f6a3634f5432ab3424b432f54aa 656 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 316 637 1.2E-130 T 29-03-2018 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal AM354_RS22735 3fb23f6a3634f5432ab3424b432f54aa 656 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 53 641 5.2E-283 T 29-03-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM354_RS22735 3fb23f6a3634f5432ab3424b432f54aa 656 Pfam PF01578 Cytochrome C assembly protein 89 296 3.6E-54 T 29-03-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 AM354_RS22735 3fb23f6a3634f5432ab3424b432f54aa 656 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 395 414 6.1E-60 T 29-03-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM354_RS22735 3fb23f6a3634f5432ab3424b432f54aa 656 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 190 205 6.1E-60 T 29-03-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM354_RS22735 3fb23f6a3634f5432ab3424b432f54aa 656 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 352 369 6.1E-60 T 29-03-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM354_RS22735 3fb23f6a3634f5432ab3424b432f54aa 656 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 113 136 6.1E-60 T 29-03-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM354_RS22735 3fb23f6a3634f5432ab3424b432f54aa 656 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 4 28 6.1E-60 T 29-03-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM354_RS22735 3fb23f6a3634f5432ab3424b432f54aa 656 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 314 329 6.1E-60 T 29-03-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM354_RS22735 3fb23f6a3634f5432ab3424b432f54aa 656 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 631 644 6.1E-60 T 29-03-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM354_RS22735 3fb23f6a3634f5432ab3424b432f54aa 656 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 1.5E-94 T 29-03-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM354_RS22735 3fb23f6a3634f5432ab3424b432f54aa 656 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 311 330 1.5E-94 T 29-03-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM354_RS22735 3fb23f6a3634f5432ab3424b432f54aa 656 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 275 295 1.5E-94 T 29-03-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM354_RS22735 3fb23f6a3634f5432ab3424b432f54aa 656 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 245 265 1.5E-94 T 29-03-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM354_RS22735 3fb23f6a3634f5432ab3424b432f54aa 656 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 211 237 1.5E-94 T 29-03-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM354_RS22735 3fb23f6a3634f5432ab3424b432f54aa 656 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 132 149 1.5E-94 T 29-03-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM354_RS22735 3fb23f6a3634f5432ab3424b432f54aa 656 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 160 182 1.5E-94 T 29-03-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM354_RS22735 3fb23f6a3634f5432ab3424b432f54aa 656 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 295 311 1.5E-94 T 29-03-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM354_RS13170 7c68bb16f73cfe084d87d26e192704cf 265 ProSitePatterns PS01229 Hypothetical cof family signature 2. 212 234 - T 29-03-2018 AM354_RS13170 7c68bb16f73cfe084d87d26e192704cf 265 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 231 1.3E-26 T 29-03-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 AM354_RS13170 7c68bb16f73cfe084d87d26e192704cf 265 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 4 259 1.6E-65 T 29-03-2018 IPR000150 Cof family GO:0016787 AM354_RS13170 7c68bb16f73cfe084d87d26e192704cf 265 ProSitePatterns PS01228 Hypothetical cof family signature 1. 4 15 - T 29-03-2018 AM354_RS13170 7c68bb16f73cfe084d87d26e192704cf 265 Gene3D G3DSA:3.40.50.1000 2 265 1.6E-34 T 29-03-2018 IPR023214 HAD-like domain AM354_RS13170 7c68bb16f73cfe084d87d26e192704cf 265 Pfam PF08282 haloacid dehalogenase-like hydrolase 5 260 6.5E-63 T 29-03-2018 IPR023214 HAD-like domain AM354_RS13170 7c68bb16f73cfe084d87d26e192704cf 265 SUPERFAMILY SSF56784 1 264 1.45E-69 T 29-03-2018 IPR023214 HAD-like domain AM354_RS18200 cc41f6a92af66c3b944ffc385fd01fba 180 Gene3D G3DSA:1.10.10.10 10 179 3.1E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS18200 cc41f6a92af66c3b944ffc385fd01fba 180 SMART SM00421 118 175 7.0E-7 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS18200 cc41f6a92af66c3b944ffc385fd01fba 180 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 121 135 1.1E-7 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS18200 cc41f6a92af66c3b944ffc385fd01fba 180 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 163 1.1E-7 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS18200 cc41f6a92af66c3b944ffc385fd01fba 180 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 135 151 1.1E-7 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS18200 cc41f6a92af66c3b944ffc385fd01fba 180 Pfam PF00196 Bacterial regulatory proteins, luxR family 120 166 7.9E-10 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS18200 cc41f6a92af66c3b944ffc385fd01fba 180 SUPERFAMILY SSF46894 116 177 4.08E-12 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS18360 a9572a067e8d9288041db37dbd4b1c7e 128 TIGRFAM TIGR03745 conj_TIGR03745: integrating conjugative element membrane protein, PFL_4702 family 25 127 4.5E-39 T 29-03-2018 IPR021356 Integrating conjugative element protein PFL4702 AM354_RS18360 a9572a067e8d9288041db37dbd4b1c7e 128 Gene3D G3DSA:1.20.210.10 10 127 4.9E-4 T 29-03-2018 IPR023616 Cytochrome c oxidase-like, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM354_RS18360 a9572a067e8d9288041db37dbd4b1c7e 128 Pfam PF11190 Protein of unknown function (DUF2976) 40 126 2.2E-33 T 29-03-2018 IPR021356 Integrating conjugative element protein PFL4702 AM354_RS06080 e87526e4620c754822f2181a809266aa 173 Pfam PF00419 Fimbrial protein 31 173 2.7E-17 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS06080 e87526e4620c754822f2181a809266aa 173 SUPERFAMILY SSF49401 29 173 4.77E-41 T 29-03-2018 IPR008966 Adhesion domain AM354_RS06080 e87526e4620c754822f2181a809266aa 173 Gene3D G3DSA:2.60.40.1090 28 173 8.5E-37 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS01020 3a9c9b050a2314ace063351892c20559 221 SUPERFAMILY SSF51569 1 215 1.15E-63 T 29-03-2018 AM354_RS01020 3a9c9b050a2314ace063351892c20559 221 ProSitePatterns PS00958 Transaldolase active site. 82 99 - T 29-03-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-71336 AM354_RS01020 3a9c9b050a2314ace063351892c20559 221 TIGRFAM TIGR00875 fsa_talC_mipB: fructose-6-phosphate aldolase 1 214 7.0E-84 T 29-03-2018 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 AM354_RS01020 3a9c9b050a2314ace063351892c20559 221 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 3 206 6.6E-43 T 29-03-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-71336 AM354_RS01020 3a9c9b050a2314ace063351892c20559 221 ProSitePatterns PS01054 Transaldolase signature 1. 24 32 - T 29-03-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-71336 AM354_RS01020 3a9c9b050a2314ace063351892c20559 221 Gene3D G3DSA:3.20.20.70 1 220 6.7E-57 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS13335 592c70dfd1f95a41546c338fd72c9262 243 Pfam PF00583 Acetyltransferase (GNAT) family 141 225 1.1E-11 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS13335 592c70dfd1f95a41546c338fd72c9262 243 TIGRFAM TIGR02382 wecD_rffC: TDP-D-fucosamine acetyltransferase 44 237 4.0E-85 T 29-03-2018 IPR012752 dTDP-fucosamine acetyltransferase WecD GO:0008080|GO:0009246 KEGG: 00071+2.3.1.21|MetaCyc: PWY-6111|MetaCyc: PWY-7315 AM354_RS13335 592c70dfd1f95a41546c338fd72c9262 243 Gene3D G3DSA:3.40.630.30 90 242 7.0E-25 T 29-03-2018 AM354_RS13335 592c70dfd1f95a41546c338fd72c9262 243 Hamap MF_02027 dTDP-fucosamine acetyltransferase [wecD]. 44 237 45.125 T 29-03-2018 IPR012752 dTDP-fucosamine acetyltransferase WecD GO:0008080|GO:0009246 KEGG: 00071+2.3.1.21|MetaCyc: PWY-6111|MetaCyc: PWY-7315 AM354_RS13335 592c70dfd1f95a41546c338fd72c9262 243 SUPERFAMILY SSF55729 47 233 2.92E-27 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS18940 273840bf8f17c9596209f68b9b17ff19 458 ProSitePatterns PS00218 Amino acid permeases signature. 43 73 - T 29-03-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 AM354_RS18940 273840bf8f17c9596209f68b9b17ff19 458 Pfam PF00324 Amino acid permease 18 450 8.0E-117 T 29-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 AM354_RS18940 273840bf8f17c9596209f68b9b17ff19 458 PIRSF PIRSF006060 1 453 9.8E-74 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM354_RS03090 ee3fa21d989c36a2349c8f660ae3e145 367 SUPERFAMILY SSF51395 1 365 4.97E-126 T 29-03-2018 AM354_RS03090 ee3fa21d989c36a2349c8f660ae3e145 367 Gene3D G3DSA:3.20.20.70 5 367 1.2E-128 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS03090 ee3fa21d989c36a2349c8f660ae3e145 367 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 5 344 2.2E-91 T 29-03-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 AM354_RS14975 84e95b492753843b887749dd355eda2f 399 Gene3D G3DSA:1.10.8.260 270 321 4.0E-13 T 29-03-2018 IPR023166 HI0933 insert-like domain AM354_RS14975 84e95b492753843b887749dd355eda2f 399 SUPERFAMILY SSF51905 337 394 1.33E-58 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS14975 84e95b492753843b887749dd355eda2f 399 SUPERFAMILY SSF51905 3 188 1.33E-58 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS14975 84e95b492753843b887749dd355eda2f 399 Pfam PF03486 HI0933-like protein 4 392 9.8E-155 T 29-03-2018 AM354_RS14975 84e95b492753843b887749dd355eda2f 399 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 6 392 1.3E-126 T 29-03-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like AM354_RS14975 84e95b492753843b887749dd355eda2f 399 Gene3D G3DSA:2.40.30.10 188 269 5.4E-24 T 29-03-2018 AM354_RS14975 84e95b492753843b887749dd355eda2f 399 Gene3D G3DSA:3.50.50.60 4 185 3.2E-19 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS14975 84e95b492753843b887749dd355eda2f 399 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 155 164 1.1E-8 T 29-03-2018 AM354_RS14975 84e95b492753843b887749dd355eda2f 399 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 1.1E-8 T 29-03-2018 AM354_RS14975 84e95b492753843b887749dd355eda2f 399 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 362 369 1.1E-8 T 29-03-2018 AM354_RS14975 84e95b492753843b887749dd355eda2f 399 SUPERFAMILY SSF160996 190 338 1.83E-43 T 29-03-2018 AM354_RS09960 26a7b50ad9abc515f78a7b56422dced0 461 SUPERFAMILY SSF53955 108 260 9.85E-41 T 29-03-2018 IPR023346 Lysozyme-like domain AM354_RS09960 26a7b50ad9abc515f78a7b56422dced0 461 Pfam PF01476 LysM domain 354 396 7.8E-13 T 29-03-2018 IPR018392 LysM domain AM354_RS09960 26a7b50ad9abc515f78a7b56422dced0 461 Pfam PF01476 LysM domain 408 451 3.2E-9 T 29-03-2018 IPR018392 LysM domain AM354_RS09960 26a7b50ad9abc515f78a7b56422dced0 461 Gene3D G3DSA:1.10.530.10 17 255 1.0E-32 T 29-03-2018 AM354_RS09960 26a7b50ad9abc515f78a7b56422dced0 461 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 130 158 - T 29-03-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 AM354_RS09960 26a7b50ad9abc515f78a7b56422dced0 461 SMART SM00257 353 397 2.1E-13 T 29-03-2018 IPR018392 LysM domain AM354_RS09960 26a7b50ad9abc515f78a7b56422dced0 461 SMART SM00257 407 452 2.3E-9 T 29-03-2018 IPR018392 LysM domain AM354_RS09960 26a7b50ad9abc515f78a7b56422dced0 461 Gene3D G3DSA:3.10.350.10 405 453 1.1E-14 T 29-03-2018 AM354_RS09960 26a7b50ad9abc515f78a7b56422dced0 461 SUPERFAMILY SSF54106 352 396 2.62E-10 T 29-03-2018 IPR018392 LysM domain AM354_RS09960 26a7b50ad9abc515f78a7b56422dced0 461 Pfam PF01464 Transglycosylase SLT domain 112 223 2.7E-28 T 29-03-2018 IPR008258 Transglycosylase SLT domain 1 AM354_RS09960 26a7b50ad9abc515f78a7b56422dced0 461 Gene3D G3DSA:3.10.350.10 348 404 5.0E-14 T 29-03-2018 AM354_RS09960 26a7b50ad9abc515f78a7b56422dced0 461 SUPERFAMILY SSF54106 406 452 6.02E-10 T 29-03-2018 IPR018392 LysM domain AM354_RS14815 b2a91dafa2fc08aebc20ab54b452053b 263 Pfam PF00563 EAL domain 27 243 3.5E-31 T 29-03-2018 IPR001633 EAL domain AM354_RS14815 b2a91dafa2fc08aebc20ab54b452053b 263 SUPERFAMILY SSF141868 24 250 4.18E-33 T 29-03-2018 IPR001633 EAL domain AM354_RS14815 b2a91dafa2fc08aebc20ab54b452053b 263 SMART SM00052 18 248 1.2E-12 T 29-03-2018 IPR001633 EAL domain AM354_RS14815 b2a91dafa2fc08aebc20ab54b452053b 263 Gene3D G3DSA:3.20.20.450 23 253 4.1E-33 T 29-03-2018 IPR001633 EAL domain AM354_RS02580 faa619ad00169ca4a8c651de578ede26 425 Pfam PF12919 TcdA/TcdB catalytic glycosyltransferase domain 155 329 9.2E-17 T 29-03-2018 IPR024770 TcdA/TcdB toxin, catalytic glycosyltransferase domain GO:0016757 AM354_RS02580 faa619ad00169ca4a8c651de578ede26 425 Pfam PF12919 TcdA/TcdB catalytic glycosyltransferase domain 21 74 2.9E-9 T 29-03-2018 IPR024770 TcdA/TcdB toxin, catalytic glycosyltransferase domain GO:0016757 AM354_RS02580 faa619ad00169ca4a8c651de578ede26 425 SUPERFAMILY SSF53448 16 424 5.62E-41 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS17380 13d765b818dd00f4515c23b994aa5704 210 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 15 199 5.1E-74 T 29-03-2018 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 AM354_RS17380 13d765b818dd00f4515c23b994aa5704 210 Gene3D G3DSA:3.90.79.10 1 209 1.0E-43 T 29-03-2018 AM354_RS17380 13d765b818dd00f4515c23b994aa5704 210 SUPERFAMILY SSF55811 9 207 5.28E-50 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 AM354_RS17380 13d765b818dd00f4515c23b994aa5704 210 ProSitePatterns PS00893 Nudix box signature. 97 118 - T 29-03-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AM354_RS17380 13d765b818dd00f4515c23b994aa5704 210 Pfam PF00293 NUDIX domain 59 179 7.9E-11 T 29-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AM354_RS21430 b8526cd1b4fea64e4dad77dea9076e9c 212 Pfam PF06992 Replication protein P 121 191 5.0E-11 T 29-03-2018 IPR009731 Replication P GO:0006270 AM354_RS05530 0c98638de7326640e0942e492818a1ec 382 Gene3D G3DSA:3.20.20.30 1 356 1.6E-93 T 29-03-2018 AM354_RS05530 0c98638de7326640e0942e492818a1ec 382 Hamap MF_01229 Alkanesulfonate monooxygenase [ssuD]. 4 380 70.553 T 29-03-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 AM354_RS05530 0c98638de7326640e0942e492818a1ec 382 Pfam PF00296 Luciferase-like monooxygenase 4 325 1.8E-85 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AM354_RS05530 0c98638de7326640e0942e492818a1ec 382 TIGRFAM TIGR03565 alk_sulf_monoox: alkanesulfonate monooxygenase, FMNH(2)-dependent 4 349 1.6E-191 T 29-03-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 AM354_RS05530 0c98638de7326640e0942e492818a1ec 382 SUPERFAMILY SSF51679 3 349 1.83E-97 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AM354_RS23185 224678b1c366189a70dbeb35341793df 485 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 6 475 17.567 T 29-03-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 AM354_RS23185 224678b1c366189a70dbeb35341793df 485 Pfam PF00361 Proton-conducting membrane transporter 122 420 1.8E-83 T 29-03-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23185 224678b1c366189a70dbeb35341793df 485 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 9 475 1.1E-134 T 29-03-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 AM354_RS25685 5932ee6e258de89a67ed0b79e9e15aeb 282 Pfam PF14305 TupA-like ATPgrasp 42 280 1.4E-48 T 29-03-2018 IPR029465 TupA-like ATPgrasp protein AM354_RS18195 1e33cefb749e9d8c0a4316d91c7e2b38 328 Gene3D G3DSA:2.60.40.1090 193 326 4.1E-11 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS18195 1e33cefb749e9d8c0a4316d91c7e2b38 328 Gene3D G3DSA:2.60.40.1090 25 192 1.2E-34 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS18195 1e33cefb749e9d8c0a4316d91c7e2b38 328 Pfam PF00419 Fimbrial protein 193 327 8.8E-11 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS18195 1e33cefb749e9d8c0a4316d91c7e2b38 328 SUPERFAMILY SSF49401 195 326 2.92E-12 T 29-03-2018 IPR008966 Adhesion domain AM354_RS17610 f44240a0cd78e1d511a90adf7539f118 101 SUPERFAMILY SSF46785 4 97 9.89E-25 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS17610 f44240a0cd78e1d511a90adf7539f118 101 Pfam PF03551 Transcriptional regulator PadR-like family 15 84 3.8E-19 T 29-03-2018 IPR005149 Transcription regulator PadR, N-terminal AM354_RS17610 f44240a0cd78e1d511a90adf7539f118 101 Gene3D G3DSA:1.10.10.10 1 94 8.8E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS22320 9ba5140bc2c4808a7b2076e58a91c9d3 169 SUPERFAMILY SSF51261 12 167 1.22E-55 T 29-03-2018 IPR011055 Duplicated hybrid motif AM354_RS22320 9ba5140bc2c4808a7b2076e58a91c9d3 169 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 23 143 3.3E-50 T 29-03-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 AM354_RS22320 9ba5140bc2c4808a7b2076e58a91c9d3 169 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 22 146 1.1E-48 T 29-03-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 AM354_RS22320 9ba5140bc2c4808a7b2076e58a91c9d3 169 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 85 97 - T 29-03-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 AM354_RS22320 9ba5140bc2c4808a7b2076e58a91c9d3 169 Gene3D G3DSA:2.70.70.10 9 169 1.1E-58 T 29-03-2018 AM354_RS16195 120f60a79618ad1b4146fcae9fcfbc1a 189 SUPERFAMILY SSF55821 8 185 6.71E-56 T 29-03-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain AM354_RS16195 120f60a79618ad1b4146fcae9fcfbc1a 189 Pfam PF01300 Telomere recombination 15 186 2.5E-43 T 29-03-2018 IPR006070 YrdC-like domain GO:0003725 AM354_RS16195 120f60a79618ad1b4146fcae9fcfbc1a 189 Gene3D G3DSA:3.90.870.10 2 187 9.5E-52 T 29-03-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain AM354_RS16195 120f60a79618ad1b4146fcae9fcfbc1a 189 Hamap MF_01852 Threonylcarbamoyl-AMP synthase [tsaC]. 6 187 41.329 T 29-03-2018 IPR023535 Threonylcarbamoyl-AMP synthase GO:0002949|GO:0005524 AM354_RS23250 e1ec747816685c392ea68050696c7875 461 Pfam PF00501 AMP-binding enzyme 10 360 8.4E-52 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM354_RS23250 e1ec747816685c392ea68050696c7875 461 Gene3D G3DSA:3.40.50.980 6 148 1.4E-22 T 29-03-2018 AM354_RS23250 e1ec747816685c392ea68050696c7875 461 ProSitePatterns PS00455 Putative AMP-binding domain signature. 143 154 - T 29-03-2018 IPR020845 AMP-binding, conserved site AM354_RS23250 e1ec747816685c392ea68050696c7875 461 Gene3D G3DSA:2.30.38.10 287 355 7.6E-8 T 29-03-2018 AM354_RS23250 e1ec747816685c392ea68050696c7875 461 Gene3D G3DSA:3.40.50.980 149 286 1.0E-28 T 29-03-2018 AM354_RS23250 e1ec747816685c392ea68050696c7875 461 SUPERFAMILY SSF56801 9 457 4.45E-95 T 29-03-2018 AM354_RS23250 e1ec747816685c392ea68050696c7875 461 Pfam PF13193 AMP-binding enzyme C-terminal domain 372 438 1.0E-5 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain AM354_RS23250 e1ec747816685c392ea68050696c7875 461 Gene3D G3DSA:3.30.300.30 356 460 4.5E-18 T 29-03-2018 AM354_RS23250 e1ec747816685c392ea68050696c7875 461 TIGRFAM TIGR01923 menE: O-succinylbenzoate-CoA ligase 30 450 7.2E-114 T 29-03-2018 IPR010192 2-succinylbenzoate--CoA ligase GO:0005524|GO:0008756|GO:0009234 KEGG: 00130+6.2.1.26|MetaCyc: PWY-5837 AM354_RS10190 8b140985de946c43f23fc3fe05135d92 253 Pfam PF04794 YdjC-like protein 5 241 1.5E-59 T 29-03-2018 IPR006879 Carbohydrate deacetylase YdjC-like AM354_RS10190 8b140985de946c43f23fc3fe05135d92 253 Gene3D G3DSA:3.20.20.370 1 253 1.9E-77 T 29-03-2018 AM354_RS10190 8b140985de946c43f23fc3fe05135d92 253 SUPERFAMILY SSF88713 1 253 1.11E-73 T 29-03-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AM354_RS10190 8b140985de946c43f23fc3fe05135d92 253 Hamap MF_01246 Chitooligosaccharide deacetylase [chbG]. 3 250 41.317 T 29-03-2018 IPR022948 Chitooligosaccharide deacetylase ChbG-like, bacteria GO:0000272|GO:0016811 AM354_RS10175 2768a45bc74c8d212c637b184080c8d1 354 Gene3D G3DSA:3.30.250.10 272 328 1.4E-25 T 29-03-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal AM354_RS10175 2768a45bc74c8d212c637b184080c8d1 354 Hamap MF_00268 Protein RecA [recA]. 7 331 50.79 T 29-03-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AM354_RS10175 2768a45bc74c8d212c637b184080c8d1 354 SMART SM00382 59 230 1.1E-8 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS10175 2768a45bc74c8d212c637b184080c8d1 354 PRINTS PR00142 RecA protein signature 212 240 3.4E-84 T 29-03-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AM354_RS10175 2768a45bc74c8d212c637b184080c8d1 354 PRINTS PR00142 RecA protein signature 299 316 3.4E-84 T 29-03-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AM354_RS10175 2768a45bc74c8d212c637b184080c8d1 354 PRINTS PR00142 RecA protein signature 129 158 3.4E-84 T 29-03-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AM354_RS10175 2768a45bc74c8d212c637b184080c8d1 354 PRINTS PR00142 RecA protein signature 167 196 3.4E-84 T 29-03-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AM354_RS10175 2768a45bc74c8d212c637b184080c8d1 354 PRINTS PR00142 RecA protein signature 245 274 3.4E-84 T 29-03-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AM354_RS10175 2768a45bc74c8d212c637b184080c8d1 354 PRINTS PR00142 RecA protein signature 95 124 3.4E-84 T 29-03-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AM354_RS10175 2768a45bc74c8d212c637b184080c8d1 354 SUPERFAMILY SSF54752 272 326 2.22E-20 T 29-03-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal AM354_RS10175 2768a45bc74c8d212c637b184080c8d1 354 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 6 326 2.6E-171 T 29-03-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AM354_RS10175 2768a45bc74c8d212c637b184080c8d1 354 Pfam PF00154 recA bacterial DNA recombination protein 9 270 4.4E-142 T 29-03-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AM354_RS10175 2768a45bc74c8d212c637b184080c8d1 354 Gene3D G3DSA:3.40.50.300 28 270 3.2E-46 T 29-03-2018 AM354_RS10175 2768a45bc74c8d212c637b184080c8d1 354 ProSitePatterns PS00321 recA signature. 215 223 - T 29-03-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 AM354_RS10175 2768a45bc74c8d212c637b184080c8d1 354 SUPERFAMILY SSF52540 5 269 2.6E-65 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS24955 de6d3f9e802e5b239846c99ef4271082 138 SUPERFAMILY SSF102546 1 133 1.23E-23 T 29-03-2018 IPR023750 RbsD-like domain GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 AM354_RS24955 de6d3f9e802e5b239846c99ef4271082 138 Gene3D G3DSA:3.40.1650.10 1 135 8.6E-24 T 29-03-2018 IPR023750 RbsD-like domain GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 AM354_RS24955 de6d3f9e802e5b239846c99ef4271082 138 Pfam PF05025 RbsD / FucU transport protein family 1 133 2.5E-23 T 29-03-2018 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 AM354_RS01400 1b61ff7a767daa46e83f400f1c9ea998 301 Gene3D G3DSA:3.40.50.1820 6 298 5.6E-47 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS01400 1b61ff7a767daa46e83f400f1c9ea998 301 Pfam PF00561 alpha/beta hydrolase fold 29 156 2.4E-18 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS01400 1b61ff7a767daa46e83f400f1c9ea998 301 SUPERFAMILY SSF53474 10 297 4.05E-62 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS24210 2475ed2120cfc62d69c810fd010dcb8c 96 SUPERFAMILY SSF81301 6 95 2.98E-17 T 29-03-2018 AM354_RS24210 2475ed2120cfc62d69c810fd010dcb8c 96 Gene3D G3DSA:3.30.460.10 4 96 1.9E-15 T 29-03-2018 AM354_RS24210 2475ed2120cfc62d69c810fd010dcb8c 96 Pfam PF01909 Nucleotidyltransferase domain 23 92 8.4E-7 T 29-03-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 AM354_RS01625 802892220d5070b12759a7944103a83b 351 Pfam PF01261 Xylose isomerase-like TIM barrel 29 279 2.2E-31 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM354_RS01625 802892220d5070b12759a7944103a83b 351 Gene3D G3DSA:3.20.20.150 9 346 2.3E-45 T 29-03-2018 AM354_RS01625 802892220d5070b12759a7944103a83b 351 Pfam PF07582 AP endonuclease family 2 C terminus 280 334 4.2E-20 T 29-03-2018 IPR011418 AP endonuclease, family 2, C-terminal AM354_RS01625 802892220d5070b12759a7944103a83b 351 SUPERFAMILY SSF51658 14 335 5.94E-56 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM354_RS00930 cd0f54bc653b8c60400728382832dbfd 301 Gene3D G3DSA:3.40.50.920 177 300 1.6E-21 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AM354_RS00930 cd0f54bc653b8c60400728382832dbfd 301 Pfam PF02779 Transketolase, pyrimidine binding domain 3 164 5.6E-25 T 29-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AM354_RS00930 cd0f54bc653b8c60400728382832dbfd 301 SUPERFAMILY SSF52922 172 297 2.22E-19 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AM354_RS00930 cd0f54bc653b8c60400728382832dbfd 301 Gene3D G3DSA:3.40.50.970 1 173 1.8E-33 T 29-03-2018 AM354_RS00930 cd0f54bc653b8c60400728382832dbfd 301 SUPERFAMILY SSF52518 2 166 2.01E-38 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS00930 cd0f54bc653b8c60400728382832dbfd 301 Pfam PF02780 Transketolase, C-terminal domain 178 293 7.6E-15 T 29-03-2018 IPR033248 Transketolase, C-terminal domain AM354_RS00930 cd0f54bc653b8c60400728382832dbfd 301 SMART SM00861 2 167 7.2E-33 T 29-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AM354_RS03210 9b986270d14bff43749aa33dc1f4a5a8 248 SMART SM00382 26 223 3.4E-8 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS03210 9b986270d14bff43749aa33dc1f4a5a8 248 TIGRFAM TIGR01978 sufC: FeS assembly ATPase SufC 2 244 9.3E-113 T 29-03-2018 IPR010230 FeS cluster assembly SUF system, ATPase SufC GO:0005524|GO:0006810 AM354_RS03210 9b986270d14bff43749aa33dc1f4a5a8 248 Pfam PF00005 ABC transporter 17 172 3.7E-21 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS03210 9b986270d14bff43749aa33dc1f4a5a8 248 Gene3D G3DSA:3.40.50.300 1 248 4.1E-45 T 29-03-2018 AM354_RS03210 9b986270d14bff43749aa33dc1f4a5a8 248 SUPERFAMILY SSF52540 2 231 2.61E-43 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS03210 9b986270d14bff43749aa33dc1f4a5a8 248 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS26065 04659a02b5bd7d05734665c8109d23f8 194 Pfam PF13302 Acetyltransferase (GNAT) domain 17 162 1.0E-17 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS26065 04659a02b5bd7d05734665c8109d23f8 194 SUPERFAMILY SSF55729 12 185 1.23E-40 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS26065 04659a02b5bd7d05734665c8109d23f8 194 Gene3D G3DSA:3.40.630.30 1 194 6.6E-29 T 29-03-2018 AM354_RS21400 b854f41a8abe82d872dcfd4eb74c2674 304 Gene3D G3DSA:3.90.320.10 5 265 6.2E-35 T 29-03-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal GO:0003677|GO:0004518 AM354_RS21400 b854f41a8abe82d872dcfd4eb74c2674 304 Pfam PF09588 YqaJ-like viral recombinase domain 10 148 1.4E-16 T 29-03-2018 IPR019080 YqaJ viral recombinase AM354_RS21400 b854f41a8abe82d872dcfd4eb74c2674 304 TIGRFAM TIGR03033 phage_rel_nuc: putative phage-type endonuclease 10 159 7.7E-22 T 29-03-2018 IPR017482 Putative phage-type endonuclease AM354_RS21400 b854f41a8abe82d872dcfd4eb74c2674 304 SUPERFAMILY SSF52980 10 195 2.31E-27 T 29-03-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AM354_RS25940 57a5cfe6a0968c5513c59fa5c57820fd 238 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 40 194 1.5E-42 T 29-03-2018 IPR003730 Multi-copper polyphenol oxidoreductase AM354_RS25940 57a5cfe6a0968c5513c59fa5c57820fd 238 Gene3D G3DSA:3.60.140.10 30 228 2.0E-57 T 29-03-2018 AM354_RS25940 57a5cfe6a0968c5513c59fa5c57820fd 238 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 39 212 6.5E-42 T 29-03-2018 IPR003730 Multi-copper polyphenol oxidoreductase AM354_RS25940 57a5cfe6a0968c5513c59fa5c57820fd 238 SUPERFAMILY SSF64438 32 213 4.58E-47 T 29-03-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic AM354_RS22520 6052609ab0f375e065a94c346aad4d4a 395 Pfam PF07670 Nucleoside recognition 92 190 1.2E-7 T 29-03-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 AM354_RS22520 6052609ab0f375e065a94c346aad4d4a 395 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 9 82 4.2E-18 T 29-03-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 AM354_RS22520 6052609ab0f375e065a94c346aad4d4a 395 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 193 392 4.5E-60 T 29-03-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 AM354_RS18305 68801f653be66757775035d0657eb760 252 Gene3D G3DSA:1.20.5.170 47 80 0.024 T 29-03-2018 AM354_RS18305 68801f653be66757775035d0657eb760 252 Gene3D G3DSA:1.20.5.10 113 145 0.1 T 29-03-2018 AM354_RS18305 68801f653be66757775035d0657eb760 252 Gene3D G3DSA:1.20.5.10 81 107 0.059 T 29-03-2018 AM354_RS06870 0ad486ffded609fb80cacacd7cc97226 618 Gene3D G3DSA:1.10.1370.10 336 566 5.8E-27 T 29-03-2018 AM354_RS06870 0ad486ffded609fb80cacacd7cc97226 618 Gene3D G3DSA:1.10.1370.10 35 322 9.0E-25 T 29-03-2018 AM354_RS06870 0ad486ffded609fb80cacacd7cc97226 618 Pfam PF01432 Peptidase family M3 149 552 5.5E-22 T 29-03-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 AM354_RS06870 0ad486ffded609fb80cacacd7cc97226 618 SUPERFAMILY SSF55486 44 552 3.79E-70 T 29-03-2018 AM354_RS24505 5cd0fd43f1bcb9e5b6bebc3b32e08c03 174 SUPERFAMILY SSF49401 29 174 1.69E-41 T 29-03-2018 IPR008966 Adhesion domain AM354_RS24505 5cd0fd43f1bcb9e5b6bebc3b32e08c03 174 Gene3D G3DSA:2.60.40.1090 28 174 2.3E-36 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS24505 5cd0fd43f1bcb9e5b6bebc3b32e08c03 174 Pfam PF00419 Fimbrial protein 31 174 1.1E-16 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS15865 363352d7a5e14be5cec0d705f31207ee 326 PIRSF PIRSF005211 1 324 7.5E-102 T 29-03-2018 IPR012020 AB hydrolase 4 family AM354_RS15865 363352d7a5e14be5cec0d705f31207ee 326 SUPERFAMILY SSF53474 31 299 8.25E-39 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS15865 363352d7a5e14be5cec0d705f31207ee 326 ProSitePatterns PS01133 Uncharacterized protein family UPF0017 signature. 226 267 - T 29-03-2018 IPR000952 AB hydrolase 4, conserved site AM354_RS15865 363352d7a5e14be5cec0d705f31207ee 326 Pfam PF00561 alpha/beta hydrolase fold 63 298 1.4E-17 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM354_RS15865 363352d7a5e14be5cec0d705f31207ee 326 Gene3D G3DSA:3.40.50.1820 23 321 6.6E-27 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS24975 4eb778f25f37b4777235733be5b1f82d 291 Gene3D G3DSA:1.10.10.60 160 232 5.8E-10 T 29-03-2018 AM354_RS24975 4eb778f25f37b4777235733be5b1f82d 291 SUPERFAMILY SSF51182 16 92 1.4E-5 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS24975 4eb778f25f37b4777235733be5b1f82d 291 SUPERFAMILY SSF46689 229 279 5.38E-11 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS24975 4eb778f25f37b4777235733be5b1f82d 291 SUPERFAMILY SSF46689 177 224 1.43E-6 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS24975 4eb778f25f37b4777235733be5b1f82d 291 Pfam PF12833 Helix-turn-helix domain 199 278 2.1E-19 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS24975 4eb778f25f37b4777235733be5b1f82d 291 Pfam PF12852 Cupin 2 162 3.5E-24 T 29-03-2018 IPR032783 AraC-type transcription regulator, ligand-binding domain AM354_RS24975 4eb778f25f37b4777235733be5b1f82d 291 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 230 272 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM354_RS24975 4eb778f25f37b4777235733be5b1f82d 291 SMART SM00342 193 276 2.5E-28 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM354_RS24975 4eb778f25f37b4777235733be5b1f82d 291 Gene3D G3DSA:1.10.10.60 233 280 1.9E-14 T 29-03-2018 AM354_RS24975 4eb778f25f37b4777235733be5b1f82d 291 Gene3D G3DSA:2.60.120.280 11 159 7.5E-16 T 29-03-2018 AM354_RS19820 9d601ed2a9365c1fa6f94f402e9d07d1 353 Gene3D G3DSA:2.60.40.1090 204 353 5.5E-20 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS19820 9d601ed2a9365c1fa6f94f402e9d07d1 353 Pfam PF00419 Fimbrial protein 207 353 4.1E-19 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS19820 9d601ed2a9365c1fa6f94f402e9d07d1 353 SUPERFAMILY SSF49401 215 350 2.04E-14 T 29-03-2018 IPR008966 Adhesion domain AM354_RS20005 c9d3e1c77799196ac547c856b81dc81e 192 Pfam PF07963 Prokaryotic N-terminal methylation motif 5 27 2.9E-5 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site AM354_RS20005 c9d3e1c77799196ac547c856b81dc81e 192 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 28 4.0E-5 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site AM354_RS20005 c9d3e1c77799196ac547c856b81dc81e 192 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 6 26 - T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site AM354_RS20005 c9d3e1c77799196ac547c856b81dc81e 192 PIRSF PIRSF004525 1 191 6.3E-50 T 29-03-2018 IPR016419 Prepilin peptidase-dependent protein B, predicted AM354_RS22625 122b52ec2eb40a72969beaeb05462ac7 668 TIGRFAM TIGR03938 deacetyl_PgaB: poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB 46 662 2.3E-276 T 29-03-2018 IPR023854 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB GO:0016810|GO:0042710 AM354_RS22625 122b52ec2eb40a72969beaeb05462ac7 668 Gene3D G3DSA:3.20.20.370 66 487 3.2E-47 T 29-03-2018 AM354_RS22625 122b52ec2eb40a72969beaeb05462ac7 668 Pfam PF01522 Polysaccharide deacetylase 101 267 2.4E-29 T 29-03-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 AM354_RS22625 122b52ec2eb40a72969beaeb05462ac7 668 SUPERFAMILY SSF88713 221 316 3.34E-37 T 29-03-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AM354_RS22625 122b52ec2eb40a72969beaeb05462ac7 668 SUPERFAMILY SSF88713 63 193 3.34E-37 T 29-03-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AM354_RS22625 122b52ec2eb40a72969beaeb05462ac7 668 Pfam PF14883 Hypothetical glycosyl hydrolase family 13 315 642 9.2E-151 T 29-03-2018 IPR032772 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, C-terminal AM354_RS19905 e53df1b998d2375ad93fa2ee3bf90530 294 SUPERFAMILY SSF56281 26 248 7.14E-42 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS19905 e53df1b998d2375ad93fa2ee3bf90530 294 SMART SM00849 41 227 1.9E-21 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS19905 e53df1b998d2375ad93fa2ee3bf90530 294 Pfam PF00753 Metallo-beta-lactamase superfamily 40 227 3.8E-9 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS19905 e53df1b998d2375ad93fa2ee3bf90530 294 Gene3D G3DSA:3.60.15.10 17 253 9.8E-27 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS17320 566835b443fe2d3cae744b03ecab4608 91 Pfam PF04380 Membrane fusogenic activity 1 77 1.3E-29 T 29-03-2018 IPR007475 Membrane fusogenic activity AM354_RS16530 da71f238f34e5f0d2ca9e1d2caa180a7 117 Pfam PF04237 YjbR 12 102 1.1E-17 T 29-03-2018 IPR007351 Uncharacterised protein YjbR AM354_RS16530 da71f238f34e5f0d2ca9e1d2caa180a7 117 SUPERFAMILY SSF142906 1 115 1.11E-33 T 29-03-2018 AM354_RS11780 7cf77ab817ec184569a2c1e59fa166fc 304 Gene3D G3DSA:3.40.190.10 93 179 1.8E-17 T 29-03-2018 AM354_RS11780 7cf77ab817ec184569a2c1e59fa166fc 304 Pfam PF03466 LysR substrate binding domain 92 297 3.5E-48 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS11780 7cf77ab817ec184569a2c1e59fa166fc 304 Gene3D G3DSA:1.10.10.10 7 88 1.6E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS11780 7cf77ab817ec184569a2c1e59fa166fc 304 Gene3D G3DSA:3.40.190.10 180 269 1.1E-26 T 29-03-2018 AM354_RS11780 7cf77ab817ec184569a2c1e59fa166fc 304 SUPERFAMILY SSF46785 9 116 1.25E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS11780 7cf77ab817ec184569a2c1e59fa166fc 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 8.6E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS11780 7cf77ab817ec184569a2c1e59fa166fc 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 8.6E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS11780 7cf77ab817ec184569a2c1e59fa166fc 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 8.6E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS11780 7cf77ab817ec184569a2c1e59fa166fc 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 8.5E-18 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS11780 7cf77ab817ec184569a2c1e59fa166fc 304 SUPERFAMILY SSF53850 94 301 2.17E-48 T 29-03-2018 AM354_RS20070 a65d4400057883ad5a1eb41acfaed81c 268 Gene3D G3DSA:3.40.50.720 2 266 8.5E-54 T 29-03-2018 AM354_RS20070 a65d4400057883ad5a1eb41acfaed81c 268 Pfam PF00899 ThiF family 23 262 3.8E-37 T 29-03-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 AM354_RS20070 a65d4400057883ad5a1eb41acfaed81c 268 SUPERFAMILY SSF69572 6 259 3.92E-64 T 29-03-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 AM354_RS00910 8eadb673e1f86b63f68a0107d3265318 197 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 1 196 48.169 T 29-03-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 AM354_RS00910 8eadb673e1f86b63f68a0107d3265318 197 SUPERFAMILY SSF142695 3 173 2.48E-66 T 29-03-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 AM354_RS00910 8eadb673e1f86b63f68a0107d3265318 197 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 5 194 3.1E-92 T 29-03-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 AM354_RS00910 8eadb673e1f86b63f68a0107d3265318 197 Pfam PF00925 GTP cyclohydrolase II 5 170 1.3E-67 T 29-03-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 AM354_RS02010 c6a904b3f4ff6080c7a3212ecd07d9bc 427 Pfam PF05977 Transmembrane secretion effector 16 411 4.7E-29 T 29-03-2018 IPR010290 Transmembrane secretion effector AM354_RS02010 c6a904b3f4ff6080c7a3212ecd07d9bc 427 SUPERFAMILY SSF103473 18 403 9.29E-41 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS02010 c6a904b3f4ff6080c7a3212ecd07d9bc 427 Gene3D G3DSA:1.20.1250.20 9 211 1.7E-24 T 29-03-2018 AM354_RS02010 c6a904b3f4ff6080c7a3212ecd07d9bc 427 Gene3D G3DSA:1.20.1250.20 219 415 2.6E-13 T 29-03-2018 AM354_RS10885 27740668177aafad265d8b1ecafa65a1 637 PRINTS PR00301 70kDa heat shock protein signature 138 158 4.9E-78 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM354_RS10885 27740668177aafad265d8b1ecafa65a1 637 PRINTS PR00301 70kDa heat shock protein signature 198 208 4.9E-78 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM354_RS10885 27740668177aafad265d8b1ecafa65a1 637 PRINTS PR00301 70kDa heat shock protein signature 469 485 4.9E-78 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM354_RS10885 27740668177aafad265d8b1ecafa65a1 637 PRINTS PR00301 70kDa heat shock protein signature 54 62 4.9E-78 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM354_RS10885 27740668177aafad265d8b1ecafa65a1 637 PRINTS PR00301 70kDa heat shock protein signature 31 43 4.9E-78 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM354_RS10885 27740668177aafad265d8b1ecafa65a1 637 PRINTS PR00301 70kDa heat shock protein signature 334 350 4.9E-78 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM354_RS10885 27740668177aafad265d8b1ecafa65a1 637 PRINTS PR00301 70kDa heat shock protein signature 365 385 4.9E-78 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM354_RS10885 27740668177aafad265d8b1ecafa65a1 637 PRINTS PR00301 70kDa heat shock protein signature 3 16 4.9E-78 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM354_RS10885 27740668177aafad265d8b1ecafa65a1 637 PRINTS PR00301 70kDa heat shock protein signature 388 407 4.9E-78 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM354_RS10885 27740668177aafad265d8b1ecafa65a1 637 SUPERFAMILY SSF53067 187 382 9.72E-68 T 29-03-2018 AM354_RS10885 27740668177aafad265d8b1ecafa65a1 637 Gene3D G3DSA:1.20.1270.10 532 617 4.4E-20 T 29-03-2018 IPR029048 Heat shock protein 70kD, C-terminal domain AM354_RS10885 27740668177aafad265d8b1ecafa65a1 637 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 337 351 - T 29-03-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AM354_RS10885 27740668177aafad265d8b1ecafa65a1 637 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 633 36.886 T 29-03-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613 AM354_RS10885 27740668177aafad265d8b1ecafa65a1 637 Gene3D G3DSA:3.30.420.40 1 196 7.0E-81 T 29-03-2018 AM354_RS10885 27740668177aafad265d8b1ecafa65a1 637 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 192 205 - T 29-03-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AM354_RS10885 27740668177aafad265d8b1ecafa65a1 637 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 601 2.3E-291 T 29-03-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613 AM354_RS10885 27740668177aafad265d8b1ecafa65a1 637 Pfam PF00012 Hsp70 protein 4 602 1.2E-265 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM354_RS10885 27740668177aafad265d8b1ecafa65a1 637 SUPERFAMILY SSF100920 384 540 4.32E-60 T 29-03-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain Reactome: R-HSA-3371453 AM354_RS10885 27740668177aafad265d8b1ecafa65a1 637 SUPERFAMILY SSF100934 507 608 1.29E-16 T 29-03-2018 IPR029048 Heat shock protein 70kD, C-terminal domain AM354_RS10885 27740668177aafad265d8b1ecafa65a1 637 Gene3D G3DSA:3.30.420.40 197 366 1.1E-45 T 29-03-2018 AM354_RS10885 27740668177aafad265d8b1ecafa65a1 637 SUPERFAMILY SSF53067 4 183 5.94E-66 T 29-03-2018 AM354_RS10885 27740668177aafad265d8b1ecafa65a1 637 Gene3D G3DSA:2.60.34.10 390 531 1.7E-62 T 29-03-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain Reactome: R-HSA-3371453 AM354_RS10885 27740668177aafad265d8b1ecafa65a1 637 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 29-03-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AM354_RS22980 4e564bb3bffa5922e21a6b2041915562 166 Pfam PF02674 Colicin V production protein 4 142 5.9E-37 T 29-03-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 AM354_RS06885 e78edf5f3f7f100fab1dffa6377518ec 474 Gene3D G3DSA:1.20.1250.20 258 473 1.9E-16 T 29-03-2018 AM354_RS06885 e78edf5f3f7f100fab1dffa6377518ec 474 Pfam PF07690 Major Facilitator Superfamily 18 418 7.9E-40 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS06885 e78edf5f3f7f100fab1dffa6377518ec 474 Gene3D G3DSA:1.20.1250.20 6 204 4.4E-29 T 29-03-2018 AM354_RS06885 e78edf5f3f7f100fab1dffa6377518ec 474 SUPERFAMILY SSF103473 254 466 4.32E-56 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS06885 e78edf5f3f7f100fab1dffa6377518ec 474 SUPERFAMILY SSF103473 9 203 4.32E-56 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS25425 009adf758879bdab11ad336828a27b9a 148 Pfam PF02050 Flagellar FliJ protein 19 141 2.5E-37 T 29-03-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 AM354_RS25425 009adf758879bdab11ad336828a27b9a 148 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 5 144 1.5E-32 T 29-03-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 AM354_RS25425 009adf758879bdab11ad336828a27b9a 148 PRINTS PR01004 Flagellar FliJ protein signature 4 26 4.9E-40 T 29-03-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 AM354_RS25425 009adf758879bdab11ad336828a27b9a 148 PRINTS PR01004 Flagellar FliJ protein signature 126 146 4.9E-40 T 29-03-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 AM354_RS25425 009adf758879bdab11ad336828a27b9a 148 PRINTS PR01004 Flagellar FliJ protein signature 86 107 4.9E-40 T 29-03-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 AM354_RS25425 009adf758879bdab11ad336828a27b9a 148 PRINTS PR01004 Flagellar FliJ protein signature 27 43 4.9E-40 T 29-03-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 AM354_RS25425 009adf758879bdab11ad336828a27b9a 148 PRINTS PR01004 Flagellar FliJ protein signature 44 61 4.9E-40 T 29-03-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 AM354_RS25425 009adf758879bdab11ad336828a27b9a 148 PRINTS PR01004 Flagellar FliJ protein signature 63 84 4.9E-40 T 29-03-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 AM354_RS25425 009adf758879bdab11ad336828a27b9a 148 PRINTS PR01004 Flagellar FliJ protein signature 108 126 4.9E-40 T 29-03-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 AM354_RS25425 009adf758879bdab11ad336828a27b9a 148 PIRSF PIRSF019404 1 148 2.7E-54 T 29-03-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 AM354_RS25105 fc64332bea0733d79a76cb8fb7e5f922 343 TIGRFAM TIGR03363 VI_chp_8: type VI secretion-associated protein, ImpA family 4 335 2.5E-73 T 29-03-2018 IPR017740 Type VI secretion system-associated, ImpA AM354_RS25105 fc64332bea0733d79a76cb8fb7e5f922 343 Pfam PF06812 ImpA, N-terminal, type VI secretion system 9 132 1.5E-39 T 29-03-2018 IPR010657 ImpA, N-terminal AM354_RS18670 a33c3c846bfa1c345428d909f8c34b5b 67 Gene3D G3DSA:1.20.5.340 5 67 3.3E-4 T 29-03-2018 AM354_RS04875 f14af77f4e9827fc3e719de69f933832 95 Gene3D G3DSA:3.30.70.100 1 93 1.4E-21 T 29-03-2018 AM354_RS04875 f14af77f4e9827fc3e719de69f933832 95 SUPERFAMILY SSF54909 3 83 1.53E-26 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel AM354_RS04875 f14af77f4e9827fc3e719de69f933832 95 Pfam PF03992 Antibiotic biosynthesis monooxygenase 3 77 1.2E-18 T 29-03-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain AM354_RS25235 bdbae023b6082a92d8794df733683900 166 SMART SM00260 14 151 4.8E-45 T 29-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 AM354_RS25235 bdbae023b6082a92d8794df733683900 166 SUPERFAMILY SSF50341 17 157 6.93E-40 T 29-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 AM354_RS25235 bdbae023b6082a92d8794df733683900 166 Gene3D G3DSA:2.40.50.180 35 99 3.8E-20 T 29-03-2018 AM354_RS25235 bdbae023b6082a92d8794df733683900 166 Pfam PF01584 CheW-like domain 18 154 1.6E-37 T 29-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 AM354_RS25235 bdbae023b6082a92d8794df733683900 166 Gene3D G3DSA:2.30.30.40 100 145 2.6E-17 T 29-03-2018 AM354_RS13125 de5d729bf6e559d13b8b24d8c249c2ed 219 Pfam PF02592 Putative vitamin uptake transporter 43 199 1.8E-34 T 29-03-2018 IPR003744 Queuosine precursor transporter AM354_RS13125 de5d729bf6e559d13b8b24d8c249c2ed 219 TIGRFAM TIGR00697 TIGR00697: conserved hypothetical integral membrane protein 12 205 1.6E-61 T 29-03-2018 IPR003744 Queuosine precursor transporter AM354_RS11240 f6c8d60171de7800203929b5e36b4f9d 264 TIGRFAM TIGR02311 HpaI: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 4 252 1.2E-133 T 29-03-2018 IPR012689 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase GO:0010124|GO:0018802 KEGG: 00350+4.1.2.52 AM354_RS11240 f6c8d60171de7800203929b5e36b4f9d 264 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 16 242 1.2E-66 T 29-03-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 AM354_RS11240 f6c8d60171de7800203929b5e36b4f9d 264 Gene3D G3DSA:3.20.20.60 1 260 2.4E-54 T 29-03-2018 AM354_RS11240 f6c8d60171de7800203929b5e36b4f9d 264 SUPERFAMILY SSF51621 1 252 3.45E-86 T 29-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AM354_RS09010 889e9ffdf9158563f30219025e661ae9 430 SUPERFAMILY SSF111352 29 409 6.8E-126 T 29-03-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 AM354_RS09010 889e9ffdf9158563f30219025e661ae9 430 TIGRFAM TIGR00836 amt: ammonium transporter 33 428 2.7E-134 T 29-03-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 AM354_RS09010 889e9ffdf9158563f30219025e661ae9 430 Pfam PF00909 Ammonium Transporter Family 35 428 1.0E-122 T 29-03-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 AM354_RS09010 889e9ffdf9158563f30219025e661ae9 430 ProSitePatterns PS01219 Ammonium transporters signature. 184 209 - T 29-03-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 AM354_RS09010 889e9ffdf9158563f30219025e661ae9 430 Gene3D G3DSA:1.10.3430.10 25 409 5.6E-128 T 29-03-2018 AM354_RS06075 6af02fbadf722e2348b90c359bfa08dc 178 Pfam PF00419 Fimbrial protein 34 136 8.6E-6 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS06075 6af02fbadf722e2348b90c359bfa08dc 178 Gene3D G3DSA:2.60.40.1090 31 177 2.5E-20 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS06075 6af02fbadf722e2348b90c359bfa08dc 178 SUPERFAMILY SSF49401 32 177 3.43E-31 T 29-03-2018 IPR008966 Adhesion domain AM354_RS04375 fd5080c450baa765aea2fd785d19afdc 509 Pfam PF00916 Sulfate permease family 162 352 7.7E-29 T 29-03-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 AM354_RS04375 fd5080c450baa765aea2fd785d19afdc 509 SUPERFAMILY SSF52091 391 474 9.81E-15 T 29-03-2018 IPR002645 STAS domain AM354_RS04375 fd5080c450baa765aea2fd785d19afdc 509 Gene3D G3DSA:3.30.750.24 379 489 2.1E-16 T 29-03-2018 IPR002645 STAS domain AM354_RS04375 fd5080c450baa765aea2fd785d19afdc 509 Pfam PF01740 STAS domain 390 479 3.5E-9 T 29-03-2018 IPR002645 STAS domain AM354_RS13010 c182da27c035f4c5eac2db23dc9e86da 395 Pfam PF00155 Aminotransferase class I and II 52 391 6.9E-36 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM354_RS13010 c182da27c035f4c5eac2db23dc9e86da 395 SUPERFAMILY SSF53383 5 393 6.54E-99 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS13010 c182da27c035f4c5eac2db23dc9e86da 395 Gene3D G3DSA:3.40.640.10 49 301 7.2E-49 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS13010 c182da27c035f4c5eac2db23dc9e86da 395 Gene3D G3DSA:3.90.1150.10 302 395 1.2E-23 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS16330 721a24e3e84818833b56d305634cd7a5 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 94 269 8.0E-10 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS16330 721a24e3e84818833b56d305634cd7a5 281 Gene3D G3DSA:1.10.3720.10 8 281 2.6E-34 T 29-03-2018 AM354_RS16330 721a24e3e84818833b56d305634cd7a5 281 SUPERFAMILY SSF161098 5 275 1.03E-41 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS03380 1fca5457f9efcccc4a300a0c49dda1e6 98 PRINTS PR01727 Prokaryotic integration host factor signature 42 57 3.1E-17 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM354_RS03380 1fca5457f9efcccc4a300a0c49dda1e6 98 PRINTS PR01727 Prokaryotic integration host factor signature 76 90 3.1E-17 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM354_RS03380 1fca5457f9efcccc4a300a0c49dda1e6 98 PRINTS PR01727 Prokaryotic integration host factor signature 60 73 3.1E-17 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM354_RS03380 1fca5457f9efcccc4a300a0c49dda1e6 98 TIGRFAM TIGR00987 himA: integration host factor, alpha subunit 2 97 3.5E-54 T 29-03-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 AM354_RS03380 1fca5457f9efcccc4a300a0c49dda1e6 98 SUPERFAMILY SSF47729 3 93 1.62E-31 T 29-03-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 AM354_RS03380 1fca5457f9efcccc4a300a0c49dda1e6 98 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 48 67 - T 29-03-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 AM354_RS03380 1fca5457f9efcccc4a300a0c49dda1e6 98 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 1 97 31.102 T 29-03-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 AM354_RS03380 1fca5457f9efcccc4a300a0c49dda1e6 98 SMART SM00411 3 92 2.2E-42 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM354_RS03380 1fca5457f9efcccc4a300a0c49dda1e6 98 Pfam PF00216 Bacterial DNA-binding protein 3 91 9.9E-31 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM354_RS03380 1fca5457f9efcccc4a300a0c49dda1e6 98 Gene3D G3DSA:4.10.520.10 1 98 4.7E-33 T 29-03-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 AM354_RS00970 ad33adfaa7c7b6bf0c64517403c15798 100 Hamap MF_01948 Lipopolysaccharide assembly protein A [lapA]. 1 94 22.098 T 29-03-2018 IPR032906 Lipopolysaccharide assembly protein A GO:0005886|GO:0008653 AM354_RS00970 ad33adfaa7c7b6bf0c64517403c15798 100 Pfam PF06305 Lipopolysaccharide assembly protein A domain 24 86 1.7E-20 T 29-03-2018 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 AM354_RS14575 4e157925b32bbe6610fb7aebe9aaec79 176 Gene3D G3DSA:3.60.20.10 2 172 1.4E-30 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AM354_RS14575 4e157925b32bbe6610fb7aebe9aaec79 176 Pfam PF00227 Proteasome subunit 2 167 8.4E-22 T 29-03-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-446652|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8941858|Reactome: R-HSA-8951664|Reactome: R-HSA-983168 AM354_RS14575 4e157925b32bbe6610fb7aebe9aaec79 176 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 2 172 8.2E-87 T 29-03-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 AM354_RS14575 4e157925b32bbe6610fb7aebe9aaec79 176 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 1 172 41.922 T 29-03-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 AM354_RS14575 4e157925b32bbe6610fb7aebe9aaec79 176 PIRSF PIRSF039093 1 175 4.2E-89 T 29-03-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 AM354_RS14575 4e157925b32bbe6610fb7aebe9aaec79 176 SUPERFAMILY SSF56235 2 172 2.04E-58 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AM354_RS10495 1b99aa584b34d96d7ffba7c4ffa25f51 347 Gene3D G3DSA:3.20.20.70 8 341 5.9E-81 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS10495 1b99aa584b34d96d7ffba7c4ffa25f51 347 TIGRFAM TIGR01305 GMP_reduct_1: guanosine monophosphate reductase 2 344 3.6E-200 T 29-03-2018 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 AM354_RS10495 1b99aa584b34d96d7ffba7c4ffa25f51 347 SMART SM01240 7 344 4.2E-138 T 29-03-2018 AM354_RS10495 1b99aa584b34d96d7ffba7c4ffa25f51 347 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 176 188 - T 29-03-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 AM354_RS10495 1b99aa584b34d96d7ffba7c4ffa25f51 347 SUPERFAMILY SSF51412 6 335 5.89E-99 T 29-03-2018 AM354_RS10495 1b99aa584b34d96d7ffba7c4ffa25f51 347 Hamap MF_00596 GMP reductase [guaC]. 1 345 55.75 T 29-03-2018 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 AM354_RS10495 1b99aa584b34d96d7ffba7c4ffa25f51 347 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 9 338 3.1E-78 T 29-03-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 AM354_RS10495 1b99aa584b34d96d7ffba7c4ffa25f51 347 PIRSF PIRSF000235 1 347 2.2E-200 T 29-03-2018 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 AM354_RS25280 3417010a946d3f9cf32bd8695c12e6a1 134 Pfam PF06366 Flagellar protein FlhE 29 133 2.3E-37 T 29-03-2018 IPR009420 Flagellar protein FlhE AM354_RS15880 1b0472674110574f71eb7d5d30e42233 331 Gene3D G3DSA:3.40.190.10 124 326 1.5E-39 T 29-03-2018 AM354_RS15880 1b0472674110574f71eb7d5d30e42233 331 SMART SM00062 27 242 7.9E-25 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM354_RS15880 1b0472674110574f71eb7d5d30e42233 331 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 27 235 3.7E-22 T 29-03-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 AM354_RS15880 1b0472674110574f71eb7d5d30e42233 331 SUPERFAMILY SSF53850 37 309 2.29E-46 T 29-03-2018 AM354_RS15880 1b0472674110574f71eb7d5d30e42233 331 TIGRFAM TIGR01729 taurine_ABC_bnd: taurine ABC transporter, periplasmic binding protein 28 323 4.7E-136 T 29-03-2018 IPR010068 Taurine ABC transporter, substrate-binding protein TauA GO:0015734|GO:0042597 AM354_RS15880 1b0472674110574f71eb7d5d30e42233 331 Gene3D G3DSA:3.40.190.10 23 123 1.3E-9 T 29-03-2018 AM354_RS12670 4cbded4de7553ed4ffeaab5fd19580f8 255 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 93 124 1.4E-7 T 29-03-2018 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 AM354_RS12670 4cbded4de7553ed4ffeaab5fd19580f8 255 Gene3D G3DSA:3.90.79.10 126 255 2.9E-33 T 29-03-2018 AM354_RS12670 4cbded4de7553ed4ffeaab5fd19580f8 255 SUPERFAMILY SSF55811 79 241 1.02E-38 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 AM354_RS12670 4cbded4de7553ed4ffeaab5fd19580f8 255 ProSitePatterns PS00893 Nudix box signature. 159 180 - T 29-03-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AM354_RS12670 4cbded4de7553ed4ffeaab5fd19580f8 255 Hamap MF_00297 NADH pyrophosphatase [nudC]. 1 255 42.95 T 29-03-2018 IPR022925 NADH pyrophosphatase NudC GO:0000210 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 AM354_RS12670 4cbded4de7553ed4ffeaab5fd19580f8 255 SUPERFAMILY SSF55811 3 96 1.11E-31 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 AM354_RS12670 4cbded4de7553ed4ffeaab5fd19580f8 255 Pfam PF00293 NUDIX domain 130 234 2.2E-17 T 29-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AM354_RS23965 90c23e1def77efd41f213234c9fbdb7e 402 Pfam PF14486 Domain of unknown function (DUF4432) 63 368 2.0E-110 T 29-03-2018 IPR027839 Protein of unknown function DUF4432 AM354_RS23965 90c23e1def77efd41f213234c9fbdb7e 402 Gene3D G3DSA:2.70.98.10 53 374 1.0E-18 T 29-03-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 AM354_RS19555 67e610e3894e95a343a8fe55e5571e9b 328 Pfam PF02653 Branched-chain amino acid transport system / permease component 41 311 5.2E-38 T 29-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AM354_RS19555 67e610e3894e95a343a8fe55e5571e9b 328 Gene3D G3DSA:1.10.3470.10 14 320 3.4E-25 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS25575 9e84ded2c26a6b54efae13be54def0f6 75 SUPERFAMILY SSF140376 2 75 3.79E-28 T 29-03-2018 AM354_RS25575 9e84ded2c26a6b54efae13be54def0f6 75 Pfam PF06150 ChaB 9 75 2.3E-26 T 29-03-2018 IPR009317 ChaB AM354_RS13710 a04aede8186ba036da24f61a1c79e7ee 183 Gene3D G3DSA:1.20.120.330 6 169 7.3E-57 T 29-03-2018 AM354_RS13710 a04aede8186ba036da24f61a1c79e7ee 183 SUPERFAMILY SSF158668 6 168 4.05E-57 T 29-03-2018 AM354_RS13710 a04aede8186ba036da24f61a1c79e7ee 183 Pfam PF05068 Mannitol repressor 8 167 2.9E-62 T 29-03-2018 IPR007761 Mannitol repressor MtlR-like AM354_RS12295 46befbc7c964552ef75ee67aa786ae49 141 Pfam PF02082 Transcriptional regulator 2 83 1.8E-24 T 29-03-2018 IPR000944 Transcription regulator Rrf2-type AM354_RS12295 46befbc7c964552ef75ee67aa786ae49 141 Gene3D G3DSA:1.10.10.10 1 133 7.7E-29 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS12295 46befbc7c964552ef75ee67aa786ae49 141 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 2 128 2.2E-35 T 29-03-2018 IPR000944 Transcription regulator Rrf2-type AM354_RS12295 46befbc7c964552ef75ee67aa786ae49 141 Hamap MF_01177 HTH-type transcriptional repressor NsrR [nsrR]. 1 141 44.725 T 29-03-2018 IPR023761 Transcriptional repressor HTH, NsrR GO:0045892 AM354_RS12295 46befbc7c964552ef75ee67aa786ae49 141 SUPERFAMILY SSF46785 2 131 9.93E-34 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS03915 e826693c97dbe295f4016a0c1fd3a64d 513 Pfam PF17482 Phage tail sheath C-terminal domain 401 501 1.3E-13 T 29-03-2018 IPR020287 Tail sheath protein, C-terminal domain AM354_RS03915 e826693c97dbe295f4016a0c1fd3a64d 513 Pfam PF04984 Phage tail sheath protein subtilisin-like domain 246 397 2.5E-15 T 29-03-2018 IPR035089 Tail sheath protein, subtilisin-like domain AM354_RS16990 e1773b562c10c441969cd17318533855 133 PIRSF PIRSF006318 1 133 2.1E-52 T 29-03-2018 IPR009386 Protein of unknown function DUF1043 AM354_RS16990 e1773b562c10c441969cd17318533855 133 Pfam PF06295 Protein of unknown function (DUF1043) 6 126 2.1E-49 T 29-03-2018 IPR009386 Protein of unknown function DUF1043 AM354_RS14070 e9ae81ac243d4b9ef823f3af7fa4cf34 139 SUPERFAMILY SSF102546 1 139 7.59E-42 T 29-03-2018 IPR023750 RbsD-like domain GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 AM354_RS14070 e9ae81ac243d4b9ef823f3af7fa4cf34 139 Hamap MF_01661 D-ribose pyranase [rbsD]. 1 139 32.222 T 29-03-2018 IPR023064 D-ribose pyranase GO:0016872 AM354_RS14070 e9ae81ac243d4b9ef823f3af7fa4cf34 139 Gene3D G3DSA:3.40.1650.10 1 139 2.1E-39 T 29-03-2018 IPR023750 RbsD-like domain GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 AM354_RS14070 e9ae81ac243d4b9ef823f3af7fa4cf34 139 Pfam PF05025 RbsD / FucU transport protein family 1 138 2.4E-46 T 29-03-2018 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 AM354_RS07830 3fc16fa72ac4461843480365c11e71ae 190 Pfam PF00857 Isochorismatase family 4 182 2.7E-33 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM354_RS07830 3fc16fa72ac4461843480365c11e71ae 190 SUPERFAMILY SSF52499 2 184 7.72E-40 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM354_RS07830 3fc16fa72ac4461843480365c11e71ae 190 Gene3D G3DSA:3.40.50.850 1 190 1.6E-37 T 29-03-2018 AM354_RS06685 69defef4fbe6a787f7a5f2a885ec65a2 219 SUPERFAMILY SSF49354 12 114 1.13E-8 T 29-03-2018 IPR008962 PapD-like AM354_RS06685 69defef4fbe6a787f7a5f2a885ec65a2 219 Gene3D G3DSA:2.60.40.10 17 142 1.8E-16 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS06685 69defef4fbe6a787f7a5f2a885ec65a2 219 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 17 143 3.9E-5 T 29-03-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 AM354_RS16465 8a43e9781f37e828e671b4913ef57a19 445 TIGRFAM TIGR00797 matE: MATE efflux family protein 21 414 2.6E-97 T 29-03-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AM354_RS16465 8a43e9781f37e828e671b4913ef57a19 445 Pfam PF01554 MatE 245 398 9.9E-14 T 29-03-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AM354_RS16465 8a43e9781f37e828e671b4913ef57a19 445 Pfam PF01554 MatE 21 181 3.4E-34 T 29-03-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AM354_RS09415 57ae5790740e5ee5795c4c9f4269d727 133 SUPERFAMILY SSF54427 26 113 3.38E-6 T 29-03-2018 IPR032710 NTF2-like domain AM354_RS09415 57ae5790740e5ee5795c4c9f4269d727 133 Gene3D G3DSA:3.10.450.50 1 122 5.9E-7 T 29-03-2018 AM354_RS09415 57ae5790740e5ee5795c4c9f4269d727 133 Pfam PF12680 SnoaL-like domain 22 110 6.9E-7 T 29-03-2018 IPR009959 Polyketide cyclase SnoaL-like domain AM354_RS19070 13eb542ea4416e5f4cac4b35e50471c3 151 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 32 140 8.3E-52 T 29-03-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 AM354_RS19070 13eb542ea4416e5f4cac4b35e50471c3 151 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 28 150 30.429 T 29-03-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 AM354_RS19070 13eb542ea4416e5f4cac4b35e50471c3 151 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 111 143 2.3E-10 T 29-03-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 AM354_RS19070 13eb542ea4416e5f4cac4b35e50471c3 151 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 114 138 - T 29-03-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site AM354_RS19070 13eb542ea4416e5f4cac4b35e50471c3 151 SUPERFAMILY SSF57716 111 149 4.56E-10 T 29-03-2018 AM354_RS19070 13eb542ea4416e5f4cac4b35e50471c3 151 SUPERFAMILY SSF109635 9 110 3.4E-38 T 29-03-2018 AM354_RS19070 13eb542ea4416e5f4cac4b35e50471c3 151 PRINTS PR00618 DksA/TraR zinc finger signature 126 138 9.9E-5 T 29-03-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria AM354_RS19070 13eb542ea4416e5f4cac4b35e50471c3 151 PRINTS PR00618 DksA/TraR zinc finger signature 114 125 9.9E-5 T 29-03-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria AM354_RS06695 e953a2b07cbe9f63f0e961cf8fda30bd 839 Pfam PF16967 E-set like domain 280 347 7.9E-24 T 29-03-2018 IPR032636 Pilus assembly protein, E-set like domain AM354_RS06695 e953a2b07cbe9f63f0e961cf8fda30bd 839 Pfam PF15976 CS1-pili formation C-terminal 729 821 2.8E-27 T 29-03-2018 IPR031917 Pilus assembly protein, C-terminal domain AM354_RS02320 f9b7389c16d74a3d5852e41b20321529 220 Pfam PF02517 CAAX protease self-immunity 120 210 9.3E-12 T 29-03-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 AM354_RS13305 a6b1fe34334db7e5ce7105b342c183fa 467 PIRSF PIRSF006060 1 467 3.6E-61 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM354_RS13305 a6b1fe34334db7e5ce7105b342c183fa 467 ProSitePatterns PS00218 Amino acid permeases signature. 43 73 - T 29-03-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 AM354_RS13305 a6b1fe34334db7e5ce7105b342c183fa 467 Pfam PF00324 Amino acid permease 18 430 3.7E-104 T 29-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 AM354_RS21890 32143af34ebdff9ad88fab3b70713a58 723 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 444 715 2.6E-11 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS21890 32143af34ebdff9ad88fab3b70713a58 723 SUPERFAMILY SSF161098 406 505 5.01E-6 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS21890 32143af34ebdff9ad88fab3b70713a58 723 SUPERFAMILY SSF50969 96 370 1.41E-11 T 29-03-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like AM354_RS21890 32143af34ebdff9ad88fab3b70713a58 723 Gene3D G3DSA:1.10.3720.10 14 501 1.2E-19 T 29-03-2018 AM354_RS21890 32143af34ebdff9ad88fab3b70713a58 723 Gene3D G3DSA:1.10.3720.10 502 715 1.7E-25 T 29-03-2018 AM354_RS21890 32143af34ebdff9ad88fab3b70713a58 723 SUPERFAMILY SSF161098 496 705 5.36E-19 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS14280 348c491947b5ce9ecdc326d60c564223 394 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 10 82 1.2E-18 T 29-03-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 AM354_RS14280 348c491947b5ce9ecdc326d60c564223 394 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 193 392 4.8E-59 T 29-03-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 AM354_RS16720 054411bc3876baf78f71cff652672b1f 1267 TIGRFAM TIGR02099 TIGR02099: TIGR02099 family protein 2 1263 0.0 T 29-03-2018 IPR011836 Conserved hypothetical protein CHP02099 AM354_RS16720 054411bc3876baf78f71cff652672b1f 1267 Pfam PF13502 AsmA-like C-terminal region 1010 1253 3.0E-63 T 29-03-2018 IPR032712 AsmA-like, C-terminal AM354_RS16720 054411bc3876baf78f71cff652672b1f 1267 Pfam PF13116 Protein of unknown function 503 785 1.3E-101 T 29-03-2018 IPR025263 Domain of unknown function DUF3971 AM354_RS19560 6911b65139abaa11dd27540c35485e3c 344 Pfam PF02653 Branched-chain amino acid transport system / permease component 44 316 6.8E-28 T 29-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AM354_RS19560 6911b65139abaa11dd27540c35485e3c 344 Gene3D G3DSA:1.10.3470.10 10 322 2.6E-14 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS13540 e93136ff5d803af997ca8096cb90af3d 467 PRINTS PR00131 Glycosyl hydrolase family 1 signature 358 366 8.2E-16 T 29-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM354_RS13540 e93136ff5d803af997ca8096cb90af3d 467 PRINTS PR00131 Glycosyl hydrolase family 1 signature 379 390 8.2E-16 T 29-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM354_RS13540 e93136ff5d803af997ca8096cb90af3d 467 PRINTS PR00131 Glycosyl hydrolase family 1 signature 425 437 8.2E-16 T 29-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM354_RS13540 e93136ff5d803af997ca8096cb90af3d 467 PRINTS PR00131 Glycosyl hydrolase family 1 signature 400 417 8.2E-16 T 29-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM354_RS13540 e93136ff5d803af997ca8096cb90af3d 467 PRINTS PR00131 Glycosyl hydrolase family 1 signature 292 306 8.2E-16 T 29-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM354_RS13540 e93136ff5d803af997ca8096cb90af3d 467 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 9 23 - T 29-03-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site AM354_RS13540 e93136ff5d803af997ca8096cb90af3d 467 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 358 366 - T 29-03-2018 IPR018120 Glycoside hydrolase family 1, active site AM354_RS13540 e93136ff5d803af997ca8096cb90af3d 467 Pfam PF00232 Glycosyl hydrolase family 1 3 460 1.1E-158 T 29-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM354_RS13540 e93136ff5d803af997ca8096cb90af3d 467 SUPERFAMILY SSF51445 4 461 2.71E-163 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily AM354_RS13540 e93136ff5d803af997ca8096cb90af3d 467 Gene3D G3DSA:3.20.20.80 1 467 5.1E-156 T 29-03-2018 AM354_RS06030 4e7f218ff1a1661b210662445f601d6b 432 TIGRFAM TIGR00814 stp: serine transporter 20 421 5.4E-180 T 29-03-2018 IPR004694 Hydroxy amino acid transporter GO:0005215|GO:0006810|GO:0016021 AM354_RS06030 4e7f218ff1a1661b210662445f601d6b 432 Pfam PF03222 Tryptophan/tyrosine permease family 32 396 2.8E-11 T 29-03-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 AM354_RS03275 14720b533f23809adc7c2828fb96537b 60 Pfam PF10636 Hemin uptake protein hemP 25 60 3.9E-17 T 29-03-2018 IPR019600 Hemin uptake protein HemP AM354_RS03275 14720b533f23809adc7c2828fb96537b 60 Gene3D G3DSA:2.10.70.10 24 60 3.6E-17 T 29-03-2018 AM354_RS13090 f0fe2aeb6cad0f5763f4b97d6e70fedb 208 Pfam PF07947 YhhN family 26 206 3.2E-42 T 29-03-2018 IPR012506 YhhN-like GO:0016021 AM354_RS18460 891d56af2f91550789ed88271a112074 322 Pfam PF02371 Transposase IS116/IS110/IS902 family 195 278 2.4E-21 T 29-03-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AM354_RS18460 891d56af2f91550789ed88271a112074 322 Pfam PF01548 Transposase 9 154 4.2E-21 T 29-03-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AM354_RS25620 e3a90c85679fe4e4abf587645901c9f8 223 SMART SM00382 32 220 3.3E-13 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS25620 e3a90c85679fe4e4abf587645901c9f8 223 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS25620 e3a90c85679fe4e4abf587645901c9f8 223 Gene3D G3DSA:3.40.50.300 1 223 1.8E-59 T 29-03-2018 AM354_RS25620 e3a90c85679fe4e4abf587645901c9f8 223 Pfam PF00005 ABC transporter 24 171 3.2E-29 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS25620 e3a90c85679fe4e4abf587645901c9f8 223 SUPERFAMILY SSF52540 3 222 2.11E-57 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS02400 584ac5e1caa0db866b58d7230a7672d8 70 Pfam PF05433 Glycine zipper 2TM domain 32 69 9.6E-8 T 29-03-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 AM354_RS07395 4cc2f7e739e82c6556ebb337f3f45798 333 SUPERFAMILY SSF81345 3 325 1.18E-75 T 29-03-2018 IPR029022 ABC transporter, BtuC-like AM354_RS07395 4cc2f7e739e82c6556ebb337f3f45798 333 Pfam PF01032 FecCD transport family 9 325 1.3E-88 T 29-03-2018 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 AM354_RS07395 4cc2f7e739e82c6556ebb337f3f45798 333 Gene3D G3DSA:1.10.3470.10 1 333 9.1E-74 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS01485 2c46ae07e116c7f2f9c05d9cf15d4627 388 SUPERFAMILY SSF53697 20 374 6.43E-53 T 29-03-2018 AM354_RS01485 2c46ae07e116c7f2f9c05d9cf15d4627 388 Gene3D G3DSA:3.40.50.10490 222 375 2.5E-17 T 29-03-2018 AM354_RS01485 2c46ae07e116c7f2f9c05d9cf15d4627 388 Gene3D G3DSA:3.40.50.10490 8 221 1.1E-27 T 29-03-2018 AM354_RS01485 2c46ae07e116c7f2f9c05d9cf15d4627 388 TIGRFAM TIGR02815 agaS_fam: putative sugar isomerase, AgaS family 16 383 1.2E-163 T 29-03-2018 IPR014180 Sugar isomerase, AgaS GO:0016861 AM354_RS01485 2c46ae07e116c7f2f9c05d9cf15d4627 388 Pfam PF01380 SIS domain 53 190 1.9E-15 T 29-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AM354_RS18325 a16b8f6db49da6e2780a810fed0364c1 190 Pfam PF04471 Restriction endonuclease 71 180 5.6E-17 T 29-03-2018 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 AM354_RS18325 a16b8f6db49da6e2780a810fed0364c1 190 Gene3D G3DSA:3.40.1350.10 63 187 4.0E-14 T 29-03-2018 AM354_RS18325 a16b8f6db49da6e2780a810fed0364c1 190 SUPERFAMILY SSF52980 76 152 6.43E-11 T 29-03-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AM354_RS04045 828ed960d59a39564f571fa3c0706bb9 332 Gene3D G3DSA:3.30.50.20 259 323 6.8E-18 T 29-03-2018 AM354_RS04045 828ed960d59a39564f571fa3c0706bb9 332 Pfam PF06147 Protein of unknown function (DUF968) 131 329 1.4E-70 T 29-03-2018 IPR010373 Protein of unknown function DUF968 AM354_RS04045 828ed960d59a39564f571fa3c0706bb9 332 SMART SM00507 249 298 0.0027 T 29-03-2018 IPR003615 HNH nuclease AM354_RS16040 9dd0a6fcccb008f4c1fd345e2136a221 136 SUPERFAMILY SSF54686 3 133 2.75E-55 T 29-03-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 AM354_RS16040 9dd0a6fcccb008f4c1fd345e2136a221 136 Pfam PF00252 Ribosomal protein L16p/L10e 4 131 2.3E-47 T 29-03-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 AM354_RS16040 9dd0a6fcccb008f4c1fd345e2136a221 136 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 133 38.265 T 29-03-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS16040 9dd0a6fcccb008f4c1fd345e2136a221 136 Gene3D G3DSA:3.90.1170.10 1 136 6.8E-51 T 29-03-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 AM354_RS16040 9dd0a6fcccb008f4c1fd345e2136a221 136 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 58 69 - T 29-03-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS16040 9dd0a6fcccb008f4c1fd345e2136a221 136 PRINTS PR00060 Ribosomal protein L16 signature 57 86 2.2E-40 T 29-03-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS16040 9dd0a6fcccb008f4c1fd345e2136a221 136 PRINTS PR00060 Ribosomal protein L16 signature 87 116 2.2E-40 T 29-03-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS16040 9dd0a6fcccb008f4c1fd345e2136a221 136 PRINTS PR00060 Ribosomal protein L16 signature 41 52 2.2E-40 T 29-03-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS16040 9dd0a6fcccb008f4c1fd345e2136a221 136 PRINTS PR00060 Ribosomal protein L16 signature 23 35 2.2E-40 T 29-03-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS16040 9dd0a6fcccb008f4c1fd345e2136a221 136 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 81 92 - T 29-03-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS16040 9dd0a6fcccb008f4c1fd345e2136a221 136 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 126 2.0E-59 T 29-03-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS17735 b22e79f0e4485ba78810c7871dd15e11 108 Pfam PF12840 Helix-turn-helix domain 8 69 1.6E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS17735 b22e79f0e4485ba78810c7871dd15e11 108 Gene3D G3DSA:1.10.10.10 2 97 1.9E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS17735 b22e79f0e4485ba78810c7871dd15e11 108 SUPERFAMILY SSF46785 3 93 4.85E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS17735 b22e79f0e4485ba78810c7871dd15e11 108 SMART SM00418 8 89 5.8E-5 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS13960 e1d7e5537b5891452ab6c0fc6e60bd70 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 289 1.2E-29 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS13960 e1d7e5537b5891452ab6c0fc6e60bd70 296 SUPERFAMILY SSF161098 35 285 2.62E-32 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS13960 e1d7e5537b5891452ab6c0fc6e60bd70 296 Gene3D G3DSA:1.10.3720.10 19 287 1.0E-36 T 29-03-2018 AM354_RS13960 e1d7e5537b5891452ab6c0fc6e60bd70 296 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 28 294 6.0E-85 T 29-03-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 AM354_RS26015 4238bbf9a2fdf67b6787891dbb37a0de 69 SMART SM00357 5 69 9.4E-30 T 29-03-2018 IPR011129 Cold shock domain GO:0003676 AM354_RS26015 4238bbf9a2fdf67b6787891dbb37a0de 69 Gene3D G3DSA:2.40.50.140 1 69 4.3E-28 T 29-03-2018 AM354_RS26015 4238bbf9a2fdf67b6787891dbb37a0de 69 SUPERFAMILY SSF50249 3 68 2.4E-25 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS26015 4238bbf9a2fdf67b6787891dbb37a0de 69 PRINTS PR00050 Cold shock protein signature 6 21 7.8E-17 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM354_RS26015 4238bbf9a2fdf67b6787891dbb37a0de 69 PRINTS PR00050 Cold shock protein signature 42 60 7.8E-17 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM354_RS26015 4238bbf9a2fdf67b6787891dbb37a0de 69 PRINTS PR00050 Cold shock protein signature 27 36 7.8E-17 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM354_RS26015 4238bbf9a2fdf67b6787891dbb37a0de 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 17 36 - T 29-03-2018 IPR019844 Cold-shock conserved site AM354_RS26015 4238bbf9a2fdf67b6787891dbb37a0de 69 Pfam PF00313 'Cold-shock' DNA-binding domain 5 68 8.1E-32 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM354_RS26015 4238bbf9a2fdf67b6787891dbb37a0de 69 PIRSF PIRSF002599 1 69 1.5E-24 T 29-03-2018 IPR012156 Cold shock, CspA GO:0003676 AM354_RS21150 e402ed640564b963dfde8a7388b409e6 384 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 139 155 1.3E-6 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM354_RS21150 e402ed640564b963dfde8a7388b409e6 384 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 65 86 1.3E-6 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM354_RS21150 e402ed640564b963dfde8a7388b409e6 384 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 279 298 1.3E-6 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM354_RS21150 e402ed640564b963dfde8a7388b409e6 384 Gene3D G3DSA:3.40.190.10 163 330 1.2E-29 T 29-03-2018 AM354_RS21150 e402ed640564b963dfde8a7388b409e6 384 SUPERFAMILY SSF53850 36 358 1.04E-57 T 29-03-2018 AM354_RS21150 e402ed640564b963dfde8a7388b409e6 384 Pfam PF13416 Bacterial extracellular solute-binding protein 59 329 5.0E-28 T 29-03-2018 AM354_RS21150 e402ed640564b963dfde8a7388b409e6 384 Gene3D G3DSA:3.40.190.10 34 162 1.6E-17 T 29-03-2018 AM354_RS04530 fafab415977c9f494f0f82b228bbdc05 306 Pfam PF13407 Periplasmic binding protein domain 24 282 7.5E-55 T 29-03-2018 IPR025997 Periplasmic binding protein AM354_RS04530 fafab415977c9f494f0f82b228bbdc05 306 SUPERFAMILY SSF53822 23 302 6.63E-77 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS04530 fafab415977c9f494f0f82b228bbdc05 306 Gene3D G3DSA:3.40.50.2300 21 132 9.5E-22 T 29-03-2018 AM354_RS04530 fafab415977c9f494f0f82b228bbdc05 306 Gene3D G3DSA:3.40.50.2300 133 306 7.8E-42 T 29-03-2018 AM354_RS05550 e9084940ebe1f65b861bf42c0d84c431 566 Gene3D G3DSA:3.30.70.270 396 564 7.1E-46 T 29-03-2018 AM354_RS05550 e9084940ebe1f65b861bf42c0d84c431 566 SMART SM00267 392 560 5.5E-49 T 29-03-2018 IPR000160 GGDEF domain AM354_RS05550 e9084940ebe1f65b861bf42c0d84c431 566 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 399 560 3.6E-41 T 29-03-2018 IPR000160 GGDEF domain AM354_RS05550 e9084940ebe1f65b861bf42c0d84c431 566 SUPERFAMILY SSF55073 408 560 2.59E-40 T 29-03-2018 IPR029787 Nucleotide cyclase AM354_RS05550 e9084940ebe1f65b861bf42c0d84c431 566 Pfam PF00990 Diguanylate cyclase, GGDEF domain 404 556 2.5E-37 T 29-03-2018 IPR000160 GGDEF domain AM354_RS14580 b79cc2c0a677a14a476bd9932bcc54f0 311 Hamap MF_02039 Cell division protein FtsN [ftsN]. 34 311 37.446 T 29-03-2018 IPR011930 Cell division protein FtsN GO:0005515 AM354_RS14580 b79cc2c0a677a14a476bd9932bcc54f0 311 SUPERFAMILY SSF110997 236 306 7.32E-21 T 29-03-2018 IPR007730 Sporulation-related domain GO:0042834 AM354_RS14580 b79cc2c0a677a14a476bd9932bcc54f0 311 TIGRFAM TIGR02223 ftsN: cell division protein FtsN 2 305 6.1E-77 T 29-03-2018 IPR011930 Cell division protein FtsN GO:0005515 AM354_RS14580 b79cc2c0a677a14a476bd9932bcc54f0 311 Gene3D G3DSA:3.30.70.1070 239 308 5.5E-17 T 29-03-2018 IPR007730 Sporulation-related domain GO:0042834 AM354_RS14580 b79cc2c0a677a14a476bd9932bcc54f0 311 Pfam PF05036 Sporulation related domain 237 304 1.6E-18 T 29-03-2018 IPR007730 Sporulation-related domain GO:0042834 AM354_RS23055 8ff02afa9f8c3fce70cab3b93e2593fc 459 Pfam PF03611 PTS system sugar-specific permease component 12 408 5.8E-150 T 29-03-2018 IPR004703 Phosphotransferase system, sugar-specific permease component GO:0009401|GO:0016021 AM354_RS09635 18b35051dd04397885d84663fcfc4b13 391 Gene3D G3DSA:2.120.10.10 38 329 5.3E-6 T 29-03-2018 AM354_RS22545 7cde7ef745939bfe8b965eb8854ea6d0 287 Gene3D G3DSA:1.10.10.10 1 81 1.2E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS22545 7cde7ef745939bfe8b965eb8854ea6d0 287 Pfam PF03466 LysR substrate binding domain 87 274 1.1E-19 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS22545 7cde7ef745939bfe8b965eb8854ea6d0 287 SUPERFAMILY SSF46785 3 81 2.84E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS22545 7cde7ef745939bfe8b965eb8854ea6d0 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 5.9E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS22545 7cde7ef745939bfe8b965eb8854ea6d0 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 5.9E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS22545 7cde7ef745939bfe8b965eb8854ea6d0 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 5.9E-6 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS22545 7cde7ef745939bfe8b965eb8854ea6d0 287 Gene3D G3DSA:3.40.190.10 180 254 1.4E-8 T 29-03-2018 AM354_RS22545 7cde7ef745939bfe8b965eb8854ea6d0 287 Gene3D G3DSA:3.40.190.10 87 179 8.8E-12 T 29-03-2018 AM354_RS22545 7cde7ef745939bfe8b965eb8854ea6d0 287 SUPERFAMILY SSF53850 88 281 2.99E-25 T 29-03-2018 AM354_RS22545 7cde7ef745939bfe8b965eb8854ea6d0 287 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 5.2E-17 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS06320 630506b83e15a05e1661c299f53fa9a6 353 Pfam PF00534 Glycosyl transferases group 1 164 322 7.5E-27 T 29-03-2018 IPR001296 Glycosyl transferase, family 1 AM354_RS06320 630506b83e15a05e1661c299f53fa9a6 353 SUPERFAMILY SSF53756 12 344 1.26E-60 T 29-03-2018 AM354_RS06320 630506b83e15a05e1661c299f53fa9a6 353 Gene3D G3DSA:3.40.50.2000 119 343 4.7E-39 T 29-03-2018 AM354_RS13780 04a3e7ddb17319479d2a4227fd47bff1 422 Gene3D G3DSA:1.20.1250.20 3 207 2.0E-33 T 29-03-2018 AM354_RS13780 04a3e7ddb17319479d2a4227fd47bff1 422 Gene3D G3DSA:1.20.1250.20 221 420 4.2E-32 T 29-03-2018 AM354_RS13780 04a3e7ddb17319479d2a4227fd47bff1 422 Pfam PF07690 Major Facilitator Superfamily 18 375 2.1E-56 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS13780 04a3e7ddb17319479d2a4227fd47bff1 422 SUPERFAMILY SSF103473 7 413 2.35E-86 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS00510 79061ac3bb375a8676e61435491f4af0 335 Gene3D G3DSA:3.40.50.2300 144 303 1.9E-29 T 29-03-2018 AM354_RS00510 79061ac3bb375a8676e61435491f4af0 335 Gene3D G3DSA:3.40.50.2300 19 143 1.8E-12 T 29-03-2018 AM354_RS00510 79061ac3bb375a8676e61435491f4af0 335 Pfam PF13407 Periplasmic binding protein domain 28 289 3.0E-42 T 29-03-2018 IPR025997 Periplasmic binding protein AM354_RS00510 79061ac3bb375a8676e61435491f4af0 335 SUPERFAMILY SSF53822 26 330 4.71E-63 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS04040 71da4b0e72f9eb50d61a1f4c0edf4b32 303 Pfam PF16872 Putative phage abortive infection protein 196 270 5.2E-24 T 29-03-2018 IPR031709 Putative phage abortive infection protein AM354_RS00580 7cb2947c5bc304a132097ba34f24acbc 89 SMART SM00990 4 84 2.2E-19 T 29-03-2018 IPR014883 VRR-NUC domain GO:0016788 Reactome: R-HSA-6783310 AM354_RS18240 a0d507e1ac402cc306894da82f42b7f6 241 Pfam PF08900 Domain of unknown function (DUF1845) 14 234 3.6E-85 T 29-03-2018 IPR014996 Integrating conjugative element protein, PFL4669 AM354_RS18240 a0d507e1ac402cc306894da82f42b7f6 241 TIGRFAM TIGR03761 ICE_PFL4669: integrating conjugative element protein, PFL_4669 family 16 235 6.6E-79 T 29-03-2018 IPR014996 Integrating conjugative element protein, PFL4669 AM354_RS12945 35d62f9a29606a2e1690ebed00d51008 260 Gene3D G3DSA:3.90.190.10 27 203 1.7E-17 T 29-03-2018 IPR029021 Protein-tyrosine phosphatase-like AM354_RS12945 35d62f9a29606a2e1690ebed00d51008 260 Pfam PF13350 Tyrosine phosphatase family 13 260 8.3E-61 T 29-03-2018 IPR026893 Tyrosine/serine-protein phosphatase IphP-type AM354_RS12945 35d62f9a29606a2e1690ebed00d51008 260 SUPERFAMILY SSF52799 13 259 1.0E-52 T 29-03-2018 IPR029021 Protein-tyrosine phosphatase-like AM354_RS15100 8cfaca4486c442bb7b4b1e585aa860f0 318 PIRSF PIRSF016624 142 316 2.1E-5 T 29-03-2018 IPR012106 Protease, Mu phage/prophage I type AM354_RS15100 8cfaca4486c442bb7b4b1e585aa860f0 318 PIRSF PIRSF016624 5 177 7.8E-16 T 29-03-2018 IPR012106 Protease, Mu phage/prophage I type AM354_RS15100 8cfaca4486c442bb7b4b1e585aa860f0 318 Pfam PF10123 Mu-like prophage I protein 26 309 2.6E-49 T 29-03-2018 IPR012106 Protease, Mu phage/prophage I type AM354_RS18700 eed7f14dd87f25831317bf570a8e3f9c 116 Pfam PF02411 MerT mercuric transport protein 1 116 1.9E-64 T 29-03-2018 IPR003457 Mercuric transport protein MerT GO:0015097|GO:0015694|GO:0016020 AM354_RS18700 eed7f14dd87f25831317bf570a8e3f9c 116 Gene3D G3DSA:1.10.287.910 16 68 9.8E-19 T 29-03-2018 AM354_RS04610 47d8199d6332828fa3e0bfcc250d0735 127 Pfam PF04234 CopC domain 30 126 2.7E-24 T 29-03-2018 IPR007348 CopC domain GO:0005507|GO:0042597|GO:0046688 AM354_RS04610 47d8199d6332828fa3e0bfcc250d0735 127 SUPERFAMILY SSF81296 29 127 3.29E-26 T 29-03-2018 IPR014756 Immunoglobulin E-set AM354_RS04610 47d8199d6332828fa3e0bfcc250d0735 127 Gene3D G3DSA:2.60.40.1220 29 127 1.6E-28 T 29-03-2018 AM354_RS18855 7af755cd1c797ee0134f919ff0e74576 184 Pfam PF02325 YGGT family 108 171 9.7E-19 T 29-03-2018 IPR003425 CCB3/YggT GO:0016020 AM354_RS18855 7af755cd1c797ee0134f919ff0e74576 184 Pfam PF02325 YGGT family 10 76 4.6E-21 T 29-03-2018 IPR003425 CCB3/YggT GO:0016020 AM354_RS18500 14eea3bb205ee682b28b4f1ab261bf10 302 SUPERFAMILY SSF52540 33 228 1.67E-17 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS18500 14eea3bb205ee682b28b4f1ab261bf10 302 Gene3D G3DSA:3.40.50.300 20 212 4.5E-10 T 29-03-2018 AM354_RS18500 14eea3bb205ee682b28b4f1ab261bf10 302 Pfam PF05621 Bacterial TniB protein 27 278 1.2E-103 T 29-03-2018 IPR008868 Bacterial TniB AM354_RS11555 8169cf71e6dcba108ee1b7ec4164531a 349 Pfam PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 69 309 1.9E-33 T 29-03-2018 IPR009993 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase GO:0008417|GO:0009246|GO:0036065 AM354_RS11555 8169cf71e6dcba108ee1b7ec4164531a 349 Gene3D G3DSA:3.40.50.2000 164 291 7.3E-4 T 29-03-2018 AM354_RS00680 27d535d86e576986cbc82f8cb8108302 76 ProDom PD865026 ORF80 HKBM GENE GP15-GP3 ORF46 ORF-118 1 75 5.0E-11 T 29-03-2018 IPR022544 Bacteriophage P22, Orf80 AM354_RS00680 27d535d86e576986cbc82f8cb8108302 76 Pfam PF10834 Protein of unknown function (DUF2560) 3 75 9.7E-22 T 29-03-2018 IPR022544 Bacteriophage P22, Orf80 AM354_RS18090 d80f0513f474ce36bf2620a8c0a718ac 715 Gene3D G3DSA:3.40.720.10 123 462 1.8E-16 T 29-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 AM354_RS18090 d80f0513f474ce36bf2620a8c0a718ac 715 TIGRFAM TIGR03396 PC_PLC: phospholipase C, phosphocholine-specific 5 713 1.5E-281 T 29-03-2018 IPR017767 Bacterial phospholipase C, phosphocholine-specific GO:0034480 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 AM354_RS18090 d80f0513f474ce36bf2620a8c0a718ac 715 Pfam PF05506 Domain of unknown function (DUF756) 530 614 2.7E-21 T 29-03-2018 IPR008475 Bacterial phospholipase C, C-terminal domain GO:0004629|GO:0016042 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 AM354_RS18090 d80f0513f474ce36bf2620a8c0a718ac 715 Pfam PF05506 Domain of unknown function (DUF756) 628 699 1.1E-12 T 29-03-2018 IPR008475 Bacterial phospholipase C, C-terminal domain GO:0004629|GO:0016042 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 AM354_RS18090 d80f0513f474ce36bf2620a8c0a718ac 715 Pfam PF04185 Phosphoesterase family 44 457 1.0E-107 T 29-03-2018 IPR007312 Phosphoesterase GO:0016788 AM354_RS11055 9b93674776aff638f03d177672d0fdf8 407 Gene3D G3DSA:3.30.70.1250 129 226 2.5E-51 T 29-03-2018 IPR024052 Phosphopentomutase DeoB cap domain GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 AM354_RS11055 9b93674776aff638f03d177672d0fdf8 407 Hamap MF_00740 Phosphopentomutase [deoB]. 1 407 55.596 T 29-03-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 AM354_RS11055 9b93674776aff638f03d177672d0fdf8 407 Pfam PF01676 Metalloenzyme superfamily 2 398 2.1E-42 T 29-03-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 AM354_RS11055 9b93674776aff638f03d177672d0fdf8 407 TIGRFAM TIGR01696 deoB: phosphopentomutase 3 405 5.9E-193 T 29-03-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 AM354_RS11055 9b93674776aff638f03d177672d0fdf8 407 SUPERFAMILY SSF53649 1 114 4.06E-72 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AM354_RS11055 9b93674776aff638f03d177672d0fdf8 407 SUPERFAMILY SSF53649 236 407 4.06E-72 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AM354_RS11055 9b93674776aff638f03d177672d0fdf8 407 SUPERFAMILY SSF143856 117 235 7.45E-50 T 29-03-2018 IPR024052 Phosphopentomutase DeoB cap domain GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 AM354_RS11055 9b93674776aff638f03d177672d0fdf8 407 PIRSF PIRSF001491 1 407 1.4E-165 T 29-03-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 AM354_RS11055 9b93674776aff638f03d177672d0fdf8 407 Gene3D G3DSA:3.40.720.10 227 406 4.2E-13 T 29-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 AM354_RS11055 9b93674776aff638f03d177672d0fdf8 407 Gene3D G3DSA:3.40.720.10 1 128 7.7E-21 T 29-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 AM354_RS01500 18845e7811d62ddf4cf76e736f866c58 237 Gene3D G3DSA:2.40.10.220 107 237 1.3E-14 T 29-03-2018 AM354_RS01500 18845e7811d62ddf4cf76e736f866c58 237 Gene3D G3DSA:2.30.110.10 10 106 3.4E-15 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 AM354_RS01500 18845e7811d62ddf4cf76e736f866c58 237 Hamap MF_01457 Flagellar brake protein YcgR [ycgR]. 4 235 24.97 T 29-03-2018 IPR023787 Type III secretion system flagellar brake protein YcgR GO:0035438|GO:0071945 AM354_RS01500 18845e7811d62ddf4cf76e736f866c58 237 Pfam PF07317 Flagellar regulator YcgR 9 105 4.2E-16 T 29-03-2018 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal AM354_RS01500 18845e7811d62ddf4cf76e736f866c58 237 Pfam PF07238 PilZ domain 108 225 2.4E-9 T 29-03-2018 IPR009875 PilZ domain GO:0035438 AM354_RS21700 ab2da54faf15c0bdbab4e108a380d217 654 Pfam PF04632 Fusaric acid resistance protein family 23 515 1.6E-37 T 29-03-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0006810 AM354_RS24000 4992d7271ac0e6f7999a7f359e4c9af2 140 Gene3D G3DSA:1.10.10.10 31 133 2.0E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS24000 4992d7271ac0e6f7999a7f359e4c9af2 140 SUPERFAMILY SSF46785 29 133 3.91E-26 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS24000 4992d7271ac0e6f7999a7f359e4c9af2 140 Pfam PF01638 HxlR-like helix-turn-helix 35 116 1.3E-18 T 29-03-2018 IPR002577 Helix-turn-helix, HxlR type AM354_RS08505 7139182cba42e5fd42682ed547b59826 189 Gene3D G3DSA:3.10.450.50 43 189 9.7E-13 T 29-03-2018 AM354_RS08505 7139182cba42e5fd42682ed547b59826 189 SUPERFAMILY SSF54427 45 181 4.21E-17 T 29-03-2018 IPR032710 NTF2-like domain AM354_RS04055 4b47eb05ee528743caaf8283f9b46168 125 SUPERFAMILY SSF103084 3 121 2.48E-28 T 29-03-2018 IPR008822 Crossover junction endodeoxyribonuclease, RusA-like GO:0000287|GO:0006281|GO:0006310 AM354_RS04055 4b47eb05ee528743caaf8283f9b46168 125 Gene3D G3DSA:3.30.1330.70 1 124 6.4E-30 T 29-03-2018 IPR008822 Crossover junction endodeoxyribonuclease, RusA-like GO:0000287|GO:0006281|GO:0006310 AM354_RS04055 4b47eb05ee528743caaf8283f9b46168 125 Pfam PF05866 Endodeoxyribonuclease RusA 6 118 2.4E-19 T 29-03-2018 IPR008822 Crossover junction endodeoxyribonuclease, RusA-like GO:0000287|GO:0006281|GO:0006310 AM354_RS04055 4b47eb05ee528743caaf8283f9b46168 125 PIRSF PIRSF001007 1 125 9.3E-39 T 29-03-2018 IPR016281 Crossover junction endodeoxyribonuclease, RusA GO:0008821 AM354_RS20140 ecc2cb14fa3fc325a93781f71282519d 782 Gene3D G3DSA:3.40.710.10 260 629 3.5E-70 T 29-03-2018 AM354_RS20140 ecc2cb14fa3fc325a93781f71282519d 782 SUPERFAMILY SSF56601 220 233 3.94E-94 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM354_RS20140 ecc2cb14fa3fc325a93781f71282519d 782 SUPERFAMILY SSF56601 260 647 3.94E-94 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM354_RS20140 ecc2cb14fa3fc325a93781f71282519d 782 Pfam PF00905 Penicillin binding protein transpeptidase domain 312 526 9.8E-18 T 29-03-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AM354_RS20140 ecc2cb14fa3fc325a93781f71282519d 782 Pfam PF00912 Transglycosylase 59 209 5.4E-41 T 29-03-2018 IPR001264 Glycosyl transferase, family 51 AM354_RS20140 ecc2cb14fa3fc325a93781f71282519d 782 Gene3D G3DSA:1.10.3810.10 42 259 4.5E-45 T 29-03-2018 IPR001264 Glycosyl transferase, family 51 AM354_RS20140 ecc2cb14fa3fc325a93781f71282519d 782 SUPERFAMILY SSF53955 38 260 7.87E-52 T 29-03-2018 IPR023346 Lysozyme-like domain AM354_RS20140 ecc2cb14fa3fc325a93781f71282519d 782 TIGRFAM TIGR02073 PBP_1c: penicillin-binding protein 1C 32 778 1.5E-272 T 29-03-2018 IPR011815 Penicillin-binding protein 1C GO:0008955|GO:0009252 AM354_RS20140 ecc2cb14fa3fc325a93781f71282519d 782 Pfam PF06832 Penicillin-Binding Protein C-terminus Family 693 776 1.4E-15 T 29-03-2018 IPR009647 Penicillin-binding, C-terminal AM354_RS04440 5282e27df96bb8275fd06c8bdff00ed4 282 Gene3D G3DSA:2.60.120.620 19 263 4.2E-22 T 29-03-2018 AM354_RS04440 5282e27df96bb8275fd06c8bdff00ed4 282 SUPERFAMILY SSF51197 39 246 4.03E-27 T 29-03-2018 AM354_RS04440 5282e27df96bb8275fd06c8bdff00ed4 282 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 43 224 2.0E-11 T 29-03-2018 IPR008775 Phytanoyl-CoA dioxygenase AM354_RS18185 1e1a9589aa9bef3a25f20b127809cd98 167 SUPERFAMILY SSF49401 43 167 8.95E-18 T 29-03-2018 IPR008966 Adhesion domain AM354_RS18185 1e1a9589aa9bef3a25f20b127809cd98 167 Pfam PF00419 Fimbrial protein 32 167 3.7E-12 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS18185 1e1a9589aa9bef3a25f20b127809cd98 167 Gene3D G3DSA:2.60.40.1090 30 167 2.5E-10 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS08550 c30787c1739dbb7367efdd1c37496605 240 SUPERFAMILY SSF56300 1 205 4.11E-33 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like AM354_RS08550 c30787c1739dbb7367efdd1c37496605 240 Gene3D G3DSA:3.60.21.10 2 236 2.5E-25 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like AM354_RS08550 c30787c1739dbb7367efdd1c37496605 240 Hamap MF_00575 UDP-2,3-diacylglucosamine hydrolase [lpxH]. 1 240 134.031 T 29-03-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 AM354_RS08550 c30787c1739dbb7367efdd1c37496605 240 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 1 203 5.1E-10 T 29-03-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 AM354_RS08550 c30787c1739dbb7367efdd1c37496605 240 TIGRFAM TIGR01854 lipid_A_lpxH: UDP-2,3-diacylglucosamine diphosphatase 3 232 1.1E-107 T 29-03-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 AM354_RS15950 638b6456170dd78ec7983e547ee553bd 244 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 31 157 4.0E-62 T 29-03-2018 IPR013559 YheO-like AM354_RS15950 638b6456170dd78ec7983e547ee553bd 244 Pfam PF08348 YheO-like PAS domain 33 141 2.3E-36 T 29-03-2018 IPR013559 YheO-like AM354_RS15950 638b6456170dd78ec7983e547ee553bd 244 Gene3D G3DSA:1.10.10.60 189 241 1.1E-5 T 29-03-2018 AM354_RS15950 638b6456170dd78ec7983e547ee553bd 244 Pfam PF13309 HTH domain 175 232 1.9E-18 T 29-03-2018 AM354_RS07960 eed67dca6309441027b259c249547ada 400 Gene3D G3DSA:3.30.1150.10 322 394 3.8E-18 T 29-03-2018 AM354_RS07960 eed67dca6309441027b259c249547ada 400 Pfam PF06519 TolA C-terminal 304 397 1.9E-35 T 29-03-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0006810|GO:0016020 AM354_RS07960 eed67dca6309441027b259c249547ada 400 TIGRFAM TIGR02794 tolA_full: protein TolA 13 399 8.2E-85 T 29-03-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0006810|GO:0016020 AM354_RS07960 eed67dca6309441027b259c249547ada 400 SUPERFAMILY SSF74653 312 400 2.94E-21 T 29-03-2018 AM354_RS06225 23d543b1bd65e7b6c6cf7cd57fc5cd8f 381 Gene3D G3DSA:3.40.50.2000 112 378 1.4E-38 T 29-03-2018 AM354_RS06225 23d543b1bd65e7b6c6cf7cd57fc5cd8f 381 Pfam PF00534 Glycosyl transferases group 1 201 349 4.9E-26 T 29-03-2018 IPR001296 Glycosyl transferase, family 1 AM354_RS06225 23d543b1bd65e7b6c6cf7cd57fc5cd8f 381 SUPERFAMILY SSF53756 2 379 7.18E-67 T 29-03-2018 AM354_RS06225 23d543b1bd65e7b6c6cf7cd57fc5cd8f 381 Pfam PF13439 Glycosyltransferase Family 4 16 174 9.0E-10 T 29-03-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193 AM354_RS18420 8aafff5622b0ff7732fec470df5451bd 132 TIGRFAM TIGR03757 conj_TIGR03757: integrating conjugative element protein, PFL_4709 family 21 127 3.0E-40 T 29-03-2018 IPR011090 Integrating conjugative element protein, PFL4709 AM354_RS18420 8aafff5622b0ff7732fec470df5451bd 132 Pfam PF07511 Protein of unknown function (DUF1525) 20 128 6.3E-37 T 29-03-2018 IPR011090 Integrating conjugative element protein, PFL4709 AM354_RS23180 b8c5a052f16ee41d08691bd94c861944 509 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 174 198 2.2E-36 T 29-03-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23180 b8c5a052f16ee41d08691bd94c861944 509 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 389 415 2.2E-36 T 29-03-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23180 b8c5a052f16ee41d08691bd94c861944 509 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 249 273 2.2E-36 T 29-03-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23180 b8c5a052f16ee41d08691bd94c861944 509 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 139 158 2.2E-36 T 29-03-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23180 b8c5a052f16ee41d08691bd94c861944 509 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 337 356 2.2E-36 T 29-03-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23180 b8c5a052f16ee41d08691bd94c861944 509 Pfam PF00361 Proton-conducting membrane transporter 134 430 3.9E-71 T 29-03-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23180 b8c5a052f16ee41d08691bd94c861944 509 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 3 495 2.7E-182 T 29-03-2018 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS23810 7787e0cbe1fc43135a3fe78d81477de5 495 Gene3D G3DSA:3.30.420.40 242 491 3.9E-39 T 29-03-2018 AM354_RS23810 7787e0cbe1fc43135a3fe78d81477de5 495 SUPERFAMILY SSF53067 4 252 1.57E-53 T 29-03-2018 AM354_RS23810 7787e0cbe1fc43135a3fe78d81477de5 495 PIRSF PIRSF000538 1 495 1.0E-78 T 29-03-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AM354_RS23810 7787e0cbe1fc43135a3fe78d81477de5 495 Gene3D G3DSA:3.30.420.40 1 241 3.1E-57 T 29-03-2018 AM354_RS23810 7787e0cbe1fc43135a3fe78d81477de5 495 SUPERFAMILY SSF53067 251 490 8.88E-44 T 29-03-2018 AM354_RS23810 7787e0cbe1fc43135a3fe78d81477de5 495 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 259 442 7.9E-22 T 29-03-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AM354_RS23810 7787e0cbe1fc43135a3fe78d81477de5 495 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 355 375 - T 29-03-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AM354_RS23810 7787e0cbe1fc43135a3fe78d81477de5 495 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 248 2.3E-60 T 29-03-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AM354_RS03735 17d13f0404038a31f30584364e4153b8 297 SUPERFAMILY SSF103481 196 293 6.67E-9 T 29-03-2018 AM354_RS03735 17d13f0404038a31f30584364e4153b8 297 SUPERFAMILY SSF103481 47 144 4.45E-5 T 29-03-2018 AM354_RS03735 17d13f0404038a31f30584364e4153b8 297 Pfam PF00892 EamA-like transporter family 165 289 5.3E-8 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM354_RS03735 17d13f0404038a31f30584364e4153b8 297 Pfam PF00892 EamA-like transporter family 10 140 3.5E-7 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM354_RS21255 970d05974c84e8cc85c4632986d57e9e 111 TIGRFAM TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system 2 111 3.2E-62 T 29-03-2018 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria GO:0009055|GO:0051537 AM354_RS21255 970d05974c84e8cc85c4632986d57e9e 111 Gene3D G3DSA:3.10.20.30 4 111 2.8E-31 T 29-03-2018 IPR012675 Beta-grasp domain AM354_RS21255 970d05974c84e8cc85c4632986d57e9e 111 PRINTS PR00355 Adrenodoxin signature 42 52 1.9E-10 T 29-03-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 AM354_RS21255 970d05974c84e8cc85c4632986d57e9e 111 PRINTS PR00355 Adrenodoxin signature 60 74 1.9E-10 T 29-03-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 AM354_RS21255 970d05974c84e8cc85c4632986d57e9e 111 PRINTS PR00355 Adrenodoxin signature 83 91 1.9E-10 T 29-03-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 AM354_RS21255 970d05974c84e8cc85c4632986d57e9e 111 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 13 91 9.9E-15 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM354_RS21255 970d05974c84e8cc85c4632986d57e9e 111 SUPERFAMILY SSF54292 4 109 1.62E-33 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM354_RS21255 970d05974c84e8cc85c4632986d57e9e 111 ProSitePatterns PS00814 Adrenodoxin family, iron-sulfur binding region signature. 42 52 - T 29-03-2018 IPR018298 Adrenodoxin, iron-sulphur binding site GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 AM354_RS05410 115d96e59208abb292b78fd7d4129b1d 221 Pfam PF09829 Uncharacterized protein conserved in bacteria (DUF2057) 21 214 7.8E-52 T 29-03-2018 IPR018635 Uncharacterised protein family UPF0319 AM354_RS05410 115d96e59208abb292b78fd7d4129b1d 221 Hamap MF_00789 UPF0319 protein YccT [yccT]. 2 217 26.299 T 29-03-2018 IPR018635 Uncharacterised protein family UPF0319 AM354_RS07585 cc595e76d5cf43f6ff2027f9b2d0c454 259 SUPERFAMILY SSF51197 25 242 9.61E-10 T 29-03-2018 AM354_RS07585 cc595e76d5cf43f6ff2027f9b2d0c454 259 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 140 236 3.3E-6 T 29-03-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 AM354_RS07585 cc595e76d5cf43f6ff2027f9b2d0c454 259 Gene3D G3DSA:2.60.120.620 11 255 1.1E-22 T 29-03-2018 AM354_RS19895 91c51bd9f5b6a432c82f4a6c69765bfe 235 Gene3D G3DSA:1.25.40.10 31 217 5.0E-7 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS09835 43df505fa334f48171a776b258e5c7b7 264 SMART SM00900 149 247 2.5E-33 T 29-03-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 AM354_RS09835 43df505fa334f48171a776b258e5c7b7 264 Pfam PF04205 FMN-binding domain 149 244 1.2E-15 T 29-03-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 AM354_RS09835 43df505fa334f48171a776b258e5c7b7 264 TIGRFAM TIGR01938 nqrC: NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit 8 255 2.3E-95 T 29-03-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0009276|GO:0010181|GO:0016021|GO:0016655|GO:0055114 AM354_RS09835 43df505fa334f48171a776b258e5c7b7 264 PIRSF PIRSF009437 1 262 1.3E-103 T 29-03-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0009276|GO:0010181|GO:0016021|GO:0016655|GO:0055114 AM354_RS09835 43df505fa334f48171a776b258e5c7b7 264 Hamap MF_00427 Na(+)-translocating NADH-quinone reductase subunit C [nqrC]. 8 259 36.695 T 29-03-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0009276|GO:0010181|GO:0016021|GO:0016655|GO:0055114 AM354_RS22585 93b8143620dcf035161f0d346649a024 563 SUPERFAMILY SSF55781 220 339 1.43E-8 T 29-03-2018 IPR029016 GAF domain-like AM354_RS22585 93b8143620dcf035161f0d346649a024 563 SMART SM00387 445 547 1.1E-5 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS22585 93b8143620dcf035161f0d346649a024 563 Pfam PF07694 5TMR of 5TMR-LYT 22 187 2.9E-46 T 29-03-2018 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 AM354_RS22585 93b8143620dcf035161f0d346649a024 563 Gene3D G3DSA:3.30.565.10 330 544 2.4E-21 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS22585 93b8143620dcf035161f0d346649a024 563 SUPERFAMILY SSF55874 407 543 3.14E-18 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS22585 93b8143620dcf035161f0d346649a024 563 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 449 544 2.1E-7 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS22585 93b8143620dcf035161f0d346649a024 563 Pfam PF06580 Histidine kinase 353 430 2.1E-24 T 29-03-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 AM354_RS22585 93b8143620dcf035161f0d346649a024 563 Gene3D G3DSA:3.30.450.40 196 329 9.2E-7 T 29-03-2018 IPR029016 GAF domain-like AM354_RS19215 80c7a8899a7897a9151f7803cc22c64b 489 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 248 255 - T 29-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AM354_RS19215 80c7a8899a7897a9151f7803cc22c64b 489 Pfam PF00171 Aldehyde dehydrogenase family 12 476 2.2E-167 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM354_RS19215 80c7a8899a7897a9151f7803cc22c64b 489 Gene3D G3DSA:3.40.605.10 1 266 2.5E-89 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM354_RS19215 80c7a8899a7897a9151f7803cc22c64b 489 SUPERFAMILY SSF53720 3 478 5.76E-158 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM354_RS19215 80c7a8899a7897a9151f7803cc22c64b 489 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 276 287 - T 29-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AM354_RS19215 80c7a8899a7897a9151f7803cc22c64b 489 Gene3D G3DSA:3.40.309.10 267 462 2.6E-68 T 29-03-2018 AM354_RS13455 e5483a257f8204c6c626c9029b2d5226 551 TIGRFAM TIGR03368 cellulose_yhjU: cellulose synthase operon protein YhjU 21 549 2.8E-235 T 29-03-2018 IPR017744 Cellulose biosynthesis protein BcsG AM354_RS13455 e5483a257f8204c6c626c9029b2d5226 551 Pfam PF11658 Cellulose biosynthesis protein BcsG 23 546 4.0E-239 T 29-03-2018 IPR017744 Cellulose biosynthesis protein BcsG AM354_RS22110 a719da5686038ce1d76414081ac4bff8 128 Pfam PF03960 ArsC family 13 122 2.2E-16 T 29-03-2018 IPR006660 Arsenate reductase-like AM354_RS22110 a719da5686038ce1d76414081ac4bff8 128 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 10 123 2.1E-36 T 29-03-2018 IPR006504 Transcriptional regulator Spx/MgsR AM354_RS22110 a719da5686038ce1d76414081ac4bff8 128 SUPERFAMILY SSF52833 10 123 1.27E-33 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS22110 a719da5686038ce1d76414081ac4bff8 128 Gene3D G3DSA:3.40.30.10 9 124 2.3E-40 T 29-03-2018 AM354_RS17110 534d6f18a9b85b5e364da84b32b5a7b5 328 Pfam PF13409 Glutathione S-transferase, N-terminal domain 62 158 3.9E-24 T 29-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AM354_RS17110 534d6f18a9b85b5e364da84b32b5a7b5 328 Gene3D G3DSA:1.20.1050.10 189 327 8.4E-41 T 29-03-2018 AM354_RS17110 534d6f18a9b85b5e364da84b32b5a7b5 328 PIRSF PIRSF015753 5 324 8.8E-131 T 29-03-2018 IPR016639 Glutathione S-transferase (GST) KEGG: 00480+2.5.1.18|KEGG: 00980+2.5.1.18|KEGG: 00982+2.5.1.18|MetaCyc: PWY-4061|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7533 AM354_RS17110 534d6f18a9b85b5e364da84b32b5a7b5 328 SUPERFAMILY SSF52833 43 99 5.7E-14 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS17110 534d6f18a9b85b5e364da84b32b5a7b5 328 SUPERFAMILY SSF52833 126 163 5.7E-14 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS17110 534d6f18a9b85b5e364da84b32b5a7b5 328 Pfam PF13410 Glutathione S-transferase, C-terminal domain 204 257 6.4E-12 T 29-03-2018 AM354_RS17110 534d6f18a9b85b5e364da84b32b5a7b5 328 Gene3D G3DSA:3.40.30.10 36 188 1.5E-36 T 29-03-2018 AM354_RS17110 534d6f18a9b85b5e364da84b32b5a7b5 328 SUPERFAMILY SSF47616 171 324 1.03E-34 T 29-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like AM354_RS02605 659e182f16fae4d53bba0e4b0d25db38 286 Gene3D G3DSA:3.40.50.1820 2 286 3.3E-42 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS02605 659e182f16fae4d53bba0e4b0d25db38 286 Pfam PF12146 Serine aminopeptidase, S33 26 262 2.9E-21 T 29-03-2018 IPR022742 Serine aminopeptidase, S33 AM354_RS02605 659e182f16fae4d53bba0e4b0d25db38 286 SUPERFAMILY SSF53474 12 139 2.04E-52 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS02605 659e182f16fae4d53bba0e4b0d25db38 286 SUPERFAMILY SSF53474 180 286 2.04E-52 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS22205 3fffedd44cb07fbad7d5dd9fc752a342 69 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 49 3.8E-12 T 29-03-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM AM354_RS22205 3fffedd44cb07fbad7d5dd9fc752a342 69 Gene3D G3DSA:3.40.1620.10 1 57 1.1E-13 T 29-03-2018 AM354_RS22205 3fffedd44cb07fbad7d5dd9fc752a342 69 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 3 48 1.7E-11 T 29-03-2018 AM354_RS22205 3fffedd44cb07fbad7d5dd9fc752a342 69 SUPERFAMILY SSF143120 1 62 1.83E-12 T 29-03-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM AM354_RS04855 032e70b163e4328b125776b11d77c24a 193 Pfam PF02545 Maf-like protein 3 185 1.1E-45 T 29-03-2018 IPR003697 Maf-like protein GO:0047429 AM354_RS04855 032e70b163e4328b125776b11d77c24a 193 PIRSF PIRSF006305 1 192 2.5E-43 T 29-03-2018 IPR003697 Maf-like protein GO:0047429 AM354_RS04855 032e70b163e4328b125776b11d77c24a 193 Gene3D G3DSA:3.90.950.10 2 193 1.1E-56 T 29-03-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AM354_RS04855 032e70b163e4328b125776b11d77c24a 193 SUPERFAMILY SSF52972 2 185 2.68E-57 T 29-03-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AM354_RS04855 032e70b163e4328b125776b11d77c24a 193 TIGRFAM TIGR00172 maf: septum formation protein Maf 3 185 8.5E-59 T 29-03-2018 IPR003697 Maf-like protein GO:0047429 AM354_RS04855 032e70b163e4328b125776b11d77c24a 193 Hamap MF_00528 Septum formation protein Maf [maf]. 3 191 29.724 T 29-03-2018 IPR003697 Maf-like protein GO:0047429 AM354_RS24450 f1c51339561b8d0c2752d9213a47b014 400 Pfam PF02803 Thiolase, C-terminal domain 276 399 9.1E-44 T 29-03-2018 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 AM354_RS24450 f1c51339561b8d0c2752d9213a47b014 400 Gene3D G3DSA:3.40.47.10 158 271 1.2E-17 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS24450 f1c51339561b8d0c2752d9213a47b014 400 Gene3D G3DSA:3.40.47.10 1 157 2.0E-30 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS24450 f1c51339561b8d0c2752d9213a47b014 400 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 398 4.1E-133 T 29-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 AM354_RS24450 f1c51339561b8d0c2752d9213a47b014 400 SUPERFAMILY SSF53901 277 399 1.61E-43 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS24450 f1c51339561b8d0c2752d9213a47b014 400 SUPERFAMILY SSF53901 4 275 6.81E-75 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS24450 f1c51339561b8d0c2752d9213a47b014 400 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 86 104 - T 29-03-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 AM354_RS24450 f1c51339561b8d0c2752d9213a47b014 400 Gene3D G3DSA:3.40.47.10 272 397 2.9E-32 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM354_RS24450 f1c51339561b8d0c2752d9213a47b014 400 TIGRFAM TIGR02430 pcaF: 3-oxoadipyl-CoA thiolase 3 400 1.5E-211 T 29-03-2018 IPR012793 Beta-ketoadipyl CoA thiolase GO:0016747|GO:0019619 KEGG: 00250+2.3.1.17|KEGG: 00360+2.3.1.174|KEGG: 00362+2.3.1.174|MetaCyc: PWY-1361|MetaCyc: PWY-2361|MetaCyc: PWY-6185 AM354_RS24450 f1c51339561b8d0c2752d9213a47b014 400 PIRSF PIRSF000429 1 400 4.8E-125 T 29-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 AM354_RS24450 f1c51339561b8d0c2752d9213a47b014 400 ProSitePatterns PS00099 Thiolases active site. 381 394 - T 29-03-2018 IPR020610 Thiolase, active site GO:0008152|GO:0016747 AM354_RS24450 f1c51339561b8d0c2752d9213a47b014 400 Pfam PF00108 Thiolase, N-terminal domain 5 267 9.6E-73 T 29-03-2018 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 AM354_RS24450 f1c51339561b8d0c2752d9213a47b014 400 ProSitePatterns PS00737 Thiolases signature 2. 346 362 - T 29-03-2018 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 AM354_RS02620 55c58c1046989bb8dbfc24e8b9ac9594 157 Gene3D G3DSA:1.10.10.10 5 153 2.4E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS02620 55c58c1046989bb8dbfc24e8b9ac9594 157 SMART SM00347 40 140 6.0E-9 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM354_RS02620 55c58c1046989bb8dbfc24e8b9ac9594 157 Pfam PF13463 Winged helix DNA-binding domain 47 113 5.5E-12 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM354_RS02620 55c58c1046989bb8dbfc24e8b9ac9594 157 SUPERFAMILY SSF46785 17 152 3.25E-28 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS07280 259e0ff4837f2d841ef28948ec50fdcd 118 PIRSF PIRSF020555 1 118 1.2E-45 T 29-03-2018 IPR014508 Uncharacterised conserved protein withTPR-like repeats AM354_RS07280 259e0ff4837f2d841ef28948ec50fdcd 118 Pfam PF16068 Domain of unknown function (DUF4810) 25 109 1.0E-34 T 29-03-2018 IPR014508 Uncharacterised conserved protein withTPR-like repeats AM354_RS09965 a7ea22527b0fcce888fd737a796ce9c5 264 SUPERFAMILY SSF56219 40 255 1.07E-24 T 29-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase AM354_RS09965 a7ea22527b0fcce888fd737a796ce9c5 264 Gene3D G3DSA:3.60.10.10 31 256 5.0E-15 T 29-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase AM354_RS09965 a7ea22527b0fcce888fd737a796ce9c5 264 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 45 248 4.4E-7 T 29-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase AM354_RS21200 3677e52bcfdb4f2e1b8b621ff09fb6f7 421 Gene3D G3DSA:1.10.1790.10 223 328 3.2E-17 T 29-03-2018 IPR011608 PRD domain GO:0006355 AM354_RS21200 3677e52bcfdb4f2e1b8b621ff09fb6f7 421 Pfam PF00874 PRD domain 235 323 1.0E-16 T 29-03-2018 IPR011608 PRD domain GO:0006355 AM354_RS21200 3677e52bcfdb4f2e1b8b621ff09fb6f7 421 SUPERFAMILY SSF63520 226 328 1.07E-18 T 29-03-2018 IPR011608 PRD domain GO:0006355 AM354_RS01780 0d3e973759ba46052c43795ab6015df3 439 Gene3D G3DSA:3.50.50.60 23 418 1.1E-24 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS01780 0d3e973759ba46052c43795ab6015df3 439 Pfam PF01266 FAD dependent oxidoreductase 37 393 4.1E-37 T 29-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AM354_RS01780 0d3e973759ba46052c43795ab6015df3 439 SUPERFAMILY SSF51905 36 258 3.24E-31 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS01780 0d3e973759ba46052c43795ab6015df3 439 SUPERFAMILY SSF51905 366 401 3.24E-31 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS09540 e6b81d3047f1a2dc8c15a487793ef079 162 Pfam PF10696 Protein of unknown function (DUF2501) 82 160 2.6E-30 T 29-03-2018 IPR019637 Protein of unknown function DUF2501 AM354_RS21520 399a5f7ae35adc84e6bfec3428a1c721 87 Pfam PF11133 Head fiber protein 33 85 1.7E-9 T 29-03-2018 IPR022741 Bacteriophage B103, Gp8, head fibre AM354_RS01715 b9f2bb8083d7b7f38445b92243e5a033 281 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 89 102 - T 29-03-2018 IPR020583 Inositol monophosphatase, metal-binding site AM354_RS01715 b9f2bb8083d7b7f38445b92243e5a033 281 PRINTS PR00377 Inositol monophosphatase superfamily signature 183 204 2.5E-30 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AM354_RS01715 b9f2bb8083d7b7f38445b92243e5a033 281 PRINTS PR00377 Inositol monophosphatase superfamily signature 89 105 2.5E-30 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AM354_RS01715 b9f2bb8083d7b7f38445b92243e5a033 281 PRINTS PR00377 Inositol monophosphatase superfamily signature 47 67 2.5E-30 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AM354_RS01715 b9f2bb8083d7b7f38445b92243e5a033 281 PRINTS PR00377 Inositol monophosphatase superfamily signature 138 161 2.5E-30 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AM354_RS01715 b9f2bb8083d7b7f38445b92243e5a033 281 PRINTS PR00377 Inositol monophosphatase superfamily signature 69 85 2.5E-30 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AM354_RS01715 b9f2bb8083d7b7f38445b92243e5a033 281 PRINTS PR00377 Inositol monophosphatase superfamily signature 214 238 2.5E-30 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AM354_RS01715 b9f2bb8083d7b7f38445b92243e5a033 281 Gene3D G3DSA:3.40.190.80 158 266 1.6E-16 T 29-03-2018 AM354_RS01715 b9f2bb8083d7b7f38445b92243e5a033 281 Gene3D G3DSA:3.30.540.10 7 157 6.5E-45 T 29-03-2018 AM354_RS01715 b9f2bb8083d7b7f38445b92243e5a033 281 SUPERFAMILY SSF56655 10 263 8.38E-66 T 29-03-2018 AM354_RS01715 b9f2bb8083d7b7f38445b92243e5a033 281 Pfam PF00459 Inositol monophosphatase family 11 260 1.8E-50 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AM354_RS18135 18aea868b2eb550437896a0851e3deac 431 Pfam PF13434 L-lysine 6-monooxygenase (NADPH-requiring) 4 334 2.0E-107 T 29-03-2018 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase AM354_RS18135 18aea868b2eb550437896a0851e3deac 431 Gene3D G3DSA:3.50.50.60 1 162 6.5E-7 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS18135 18aea868b2eb550437896a0851e3deac 431 Gene3D G3DSA:3.50.50.60 193 418 9.5E-9 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS18135 18aea868b2eb550437896a0851e3deac 431 SUPERFAMILY SSF51905 166 333 9.93E-12 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS18135 18aea868b2eb550437896a0851e3deac 431 SUPERFAMILY SSF51905 1 220 2.33E-16 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS18135 18aea868b2eb550437896a0851e3deac 431 Gene3D G3DSA:3.50.50.60 163 182 0.23 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS18135 18aea868b2eb550437896a0851e3deac 431 Gene3D G3DSA:3.40.50.720 183 192 0.04 T 29-03-2018 AM354_RS13915 def9f43773be595ee6daf4d7ebbf403b 350 SUPERFAMILY SSF53474 153 288 2.95E-10 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS13915 def9f43773be595ee6daf4d7ebbf403b 350 Gene3D G3DSA:3.40.50.1820 129 341 1.3E-12 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS25225 c4a9e3d324c20d9f7880232bba95e55e 356 SUPERFAMILY SSF103088 153 261 1.16E-18 T 29-03-2018 IPR006665 OmpA-like domain AM354_RS25225 c4a9e3d324c20d9f7880232bba95e55e 356 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 12 64 6.5E-20 T 29-03-2018 IPR025713 Motility protein B, N-terminal domain AM354_RS25225 c4a9e3d324c20d9f7880232bba95e55e 356 Pfam PF00691 OmpA family 157 254 2.6E-13 T 29-03-2018 IPR006665 OmpA-like domain AM354_RS25225 c4a9e3d324c20d9f7880232bba95e55e 356 Gene3D G3DSA:3.30.1330.60 104 291 1.1E-37 T 29-03-2018 IPR006665 OmpA-like domain AM354_RS06765 b839f1af4ddb47c8b178183b8da5ac26 210 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 11 188 8.3E-42 T 29-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM354_RS06765 b839f1af4ddb47c8b178183b8da5ac26 210 SUPERFAMILY SSF53639 1 209 7.26E-60 T 29-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM354_RS06765 b839f1af4ddb47c8b178183b8da5ac26 210 SMART SM01007 11 190 7.8E-58 T 29-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM354_RS06765 b839f1af4ddb47c8b178183b8da5ac26 210 Gene3D G3DSA:3.40.225.10 5 192 7.5E-51 T 29-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM354_RS00360 17d153f6b855bfced0feeb6fd58b897f 133 ProSitePatterns PS00893 Nudix box signature. 37 58 - T 29-03-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AM354_RS00360 17d153f6b855bfced0feeb6fd58b897f 133 SUPERFAMILY SSF55811 1 125 3.93E-33 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 AM354_RS00360 17d153f6b855bfced0feeb6fd58b897f 133 Pfam PF00293 NUDIX domain 5 124 3.6E-19 T 29-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AM354_RS00360 17d153f6b855bfced0feeb6fd58b897f 133 PRINTS PR00502 NUDIX hydrolase family signature 46 61 3.3E-7 T 29-03-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AM354_RS00360 17d153f6b855bfced0feeb6fd58b897f 133 PRINTS PR00502 NUDIX hydrolase family signature 32 46 3.3E-7 T 29-03-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AM354_RS00360 17d153f6b855bfced0feeb6fd58b897f 133 Gene3D G3DSA:3.90.79.10 2 132 8.8E-30 T 29-03-2018 AM354_RS19180 f23c2955af3b74bda10325c107a0bdfa 313 Gene3D G3DSA:3.10.180.10 2 209 1.4E-27 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS19180 f23c2955af3b74bda10325c107a0bdfa 313 Gene3D G3DSA:3.10.180.10 210 304 9.4E-4 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS19180 f23c2955af3b74bda10325c107a0bdfa 313 SUPERFAMILY SSF54593 1 281 6.0E-32 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS19180 f23c2955af3b74bda10325c107a0bdfa 313 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 154 267 6.3E-13 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AM354_RS15010 c0eaf7585a8274a69b96e77cc7ddac37 291 Pfam PF02413 Caudovirales tail fibre assembly protein, lambda gpK 175 291 4.2E-26 T 29-03-2018 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly AM354_RS16585 32ea4eef9caabcb19b2e793e1d4440c2 453 Pfam PF00860 Permease family 30 413 5.8E-83 T 29-03-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 AM354_RS02735 3dcc3d473c34d2275faa1cd23765d6e1 433 Gene3D G3DSA:1.10.3080.10 2 428 1.1E-76 T 29-03-2018 IPR014743 Chloride channel, core GO:0005216|GO:0055085 Reactome: R-HSA-2672351 AM354_RS02735 3dcc3d473c34d2275faa1cd23765d6e1 433 Pfam PF00654 Voltage gated chloride channel 78 415 5.9E-75 T 29-03-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AM354_RS02735 3dcc3d473c34d2275faa1cd23765d6e1 433 SUPERFAMILY SSF81340 3 425 6.54E-87 T 29-03-2018 IPR014743 Chloride channel, core GO:0005216|GO:0055085 Reactome: R-HSA-2672351 AM354_RS02735 3dcc3d473c34d2275faa1cd23765d6e1 433 PRINTS PR00762 Chloride channel signature 116 135 8.7E-25 T 29-03-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AM354_RS02735 3dcc3d473c34d2275faa1cd23765d6e1 433 PRINTS PR00762 Chloride channel signature 383 402 8.7E-25 T 29-03-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AM354_RS02735 3dcc3d473c34d2275faa1cd23765d6e1 433 PRINTS PR00762 Chloride channel signature 330 350 8.7E-25 T 29-03-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AM354_RS02735 3dcc3d473c34d2275faa1cd23765d6e1 433 PRINTS PR00762 Chloride channel signature 365 381 8.7E-25 T 29-03-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AM354_RS02735 3dcc3d473c34d2275faa1cd23765d6e1 433 PRINTS PR00762 Chloride channel signature 166 185 8.7E-25 T 29-03-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AM354_RS03020 8071b864686f7ddc897511dfe24d086c 373 SUPERFAMILY SSF53067 143 340 8.93E-27 T 29-03-2018 AM354_RS03020 8071b864686f7ddc897511dfe24d086c 373 SUPERFAMILY SSF53067 66 111 8.93E-27 T 29-03-2018 AM354_RS03020 8071b864686f7ddc897511dfe24d086c 373 SUPERFAMILY SSF53067 5 36 8.93E-27 T 29-03-2018 AM354_RS03020 8071b864686f7ddc897511dfe24d086c 373 Gene3D G3DSA:3.30.420.40 3 186 2.0E-56 T 29-03-2018 AM354_RS03020 8071b864686f7ddc897511dfe24d086c 373 Gene3D G3DSA:3.30.420.40 223 369 6.3E-28 T 29-03-2018 AM354_RS03020 8071b864686f7ddc897511dfe24d086c 373 Pfam PF03702 Anhydro-N-acetylmuramic acid kinase 5 366 1.5E-165 T 29-03-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 KEGG: 00040+2.7.1.17 AM354_RS03020 8071b864686f7ddc897511dfe24d086c 373 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 4 367 41.633 T 29-03-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 KEGG: 00040+2.7.1.17 AM354_RS03740 953472dcc14a4d955e825ff452a7a95d 456 PIRSF PIRSF006060 8 453 8.4E-75 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM354_RS03740 953472dcc14a4d955e825ff452a7a95d 456 Pfam PF00324 Amino acid permease 25 388 7.9E-38 T 29-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 AM354_RS00415 59f708e0c517c74dd5e45235c57fcc5e 305 Gene3D G3DSA:3.90.550.10 1 304 5.4E-58 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS00415 59f708e0c517c74dd5e45235c57fcc5e 305 SUPERFAMILY SSF53448 8 295 4.51E-61 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS00415 59f708e0c517c74dd5e45235c57fcc5e 305 Pfam PF00483 Nucleotidyl transferase 10 278 1.6E-24 T 29-03-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AM354_RS00415 59f708e0c517c74dd5e45235c57fcc5e 305 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 8 277 4.1E-115 T 29-03-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 AM354_RS15310 9d4d6112ebd03bcdba23b8e680cd66bb 183 SUPERFAMILY SSF49401 29 182 2.14E-31 T 29-03-2018 IPR008966 Adhesion domain AM354_RS15310 9d4d6112ebd03bcdba23b8e680cd66bb 183 Gene3D G3DSA:2.60.40.1090 28 183 1.2E-24 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS08830 87013176e88428876817342e48d4b394 178 Gene3D G3DSA:1.20.120.330 2 177 0.0018 T 29-03-2018 AM354_RS08830 87013176e88428876817342e48d4b394 178 Pfam PF07445 Primosomal replication protein priC 9 175 1.7E-54 T 29-03-2018 IPR010890 Primosomal replication PriB/PriC AM354_RS14820 14d3eaf66f0aa70b5b7b5565ed421238 679 Pfam PF05170 AsmA family 1 570 1.5E-140 T 29-03-2018 IPR007844 AsmA AM354_RS06290 bd6df7d4a45f62ba73c114c632a5670a 1002 Pfam PF13946 Domain of unknown function (DUF4214) 180 239 3.7E-10 T 29-03-2018 IPR025282 Domain of unknown function DUF4214 AM354_RS17245 5e11e72298c683f41fcbfa16a831d3b6 146 Gene3D G3DSA:3.40.630.30 4 146 1.2E-24 T 29-03-2018 AM354_RS17245 5e11e72298c683f41fcbfa16a831d3b6 146 SUPERFAMILY SSF55729 2 142 1.49E-30 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS17245 5e11e72298c683f41fcbfa16a831d3b6 146 Pfam PF00583 Acetyltransferase (GNAT) family 13 132 3.1E-15 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS17245 5e11e72298c683f41fcbfa16a831d3b6 146 PIRSF PIRSF000452 1 146 3.5E-51 T 29-03-2018 IPR024170 Aminoglycoside N6-acetyltransferase AM354_RS20220 0fa2ceadada01e429b9db27dbea5d7a8 165 Pfam PF03938 Outer membrane protein (OmpH-like) 11 163 2.8E-37 T 29-03-2018 IPR005632 Chaperone protein Skp GO:0051082 AM354_RS20220 0fa2ceadada01e429b9db27dbea5d7a8 165 PIRSF PIRSF002094 1 165 2.1E-62 T 29-03-2018 IPR005632 Chaperone protein Skp GO:0051082 AM354_RS20220 0fa2ceadada01e429b9db27dbea5d7a8 165 Gene3D G3DSA:3.30.910.20 11 91 3.1E-11 T 29-03-2018 AM354_RS20220 0fa2ceadada01e429b9db27dbea5d7a8 165 SMART SM00935 12 165 2.1E-56 T 29-03-2018 IPR005632 Chaperone protein Skp GO:0051082 AM354_RS20220 0fa2ceadada01e429b9db27dbea5d7a8 165 SUPERFAMILY SSF111384 22 164 9.68E-40 T 29-03-2018 IPR024930 Skp domain AM354_RS20220 0fa2ceadada01e429b9db27dbea5d7a8 165 Gene3D G3DSA:3.30.910.20 92 165 1.7E-18 T 29-03-2018 AM354_RS23010 949d9600ddfbae317a1aef6eaffd9202 257 SUPERFAMILY SSF52540 6 251 4.02E-74 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS23010 949d9600ddfbae317a1aef6eaffd9202 257 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS23010 949d9600ddfbae317a1aef6eaffd9202 257 SMART SM00382 30 229 6.5E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS23010 949d9600ddfbae317a1aef6eaffd9202 257 Pfam PF00005 ABC transporter 21 181 1.1E-33 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS23010 949d9600ddfbae317a1aef6eaffd9202 257 Gene3D G3DSA:3.40.50.300 1 255 1.1E-72 T 29-03-2018 AM354_RS23010 949d9600ddfbae317a1aef6eaffd9202 257 PIRSF PIRSF039085 2 257 3.9E-120 T 29-03-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AM354_RS05540 2737c08b472c41617fcfef86ee1bb835 257 SMART SM00382 37 211 1.4E-17 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS05540 2737c08b472c41617fcfef86ee1bb835 257 Gene3D G3DSA:3.40.50.300 9 219 2.9E-57 T 29-03-2018 AM354_RS05540 2737c08b472c41617fcfef86ee1bb835 257 Pfam PF00005 ABC transporter 28 161 3.2E-31 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS05540 2737c08b472c41617fcfef86ee1bb835 257 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS05540 2737c08b472c41617fcfef86ee1bb835 257 SUPERFAMILY SSF52540 13 214 1.63E-64 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS13640 73406519736ee6df62d6e01cbb9f907a 464 Pfam PF03841 L-seryl-tRNA selenium transferase 83 451 8.7E-172 T 29-03-2018 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 AM354_RS13640 73406519736ee6df62d6e01cbb9f907a 464 TIGRFAM TIGR00474 selA: L-seryl-tRNA(Sec) selenium transferase 10 460 3.3E-184 T 29-03-2018 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 AM354_RS13640 73406519736ee6df62d6e01cbb9f907a 464 Pfam PF12390 Selenocysteine synthase N terminal 9 48 3.4E-8 T 29-03-2018 IPR025862 L-seryl-tRNA selenium transferase N-terminal domain KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 AM354_RS13640 73406519736ee6df62d6e01cbb9f907a 464 Hamap MF_00423 L-seryl-tRNA(Sec) selenium transferase [selA]. 1 464 248.733 T 29-03-2018 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 AM354_RS13640 73406519736ee6df62d6e01cbb9f907a 464 SUPERFAMILY SSF53383 73 459 1.42E-47 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS13640 73406519736ee6df62d6e01cbb9f907a 464 Gene3D G3DSA:3.40.640.10 102 347 1.3E-34 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS25400 3a977412490058ed2d3ab71389b0339b 134 Pfam PF04347 Flagellar biosynthesis protein, FliO 45 128 1.5E-22 T 29-03-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 AM354_RS25400 3a977412490058ed2d3ab71389b0339b 134 TIGRFAM TIGR03500 FliO_TIGR: flagellar biosynthetic protein FliO 33 101 1.1E-19 T 29-03-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 AM354_RS26210 17bfe44a868a648d1571947eff37a842 830 Gene3D G3DSA:3.40.50.300 363 824 2.4E-40 T 29-03-2018 AM354_RS26210 17bfe44a868a648d1571947eff37a842 830 Pfam PF02534 Type IV secretory system Conjugative DNA transfer 409 819 1.2E-82 T 29-03-2018 IPR003688 Type IV secretion system protein TraG/VirD4 GO:0009291|GO:0016020 AM354_RS26210 17bfe44a868a648d1571947eff37a842 830 SUPERFAMILY SSF52540 365 824 9.82E-38 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS19005 c2fe6a2f32b2d4aef093a00b55cfc8bb 307 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS19005 c2fe6a2f32b2d4aef093a00b55cfc8bb 307 Gene3D G3DSA:3.40.50.300 1 261 2.7E-64 T 29-03-2018 AM354_RS19005 c2fe6a2f32b2d4aef093a00b55cfc8bb 307 Pfam PF00005 ABC transporter 21 165 3.0E-32 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS19005 c2fe6a2f32b2d4aef093a00b55cfc8bb 307 SUPERFAMILY SSF52540 2 232 4.13E-63 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS19005 c2fe6a2f32b2d4aef093a00b55cfc8bb 307 SMART SM00382 30 213 1.0E-12 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS13620 31f7c7c3482bc3c983ce0b2996638428 303 Pfam PF03466 LysR substrate binding domain 90 290 1.6E-22 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS13620 31f7c7c3482bc3c983ce0b2996638428 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 67 1.3E-21 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS13620 31f7c7c3482bc3c983ce0b2996638428 303 Gene3D G3DSA:1.10.10.10 6 87 6.5E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS13620 31f7c7c3482bc3c983ce0b2996638428 303 Gene3D G3DSA:3.40.190.10 178 260 1.8E-12 T 29-03-2018 AM354_RS13620 31f7c7c3482bc3c983ce0b2996638428 303 Gene3D G3DSA:3.40.190.10 92 177 1.8E-7 T 29-03-2018 AM354_RS13620 31f7c7c3482bc3c983ce0b2996638428 303 SUPERFAMILY SSF53850 91 290 1.99E-22 T 29-03-2018 AM354_RS13620 31f7c7c3482bc3c983ce0b2996638428 303 SUPERFAMILY SSF46785 4 87 1.72E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS13620 31f7c7c3482bc3c983ce0b2996638428 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 3.4E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS13620 31f7c7c3482bc3c983ce0b2996638428 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 3.4E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS13620 31f7c7c3482bc3c983ce0b2996638428 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 3.4E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS26120 5bd66cdf51c4f250dce5a286b58f57d7 971 Pfam PF13700 Domain of unknown function (DUF4158) 13 169 7.9E-24 T 29-03-2018 IPR025296 Domain of unknown function DUF4158 AM354_RS26120 5bd66cdf51c4f250dce5a286b58f57d7 971 Pfam PF01526 Tn3 transposase DDE domain 564 946 8.1E-116 T 29-03-2018 IPR002513 Tn3 transposase DDE domain GO:0004803|GO:0006313 AM354_RS02985 f91edd5a41f5333d6b29da9abd35b466 87 ProDom PD063639 YJBD CYTOPLASMIC STY4411 YPO2363 ECS5006 Y1969 1 87 2.0E-19 T 29-03-2018 IPR020317 Uncharacterised protein family YjbD AM354_RS02985 f91edd5a41f5333d6b29da9abd35b466 87 Pfam PF11656 YjbD family (DUF3811) 1 87 1.9E-36 T 29-03-2018 IPR020317 Uncharacterised protein family YjbD AM354_RS20130 752b8041cbdeb0fd712e1f1cdbf35c9d 110 PIRSF PIRSF006257 3 110 1.6E-39 T 29-03-2018 IPR007384 Protein of unknown function UCP006257 AM354_RS20130 752b8041cbdeb0fd712e1f1cdbf35c9d 110 SUPERFAMILY SSF158452 3 108 6.41E-39 T 29-03-2018 IPR023376 YqcC-like domain AM354_RS20130 752b8041cbdeb0fd712e1f1cdbf35c9d 110 Pfam PF04287 tRNA pseudouridine synthase C 8 104 7.0E-36 T 29-03-2018 IPR023376 YqcC-like domain AM354_RS20130 752b8041cbdeb0fd712e1f1cdbf35c9d 110 Gene3D G3DSA:1.20.1440.40 5 106 4.5E-37 T 29-03-2018 IPR023376 YqcC-like domain AM354_RS04740 fb54da068a6afcee4cff40171df952d2 196 Hamap MF_01889 Penicillin-binding protein activator LpoB [lpoB]. 1 195 36.397 T 29-03-2018 IPR014094 Penicillin-binding protein activator LpoB AM354_RS04740 fb54da068a6afcee4cff40171df952d2 196 Pfam PF13036 Peptidoglycan-synthase activator LpoB 56 193 1.1E-33 T 29-03-2018 IPR014094 Penicillin-binding protein activator LpoB AM354_RS04740 fb54da068a6afcee4cff40171df952d2 196 TIGRFAM TIGR02722 lp_: uncharacterized lipoprotein 2 195 3.0E-48 T 29-03-2018 IPR014094 Penicillin-binding protein activator LpoB AM354_RS04740 fb54da068a6afcee4cff40171df952d2 196 Gene3D G3DSA:3.40.50.10070 85 196 4.5E-10 T 29-03-2018 AM354_RS15415 87629ad16c04819801006adf42c7aceb 117 Pfam PF10941 Protein of unknown function DUF2620 2 116 6.7E-48 T 29-03-2018 IPR021238 Protein of unknown function DUF2620 AM354_RS08460 e2226c1b136e07963e43a03cc4ae1e74 169 Gene3D G3DSA:3.10.180.10 1 66 2.2E-12 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS08460 e2226c1b136e07963e43a03cc4ae1e74 169 SUPERFAMILY SSF54593 1 141 8.59E-27 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS08460 e2226c1b136e07963e43a03cc4ae1e74 169 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 135 1.4E-13 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AM354_RS08460 e2226c1b136e07963e43a03cc4ae1e74 169 Gene3D G3DSA:3.10.180.10 72 166 1.9E-13 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS23190 94e6fb485ab76d26209ed7d8c4127e13 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 3.3E-14 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS23190 94e6fb485ab76d26209ed7d8c4127e13 291 Pfam PF03466 LysR substrate binding domain 88 285 1.8E-41 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS23190 94e6fb485ab76d26209ed7d8c4127e13 291 Gene3D G3DSA:1.10.10.10 1 87 6.9E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS23190 94e6fb485ab76d26209ed7d8c4127e13 291 SUPERFAMILY SSF46785 1 112 5.17E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS23190 94e6fb485ab76d26209ed7d8c4127e13 291 SUPERFAMILY SSF53850 90 288 8.32E-42 T 29-03-2018 AM354_RS23190 94e6fb485ab76d26209ed7d8c4127e13 291 Gene3D G3DSA:3.40.190.10 175 256 1.3E-16 T 29-03-2018 AM354_RS23190 94e6fb485ab76d26209ed7d8c4127e13 291 Gene3D G3DSA:3.40.190.10 89 174 2.1E-15 T 29-03-2018 AM354_RS02020 fa8c1a89e5b9565e9763790c34cfb715 184 Gene3D G3DSA:3.40.50.360 1 184 1.8E-28 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS02020 fa8c1a89e5b9565e9763790c34cfb715 184 SUPERFAMILY SSF52218 1 165 4.19E-40 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS02020 fa8c1a89e5b9565e9763790c34cfb715 184 Pfam PF02525 Flavodoxin-like fold 1 156 2.9E-38 T 29-03-2018 IPR003680 Flavodoxin-like fold AM354_RS07535 4bb7cdd461b76ae232d2c453700e61b1 134 PIRSF PIRSF021700 1 132 8.7E-23 T 29-03-2018 IPR009725 Predicted 3-demethylubiquinone-9 3-methyltransferase AM354_RS07535 4bb7cdd461b76ae232d2c453700e61b1 134 Gene3D G3DSA:3.10.180.10 1 133 4.7E-23 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS07535 4bb7cdd461b76ae232d2c453700e61b1 134 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 3 126 8.5E-23 T 29-03-2018 IPR028973 PhnB-like AM354_RS07535 4bb7cdd461b76ae232d2c453700e61b1 134 SUPERFAMILY SSF54593 1 128 6.31E-29 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS17290 e91b950fc13bbcd1c5bc1d2b1b787e91 274 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 10 266 1.3E-100 T 29-03-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 AM354_RS17290 e91b950fc13bbcd1c5bc1d2b1b787e91 274 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 5 273 18.46 T 29-03-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 AM354_RS17290 e91b950fc13bbcd1c5bc1d2b1b787e91 274 Pfam PF02673 Bacitracin resistance protein BacA 10 268 1.5E-86 T 29-03-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 AM354_RS00280 f8ddefc23b8d0bcd9f25ee691db3ffe7 422 Pfam PF04285 Protein of unknown function (DUF444) 4 420 1.3E-186 T 29-03-2018 IPR006698 Uncharacterised protein family UPF0229 AM354_RS00280 f8ddefc23b8d0bcd9f25ee691db3ffe7 422 Hamap MF_01232 UPF0229 protein YeaH [yeaH]. 1 422 41.854 T 29-03-2018 IPR006698 Uncharacterised protein family UPF0229 AM354_RS18290 74834a966a597359473bca2e78247a3e 80 Pfam PF13711 Domain of unknown function (DUF4160) 9 76 1.1E-21 T 29-03-2018 IPR025427 Protein of unknown function DUF4160 AM354_RS16815 8da17a27cee025f800e68b568a3257c2 293 Gene3D G3DSA:3.40.50.170 4 235 1.4E-21 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM354_RS16815 8da17a27cee025f800e68b568a3257c2 293 Pfam PF00551 Formyl transferase 124 188 4.5E-9 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM354_RS16815 8da17a27cee025f800e68b568a3257c2 293 SUPERFAMILY SSF53328 69 222 3.79E-21 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM354_RS04665 0bcc762dbe982fe612e855b92b1c2854 488 Pfam PF00854 POT family 82 438 7.9E-32 T 29-03-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-427975 AM354_RS04665 0bcc762dbe982fe612e855b92b1c2854 488 SUPERFAMILY SSF103473 11 199 3.31E-25 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS04665 0bcc762dbe982fe612e855b92b1c2854 488 SUPERFAMILY SSF103473 250 478 3.31E-25 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS04665 0bcc762dbe982fe612e855b92b1c2854 488 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 14 478 2.0E-65 T 29-03-2018 IPR005279 Dipeptide/tripeptide permease GO:0015197|GO:0015833|GO:0016020 AM354_RS04665 0bcc762dbe982fe612e855b92b1c2854 488 Gene3D G3DSA:1.20.1250.20 12 194 1.8E-19 T 29-03-2018 AM354_RS04665 0bcc762dbe982fe612e855b92b1c2854 488 Gene3D G3DSA:1.20.1250.20 262 483 3.0E-16 T 29-03-2018 AM354_RS17115 7115403ed75e90be73035df2bd782616 131 Pfam PF07681 DoxX 8 88 1.7E-16 T 29-03-2018 IPR032808 DoxX family AM354_RS15540 54046ff1fc23074d2e35acffd66fa43e 218 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 7 208 2.7E-26 T 29-03-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AM354_RS15540 54046ff1fc23074d2e35acffd66fa43e 218 SMART SM00934 7 209 8.8E-36 T 29-03-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AM354_RS15540 54046ff1fc23074d2e35acffd66fa43e 218 SUPERFAMILY SSF51366 4 217 8.38E-40 T 29-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 AM354_RS15540 54046ff1fc23074d2e35acffd66fa43e 218 Gene3D G3DSA:3.20.20.70 4 218 9.3E-26 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS03890 8b9ed7ba1425a2dc1e71fcd6248296ef 71 Pfam PF05489 Phage Tail Protein X 7 60 1.0E-14 T 29-03-2018 IPR008861 Phage Tail Protein X-like AM354_RS19925 b4d6b3738c8599dd3b0bbab485465ba0 100 SMART SM00530 32 87 1.1E-8 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM354_RS19925 b4d6b3738c8599dd3b0bbab485465ba0 100 Gene3D G3DSA:3.30.1190.10 51 97 2.5E-11 T 29-03-2018 AM354_RS19925 b4d6b3738c8599dd3b0bbab485465ba0 100 Pfam PF13744 Helix-turn-helix domain 18 89 9.2E-12 T 29-03-2018 AM354_RS19925 b4d6b3738c8599dd3b0bbab485465ba0 100 SUPERFAMILY SSF47413 25 94 6.19E-14 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS19925 b4d6b3738c8599dd3b0bbab485465ba0 100 Gene3D G3DSA:1.10.10.10 5 50 1.4E-4 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS07435 e56863bb71dcfa27a429d9495acb02cb 259 SUPERFAMILY SSF53850 1 253 1.96E-58 T 29-03-2018 AM354_RS07435 e56863bb71dcfa27a429d9495acb02cb 259 Gene3D G3DSA:3.40.190.10 17 137 4.0E-28 T 29-03-2018 AM354_RS07435 e56863bb71dcfa27a429d9495acb02cb 259 Gene3D G3DSA:3.40.190.10 138 207 2.0E-15 T 29-03-2018 AM354_RS07435 e56863bb71dcfa27a429d9495acb02cb 259 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 26 252 3.5E-53 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM354_RS07435 e56863bb71dcfa27a429d9495acb02cb 259 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 48 61 - T 29-03-2018 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 AM354_RS07435 e56863bb71dcfa27a429d9495acb02cb 259 SMART SM00062 25 254 2.3E-61 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM354_RS20350 f756b871fbfdbc68c13df95924095e64 217 Gene3D G3DSA:1.10.3720.10 1 217 2.3E-39 T 29-03-2018 AM354_RS20350 f756b871fbfdbc68c13df95924095e64 217 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 32 214 6.5E-22 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS20350 f756b871fbfdbc68c13df95924095e64 217 SUPERFAMILY SSF161098 9 201 2.35E-47 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS01560 fe57bd70de68c59153803e1c49103829 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 13 28 8.0E-6 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS01560 fe57bd70de68c59153803e1c49103829 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 45 60 8.0E-6 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS01560 fe57bd70de68c59153803e1c49103829 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 60 75 8.0E-6 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS01560 fe57bd70de68c59153803e1c49103829 115 Pfam PF12840 Helix-turn-helix domain 10 69 4.0E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS01560 fe57bd70de68c59153803e1c49103829 115 SMART SM00418 11 89 4.3E-19 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS01560 fe57bd70de68c59153803e1c49103829 115 SUPERFAMILY SSF46785 3 105 9.45E-28 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS01560 fe57bd70de68c59153803e1c49103829 115 Gene3D G3DSA:1.10.10.10 1 111 4.3E-25 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS24635 58185796d647a99f79f448129b1aff3f 123 Gene3D G3DSA:3.30.1330.40 2 123 5.2E-22 T 29-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like AM354_RS24635 58185796d647a99f79f448129b1aff3f 123 SUPERFAMILY SSF55298 5 122 3.93E-27 T 29-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like AM354_RS24635 58185796d647a99f79f448129b1aff3f 123 Pfam PF01042 Endoribonuclease L-PSP 14 122 8.4E-20 T 29-03-2018 IPR006175 YjgF/YER057c/UK114 family AM354_RS08940 f1c283c2a513954bc1f2ee7695ac05e8 115 Gene3D G3DSA:3.30.1300.30 27 113 3.3E-24 T 29-03-2018 AM354_RS08940 f1c283c2a513954bc1f2ee7695ac05e8 115 TIGRFAM TIGR01707 gspI: type II secretion system protein I 1 98 5.5E-26 T 29-03-2018 IPR010052 Type II secretion system protein I GO:0008565|GO:0015627|GO:0015628 AM354_RS08940 f1c283c2a513954bc1f2ee7695ac05e8 115 Pfam PF02501 Type II secretion system (T2SS), protein I 34 111 8.2E-24 T 29-03-2018 IPR003413 Type II secretion system protein I domain GO:0008565|GO:0015627|GO:0015628 AM354_RS08940 f1c283c2a513954bc1f2ee7695ac05e8 115 SUPERFAMILY SSF54523 32 112 9.03E-23 T 29-03-2018 AM354_RS17770 7ca6e5e6caa3f0da510f595313b018df 429 TIGRFAM TIGR00935 2a45: arsenite/antimonite efflux pump membrane protein 3 426 2.5E-218 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS17770 7ca6e5e6caa3f0da510f595313b018df 429 Pfam PF02040 Arsenical pump membrane protein 3 423 4.1E-158 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS17770 7ca6e5e6caa3f0da510f595313b018df 429 PRINTS PR00758 Arsenical pump membrane protein signature 101 125 4.2E-123 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS17770 7ca6e5e6caa3f0da510f595313b018df 429 PRINTS PR00758 Arsenical pump membrane protein signature 364 389 4.2E-123 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS17770 7ca6e5e6caa3f0da510f595313b018df 429 PRINTS PR00758 Arsenical pump membrane protein signature 323 345 4.2E-123 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS17770 7ca6e5e6caa3f0da510f595313b018df 429 PRINTS PR00758 Arsenical pump membrane protein signature 278 302 4.2E-123 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS17770 7ca6e5e6caa3f0da510f595313b018df 429 PRINTS PR00758 Arsenical pump membrane protein signature 144 168 4.2E-123 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS17770 7ca6e5e6caa3f0da510f595313b018df 429 PRINTS PR00758 Arsenical pump membrane protein signature 217 242 4.2E-123 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS17770 7ca6e5e6caa3f0da510f595313b018df 429 PRINTS PR00758 Arsenical pump membrane protein signature 397 421 4.2E-123 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS17770 7ca6e5e6caa3f0da510f595313b018df 429 PRINTS PR00758 Arsenical pump membrane protein signature 177 200 4.2E-123 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM354_RS12575 8aaad35c404f61a9b8ad5b6950a9d4a5 536 Pfam PF00668 Condensation domain 3 428 7.2E-34 T 29-03-2018 IPR001242 Condensation domain AM354_RS12575 8aaad35c404f61a9b8ad5b6950a9d4a5 536 Gene3D G3DSA:1.10.1200.10 442 529 0.003 T 29-03-2018 AM354_RS12575 8aaad35c404f61a9b8ad5b6950a9d4a5 536 SUPERFAMILY SSF52777 183 435 7.67E-37 T 29-03-2018 AM354_RS12575 8aaad35c404f61a9b8ad5b6950a9d4a5 536 SUPERFAMILY SSF52777 4 177 8.45E-23 T 29-03-2018 AM354_RS12575 8aaad35c404f61a9b8ad5b6950a9d4a5 536 Gene3D G3DSA:3.30.559.10 3 200 8.7E-20 T 29-03-2018 AM354_RS13425 a4a72228ca616314774c43fda59a9039 768 PRINTS PR01440 Cellulose synthase subunit B signature 384 405 1.8E-34 T 29-03-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 AM354_RS13425 a4a72228ca616314774c43fda59a9039 768 PRINTS PR01440 Cellulose synthase subunit B signature 88 109 1.8E-34 T 29-03-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 AM354_RS13425 a4a72228ca616314774c43fda59a9039 768 PRINTS PR01440 Cellulose synthase subunit B signature 178 199 1.8E-34 T 29-03-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 AM354_RS13425 a4a72228ca616314774c43fda59a9039 768 PRINTS PR01440 Cellulose synthase subunit B signature 517 536 1.8E-34 T 29-03-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 AM354_RS13425 a4a72228ca616314774c43fda59a9039 768 PRINTS PR01440 Cellulose synthase subunit B signature 220 243 1.8E-34 T 29-03-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 AM354_RS13425 a4a72228ca616314774c43fda59a9039 768 PRINTS PR01440 Cellulose synthase subunit B signature 707 727 1.8E-34 T 29-03-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 AM354_RS13425 a4a72228ca616314774c43fda59a9039 768 PRINTS PR01440 Cellulose synthase subunit B signature 301 322 1.8E-34 T 29-03-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 AM354_RS13425 a4a72228ca616314774c43fda59a9039 768 PRINTS PR01440 Cellulose synthase subunit B signature 554 574 1.8E-34 T 29-03-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 AM354_RS13425 a4a72228ca616314774c43fda59a9039 768 Pfam PF03170 Bacterial cellulose synthase subunit 60 668 1.8E-226 T 29-03-2018 IPR018513 Cellulose synthase BcsB, bacterial GO:0006011|GO:0016020 AM354_RS05905 11fa2cf446ba158eb6ac6e39bc49264a 376 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 307 338 - T 29-03-2018 IPR030390 RNA methyltransferase TrmA, active site AM354_RS05905 11fa2cf446ba158eb6ac6e39bc49264a 376 Gene3D G3DSA:3.40.50.150 2 373 1.0E-46 T 29-03-2018 AM354_RS05905 11fa2cf446ba158eb6ac6e39bc49264a 376 Hamap MF_01012 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC [rlmC]. 1 375 80.466 T 29-03-2018 IPR011825 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC GO:0016070|GO:0016436 AM354_RS05905 11fa2cf446ba158eb6ac6e39bc49264a 376 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 357 367 - T 29-03-2018 IPR030391 RNA methyltransferase TrmA, conserved site AM354_RS05905 11fa2cf446ba158eb6ac6e39bc49264a 376 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 208 374 4.5E-15 T 29-03-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 AM354_RS05905 11fa2cf446ba158eb6ac6e39bc49264a 376 SUPERFAMILY SSF53335 3 374 9.02E-53 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS05905 11fa2cf446ba158eb6ac6e39bc49264a 376 TIGRFAM TIGR02085 meth_trns_rumB: 23S rRNA (uracil-5-)-methyltransferase RumB 2 374 2.0E-208 T 29-03-2018 IPR011825 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC GO:0016070|GO:0016436 AM354_RS16820 c23297e4ee916c7b1b1ef992879cc264 262 Pfam PF01925 Sulfite exporter TauE/SafE 8 258 2.7E-34 T 29-03-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 AM354_RS04275 e3119b089f4b745d37e92573ee4a8b38 278 Pfam PF02146 Sir2 family 46 219 1.3E-50 T 29-03-2018 IPR003000 Sirtuin family GO:0070403 AM354_RS04275 e3119b089f4b745d37e92573ee4a8b38 278 Gene3D G3DSA:3.40.50.1220 28 274 2.7E-53 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM354_RS04275 e3119b089f4b745d37e92573ee4a8b38 278 SUPERFAMILY SSF52467 41 267 1.86E-73 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM354_RS04275 e3119b089f4b745d37e92573ee4a8b38 278 Hamap MF_01121 NAD-dependent protein deacylase [cobB]. 39 269 59.457 T 29-03-2018 IPR027546 Sirtuin, class III GO:0036054|GO:0036055|GO:0070403 Reactome: R-HSA-2151201 AM354_RS09810 036b5166cf20887ea0b496c3519f7344 75 Pfam PF04400 (Na+)-NQR maturation NqrM 23 64 4.3E-21 T 29-03-2018 IPR007495 (Na+)-NQR maturation factor NqrM AM354_RS19275 fd992970555327d5d2ffd08a5c6a35cd 536 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 55 498 2.8E-152 T 29-03-2018 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 AM354_RS19275 fd992970555327d5d2ffd08a5c6a35cd 536 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 12 498 2.7E-119 T 29-03-2018 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 AM354_RS19275 fd992970555327d5d2ffd08a5c6a35cd 536 ProSitePatterns PS01303 BCCT family of transporters signature. 311 320 - T 29-03-2018 IPR018093 BCCT transporter, conserved site GO:0005215|GO:0006810|GO:0016020 AM354_RS03460 0bb5034c73a704dfe35e279686761ed5 99 Pfam PF11080 Endoribonuclease GhoS 1 93 7.0E-36 T 29-03-2018 IPR022597 Endoribonuclease GhoS GO:0004521 AM354_RS03460 0bb5034c73a704dfe35e279686761ed5 99 ProDom PD066031 YDIZ CYTOPLASMIC STY1786 9 91 9.0E-14 T 29-03-2018 IPR020499 Uncharacterised protein family YdiZ AM354_RS06995 4c1640cd94f2c000780703ea110a2c66 306 Pfam PF00892 EamA-like transporter family 16 144 4.0E-21 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM354_RS06995 4c1640cd94f2c000780703ea110a2c66 306 Pfam PF00892 EamA-like transporter family 153 287 7.2E-18 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM354_RS06995 4c1640cd94f2c000780703ea110a2c66 306 SUPERFAMILY SSF103481 45 146 1.57E-12 T 29-03-2018 AM354_RS06995 4c1640cd94f2c000780703ea110a2c66 306 SUPERFAMILY SSF103481 189 290 7.59E-13 T 29-03-2018 AM354_RS24655 5eb53adaac06b295ea100a6c5084a7ba 312 TIGRFAM TIGR02277 PaaX_trns_reg: phenylacetic acid degradation operon negative regulatory protein PaaX 22 304 3.5E-100 T 29-03-2018 IPR011965 Phenylacetic acid degradation operon negative regulatory protein PaaX GO:0006351 AM354_RS24655 5eb53adaac06b295ea100a6c5084a7ba 312 Gene3D G3DSA:1.10.10.10 18 101 3.0E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS24655 5eb53adaac06b295ea100a6c5084a7ba 312 Pfam PF08223 PaaX-like protein C-terminal domain 184 282 3.1E-29 T 29-03-2018 IPR013225 PaaX-like, C-terminal AM354_RS24655 5eb53adaac06b295ea100a6c5084a7ba 312 Pfam PF07848 PaaX-like protein 20 88 5.1E-27 T 29-03-2018 IPR012906 PaaX-like, N-terminal AM354_RS24655 5eb53adaac06b295ea100a6c5084a7ba 312 PIRSF PIRSF020623 1 307 3.8E-112 T 29-03-2018 IPR011965 Phenylacetic acid degradation operon negative regulatory protein PaaX GO:0006351 AM354_RS10995 e2d709fb0ea1ef070afde8fb7afc6739 555 SMART SM00382 31 236 5.3E-8 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS10995 e2d709fb0ea1ef070afde8fb7afc6739 555 SMART SM00382 348 522 1.3E-12 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS10995 e2d709fb0ea1ef070afde8fb7afc6739 555 SUPERFAMILY SSF52540 301 526 2.58E-47 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS10995 e2d709fb0ea1ef070afde8fb7afc6739 555 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 2 553 1.7E-293 T 29-03-2018 IPR022374 ABC transporter, ATP-binding protein, ChvD AM354_RS10995 e2d709fb0ea1ef070afde8fb7afc6739 555 Gene3D G3DSA:3.40.50.300 290 550 6.0E-56 T 29-03-2018 AM354_RS10995 e2d709fb0ea1ef070afde8fb7afc6739 555 Gene3D G3DSA:3.40.50.300 12 289 2.4E-56 T 29-03-2018 AM354_RS10995 e2d709fb0ea1ef070afde8fb7afc6739 555 SUPERFAMILY SSF52540 11 243 1.1E-48 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS10995 e2d709fb0ea1ef070afde8fb7afc6739 555 Pfam PF12848 ABC transporter 230 306 1.4E-11 T 29-03-2018 IPR032781 ABC-transporter extension domain AM354_RS10995 e2d709fb0ea1ef070afde8fb7afc6739 555 Pfam PF00005 ABC transporter 340 473 9.7E-24 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS10995 e2d709fb0ea1ef070afde8fb7afc6739 555 Pfam PF00005 ABC transporter 22 191 4.8E-31 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS10995 e2d709fb0ea1ef070afde8fb7afc6739 555 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS24510 cc5af7748a0502e45cc5db38644d96ac 181 SUPERFAMILY SSF49401 35 180 1.09E-32 T 29-03-2018 IPR008966 Adhesion domain AM354_RS24510 cc5af7748a0502e45cc5db38644d96ac 181 Gene3D G3DSA:2.60.40.1090 33 181 4.7E-21 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS00985 ea8346450504183197e231af8735b2c2 86 SUPERFAMILY SSF159871 3 86 1.14E-23 T 29-03-2018 IPR010854 Domain of unknown function DUF1471 AM354_RS00985 ea8346450504183197e231af8735b2c2 86 Gene3D G3DSA:3.30.1660.10 22 86 1.1E-20 T 29-03-2018 IPR025543 Dodecin-like AM354_RS00985 ea8346450504183197e231af8735b2c2 86 Pfam PF07338 Protein of unknown function (DUF1471) 35 86 5.4E-16 T 29-03-2018 IPR010854 Domain of unknown function DUF1471 AM354_RS01195 92a5a07968c5326b5bf4936f8d12c260 308 Pfam PF02649 Type I GTP cyclohydrolase folE2 12 297 2.7E-66 T 29-03-2018 IPR003801 GTP cyclohydrolase FolE2/MptA GO:0003933 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852 AM354_RS01195 92a5a07968c5326b5bf4936f8d12c260 308 Hamap MF_01527_B GTP cyclohydrolase FolE2 [folE2]. 12 302 31.512 T 29-03-2018 IPR022838 GTP cyclohydrolase FolE2 GO:0003934|GO:0035998 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852 AM354_RS01195 92a5a07968c5326b5bf4936f8d12c260 308 Gene3D G3DSA:3.10.270.10 11 300 6.6E-79 T 29-03-2018 AM354_RS24065 3c7d9a92e06a7326ebf50cb4b8785d3f 429 Pfam PF13372 Alginate export 38 414 3.3E-77 T 29-03-2018 IPR025388 Alginate export domain AM354_RS24065 3c7d9a92e06a7326ebf50cb4b8785d3f 429 Gene3D G3DSA:2.40.160.10 32 429 1.9E-17 T 29-03-2018 AM354_RS04245 abfdd055c2aac4a91333999695179fdb 286 Gene3D G3DSA:1.10.3720.10 10 285 3.6E-44 T 29-03-2018 AM354_RS04245 abfdd055c2aac4a91333999695179fdb 286 SUPERFAMILY SSF161098 6 275 9.16E-54 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS04245 abfdd055c2aac4a91333999695179fdb 286 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 282 7.4E-19 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS12270 4f072a2a5fb0ad7c6c8707d89f11d476 91 Pfam PF07338 Protein of unknown function (DUF1471) 36 90 5.2E-14 T 29-03-2018 IPR010854 Domain of unknown function DUF1471 AM354_RS12270 4f072a2a5fb0ad7c6c8707d89f11d476 91 Gene3D G3DSA:3.30.1660.10 22 90 4.6E-14 T 29-03-2018 IPR025543 Dodecin-like AM354_RS12270 4f072a2a5fb0ad7c6c8707d89f11d476 91 SUPERFAMILY SSF159871 7 90 1.12E-15 T 29-03-2018 IPR010854 Domain of unknown function DUF1471 AM354_RS13000 c726cfd3387f5acf2e9525ab7f76c460 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 293 1.7E-19 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS13000 c726cfd3387f5acf2e9525ab7f76c460 295 SUPERFAMILY SSF161098 56 283 1.44E-52 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS13000 c726cfd3387f5acf2e9525ab7f76c460 295 Gene3D G3DSA:1.10.3720.10 13 295 8.9E-46 T 29-03-2018 AM354_RS02910 5352f0824979726eeb66cb0fa953c729 361 TIGRFAM TIGR01946 rnfD: electron transport complex, RnfABCDGE type, D subunit 19 360 5.1E-140 T 29-03-2018 IPR011303 Electron transport complex, subunit RnfD/RsxD GO:0016021|GO:0022900 AM354_RS02910 5352f0824979726eeb66cb0fa953c729 361 Hamap MF_00462 Electron transport complex subunit RsxD [rsxD]. 14 361 28.669 T 29-03-2018 IPR011303 Electron transport complex, subunit RnfD/RsxD GO:0016021|GO:0022900 AM354_RS02910 5352f0824979726eeb66cb0fa953c729 361 Pfam PF03116 NQR2, RnfD, RnfE family 16 359 2.1E-108 T 29-03-2018 IPR004338 NADH-quinone reductase NQR2/RnfD GO:0006810|GO:0016020 AM354_RS22035 599e67a2c027d4939e613f66e0d69b47 360 Pfam PF13360 PQQ-like domain 77 336 1.6E-5 T 29-03-2018 IPR002372 Pyrrolo-quinoline quinone repeat AM354_RS22035 599e67a2c027d4939e613f66e0d69b47 360 Gene3D G3DSA:2.130.10.10 40 358 7.8E-43 T 29-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AM354_RS22035 599e67a2c027d4939e613f66e0d69b47 360 SUPERFAMILY SSF51004 49 346 1.2E-38 T 29-03-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain AM354_RS15525 33d06c8a372b6dcb06be322cf1bbbe72 465 Pfam PF03611 PTS system sugar-specific permease component 15 411 4.7E-122 T 29-03-2018 IPR004703 Phosphotransferase system, sugar-specific permease component GO:0009401|GO:0016021 AM354_RS07950 d1818c335c09a443c0d6dd774c42ca6f 169 SUPERFAMILY SSF103088 56 168 3.01E-34 T 29-03-2018 IPR006665 OmpA-like domain AM354_RS07950 d1818c335c09a443c0d6dd774c42ca6f 169 ProSitePatterns PS01068 OmpA-like domain. 101 145 - T 29-03-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 AM354_RS07950 d1818c335c09a443c0d6dd774c42ca6f 169 Pfam PF00691 OmpA family 68 163 2.2E-21 T 29-03-2018 IPR006665 OmpA-like domain AM354_RS07950 d1818c335c09a443c0d6dd774c42ca6f 169 Gene3D G3DSA:3.30.1330.60 39 169 1.9E-34 T 29-03-2018 IPR006665 OmpA-like domain AM354_RS07950 d1818c335c09a443c0d6dd774c42ca6f 169 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 67 169 8.8E-47 T 29-03-2018 IPR014169 Peptidoglycan-associated lipoprotein GO:0009279 AM354_RS07950 d1818c335c09a443c0d6dd774c42ca6f 169 PRINTS PR01021 OMPA domain signature 99 114 1.0E-16 T 29-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AM354_RS07950 d1818c335c09a443c0d6dd774c42ca6f 169 PRINTS PR01021 OMPA domain signature 114 130 1.0E-16 T 29-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AM354_RS07950 d1818c335c09a443c0d6dd774c42ca6f 169 PRINTS PR01021 OMPA domain signature 69 91 1.0E-16 T 29-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AM354_RS10060 4b3a8b092474e7df0ff00a6ad3a83bb4 220 Pfam PF04338 Protein of unknown function, DUF481 15 219 1.6E-58 T 29-03-2018 IPR007433 Protein of unknown function DUF481 AM354_RS21290 5f279f9a3999d1d78db49ca28cdd185b 324 Pfam PF13413 Helix-turn-helix domain 18 79 7.2E-16 T 29-03-2018 AM354_RS21290 5f279f9a3999d1d78db49ca28cdd185b 324 Pfam PF13464 Domain of unknown function (DUF4115) 247 321 4.1E-25 T 29-03-2018 IPR025194 Domain of unknown function DUF4115 AM354_RS21290 5f279f9a3999d1d78db49ca28cdd185b 324 SUPERFAMILY SSF47413 11 80 2.95E-9 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS21290 5f279f9a3999d1d78db49ca28cdd185b 324 Hamap MF_02017 Cytoskeleton protein RodZ [rodZ]. 1 324 44.692 T 29-03-2018 IPR023690 Cytoskeleton protein RodZ GO:0008360|GO:0016021 AM354_RS21290 5f279f9a3999d1d78db49ca28cdd185b 324 Gene3D G3DSA:1.10.260.40 8 90 9.3E-13 T 29-03-2018 AM354_RS21290 5f279f9a3999d1d78db49ca28cdd185b 324 SMART SM00530 18 79 3.9E-5 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM354_RS14015 7b9971ed6c88455d372e2e1c8ecf572d 79 Pfam PF00137 ATP synthase subunit C 11 69 1.5E-9 T 29-03-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 AM354_RS14015 7b9971ed6c88455d372e2e1c8ecf572d 79 SUPERFAMILY SSF81333 3 77 6.93E-18 T 29-03-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 AM354_RS14015 7b9971ed6c88455d372e2e1c8ecf572d 79 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 20 77 1.9E-31 T 29-03-2018 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 AM354_RS14015 7b9971ed6c88455d372e2e1c8ecf572d 79 ProSitePatterns PS00605 ATP synthase c subunit signature. 40 61 - T 29-03-2018 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS14015 7b9971ed6c88455d372e2e1c8ecf572d 79 Hamap MF_01396 ATP synthase subunit c [atpH]. 10 75 14.323 T 29-03-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS14015 7b9971ed6c88455d372e2e1c8ecf572d 79 PRINTS PR00124 ATP synthase C subunit signature 12 31 1.6E-8 T 29-03-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS14015 7b9971ed6c88455d372e2e1c8ecf572d 79 PRINTS PR00124 ATP synthase C subunit signature 50 75 1.6E-8 T 29-03-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS14015 7b9971ed6c88455d372e2e1c8ecf572d 79 PRINTS PR00124 ATP synthase C subunit signature 33 48 1.6E-8 T 29-03-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM354_RS14015 7b9971ed6c88455d372e2e1c8ecf572d 79 Gene3D G3DSA:1.20.20.10 1 79 7.5E-16 T 29-03-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 AM354_RS16590 bcd77a358c5d082e166e46227c5b71a4 549 Pfam PF00999 Sodium/hydrogen exchanger family 8 421 4.4E-76 T 29-03-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AM354_RS16590 bcd77a358c5d082e166e46227c5b71a4 549 TIGRFAM TIGR00831 a_cpa1: Na+/H+ antiporter 7 546 5.9E-207 T 29-03-2018 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria GO:0006812|GO:0015299|GO:0016021 AM354_RS20290 f1be25f07a3027bb68daef323674403d 483 Gene3D G3DSA:1.20.1250.20 262 482 7.2E-10 T 29-03-2018 AM354_RS20290 f1be25f07a3027bb68daef323674403d 483 ProSitePatterns PS01022 PTR2 family proton/oligopeptide symporters signature 1. 64 88 - T 29-03-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 AM354_RS20290 f1be25f07a3027bb68daef323674403d 483 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 139 151 - T 29-03-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 AM354_RS20290 f1be25f07a3027bb68daef323674403d 483 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 6 451 6.8E-82 T 29-03-2018 IPR005279 Dipeptide/tripeptide permease GO:0015197|GO:0015833|GO:0016020 AM354_RS20290 f1be25f07a3027bb68daef323674403d 483 SUPERFAMILY SSF103473 4 193 3.66E-24 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS20290 f1be25f07a3027bb68daef323674403d 483 SUPERFAMILY SSF103473 202 475 2.88E-9 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS20290 f1be25f07a3027bb68daef323674403d 483 Gene3D G3DSA:1.20.1250.20 2 190 3.1E-26 T 29-03-2018 AM354_RS20290 f1be25f07a3027bb68daef323674403d 483 Pfam PF00854 POT family 77 438 3.4E-75 T 29-03-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-427975 AM354_RS23045 cc15c6310b3453a908288bbe19044edd 147 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 5 145 1.4E-35 T 29-03-2018 IPR002178 PTS EIIA type-2 domain AM354_RS23045 cc15c6310b3453a908288bbe19044edd 147 SUPERFAMILY SSF55804 2 145 8.24E-39 T 29-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 AM354_RS23045 cc15c6310b3453a908288bbe19044edd 147 Gene3D G3DSA:3.40.930.10 1 147 2.0E-35 T 29-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 AM354_RS16700 baa2ea9b1cae0469968222917a582c38 341 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 1 275 2.0E-116 T 29-03-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 AM354_RS16700 baa2ea9b1cae0469968222917a582c38 341 Pfam PF04085 rod shape-determining protein MreC 123 269 6.4E-37 T 29-03-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 AM354_RS16270 d26be67412548ee8f4a4792b95c1a651 445 PIRSF PIRSF002746 1 445 5.4E-142 T 29-03-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AM354_RS16270 d26be67412548ee8f4a4792b95c1a651 445 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 5 443 2.9E-147 T 29-03-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AM354_RS16270 d26be67412548ee8f4a4792b95c1a651 445 Pfam PF02447 GntP family permease 5 440 3.4E-144 T 29-03-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AM354_RS18155 f9a5476ed9a47a4ba1c3c5c9b2f62eab 181 Gene3D G3DSA:2.60.40.1090 28 181 1.1E-35 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS18155 f9a5476ed9a47a4ba1c3c5c9b2f62eab 181 SUPERFAMILY SSF49401 29 181 1.59E-37 T 29-03-2018 IPR008966 Adhesion domain AM354_RS18155 f9a5476ed9a47a4ba1c3c5c9b2f62eab 181 Pfam PF00419 Fimbrial protein 31 181 3.6E-18 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS14520 c6d545e58b8c4a5a7dc15b82ac8cb0bb 139 Pfam PF05656 Protein of unknown function (DUF805) 7 132 3.8E-22 T 29-03-2018 IPR008523 Protein of unknown function DUF805 GO:0016021 AM354_RS07430 f504d5bd2a9af63f10529a89fdf4914f 384 SUPERFAMILY SSF53383 11 383 1.99E-100 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS07430 f504d5bd2a9af63f10529a89fdf4914f 384 Gene3D G3DSA:3.40.640.10 44 270 3.5E-56 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS07430 f504d5bd2a9af63f10529a89fdf4914f 384 Pfam PF00155 Aminotransferase class I and II 32 381 2.7E-62 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM354_RS07430 f504d5bd2a9af63f10529a89fdf4914f 384 Gene3D G3DSA:3.90.1150.10 271 384 4.1E-24 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS07370 d267ad09b1cfb21b50e33f62a1be4c5c 174 Gene3D G3DSA:1.10.10.10 7 155 2.2E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS07370 d267ad09b1cfb21b50e33f62a1be4c5c 174 Pfam PF13463 Winged helix DNA-binding domain 35 102 7.0E-8 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM354_RS07370 d267ad09b1cfb21b50e33f62a1be4c5c 174 SMART SM00347 28 129 5.6E-13 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM354_RS07370 d267ad09b1cfb21b50e33f62a1be4c5c 174 SUPERFAMILY SSF46785 6 144 7.87E-25 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS04155 74f78dc5391cb2104a15b15e4b313e80 208 Gene3D G3DSA:3.30.70.1560 110 193 4.6E-24 T 29-03-2018 AM354_RS04155 74f78dc5391cb2104a15b15e4b313e80 208 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 35 206 1.7E-57 T 29-03-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 AM354_RS04155 74f78dc5391cb2104a15b15e4b313e80 208 Gene3D G3DSA:3.30.70.580 28 109 9.5E-14 T 29-03-2018 AM354_RS04155 74f78dc5391cb2104a15b15e4b313e80 208 SUPERFAMILY SSF55120 30 205 1.02E-40 T 29-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS04155 74f78dc5391cb2104a15b15e4b313e80 208 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 66 80 - T 29-03-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 AM354_RS04155 74f78dc5391cb2104a15b15e4b313e80 208 Pfam PF00849 RNA pseudouridylate synthase 61 176 1.6E-11 T 29-03-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS20835 d7c8a20c2389bb45c8857ce94218e9ec 100 ProDom PD064783 PHAGE HOLIN LYSIS P2 MEMBRANE GPY Y TRANSMEMBRANE HOMOLOG INNER 1 89 5.0E-19 T 29-03-2018 IPR007633 Bacteriophage P2, GpY, holin AM354_RS20835 d7c8a20c2389bb45c8857ce94218e9ec 100 Pfam PF04550 Phage holin family 2 1 86 1.4E-37 T 29-03-2018 IPR007633 Bacteriophage P2, GpY, holin AM354_RS07050 6704a6024b5f2d1090e045c2702dd16e 214 SUPERFAMILY SSF52499 3 204 4.71E-47 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM354_RS07050 6704a6024b5f2d1090e045c2702dd16e 214 Gene3D G3DSA:3.40.50.850 1 208 1.2E-32 T 29-03-2018 AM354_RS07050 6704a6024b5f2d1090e045c2702dd16e 214 Pfam PF00857 Isochorismatase family 12 165 2.5E-22 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM354_RS16670 30c3fdf0a2a8c7276b295bc697d7ac8a 150 SUPERFAMILY SSF52304 6 148 6.28E-63 T 29-03-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AM354_RS16670 30c3fdf0a2a8c7276b295bc697d7ac8a 150 Pfam PF01220 Dehydroquinase class II 7 142 2.6E-62 T 29-03-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AM354_RS16670 30c3fdf0a2a8c7276b295bc697d7ac8a 150 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 21 149 1.0E-61 T 29-03-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AM354_RS16670 30c3fdf0a2a8c7276b295bc697d7ac8a 150 Gene3D G3DSA:3.40.50.9100 2 149 4.4E-69 T 29-03-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AM354_RS16670 30c3fdf0a2a8c7276b295bc697d7ac8a 150 PIRSF PIRSF001399 3 149 1.5E-60 T 29-03-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AM354_RS16670 30c3fdf0a2a8c7276b295bc697d7ac8a 150 ProSitePatterns PS01029 Dehydroquinase class II signature. 10 27 - T 29-03-2018 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AM354_RS16670 30c3fdf0a2a8c7276b295bc697d7ac8a 150 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 150 75.363 T 29-03-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AM354_RS16670 30c3fdf0a2a8c7276b295bc697d7ac8a 150 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 6 145 4.1E-63 T 29-03-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AM354_RS06205 c8ee99355bbc79ceea669d5f7f8b4976 258 Pfam PF00977 Histidine biosynthesis protein 5 239 8.8E-79 T 29-03-2018 IPR006062 Histidine biosynthesis GO:0000105 AM354_RS06205 c8ee99355bbc79ceea669d5f7f8b4976 258 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 256 45.128 T 29-03-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 AM354_RS06205 c8ee99355bbc79ceea669d5f7f8b4976 258 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 1 256 2.4E-117 T 29-03-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 AM354_RS06205 c8ee99355bbc79ceea669d5f7f8b4976 258 SUPERFAMILY SSF51366 1 257 1.02E-74 T 29-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 AM354_RS06205 c8ee99355bbc79ceea669d5f7f8b4976 258 Gene3D G3DSA:3.20.20.70 4 252 6.2E-59 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS04050 112a1014f155b70d8a5f87c2a70ed4ab 265 SMART SM01252 8 104 4.3E-28 T 29-03-2018 IPR018004 KilA, N-terminal/APSES-type HTH, DNA-binding AM354_RS04050 112a1014f155b70d8a5f87c2a70ed4ab 265 Pfam PF04383 KilA-N domain 9 100 1.5E-18 T 29-03-2018 IPR018004 KilA, N-terminal/APSES-type HTH, DNA-binding AM354_RS03575 9ed820b6989c39d74335e8c69ac7d4ce 165 SUPERFAMILY SSF55781 2 151 8.1E-41 T 29-03-2018 IPR029016 GAF domain-like AM354_RS03575 9ed820b6989c39d74335e8c69ac7d4ce 165 Gene3D G3DSA:3.30.450.40 2 156 2.1E-25 T 29-03-2018 IPR029016 GAF domain-like AM354_RS03575 9ed820b6989c39d74335e8c69ac7d4ce 165 SMART SM00065 9 161 3.8E-6 T 29-03-2018 IPR003018 GAF domain GO:0005515 AM354_RS03575 9ed820b6989c39d74335e8c69ac7d4ce 165 Pfam PF13185 GAF domain 37 144 1.9E-10 T 29-03-2018 IPR003018 GAF domain GO:0005515 AM354_RS11605 c84548894e983e9dd11cb2658eb8d1f8 952 Pfam PF10593 Z1 domain 437 670 4.2E-82 T 29-03-2018 IPR018310 Putative endonuclease, Z1 domain AM354_RS11605 c84548894e983e9dd11cb2658eb8d1f8 952 Gene3D G3DSA:3.40.50.300 101 353 5.4E-4 T 29-03-2018 AM354_RS10250 4b3e07699661adc183c0e65b5173b34b 338 Pfam PF01476 LysM domain 83 124 4.9E-10 T 29-03-2018 IPR018392 LysM domain AM354_RS10250 4b3e07699661adc183c0e65b5173b34b 338 Pfam PF01551 Peptidase family M23 238 331 5.6E-32 T 29-03-2018 IPR016047 Peptidase M23 AM354_RS10250 4b3e07699661adc183c0e65b5173b34b 338 SMART SM00257 82 126 1.9E-10 T 29-03-2018 IPR018392 LysM domain AM354_RS10250 4b3e07699661adc183c0e65b5173b34b 338 Gene3D G3DSA:2.70.70.10 158 338 1.4E-40 T 29-03-2018 AM354_RS10250 4b3e07699661adc183c0e65b5173b34b 338 Gene3D G3DSA:3.10.350.10 70 157 7.7E-13 T 29-03-2018 AM354_RS10250 4b3e07699661adc183c0e65b5173b34b 338 SUPERFAMILY SSF51261 83 335 2.3E-51 T 29-03-2018 IPR011055 Duplicated hybrid motif AM354_RS19400 be01e62359357303d4c0c3c16d20435a 205 Hamap MF_01901 Arginine exporter protein ArgO [argO]. 1 205 39.048 T 29-03-2018 IPR023445 Arginine exporter protein ArgO, enterobacteria GO:0015181|GO:0015809 AM354_RS19400 be01e62359357303d4c0c3c16d20435a 205 TIGRFAM TIGR00948 2a75: L-lysine exporter 15 191 1.9E-68 T 29-03-2018 IPR004777 L-lysine exporter/arginine exporter GO:0016021 AM354_RS19400 be01e62359357303d4c0c3c16d20435a 205 Pfam PF01810 LysE type translocator 14 201 3.3E-53 T 29-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AM354_RS00045 716c5505f58ca8d4297a4332a3f627c7 148 SUPERFAMILY SSF55811 3 142 2.17E-23 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 AM354_RS00045 716c5505f58ca8d4297a4332a3f627c7 148 PRINTS PR01404 DATP pyrophosphohydrolase signature 126 139 1.3E-44 T 29-03-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 AM354_RS00045 716c5505f58ca8d4297a4332a3f627c7 148 PRINTS PR01404 DATP pyrophosphohydrolase signature 20 41 1.3E-44 T 29-03-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 AM354_RS00045 716c5505f58ca8d4297a4332a3f627c7 148 PRINTS PR01404 DATP pyrophosphohydrolase signature 3 20 1.3E-44 T 29-03-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 AM354_RS00045 716c5505f58ca8d4297a4332a3f627c7 148 PRINTS PR01404 DATP pyrophosphohydrolase signature 71 90 1.3E-44 T 29-03-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 AM354_RS00045 716c5505f58ca8d4297a4332a3f627c7 148 PRINTS PR01404 DATP pyrophosphohydrolase signature 99 120 1.3E-44 T 29-03-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 AM354_RS00045 716c5505f58ca8d4297a4332a3f627c7 148 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 29-03-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AM354_RS00045 716c5505f58ca8d4297a4332a3f627c7 148 Pfam PF00293 NUDIX domain 5 140 1.2E-16 T 29-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AM354_RS00045 716c5505f58ca8d4297a4332a3f627c7 148 Gene3D G3DSA:3.90.79.10 1 147 4.2E-29 T 29-03-2018 AM354_RS09800 7e96d06c73585ba13a22f7faf9f7e690 172 Pfam PF14113 Type VI secretion system (T6SS), amidase effector protein 4 32 169 1.4E-27 T 29-03-2018 IPR025562 Type VI secretion system (T6SS), amidase effector protein 4 AM354_RS16405 967ae3a00f6380817f9fe7e749b3aaad 323 SUPERFAMILY SSF51445 11 52 6.1E-7 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily AM354_RS16405 967ae3a00f6380817f9fe7e749b3aaad 323 Gene3D G3DSA:3.20.20.80 95 276 6.5E-20 T 29-03-2018 AM354_RS16405 967ae3a00f6380817f9fe7e749b3aaad 323 Gene3D G3DSA:3.20.20.80 11 57 2.9E-7 T 29-03-2018 AM354_RS16405 967ae3a00f6380817f9fe7e749b3aaad 323 SUPERFAMILY SSF51445 119 235 6.24E-15 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily AM354_RS16405 967ae3a00f6380817f9fe7e749b3aaad 323 Pfam PF00128 Alpha amylase, catalytic domain 97 168 7.9E-5 T 29-03-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AM354_RS18370 6bafc9dc31f9835125c901dde83887a2 219 TIGRFAM TIGR03746 conj_TIGR03746: integrating conjugative element protein, PFL_4703 family 4 204 5.0E-96 T 29-03-2018 IPR021548 Protein of unknown function DUF2895 AM354_RS18370 6bafc9dc31f9835125c901dde83887a2 219 Pfam PF11444 Protein of unknown function (DUF2895) 6 203 3.4E-91 T 29-03-2018 IPR021548 Protein of unknown function DUF2895 AM354_RS21110 f4b69d73614e26ebde46721114afb783 290 Pfam PF13942 YfhG lipoprotein 64 237 2.2E-79 T 29-03-2018 IPR025262 Quorum-sensing regulator protein G AM354_RS21110 f4b69d73614e26ebde46721114afb783 290 ProDom PD117379 LIPOPROTEIN YFHG HELIX ALPHA REGULATOR MEMBRANE TRANSCRIPTIONAL FAMILIIY EBP TWO-COMPONENT 20 239 2.0E-64 T 29-03-2018 AM354_RS07695 49f10fb68fc770ce27751a21884cd8d0 159 Gene3D G3DSA:3.30.70.640 2 158 3.5E-68 T 29-03-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 Reactome: R-HSA-947581 AM354_RS07695 49f10fb68fc770ce27751a21884cd8d0 159 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase accessory protein [moaC]. 2 158 36.27 T 29-03-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 Reactome: R-HSA-947581 AM354_RS07695 49f10fb68fc770ce27751a21884cd8d0 159 Pfam PF01967 MoaC family 15 150 2.4E-54 T 29-03-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 Reactome: R-HSA-947581 AM354_RS07695 49f10fb68fc770ce27751a21884cd8d0 159 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 4 152 1.6E-71 T 29-03-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 Reactome: R-HSA-947581 AM354_RS07695 49f10fb68fc770ce27751a21884cd8d0 159 SUPERFAMILY SSF55040 11 155 5.49E-61 T 29-03-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 Reactome: R-HSA-947581 AM354_RS19825 a520948edb15d8b06c947f46c52c635a 175 Gene3D G3DSA:2.60.40.1090 29 175 2.9E-27 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS19825 a520948edb15d8b06c947f46c52c635a 175 SUPERFAMILY SSF49401 30 175 4.97E-24 T 29-03-2018 IPR008966 Adhesion domain AM354_RS18615 a8e60c53478afac9592dfec941185259 142 Pfam PF03960 ArsC family 7 114 1.7E-19 T 29-03-2018 IPR006660 Arsenate reductase-like AM354_RS18615 a8e60c53478afac9592dfec941185259 142 SUPERFAMILY SSF52833 3 137 1.91E-39 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS18615 a8e60c53478afac9592dfec941185259 142 Gene3D G3DSA:3.40.30.10 1 141 4.2E-45 T 29-03-2018 AM354_RS18615 a8e60c53478afac9592dfec941185259 142 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 4 116 1.4E-42 T 29-03-2018 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 AM354_RS15460 86a41d133dcc3d0c58bd6805ca86cf8e 197 Pfam PF01914 MarC family integral membrane protein 2 194 9.5E-59 T 29-03-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 AM354_RS15460 86a41d133dcc3d0c58bd6805ca86cf8e 197 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 5 191 5.4E-31 T 29-03-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 AM354_RS15065 03362d080f3f39bb648547f07cee2ebb 492 Pfam PF04984 Phage tail sheath protein subtilisin-like domain 206 366 1.2E-20 T 29-03-2018 IPR035089 Tail sheath protein, subtilisin-like domain AM354_RS15065 03362d080f3f39bb648547f07cee2ebb 492 PIRSF PIRSF007349 1 492 1.4E-160 T 29-03-2018 IPR007067 Tail sheath protein AM354_RS15065 03362d080f3f39bb648547f07cee2ebb 492 Pfam PF17482 Phage tail sheath C-terminal domain 374 491 2.1E-17 T 29-03-2018 IPR020287 Tail sheath protein, C-terminal domain AM354_RS20570 9ddba764cc633316a21f1914bb449bf4 148 ProDom PD093913 YICN MEMBRANE INNER EXPORTED 1 144 4.0E-48 T 29-03-2018 IPR009587 Protein of unknown function DUF1198 AM354_RS20570 9ddba764cc633316a21f1914bb449bf4 148 Pfam PF06711 Protein of unknown function (DUF1198) 1 142 3.5E-63 T 29-03-2018 IPR009587 Protein of unknown function DUF1198 AM354_RS06925 97b70b71381ad6dff67b17962bc30806 144 Pfam PF13412 Winged helix-turn-helix DNA-binding 1 48 6.1E-15 T 29-03-2018 AM354_RS06925 97b70b71381ad6dff67b17962bc30806 144 Pfam PF01037 Lrp/AsnC ligand binding domain 67 131 7.8E-15 T 29-03-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AM354_RS06925 97b70b71381ad6dff67b17962bc30806 144 Gene3D G3DSA:1.10.10.10 1 50 1.2E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS06925 97b70b71381ad6dff67b17962bc30806 144 SUPERFAMILY SSF46785 1 61 7.49E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS06925 97b70b71381ad6dff67b17962bc30806 144 SMART SM00344 1 107 1.3E-33 T 29-03-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AM354_RS06925 97b70b71381ad6dff67b17962bc30806 144 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 4.5E-14 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 AM354_RS06925 97b70b71381ad6dff67b17962bc30806 144 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 4.5E-14 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 AM354_RS06925 97b70b71381ad6dff67b17962bc30806 144 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 4.5E-14 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 AM354_RS06925 97b70b71381ad6dff67b17962bc30806 144 SUPERFAMILY SSF54909 66 136 4.16E-15 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel AM354_RS06925 97b70b71381ad6dff67b17962bc30806 144 Gene3D G3DSA:3.30.70.920 51 139 5.8E-16 T 29-03-2018 AM354_RS21510 e29ab04a3b7ee6f13ef012c2ee3ec456 561 Pfam PF12236 Bacteriophage head to tail connecting protein 17 502 6.1E-148 T 29-03-2018 IPR020991 Head-to-tail connector protein, podovirus-type AM354_RS20575 b3752dcd67c80b718c17e53ce309f43f 111 Gene3D G3DSA:1.20.5.170 2 101 9.2E-4 T 29-03-2018 AM354_RS20575 b3752dcd67c80b718c17e53ce309f43f 111 Pfam PF04899 MbeD/MobD like 3 61 8.3E-9 T 29-03-2018 IPR006983 MbeD/MobD-like AM354_RS03425 75d0653ba5f7dcc33f839ea5f4fcdbd2 229 Pfam PF01914 MarC family integral membrane protein 8 221 7.0E-65 T 29-03-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 AM354_RS03425 75d0653ba5f7dcc33f839ea5f4fcdbd2 229 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 9 217 9.2E-35 T 29-03-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 AM354_RS18115 2d466cfaabed8cacbb9316c9cd4d3123 229 Pfam PF00196 Bacterial regulatory proteins, luxR family 154 203 2.2E-9 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS18115 2d466cfaabed8cacbb9316c9cd4d3123 229 Gene3D G3DSA:1.10.10.10 105 213 3.4E-10 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS18115 2d466cfaabed8cacbb9316c9cd4d3123 229 SMART SM00421 151 208 3.1E-4 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS18115 2d466cfaabed8cacbb9316c9cd4d3123 229 SUPERFAMILY SSF46894 145 209 3.4E-13 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS22840 771f2f9dcffbdb5bbfadffa0ea8c22d8 370 Pfam PF03600 Citrate transporter 24 313 1.4E-23 T 29-03-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 AM354_RS01045 412fd15a27a6ec15ecd0eb185048a153 1153 Pfam PF13332 Haemagluttinin repeat 358 533 6.6E-44 T 29-03-2018 IPR025157 Hemagglutinin repeat AM354_RS01045 412fd15a27a6ec15ecd0eb185048a153 1153 Pfam PF13332 Haemagluttinin repeat 104 250 2.9E-10 T 29-03-2018 IPR025157 Hemagglutinin repeat AM354_RS01045 412fd15a27a6ec15ecd0eb185048a153 1153 Pfam PF14076 Domain of unknown function (DUF4258) 1091 1149 4.9E-7 T 29-03-2018 IPR025354 Protein of unknown function DUF4258 AM354_RS01045 412fd15a27a6ec15ecd0eb185048a153 1153 Pfam PF04829 Pre-toxin domain with VENN motif 880 930 4.7E-21 T 29-03-2018 IPR006914 VENN motif-containing domain AM354_RS17670 1493d6ac1081d5384b5e93546a86090c 318 Gene3D G3DSA:1.10.3470.10 1 318 2.3E-71 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS17670 1493d6ac1081d5384b5e93546a86090c 318 Pfam PF01032 FecCD transport family 14 316 5.9E-95 T 29-03-2018 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 AM354_RS17670 1493d6ac1081d5384b5e93546a86090c 318 SUPERFAMILY SSF81345 3 316 1.27E-81 T 29-03-2018 IPR029022 ABC transporter, BtuC-like AM354_RS20620 ca059ca754aa46f2a1c61fe4f95cb873 244 SUPERFAMILY SSF53335 5 234 1.02E-42 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS20620 ca059ca754aa46f2a1c61fe4f95cb873 244 Pfam PF08241 Methyltransferase domain 47 141 5.6E-22 T 29-03-2018 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AM354_RS20620 ca059ca754aa46f2a1c61fe4f95cb873 244 Gene3D G3DSA:3.40.50.150 26 242 1.0E-49 T 29-03-2018 AM354_RS09670 62cc1a9a08be25d38781c3871c81c9e4 397 Gene3D G3DSA:1.20.1250.20 11 200 2.7E-25 T 29-03-2018 AM354_RS09670 62cc1a9a08be25d38781c3871c81c9e4 397 Gene3D G3DSA:1.20.1250.20 201 395 8.7E-18 T 29-03-2018 AM354_RS09670 62cc1a9a08be25d38781c3871c81c9e4 397 SUPERFAMILY SSF103473 8 393 2.75E-54 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS09670 62cc1a9a08be25d38781c3871c81c9e4 397 Pfam PF07690 Major Facilitator Superfamily 24 355 7.4E-28 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS21715 72e6d9b69b79dab8877d9e4557442f2a 204 SUPERFAMILY SSF46689 12 91 2.15E-14 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS21715 72e6d9b69b79dab8877d9e4557442f2a 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 24 70 6.9E-10 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS21715 72e6d9b69b79dab8877d9e4557442f2a 204 Gene3D G3DSA:1.10.357.10 5 199 6.8E-23 T 29-03-2018 AM354_RS22380 25c708b78c33baa6a8d3688a0ecc7f07 182 Pfam PF06042 Nucleotidyltransferase 23 178 1.0E-57 T 29-03-2018 IPR009267 Putative nucleotidyltransferase AM354_RS02300 001599921c0cbfcb112c26cd33d685e8 429 Pfam PF00753 Metallo-beta-lactamase superfamily 160 346 1.5E-19 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS02300 001599921c0cbfcb112c26cd33d685e8 429 Gene3D G3DSA:3.60.15.10 149 427 1.5E-45 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS02300 001599921c0cbfcb112c26cd33d685e8 429 Gene3D G3DSA:3.90.190.10 1 148 1.1E-12 T 29-03-2018 IPR029021 Protein-tyrosine phosphatase-like AM354_RS02300 001599921c0cbfcb112c26cd33d685e8 429 SUPERFAMILY SSF52799 8 141 1.91E-10 T 29-03-2018 IPR029021 Protein-tyrosine phosphatase-like AM354_RS02300 001599921c0cbfcb112c26cd33d685e8 429 SUPERFAMILY SSF56281 152 391 1.76E-42 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS02300 001599921c0cbfcb112c26cd33d685e8 429 Pfam PF04273 Putative phosphatase (DUF442) 3 109 8.8E-20 T 29-03-2018 IPR005939 Beta-lactamase hydrolase-like GO:0016787 AM354_RS02300 001599921c0cbfcb112c26cd33d685e8 429 SMART SM00849 157 346 1.4E-18 T 29-03-2018 IPR001279 Metallo-beta-lactamase AM354_RS07965 aa7cf6832da46f74d317378391482fe9 142 Pfam PF02472 Biopolymer transport protein ExbD/TolR 10 141 2.2E-24 T 29-03-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 AM354_RS24515 2889d82e92796f32ba463e5c46237271 841 Pfam PF00577 Outer membrane usher protein 199 749 1.3E-191 T 29-03-2018 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 AM354_RS24515 2889d82e92796f32ba463e5c46237271 841 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 316 326 - T 29-03-2018 IPR018030 Fimbrial membrane usher, conserved site AM354_RS24515 2889d82e92796f32ba463e5c46237271 841 Pfam PF13953 PapC C-terminal domain 761 817 1.4E-14 T 29-03-2018 IPR025949 PapC-like, C-terminal domain AM354_RS24515 2889d82e92796f32ba463e5c46237271 841 Pfam PF13954 PapC N-terminal domain 37 182 1.1E-39 T 29-03-2018 IPR025885 PapC, N-terminal domain GO:0005515 AM354_RS24515 2889d82e92796f32ba463e5c46237271 841 SUPERFAMILY SSF141729 36 156 5.23E-32 T 29-03-2018 AM354_RS22075 5db7fe7051b16c9f79edb3fa037fcda8 237 ProSitePatterns PS01057 SAICAR synthetase signature 1. 86 100 - T 29-03-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AM354_RS22075 5db7fe7051b16c9f79edb3fa037fcda8 237 ProSitePatterns PS01058 SAICAR synthetase signature 2. 173 181 - T 29-03-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AM354_RS22075 5db7fe7051b16c9f79edb3fa037fcda8 237 Pfam PF01259 SAICAR synthetase 7 231 5.9E-58 T 29-03-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AM354_RS22075 5db7fe7051b16c9f79edb3fa037fcda8 237 Gene3D G3DSA:3.30.470.20 94 220 3.9E-43 T 29-03-2018 AM354_RS22075 5db7fe7051b16c9f79edb3fa037fcda8 237 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 3 235 1.3E-80 T 29-03-2018 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 AM354_RS22075 5db7fe7051b16c9f79edb3fa037fcda8 237 Gene3D G3DSA:3.30.200.20 1 93 4.3E-24 T 29-03-2018 AM354_RS22075 5db7fe7051b16c9f79edb3fa037fcda8 237 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 4 234 29.009 T 29-03-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AM354_RS22075 5db7fe7051b16c9f79edb3fa037fcda8 237 SUPERFAMILY SSF56104 2 232 1.44E-75 T 29-03-2018 AM354_RS21840 f9bdb9db9071aba4165fcdedd340a94d 205 Gene3D G3DSA:2.30.110.10 26 175 3.1E-28 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 AM354_RS21840 f9bdb9db9071aba4165fcdedd340a94d 205 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 31 122 7.9E-16 T 29-03-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AM354_RS21840 f9bdb9db9071aba4165fcdedd340a94d 205 TIGRFAM TIGR04025 PPOX_FMN_DR2398: pyridoxamine 5'-phosphate oxidase, FMN-binding family 11 205 5.4E-78 T 29-03-2018 IPR024029 Pyridoxamine 5-phosphate oxidase, FMN-dependent AM354_RS21840 f9bdb9db9071aba4165fcdedd340a94d 205 SUPERFAMILY SSF50475 30 177 1.22E-21 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 AM354_RS16950 0db4fbbe2fe38ee9cf83da33e3b98dc7 260 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 5 258 4.3E-104 T 29-03-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria AM354_RS16950 0db4fbbe2fe38ee9cf83da33e3b98dc7 260 Pfam PF02405 Permease MlaE 45 256 7.4E-76 T 29-03-2018 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 AM354_RS14210 71d10860324d47a0792ecea70b7de45b 196 Pfam PF13419 Haloacid dehalogenase-like hydrolase 79 184 2.2E-9 T 29-03-2018 IPR023214 HAD-like domain AM354_RS14210 71d10860324d47a0792ecea70b7de45b 196 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 69 184 1.0E-16 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS14210 71d10860324d47a0792ecea70b7de45b 196 Gene3D G3DSA:3.40.50.1000 74 195 2.8E-21 T 29-03-2018 IPR023214 HAD-like domain AM354_RS14210 71d10860324d47a0792ecea70b7de45b 196 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 128 144 3.8E-6 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS14210 71d10860324d47a0792ecea70b7de45b 196 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 96 109 3.8E-6 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS14210 71d10860324d47a0792ecea70b7de45b 196 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 146 166 3.8E-6 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS14210 71d10860324d47a0792ecea70b7de45b 196 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 173 186 3.8E-6 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS14210 71d10860324d47a0792ecea70b7de45b 196 Gene3D G3DSA:1.10.150.240 14 73 5.6E-19 T 29-03-2018 IPR023198 Phosphoglycolate phosphatase, domain 2 AM354_RS14210 71d10860324d47a0792ecea70b7de45b 196 SUPERFAMILY SSF56784 3 191 1.44E-42 T 29-03-2018 IPR023214 HAD-like domain AM354_RS04920 da81a3124c2de30bc24653e420d7f24c 352 Pfam PF01594 AI-2E family transporter 14 328 1.9E-73 T 29-03-2018 IPR002549 Transmembrane protein TqsA-like AM354_RS25430 b5cf9ab3e1f822d2ac29e74a2b1b4203 453 SMART SM00382 173 356 6.7E-8 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS25430 b5cf9ab3e1f822d2ac29e74a2b1b4203 453 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 161 372 2.0E-70 T 29-03-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AM354_RS25430 b5cf9ab3e1f822d2ac29e74a2b1b4203 453 TIGRFAM TIGR03496 FliI_clade1: flagellar protein export ATPase FliI 29 451 3.6E-197 T 29-03-2018 IPR020005 Flagellar export ATPase FliI, clade 1 GO:0016887|GO:0044780|GO:0071973 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AM354_RS25430 b5cf9ab3e1f822d2ac29e74a2b1b4203 453 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 363 372 - T 29-03-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AM354_RS25430 b5cf9ab3e1f822d2ac29e74a2b1b4203 453 SUPERFAMILY SSF52540 108 378 1.69E-91 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS25430 b5cf9ab3e1f822d2ac29e74a2b1b4203 453 Gene3D G3DSA:3.40.50.300 60 372 3.4E-79 T 29-03-2018 AM354_RS25430 b5cf9ab3e1f822d2ac29e74a2b1b4203 453 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 7 452 1.0E-190 T 29-03-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AM354_RS12980 b05734fc9412adab74db168ae21ff031 318 Pfam PF03547 Membrane transport protein 169 310 2.7E-14 T 29-03-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 AM354_RS12980 b05734fc9412adab74db168ae21ff031 318 Pfam PF03547 Membrane transport protein 16 156 9.4E-13 T 29-03-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 AM354_RS04015 7a90d6e4259a54bc4530704bee7cda79 232 Pfam PF10544 T5orf172 domain 126 205 1.2E-10 T 29-03-2018 IPR018306 Bacteriophage T5, Orf172 DNA-binding AM354_RS04015 7a90d6e4259a54bc4530704bee7cda79 232 SMART SM00974 123 206 2.4E-9 T 29-03-2018 IPR018306 Bacteriophage T5, Orf172 DNA-binding AM354_RS02335 a2cda8681de5a58323f913618d537fbc 262 SUPERFAMILY SSF53335 16 254 3.61E-40 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS02335 a2cda8681de5a58323f913618d537fbc 262 Gene3D G3DSA:3.40.50.150 20 244 2.1E-24 T 29-03-2018 AM354_RS14425 b5c7550e44b80f59e9d27a0a89a046ac 315 Pfam PF04748 Divergent polysaccharide deacetylase 28 238 7.6E-76 T 29-03-2018 IPR006837 Divergent polysaccharide deacetylase AM354_RS14425 b5c7550e44b80f59e9d27a0a89a046ac 315 SUPERFAMILY SSF88713 24 238 5.78E-71 T 29-03-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AM354_RS14425 b5c7550e44b80f59e9d27a0a89a046ac 315 Gene3D G3DSA:3.20.20.370 17 241 1.6E-80 T 29-03-2018 AM354_RS09205 a3700596e742176ce261090d1b6b8710 156 SUPERFAMILY SSF52121 3 154 6.54E-59 T 29-03-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AM354_RS09205 a3700596e742176ce261090d1b6b8710 156 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 8 154 31.768 T 29-03-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AM354_RS09205 a3700596e742176ce261090d1b6b8710 156 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 13 151 3.0E-55 T 29-03-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AM354_RS09205 a3700596e742176ce261090d1b6b8710 156 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 14 150 1.2E-58 T 29-03-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AM354_RS09205 a3700596e742176ce261090d1b6b8710 156 Gene3D G3DSA:3.40.50.960 1 155 2.2E-62 T 29-03-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AM354_RS13330 63960cbb6f0596efabe23bdea0bde21b 376 PIRSF PIRSF000390 1 376 3.7E-118 T 29-03-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AM354_RS13330 63960cbb6f0596efabe23bdea0bde21b 376 Gene3D G3DSA:3.40.640.10 1 242 1.7E-48 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM354_RS13330 63960cbb6f0596efabe23bdea0bde21b 376 SUPERFAMILY SSF53383 2 375 5.78E-102 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM354_RS13330 63960cbb6f0596efabe23bdea0bde21b 376 Hamap MF_02026 dTDP-4-amino-4,6-dideoxygalactose transaminase [wecE]. 1 376 80.433 T 29-03-2018 IPR032894 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE GO:0009246|GO:0019180 MetaCyc: PWY-7315 AM354_RS13330 63960cbb6f0596efabe23bdea0bde21b 376 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 13 371 2.0E-85 T 29-03-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AM354_RS13330 63960cbb6f0596efabe23bdea0bde21b 376 Gene3D G3DSA:3.90.1150.10 243 376 1.1E-26 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM354_RS13330 63960cbb6f0596efabe23bdea0bde21b 376 TIGRFAM TIGR02379 ECA_wecE: TDP-4-keto-6-deoxy-D-glucose transaminase 1 375 2.9E-216 T 29-03-2018 IPR012749 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE-like MetaCyc: PWY-7315 AM354_RS20535 c03d71b48257ca3b57611a355a941269 102 Pfam PF05957 Bacterial protein of unknown function (DUF883) 11 102 7.5E-29 T 29-03-2018 IPR010279 Protein of unknown function DUF883, ElaB AM354_RS17425 0c67bcb2dcbe311f7fd2b6574e99ed64 244 Gene3D G3DSA:3.40.1130.10 32 244 2.2E-40 T 29-03-2018 AM354_RS17425 0c67bcb2dcbe311f7fd2b6574e99ed64 244 SUPERFAMILY SSF69593 2 238 4.58E-61 T 29-03-2018 AM354_RS17425 0c67bcb2dcbe311f7fd2b6574e99ed64 244 SMART SM00563 67 182 4.0E-38 T 29-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AM354_RS17425 0c67bcb2dcbe311f7fd2b6574e99ed64 244 Pfam PF01553 Acyltransferase 61 180 1.9E-32 T 29-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AM354_RS17425 0c67bcb2dcbe311f7fd2b6574e99ed64 244 TIGRFAM TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases 50 180 1.3E-47 T 29-03-2018 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase GO:0003841|GO:0008654|GO:0016020 KEGG: 00561+2.3.1.51|KEGG: 00564+2.3.1.51|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7417|MetaCyc: PWY-7587|MetaCyc: PWY-7589|MetaCyc: PWY-7782|Reactome: R-HSA-1483166 AM354_RS22490 46e7b64318a9fd0f3d1b25133a2bc201 324 SUPERFAMILY SSF49401 193 323 1.19E-22 T 29-03-2018 IPR008966 Adhesion domain AM354_RS22490 46e7b64318a9fd0f3d1b25133a2bc201 324 Gene3D G3DSA:2.60.40.1090 191 324 2.0E-26 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS22490 46e7b64318a9fd0f3d1b25133a2bc201 324 Pfam PF00419 Fimbrial protein 189 323 3.2E-13 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS14620 6b9c71bbaeefd256ac627209a7600672 878 Gene3D G3DSA:1.20.1440.90 273 374 1.1E-23 T 29-03-2018 AM354_RS14620 6b9c71bbaeefd256ac627209a7600672 878 SUPERFAMILY SSF51621 6 878 0.0 T 29-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AM354_RS14620 6b9c71bbaeefd256ac627209a7600672 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 244 259 5.7E-68 T 29-03-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AM354_RS14620 6b9c71bbaeefd256ac627209a7600672 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 534 554 5.7E-68 T 29-03-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AM354_RS14620 6b9c71bbaeefd256ac627209a7600672 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 132 145 5.7E-68 T 29-03-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AM354_RS14620 6b9c71bbaeefd256ac627209a7600672 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 185 201 5.7E-68 T 29-03-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AM354_RS14620 6b9c71bbaeefd256ac627209a7600672 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 385 405 5.7E-68 T 29-03-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AM354_RS14620 6b9c71bbaeefd256ac627209a7600672 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 708 734 5.7E-68 T 29-03-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AM354_RS14620 6b9c71bbaeefd256ac627209a7600672 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 576 605 5.7E-68 T 29-03-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AM354_RS14620 6b9c71bbaeefd256ac627209a7600672 878 Pfam PF00311 Phosphoenolpyruvate carboxylase 127 878 5.0E-292 T 29-03-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AM354_RS14620 6b9c71bbaeefd256ac627209a7600672 878 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 1 878 18.361 T 29-03-2018 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AM354_RS14620 6b9c71bbaeefd256ac627209a7600672 878 ProSitePatterns PS00781 Phosphoenolpyruvate carboxylase active site 1. 133 144 - T 29-03-2018 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AM354_RS14620 6b9c71bbaeefd256ac627209a7600672 878 Gene3D G3DSA:3.20.20.60 375 586 5.2E-11 T 29-03-2018 AM354_RS14620 6b9c71bbaeefd256ac627209a7600672 878 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 536 548 - T 29-03-2018 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AM354_RS21235 14067afef83337f7f4a06d1d492f9173 128 Gene3D G3DSA:3.90.1010.10 1 128 3.9E-52 T 29-03-2018 AM354_RS21235 14067afef83337f7f4a06d1d492f9173 128 TIGRFAM TIGR01999 iscU: FeS cluster assembly scaffold IscU 3 125 4.1E-70 T 29-03-2018 IPR011339 ISC system FeS cluster assembly, IscU scaffold GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 AM354_RS21235 14067afef83337f7f4a06d1d492f9173 128 Pfam PF01592 NifU-like N terminal domain 2 126 1.3E-56 T 29-03-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 AM354_RS21235 14067afef83337f7f4a06d1d492f9173 128 SUPERFAMILY SSF82649 1 125 3.14E-48 T 29-03-2018 AM354_RS06435 5aba1cbd4d1cd1a99b7f1e7cf666e5fb 336 Gene3D G3DSA:1.10.3470.10 31 331 9.4E-33 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS06435 5aba1cbd4d1cd1a99b7f1e7cf666e5fb 336 Pfam PF02653 Branched-chain amino acid transport system / permease component 41 325 7.0E-50 T 29-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AM354_RS12730 4b46e664f32f2b69c621ca78944290f8 148 Gene3D G3DSA:3.40.630.30 2 140 2.9E-20 T 29-03-2018 AM354_RS12730 4b46e664f32f2b69c621ca78944290f8 148 SUPERFAMILY SSF55729 5 136 5.23E-22 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS12730 4b46e664f32f2b69c621ca78944290f8 148 Pfam PF00583 Acetyltransferase (GNAT) family 40 128 1.9E-15 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS25475 9be22352d13f340bd0988741a02816ad 122 Pfam PF05400 Flagellar protein FliT 21 106 4.8E-22 T 29-03-2018 IPR008622 Flagellar protein FliT AM354_RS25475 9be22352d13f340bd0988741a02816ad 122 Hamap MF_01180 Flagellar protein FliT [fliT]. 1 120 26.269 T 29-03-2018 IPR008622 Flagellar protein FliT AM354_RS25475 9be22352d13f340bd0988741a02816ad 122 Gene3D G3DSA:1.20.58.380 5 90 1.1E-26 T 29-03-2018 AM354_RS13750 b9e606d42c4788f170a8b712a5ba1ef9 188 SUPERFAMILY SSF48150 5 185 3.36E-82 T 29-03-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 AM354_RS13750 b9e606d42c4788f170a8b712a5ba1ef9 188 Gene3D G3DSA:1.10.340.30 3 184 5.2E-85 T 29-03-2018 AM354_RS13750 b9e606d42c4788f170a8b712a5ba1ef9 188 Pfam PF03352 Methyladenine glycosylase 8 183 1.2E-81 T 29-03-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 AM354_RS13750 b9e606d42c4788f170a8b712a5ba1ef9 188 TIGRFAM TIGR00624 tag: DNA-3-methyladenine glycosylase I 4 184 1.5E-86 T 29-03-2018 IPR004597 DNA-3-methyladenine glycosylase I GO:0006284|GO:0008725 AM354_RS06455 dbf50e32471289a0fd44ffedd5350cf5 390 Pfam PF04235 Protein of unknown function (DUF418) 220 378 7.9E-46 T 29-03-2018 IPR007349 Domain of unknown function DUF418 AM354_RS07995 7fd8a831642d97da6e34dea539712981 522 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 7 501 1.1E-171 T 29-03-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 AM354_RS07995 7fd8a831642d97da6e34dea539712981 522 PIRSF PIRSF006446 1 522 8.4E-139 T 29-03-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 AM354_RS03510 0492cef5cc5c2dfb935bc721a82a83b2 465 SUPERFAMILY SSF118215 31 444 2.88E-97 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS03510 0492cef5cc5c2dfb935bc721a82a83b2 465 Gene3D G3DSA:1.10.3860.10 21 452 2.3E-97 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS03510 0492cef5cc5c2dfb935bc721a82a83b2 465 Pfam PF00375 Sodium:dicarboxylate symporter family 31 444 4.1E-104 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS03510 0492cef5cc5c2dfb935bc721a82a83b2 465 PRINTS PR00173 Glutamate-aspartate symporter signature 270 289 7.5E-27 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS03510 0492cef5cc5c2dfb935bc721a82a83b2 465 PRINTS PR00173 Glutamate-aspartate symporter signature 184 206 7.5E-27 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS03510 0492cef5cc5c2dfb935bc721a82a83b2 465 PRINTS PR00173 Glutamate-aspartate symporter signature 77 97 7.5E-27 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS03510 0492cef5cc5c2dfb935bc721a82a83b2 465 PRINTS PR00173 Glutamate-aspartate symporter signature 29 49 7.5E-27 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS03510 0492cef5cc5c2dfb935bc721a82a83b2 465 PRINTS PR00173 Glutamate-aspartate symporter signature 372 391 7.5E-27 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS03510 0492cef5cc5c2dfb935bc721a82a83b2 465 PRINTS PR00173 Glutamate-aspartate symporter signature 107 132 7.5E-27 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS03510 0492cef5cc5c2dfb935bc721a82a83b2 465 PRINTS PR00173 Glutamate-aspartate symporter signature 399 419 7.5E-27 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM354_RS20150 9122e8f0af70a4a813ef7b9c6bae3131 150 Pfam PF00258 Flavodoxin 6 133 3.1E-22 T 29-03-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 AM354_RS20150 9122e8f0af70a4a813ef7b9c6bae3131 150 Gene3D G3DSA:3.40.50.360 1 150 2.0E-27 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS20150 9122e8f0af70a4a813ef7b9c6bae3131 150 SUPERFAMILY SSF52218 1 148 1.54E-40 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS20150 9122e8f0af70a4a813ef7b9c6bae3131 150 PRINTS PR00369 Flavodoxin signature 108 127 1.7E-6 T 29-03-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 AM354_RS20150 9122e8f0af70a4a813ef7b9c6bae3131 150 PRINTS PR00369 Flavodoxin signature 84 94 1.7E-6 T 29-03-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 AM354_RS20150 9122e8f0af70a4a813ef7b9c6bae3131 150 PRINTS PR00369 Flavodoxin signature 53 64 1.7E-6 T 29-03-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 AM354_RS05625 77286b71f45613ea493d6b6ed163fd9a 60 SUPERFAMILY SSF158997 1 54 1.96E-20 T 29-03-2018 AM354_RS05625 77286b71f45613ea493d6b6ed163fd9a 60 Hamap MF_01187 UPF0434 protein YcaR [ycaR]. 1 54 27.502 T 29-03-2018 IPR005651 Uncharacterised protein family UPF0434/Trm112 AM354_RS05625 77286b71f45613ea493d6b6ed163fd9a 60 Gene3D G3DSA:2.20.25.10 8 60 2.1E-19 T 29-03-2018 AM354_RS05625 77286b71f45613ea493d6b6ed163fd9a 60 Pfam PF03966 Trm112p-like protein 2 41 4.3E-10 T 29-03-2018 IPR005651 Uncharacterised protein family UPF0434/Trm112 AM354_RS15045 c04c2af24362fad11cc47a117575396b 419 Pfam PF07157 DNA circularisation protein N-terminus 9 94 6.1E-29 T 29-03-2018 IPR009826 DNA circulation, N-terminal AM354_RS15045 c04c2af24362fad11cc47a117575396b 419 ProDom PD332323 CIRCULATION DNA PROTEIN TAIL/DNA PHAGE PROPHAGE VIRION FLUMU BACTERIOPHAGE MU-LIKE 9 123 3.0E-54 T 29-03-2018 IPR009826 DNA circulation, N-terminal AM354_RS20870 37d49aa64d73f3204fcd5ef820fbccc3 394 Pfam PF04865 Baseplate J-like protein 82 311 1.3E-33 T 29-03-2018 IPR006949 Baseplate protein J-like AM354_RS17945 11441c65b240b5f2637b1f56c765b0a8 278 Gene3D G3DSA:3.40.50.1820 1 275 3.0E-37 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS17945 11441c65b240b5f2637b1f56c765b0a8 278 SUPERFAMILY SSF53474 1 274 8.51E-83 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS17945 11441c65b240b5f2637b1f56c765b0a8 278 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 2 274 4.0E-120 T 29-03-2018 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801|Reactome: R-HSA-156590 AM354_RS17945 11441c65b240b5f2637b1f56c765b0a8 278 Pfam PF00756 Putative esterase 21 268 1.5E-70 T 29-03-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 AM354_RS09945 688c5958ed3fa00d0d9140e8959bee75 155 Pfam PF00075 RNase H 3 141 1.3E-52 T 29-03-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 AM354_RS09945 688c5958ed3fa00d0d9140e8959bee75 155 Gene3D G3DSA:3.30.420.10 1 154 1.1E-51 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS09945 688c5958ed3fa00d0d9140e8959bee75 155 SUPERFAMILY SSF53098 4 146 2.91E-57 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM354_RS09945 688c5958ed3fa00d0d9140e8959bee75 155 Hamap MF_00042 Ribonuclease H [rnhA]. 2 150 37.313 T 29-03-2018 IPR022892 Ribonuclease HI GO:0004523 AM354_RS23405 b24c7a66ae5750f95f07866f3b405ef1 151 Pfam PF16463 Phage tail tube protein family 11 147 7.1E-71 T 29-03-2018 IPR032493 Phage tail tube protein family AM354_RS10825 0bb5f42662645695dbb47532fb66bf03 287 Gene3D G3DSA:3.60.130.10 1 281 1.4E-54 T 29-03-2018 AM354_RS10825 0bb5f42662645695dbb47532fb66bf03 287 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 16 267 2.6E-44 T 29-03-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 AM354_RS10825 0bb5f42662645695dbb47532fb66bf03 287 SUPERFAMILY SSF51197 13 269 2.88E-60 T 29-03-2018 AM354_RS18645 2e613978fe846633ac09f28e24c2f4cd 124 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 4 121 17.553 T 29-03-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 AM354_RS18645 2e613978fe846633ac09f28e24c2f4cd 124 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 6 116 2.8E-23 T 29-03-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 AM354_RS18645 2e613978fe846633ac09f28e24c2f4cd 124 TIGRFAM TIGR00494 crcB: protein CrcB 5 119 2.0E-31 T 29-03-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 AM354_RS16940 b145a14401125a8fe07f0185c61f31f9 325 TIGRFAM TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog 2 312 4.1E-89 T 29-03-2018 IPR004481 Sodium/potassium/calcium exchanger Reactome: R-HSA-425561 AM354_RS16940 b145a14401125a8fe07f0185c61f31f9 325 Pfam PF01699 Sodium/calcium exchanger protein 4 144 1.6E-29 T 29-03-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 AM354_RS16940 b145a14401125a8fe07f0185c61f31f9 325 Pfam PF01699 Sodium/calcium exchanger protein 175 317 1.0E-28 T 29-03-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 AM354_RS21590 d2346b3cd7264379f9df2c63516e4322 272 TIGRFAM TIGR02681 phage_pRha: phage regulatory protein, Rha family 56 153 3.1E-23 T 29-03-2018 IPR014054 Bacteriophage regulatory protein, Rha family AM354_RS21590 d2346b3cd7264379f9df2c63516e4322 272 Pfam PF09669 Phage regulatory protein Rha (Phage_pRha) 65 149 1.5E-23 T 29-03-2018 IPR014054 Bacteriophage regulatory protein, Rha family AM354_RS23500 20d3deac5bb3ab050243079b46fb2b69 593 PIRSF PIRSF004950 6 593 7.7E-236 T 29-03-2018 IPR012159 Inner membrane protein YejM AM354_RS23500 20d3deac5bb3ab050243079b46fb2b69 593 Gene3D G3DSA:3.40.720.10 252 522 2.3E-34 T 29-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 AM354_RS23500 20d3deac5bb3ab050243079b46fb2b69 593 Pfam PF11893 Domain of unknown function (DUF3413) 6 251 1.7E-107 T 29-03-2018 IPR024588 Inner membrane protein YejM, N-terminal AM354_RS23500 20d3deac5bb3ab050243079b46fb2b69 593 SUPERFAMILY SSF53649 256 556 1.64E-54 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AM354_RS23500 20d3deac5bb3ab050243079b46fb2b69 593 Pfam PF00884 Sulfatase 261 507 1.6E-30 T 29-03-2018 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 AM354_RS13610 411553217816f3b09db54862665b4ae1 415 Gene3D G3DSA:1.20.1250.20 205 406 1.3E-11 T 29-03-2018 AM354_RS13610 411553217816f3b09db54862665b4ae1 415 SUPERFAMILY SSF103473 7 403 4.84E-51 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS13610 411553217816f3b09db54862665b4ae1 415 Gene3D G3DSA:1.20.1250.20 8 199 9.9E-27 T 29-03-2018 AM354_RS13610 411553217816f3b09db54862665b4ae1 415 Pfam PF07690 Major Facilitator Superfamily 25 361 1.3E-29 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS18920 5b44b68a7e3acf32e54cfdf33e6884b9 194 SUPERFAMILY SSF53448 1 190 4.16E-19 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS18920 5b44b68a7e3acf32e54cfdf33e6884b9 194 Pfam PF12804 MobA-like NTP transferase domain 6 166 2.3E-24 T 29-03-2018 IPR025877 MobA-like NTP transferase AM354_RS18920 5b44b68a7e3acf32e54cfdf33e6884b9 194 Gene3D G3DSA:3.90.550.10 1 186 1.2E-23 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS07210 811800d95cd376687baa687ae34b9ff7 175 SUPERFAMILY SSF52499 2 172 3.79E-43 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM354_RS07210 811800d95cd376687baa687ae34b9ff7 175 Pfam PF00857 Isochorismatase family 3 139 4.7E-34 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM354_RS07210 811800d95cd376687baa687ae34b9ff7 175 Gene3D G3DSA:3.40.50.850 1 175 1.9E-40 T 29-03-2018 AM354_RS10095 425d8ef1bf03139aa3ba301b758f37b8 82 Pfam PF00886 Ribosomal protein S16 8 68 8.0E-24 T 29-03-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS10095 425d8ef1bf03139aa3ba301b758f37b8 82 SUPERFAMILY SSF54565 1 76 1.16E-28 T 29-03-2018 IPR023803 Ribosomal protein S16 domain Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS10095 425d8ef1bf03139aa3ba301b758f37b8 82 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 79 6.8E-29 T 29-03-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS10095 425d8ef1bf03139aa3ba301b758f37b8 82 ProSitePatterns PS00732 Ribosomal protein S16 signature. 2 11 - T 29-03-2018 IPR020592 Ribosomal protein S16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM354_RS10095 425d8ef1bf03139aa3ba301b758f37b8 82 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 78 23.845 T 29-03-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS10095 425d8ef1bf03139aa3ba301b758f37b8 82 Gene3D G3DSA:3.30.1320.10 1 79 2.6E-31 T 29-03-2018 IPR023803 Ribosomal protein S16 domain Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS11610 bb2d9b22912e06256ff0a5c3fb857397 500 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 23 161 2.2E-27 T 29-03-2018 AM354_RS11610 bb2d9b22912e06256ff0a5c3fb857397 500 Gene3D G3DSA:3.30.565.10 9 201 2.5E-22 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS11610 bb2d9b22912e06256ff0a5c3fb857397 500 SUPERFAMILY SSF55874 24 172 1.7E-15 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS17130 7e9c45abff4a195ae6d7ec2c07b23d8d 101 Pfam PF05957 Bacterial protein of unknown function (DUF883) 9 101 5.9E-33 T 29-03-2018 IPR010279 Protein of unknown function DUF883, ElaB AM354_RS17130 7e9c45abff4a195ae6d7ec2c07b23d8d 101 Gene3D G3DSA:1.20.5.1230 4 88 3.2E-7 T 29-03-2018 AM354_RS13880 7570d081d49d4b8103b05b99b2c0b7e6 119 Gene3D G3DSA:3.30.230.10 1 119 1.8E-32 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AM354_RS13880 7570d081d49d4b8103b05b99b2c0b7e6 119 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 17 105 6.0E-44 T 29-03-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 AM354_RS13880 7570d081d49d4b8103b05b99b2c0b7e6 119 Pfam PF00825 Ribonuclease P 6 111 1.5E-32 T 29-03-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 AM354_RS13880 7570d081d49d4b8103b05b99b2c0b7e6 119 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 56 70 - T 29-03-2018 IPR020539 Ribonuclease P, conserved site GO:0004526 AM354_RS13880 7570d081d49d4b8103b05b99b2c0b7e6 119 SUPERFAMILY SSF54211 5 114 1.95E-31 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM354_RS13880 7570d081d49d4b8103b05b99b2c0b7e6 119 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 6 115 17.66 T 29-03-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 AM354_RS13880 7570d081d49d4b8103b05b99b2c0b7e6 119 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 5 114 7.3E-37 T 29-03-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 AM354_RS04225 c444d371410b09d59140739563a322a2 373 Gene3D G3DSA:2.60.120.650 2 208 7.9E-30 T 29-03-2018 AM354_RS04225 c444d371410b09d59140739563a322a2 373 SUPERFAMILY SSF51197 7 290 3.02E-75 T 29-03-2018 AM354_RS04225 c444d371410b09d59140739563a322a2 373 Pfam PF08007 Cupin superfamily protein 9 309 1.5E-101 T 29-03-2018 IPR003347 JmjC domain AM354_RS04225 c444d371410b09d59140739563a322a2 373 SMART SM00558 92 215 6.7E-10 T 29-03-2018 IPR003347 JmjC domain AM354_RS22750 8d3d641d17d06b3005f13ed1030415cd 404 TIGRFAM TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI 2 111 1.3E-27 T 29-03-2018 IPR017560 Cytochrome c-type biogenesis protein CcmI AM354_RS22750 8d3d641d17d06b3005f13ed1030415cd 404 Pfam PF14559 Tetratricopeptide repeat 174 241 2.8E-12 T 29-03-2018 AM354_RS22750 8d3d641d17d06b3005f13ed1030415cd 404 SUPERFAMILY SSF48452 160 268 1.96E-20 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS22750 8d3d641d17d06b3005f13ed1030415cd 404 Gene3D G3DSA:1.25.40.10 151 294 1.7E-17 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM354_RS01235 ef4525f3731ed600e93f26162b129800 119 TIGRFAM TIGR02978 phageshock_pspC: phage shock protein C 7 119 2.1E-40 T 29-03-2018 IPR014320 Phage shock protein, PspC AM354_RS01235 ef4525f3731ed600e93f26162b129800 119 Pfam PF04024 PspC domain 8 67 2.9E-17 T 29-03-2018 IPR007168 Phage shock protein, PspC, N-terminal AM354_RS03505 f2aebd18286ef793058dc3edae0e9a38 182 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 1 160 2.3E-35 T 29-03-2018 IPR007404 LexA-binding, inner membrane-associated putative hydrolase AM354_RS03505 f2aebd18286ef793058dc3edae0e9a38 182 PIRSF PIRSF030780 1 181 2.4E-95 T 29-03-2018 IPR016956 Inner membrane protein YdjM AM354_RS01940 d1cbba105b2171be27281b6b17378bf5 66 SUPERFAMILY SSF55008 2 62 3.14E-11 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AM354_RS01940 d1cbba105b2171be27281b6b17378bf5 66 Gene3D G3DSA:3.30.70.100 1 63 1.6E-9 T 29-03-2018 AM354_RS01940 d1cbba105b2171be27281b6b17378bf5 66 Pfam PF00403 Heavy-metal-associated domain 4 60 2.4E-6 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AM354_RS18380 e97a61974e6cd4a761119e0eb7ff387e 500 Gene3D G3DSA:1.20.1170.10 35 310 1.3E-7 T 29-03-2018 AM354_RS18380 e97a61974e6cd4a761119e0eb7ff387e 500 TIGRFAM TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family 4 486 3.8E-185 T 29-03-2018 IPR021207 Integrating conjugative element protein, PFL4705 AM354_RS01650 7c7508d74a5726a6dd9c5aa32a93bb76 322 Pfam PF00892 EamA-like transporter family 3 138 1.4E-16 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM354_RS01650 7c7508d74a5726a6dd9c5aa32a93bb76 322 SUPERFAMILY SSF103481 39 143 1.14E-10 T 29-03-2018 AM354_RS02665 bf3d1c184438b931ab85303d6a5a6afa 438 SUPERFAMILY SSF51556 74 377 1.59E-98 T 29-03-2018 IPR032466 Metal-dependent hydrolase AM354_RS02665 bf3d1c184438b931ab85303d6a5a6afa 438 Pfam PF01979 Amidohydrolase family 72 433 1.7E-69 T 29-03-2018 IPR006680 Amidohydrolase-related GO:0016787 AM354_RS02665 bf3d1c184438b931ab85303d6a5a6afa 438 SUPERFAMILY SSF51338 376 392 9.55E-9 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM354_RS02665 bf3d1c184438b931ab85303d6a5a6afa 438 SUPERFAMILY SSF51338 421 435 9.55E-9 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM354_RS02665 bf3d1c184438b931ab85303d6a5a6afa 438 SUPERFAMILY SSF51338 32 74 9.55E-9 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM354_RS02665 bf3d1c184438b931ab85303d6a5a6afa 438 Gene3D G3DSA:2.30.40.10 362 438 4.0E-6 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM354_RS02665 bf3d1c184438b931ab85303d6a5a6afa 438 Gene3D G3DSA:3.20.20.140 87 361 1.1E-67 T 29-03-2018 AM354_RS02665 bf3d1c184438b931ab85303d6a5a6afa 438 Gene3D G3DSA:2.30.40.10 20 86 1.8E-8 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM354_RS02665 bf3d1c184438b931ab85303d6a5a6afa 438 TIGRFAM TIGR02967 guan_deamin: guanine deaminase 31 430 1.7E-177 T 29-03-2018 IPR014311 Guanine deaminase GO:0006147|GO:0008270|GO:0008892 KEGG: 00230+3.5.4.3|MetaCyc: PWY-5497|MetaCyc: PWY-6606|MetaCyc: PWY-6608|MetaCyc: PWY-7442|Reactome: R-HSA-74259 AM354_RS18835 8ccc3d83009735d50b680f8b73a41718 144 Pfam PF01724 Domain of unknown function DUF29 6 142 2.6E-44 T 29-03-2018 IPR002636 Protein from unkown function DUF29 AM354_RS00800 d536d3fa7292986258bde0abc1e7230e 250 Pfam PF06790 Uncharacterised protein family (UPF0259) 1 247 1.2E-89 T 29-03-2018 IPR009627 Uncharacterised protein family UPF0259 AM354_RS00800 d536d3fa7292986258bde0abc1e7230e 250 Hamap MF_01067 UPF0259 membrane protein YciC [yciC]. 1 249 22.463 T 29-03-2018 IPR009627 Uncharacterised protein family UPF0259 AM354_RS24835 8bd97d2c401d3b520bfa29fdec3e3d7b 257 Pfam PF11750 Protein of unknown function (DUF3307) 8 118 2.7E-25 T 29-03-2018 IPR021737 Bacteriophage phiKZ, Orf197 AM354_RS25075 79ff414d3aa8635e3ded2ab85268c0a7 167 Pfam PF14113 Type VI secretion system (T6SS), amidase effector protein 4 46 150 6.9E-25 T 29-03-2018 IPR025562 Type VI secretion system (T6SS), amidase effector protein 4 AM354_RS13825 fa0986325ea3cc8e9f3a6125f0bd75e4 115 Pfam PF07119 Protein of unknown function (DUF1375) 13 75 1.5E-14 T 29-03-2018 IPR010780 Protein of unknown function DUF1375 AM354_RS02055 906dfa4188c4288883193abbac51bc3f 125 Gene3D G3DSA:3.10.180.10 1 125 5.2E-16 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS02055 906dfa4188c4288883193abbac51bc3f 125 SUPERFAMILY SSF54593 2 123 1.11E-19 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS02055 906dfa4188c4288883193abbac51bc3f 125 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 2 117 1.3E-4 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AM354_RS05560 77193aa3d2adb4f2a61cbd9a323c8909 466 Gene3D G3DSA:3.30.930.10 128 462 2.6E-95 T 29-03-2018 AM354_RS05560 77193aa3d2adb4f2a61cbd9a323c8909 466 SUPERFAMILY SSF50249 15 102 1.54E-17 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM354_RS05560 77193aa3d2adb4f2a61cbd9a323c8909 466 Pfam PF00152 tRNA synthetases class II (D, K and N) 119 460 2.2E-83 T 29-03-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS05560 77193aa3d2adb4f2a61cbd9a323c8909 466 Hamap MF_00534 Asparagine--tRNA ligase [asnS]. 6 466 46.577 T 29-03-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 AM354_RS05560 77193aa3d2adb4f2a61cbd9a323c8909 466 Gene3D G3DSA:2.40.50.140 7 106 6.6E-19 T 29-03-2018 AM354_RS05560 77193aa3d2adb4f2a61cbd9a323c8909 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 208 220 3.2E-14 T 29-03-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS05560 77193aa3d2adb4f2a61cbd9a323c8909 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 381 397 3.2E-14 T 29-03-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS05560 77193aa3d2adb4f2a61cbd9a323c8909 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 224 237 3.2E-14 T 29-03-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS05560 77193aa3d2adb4f2a61cbd9a323c8909 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 421 435 3.2E-14 T 29-03-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS05560 77193aa3d2adb4f2a61cbd9a323c8909 466 Pfam PF01336 OB-fold nucleic acid binding domain 20 99 1.8E-11 T 29-03-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 AM354_RS05560 77193aa3d2adb4f2a61cbd9a323c8909 466 SUPERFAMILY SSF55681 104 464 1.21E-96 T 29-03-2018 AM354_RS05560 77193aa3d2adb4f2a61cbd9a323c8909 466 TIGRFAM TIGR00457 asnS: asparagine--tRNA ligase 5 466 3.8E-210 T 29-03-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 AM354_RS13230 e6202672c76f5df0025d1b37544cbd00 238 SUPERFAMILY SSF56784 12 238 6.36E-42 T 29-03-2018 IPR023214 HAD-like domain AM354_RS13230 e6202672c76f5df0025d1b37544cbd00 238 Gene3D G3DSA:3.40.50.1000 6 221 9.6E-26 T 29-03-2018 IPR023214 HAD-like domain AM354_RS13230 e6202672c76f5df0025d1b37544cbd00 238 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 127 201 2.4E-12 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS13230 e6202672c76f5df0025d1b37544cbd00 238 Pfam PF00702 haloacid dehalogenase-like hydrolase 12 201 6.2E-17 T 29-03-2018 AM354_RS13230 e6202672c76f5df0025d1b37544cbd00 238 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 120 207 1.6E-9 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM354_RS13940 5d6a40bb2953f2a4cad797dfd1fd7c96 237 Gene3D G3DSA:1.10.3720.10 8 233 1.0E-42 T 29-03-2018 AM354_RS13940 5d6a40bb2953f2a4cad797dfd1fd7c96 237 SUPERFAMILY SSF161098 14 221 1.7E-41 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS13940 5d6a40bb2953f2a4cad797dfd1fd7c96 237 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 14 81 2.7E-17 T 29-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 AM354_RS13940 5d6a40bb2953f2a4cad797dfd1fd7c96 237 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 219 9.2E-15 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS14025 95e1ebad241a93d19f393baae8a70181 127 Pfam PF03899 ATP synthase I chain 13 109 1.2E-18 T 29-03-2018 IPR005598 ATP synthase protein I AM354_RS22135 7f4e98f25006338b0e93522dc200221f 92 Pfam PF09904 Winged helix-turn helix 4 90 8.8E-40 T 29-03-2018 IPR017162 Uncharacterised conserved protein UCP037266 AM354_RS22135 7f4e98f25006338b0e93522dc200221f 92 PIRSF PIRSF037266 1 92 3.4E-40 T 29-03-2018 IPR017162 Uncharacterised conserved protein UCP037266 AM354_RS00915 88c308237a1e3530e93e6ea56d596df2 253 SMART SM00014 76 227 1.2E-31 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM354_RS00915 88c308237a1e3530e93e6ea56d596df2 253 SUPERFAMILY SSF48317 145 234 8.63E-32 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM354_RS00915 88c308237a1e3530e93e6ea56d596df2 253 SUPERFAMILY SSF48317 17 113 8.63E-32 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM354_RS00915 88c308237a1e3530e93e6ea56d596df2 253 Pfam PF01569 PAP2 superfamily 80 232 8.2E-30 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM354_RS00915 88c308237a1e3530e93e6ea56d596df2 253 Gene3D G3DSA:1.20.144.10 32 250 3.8E-23 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM354_RS18105 1a81cce800d8a940e53d81b55da90759 204 Gene3D G3DSA:1.10.260.40 1 142 1.4E-9 T 29-03-2018 AM354_RS18105 1a81cce800d8a940e53d81b55da90759 204 SUPERFAMILY SSF47413 9 72 6.48E-9 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM354_RS18105 1a81cce800d8a940e53d81b55da90759 204 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 15 74 4.2E-7 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM354_RS18105 1a81cce800d8a940e53d81b55da90759 204 SMART SM00530 15 71 6.3E-4 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM354_RS00290 ce604211b9092d0a9a32d9cde3106086 254 Pfam PF06629 MltA-interacting protein MipA 34 254 1.0E-54 T 29-03-2018 IPR010583 MltA-interacting MipA AM354_RS00290 ce604211b9092d0a9a32d9cde3106086 254 Gene3D G3DSA:2.40.160.20 14 254 3.6E-12 T 29-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AM354_RS03325 a6fb02fe6c1bf4218fb8b559cc51787e 130 Hamap MF_00538 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF [arnF]. 2 126 22.815 T 29-03-2018 IPR022832 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF AM354_RS03325 a6fb02fe6c1bf4218fb8b559cc51787e 130 SUPERFAMILY SSF103481 41 124 4.71E-9 T 29-03-2018 AM354_RS17660 ab417cb235f37971ee47dc8e97c847b9 97 Pfam PF05717 IS66 Orf2 like protein 1 88 3.8E-33 T 29-03-2018 IPR008878 Transposase IS66, Orf2 AM354_RS02630 e7d43c6af3f84489899b4069069d57ff 383 SUPERFAMILY SSF54373 178 278 1.96E-7 T 29-03-2018 AM354_RS02630 e7d43c6af3f84489899b4069069d57ff 383 Pfam PF01494 FAD binding domain 8 348 8.7E-22 T 29-03-2018 IPR002938 FAD-binding domain GO:0071949 AM354_RS02630 e7d43c6af3f84489899b4069069d57ff 383 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 152 167 2.3E-20 T 29-03-2018 AM354_RS02630 e7d43c6af3f84489899b4069069d57ff 383 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 302 318 2.3E-20 T 29-03-2018 AM354_RS02630 e7d43c6af3f84489899b4069069d57ff 383 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 287 302 2.3E-20 T 29-03-2018 AM354_RS02630 e7d43c6af3f84489899b4069069d57ff 383 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 337 353 2.3E-20 T 29-03-2018 AM354_RS02630 e7d43c6af3f84489899b4069069d57ff 383 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 2.3E-20 T 29-03-2018 AM354_RS02630 e7d43c6af3f84489899b4069069d57ff 383 Gene3D G3DSA:3.50.50.60 5 357 2.5E-46 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS02630 e7d43c6af3f84489899b4069069d57ff 383 SUPERFAMILY SSF51905 274 376 1.14E-59 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS02630 e7d43c6af3f84489899b4069069d57ff 383 SUPERFAMILY SSF51905 6 173 1.14E-59 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS11595 d9957d5eafa8f2b8220918d6d2c0d135 598 Pfam PF10592 AIPR protein 245 561 2.0E-76 T 29-03-2018 IPR018891 Abortive bacteriophage infection, resistance AM354_RS05295 8fbdfe9f2315a87955a1b317f432f63d 486 Gene3D G3DSA:1.10.287.70 4 270 0.26 T 29-03-2018 AM354_RS05295 8fbdfe9f2315a87955a1b317f432f63d 486 PIRSF PIRSF006247 2 486 1.6E-163 T 29-03-2018 IPR004772 TrkH potassium transport family GO:0016021|GO:0022820|GO:0071805 AM354_RS05295 8fbdfe9f2315a87955a1b317f432f63d 486 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 87 469 1.4E-106 T 29-03-2018 IPR004772 TrkH potassium transport family GO:0016021|GO:0022820|GO:0071805 AM354_RS05295 8fbdfe9f2315a87955a1b317f432f63d 486 Pfam PF02386 Cation transport protein 42 480 1.1E-96 T 29-03-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 AM354_RS08865 6325b25107f7a47674a294f390e3f838 46 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 17 41 0.003 T 29-03-2018 AM354_RS08865 6325b25107f7a47674a294f390e3f838 46 ProSitePatterns PS00828 Ribosomal protein L36 signature. 14 40 - T 29-03-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS08865 6325b25107f7a47674a294f390e3f838 46 SUPERFAMILY SSF57840 8 41 8.89E-14 T 29-03-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS08865 6325b25107f7a47674a294f390e3f838 46 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 9 41 3.6E-9 T 29-03-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS08865 6325b25107f7a47674a294f390e3f838 46 Pfam PF00444 Ribosomal protein L36 1 41 3.7E-17 T 29-03-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS08865 6325b25107f7a47674a294f390e3f838 46 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 41 17.111 T 29-03-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM354_RS01355 280a649de3db79759928f11dd0f2cbbc 65 Pfam PF13617 YnbE-like lipoprotein 9 63 1.5E-28 T 29-03-2018 IPR025985 YnbE-like lipoprotein AM354_RS01355 280a649de3db79759928f11dd0f2cbbc 65 ProDom PD052969 LIPOPROTEIN PRECURSOR SIGNAL YNBE MEMBRANE OUTER POSSIBLE SIMILAR ECS2004 SO2063 20 65 3.0E-16 T 29-03-2018 AM354_RS19900 41329650e26538d72b73ad6361050359 215 Pfam PF01323 DSBA-like thioredoxin domain 9 186 5.2E-7 T 29-03-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590 AM354_RS19900 41329650e26538d72b73ad6361050359 215 SUPERFAMILY SSF52833 4 210 7.46E-31 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS19900 41329650e26538d72b73ad6361050359 215 Gene3D G3DSA:3.40.30.10 2 209 1.3E-26 T 29-03-2018 AM354_RS23770 c88976bbe5d62c7eb8fe204176abacb8 105 ProDom PD030876 UPF0265 YEEX HELIX ALPHA BFL460 UNCHARACTERIZED FN0411 HI1168 VPA1226 BCR 12 99 2.0E-41 T 29-03-2018 IPR007458 Protein of unknown function DUF496 AM354_RS23770 c88976bbe5d62c7eb8fe204176abacb8 105 Pfam PF04363 Protein of unknown function (DUF496) 9 100 5.7E-47 T 29-03-2018 IPR007458 Protein of unknown function DUF496 AM354_RS23770 c88976bbe5d62c7eb8fe204176abacb8 105 Hamap MF_00683 UPF0265 protein YeeX [yeeX]. 9 103 25.908 T 29-03-2018 IPR007458 Protein of unknown function DUF496 AM354_RS23770 c88976bbe5d62c7eb8fe204176abacb8 105 PIRSF PIRSF028773 1 105 3.3E-51 T 29-03-2018 IPR007458 Protein of unknown function DUF496 AM354_RS14885 1ae5566937d44fe6e0dcc66bda3cb011 164 Gene3D G3DSA:3.90.420.10 14 164 2.3E-27 T 29-03-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 AM354_RS14885 1ae5566937d44fe6e0dcc66bda3cb011 164 SUPERFAMILY SSF56524 37 162 1.7E-20 T 29-03-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 AM354_RS14885 1ae5566937d44fe6e0dcc66bda3cb011 164 Pfam PF00174 Oxidoreductase molybdopterin binding domain 64 139 1.2E-8 T 29-03-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 AM354_RS25875 115a04cd27d86f3776bae8923487398f 70 Pfam PF13993 YccJ-like protein 4 70 4.7E-38 T 29-03-2018 IPR025600 YccJ-like protein AM354_RS04605 5106ebd1522adb9dfcf410d61a6cfabe 293 Pfam PF05425 Copper resistance protein D 188 286 9.3E-19 T 29-03-2018 IPR008457 Copper resistance protein D GO:0016021 AM354_RS14085 7843f5796430b029632ea8b6223a4e55 295 SUPERFAMILY SSF53822 26 295 1.01E-86 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS14085 7843f5796430b029632ea8b6223a4e55 295 Gene3D G3DSA:3.40.50.2300 27 131 6.7E-27 T 29-03-2018 AM354_RS14085 7843f5796430b029632ea8b6223a4e55 295 Pfam PF13407 Periplasmic binding protein domain 29 281 2.4E-59 T 29-03-2018 IPR025997 Periplasmic binding protein AM354_RS14085 7843f5796430b029632ea8b6223a4e55 295 Gene3D G3DSA:3.40.50.2300 132 295 1.8E-46 T 29-03-2018 AM354_RS07560 18825c296f8520d7ef361d505dcbb29b 225 Pfam PF01965 DJ-1/PfpI family 7 165 4.8E-26 T 29-03-2018 IPR002818 DJ-1/PfpI AM354_RS07560 18825c296f8520d7ef361d505dcbb29b 225 SUPERFAMILY SSF52317 7 188 2.12E-43 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS07560 18825c296f8520d7ef361d505dcbb29b 225 Gene3D G3DSA:3.40.50.880 1 225 1.5E-53 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like AM354_RS05135 3c106c2afa4d86dc8ef8a954db885125 74 Pfam PF10769 Protein of unknown function (DUF2594) 1 74 7.6E-40 T 29-03-2018 AM354_RS26195 64cb8dab9acd48020eb10c317810ea9b 230 Pfam PF11740 Plasmid replication region DNA-binding N-term 4 116 5.3E-27 T 29-03-2018 IPR021104 KfrA, N-terminal DNA-binding domain AM354_RS26195 64cb8dab9acd48020eb10c317810ea9b 230 Gene3D G3DSA:1.20.5.400 81 143 3.7E-4 T 29-03-2018 AM354_RS26195 64cb8dab9acd48020eb10c317810ea9b 230 Gene3D G3DSA:1.20.5.170 144 223 1.3E-5 T 29-03-2018 AM354_RS00765 0f9c3a7e71f71fc8abc77cbc42cd6a34 131 Gene3D G3DSA:2.10.109.10 5 122 2.2E-9 T 29-03-2018 AM354_RS00765 0f9c3a7e71f71fc8abc77cbc42cd6a34 131 SUPERFAMILY SSF51306 6 117 8.2E-14 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AM354_RS13395 03e0112a6c0e812338808567d1ab2d26 93 Gene3D G3DSA:3.10.50.40 2 90 1.6E-29 T 29-03-2018 AM354_RS13395 03e0112a6c0e812338808567d1ab2d26 93 SUPERFAMILY SSF54534 5 90 8.5E-28 T 29-03-2018 AM354_RS13395 03e0112a6c0e812338808567d1ab2d26 93 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 31 51 - T 29-03-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 AM354_RS13395 03e0112a6c0e812338808567d1ab2d26 93 Pfam PF13616 PPIC-type PPIASE domain 15 90 4.0E-23 T 29-03-2018 AM354_RS10490 58c01dddefadfa5fd8213b4a8c777217 399 PRINTS PR00812 Bacterial general secretion pathway protein F signature 159 187 4.5E-16 T 29-03-2018 IPR003004 GspF/PilC family AM354_RS10490 58c01dddefadfa5fd8213b4a8c777217 399 PRINTS PR00812 Bacterial general secretion pathway protein F signature 60 72 4.5E-16 T 29-03-2018 IPR003004 GspF/PilC family AM354_RS10490 58c01dddefadfa5fd8213b4a8c777217 399 PRINTS PR00812 Bacterial general secretion pathway protein F signature 379 398 4.5E-16 T 29-03-2018 IPR003004 GspF/PilC family AM354_RS10490 58c01dddefadfa5fd8213b4a8c777217 399 PRINTS PR00812 Bacterial general secretion pathway protein F signature 363 377 4.5E-16 T 29-03-2018 IPR003004 GspF/PilC family AM354_RS10490 58c01dddefadfa5fd8213b4a8c777217 399 Pfam PF00482 Type II secretion system (T2SS), protein F 270 390 2.5E-26 T 29-03-2018 IPR018076 Type II secretion system F domain AM354_RS10490 58c01dddefadfa5fd8213b4a8c777217 399 Pfam PF00482 Type II secretion system (T2SS), protein F 64 187 2.9E-30 T 29-03-2018 IPR018076 Type II secretion system F domain AM354_RS10490 58c01dddefadfa5fd8213b4a8c777217 399 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 159 187 - T 29-03-2018 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 AM354_RS19805 06f16757fcc761204b9e4a9d76cf848e 173 Gene3D G3DSA:2.60.40.1090 25 173 6.5E-34 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS19805 06f16757fcc761204b9e4a9d76cf848e 173 Pfam PF00419 Fimbrial protein 28 173 2.4E-14 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS19805 06f16757fcc761204b9e4a9d76cf848e 173 SUPERFAMILY SSF49401 27 173 4.47E-32 T 29-03-2018 IPR008966 Adhesion domain AM354_RS17665 6ef814be145c18abb6ff029ffe71f269 255 SUPERFAMILY SSF52540 3 227 6.29E-65 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS17665 6ef814be145c18abb6ff029ffe71f269 255 SMART SM00382 27 214 7.8E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS17665 6ef814be145c18abb6ff029ffe71f269 255 Gene3D G3DSA:3.40.50.300 1 242 4.6E-64 T 29-03-2018 AM354_RS17665 6ef814be145c18abb6ff029ffe71f269 255 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS17665 6ef814be145c18abb6ff029ffe71f269 255 Pfam PF00005 ABC transporter 18 166 2.5E-33 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS04780 7f7d28150499ba7c283e3ae04e8a2087 121 Pfam PF13788 Domain of unknown function (DUF4180) 10 119 7.9E-36 T 29-03-2018 IPR025438 Domain of unknown function DUF4180 AM354_RS15020 0fdbd12b7a3cabc93f129c7c9ba88f4d 194 Pfam PF10076 Uncharacterised protein conserved in bacteria (DUF2313) 11 192 1.3E-42 T 29-03-2018 IPR018755 Bacteriophage Mu-like, Gp48 AM354_RS25915 abe75849f0d28f16900cf553fc7d614c 453 Pfam PF00324 Amino acid permease 18 450 5.3E-118 T 29-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 AM354_RS25915 abe75849f0d28f16900cf553fc7d614c 453 PIRSF PIRSF006060 1 450 1.3E-75 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM354_RS25915 abe75849f0d28f16900cf553fc7d614c 453 ProSitePatterns PS00218 Amino acid permeases signature. 43 73 - T 29-03-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 AM354_RS19335 b646fe496537d5692f7b4b265b51558d 232 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 63 77 - T 29-03-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS19335 b646fe496537d5692f7b4b265b51558d 232 Pfam PF00849 RNA pseudouridylate synthase 25 179 2.0E-26 T 29-03-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS19335 b646fe496537d5692f7b4b265b51558d 232 Gene3D G3DSA:3.30.2350.10 16 231 2.1E-54 T 29-03-2018 AM354_RS19335 b646fe496537d5692f7b4b265b51558d 232 SUPERFAMILY SSF55120 11 226 2.24E-55 T 29-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM354_RS15080 4ed17ebbe9dcb9bd301b58517d73960e 180 Pfam PF05069 Phage virion morphogenesis family 15 171 1.3E-18 T 29-03-2018 IPR006522 Phage virion morphogensis protein AM354_RS15080 4ed17ebbe9dcb9bd301b58517d73960e 180 TIGRFAM TIGR01635 tail_comp_S: phage virion morphogenesis protein 14 116 6.7E-11 T 29-03-2018 IPR006522 Phage virion morphogensis protein AM354_RS07520 1d3443813e1d72c383d71b420116c1aa 179 Gene3D G3DSA:3.40.630.30 8 178 3.0E-32 T 29-03-2018 AM354_RS07520 1d3443813e1d72c383d71b420116c1aa 179 SUPERFAMILY SSF55729 12 172 1.17E-27 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS07520 1d3443813e1d72c383d71b420116c1aa 179 Pfam PF13420 Acetyltransferase (GNAT) domain 12 166 2.8E-19 T 29-03-2018 AM354_RS04160 2b7424e82c69f963e5d4b075c26b328b 112 Pfam PF07007 Lysozyme inhibitor LprI 26 101 8.1E-5 T 29-03-2018 IPR009739 Lysozyme inhibitor LprI, N-terminal AM354_RS04160 2b7424e82c69f963e5d4b075c26b328b 112 PIRSF PIRSF037256 1 112 4.0E-46 T 29-03-2018 IPR017160 Uncharacterised conserved protein UCP037256 AM354_RS23980 228fbaa9d2d9fcbc1947715283f20227 304 Gene3D G3DSA:1.10.3470.10 2 293 1.1E-52 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS23980 228fbaa9d2d9fcbc1947715283f20227 304 Pfam PF02653 Branched-chain amino acid transport system / permease component 9 288 2.6E-52 T 29-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AM354_RS24235 0e47a97aecb1352c9014e98d8c93d86d 292 TIGRFAM TIGR00688 rarD: protein RarD 3 254 1.2E-56 T 29-03-2018 IPR004626 RarD protein GO:0005215|GO:0005887|GO:0006810 AM354_RS24235 0e47a97aecb1352c9014e98d8c93d86d 292 Pfam PF00892 EamA-like transporter family 3 139 4.2E-7 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM354_RS24235 0e47a97aecb1352c9014e98d8c93d86d 292 SUPERFAMILY SSF103481 36 139 2.48E-8 T 29-03-2018 AM354_RS05140 209259811c5ec857d68ec251549991f7 113 ProDom PD028709 MEMBRANE INNER YDGC GLPM ALGINATE BIOSYNTHESIS TRANSMEMBRANE REQUIRED FOR UNCHARACTERIZED 23 111 2.0E-31 T 29-03-2018 IPR009707 Membrane protein GlpM/YdgC AM354_RS05140 209259811c5ec857d68ec251549991f7 113 Pfam PF06942 GlpM protein 5 110 9.8E-47 T 29-03-2018 IPR009707 Membrane protein GlpM/YdgC AM354_RS14860 6c17c52801bdaad4af0e39675f62e125 212 Pfam PF00440 Bacterial regulatory proteins, tetR family 25 69 1.4E-5 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM354_RS14860 6c17c52801bdaad4af0e39675f62e125 212 Gene3D G3DSA:1.10.357.10 15 210 2.2E-19 T 29-03-2018 AM354_RS14860 6c17c52801bdaad4af0e39675f62e125 212 SUPERFAMILY SSF46689 18 80 1.2E-8 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM354_RS13410 3460187bedd2773e919c4a5d9cac9fd1 674 SMART SM00052 419 664 6.0E-94 T 29-03-2018 IPR001633 EAL domain AM354_RS13410 3460187bedd2773e919c4a5d9cac9fd1 674 Pfam PF17154 Gammaproteobacterial periplasmic sensor domain 42 161 2.5E-58 T 29-03-2018 IPR033419 Gammaproteobacterial periplasmic sensor domain GAPES3 AM354_RS13410 3460187bedd2773e919c4a5d9cac9fd1 674 Gene3D G3DSA:3.20.20.450 416 668 4.6E-85 T 29-03-2018 IPR001633 EAL domain AM354_RS13410 3460187bedd2773e919c4a5d9cac9fd1 674 Gene3D G3DSA:3.30.70.270 243 415 8.6E-33 T 29-03-2018 AM354_RS13410 3460187bedd2773e919c4a5d9cac9fd1 674 Pfam PF00990 Diguanylate cyclase, GGDEF domain 253 405 7.2E-20 T 29-03-2018 IPR000160 GGDEF domain AM354_RS13410 3460187bedd2773e919c4a5d9cac9fd1 674 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 247 407 5.4E-11 T 29-03-2018 IPR000160 GGDEF domain AM354_RS13410 3460187bedd2773e919c4a5d9cac9fd1 674 Pfam PF00563 EAL domain 426 659 9.5E-62 T 29-03-2018 IPR001633 EAL domain AM354_RS13410 3460187bedd2773e919c4a5d9cac9fd1 674 SMART SM00267 238 409 1.2E-17 T 29-03-2018 IPR000160 GGDEF domain AM354_RS13410 3460187bedd2773e919c4a5d9cac9fd1 674 SUPERFAMILY SSF141868 424 668 7.72E-76 T 29-03-2018 IPR001633 EAL domain AM354_RS13410 3460187bedd2773e919c4a5d9cac9fd1 674 SUPERFAMILY SSF55073 255 411 6.91E-24 T 29-03-2018 IPR029787 Nucleotide cyclase AM354_RS05695 949299f5556eea9344adf1735b4422a9 587 TIGRFAM TIGR00702 TIGR00702: YcaO-type kinase domain 11 404 1.4E-161 T 29-03-2018 IPR003776 YcaO-like domain AM354_RS05695 949299f5556eea9344adf1735b4422a9 587 Pfam PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding 59 391 1.3E-80 T 29-03-2018 IPR003776 YcaO-like domain AM354_RS03530 185e6c561c557c8cdd00d264e5459c78 336 TIGRFAM TIGR03227 PhnS: 2-aminoethylphosphonate ABC transporter, 2-aminoethylphosphonate binding protein 15 333 3.4E-141 T 29-03-2018 IPR017637 Putative 2-aminoethylphosphonate binding protein, ABC transporter AM354_RS03530 185e6c561c557c8cdd00d264e5459c78 336 SUPERFAMILY SSF53850 21 332 3.12E-53 T 29-03-2018 AM354_RS03530 185e6c561c557c8cdd00d264e5459c78 336 Gene3D G3DSA:3.40.190.10 24 174 2.2E-21 T 29-03-2018 AM354_RS03530 185e6c561c557c8cdd00d264e5459c78 336 Gene3D G3DSA:3.40.190.10 179 331 5.8E-11 T 29-03-2018 AM354_RS03530 185e6c561c557c8cdd00d264e5459c78 336 Pfam PF01547 Bacterial extracellular solute-binding protein 41 277 4.3E-23 T 29-03-2018 IPR006059 Solute-binding family 1 GO:0006810 AM354_RS15450 f84609447aa391e7fb40240b86641ba4 438 Pfam PF02447 GntP family permease 1 436 2.2E-181 T 29-03-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AM354_RS15450 f84609447aa391e7fb40240b86641ba4 438 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 1 438 1.4E-196 T 29-03-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AM354_RS15450 f84609447aa391e7fb40240b86641ba4 438 PIRSF PIRSF002746 1 438 1.8E-159 T 29-03-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AM354_RS11490 afab18a28a36b1f9d856fe0ed13cee77 136 Gene3D G3DSA:3.40.630.30 18 133 1.2E-9 T 29-03-2018 AM354_RS11490 afab18a28a36b1f9d856fe0ed13cee77 136 SUPERFAMILY SSF55729 40 113 2.66E-10 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS11490 afab18a28a36b1f9d856fe0ed13cee77 136 Pfam PF00583 Acetyltransferase (GNAT) family 52 103 3.6E-5 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS05245 326035d1a105e666e8d1c285e04743d0 186 Gene3D G3DSA:3.30.530.20 11 185 0.003 T 29-03-2018 IPR023393 START-like domain AM354_RS24375 1c64c52bf41df1646fa4a9ba3b8330bb 340 SUPERFAMILY SSF51679 7 333 4.06E-55 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AM354_RS24375 1c64c52bf41df1646fa4a9ba3b8330bb 340 Pfam PF00296 Luciferase-like monooxygenase 8 250 8.6E-25 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AM354_RS24375 1c64c52bf41df1646fa4a9ba3b8330bb 340 Gene3D G3DSA:3.20.20.30 1 338 3.1E-56 T 29-03-2018 AM354_RS19150 17ff740d135bfef2dc3da223a93996f1 413 Gene3D G3DSA:1.20.1250.20 210 406 2.3E-19 T 29-03-2018 AM354_RS19150 17ff740d135bfef2dc3da223a93996f1 413 SUPERFAMILY SSF103473 3 400 1.24E-57 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS19150 17ff740d135bfef2dc3da223a93996f1 413 Pfam PF07690 Major Facilitator Superfamily 13 366 1.0E-43 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS19150 17ff740d135bfef2dc3da223a93996f1 413 Gene3D G3DSA:1.20.1250.20 1 200 1.4E-23 T 29-03-2018 AM354_RS14380 9494abea6b8143ffe658373beec3c360 364 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 103 321 4.3E-22 T 29-03-2018 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 AM354_RS14380 9494abea6b8143ffe658373beec3c360 364 SUPERFAMILY SSF53756 38 358 3.08E-62 T 29-03-2018 AM354_RS14380 9494abea6b8143ffe658373beec3c360 364 Gene3D G3DSA:3.40.50.2000 190 359 1.9E-25 T 29-03-2018 AM354_RS14380 9494abea6b8143ffe658373beec3c360 364 Gene3D G3DSA:3.40.50.2000 38 186 4.3E-28 T 29-03-2018 AM354_RS22575 d0da0e5e956125132abc0eaf47de230b 110 Pfam PF10697 Protein of unknown function (DUF2502) 24 70 1.3E-13 T 29-03-2018 IPR019638 Protein of unknown function DUF2502 AM354_RS01245 3d2366f605688faf4a0b3c14397c8eee 465 PIRSF PIRSF019381 1 465 9.8E-218 T 29-03-2018 IPR007413 Protein of unknown function DUF463, YcjX-like protein AM354_RS01245 3d2366f605688faf4a0b3c14397c8eee 465 Gene3D G3DSA:3.40.50.300 1 366 1.9E-16 T 29-03-2018 AM354_RS01245 3d2366f605688faf4a0b3c14397c8eee 465 Pfam PF04317 YcjX-like family, DUF463 20 464 7.4E-187 T 29-03-2018 IPR007413 Protein of unknown function DUF463, YcjX-like protein AM354_RS11680 61fde5d97b21765e9e6a939d49cd6650 364 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 2 348 4.2E-116 T 29-03-2018 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 AM354_RS11680 61fde5d97b21765e9e6a939d49cd6650 364 Pfam PF03739 Predicted permease YjgP/YjgQ family 5 345 3.2E-74 T 29-03-2018 IPR005495 Permease LptG/LptF-related GO:0016021 AM354_RS02090 5f66de1c13726ba3db75d6846da39470 313 SUPERFAMILY SSF51658 5 298 1.52E-43 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM354_RS02090 5f66de1c13726ba3db75d6846da39470 313 Pfam PF01261 Xylose isomerase-like TIM barrel 19 263 4.9E-32 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM354_RS02090 5f66de1c13726ba3db75d6846da39470 313 Pfam PF07582 AP endonuclease family 2 C terminus 269 311 2.4E-9 T 29-03-2018 IPR011418 AP endonuclease, family 2, C-terminal AM354_RS02090 5f66de1c13726ba3db75d6846da39470 313 Gene3D G3DSA:3.20.20.150 1 313 2.3E-51 T 29-03-2018 AM354_RS13860 ee10b50a356379879c912a33d9b4abd3 361 ProSitePatterns PS00618 RecF protein signature 2. 298 316 - T 29-03-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 AM354_RS13860 ee10b50a356379879c912a33d9b4abd3 361 Gene3D G3DSA:3.40.50.300 1 359 1.6E-31 T 29-03-2018 AM354_RS13860 ee10b50a356379879c912a33d9b4abd3 361 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 351 3.3E-39 T 29-03-2018 IPR003395 RecF/RecN/SMC, N-terminal AM354_RS13860 ee10b50a356379879c912a33d9b4abd3 361 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 1 355 1.4E-134 T 29-03-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 AM354_RS13860 ee10b50a356379879c912a33d9b4abd3 361 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 361 100.562 T 29-03-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 AM354_RS13860 ee10b50a356379879c912a33d9b4abd3 361 SUPERFAMILY SSF52540 1 341 3.96E-39 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS13860 ee10b50a356379879c912a33d9b4abd3 361 ProSitePatterns PS00617 RecF protein signature 1. 117 137 - T 29-03-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 AM354_RS02430 754ae0cd415d93a33178f99cf4f52a77 93 PIRSF PIRSF030798 1 93 3.3E-23 T 29-03-2018 IPR016958 Uncharacterised conserved protein UCP030798 AM354_RS02430 754ae0cd415d93a33178f99cf4f52a77 93 Pfam PF15940 Family of unknown function 1 92 1.6E-41 T 29-03-2018 IPR016958 Uncharacterised conserved protein UCP030798 AM354_RS02430 754ae0cd415d93a33178f99cf4f52a77 93 ProDom PD064934 YJCB MEMBRANE INNER ECS5042 21 92 1.0E-8 T 29-03-2018 IPR016958 Uncharacterised conserved protein UCP030798 AM354_RS11820 86be0657e7549c8b8004844831124397 147 Pfam PF06754 Phosphonate metabolism protein PhnG 6 146 1.7E-57 T 29-03-2018 IPR009609 Phosphonate metabolism PhnG GO:0015716|GO:0019634 KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AM354_RS11820 86be0657e7549c8b8004844831124397 147 TIGRFAM TIGR03293 PhnG_redo: phosphonate C-P lyase system protein PhnG 6 147 3.9E-56 T 29-03-2018 IPR009609 Phosphonate metabolism PhnG GO:0015716|GO:0019634 KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AM354_RS00565 cd31d94be30a84e12e0d193bdcc029e1 67 Gene3D G3DSA:1.10.10.10 9 67 6.8E-7 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS04980 4f7311cbeef3853bd1659b34507c571d 105 SMART SM00418 15 93 8.3E-24 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS04980 4f7311cbeef3853bd1659b34507c571d 105 Gene3D G3DSA:1.10.10.10 2 102 2.6E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS04980 4f7311cbeef3853bd1659b34507c571d 105 Pfam PF01022 Bacterial regulatory protein, arsR family 23 67 5.0E-14 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS04980 4f7311cbeef3853bd1659b34507c571d 105 SUPERFAMILY SSF46785 11 96 5.92E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS04980 4f7311cbeef3853bd1659b34507c571d 105 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 64 79 5.9E-13 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS04980 4f7311cbeef3853bd1659b34507c571d 105 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 49 64 5.9E-13 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS04980 4f7311cbeef3853bd1659b34507c571d 105 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 17 32 5.9E-13 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS04980 4f7311cbeef3853bd1659b34507c571d 105 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 36 47 5.9E-13 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM354_RS24980 0b65dbb582c7ab536ee9c630e7bed475 190 Pfam PF04224 Protein of unknown function, DUF417 4 179 1.1E-71 T 29-03-2018 IPR007339 Protein of unknown function DUF417 AM354_RS24980 0b65dbb582c7ab536ee9c630e7bed475 190 PIRSF PIRSF028065 78 181 6.8E-10 T 29-03-2018 IPR016865 Inner membrane protein RclC AM354_RS24980 0b65dbb582c7ab536ee9c630e7bed475 190 PIRSF PIRSF028065 7 65 2.4E-12 T 29-03-2018 IPR016865 Inner membrane protein RclC AM354_RS17720 11fb971184f756d72b38dabca433b8b6 307 Pfam PF13737 Transposase DDE domain 19 130 2.7E-44 T 29-03-2018 IPR025668 Transposase DDE domain AM354_RS20770 5659f8edfdcf7eff18b5a71b97eb936a 683 Pfam PF05840 Bacteriophage replication gene A protein (GPA) 133 456 1.6E-108 T 29-03-2018 IPR008766 Replication gene A protein GO:0006260 AM354_RS08965 dbfd90be24280809156dbbfa58713e86 629 Pfam PF00263 Bacterial type II and III secretion system protein 401 566 5.0E-48 T 29-03-2018 IPR004846 Type II/III secretion system GO:0009306 AM354_RS08965 dbfd90be24280809156dbbfa58713e86 629 PRINTS PR00811 Bacterial general secretion pathway protein D signature 397 421 1.4E-39 T 29-03-2018 IPR001775 GspD/PilQ family AM354_RS08965 dbfd90be24280809156dbbfa58713e86 629 PRINTS PR00811 Bacterial general secretion pathway protein D signature 329 339 1.4E-39 T 29-03-2018 IPR001775 GspD/PilQ family AM354_RS08965 dbfd90be24280809156dbbfa58713e86 629 PRINTS PR00811 Bacterial general secretion pathway protein D signature 432 442 1.4E-39 T 29-03-2018 IPR001775 GspD/PilQ family AM354_RS08965 dbfd90be24280809156dbbfa58713e86 629 PRINTS PR00811 Bacterial general secretion pathway protein D signature 553 567 1.4E-39 T 29-03-2018 IPR001775 GspD/PilQ family AM354_RS08965 dbfd90be24280809156dbbfa58713e86 629 PRINTS PR00811 Bacterial general secretion pathway protein D signature 530 548 1.4E-39 T 29-03-2018 IPR001775 GspD/PilQ family AM354_RS08965 dbfd90be24280809156dbbfa58713e86 629 TIGRFAM TIGR02517 type_II_gspD: type II secretion system protein D 15 571 3.2E-159 T 29-03-2018 IPR013356 Type II secretion system GspD GO:0008565|GO:0015627|GO:0015628|GO:0019867 AM354_RS08965 dbfd90be24280809156dbbfa58713e86 629 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 511 544 - T 29-03-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 AM354_RS08965 dbfd90be24280809156dbbfa58713e86 629 Pfam PF03958 Bacterial type II/III secretion system short domain 177 244 8.1E-13 T 29-03-2018 IPR005644 NolW-like AM354_RS08965 dbfd90be24280809156dbbfa58713e86 629 Pfam PF03958 Bacterial type II/III secretion system short domain 252 329 7.5E-18 T 29-03-2018 IPR005644 NolW-like AM354_RS08965 dbfd90be24280809156dbbfa58713e86 629 Pfam PF03958 Bacterial type II/III secretion system short domain 112 172 5.2E-10 T 29-03-2018 IPR005644 NolW-like AM354_RS14235 ec3df242c14d763e7e7defb9659863d4 466 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 376 396 - T 29-03-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 AM354_RS14235 ec3df242c14d763e7e7defb9659863d4 466 TIGRFAM TIGR03173 pbuX: xanthine permease 42 460 4.6E-125 T 29-03-2018 IPR017588 Uric acid permease UacT-like GO:0006810|GO:0016021 AM354_RS14235 ec3df242c14d763e7e7defb9659863d4 466 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 30 458 1.0E-138 T 29-03-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 AM354_RS14235 ec3df242c14d763e7e7defb9659863d4 466 Pfam PF00860 Permease family 35 427 1.0E-107 T 29-03-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 AM354_RS26215 64974c1cbadf579468a74ebc51112b49 73 Pfam PF06412 Conjugal transfer protein TraD 2 63 7.0E-17 T 29-03-2018 IPR009444 Conjugal transfer, TraD, alpha-type GO:0000746 AM354_RS18540 750462010ec37f29d44241ae8f053eed 116 Gene3D G3DSA:1.10.287.910 16 68 1.2E-19 T 29-03-2018 AM354_RS18540 750462010ec37f29d44241ae8f053eed 116 Pfam PF02411 MerT mercuric transport protein 1 116 1.4E-62 T 29-03-2018 IPR003457 Mercuric transport protein MerT GO:0015097|GO:0015694|GO:0016020 AM354_RS13450 861c1819fef7573bc2176aa1ef52e960 67 TIGRFAM TIGR03493 cellullose_BcsF: celllulose biosynthesis operon protein BcsF/YhjT 3 60 2.3E-24 T 29-03-2018 IPR019995 Cellulose biosynthesis, BcsF/YhjT AM354_RS13450 861c1819fef7573bc2176aa1ef52e960 67 Pfam PF11120 Cellulose biosynthesis protein BcsF 3 60 3.2E-30 T 29-03-2018 IPR019995 Cellulose biosynthesis, BcsF/YhjT AM354_RS13450 861c1819fef7573bc2176aa1ef52e960 67 ProDom PD053231 YHJT MEMBRANE INNER BCSF 2 63 1.0E-6 T 29-03-2018 IPR019995 Cellulose biosynthesis, BcsF/YhjT AM354_RS13440 152751342f9139529179f454398fb6ed 63 ProDom PD053230 YHJR ECS4415 STY4179 CYTOPLASMIC 17 58 8.0E-9 T 29-03-2018 IPR024487 Cellulose biosynthesis protein BcsR AM354_RS13440 152751342f9139529179f454398fb6ed 63 Pfam PF10945 Cellulose biosynthesis protein BcsR 16 57 7.2E-23 T 29-03-2018 IPR024487 Cellulose biosynthesis protein BcsR AM354_RS24480 4d2c0f165ec264f46c82d654401d715f 144 Pfam PF07681 DoxX 20 98 5.1E-17 T 29-03-2018 IPR032808 DoxX family AM354_RS23430 ce136d60fc675d83c515af2edf0ae70a 249 Pfam PF05100 Phage minor tail protein L 23 246 4.0E-76 T 29-03-2018 IPR006487 Bacteriophage lambda, GpL, minor tail AM354_RS23430 ce136d60fc675d83c515af2edf0ae70a 249 TIGRFAM TIGR01600 phage_tail_L: phage minor tail protein L 5 246 1.3E-56 T 29-03-2018 IPR006487 Bacteriophage lambda, GpL, minor tail AM354_RS16780 e3d061d4803209d6a3b51907477c2cae 155 Gene3D G3DSA:3.10.450.30 48 155 4.1E-36 T 29-03-2018 AM354_RS16780 e3d061d4803209d6a3b51907477c2cae 155 Pfam PF00545 ribonuclease 65 152 2.1E-24 T 29-03-2018 IPR000026 Guanine-specific ribonuclease N1/T1/U2 GO:0003723|GO:0004521 AM354_RS16780 e3d061d4803209d6a3b51907477c2cae 155 PRINTS PR00117 Barnase signature 92 110 8.3E-30 T 29-03-2018 IPR001887 Barnase GO:0003723|GO:0004521 AM354_RS16780 e3d061d4803209d6a3b51907477c2cae 155 PRINTS PR00117 Barnase signature 72 89 8.3E-30 T 29-03-2018 IPR001887 Barnase GO:0003723|GO:0004521 AM354_RS16780 e3d061d4803209d6a3b51907477c2cae 155 PRINTS PR00117 Barnase signature 113 132 8.3E-30 T 29-03-2018 IPR001887 Barnase GO:0003723|GO:0004521 AM354_RS16780 e3d061d4803209d6a3b51907477c2cae 155 PRINTS PR00117 Barnase signature 135 153 8.3E-30 T 29-03-2018 IPR001887 Barnase GO:0003723|GO:0004521 AM354_RS16780 e3d061d4803209d6a3b51907477c2cae 155 PRINTS PR00117 Barnase signature 52 69 8.3E-30 T 29-03-2018 IPR001887 Barnase GO:0003723|GO:0004521 AM354_RS16780 e3d061d4803209d6a3b51907477c2cae 155 PIRSF PIRSF001013 1 155 1.0E-60 T 29-03-2018 IPR001887 Barnase GO:0003723|GO:0004521 AM354_RS16780 e3d061d4803209d6a3b51907477c2cae 155 SUPERFAMILY SSF53933 49 154 1.3E-36 T 29-03-2018 IPR016191 Ribonuclease/ribotoxin GO:0003723|GO:0004540 AM354_RS19425 84a5cdc22c43c2e543ddb56b6d179e0f 202 PIRSF PIRSF006806 6 193 4.3E-37 T 29-03-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase AM354_RS19425 84a5cdc22c43c2e543ddb56b6d179e0f 202 Gene3D G3DSA:3.40.50.10420 3 200 1.1E-59 T 29-03-2018 AM354_RS19425 84a5cdc22c43c2e543ddb56b6d179e0f 202 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 11 192 8.7E-54 T 29-03-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase AM354_RS19425 84a5cdc22c43c2e543ddb56b6d179e0f 202 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 11 192 5.9E-47 T 29-03-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase AM354_RS19425 84a5cdc22c43c2e543ddb56b6d179e0f 202 SUPERFAMILY SSF100950 10 196 3.63E-57 T 29-03-2018 AM354_RS16960 b2e049140e0d412f858e15fc43094382 209 Pfam PF05494 MlaC protein 30 196 4.1E-54 T 29-03-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC AM354_RS16960 b2e049140e0d412f858e15fc43094382 209 Gene3D G3DSA:3.10.450.50 72 170 1.9E-20 T 29-03-2018 AM354_RS16960 b2e049140e0d412f858e15fc43094382 209 Gene3D G3DSA:3.10.450.50 24 71 2.2E-5 T 29-03-2018 AM354_RS16960 b2e049140e0d412f858e15fc43094382 209 PIRSF PIRSF004649 1 209 1.1E-61 T 29-03-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC AM354_RS04545 505e061f2a238b902922f72251dbe8a5 309 Pfam PF13407 Periplasmic binding protein domain 27 283 3.0E-58 T 29-03-2018 IPR025997 Periplasmic binding protein AM354_RS04545 505e061f2a238b902922f72251dbe8a5 309 Gene3D G3DSA:3.40.50.2300 26 135 5.4E-21 T 29-03-2018 AM354_RS04545 505e061f2a238b902922f72251dbe8a5 309 Gene3D G3DSA:3.40.50.2300 136 309 3.7E-45 T 29-03-2018 AM354_RS04545 505e061f2a238b902922f72251dbe8a5 309 SUPERFAMILY SSF53822 23 303 8.1E-82 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS18825 408c2965e9f1efcc47703ffefa6d8718 307 SUPERFAMILY SSF56601 8 307 9.54E-114 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM354_RS18825 408c2965e9f1efcc47703ffefa6d8718 307 Hamap MF_00313 Glutaminase [glsA]. 6 307 46.963 T 29-03-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 AM354_RS18825 408c2965e9f1efcc47703ffefa6d8718 307 Gene3D G3DSA:3.40.710.10 3 307 2.6E-123 T 29-03-2018 AM354_RS18825 408c2965e9f1efcc47703ffefa6d8718 307 TIGRFAM TIGR03814 Gln_ase: glutaminase A 10 307 1.3E-129 T 29-03-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 AM354_RS18825 408c2965e9f1efcc47703ffefa6d8718 307 Pfam PF04960 Glutaminase 24 307 2.9E-112 T 29-03-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 AM354_RS03240 ab9dd242d60f8f89d5820e41579df137 366 Pfam PF01594 AI-2E family transporter 15 345 9.1E-50 T 29-03-2018 IPR002549 Transmembrane protein TqsA-like AM354_RS08575 23dc917a80085bfa0c926623ffd2f5fc 228 SUPERFAMILY SSF52540 6 227 3.9E-63 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS08575 23dc917a80085bfa0c926623ffd2f5fc 228 Pfam PF00005 ABC transporter 27 174 8.7E-30 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM354_RS08575 23dc917a80085bfa0c926623ffd2f5fc 228 Gene3D G3DSA:3.40.50.300 2 228 3.7E-59 T 29-03-2018 AM354_RS08575 23dc917a80085bfa0c926623ffd2f5fc 228 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM354_RS08575 23dc917a80085bfa0c926623ffd2f5fc 228 SMART SM00382 35 221 2.2E-12 T 29-03-2018 IPR003593 AAA+ ATPase domain AM354_RS18215 7c1be64d77d19315ce00f2b2f9d95ce7 566 Gene3D G3DSA:3.90.1530.10 26 142 3.0E-12 T 29-03-2018 AM354_RS18215 7c1be64d77d19315ce00f2b2f9d95ce7 566 TIGRFAM TIGR03764 ICE_PFGI_1_parB: integrating conjugative element, PFGI_1 class, ParB family protein 27 292 4.1E-115 T 29-03-2018 IPR022304 Integrating conjugative element, PFGI-1, ParB AM354_RS18215 7c1be64d77d19315ce00f2b2f9d95ce7 566 SUPERFAMILY SSF110849 35 138 3.66E-9 T 29-03-2018 IPR003115 ParB/Sulfiredoxin AM354_RS17960 f6c80153fda18a534749129b39e5e9af 91 Pfam PF02583 Metal-sensitive transcriptional repressor 7 87 2.0E-22 T 29-03-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 AM354_RS23935 eeeb7ff799f726fd337a7f939b88d83e 121 Pfam PF01219 Prokaryotic diacylglycerol kinase 18 118 1.1E-30 T 29-03-2018 IPR000829 DAGK family GO:0004143|GO:0008654|GO:0016020 KEGG: 00500+2.7.1.10|KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 AM354_RS23935 eeeb7ff799f726fd337a7f939b88d83e 121 ProSitePatterns PS01069 Prokaryotic diacylglycerol kinase signature. 71 82 - T 29-03-2018 IPR000829 DAGK family GO:0004143|GO:0008654|GO:0016020 KEGG: 00500+2.7.1.10|KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 AM354_RS23935 eeeb7ff799f726fd337a7f939b88d83e 121 Gene3D G3DSA:1.10.3830.10 8 120 1.0E-34 T 29-03-2018 IPR000829 DAGK family GO:0004143|GO:0008654|GO:0016020 KEGG: 00500+2.7.1.10|KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 AM354_RS21875 701789b640203f449309a96b4e39b44c 60 Pfam PF11119 Protein of unknown function (DUF2633) 1 56 1.3E-28 T 29-03-2018 IPR022576 Protein of unknown function DUF2633 AM354_RS21875 701789b640203f449309a96b4e39b44c 60 ProDom PD053432 MEMBRANE TRANSMEMBRANE YFGG INNER EXPORTED Y1396 PRECURSOR SIGNAL 2 36 2.0E-6 T 29-03-2018 IPR022576 Protein of unknown function DUF2633 AM354_RS05165 382f653309479cea2525bf0c5f470d34 374 Gene3D G3DSA:3.30.9.10 64 307 3.9E-28 T 29-03-2018 AM354_RS05165 382f653309479cea2525bf0c5f470d34 374 SUPERFAMILY SSF51905 309 365 4.92E-38 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS05165 382f653309479cea2525bf0c5f470d34 374 SUPERFAMILY SSF51905 7 212 4.92E-38 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS05165 382f653309479cea2525bf0c5f470d34 374 SUPERFAMILY SSF54373 212 307 2.35E-9 T 29-03-2018 AM354_RS05165 382f653309479cea2525bf0c5f470d34 374 Pfam PF01266 FAD dependent oxidoreductase 8 347 8.2E-48 T 29-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AM354_RS05165 382f653309479cea2525bf0c5f470d34 374 Gene3D G3DSA:3.40.50.720 2 63 2.6E-4 T 29-03-2018 AM354_RS16580 915f290c09fd664304b2ba06073ab163 135 Gene3D G3DSA:3.10.180.10 1 135 1.4E-18 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS16580 915f290c09fd664304b2ba06073ab163 135 SUPERFAMILY SSF54593 3 128 1.1E-23 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS08915 c20b9ae286606f11652061e0a1a73313 271 Pfam PF01478 Type IV leader peptidase family 125 228 9.9E-18 T 29-03-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 AM354_RS08915 c20b9ae286606f11652061e0a1a73313 271 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 19 113 2.7E-31 T 29-03-2018 IPR010627 Peptidase A24A, N-terminal AM354_RS08915 c20b9ae286606f11652061e0a1a73313 271 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 190 200 3.2E-19 T 29-03-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial AM354_RS08915 c20b9ae286606f11652061e0a1a73313 271 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 201 212 3.2E-19 T 29-03-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial AM354_RS08915 c20b9ae286606f11652061e0a1a73313 271 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 133 150 3.2E-19 T 29-03-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial AM354_RS08915 c20b9ae286606f11652061e0a1a73313 271 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 213 228 3.2E-19 T 29-03-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial AM354_RS21210 99682288ad08f635136eb21ac81deb92 340 Pfam PF03824 High-affinity nickel-transport protein 75 326 3.5E-39 T 29-03-2018 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 AM354_RS00925 d2850e1f1e85a3acfa7806fefe411ce1 267 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 10 260 5.7E-33 T 29-03-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AM354_RS00925 d2850e1f1e85a3acfa7806fefe411ce1 267 Gene3D G3DSA:3.40.50.970 1 267 2.5E-57 T 29-03-2018 AM354_RS00925 d2850e1f1e85a3acfa7806fefe411ce1 267 SUPERFAMILY SSF52518 3 265 4.67E-69 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold AM354_RS04410 5ce3d4275de11d1e8683f06069e9112d 264 SUPERFAMILY SSF51735 32 252 1.21E-31 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS04410 5ce3d4275de11d1e8683f06069e9112d 264 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 34 207 0.0089 T 29-03-2018 AM354_RS04410 5ce3d4275de11d1e8683f06069e9112d 264 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 156 184 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM354_RS04410 5ce3d4275de11d1e8683f06069e9112d 264 Gene3D G3DSA:3.40.50.720 23 258 4.2E-36 T 29-03-2018 AM354_RS04410 5ce3d4275de11d1e8683f06069e9112d 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 35 52 1.1E-9 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS04410 5ce3d4275de11d1e8683f06069e9112d 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 188 1.1E-9 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS04410 5ce3d4275de11d1e8683f06069e9112d 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 226 246 1.1E-9 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS04410 5ce3d4275de11d1e8683f06069e9112d 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 96 107 1.1E-9 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS04410 5ce3d4275de11d1e8683f06069e9112d 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 192 209 1.1E-9 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS04410 5ce3d4275de11d1e8683f06069e9112d 264 Pfam PF00106 short chain dehydrogenase 34 210 2.6E-17 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM354_RS15805 ae9ee106fff2f21ea8c2801248d680cf 561 SUPERFAMILY SSF55781 234 355 4.61E-6 T 29-03-2018 IPR029016 GAF domain-like AM354_RS15805 ae9ee106fff2f21ea8c2801248d680cf 561 SUPERFAMILY SSF55874 424 556 1.51E-11 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS15805 ae9ee106fff2f21ea8c2801248d680cf 561 Pfam PF06580 Histidine kinase 371 448 1.7E-24 T 29-03-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 AM354_RS15805 ae9ee106fff2f21ea8c2801248d680cf 561 SMART SM00065 218 365 0.0048 T 29-03-2018 IPR003018 GAF domain GO:0005515 AM354_RS15805 ae9ee106fff2f21ea8c2801248d680cf 561 Gene3D G3DSA:3.30.450.40 150 380 2.1E-4 T 29-03-2018 IPR029016 GAF domain-like AM354_RS15805 ae9ee106fff2f21ea8c2801248d680cf 561 Gene3D G3DSA:3.30.565.10 381 558 2.2E-16 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS15805 ae9ee106fff2f21ea8c2801248d680cf 561 Pfam PF07694 5TMR of 5TMR-LYT 28 196 1.1E-55 T 29-03-2018 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 AM354_RS17780 b100a4e151355d68cd4643b12c170fac 120 Pfam PF06953 Arsenical resistance operon trans-acting repressor ArsD 1 120 3.9E-48 T 29-03-2018 IPR010712 Arsenical-resistance operon trans-acting repressor ArsD GO:0003677|GO:0045892|GO:0046685 AM354_RS24490 a3209cbfdcdd37b1dfd4d42e0e449286 132 Pfam PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) 18 120 5.3E-31 T 29-03-2018 IPR019114 Chaperone lipoprotein, PulS/OutS-like AM354_RS08645 1d4a33aba346d532b2e0c76a779f94e5 446 Pfam PF07690 Major Facilitator Superfamily 54 405 4.6E-43 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM354_RS08645 1d4a33aba346d532b2e0c76a779f94e5 446 Gene3D G3DSA:1.20.1250.20 248 446 1.9E-21 T 29-03-2018 AM354_RS08645 1d4a33aba346d532b2e0c76a779f94e5 446 Gene3D G3DSA:1.20.1250.20 17 233 2.4E-36 T 29-03-2018 AM354_RS08645 1d4a33aba346d532b2e0c76a779f94e5 446 SUPERFAMILY SSF103473 16 440 5.1E-80 T 29-03-2018 IPR020846 Major facilitator superfamily domain AM354_RS02685 1e2aaacf5cdcc50c85b1c9f7ecfb62fe 173 SUPERFAMILY SSF55729 11 159 4.03E-29 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS02685 1e2aaacf5cdcc50c85b1c9f7ecfb62fe 173 Pfam PF13302 Acetyltransferase (GNAT) domain 15 150 7.3E-21 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS02685 1e2aaacf5cdcc50c85b1c9f7ecfb62fe 173 Gene3D G3DSA:3.40.630.30 2 169 5.7E-25 T 29-03-2018 AM354_RS03820 7ed5209b36d862031f0a2b0b8aa62806 116 SUPERFAMILY SSF51316 1 113 4.18E-29 T 29-03-2018 IPR011057 Mss4-like AM354_RS03820 7ed5209b36d862031f0a2b0b8aa62806 116 Gene3D G3DSA:3.90.1590.10 1 114 1.9E-25 T 29-03-2018 AM354_RS03820 7ed5209b36d862031f0a2b0b8aa62806 116 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 26 87 1.7E-7 T 29-03-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 AM354_RS22030 1aba4c6836c4d0f8e173eb3137b7b30e 150 SUPERFAMILY SSF55729 24 138 2.32E-17 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS22030 1aba4c6836c4d0f8e173eb3137b7b30e 150 Gene3D G3DSA:3.40.630.30 10 140 3.1E-16 T 29-03-2018 AM354_RS22030 1aba4c6836c4d0f8e173eb3137b7b30e 150 Pfam PF13673 Acetyltransferase (GNAT) domain 37 136 1.6E-6 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS15095 e660e3eebc1013d7bfd8a25606d3a271 305 Pfam PF10124 Mu-like prophage major head subunit gpT 9 295 4.5E-110 T 29-03-2018 IPR018774 Bacteriophage Mu, GpT AM354_RS16205 0486c88417252daa2337d092bebbc9d6 180 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 98 131 3.0E-7 T 29-03-2018 IPR001451 Hexapeptide repeat AM354_RS16205 0486c88417252daa2337d092bebbc9d6 180 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 13 47 1.8E-4 T 29-03-2018 IPR001451 Hexapeptide repeat AM354_RS16205 0486c88417252daa2337d092bebbc9d6 180 SUPERFAMILY SSF51161 5 175 1.3E-43 T 29-03-2018 IPR011004 Trimeric LpxA-like AM354_RS16205 0486c88417252daa2337d092bebbc9d6 180 Gene3D G3DSA:2.160.10.10 2 179 3.1E-38 T 29-03-2018 AM354_RS22785 af63135964d397eef6340df4f9436601 176 Hamap MF_01042 UPF0115 protein YfcN [yfcN]. 1 174 40.259 T 29-03-2018 IPR022990 Uncharacterised protein family UPF0115 AM354_RS22785 af63135964d397eef6340df4f9436601 176 SMART SM00463 95 173 2.9E-20 T 29-03-2018 IPR002625 Smr domain AM354_RS22785 af63135964d397eef6340df4f9436601 176 SUPERFAMILY SSF160443 96 150 4.18E-9 T 29-03-2018 IPR002625 Smr domain AM354_RS22785 af63135964d397eef6340df4f9436601 176 Pfam PF01713 Smr domain 98 169 3.8E-17 T 29-03-2018 IPR002625 Smr domain AM354_RS05050 f58b608ac84e75b57bf802de5dda003e 282 SMART SM00465 29 107 1.1E-9 T 29-03-2018 IPR000305 GIY-YIG nuclease superfamily AM354_RS05050 f58b608ac84e75b57bf802de5dda003e 282 Gene3D G3DSA:3.40.1440.10 16 110 2.6E-17 T 29-03-2018 IPR000305 GIY-YIG nuclease superfamily AM354_RS05050 f58b608ac84e75b57bf802de5dda003e 282 SUPERFAMILY SSF82771 30 106 7.06E-10 T 29-03-2018 IPR000305 GIY-YIG nuclease superfamily AM354_RS14175 ea9d8098ddf5d20d2bf6937d3b4e1cbf 179 Hamap MF_01058 Der GTPase-activating protein YihI [yihI]. 1 173 17.41 T 29-03-2018 IPR007336 Der GTPase activator GO:0005096 AM354_RS14175 ea9d8098ddf5d20d2bf6937d3b4e1cbf 179 Pfam PF04220 Der GTPase activator (YihI) 14 170 4.8E-56 T 29-03-2018 IPR007336 Der GTPase activator GO:0005096 AM354_RS25795 3de0348bb7c2b7cb36918ef1f3d1b01a 466 PIRSF PIRSF006446 2 459 2.2E-227 T 29-03-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 AM354_RS25795 3de0348bb7c2b7cb36918ef1f3d1b01a 466 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 9 437 5.1E-166 T 29-03-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 AM354_RS13770 447651a28f759d132fa0a732798fa3d3 250 SUPERFAMILY SSF51658 3 248 1.27E-63 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM354_RS13770 447651a28f759d132fa0a732798fa3d3 250 Gene3D G3DSA:3.20.20.150 1 249 1.9E-28 T 29-03-2018 AM354_RS17395 5a00e93ac3fc96546ec90806d24d61b0 194 Gene3D G3DSA:3.40.50.1820 3 192 1.5E-16 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS17395 5a00e93ac3fc96546ec90806d24d61b0 194 Pfam PF05728 Uncharacterised protein family (UPF0227) 5 189 1.2E-69 T 29-03-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA AM354_RS17395 5a00e93ac3fc96546ec90806d24d61b0 194 SUPERFAMILY SSF53474 4 189 1.85E-17 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS17230 16e0279d7f535fa5ef4ecde7f501f9db 413 Pfam PF03222 Tryptophan/tyrosine permease family 23 378 4.2E-31 T 29-03-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 AM354_RS07470 7e24f114f517f4b600f529cc493c1d38 335 Pfam PF01032 FecCD transport family 21 332 5.3E-80 T 29-03-2018 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 AM354_RS07470 7e24f114f517f4b600f529cc493c1d38 335 Gene3D G3DSA:1.10.3470.10 3 335 8.3E-65 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS07470 7e24f114f517f4b600f529cc493c1d38 335 SUPERFAMILY SSF81345 5 332 6.93E-72 T 29-03-2018 IPR029022 ABC transporter, BtuC-like AM354_RS10840 ea31e6fc84287868042bada5ca63f748 317 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 285 6.9E-99 T 29-03-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 AM354_RS10840 ea31e6fc84287868042bada5ca63f748 317 Gene3D G3DSA:3.40.50.2300 1 283 3.8E-4 T 29-03-2018 AM354_RS10840 ea31e6fc84287868042bada5ca63f748 317 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 1 287 37.089 T 29-03-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 AM354_RS10840 ea31e6fc84287868042bada5ca63f748 317 Pfam PF02401 LytB protein 3 283 2.2E-92 T 29-03-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 AM354_RS18445 58bf4de956ee824751b8400b3a1e7dcb 171 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 91 102 9.4E-10 T 29-03-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 AM354_RS18445 58bf4de956ee824751b8400b3a1e7dcb 171 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 119 131 9.4E-10 T 29-03-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 AM354_RS18445 58bf4de956ee824751b8400b3a1e7dcb 171 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 80 90 9.4E-10 T 29-03-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 AM354_RS18445 58bf4de956ee824751b8400b3a1e7dcb 171 Gene3D G3DSA:2.10.109.10 49 166 1.2E-23 T 29-03-2018 AM354_RS18445 58bf4de956ee824751b8400b3a1e7dcb 171 SUPERFAMILY SSF51306 46 164 3.31E-31 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AM354_RS18445 58bf4de956ee824751b8400b3a1e7dcb 171 Pfam PF00717 Peptidase S24-like 84 147 2.1E-12 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AM354_RS02500 b77f21b44f3b0e0add724234341210b6 143 Pfam PF08786 DcrB 11 139 7.5E-33 T 29-03-2018 IPR014894 Protein DcrB AM354_RS02500 b77f21b44f3b0e0add724234341210b6 143 SUPERFAMILY SSF55724 5 141 2.51E-33 T 29-03-2018 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich Reactome: R-HSA-5576892 AM354_RS02500 b77f21b44f3b0e0add724234341210b6 143 Gene3D G3DSA:3.40.1000.10 2 143 3.8E-17 T 29-03-2018 AM354_RS11925 57e531d90f641d283929bd8379e8e646 384 Pfam PF12698 ABC-2 family transporter protein 33 368 8.2E-24 T 29-03-2018 AM354_RS11925 57e531d90f641d283929bd8379e8e646 384 Gene3D G3DSA:3.40.1710.10 50 204 1.4E-14 T 29-03-2018 AM354_RS00700 46f40ef4a6a0d6a51e657861fb5d7d83 725 Pfam PF16510 Phage P22-like portal protein 18 683 0.0 T 29-03-2018 IPR032427 Phage P22-like portal protein AM354_RS16360 6324c87ccd3136ae4878869b19c00174 305 Pfam PF01758 Sodium Bile acid symporter family 36 213 9.4E-40 T 29-03-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 AM354_RS01320 fe9110a7a0108949ae869837579539d7 110 SUPERFAMILY SSF103481 6 105 2.48E-20 T 29-03-2018 AM354_RS01320 fe9110a7a0108949ae869837579539d7 110 Pfam PF00893 Small Multidrug Resistance protein 4 94 2.3E-27 T 29-03-2018 IPR000390 Small multidrug resistance protein family GO:0016021 AM354_RS13595 2ee78136eb31bae321ee127d9f379dfb 183 SUPERFAMILY SSF52499 2 180 7.46E-34 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM354_RS13595 2ee78136eb31bae321ee127d9f379dfb 183 Pfam PF00857 Isochorismatase family 4 141 3.3E-21 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM354_RS13595 2ee78136eb31bae321ee127d9f379dfb 183 Gene3D G3DSA:3.40.50.850 1 183 2.5E-33 T 29-03-2018 AM354_RS17325 92ea4a5cece2b37fe23819d8cc4bbdad 217 SUPERFAMILY SSF55821 7 213 3.66E-86 T 29-03-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain AM354_RS17325 92ea4a5cece2b37fe23819d8cc4bbdad 217 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 11 213 43.035 T 29-03-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AM354_RS17325 92ea4a5cece2b37fe23819d8cc4bbdad 217 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 17 208 7.9E-84 T 29-03-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AM354_RS17325 92ea4a5cece2b37fe23819d8cc4bbdad 217 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 14 209 9.0E-83 T 29-03-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AM354_RS17325 92ea4a5cece2b37fe23819d8cc4bbdad 217 Gene3D G3DSA:3.90.870.10 4 217 1.2E-92 T 29-03-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain AM354_RS04350 57d796baddadf5a7d6745ed866533ace 207 SUPERFAMILY SSF89392 37 206 3.02E-54 T 29-03-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX AM354_RS04350 57d796baddadf5a7d6745ed866533ace 207 Hamap MF_00233 Outer-membrane lipoprotein LolB [lolB]. 6 206 29.255 T 29-03-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 AM354_RS04350 57d796baddadf5a7d6745ed866533ace 207 Gene3D G3DSA:2.50.20.10 30 207 4.2E-54 T 29-03-2018 AM354_RS04350 57d796baddadf5a7d6745ed866533ace 207 TIGRFAM TIGR00548 lolB: outer membrane lipoprotein LolB 8 205 5.1E-74 T 29-03-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 AM354_RS04350 57d796baddadf5a7d6745ed866533ace 207 Pfam PF03550 Outer membrane lipoprotein LolB 51 204 1.1E-47 T 29-03-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 AM354_RS20800 51e60db2761d79e685eec0842c5db159 338 TIGRFAM TIGR01551 major_capsid_P2: phage major capsid protein, P2 family 9 317 2.1E-98 T 29-03-2018 IPR006441 Bacteriophage P2, GpN, major capsid GO:0019028 AM354_RS20800 51e60db2761d79e685eec0842c5db159 338 Pfam PF05125 Phage major capsid protein, P2 family 12 324 8.5E-107 T 29-03-2018 IPR006441 Bacteriophage P2, GpN, major capsid GO:0019028 AM354_RS23050 a326b7ee12564bb4e96b15381f73974c 93 SUPERFAMILY SSF52794 1 88 2.09E-21 T 29-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AM354_RS23050 a326b7ee12564bb4e96b15381f73974c 93 Gene3D G3DSA:3.40.50.2300 1 92 2.6E-20 T 29-03-2018 AM354_RS23050 a326b7ee12564bb4e96b15381f73974c 93 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 2 83 1.3E-17 T 29-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AM354_RS22595 1a08ecdf8fac5e9358f895921ff4a466 179 SUPERFAMILY SSF55729 2 171 7.39E-47 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS22595 1a08ecdf8fac5e9358f895921ff4a466 179 Pfam PF13302 Acetyltransferase (GNAT) domain 7 147 2.4E-26 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS22595 1a08ecdf8fac5e9358f895921ff4a466 179 Gene3D G3DSA:3.40.630.30 1 179 1.6E-36 T 29-03-2018 AM354_RS18050 4acf809277239e1347390219df821262 469 Gene3D G3DSA:1.20.5.1070 25 88 1.7E-6 T 29-03-2018 AM354_RS18050 4acf809277239e1347390219df821262 469 SUPERFAMILY SSF57997 27 81 9.81E-7 T 29-03-2018 AM354_RS18050 4acf809277239e1347390219df821262 469 Pfam PF11471 Maltoporin periplasmic N-terminal extension 3 54 1.3E-16 T 29-03-2018 IPR021570 LamB-type porin N-terminal domain AM354_RS18050 4acf809277239e1347390219df821262 469 Pfam PF16966 Porin-like glycoporin RafY 104 469 7.5E-187 T 29-03-2018 IPR016963 Glycoporin RafY AM354_RS20780 1960268c2d93b3a6e0af2eb980be2b55 90 Pfam PF04606 Ogr/Delta-like zinc finger 8 53 1.9E-16 T 29-03-2018 IPR007684 Zinc finger, Ogr/Delta-type AM354_RS21380 591fc7bce9e4522f445be6c48c1236a5 94 Gene3D G3DSA:1.10.10.10 1 73 5.2E-6 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS14755 8b997bc9be4356b4909de686c994f279 32 Pfam PF08046 IlvGEDA operon leader peptide 1 32 1.2E-20 T 29-03-2018 IPR012567 IlvGEDA operon leader peptide GO:0009082 AM354_RS15565 2e7d6f6d83f5a1ec374ba0a157955a40 696 Pfam PF02446 4-alpha-glucanotransferase 149 667 1.5E-132 T 29-03-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 AM354_RS15565 2e7d6f6d83f5a1ec374ba0a157955a40 696 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 101 688 1.6E-244 T 29-03-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 AM354_RS15565 2e7d6f6d83f5a1ec374ba0a157955a40 696 SUPERFAMILY SSF51445 611 685 2.31E-150 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily AM354_RS15565 2e7d6f6d83f5a1ec374ba0a157955a40 696 SUPERFAMILY SSF51445 143 573 2.31E-150 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily AM354_RS15565 2e7d6f6d83f5a1ec374ba0a157955a40 696 Gene3D G3DSA:3.20.20.80 139 690 4.0E-161 T 29-03-2018 AM354_RS03175 2ce5d34022b5154c3ba136af8272eaba 101 Gene3D G3DSA:2.60.120.10 3 97 7.5E-8 T 29-03-2018 IPR014710 RmlC-like jelly roll fold AM354_RS03175 2ce5d34022b5154c3ba136af8272eaba 101 SUPERFAMILY SSF51182 12 97 1.63E-11 T 29-03-2018 IPR011051 RmlC-like cupin domain AM354_RS05465 6d9181f2c0ab49bc79ce1e813905d05e 175 Pfam PF01638 HxlR-like helix-turn-helix 20 104 2.0E-20 T 29-03-2018 IPR002577 Helix-turn-helix, HxlR type AM354_RS05465 6d9181f2c0ab49bc79ce1e813905d05e 175 Gene3D G3DSA:1.10.10.10 1 168 1.5E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS05465 6d9181f2c0ab49bc79ce1e813905d05e 175 SUPERFAMILY SSF46785 6 107 6.71E-33 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS15385 fed658c20f0d68d7dca97f6e09c96c04 393 Gene3D G3DSA:3.60.70.12 51 392 1.4E-97 T 29-03-2018 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 AM354_RS15385 fed658c20f0d68d7dca97f6e09c96c04 393 Pfam PF03576 Peptidase family S58 58 384 8.4E-65 T 29-03-2018 IPR005321 Peptidase S58, DmpA AM354_RS15385 fed658c20f0d68d7dca97f6e09c96c04 393 SUPERFAMILY SSF56266 51 383 6.8E-62 T 29-03-2018 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 AM354_RS25740 33b651d99b3055279c5e310b4a7a4cdd 338 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 233 9.8E-28 T 29-03-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AM354_RS25740 33b651d99b3055279c5e310b4a7a4cdd 338 Gene3D G3DSA:3.40.50.720 1 336 9.3E-59 T 29-03-2018 AM354_RS25740 33b651d99b3055279c5e310b4a7a4cdd 338 SUPERFAMILY SSF51735 298 333 2.38E-62 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS25740 33b651d99b3055279c5e310b4a7a4cdd 338 SUPERFAMILY SSF51735 1 270 2.38E-62 T 29-03-2018 IPR016040 NAD(P)-binding domain AM354_RS01935 7bd00d216d1adcf34d39b1fee22ba1c8 119 Pfam PF07377 Protein of unknown function (DUF1493) 1 108 2.0E-28 T 29-03-2018 IPR010862 Protein of unknown function DUF1493 AM354_RS03925 564821835a5b573db39aa215a7304660 448 SUPERFAMILY SSF88874 283 400 1.83E-14 T 29-03-2018 AM354_RS03925 564821835a5b573db39aa215a7304660 448 SUPERFAMILY SSF88874 430 447 1.83E-14 T 29-03-2018 AM354_RS03925 564821835a5b573db39aa215a7304660 448 Pfam PF12571 Phage tail-collar fibre protein 5 145 4.2E-19 T 29-03-2018 IPR022225 Phage tail fibre protein AM354_RS05275 3597aafa9db24c981a54bbf57acbeca5 307 SUPERFAMILY SSF103481 52 151 4.71E-12 T 29-03-2018 AM354_RS05275 3597aafa9db24c981a54bbf57acbeca5 307 Pfam PF00892 EamA-like transporter family 159 289 2.7E-14 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM354_RS05275 3597aafa9db24c981a54bbf57acbeca5 307 Pfam PF00892 EamA-like transporter family 21 147 3.0E-13 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM354_RS05275 3597aafa9db24c981a54bbf57acbeca5 307 SUPERFAMILY SSF103481 199 293 1.83E-11 T 29-03-2018 AM354_RS25345 ca83d4a69ca8815ffd13e451d8d0e62b 233 Hamap MF_00415 Flagellar L-ring protein [flgH]. 5 231 27.151 T 29-03-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 AM354_RS25345 ca83d4a69ca8815ffd13e451d8d0e62b 233 Pfam PF02107 Flagellar L-ring protein 48 232 5.2E-60 T 29-03-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 AM354_RS25345 ca83d4a69ca8815ffd13e451d8d0e62b 233 PRINTS PR01008 Flagellar L-ring protein signature 147 162 7.8E-35 T 29-03-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 AM354_RS25345 ca83d4a69ca8815ffd13e451d8d0e62b 233 PRINTS PR01008 Flagellar L-ring protein signature 74 86 7.8E-35 T 29-03-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 AM354_RS25345 ca83d4a69ca8815ffd13e451d8d0e62b 233 PRINTS PR01008 Flagellar L-ring protein signature 173 189 7.8E-35 T 29-03-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 AM354_RS25345 ca83d4a69ca8815ffd13e451d8d0e62b 233 PRINTS PR01008 Flagellar L-ring protein signature 194 208 7.8E-35 T 29-03-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 AM354_RS25345 ca83d4a69ca8815ffd13e451d8d0e62b 233 PRINTS PR01008 Flagellar L-ring protein signature 210 224 7.8E-35 T 29-03-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 AM354_RS22185 64f7178924ba9f8209b74185508efb1f 108 Pfam PF05106 Phage holin family (Lysis protein S) 5 101 6.1E-28 T 29-03-2018 IPR006481 Bacteriophage lambda, GpS, holin AM354_RS22185 64f7178924ba9f8209b74185508efb1f 108 TIGRFAM TIGR01594 holin_lambda: phage holin, lambda family 5 104 3.6E-23 T 29-03-2018 IPR006481 Bacteriophage lambda, GpS, holin AM354_RS10465 cb8373683f9945174cd45a8e7db8a3d5 284 Pfam PF17113 Regulatory signalling modulator protein AmpE 1 283 1.1E-158 T 29-03-2018 IPR031347 Protein AmpE AM354_RS25605 185b256300e7dc43ce1ce894742a3ed1 351 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 130 351 3.9E-43 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS25605 185b256300e7dc43ce1ce894742a3ed1 351 Gene3D G3DSA:1.10.3720.10 10 340 1.3E-42 T 29-03-2018 AM354_RS25605 185b256300e7dc43ce1ce894742a3ed1 351 SUPERFAMILY SSF161098 107 176 3.4E-20 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS25605 185b256300e7dc43ce1ce894742a3ed1 351 SUPERFAMILY SSF161098 215 336 3.4E-20 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS07445 0a99441c986549c80c55ba4980fdbfa2 67 Pfam PF11903 ParD-like antitoxin of type II bacterial toxin-antitoxin system 1 58 1.7E-22 T 29-03-2018 IPR021831 ParD-like antitoxin of type II bacterial toxin-antitoxin system AM354_RS20065 198f71873f72b0f08e59411acc0f8376 378 PIRSF PIRSF019422 1 365 1.5E-81 T 29-03-2018 IPR026044 Membrane-bound lytic murein transglycosylase A AM354_RS20065 198f71873f72b0f08e59411acc0f8376 378 Pfam PF06725 3D domain 278 355 1.8E-24 T 29-03-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 AM354_RS20065 198f71873f72b0f08e59411acc0f8376 378 Gene3D G3DSA:2.40.240.50 57 259 4.5E-58 T 29-03-2018 AM354_RS20065 198f71873f72b0f08e59411acc0f8376 378 SUPERFAMILY SSF50685 25 354 6.98E-109 T 29-03-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain AM354_RS20065 198f71873f72b0f08e59411acc0f8376 378 Pfam PF03562 MltA specific insert domain 95 258 8.4E-38 T 29-03-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 AM354_RS20065 198f71873f72b0f08e59411acc0f8376 378 SMART SM00925 125 258 8.9E-70 T 29-03-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 AM354_RS02435 49dbed6cbe12c5fe3c692a499e790d91 149 Gene3D G3DSA:1.10.287.100 106 142 1.1E-10 T 29-03-2018 AM354_RS02435 49dbed6cbe12c5fe3c692a499e790d91 149 Gene3D G3DSA:1.10.10.10 3 105 8.8E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS02435 49dbed6cbe12c5fe3c692a499e790d91 149 SUPERFAMILY SSF46785 10 142 6.83E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS02435 49dbed6cbe12c5fe3c692a499e790d91 149 Pfam PF13463 Winged helix DNA-binding domain 36 99 7.5E-10 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM354_RS02435 49dbed6cbe12c5fe3c692a499e790d91 149 SMART SM00347 25 127 6.4E-18 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM354_RS18440 bc736c52c26ce44ee64640e1d25212e2 507 Pfam PF07916 TraG-like protein, N-terminal region 8 482 9.4E-102 T 29-03-2018 IPR012931 TraG-like, N-terminal AM354_RS12015 f91376429cc8863451093c86dcebc1ce 111 Pfam PF03840 Preprotein translocase SecG subunit 5 72 5.6E-22 T 29-03-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AM354_RS12015 f91376429cc8863451093c86dcebc1ce 111 PRINTS PR01651 Protein-export SecG membrane protein signature 38 54 2.2E-42 T 29-03-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AM354_RS12015 f91376429cc8863451093c86dcebc1ce 111 PRINTS PR01651 Protein-export SecG membrane protein signature 54 76 2.2E-42 T 29-03-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AM354_RS12015 f91376429cc8863451093c86dcebc1ce 111 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 2.2E-42 T 29-03-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AM354_RS12015 f91376429cc8863451093c86dcebc1ce 111 PRINTS PR01651 Protein-export SecG membrane protein signature 23 37 2.2E-42 T 29-03-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AM354_RS12015 f91376429cc8863451093c86dcebc1ce 111 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 3 73 7.8E-27 T 29-03-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AM354_RS07460 fb4d1a17d434f1f7c170c4480d08fdf2 141 SUPERFAMILY SSF55785 19 115 3.32E-28 T 29-03-2018 IPR000014 PAS domain AM354_RS07460 fb4d1a17d434f1f7c170c4480d08fdf2 141 Gene3D G3DSA:3.40.50.10600 1 132 4.0E-28 T 29-03-2018 AM354_RS07460 fb4d1a17d434f1f7c170c4480d08fdf2 141 Pfam PF08447 PAS fold 30 114 8.9E-12 T 29-03-2018 IPR013655 PAS fold-3 GO:0005515 AM354_RS07460 fb4d1a17d434f1f7c170c4480d08fdf2 141 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 17 119 4.2E-14 T 29-03-2018 IPR000014 PAS domain AM354_RS07460 fb4d1a17d434f1f7c170c4480d08fdf2 141 SMART SM00091 5 73 1.7E-5 T 29-03-2018 IPR000014 PAS domain AM354_RS16490 c8dda8164ec89eb3d2dd4114e0bed3ce 72 Pfam PF09583 Phage shock protein G (Phageshock_PspG) 1 64 4.8E-26 T 29-03-2018 IPR014318 Phage shock protein, PspG AM354_RS16490 c8dda8164ec89eb3d2dd4114e0bed3ce 72 TIGRFAM TIGR02975 phageshock_pspG: phage shock protein G 2 65 4.8E-25 T 29-03-2018 IPR014318 Phage shock protein, PspG AM354_RS09050 edfbc6426f46c720a319d0c8fa5d6cde 232 PIRSF PIRSF006293 1 226 5.5E-85 T 29-03-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 AM354_RS09050 edfbc6426f46c720a319d0c8fa5d6cde 232 Gene3D G3DSA:3.40.50.620 1 232 2.1E-51 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS09050 edfbc6426f46c720a319d0c8fa5d6cde 232 Pfam PF06508 Queuosine biosynthesis protein QueC 3 214 4.8E-82 T 29-03-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 AM354_RS09050 edfbc6426f46c720a319d0c8fa5d6cde 232 SUPERFAMILY SSF52402 1 216 1.65E-65 T 29-03-2018 AM354_RS09050 edfbc6426f46c720a319d0c8fa5d6cde 232 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 4 207 8.2E-85 T 29-03-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 AM354_RS09050 edfbc6426f46c720a319d0c8fa5d6cde 232 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 2 220 50.435 T 29-03-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 AM354_RS25065 2990122a4da75b39a7b11cd39defeee2 120 Pfam PF16695 Type VI secretion system (T6SS), amidase immunity protein 29 110 2.4E-20 T 29-03-2018 IPR032032 Type VI secretion system (T6SS), amidase immunity protein AM354_RS18355 5eefe5493cc75ee9afcd4acb696d490b 80 Pfam PF11660 Protein of unknown function (DUF3262) 3 79 2.1E-29 T 29-03-2018 IPR021676 Protein of unknown function DUF3262 AM354_RS18355 5eefe5493cc75ee9afcd4acb696d490b 80 TIGRFAM TIGR03758 conj_TIGR03758: integrating conjugative element protein, PFL_4701 family 4 80 4.8E-27 T 29-03-2018 IPR021676 Protein of unknown function DUF3262 AM354_RS10065 2cb127163228f050c066e55f7154afce 73 Pfam PF16080 Bacteriophage holin family HP1 2 53 1.9E-13 T 29-03-2018 IPR032118 Bacteriophage holin HP1 family AM354_RS06305 894704d671356d6c0b94b8d6ad302b9f 376 Gene3D G3DSA:3.40.50.2000 48 175 0.0012 T 29-03-2018 AM354_RS06305 894704d671356d6c0b94b8d6ad302b9f 376 Gene3D G3DSA:3.40.50.2000 176 368 2.7E-43 T 29-03-2018 AM354_RS06305 894704d671356d6c0b94b8d6ad302b9f 376 Pfam PF13439 Glycosyltransferase Family 4 83 173 1.0E-14 T 29-03-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193 AM354_RS06305 894704d671356d6c0b94b8d6ad302b9f 376 SUPERFAMILY SSF53756 15 374 8.72E-73 T 29-03-2018 AM354_RS06305 894704d671356d6c0b94b8d6ad302b9f 376 Pfam PF00534 Glycosyl transferases group 1 198 352 4.1E-29 T 29-03-2018 IPR001296 Glycosyl transferase, family 1 AM354_RS25520 d0217c3da64afed5f1ba087b0d700bec 220 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 109 5.3E-34 T 29-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 AM354_RS25520 d0217c3da64afed5f1ba087b0d700bec 220 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 214 1.2E-26 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS25520 d0217c3da64afed5f1ba087b0d700bec 220 Gene3D G3DSA:1.10.3720.10 5 220 6.3E-47 T 29-03-2018 AM354_RS25520 d0217c3da64afed5f1ba087b0d700bec 220 SUPERFAMILY SSF161098 13 206 1.7E-51 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS10300 00d63fc261a5fb4fa125e635e9173595 108 Pfam PF12084 Protein of unknown function (DUF3561) 1 107 2.0E-48 T 29-03-2018 IPR022721 Protein of unknown function DUF3561 AM354_RS10300 00d63fc261a5fb4fa125e635e9173595 108 ProDom PD070788 MEMBRANE OXIDASE SUBUNIT CYTOCHROME YGBE INNER STY3057 TRANSMEMBRANE 1 108 3.0E-28 T 29-03-2018 IPR022721 Protein of unknown function DUF3561 AM354_RS02450 e40e3b58a5ecd8eb82cf41fc44f8bd67 112 Gene3D G3DSA:2.40.128.20 11 106 6.7E-21 T 29-03-2018 IPR012674 Calycin AM354_RS02450 e40e3b58a5ecd8eb82cf41fc44f8bd67 112 Pfam PF10703 MoaF N-terminal domain 15 88 5.3E-6 T 29-03-2018 IPR024724 Molybdenum cofactor biosynthesis protein F, N-terminal AM354_RS07675 d037d2fd49a557e9dbbaa15772d7155a 368 Gene3D G3DSA:3.40.1710.10 38 188 1.4E-26 T 29-03-2018 AM354_RS07675 d037d2fd49a557e9dbbaa15772d7155a 368 Pfam PF12698 ABC-2 family transporter protein 25 356 1.6E-48 T 29-03-2018 AM354_RS07675 d037d2fd49a557e9dbbaa15772d7155a 368 PRINTS PR00164 ABC-2 type transport system membrane protein signature 310 329 2.1E-7 T 29-03-2018 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AM354_RS07675 d037d2fd49a557e9dbbaa15772d7155a 368 PRINTS PR00164 ABC-2 type transport system membrane protein signature 253 277 2.1E-7 T 29-03-2018 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AM354_RS07675 d037d2fd49a557e9dbbaa15772d7155a 368 PRINTS PR00164 ABC-2 type transport system membrane protein signature 290 309 2.1E-7 T 29-03-2018 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AM354_RS02065 8e500936f8a9a9597a80221f7d49a686 126 Pfam PF14534 Domain of unknown function (DUF4440) 11 116 6.7E-18 T 29-03-2018 IPR027843 Domain of unknown function DUF4440 AM354_RS02065 8e500936f8a9a9597a80221f7d49a686 126 Gene3D G3DSA:3.10.450.50 2 123 1.8E-28 T 29-03-2018 AM354_RS02065 8e500936f8a9a9597a80221f7d49a686 126 SUPERFAMILY SSF54427 8 123 1.91E-15 T 29-03-2018 IPR032710 NTF2-like domain AM354_RS00555 086b0355fb79364c42b65ce87d5a883f 313 Pfam PF04909 Amidohydrolase 4 313 9.3E-41 T 29-03-2018 IPR006680 Amidohydrolase-related GO:0016787 AM354_RS00555 086b0355fb79364c42b65ce87d5a883f 313 SUPERFAMILY SSF51556 1 313 1.23E-69 T 29-03-2018 IPR032466 Metal-dependent hydrolase AM354_RS00555 086b0355fb79364c42b65ce87d5a883f 313 Gene3D G3DSA:3.20.20.140 1 313 1.8E-53 T 29-03-2018 AM354_RS24055 b427551781f5edb181b8ed6485eb36cf 379 Gene3D G3DSA:1.10.10.10 259 379 4.9E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS24055 b427551781f5edb181b8ed6485eb36cf 379 Pfam PF13884 Chaperone of endosialidase 270 317 3.9E-11 T 29-03-2018 IPR030392 Intramolecular chaperone auto-processing domain AM354_RS21615 c39530a3eb9c61d74884b3f8913bd0b8 171 SUPERFAMILY SSF53955 12 170 3.99E-57 T 29-03-2018 IPR023346 Lysozyme-like domain AM354_RS21615 c39530a3eb9c61d74884b3f8913bd0b8 171 Pfam PF00959 Phage lysozyme 56 163 1.1E-29 T 29-03-2018 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 AM354_RS21615 c39530a3eb9c61d74884b3f8913bd0b8 171 Gene3D G3DSA:1.10.530.40 1 171 4.9E-45 T 29-03-2018 IPR023347 Lysozyme domain GO:0003796 AM354_RS06295 a5f46ae443dd879909a1afe87fb50ed1 433 SUPERFAMILY SSF51445 30 341 1.49E-52 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily AM354_RS06295 a5f46ae443dd879909a1afe87fb50ed1 433 Gene3D G3DSA:3.20.20.80 22 370 2.6E-43 T 29-03-2018 AM354_RS00945 3a8b44606fc0fdcd8a8e79f8f6daa4b1 208 Pfam PF10054 Predicted periplasmic lipoprotein (DUF2291) 9 203 8.6E-45 T 29-03-2018 IPR014582 Uncharacterised conserved protein UCP033535, periplasmic lipoprotein AM354_RS00945 3a8b44606fc0fdcd8a8e79f8f6daa4b1 208 SUPERFAMILY SSF141318 67 204 1.31E-13 T 29-03-2018 IPR014582 Uncharacterised conserved protein UCP033535, periplasmic lipoprotein AM354_RS24525 01b908de785b8ae43718c30c4ebd2150 212 SUPERFAMILY SSF49401 55 212 7.46E-28 T 29-03-2018 IPR008966 Adhesion domain AM354_RS24525 01b908de785b8ae43718c30c4ebd2150 212 Gene3D G3DSA:2.60.40.1090 52 212 3.2E-21 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS01915 34f36fed42b713e626b722f3b74a97f6 226 Gene3D G3DSA:3.40.50.150 10 222 3.0E-24 T 29-03-2018 AM354_RS01915 34f36fed42b713e626b722f3b74a97f6 226 SUPERFAMILY SSF53335 11 216 3.22E-28 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS01915 34f36fed42b713e626b722f3b74a97f6 226 Pfam PF13489 Methyltransferase domain 29 185 3.5E-13 T 29-03-2018 AM354_RS03145 570533b89629c332557aa2768f07ba2b 97 Pfam PF11720 Peptidase inhibitor I78 family 38 97 1.7E-9 T 29-03-2018 IPR021719 Proteinase inhibitor I78 AM354_RS00890 bdc41be23d43da270f43d1035a4c48a8 83 Pfam PF10692 Protein of unknown function (DUF2498) 5 81 5.4E-44 T 29-03-2018 IPR019633 Protein of unknown function DUF2498 AM354_RS09550 793373b8ee82b8bac2fbb5332fe054dc 142 Gene3D G3DSA:3.40.50.620 3 141 1.5E-8 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS09550 793373b8ee82b8bac2fbb5332fe054dc 142 SUPERFAMILY SSF52402 4 136 3.45E-10 T 29-03-2018 AM354_RS08510 0396236903332dfc659f5f61471eba3a 178 SUPERFAMILY SSF54427 48 163 1.05E-17 T 29-03-2018 IPR032710 NTF2-like domain AM354_RS08510 0396236903332dfc659f5f61471eba3a 178 Gene3D G3DSA:3.10.450.50 15 168 3.0E-11 T 29-03-2018 AM354_RS04020 ff384b1b090ed14e6b2b2dff127ee1ed 144 Pfam PF03245 Bacteriophage Rz lysis protein 33 143 5.5E-29 T 29-03-2018 IPR004929 Spanin, inner membrane subunit GO:0019076|GO:0019835 AM354_RS04020 ff384b1b090ed14e6b2b2dff127ee1ed 144 Gene3D G3DSA:1.20.1170.10 23 144 9.3E-4 T 29-03-2018 AM354_RS01455 9c582fd2aff2b35210a4d6afddf3dc67 464 Gene3D G3DSA:3.40.50.1220 289 463 6.0E-90 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM354_RS01455 9c582fd2aff2b35210a4d6afddf3dc67 464 SUPERFAMILY SSF52467 289 463 3.07E-77 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM354_RS01455 9c582fd2aff2b35210a4d6afddf3dc67 464 Pfam PF02233 NAD(P) transhydrogenase beta subunit 7 460 5.0E-203 T 29-03-2018 IPR034300 NADP transhydrogenase beta-like domain KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 AM354_RS01455 9c582fd2aff2b35210a4d6afddf3dc67 464 PIRSF PIRSF000204 1 464 2.2E-238 T 29-03-2018 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 AM354_RS20900 74de0171b3a9c40a911bf704237262e5 551 SUPERFAMILY SSF69349 340 497 2.12E-8 T 29-03-2018 AM354_RS20900 74de0171b3a9c40a911bf704237262e5 551 Gene3D G3DSA:2.40.50.230 261 348 2.8E-11 T 29-03-2018 IPR006531 Gp5 N-terminal AM354_RS20900 74de0171b3a9c40a911bf704237262e5 551 SUPERFAMILY SSF69255 258 349 5.49E-15 T 29-03-2018 AM354_RS07175 90eb13b4fd9b54741f4efcfdae1af99a 154 Pfam PF07308 Protein of unknown function (DUF1456) 3 70 1.1E-25 T 29-03-2018 IPR009921 Domain of unknown function DUF1456 AM354_RS07175 90eb13b4fd9b54741f4efcfdae1af99a 154 Pfam PF07308 Protein of unknown function (DUF1456) 86 153 7.4E-26 T 29-03-2018 IPR009921 Domain of unknown function DUF1456 AM354_RS05250 238b31c5ab6b0363142d6f1cec6acc6b 100 SUPERFAMILY SSF54909 1 91 2.95E-28 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel AM354_RS05250 238b31c5ab6b0363142d6f1cec6acc6b 100 Gene3D G3DSA:3.30.70.100 1 100 1.3E-18 T 29-03-2018 AM354_RS05250 238b31c5ab6b0363142d6f1cec6acc6b 100 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 74 1.8E-14 T 29-03-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain AM354_RS00735 b5297011792dcf659e22e72b771184e1 216 ProDom PD104351 DNA TRANSFER GP7 INJECTION AAF75053 GENE DIRECT ACCESSION PRECURSOR GENBANK 32 140 1.0E-34 T 29-03-2018 AM354_RS13080 68f826d414a3c7a3ab88e796d54b1f06 90 Pfam PF06611 Protein of unknown function (DUF1145) 1 58 2.4E-28 T 29-03-2018 IPR009525 Protein of unknown function DUF1145 AM354_RS08685 d9707508bce9164683ca851e347aaab7 153 Gene3D G3DSA:2.40.50.140 85 153 9.0E-16 T 29-03-2018 AM354_RS08685 d9707508bce9164683ca851e347aaab7 153 Pfam PF01957 NfeD-like C-terminal, partner-binding 13 149 3.0E-27 T 29-03-2018 IPR002810 NfeD-like, C-terminal domain AM354_RS08685 d9707508bce9164683ca851e347aaab7 153 SUPERFAMILY SSF141322 94 151 3.92E-7 T 29-03-2018 AM354_RS08705 960e121b446b585382c0e0553098f51e 159 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 2 156 2.4E-55 T 29-03-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC AM354_RS08705 960e121b446b585382c0e0553098f51e 159 Pfam PF04073 Aminoacyl-tRNA editing domain 31 146 2.5E-24 T 29-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AM354_RS08705 960e121b446b585382c0e0553098f51e 159 PIRSF PIRSF006181 1 159 6.1E-56 T 29-03-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC AM354_RS08705 960e121b446b585382c0e0553098f51e 159 SUPERFAMILY SSF55826 2 155 4.97E-45 T 29-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AM354_RS08705 960e121b446b585382c0e0553098f51e 159 Gene3D G3DSA:3.90.960.10 1 159 1.3E-41 T 29-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AM354_RS22095 147269e6438c91536e05a80ddb094e95 61 Pfam PF13980 Uncharacterised protein family (UPF0370) 1 61 6.0E-37 T 29-03-2018 IPR020910 Uncharacterised protein family UPF0370 AM354_RS22095 147269e6438c91536e05a80ddb094e95 61 Hamap MF_01566 UPF0370 protein YpfN [ypfN]. 1 61 26.444 T 29-03-2018 IPR020910 Uncharacterised protein family UPF0370 AM354_RS08105 50159397ae26b3793b9220af4e305fd5 69 Pfam PF10725 Protein of unknown function (DUF2517) 5 64 2.2E-36 T 29-03-2018 IPR019663 Uncharacterised protein YbfA AM354_RS18985 1afab83359725ac09b25239a95d2883f 115 ProDom PD074041 YACC EXPORTED PRECURSOR SIGNAL PERIPLASMIC Y0776 SIMILAR ECS0126 STY0189 ESCHERICHIA 15 113 2.0E-46 T 29-03-2018 AM354_RS18985 1afab83359725ac09b25239a95d2883f 115 Pfam PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) 24 106 5.8E-11 T 29-03-2018 IPR019114 Chaperone lipoprotein, PulS/OutS-like AM354_RS12725 07b6253fc9dccabc0069256dbebc2524 154 Gene3D G3DSA:3.90.420.10 26 154 6.4E-18 T 29-03-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 AM354_RS12725 07b6253fc9dccabc0069256dbebc2524 154 SUPERFAMILY SSF56524 33 117 1.69E-6 T 29-03-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 AM354_RS07345 3e25209b38e1bcc199ed7e972f643b05 211 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 3 164 8.7E-10 T 29-03-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain AM354_RS07345 3e25209b38e1bcc199ed7e972f643b05 211 Gene3D G3DSA:3.40.50.300 1 210 5.2E-28 T 29-03-2018 AM354_RS07345 3e25209b38e1bcc199ed7e972f643b05 211 SUPERFAMILY SSF52540 1 209 9.01E-33 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS07345 3e25209b38e1bcc199ed7e972f643b05 211 PIRSF PIRSF009320 1 211 9.2E-57 T 29-03-2018 AM354_RS18160 a54af84c375e7a2313c797d97f3da2e1 145 SUPERFAMILY SSF49401 1 144 1.69E-25 T 29-03-2018 IPR008966 Adhesion domain AM354_RS18160 a54af84c375e7a2313c797d97f3da2e1 145 Gene3D G3DSA:2.60.40.1090 1 145 1.4E-17 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS09100 00da48603a3f742c778153d4df14482b 192 Pfam PF03923 Uncharacterized lipoprotein 29 188 5.4E-54 T 29-03-2018 IPR005619 Uncharacterised protein family, YajG AM354_RS07780 0d002605eeeb8fcfea7dfba5d7ce3019 229 SUPERFAMILY SSF161098 5 219 7.72E-52 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS07780 0d002605eeeb8fcfea7dfba5d7ce3019 229 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 26 227 3.5E-24 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS07780 0d002605eeeb8fcfea7dfba5d7ce3019 229 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 13 220 7.0E-75 T 29-03-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 AM354_RS07780 0d002605eeeb8fcfea7dfba5d7ce3019 229 Gene3D G3DSA:1.10.3720.10 3 228 5.0E-39 T 29-03-2018 AM354_RS02975 cac457aa26442b7849a22e06871a7603 130 Pfam PF12680 SnoaL-like domain 8 114 6.3E-14 T 29-03-2018 IPR009959 Polyketide cyclase SnoaL-like domain AM354_RS02975 cac457aa26442b7849a22e06871a7603 130 Gene3D G3DSA:3.10.450.50 3 130 1.4E-19 T 29-03-2018 AM354_RS02975 cac457aa26442b7849a22e06871a7603 130 SUPERFAMILY SSF54427 1 128 1.84E-36 T 29-03-2018 IPR032710 NTF2-like domain AM354_RS01870 9c635c0696d91f6ec5cac71f0b1f52c4 410 Pfam PF04346 Ethanolamine utilisation protein, EutH 5 384 4.4E-111 T 29-03-2018 IPR007441 Ethanolamine utilisation protein EutH GO:0016021|GO:0034228|GO:0034229 AM354_RS01870 9c635c0696d91f6ec5cac71f0b1f52c4 410 PIRSF PIRSF019466 2 407 1.8E-133 T 29-03-2018 IPR007441 Ethanolamine utilisation protein EutH GO:0016021|GO:0034228|GO:0034229 AM354_RS02185 fc96688bc97c6c963a3c6ec42a0dea39 349 ProSitePatterns PS00869 Renal dipeptidase active site. 129 151 - T 29-03-2018 IPR000180 Membrane dipeptidase, active site GO:0006508|GO:0008235|GO:0008239|GO:0016805 MetaCyc: PWY-7533|Reactome: R-HSA-2142691|Reactome: R-HSA-5423646 AM354_RS02185 fc96688bc97c6c963a3c6ec42a0dea39 349 Pfam PF01244 Membrane dipeptidase (Peptidase family M19) 8 344 2.8E-97 T 29-03-2018 IPR008257 Renal dipeptidase family GO:0006508|GO:0016805 MetaCyc: PWY-7533|Reactome: R-HSA-2142691|Reactome: R-HSA-5423646 AM354_RS02185 fc96688bc97c6c963a3c6ec42a0dea39 349 Gene3D G3DSA:3.20.20.140 272 349 3.4E-18 T 29-03-2018 AM354_RS02185 fc96688bc97c6c963a3c6ec42a0dea39 349 Gene3D G3DSA:3.20.20.140 3 271 4.7E-80 T 29-03-2018 AM354_RS02185 fc96688bc97c6c963a3c6ec42a0dea39 349 SUPERFAMILY SSF51556 7 347 5.83E-88 T 29-03-2018 IPR032466 Metal-dependent hydrolase AM354_RS25805 14b933a23d4669898df80b082d949d89 324 Pfam PF07859 alpha/beta hydrolase fold 90 296 3.0E-69 T 29-03-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 AM354_RS25805 14b933a23d4669898df80b082d949d89 324 ProSitePatterns PS01173 Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 89 105 - T 29-03-2018 IPR002168 Lipase, GDXG, putative histidine active site GO:0008152|GO:0016787 Reactome: R-HSA-163560 AM354_RS25805 14b933a23d4669898df80b082d949d89 324 Gene3D G3DSA:3.40.50.1820 3 324 1.4E-56 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS25805 14b933a23d4669898df80b082d949d89 324 SUPERFAMILY SSF53474 31 323 4.65E-66 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS05725 04fbe96ece37d48005cb696f634064de 430 PIRSF PIRSF001529 1 430 1.0E-179 T 29-03-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AM354_RS05725 04fbe96ece37d48005cb696f634064de 430 SUPERFAMILY SSF46589 1 112 1.99E-29 T 29-03-2018 IPR010978 tRNA-binding arm GO:0000166 AM354_RS05725 04fbe96ece37d48005cb696f634064de 430 PRINTS PR00981 Seryl-tRNA synthetase signature 322 335 8.3E-34 T 29-03-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AM354_RS05725 04fbe96ece37d48005cb696f634064de 430 PRINTS PR00981 Seryl-tRNA synthetase signature 282 295 8.3E-34 T 29-03-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AM354_RS05725 04fbe96ece37d48005cb696f634064de 430 PRINTS PR00981 Seryl-tRNA synthetase signature 339 355 8.3E-34 T 29-03-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AM354_RS05725 04fbe96ece37d48005cb696f634064de 430 PRINTS PR00981 Seryl-tRNA synthetase signature 270 282 8.3E-34 T 29-03-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AM354_RS05725 04fbe96ece37d48005cb696f634064de 430 PRINTS PR00981 Seryl-tRNA synthetase signature 357 373 8.3E-34 T 29-03-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AM354_RS05725 04fbe96ece37d48005cb696f634064de 430 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 428 41.162 T 29-03-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AM354_RS05725 04fbe96ece37d48005cb696f634064de 430 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 107 8.8E-30 T 29-03-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 AM354_RS05725 04fbe96ece37d48005cb696f634064de 430 SUPERFAMILY SSF55681 116 425 1.6E-99 T 29-03-2018 AM354_RS05725 04fbe96ece37d48005cb696f634064de 430 Gene3D G3DSA:3.30.930.10 105 430 2.6E-95 T 29-03-2018 AM354_RS05725 04fbe96ece37d48005cb696f634064de 430 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 228 406 5.9E-36 T 29-03-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM354_RS05725 04fbe96ece37d48005cb696f634064de 430 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 423 1.3E-177 T 29-03-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AM354_RS05725 04fbe96ece37d48005cb696f634064de 430 Gene3D G3DSA:1.10.287.40 2 104 3.0E-22 T 29-03-2018 AM354_RS00730 c755609a0456050a0273a92a23502ca5 153 Pfam PF11039 Protein of unknown function (DUF2824) 3 153 7.6E-63 T 29-03-2018 IPR022568 Protein of unknown function DUF2824 AM354_RS00730 c755609a0456050a0273a92a23502ca5 153 ProDom PD302408 P31 ECS3234 GENOME 1 150 1.0E-70 T 29-03-2018 IPR022568 Protein of unknown function DUF2824 AM354_RS00730 c755609a0456050a0273a92a23502ca5 153 Gene3D G3DSA:3.40.630.30 15 151 9.6E-5 T 29-03-2018 AM354_RS19080 a84fdf52b5717b4a909b0949d4a7560d 235 Hamap MF_00095 Sugar fermentation stimulation protein A [sfsA]. 1 234 55.822 T 29-03-2018 IPR005224 Sugar fermentation stimulation protein AM354_RS19080 a84fdf52b5717b4a909b0949d4a7560d 235 Pfam PF03749 Sugar fermentation stimulation protein 13 225 5.9E-76 T 29-03-2018 IPR005224 Sugar fermentation stimulation protein AM354_RS19080 a84fdf52b5717b4a909b0949d4a7560d 235 TIGRFAM TIGR00230 sfsA: sugar fermentation stimulation protein 4 226 7.6E-81 T 29-03-2018 IPR005224 Sugar fermentation stimulation protein AM354_RS22605 d8a302f6d9f2d4462bc5038dc03ee81c 174 SUPERFAMILY SSF81342 3 174 1.26E-28 T 29-03-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 AM354_RS22605 d8a302f6d9f2d4462bc5038dc03ee81c 174 Pfam PF01292 Prokaryotic cytochrome b561 4 173 1.0E-24 T 29-03-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 AM354_RS22605 d8a302f6d9f2d4462bc5038dc03ee81c 174 Gene3D G3DSA:1.20.950.20 1 174 4.8E-26 T 29-03-2018 AM354_RS25560 2ef2d2b03468bf09138206d308b83853 300 Pfam PF05118 Aspartyl/Asparaginyl beta-hydroxylase 69 222 2.5E-48 T 29-03-2018 IPR007803 Aspartyl/asparaginy/proline hydroxylase GO:0018193 AM354_RS25560 2ef2d2b03468bf09138206d308b83853 300 Gene3D G3DSA:2.60.120.330 60 244 9.1E-45 T 29-03-2018 IPR027443 Isopenicillin N synthase-like AM354_RS25560 2ef2d2b03468bf09138206d308b83853 300 SUPERFAMILY SSF51197 95 223 4.67E-18 T 29-03-2018 AM354_RS13035 c6b88f5481aedcb3dde8afc312d176be 371 Pfam PF13458 Periplasmic binding protein 27 353 4.1E-60 T 29-03-2018 IPR028081 Leucine-binding protein domain AM354_RS13035 c6b88f5481aedcb3dde8afc312d176be 371 Gene3D G3DSA:3.40.50.2300 197 352 3.2E-17 T 29-03-2018 AM354_RS13035 c6b88f5481aedcb3dde8afc312d176be 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 68 86 7.3E-63 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AM354_RS13035 c6b88f5481aedcb3dde8afc312d176be 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 255 273 7.3E-63 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AM354_RS13035 c6b88f5481aedcb3dde8afc312d176be 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 331 346 7.3E-63 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AM354_RS13035 c6b88f5481aedcb3dde8afc312d176be 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 278 291 7.3E-63 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AM354_RS13035 c6b88f5481aedcb3dde8afc312d176be 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 49 65 7.3E-63 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AM354_RS13035 c6b88f5481aedcb3dde8afc312d176be 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 27 43 7.3E-63 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AM354_RS13035 c6b88f5481aedcb3dde8afc312d176be 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 89 99 7.3E-63 T 29-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AM354_RS13035 c6b88f5481aedcb3dde8afc312d176be 371 Gene3D G3DSA:3.40.50.2300 10 196 4.5E-36 T 29-03-2018 AM354_RS13035 c6b88f5481aedcb3dde8afc312d176be 371 SUPERFAMILY SSF53822 25 369 2.29E-87 T 29-03-2018 IPR028082 Periplasmic binding protein-like I AM354_RS24600 91c222ef084863b9a9864796231a7534 132 Gene3D G3DSA:3.20.80.10 1 132 2.7E-24 T 29-03-2018 IPR011256 Regulatory factor, effector binding domain AM354_RS24600 91c222ef084863b9a9864796231a7534 132 SUPERFAMILY SSF55136 2 122 6.02E-10 T 29-03-2018 AM354_RS24600 91c222ef084863b9a9864796231a7534 132 Pfam PF14526 Integron-associated effector binding protein 2 121 3.1E-12 T 29-03-2018 IPR029441 Integron-associated effector binding protein AM354_RS24600 91c222ef084863b9a9864796231a7534 132 SMART SM00871 1 132 1.5E-9 T 29-03-2018 IPR010499 Bacterial transcription activator, effector binding AM354_RS09515 51f4498546cdf04ab80719dd34571c22 302 SUPERFAMILY SSF53850 90 298 6.15E-38 T 29-03-2018 AM354_RS09515 51f4498546cdf04ab80719dd34571c22 302 Gene3D G3DSA:3.40.190.10 93 179 3.4E-13 T 29-03-2018 AM354_RS09515 51f4498546cdf04ab80719dd34571c22 302 Gene3D G3DSA:3.40.190.10 180 267 1.4E-19 T 29-03-2018 AM354_RS09515 51f4498546cdf04ab80719dd34571c22 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 1.8E-14 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM354_RS09515 51f4498546cdf04ab80719dd34571c22 302 Pfam PF03466 LysR substrate binding domain 89 296 2.1E-37 T 29-03-2018 IPR005119 LysR, substrate-binding AM354_RS09515 51f4498546cdf04ab80719dd34571c22 302 Gene3D G3DSA:1.10.10.10 2 85 3.1E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS09515 51f4498546cdf04ab80719dd34571c22 302 SUPERFAMILY SSF46785 4 88 4.54E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS25555 080e2ac6b5cf41383292e71b73fcbe24 262 Pfam PF02562 PhoH-like protein 57 261 7.2E-78 T 29-03-2018 IPR003714 PhoH-like protein GO:0005524 AM354_RS25555 080e2ac6b5cf41383292e71b73fcbe24 262 SUPERFAMILY SSF52540 56 239 4.34E-31 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM354_RS25555 080e2ac6b5cf41383292e71b73fcbe24 262 Gene3D G3DSA:3.40.50.300 53 262 1.7E-22 T 29-03-2018 AM354_RS13650 a11eee0b7ddef2cdeeaaefcbc375c2da 216 Pfam PF08786 DcrB 71 212 1.7E-7 T 29-03-2018 IPR014894 Protein DcrB AM354_RS13650 a11eee0b7ddef2cdeeaaefcbc375c2da 216 Gene3D G3DSA:3.40.1000.10 63 216 2.3E-14 T 29-03-2018 AM354_RS11090 7666a0a0fa73d9ff62b4ce9d7208e94a 53 Pfam PF07043 Protein of unknown function (DUF1328) 6 44 4.8E-13 T 29-03-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 AM354_RS11090 7666a0a0fa73d9ff62b4ce9d7208e94a 53 PIRSF PIRSF036466 1 53 1.4E-19 T 29-03-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 AM354_RS11090 7666a0a0fa73d9ff62b4ce9d7208e94a 53 Hamap MF_01361 UPF0391 membrane protein YtjA [ytjA]. 1 48 18.186 T 29-03-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 AM354_RS06650 77678660a3bb3ffe9bad3fc5db5865f7 679 ProSitePatterns PS01303 BCCT family of transporters signature. 320 329 - T 29-03-2018 IPR018093 BCCT transporter, conserved site GO:0005215|GO:0006810|GO:0016020 AM354_RS06650 77678660a3bb3ffe9bad3fc5db5865f7 679 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 19 503 3.7E-176 T 29-03-2018 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 AM354_RS06650 77678660a3bb3ffe9bad3fc5db5865f7 679 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 57 504 1.1E-175 T 29-03-2018 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 AM354_RS03945 e9fe64141b138d2a82dd51ca4f49c86a 206 TIGRFAM TIGR01644 phage_P2_V: phage baseplate assembly protein V 9 175 2.1E-27 T 29-03-2018 IPR013046 Phage baseplate assembly protein V/Gp45 AM354_RS03945 e9fe64141b138d2a82dd51ca4f49c86a 206 Pfam PF04717 Type VI secretion system, phage-baseplate injector 8 119 8.6E-26 T 29-03-2018 IPR006531 Gp5 N-terminal AM354_RS09315 a90d3c3ee7b1d257891dae414ba8c415 410 Gene3D G3DSA:3.60.21.10 67 282 1.6E-22 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like AM354_RS09315 a90d3c3ee7b1d257891dae414ba8c415 410 Gene3D G3DSA:3.60.21.10 1 66 2.0E-15 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like AM354_RS09315 a90d3c3ee7b1d257891dae414ba8c415 410 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 1 259 1.1E-77 T 29-03-2018 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 AM354_RS09315 a90d3c3ee7b1d257891dae414ba8c415 410 SUPERFAMILY SSF56300 1 141 9.79E-58 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like AM354_RS09315 a90d3c3ee7b1d257891dae414ba8c415 410 SUPERFAMILY SSF56300 170 339 9.79E-58 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like AM354_RS09315 a90d3c3ee7b1d257891dae414ba8c415 410 Pfam PF12320 Type 5 capsule protein repressor C-terminal domain 282 379 4.6E-24 T 29-03-2018 IPR026843 Nuclease SbcCD subunit D, C-terminal domain AM354_RS09315 a90d3c3ee7b1d257891dae414ba8c415 410 Pfam PF00149 Calcineurin-like phosphoesterase 1 93 9.0E-13 T 29-03-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AM354_RS08035 2d87ebcab9b4fec3b3a017298c8f9bc4 115 Gene3D G3DSA:1.20.1300.10 1 115 3.1E-18 T 29-03-2018 AM354_RS08035 2d87ebcab9b4fec3b3a017298c8f9bc4 115 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 10 113 3.1E-36 T 29-03-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 AM354_RS08035 2d87ebcab9b4fec3b3a017298c8f9bc4 115 PIRSF PIRSF000169 1 115 4.5E-42 T 29-03-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 AM354_RS08035 2d87ebcab9b4fec3b3a017298c8f9bc4 115 SUPERFAMILY SSF81343 3 114 1.09E-29 T 29-03-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM354_RS23730 690a4a007cea9bad04c82af42a3cf53b 455 PIRSF PIRSF006060 7 453 9.7E-75 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM354_RS23730 690a4a007cea9bad04c82af42a3cf53b 455 Pfam PF00324 Amino acid permease 27 424 4.8E-36 T 29-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 AM354_RS25420 d1c3da8e43dcbf722e60890f23c3cc9c 410 PRINTS PR01007 Flagellar hook-length control protein signature 310 325 2.5E-16 T 29-03-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 AM354_RS25420 d1c3da8e43dcbf722e60890f23c3cc9c 410 PRINTS PR01007 Flagellar hook-length control protein signature 112 135 2.5E-16 T 29-03-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 AM354_RS25420 d1c3da8e43dcbf722e60890f23c3cc9c 410 PRINTS PR01007 Flagellar hook-length control protein signature 325 348 2.5E-16 T 29-03-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 AM354_RS25420 d1c3da8e43dcbf722e60890f23c3cc9c 410 Pfam PF02120 Flagellar hook-length control protein FliK 277 358 6.3E-20 T 29-03-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal AM354_RS13800 d6680de406b954881199fb8d8102f0bf 69 Gene3D G3DSA:1.10.1220.10 1 49 1.2E-9 T 29-03-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AM354_RS13800 d6680de406b954881199fb8d8102f0bf 69 Pfam PF01402 Ribbon-helix-helix protein, copG family 3 36 6.5E-7 T 29-03-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 AM354_RS15060 f199b3405f04e6555504a75864965453 116 Pfam PF10618 Phage tail tube protein 2 114 2.9E-35 T 29-03-2018 IPR019596 Bacteriophage Mu, GpM, tail tube AM354_RS06665 fa09d3663c495348a9e6b9cca78dee78 258 Gene3D G3DSA:3.90.420.10 46 258 2.4E-56 T 29-03-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 AM354_RS06665 fa09d3663c495348a9e6b9cca78dee78 258 SUPERFAMILY SSF56524 56 257 1.15E-62 T 29-03-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 AM354_RS06665 fa09d3663c495348a9e6b9cca78dee78 258 Pfam PF00174 Oxidoreductase molybdopterin binding domain 104 247 1.8E-31 T 29-03-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 AM354_RS24360 8c154e799c0086bd027245a9b9b9fe71 255 SUPERFAMILY SSF161098 54 245 2.29E-26 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS24360 8c154e799c0086bd027245a9b9b9fe71 255 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 74 247 5.2E-27 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS24360 8c154e799c0086bd027245a9b9b9fe71 255 Gene3D G3DSA:1.10.3720.10 44 249 1.5E-19 T 29-03-2018 AM354_RS00775 94438ce644e48706081f1a5ab820ed68 217 Pfam PF02677 Uncharacterized BCR, COG1636 18 192 1.2E-63 T 29-03-2018 IPR003828 Probable epoxyqueuosine reductase QueH AM354_RS00775 94438ce644e48706081f1a5ab820ed68 217 Gene3D G3DSA:3.40.50.620 42 190 3.5E-4 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS08700 587c4045fac4bf6d964b5466486ffa2f 268 Pfam PF01963 TraB family 31 268 9.5E-43 T 29-03-2018 IPR002816 Pheromone shutdown, TraB AM354_RS13505 644be18f3c3c80a2fd7841f4c4f84b4f 514 Gene3D G3DSA:3.30.565.10 371 514 1.7E-15 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS13505 644be18f3c3c80a2fd7841f4c4f84b4f 514 Pfam PF05231 MASE1 9 282 5.4E-17 T 29-03-2018 IPR007895 MASE1 AM354_RS13505 644be18f3c3c80a2fd7841f4c4f84b4f 514 Pfam PF07730 Histidine kinase 310 374 2.3E-10 T 29-03-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AM354_RS13505 644be18f3c3c80a2fd7841f4c4f84b4f 514 SUPERFAMILY SSF55874 396 505 5.59E-13 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS13505 644be18f3c3c80a2fd7841f4c4f84b4f 514 SMART SM00387 413 508 2.8E-7 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM354_RS06760 48c1d73839c10a3b82b42ed9e1a41efc 419 SUPERFAMILY SSF142764 3 415 2.48E-126 T 29-03-2018 AM354_RS06760 48c1d73839c10a3b82b42ed9e1a41efc 419 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 252 410 5.7E-41 T 29-03-2018 IPR031475 Putative nucleotide-binding C-terminal domain AM354_RS06760 48c1d73839c10a3b82b42ed9e1a41efc 419 Gene3D G3DSA:3.40.50.10840 2 236 2.4E-75 T 29-03-2018 IPR010737 Putative sugar-binding, N-terminal domain AM354_RS06760 48c1d73839c10a3b82b42ed9e1a41efc 419 Pfam PF07005 Putative sugar-binding N-terminal domain 3 226 7.4E-69 T 29-03-2018 IPR010737 Putative sugar-binding, N-terminal domain AM354_RS24010 2746b4de905bb8ce4cfaa9c7a0c56fbf 228 Gene3D G3DSA:2.60.120.330 34 222 9.2E-36 T 29-03-2018 IPR027443 Isopenicillin N synthase-like AM354_RS24010 2746b4de905bb8ce4cfaa9c7a0c56fbf 228 SUPERFAMILY SSF51197 62 205 1.7E-17 T 29-03-2018 AM354_RS24010 2746b4de905bb8ce4cfaa9c7a0c56fbf 228 Pfam PF05118 Aspartyl/Asparaginyl beta-hydroxylase 40 199 1.4E-40 T 29-03-2018 IPR007803 Aspartyl/asparaginy/proline hydroxylase GO:0018193 AM354_RS25890 a311fa7fe833e182f8cb5d7928979ce1 47 Pfam PF13998 MgrB protein 19 47 6.1E-18 T 29-03-2018 IPR020907 PhoP/PhoQ regulator MgrB AM354_RS11370 464b2a1c48166a3c616de5ddedd79afe 458 PIRSF PIRSF006060 1 445 5.9E-53 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM354_RS11370 464b2a1c48166a3c616de5ddedd79afe 458 Pfam PF13520 Amino acid permease 14 430 6.5E-35 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM354_RS00035 6d6ee9609b80468d9d30a755226714c3 63 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 1 52 2.7E-23 T 29-03-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain AM354_RS00035 6d6ee9609b80468d9d30a755226714c3 63 Pfam PF09723 Zinc ribbon domain 1 41 1.4E-17 T 29-03-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain AM354_RS00035 6d6ee9609b80468d9d30a755226714c3 63 SMART SM00834 1 42 1.1E-20 T 29-03-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain AM354_RS07015 5ee8be9fadf6e9d901bdf62784f40f57 257 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 73 243 1.5E-24 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS07015 5ee8be9fadf6e9d901bdf62784f40f57 257 SUPERFAMILY SSF161098 50 238 3.27E-35 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS07015 5ee8be9fadf6e9d901bdf62784f40f57 257 Gene3D G3DSA:1.10.3720.10 5 249 3.8E-31 T 29-03-2018 AM354_RS12265 79b76e67c4d487dfdf959477d1947c66 102 Pfam PF07338 Protein of unknown function (DUF1471) 47 102 3.6E-19 T 29-03-2018 IPR010854 Domain of unknown function DUF1471 AM354_RS12265 79b76e67c4d487dfdf959477d1947c66 102 SUPERFAMILY SSF159871 5 102 2.09E-19 T 29-03-2018 IPR010854 Domain of unknown function DUF1471 AM354_RS12265 79b76e67c4d487dfdf959477d1947c66 102 Gene3D G3DSA:3.30.1660.10 35 102 3.0E-20 T 29-03-2018 IPR025543 Dodecin-like AM354_RS09570 9da226d1c2c13d5b52df3662f882e803 237 Gene3D G3DSA:2.60.120.620 14 237 5.5E-27 T 29-03-2018 AM354_RS09570 9da226d1c2c13d5b52df3662f882e803 237 Pfam PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA 65 236 3.1E-87 T 29-03-2018 IPR018655 Protein of unknown function DUF2086 AM354_RS18320 a117940bc2dc365a1b6deb2e042de777 177 Pfam PF11072 Protein of unknown function (DUF2859) 23 171 7.7E-52 T 29-03-2018 IPR021300 Integrating conjugative element protein, PFL4695 AM354_RS18320 a117940bc2dc365a1b6deb2e042de777 177 TIGRFAM TIGR03765 ICE_PFL_4695: integrating conjugative element protein, PFL_4695 family 69 173 2.7E-40 T 29-03-2018 IPR021300 Integrating conjugative element protein, PFL4695 AM354_RS17855 c29fc152d7f672c92992e620b4d35510 65 Pfam PF11666 Protein of unknown function (DUF2933) 10 60 5.9E-24 T 29-03-2018 IPR021682 Protein of unknown function DUF2933 AM354_RS20400 56bc7d680d4e38692dd1a92daa9d4939 229 Pfam PF03942 DTW domain 30 214 8.6E-43 T 29-03-2018 IPR005636 DTW AM354_RS20400 56bc7d680d4e38692dd1a92daa9d4939 229 SMART SM01144 27 219 8.0E-76 T 29-03-2018 IPR005636 DTW AM354_RS24925 e395fe4ad112cebd1a0024af6d31d31e 305 Pfam PF16220 Domain of unknown function (DUF4880) 12 53 4.5E-11 T 29-03-2018 IPR032623 FecR, N-terminal AM354_RS24925 e395fe4ad112cebd1a0024af6d31d31e 305 PIRSF PIRSF018266 1 305 1.1E-68 T 29-03-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component AM354_RS24925 e395fe4ad112cebd1a0024af6d31d31e 305 Pfam PF04773 FecR protein 109 195 4.6E-9 T 29-03-2018 IPR006860 FecR protein AM354_RS01595 02f89e29ab696385a1b8c1bf52e50678 316 Gene3D G3DSA:1.10.3470.10 1 305 4.6E-54 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS01595 02f89e29ab696385a1b8c1bf52e50678 316 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 300 9.3E-51 T 29-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AM354_RS17730 84d7175e29073236d36e47972196bd38 165 SUPERFAMILY SSF55729 2 158 5.4E-30 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS17730 84d7175e29073236d36e47972196bd38 165 Gene3D G3DSA:3.40.630.30 2 164 1.5E-30 T 29-03-2018 AM354_RS17730 84d7175e29073236d36e47972196bd38 165 Pfam PF13420 Acetyltransferase (GNAT) domain 6 153 1.9E-15 T 29-03-2018 AM354_RS11560 4a2316ff266f9fe6868f7c102d3bd78a 289 SUPERFAMILY SSF53448 1 286 9.01E-89 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS11560 4a2316ff266f9fe6868f7c102d3bd78a 289 Pfam PF00483 Nucleotidyl transferase 2 238 6.2E-68 T 29-03-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AM354_RS11560 4a2316ff266f9fe6868f7c102d3bd78a 289 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 2 286 5.6E-155 T 29-03-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 AM354_RS11560 4a2316ff266f9fe6868f7c102d3bd78a 289 Gene3D G3DSA:3.90.550.10 1 289 3.5E-65 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM354_RS22615 5ef31754b450c8f97df7f246496e7976 145 Pfam PF15970 HicB_like antitoxin of bacterial toxin-antitoxin system 5 84 3.0E-24 T 29-03-2018 IPR031807 HicB-like antitoxin of toxin-antitoxin system AM354_RS04535 396e1ba61731e7eac026cbb8495b7127 346 Pfam PF02653 Branched-chain amino acid transport system / permease component 65 335 4.8E-47 T 29-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AM354_RS04535 396e1ba61731e7eac026cbb8495b7127 346 Gene3D G3DSA:1.10.3470.10 50 341 5.6E-37 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS22815 d42ea2bd079a14693fecbbf4e3105028 93 Gene3D G3DSA:1.10.357.10 3 89 1.2E-4 T 29-03-2018 AM354_RS22815 d42ea2bd079a14693fecbbf4e3105028 93 Pfam PF08891 YfcL protein 4 87 3.0E-38 T 29-03-2018 IPR014987 Uncharacterised protein family YfcL AM354_RS08165 8781fb6676916849d23b551c16afc992 95 Pfam PF01402 Ribbon-helix-helix protein, copG family 52 89 1.0E-8 T 29-03-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 AM354_RS08165 8781fb6676916849d23b551c16afc992 95 Gene3D G3DSA:1.10.1220.10 38 92 1.1E-6 T 29-03-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AM354_RS08165 8781fb6676916849d23b551c16afc992 95 SUPERFAMILY SSF47598 51 85 7.12E-5 T 29-03-2018 IPR010985 Ribbon-helix-helix GO:0006355 AM354_RS16570 3ce6ffc630d53e65f920b37ae491ff7d 147 Pfam PF13924 Lipocalin-like domain 7 142 8.7E-44 T 29-03-2018 IPR024311 Lipocalin-like domain AM354_RS06135 b821190db40b7b343772b5aab8fd2781 139 Pfam PF00583 Acetyltransferase (GNAT) family 36 115 7.3E-12 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS06135 b821190db40b7b343772b5aab8fd2781 139 SUPERFAMILY SSF55729 10 137 9.12E-26 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS06135 b821190db40b7b343772b5aab8fd2781 139 Gene3D G3DSA:3.40.630.30 3 139 7.3E-22 T 29-03-2018 AM354_RS09470 45c5678e95369b3f0160b921a4ab1746 256 Pfam PF08241 Methyltransferase domain 50 146 6.3E-26 T 29-03-2018 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AM354_RS09470 45c5678e95369b3f0160b921a4ab1746 256 SUPERFAMILY SSF53335 12 248 1.53E-50 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM354_RS09470 45c5678e95369b3f0160b921a4ab1746 256 Gene3D G3DSA:3.40.50.150 25 251 6.2E-47 T 29-03-2018 AM354_RS07215 647fa99f9ce7def6e30a2395b9ddf8c9 367 Pfam PF05076 Suppressor of fused protein (SUFU) 200 363 1.3E-20 T 29-03-2018 IPR020941 Suppressor of fused-like domain Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5610787|Reactome: R-HSA-5632684 AM354_RS15940 2bb41d3c78619b7b0be34324df3bbb1e 75 Gene3D G3DSA:1.20.5.300 7 53 4.3E-14 T 29-03-2018 AM354_RS15940 2bb41d3c78619b7b0be34324df3bbb1e 75 Hamap MF_00715 Protein SlyX [slyX]. 8 75 16.527 T 29-03-2018 IPR007236 SlyX AM354_RS15940 2bb41d3c78619b7b0be34324df3bbb1e 75 Pfam PF04102 SlyX 11 75 8.4E-23 T 29-03-2018 IPR007236 SlyX AM354_RS22025 caf4793d936631f1ef8567bad758f485 205 Pfam PF01810 LysE type translocator 15 201 1.7E-22 T 29-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AM354_RS10070 e24b43e7870b3fdfbe821b0ae36d115a 171 SUPERFAMILY SSF53955 10 168 1.02E-53 T 29-03-2018 IPR023346 Lysozyme-like domain AM354_RS10070 e24b43e7870b3fdfbe821b0ae36d115a 171 Gene3D G3DSA:1.10.530.40 1 169 2.5E-49 T 29-03-2018 IPR023347 Lysozyme domain GO:0003796 AM354_RS10070 e24b43e7870b3fdfbe821b0ae36d115a 171 Pfam PF00959 Phage lysozyme 53 158 1.6E-17 T 29-03-2018 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 AM354_RS04585 5fe7f97ee7001fefeaa24476aa553864 116 Pfam PF14302 Domain of unknown function (DUF4377) 40 113 2.9E-29 T 29-03-2018 IPR025485 Domain of unknown function DUF4377 AM354_RS13910 974117f8902395b60fff10e2714612f1 188 SUPERFAMILY SSF52218 7 180 1.86E-45 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS13910 974117f8902395b60fff10e2714612f1 188 Pfam PF03358 NADPH-dependent FMN reductase 7 149 1.0E-39 T 29-03-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AM354_RS13910 974117f8902395b60fff10e2714612f1 188 Gene3D G3DSA:3.40.50.360 1 188 1.9E-38 T 29-03-2018 IPR029039 Flavoprotein-like domain AM354_RS22515 72e396200c06e3459df0fb47fca9d288 354 Gene3D G3DSA:3.50.50.60 1 329 2.0E-4 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM354_RS01360 8deab14b662981ff8eb21828d6f58f79 107 Pfam PF07027 Protein of unknown function (DUF1318) 19 107 3.4E-29 T 29-03-2018 IPR008309 Uncharacterised conserved protein UCP025560 AM354_RS01360 8deab14b662981ff8eb21828d6f58f79 107 PIRSF PIRSF025560 1 107 1.9E-37 T 29-03-2018 IPR008309 Uncharacterised conserved protein UCP025560 AM354_RS20765 5b9205dfc1e7ab8a759804a6136b5be6 79 Pfam PF10809 Protein of unknown function (DUF2732) 12 74 2.9E-14 T 29-03-2018 IPR020126 Protein of unknown function DUF2732 AM354_RS26005 e89cf5eb03ca9aa4c5a897477f7bb407 81 Hamap MF_00507 UPF0181 protein YoaH [yoaH]. 1 57 17.575 T 29-03-2018 IPR005371 Uncharacterised protein family UPF0181 AM354_RS26005 e89cf5eb03ca9aa4c5a897477f7bb407 81 ProDom PD026807 UPF0181 YOAH YPTB1650 VV20310 VPA0916 VCA0569 YPO1774/Y2534/YP1619 PLU2693 VVA0806 PM0480 1 46 6.0E-12 T 29-03-2018 IPR005371 Uncharacterised protein family UPF0181 AM354_RS26005 e89cf5eb03ca9aa4c5a897477f7bb407 81 Pfam PF03701 Uncharacterised protein family (UPF0181) 1 49 1.2E-22 T 29-03-2018 IPR005371 Uncharacterised protein family UPF0181 AM354_RS23955 faad2304c3bcfd3727edc0f1c98270ef 117 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 13 106 3.5E-22 T 29-03-2018 IPR009241 Toxin HigB-like AM354_RS25485 cf62d601324c1d3d94da545fc475b1a4 471 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 11 104 6.3E-22 T 29-03-2018 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 AM354_RS25485 cf62d601324c1d3d94da545fc475b1a4 471 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 228 458 6.7E-62 T 29-03-2018 IPR010809 Flagellar hook-associated 2, C-terminal GO:0007155|GO:0009288 AM354_RS25485 cf62d601324c1d3d94da545fc475b1a4 471 Pfam PF07196 Flagellin hook IN motif 129 186 4.1E-9 T 29-03-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 AM354_RS25485 cf62d601324c1d3d94da545fc475b1a4 471 Gene3D G3DSA:2.60.120.260 208 309 0.052 T 29-03-2018 IPR008979 Galactose-binding domain-like AM354_RS20460 166cd80c60d5720e54923e2ae80d32cc 368 Gene3D G3DSA:1.10.3720.10 112 347 2.5E-37 T 29-03-2018 AM354_RS20460 166cd80c60d5720e54923e2ae80d32cc 368 SUPERFAMILY SSF161098 154 336 6.93E-44 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS20460 166cd80c60d5720e54923e2ae80d32cc 368 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 175 340 3.8E-27 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS17885 9aae0c408cb47fc2374cd089bd4cd280 309 Pfam PF05425 Copper resistance protein D 196 300 1.8E-21 T 29-03-2018 IPR008457 Copper resistance protein D GO:0016021 AM354_RS13535 bf235ebfbd3f04f9100881470f8eec66 464 Pfam PF04966 Carbohydrate-selective porin, OprB family 92 464 9.1E-68 T 29-03-2018 IPR007049 Carbohydrate-selective porin OprB GO:0005215|GO:0006810|GO:0016021 AM354_RS13535 bf235ebfbd3f04f9100881470f8eec66 464 Gene3D G3DSA:2.40.160.40 66 260 0.0041 T 29-03-2018 AM354_RS13535 bf235ebfbd3f04f9100881470f8eec66 464 Gene3D G3DSA:2.40.160.40 278 462 0.063 T 29-03-2018 AM354_RS20600 403bc96182615e840d683bac4ad5fde4 60 Pfam PF09926 Uncharacterized small protein (DUF2158) 4 43 1.7E-6 T 29-03-2018 IPR019226 Protein of unknown function DUF2158 AM354_RS14555 546355c3c5f18238d9318b633fea5b73 79 Gene3D G3DSA:1.20.5.370 13 49 4.5E-15 T 29-03-2018 AM354_RS14555 546355c3c5f18238d9318b633fea5b73 79 Gene3D G3DSA:1.20.5.370 50 79 3.0E-11 T 29-03-2018 AM354_RS14555 546355c3c5f18238d9318b633fea5b73 79 Pfam PF06005 Cell division protein ZapB 1 78 9.3E-29 T 29-03-2018 IPR009252 Cell division protein ZapB GO:0005737|GO:0043093|GO:0090529 AM354_RS14555 546355c3c5f18238d9318b633fea5b73 79 Hamap MF_01196 Cell division protein ZapB [zapB]. 1 79 17.883 T 29-03-2018 IPR009252 Cell division protein ZapB GO:0005737|GO:0043093|GO:0090529 AM354_RS16725 1f04230a3b350ba424cb882225bb2d7f 286 Gene3D G3DSA:3.60.110.10 1 275 2.2E-71 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AM354_RS16725 1f04230a3b350ba424cb882225bb2d7f 286 Pfam PF00795 Carbon-nitrogen hydrolase 6 254 7.8E-46 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AM354_RS16725 1f04230a3b350ba424cb882225bb2d7f 286 SUPERFAMILY SSF56317 2 267 1.57E-72 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AM354_RS16725 1f04230a3b350ba424cb882225bb2d7f 286 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 153 173 - T 29-03-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site AM354_RS01185 15a1bfa3535aa995330c4fa3c9c5fd60 321 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 311 6.6E-43 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS01185 15a1bfa3535aa995330c4fa3c9c5fd60 321 Gene3D G3DSA:1.10.3720.10 4 303 2.0E-43 T 29-03-2018 AM354_RS01185 15a1bfa3535aa995330c4fa3c9c5fd60 321 SUPERFAMILY SSF161098 69 138 8.5E-24 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS01185 15a1bfa3535aa995330c4fa3c9c5fd60 321 SUPERFAMILY SSF161098 175 300 8.5E-24 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS15130 8c4cc0548cdfd5082e1ea22b994f96cf 95 Gene3D G3DSA:1.10.10.10 3 79 3.4E-5 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS25020 2a3998104c72450e5738028e0e2e0538 356 Pfam PF06996 Type VI secretion, TssG 33 333 4.5E-102 T 29-03-2018 IPR010732 Type VI secretion, TssG-like AM354_RS25020 2a3998104c72450e5738028e0e2e0538 356 TIGRFAM TIGR03347 VI_chp_1: type VI secretion protein, VC_A0111 family 33 334 1.7E-96 T 29-03-2018 IPR010732 Type VI secretion, TssG-like AM354_RS12170 bd1b639db5c3d9459cd498076be450a2 1272 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 936 1272 2.8E-68 T 29-03-2018 IPR007452 Translocation and assembly module TamB AM354_RS01085 477bb3f28784abbd691df13feaf1c123 118 Pfam PF15586 Immunity protein 8 4 113 8.7E-41 T 29-03-2018 IPR028964 Immunity protein 8 AM354_RS23165 85e1a68e00e0983cb5aed63fc24d4b55 185 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 16 157 6.7E-33 T 29-03-2018 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS02385 9cd8df289bb7d8a6b037b4a271dc8921 44 Pfam PF10766 Multidrug efflux pump-associated protein AcrZ 1 43 9.7E-22 T 29-03-2018 IPR019702 Multidrug efflux pump accessory protein AcrZ GO:0005886|GO:0006855|GO:0015238 AM354_RS11295 184499daa80feb2b2a02c8f602469c46 196 Pfam PF11354 Protein of unknown function (DUF3156) 30 190 1.1E-62 T 29-03-2018 IPR021500 Protein of unknown function DUF3156 AM354_RS13580 69ea0a3f287cfd22ad3a8991a1e67942 146 Gene3D G3DSA:1.20.120.330 20 141 3.7E-7 T 29-03-2018 AM354_RS13725 c88449f905021b46447c7da1ee506c3c 239 Pfam PF11254 Protein of unknown function (DUF3053) 17 235 2.8E-98 T 29-03-2018 IPR021413 Protein of unknown function DUF3053 AM354_RS21895 8f1b756e72444b49b5b033de429b3ab3 549 Gene3D G3DSA:1.10.3720.10 4 534 3.6E-44 T 29-03-2018 AM354_RS21895 8f1b756e72444b49b5b033de429b3ab3 549 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 317 543 1.1E-17 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS21895 8f1b756e72444b49b5b033de429b3ab3 549 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 281 540 2.1E-73 T 29-03-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 AM354_RS21895 8f1b756e72444b49b5b033de429b3ab3 549 SUPERFAMILY SSF161098 264 532 8.76E-38 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS19330 49430ec713300ec469e01869473f44f4 179 Pfam PF09831 Uncharacterized protein conserved in bacteria (DUF2058) 5 179 1.4E-58 T 29-03-2018 IPR018636 Protein of unknown function DUF2058 AM354_RS10235 66b8531fb70888c7167b9ba93a144a29 205 Pfam PF02661 Fic/DOC family 59 158 1.0E-19 T 29-03-2018 IPR003812 Fido domain AM354_RS10235 66b8531fb70888c7167b9ba93a144a29 205 Gene3D G3DSA:1.10.3290.10 2 205 8.3E-39 T 29-03-2018 IPR003812 Fido domain AM354_RS10235 66b8531fb70888c7167b9ba93a144a29 205 SUPERFAMILY SSF140931 42 203 1.44E-36 T 29-03-2018 IPR003812 Fido domain AM354_RS19325 e836fac1e7c6cdc2545949d93e73e05f 325 PIRSF PIRSF034367 1 325 2.0E-196 T 29-03-2018 IPR015004 Protein of unknown function DUF1852 AM354_RS19325 e836fac1e7c6cdc2545949d93e73e05f 325 Pfam PF08908 Domain of unknown function (DUF1852) 1 321 3.7E-184 T 29-03-2018 IPR015004 Protein of unknown function DUF1852 AM354_RS09480 9f5ea7ecff8d43d7ec87b303c11858f7 248 Pfam PF09849 Uncharacterized protein conserved in bacteria (DUF2076) 1 245 1.2E-73 T 29-03-2018 IPR018648 Protein of unknown function DUF2076 AM354_RS14140 039d182eaeffc18f468c29bed32094f7 89 ProDom PD029038 YIHD CYTOPLASMIC ENZYME Y3814 GLYCOGEN YPO0013A HI0845 DIRECT ORF1 UNCHARACTERIZED 1 87 2.0E-38 T 29-03-2018 IPR009383 Protein of unknown function DUF1040 AM354_RS14140 039d182eaeffc18f468c29bed32094f7 89 Pfam PF06288 Protein of unknown function (DUF1040) 1 86 1.1E-45 T 29-03-2018 IPR009383 Protein of unknown function DUF1040 AM354_RS10210 6391d3d7f6dbc8bbcce02511c80aac98 105 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 5 94 1.4E-16 T 29-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AM354_RS10210 6391d3d7f6dbc8bbcce02511c80aac98 105 Gene3D G3DSA:3.40.50.2300 5 105 1.6E-28 T 29-03-2018 AM354_RS10210 6391d3d7f6dbc8bbcce02511c80aac98 105 SUPERFAMILY SSF52794 4 103 2.88E-31 T 29-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AM354_RS15815 d1f22e7403cca4206cab637451e10167 92 TIGRFAM TIGR02385 RelE_StbE: addiction module toxin, RelE/StbE family 2 82 1.5E-8 T 29-03-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family AM354_RS15815 d1f22e7403cca4206cab637451e10167 92 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 4 89 2.2E-14 T 29-03-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family AM354_RS15815 d1f22e7403cca4206cab637451e10167 92 Gene3D G3DSA:3.30.2310.20 1 89 1.1E-4 T 29-03-2018 AM354_RS25130 cf2ee45a0f921d97bbdac73870716df9 176 TIGRFAM TIGR03352 VI_chp_3: type VI secretion lipoprotein, VC_A0113 family 14 144 3.7E-32 T 29-03-2018 IPR017734 Type VI secretion system, lipoprotein SciN AM354_RS25130 cf2ee45a0f921d97bbdac73870716df9 176 Pfam PF12790 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 21 150 1.9E-32 T 29-03-2018 IPR017734 Type VI secretion system, lipoprotein SciN AM354_RS06705 9b5d667222ea284444c1e4494e4de32f 195 Pfam PF16449 Fimbrillin MatB 26 193 2.5E-86 T 29-03-2018 IPR016514 Fimbrial protein MatB AM354_RS15015 c047467be1cce45fda7760b684f29f25 270 Gene3D G3DSA:3.90.1340.10 73 229 2.1E-8 T 29-03-2018 IPR011083 Phage tail collar domain AM354_RS15015 c047467be1cce45fda7760b684f29f25 270 Pfam PF07484 Phage Tail Collar Domain 86 133 4.7E-9 T 29-03-2018 IPR011083 Phage tail collar domain AM354_RS15015 c047467be1cce45fda7760b684f29f25 270 SUPERFAMILY SSF88874 218 269 2.22E-25 T 29-03-2018 AM354_RS15015 c047467be1cce45fda7760b684f29f25 270 SUPERFAMILY SSF88874 81 180 2.22E-25 T 29-03-2018 AM354_RS15410 53675f0e1d831c59279f92216515c58e 436 Pfam PF10797 Protein of unknown function 7 433 3.2E-168 T 29-03-2018 IPR019733 Uncharacterised protein family YhfT AM354_RS09495 66d7f9fb7b75b5d44cb1ede0141e0593 150 Pfam PF04134 Protein of unknown function, DUF393 17 126 1.3E-30 T 29-03-2018 IPR007263 Protein of unknown function DUF393 AM354_RS10525 2e41ed65b216b4620bb4765c15ba7208 176 Hamap MF_01332 Secretion monitor [secM]. 1 176 41.125 T 29-03-2018 IPR009502 Secretion monitor GO:0045182 AM354_RS10525 2e41ed65b216b4620bb4765c15ba7208 176 ProDom PD089227 MONITOR PERIPLASMIC SECRETION PRECURSOR SIGNAL YACA 1 175 2.0E-54 T 29-03-2018 IPR009502 Secretion monitor GO:0045182 AM354_RS10525 2e41ed65b216b4620bb4765c15ba7208 176 PIRSF PIRSF004572 1 176 8.7E-76 T 29-03-2018 IPR009502 Secretion monitor GO:0045182 AM354_RS10525 2e41ed65b216b4620bb4765c15ba7208 176 Pfam PF06558 Secretion monitor precursor protein (SecM) 24 173 7.3E-56 T 29-03-2018 IPR009502 Secretion monitor GO:0045182 AM354_RS05425 83fcc63c7fb1591f4cfd61ad14be15a7 150 Pfam PF03733 Inner membrane component domain 4 53 2.6E-10 T 29-03-2018 IPR005185 Inner membrane component domain AM354_RS05425 83fcc63c7fb1591f4cfd61ad14be15a7 150 Pfam PF03733 Inner membrane component domain 77 127 1.3E-17 T 29-03-2018 IPR005185 Inner membrane component domain AM354_RS05425 83fcc63c7fb1591f4cfd61ad14be15a7 150 PIRSF PIRSF028777 1 139 9.2E-54 T 29-03-2018 IPR031308 Uncharacterised conserved protein UCP028777 AM354_RS21270 539af9d1f809f5496582d61efb192899 276 Pfam PF14581 SseB protein C-terminal domain 149 259 3.2E-36 T 29-03-2018 IPR027945 SseB protein, C-terminal AM354_RS21270 539af9d1f809f5496582d61efb192899 276 Pfam PF07179 SseB protein N-terminal domain 15 133 1.3E-28 T 29-03-2018 IPR009839 SseB protein N-terminal domain AM354_RS17070 87575d03d2f41c4ad1556d2df4af5b1c 191 SMART SM00749 129 191 5.4E-4 T 29-03-2018 IPR014004 Transport-associated and nodulation domain, bacteria AM354_RS17070 87575d03d2f41c4ad1556d2df4af5b1c 191 SMART SM00749 51 114 3.4E-12 T 29-03-2018 IPR014004 Transport-associated and nodulation domain, bacteria AM354_RS17070 87575d03d2f41c4ad1556d2df4af5b1c 191 Pfam PF04972 BON domain 124 190 2.3E-17 T 29-03-2018 IPR007055 BON domain AM354_RS17070 87575d03d2f41c4ad1556d2df4af5b1c 191 Pfam PF04972 BON domain 46 113 1.7E-12 T 29-03-2018 IPR007055 BON domain AM354_RS18145 5cef9edef1d949f656143e643df09059 161 Pfam PF15941 FidL-like putative membrane protein 74 156 2.4E-6 T 29-03-2018 IPR031854 Putative membrane protein FidL-like AM354_RS25070 5ffae518d55f5ab39415f2751fb67d3b 152 Pfam PF16695 Type VI secretion system (T6SS), amidase immunity protein 40 125 1.4E-21 T 29-03-2018 IPR032032 Type VI secretion system (T6SS), amidase immunity protein AM354_RS19010 bfd3c52afb7816c9db6e2c20d2de8a2a 256 PIRSF PIRSF006648 13 253 1.2E-23 T 29-03-2018 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AM354_RS19010 bfd3c52afb7816c9db6e2c20d2de8a2a 256 Pfam PF01061 ABC-2 type transporter 9 218 7.0E-39 T 29-03-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 AM354_RS19010 bfd3c52afb7816c9db6e2c20d2de8a2a 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 176 195 7.5E-8 T 29-03-2018 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AM354_RS19010 bfd3c52afb7816c9db6e2c20d2de8a2a 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 196 215 7.5E-8 T 29-03-2018 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AM354_RS19010 bfd3c52afb7816c9db6e2c20d2de8a2a 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 138 162 7.5E-8 T 29-03-2018 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AM354_RS19010 bfd3c52afb7816c9db6e2c20d2de8a2a 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 58 80 7.5E-8 T 29-03-2018 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AM354_RS15335 e636e0d01aea6f5d7a4183596c87f42a 278 Pfam PF01261 Xylose isomerase-like TIM barrel 24 227 1.2E-11 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM354_RS15335 e636e0d01aea6f5d7a4183596c87f42a 278 Gene3D G3DSA:3.20.20.150 1 278 3.8E-30 T 29-03-2018 AM354_RS15335 e636e0d01aea6f5d7a4183596c87f42a 278 SUPERFAMILY SSF51658 5 277 5.94E-58 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM354_RS06125 787720e2959b9cdf4e19a3bac1645672 206 Pfam PF13417 Glutathione S-transferase, N-terminal domain 8 79 4.3E-15 T 29-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AM354_RS06125 787720e2959b9cdf4e19a3bac1645672 206 Pfam PF13410 Glutathione S-transferase, C-terminal domain 128 189 9.9E-6 T 29-03-2018 AM354_RS06125 787720e2959b9cdf4e19a3bac1645672 206 Gene3D G3DSA:3.40.30.10 1 96 2.0E-29 T 29-03-2018 AM354_RS06125 787720e2959b9cdf4e19a3bac1645672 206 SUPERFAMILY SSF52833 1 85 3.19E-23 T 29-03-2018 IPR012336 Thioredoxin-like fold AM354_RS06125 787720e2959b9cdf4e19a3bac1645672 206 SUPERFAMILY SSF47616 72 199 9.75E-30 T 29-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like AM354_RS06125 787720e2959b9cdf4e19a3bac1645672 206 Gene3D G3DSA:1.20.1050.10 97 204 1.1E-24 T 29-03-2018 AM354_RS22550 7636a21aa1bffe6dc00b1331ea106525 150 Pfam PF05232 Chlorhexidine efflux transporter 74 137 3.4E-25 T 29-03-2018 IPR007896 Chlorhexidine efflux transporter AM354_RS22550 7636a21aa1bffe6dc00b1331ea106525 150 Pfam PF05232 Chlorhexidine efflux transporter 6 68 6.1E-26 T 29-03-2018 IPR007896 Chlorhexidine efflux transporter AM354_RS13325 3e8b44231b784be71941246718e586ef 416 Pfam PF01943 Polysaccharide biosynthesis protein 4 283 1.4E-10 T 29-03-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 AM354_RS13325 3e8b44231b784be71941246718e586ef 416 Hamap MF_02024 Lipid III flippase [wzxE]. 1 416 41.361 T 29-03-2018 IPR032896 Lipid III flippase WzxE GO:0005886|GO:0009246 AM354_RS25750 de630358d7209b0c0ae1bed687eff47d 428 Gene3D G3DSA:3.40.50.980 102 258 1.1E-5 T 29-03-2018 AM354_RS25750 de630358d7209b0c0ae1bed687eff47d 428 TIGRFAM TIGR02304 aden_form_hyp: putative adenylate-forming enzyme 3 425 1.3E-174 T 29-03-2018 IPR012685 Conserved hypothetical protein CHP02304, F390 synthetase-related AM354_RS25060 991959b7d380bafb8f07e46b5cfdedd6 120 Pfam PF16695 Type VI secretion system (T6SS), amidase immunity protein 32 107 1.7E-12 T 29-03-2018 IPR032032 Type VI secretion system (T6SS), amidase immunity protein AM354_RS05380 e18938465ae2d419cc9e7a00dfa689d1 219 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 19 213 1.0E-40 T 29-03-2018 IPR006214 Bax inhibitor 1-related AM354_RS22525 704371bc1aeb2902c57e0d4971f8d5a1 411 Pfam PF01566 Natural resistance-associated macrophage protein 39 384 1.3E-121 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 AM354_RS22525 704371bc1aeb2902c57e0d4971f8d5a1 411 PRINTS PR00447 Natural resistance-associated macrophage protein signature 98 124 1.2E-29 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 AM354_RS22525 704371bc1aeb2902c57e0d4971f8d5a1 411 PRINTS PR00447 Natural resistance-associated macrophage protein signature 201 224 1.2E-29 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 AM354_RS22525 704371bc1aeb2902c57e0d4971f8d5a1 411 PRINTS PR00447 Natural resistance-associated macrophage protein signature 300 319 1.2E-29 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 AM354_RS22525 704371bc1aeb2902c57e0d4971f8d5a1 411 PRINTS PR00447 Natural resistance-associated macrophage protein signature 126 145 1.2E-29 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 AM354_RS22525 704371bc1aeb2902c57e0d4971f8d5a1 411 PRINTS PR00447 Natural resistance-associated macrophage protein signature 151 172 1.2E-29 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 AM354_RS22525 704371bc1aeb2902c57e0d4971f8d5a1 411 TIGRFAM TIGR01197 nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 21 378 3.0E-97 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 AM354_RS22525 704371bc1aeb2902c57e0d4971f8d5a1 411 Hamap MF_00221 Divalent metal cation transporter MntH [mntH]. 3 410 37.154 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 AM354_RS19880 5edd57ffe2e2d9769c43807667b24f46 297 Pfam PF03613 PTS system mannose/fructose/sorbose family IID component 41 297 7.7E-95 T 29-03-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 AM354_RS24115 f95bb9122ebdc77b3c1e945e8794ca3c 336 Gene3D G3DSA:1.10.3470.10 3 335 3.8E-73 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS24115 f95bb9122ebdc77b3c1e945e8794ca3c 336 Pfam PF01032 FecCD transport family 18 327 4.6E-82 T 29-03-2018 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 AM354_RS24115 f95bb9122ebdc77b3c1e945e8794ca3c 336 SUPERFAMILY SSF81345 6 327 1.14E-69 T 29-03-2018 IPR029022 ABC transporter, BtuC-like AM354_RS22960 6125ec10b1589941b694f231c7b9c31d 220 Pfam PF09335 SNARE associated Golgi protein 49 177 2.0E-26 T 29-03-2018 IPR032816 SNARE associated Golgi protein AM354_RS05735 02cefff12a73739cd2d055fa4c844e6b 203 SUPERFAMILY SSF89392 22 202 1.22E-57 T 29-03-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX AM354_RS05735 02cefff12a73739cd2d055fa4c844e6b 203 Hamap MF_00240 Outer-membrane lipoprotein carrier protein [lolA]. 10 201 32.13 T 29-03-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 AM354_RS05735 02cefff12a73739cd2d055fa4c844e6b 203 TIGRFAM TIGR00547 lolA: outer membrane lipoprotein carrier protein LolA 1 203 2.2E-101 T 29-03-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 AM354_RS05735 02cefff12a73739cd2d055fa4c844e6b 203 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 33 191 6.7E-59 T 29-03-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like AM354_RS05735 02cefff12a73739cd2d055fa4c844e6b 203 Gene3D G3DSA:2.50.20.10 19 202 1.2E-40 T 29-03-2018 AM354_RS22360 2280e3782d90fcab4a964ee439fb2e6b 71 ProDom PD056452 UNCHARACTERIZED BACTERIA SIMILAR YPEB CYTOPLASMIC VCA0163 PRODUCT STM2426 GENE YPO2988 14 68 6.0E-24 T 29-03-2018 IPR024530 Putative quorum-sensing-regulated virulence factor AM354_RS22360 2280e3782d90fcab4a964ee439fb2e6b 71 Pfam PF12843 Putative quorum-sensing-regulated virulence factor 3 68 4.2E-31 T 29-03-2018 IPR024530 Putative quorum-sensing-regulated virulence factor AM354_RS10125 2149e9a4371f372d6cfb20b984fa616e 142 Pfam PF09335 SNARE associated Golgi protein 25 133 3.4E-8 T 29-03-2018 IPR032816 SNARE associated Golgi protein AM354_RS22495 3b7123bad8b1cb89774aedfc6be63cec 374 SUPERFAMILY SSF49401 243 373 3.43E-24 T 29-03-2018 IPR008966 Adhesion domain AM354_RS22495 3b7123bad8b1cb89774aedfc6be63cec 374 Gene3D G3DSA:2.60.40.1090 241 374 5.2E-30 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS22495 3b7123bad8b1cb89774aedfc6be63cec 374 Pfam PF00419 Fimbrial protein 240 373 4.9E-15 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS12450 59c72ccebdeb04272e04da6f547a0fd0 114 Pfam PF13698 Domain of unknown function (DUF4156) 23 113 6.2E-33 T 29-03-2018 IPR025294 Protein of unknown function DUF4156 AM354_RS17385 b9555603cc8841b9daa62d09d5ae1489 141 Pfam PF06853 Protein of unknown function (DUF1249) 22 135 1.5E-41 T 29-03-2018 IPR009659 Protein of unknown function DUF1249 AM354_RS09360 e0b453d21dfe96acd5497b9e28206cad 309 Pfam PF06675 Protein of unknown function (DUF1177) 40 308 3.2E-137 T 29-03-2018 IPR009561 Protein of unknown function DUF1177 AM354_RS19405 eed914530d52ec4ba2e7e076ed0493c6 243 Pfam PF04402 Protein of unknown function (DUF541) 34 235 8.9E-45 T 29-03-2018 IPR007497 Protein of unknown function DUF541 AM354_RS15930 3e76f844eb0d0d4036bdd4b477aa4c92 479 TIGRFAM TIGR00931 antiport_nhaC: Na+/H+ antiporter NhaC 11 469 1.6E-156 T 29-03-2018 IPR004770 Na+/H+ antiporter NhaC GO:0015297|GO:0016021 AM354_RS15930 3e76f844eb0d0d4036bdd4b477aa4c92 479 Pfam PF03553 Na+/H+ antiporter family 159 463 2.8E-54 T 29-03-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 AM354_RS01325 8d288f51ac2e3380f57980b41e9822cc 84 Pfam PF03891 Domain of unknown function (DUF333) 27 80 2.1E-17 T 29-03-2018 IPR005590 Protein of unknown function DUF333 AM354_RS17845 1284d651533c873a6429b3c2036f9a07 146 Pfam PF04214 Protein of unknown function, DUF 53 119 8.2E-24 T 29-03-2018 IPR007332 Protein of unknown function DUF411 AM354_RS26025 3965626f2793bd904a262bd9d3b35b63 107 Pfam PF07130 YebG protein 1 74 6.9E-35 T 29-03-2018 IPR009813 Uncharacterised protein family YebG AM354_RS26025 3965626f2793bd904a262bd9d3b35b63 107 Gene3D G3DSA:1.10.10.710 22 83 3.5E-26 T 29-03-2018 AM354_RS00670 c7e96384ba868409767d8718aad67e10 153 Gene3D G3DSA:1.20.5.400 23 139 1.9E-5 T 29-03-2018 AM354_RS00670 c7e96384ba868409767d8718aad67e10 153 Pfam PF03245 Bacteriophage Rz lysis protein 33 146 2.8E-33 T 29-03-2018 IPR004929 Spanin, inner membrane subunit GO:0019076|GO:0019835 AM354_RS22435 035998d22500ee9b133d10fd1f80bd62 351 Gene3D G3DSA:1.10.3470.10 22 349 1.5E-61 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS22435 035998d22500ee9b133d10fd1f80bd62 351 SUPERFAMILY SSF81345 24 344 7.06E-79 T 29-03-2018 IPR029022 ABC transporter, BtuC-like AM354_RS22435 035998d22500ee9b133d10fd1f80bd62 351 Pfam PF01032 FecCD transport family 35 344 1.9E-87 T 29-03-2018 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 AM354_RS06505 0d7f28a82ccd78d808b941cf46246b5c 318 Pfam PF01112 Asparaginase 4 317 4.1E-120 T 29-03-2018 IPR000246 Peptidase T2, asparaginase 2 GO:0016787 AM354_RS06505 0d7f28a82ccd78d808b941cf46246b5c 318 SUPERFAMILY SSF56235 182 309 7.21E-97 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AM354_RS06505 0d7f28a82ccd78d808b941cf46246b5c 318 SUPERFAMILY SSF56235 3 155 7.21E-97 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AM354_RS06505 0d7f28a82ccd78d808b941cf46246b5c 318 Gene3D G3DSA:3.60.20.30 185 318 2.6E-45 T 29-03-2018 AM354_RS24825 8d8d9f4daf29580fc9810d9c76f8b126 232 Pfam PF02308 MgtC family 10 129 3.3E-37 T 29-03-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 AM354_RS24825 8d8d9f4daf29580fc9810d9c76f8b126 232 PRINTS PR01837 MgtC/SapB protein signature 32 50 5.8E-45 T 29-03-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 AM354_RS24825 8d8d9f4daf29580fc9810d9c76f8b126 232 PRINTS PR01837 MgtC/SapB protein signature 84 108 5.8E-45 T 29-03-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 AM354_RS24825 8d8d9f4daf29580fc9810d9c76f8b126 232 PRINTS PR01837 MgtC/SapB protein signature 57 79 5.8E-45 T 29-03-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 AM354_RS24825 8d8d9f4daf29580fc9810d9c76f8b126 232 PRINTS PR01837 MgtC/SapB protein signature 13 32 5.8E-45 T 29-03-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 AM354_RS00310 f91af00602d7de81f0403285e4f0395b 90 Pfam PF07023 Protein of unknown function (DUF1315) 5 79 2.9E-26 T 29-03-2018 IPR009749 Protein of unknown function DUF1315 AM354_RS20300 bf67a15b6237a9d9b4a56003ef7786e8 104 Gene3D G3DSA:1.10.760.10 10 102 4.3E-23 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS20300 bf67a15b6237a9d9b4a56003ef7786e8 104 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 31 98 1.7E-8 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS20300 bf67a15b6237a9d9b4a56003ef7786e8 104 PRINTS PR00605 Class IC cytochrome C signature 77 99 2.1E-5 T 29-03-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 AM354_RS20300 bf67a15b6237a9d9b4a56003ef7786e8 104 PRINTS PR00605 Class IC cytochrome C signature 32 43 2.1E-5 T 29-03-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 AM354_RS20300 bf67a15b6237a9d9b4a56003ef7786e8 104 SUPERFAMILY SSF46626 7 103 1.72E-22 T 29-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM354_RS19875 ad487b51194344a98182230e2ce61469 259 Pfam PF03609 PTS system sorbose-specific iic component 3 233 2.9E-73 T 29-03-2018 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 AM354_RS25435 1e1aa283e6aec7d499821ce5a0684e38 234 Pfam PF02108 Flagellar assembly protein FliH 101 225 5.8E-39 T 29-03-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE AM354_RS25435 1e1aa283e6aec7d499821ce5a0684e38 234 PRINTS PR01003 Flagellar assembly protein FliH signature 121 138 3.9E-82 T 29-03-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 AM354_RS25435 1e1aa283e6aec7d499821ce5a0684e38 234 PRINTS PR01003 Flagellar assembly protein FliH signature 190 206 3.9E-82 T 29-03-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 AM354_RS25435 1e1aa283e6aec7d499821ce5a0684e38 234 PRINTS PR01003 Flagellar assembly protein FliH signature 59 81 3.9E-82 T 29-03-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 AM354_RS25435 1e1aa283e6aec7d499821ce5a0684e38 234 PRINTS PR01003 Flagellar assembly protein FliH signature 8 27 3.9E-82 T 29-03-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 AM354_RS25435 1e1aa283e6aec7d499821ce5a0684e38 234 PRINTS PR01003 Flagellar assembly protein FliH signature 162 189 3.9E-82 T 29-03-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 AM354_RS25435 1e1aa283e6aec7d499821ce5a0684e38 234 PRINTS PR01003 Flagellar assembly protein FliH signature 139 161 3.9E-82 T 29-03-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 AM354_RS25435 1e1aa283e6aec7d499821ce5a0684e38 234 PRINTS PR01003 Flagellar assembly protein FliH signature 101 120 3.9E-82 T 29-03-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 AM354_RS25435 1e1aa283e6aec7d499821ce5a0684e38 234 PRINTS PR01003 Flagellar assembly protein FliH signature 82 100 3.9E-82 T 29-03-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 AM354_RS25435 1e1aa283e6aec7d499821ce5a0684e38 234 PRINTS PR01003 Flagellar assembly protein FliH signature 207 232 3.9E-82 T 29-03-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 AM354_RS11095 985df7aa4d8682679f212190af2eb2ec 204 Pfam PF04972 BON domain 57 124 8.3E-20 T 29-03-2018 IPR007055 BON domain AM354_RS11095 985df7aa4d8682679f212190af2eb2ec 204 Pfam PF04972 BON domain 137 204 2.5E-19 T 29-03-2018 IPR007055 BON domain AM354_RS11095 985df7aa4d8682679f212190af2eb2ec 204 SMART SM00749 141 204 6.1E-11 T 29-03-2018 IPR014004 Transport-associated and nodulation domain, bacteria AM354_RS11095 985df7aa4d8682679f212190af2eb2ec 204 SMART SM00749 62 125 1.9E-10 T 29-03-2018 IPR014004 Transport-associated and nodulation domain, bacteria AM354_RS22170 39d56e387cb71fb8e0ca1954a9645203 197 Pfam PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading 28 193 1.2E-38 T 29-03-2018 IPR004302 Cellulose/chitin-binding protein, N-terminal AM354_RS22170 39d56e387cb71fb8e0ca1954a9645203 197 Gene3D G3DSA:2.70.50.50 28 196 5.2E-57 T 29-03-2018 AM354_RS22170 39d56e387cb71fb8e0ca1954a9645203 197 SUPERFAMILY SSF81296 28 196 6.44E-66 T 29-03-2018 IPR014756 Immunoglobulin E-set AM354_RS13625 cd0357059da75b5d8f80243223d4182f 91 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 3 90 2.6E-17 T 29-03-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family AM354_RS13625 cd0357059da75b5d8f80243223d4182f 91 Gene3D G3DSA:3.30.2310.20 1 90 5.9E-7 T 29-03-2018 AM354_RS13625 cd0357059da75b5d8f80243223d4182f 91 SUPERFAMILY SSF143011 1 88 3.57E-6 T 29-03-2018 IPR035095 Toxin RelE-like domain AM354_RS13130 60ed7d8cac91fee31d0cc8ba9392d6fb 144 Gene3D G3DSA:3.40.630.30 1 139 7.1E-16 T 29-03-2018 AM354_RS13130 60ed7d8cac91fee31d0cc8ba9392d6fb 144 SUPERFAMILY SSF55729 5 128 8.75E-18 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS13130 60ed7d8cac91fee31d0cc8ba9392d6fb 144 Pfam PF13480 Acetyltransferase (GNAT) domain 32 102 7.2E-9 T 29-03-2018 AM354_RS03845 c130ddc18ef25b789efff48b879b8365 139 Pfam PF00583 Acetyltransferase (GNAT) family 31 116 6.8E-10 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS03845 c130ddc18ef25b789efff48b879b8365 139 Gene3D G3DSA:3.40.630.30 1 137 1.6E-23 T 29-03-2018 AM354_RS03845 c130ddc18ef25b789efff48b879b8365 139 SUPERFAMILY SSF55729 2 123 1.92E-22 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS20500 38b46017da8d76377e584a6fe798d5e2 67 Pfam PF06945 Protein of unknown function (DUF1289) 14 60 3.9E-18 T 29-03-2018 IPR010710 Protein of unknown function DUF1289 AM354_RS18770 d31ed69c6af55580393384938fb14fad 592 Pfam PF03235 Protein of unknown function DUF262 27 165 1.4E-14 T 29-03-2018 IPR004919 Domain of unknown function DUF262 AM354_RS25865 9a47d9a322e6c5fa030d42076375ed96 117 Pfam PF06993 Protein of unknown function (DUF1304) 11 113 3.0E-39 T 29-03-2018 IPR009732 Protein of unknown function DUF1304 AM354_RS12305 2eb79b9576f6272ec6b1238ed370737d 66 Pfam PF09838 Uncharacterized protein conserved in bacteria (DUF2065) 5 60 3.8E-22 T 29-03-2018 IPR019201 Protein of unknown function DUF2065 AM354_RS04070 3cf84bf3eaaf157ad13db87601bf6d9c 60 Pfam PF13973 Domain of unknown function (DUF4222) 6 59 1.9E-19 T 29-03-2018 IPR025317 Protein of unknown function DUF4222 AM354_RS07895 ec5b61539e285f79672759a35b29bf7f 241 Pfam PF04973 Nicotinamide mononucleotide transporter 23 227 1.8E-53 T 29-03-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 AM354_RS07895 ec5b61539e285f79672759a35b29bf7f 241 TIGRFAM TIGR01528 NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC 22 229 8.6E-65 T 29-03-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 AM354_RS18130 47a9b84ed31ed5e54d416debc7d65faf 294 Pfam PF14305 TupA-like ATPgrasp 44 288 5.3E-44 T 29-03-2018 IPR029465 TupA-like ATPgrasp protein AM354_RS14270 090e380388cc23d566ce4dca1b205778 205 Pfam PF03458 UPF0126 domain 5 78 3.3E-19 T 29-03-2018 IPR005115 Uncharacterised domain UPF0126 AM354_RS14270 090e380388cc23d566ce4dca1b205778 205 Pfam PF03458 UPF0126 domain 91 164 3.7E-21 T 29-03-2018 IPR005115 Uncharacterised domain UPF0126 AM354_RS11915 f1de653f277c26c3f4ade63598382fc1 292 Pfam PF01136 Peptidase family U32 94 237 1.2E-12 T 29-03-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 AM354_RS06700 25fe1295d170d6e0f38f208e679cb14b 222 Gene3D G3DSA:2.60.40.10 21 146 1.4E-12 T 29-03-2018 IPR013783 Immunoglobulin-like fold AM354_RS08910 e6140559de62f627f0d902113c7c6f6c 120 Pfam PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) 16 116 2.7E-21 T 29-03-2018 IPR019114 Chaperone lipoprotein, PulS/OutS-like AM354_RS19970 b1cc2ee11a4c6b04b7a1df413bf0cfa1 238 Pfam PF03741 Integral membrane protein TerC family 16 202 1.2E-53 T 29-03-2018 IPR005496 Integral membrane protein TerC GO:0016021 AM354_RS22865 7d3545c91597fe688471e8052941d042 342 PIRSF PIRSF020588 1 341 4.5E-145 T 29-03-2018 IPR023597 Flagellar regulator Flk GO:0010468|GO:0031224 AM354_RS18235 51c2512f87a03b37881cedea85c63e85 412 Pfam PF13730 Helix-turn-helix domain 54 114 5.1E-11 T 29-03-2018 AM354_RS25760 551a91a2937eeb6f72db24d7ce8bafb7 377 Pfam PF04116 Fatty acid hydroxylase superfamily 78 211 1.1E-26 T 29-03-2018 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0008610|GO:0016491|GO:0055114 AM354_RS21775 019b34c8eca2a0a19c1cd64694318584 349 SMART SM01133 68 325 9.6E-39 T 29-03-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AM354_RS21775 019b34c8eca2a0a19c1cd64694318584 349 Gene3D G3DSA:3.20.20.70 51 347 1.4E-67 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM354_RS21775 019b34c8eca2a0a19c1cd64694318584 349 SUPERFAMILY SSF51569 270 343 1.34E-64 T 29-03-2018 AM354_RS21775 019b34c8eca2a0a19c1cd64694318584 349 SUPERFAMILY SSF51569 56 242 1.34E-64 T 29-03-2018 AM354_RS21775 019b34c8eca2a0a19c1cd64694318584 349 Pfam PF01791 DeoC/LacD family aldolase 69 325 4.1E-73 T 29-03-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AM354_RS03545 c6dba9ab02e67e6d87a5ad5d7597f1c8 267 Gene3D G3DSA:1.10.3720.10 9 267 1.2E-38 T 29-03-2018 AM354_RS03545 c6dba9ab02e67e6d87a5ad5d7597f1c8 267 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 80 266 3.7E-16 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS03545 c6dba9ab02e67e6d87a5ad5d7597f1c8 267 SUPERFAMILY SSF161098 18 255 1.31E-44 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM354_RS14155 38b0cba7a4460d0072e754e2f2c97be8 298 Gene3D G3DSA:3.40.1130.10 42 229 9.9E-18 T 29-03-2018 AM354_RS14155 38b0cba7a4460d0072e754e2f2c97be8 298 SMART SM00563 88 230 2.0E-15 T 29-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AM354_RS14155 38b0cba7a4460d0072e754e2f2c97be8 298 Pfam PF01553 Acyltransferase 76 210 9.6E-12 T 29-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AM354_RS14155 38b0cba7a4460d0072e754e2f2c97be8 298 SUPERFAMILY SSF69593 11 287 1.14E-26 T 29-03-2018 AM354_RS15765 9ed1776205b33efac70a29fbf8e9b523 522 Pfam PF09992 Phosphodiester glycosidase 410 517 2.5E-7 T 29-03-2018 IPR018711 Phosphodiester glycosidase AM354_RS15070 2944c0f8442403e5be7073585b8ee5f6 71 Pfam PF10948 Protein of unknown function (DUF2635) 6 46 1.3E-12 T 29-03-2018 IPR024400 Protein of unknown function DUF2635 AM354_RS20085 80a2a5ddb2f4e7a283082a3b4e7adfa8 74 SUPERFAMILY SSF50182 21 71 4.69E-20 T 29-03-2018 IPR010920 LSM domain AM354_RS20085 80a2a5ddb2f4e7a283082a3b4e7adfa8 74 Pfam PF06004 Bacterial protein of unknown function (DUF903) 23 71 3.1E-26 T 29-03-2018 IPR010305 Protein of unknown function DUF903 AM354_RS20085 80a2a5ddb2f4e7a283082a3b4e7adfa8 74 Gene3D G3DSA:2.30.30.100 21 71 1.6E-31 T 29-03-2018 AM354_RS23125 83a86e1db3a5a02f61cf23d24ad2763d 145 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 7 124 20.178 T 29-03-2018 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 AM354_RS23125 83a86e1db3a5a02f61cf23d24ad2763d 145 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 27 123 1.1E-31 T 29-03-2018 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM354_RS24820 6711b07af6dd3a5b0f386956c37ae0aa 727 Gene3D G3DSA:3.40.50.2300 355 428 0.0013 T 29-03-2018 AM354_RS24820 6711b07af6dd3a5b0f386956c37ae0aa 727 Pfam PF11308 Glycosyl hydrolases related to GH101 family, GH129 366 689 8.3E-152 T 29-03-2018 IPR021459 Glycosyl hydrolases related to GH101 family, GHL1-GHL3 AM354_RS12250 3815d13bd6979e80fede31c56d8a45ef 88 Gene3D G3DSA:3.30.1660.10 20 88 3.6E-22 T 29-03-2018 IPR025543 Dodecin-like AM354_RS12250 3815d13bd6979e80fede31c56d8a45ef 88 Pfam PF07338 Protein of unknown function (DUF1471) 33 88 8.1E-19 T 29-03-2018 IPR010854 Domain of unknown function DUF1471 AM354_RS12250 3815d13bd6979e80fede31c56d8a45ef 88 SUPERFAMILY SSF159871 2 88 2.88E-23 T 29-03-2018 IPR010854 Domain of unknown function DUF1471 AM354_RS26035 d06d6604aba011835fcab0ed72552e36 119 Pfam PF13995 YebF-like protein 28 116 5.8E-38 T 29-03-2018 IPR025603 YebF/Colicin-M immunity protein AM354_RS26035 d06d6604aba011835fcab0ed72552e36 119 ProDom PD077599 YEBF LIPOPROTEIN EXPORTED PERIPLASMIC PRECURSOR SIGNAL SIMILAR PALMITATE MEMBRANE ESCHERICHIA 26 115 9.0E-26 T 29-03-2018 IPR025603 YebF/Colicin-M immunity protein AM354_RS15430 d28ca54358db7e27ddec6c95abe0ade7 387 SUPERFAMILY SSF51419 34 269 2.45E-25 T 29-03-2018 IPR029066 PLP-binding barrel AM354_RS15430 d28ca54358db7e27ddec6c95abe0ade7 387 Gene3D G3DSA:3.20.20.10 35 259 1.1E-29 T 29-03-2018 IPR029066 PLP-binding barrel AM354_RS15430 d28ca54358db7e27ddec6c95abe0ade7 387 Pfam PF01168 Alanine racemase, N-terminal domain 33 263 2.9E-20 T 29-03-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM354_RS19015 5d5817d45c70a4d2dce2f9c1214dad35 426 Pfam PF01522 Polysaccharide deacetylase 241 379 2.8E-20 T 29-03-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 AM354_RS19015 5d5817d45c70a4d2dce2f9c1214dad35 426 SUPERFAMILY SSF88713 204 402 2.28E-30 T 29-03-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AM354_RS19015 5d5817d45c70a4d2dce2f9c1214dad35 426 Gene3D G3DSA:2.40.50.110 95 174 4.8E-5 T 29-03-2018 AM354_RS19015 5d5817d45c70a4d2dce2f9c1214dad35 426 Gene3D G3DSA:3.20.20.370 183 424 3.0E-39 T 29-03-2018 AM354_RS11810 9cf86ee265f94b095e98b1d1be165c4d 353 Pfam PF03773 Predicted permease 79 346 1.9E-26 T 29-03-2018 IPR005524 Predicted permease DUF318 AM354_RS03905 5e85c36fe44d463fc4954683648e2d5c 99 Pfam PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 10 85 6.1E-12 T 29-03-2018 IPR019289 Bacteriophage tail protein Gp41, putative AM354_RS07275 8734857b3522462512b565d33796bea5 223 SUPERFAMILY SSF52964 44 144 1.57E-9 T 29-03-2018 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 AM354_RS07275 8734857b3522462512b565d33796bea5 223 Pfam PF03783 Curli production assembly/transport component CsgG 43 221 8.5E-33 T 29-03-2018 IPR005534 Curli production assembly/transport component CsgG GO:0030288 AM354_RS07275 8734857b3522462512b565d33796bea5 223 Gene3D G3DSA:3.40.50.10070 38 182 2.0E-20 T 29-03-2018 AM354_RS23685 d2a785ff9e1471ac404b5554cb5f2624 360 Pfam PF01032 FecCD transport family 42 355 5.9E-85 T 29-03-2018 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 AM354_RS23685 d2a785ff9e1471ac404b5554cb5f2624 360 Gene3D G3DSA:1.10.3470.10 26 360 3.2E-70 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS23685 d2a785ff9e1471ac404b5554cb5f2624 360 SUPERFAMILY SSF81345 24 355 4.45E-79 T 29-03-2018 IPR029022 ABC transporter, BtuC-like AM354_RS18820 8084db175a9f5c2c90cc23c12a3a0336 108 Pfam PF04320 Protein with unknown function (DUF469) 7 107 9.5E-44 T 29-03-2018 IPR007416 Protein of unknown function DUF469 AM354_RS24720 aae0254f6407eb48a59c85e69d5e6cb4 297 Pfam PF11004 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase 24 296 2.0E-111 T 29-03-2018 IPR021266 Kdo hydroxylase AM354_RS18530 cf0814209b547b371a6bdf6e478e5ea6 81 Pfam PF11431 Membrane transport protein MerF 24 67 6.0E-26 T 29-03-2018 IPR021091 Mercury ion transport, MerF AM354_RS18530 cf0814209b547b371a6bdf6e478e5ea6 81 Gene3D G3DSA:1.10.287.910 24 67 7.8E-25 T 29-03-2018 AM354_RS08995 b10d345ae302d545e348f86771768c0c 104 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 7 82 2.9E-15 T 29-03-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 AM354_RS08995 b10d345ae302d545e348f86771768c0c 104 Gene3D G3DSA:1.10.10.10 4 104 2.9E-31 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS08995 b10d345ae302d545e348f86771768c0c 104 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 8 87 7.3E-27 T 29-03-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 AM354_RS08995 b10d345ae302d545e348f86771768c0c 104 SUPERFAMILY SSF46767 7 88 1.31E-25 T 29-03-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 AM354_RS03975 2f5d217b0c2b2a66a1ba118668bf4e62 110 Pfam PF02924 Bacteriophage lambda head decoration protein D 17 105 4.9E-9 T 29-03-2018 IPR004195 Head decoration protein D GO:0019028 AM354_RS03975 2f5d217b0c2b2a66a1ba118668bf4e62 110 ProDom PD020518 CAPSID HEAD PROPHAGE DECORATION SUBUNIT SMALL 3D-STRUCTURE MAJOR GIFSY-1 STRUCTURAL 27 109 5.0E-20 T 29-03-2018 IPR004195 Head decoration protein D GO:0019028 AM354_RS03975 2f5d217b0c2b2a66a1ba118668bf4e62 110 Gene3D G3DSA:2.40.300.10 1 110 6.6E-13 T 29-03-2018 AM354_RS03975 2f5d217b0c2b2a66a1ba118668bf4e62 110 SUPERFAMILY SSF51274 10 109 2.09E-36 T 29-03-2018 IPR004195 Head decoration protein D GO:0019028 AM354_RS17690 43a80ef874862c2c10f3f102eb0cb244 317 Pfam PF16220 Domain of unknown function (DUF4880) 15 56 5.3E-9 T 29-03-2018 IPR032623 FecR, N-terminal AM354_RS17690 43a80ef874862c2c10f3f102eb0cb244 317 Pfam PF04773 FecR protein 110 202 3.4E-16 T 29-03-2018 IPR006860 FecR protein AM354_RS17690 43a80ef874862c2c10f3f102eb0cb244 317 PIRSF PIRSF018266 3 317 2.1E-89 T 29-03-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component AM354_RS17690 43a80ef874862c2c10f3f102eb0cb244 317 Pfam PF16344 Domain of unknown function (DUF4974) 219 305 1.4E-8 T 29-03-2018 IPR032508 Protein FecR, C-terminal AM354_RS23425 790b764994570801242e9591e03ca9c7 112 Pfam PF05939 Phage minor tail protein 4 110 6.8E-35 T 29-03-2018 IPR010265 Bacteriophage lambda, GpM, minor tail AM354_RS00605 4ee9277cdb45a4eaa30dac74b9bf4692 437 Pfam PF10926 Protein of unknown function (DUF2800) 5 414 5.7E-112 T 29-03-2018 IPR021229 Protein of unknown function DUF2800 AM354_RS03595 16e5ced7f079a2b5f597fb43b7cb1f25 179 Pfam PF05229 Spore Coat Protein U domain 28 176 1.8E-36 T 29-03-2018 IPR007893 Spore coat protein U AM354_RS03595 16e5ced7f079a2b5f597fb43b7cb1f25 179 SMART SM00972 119 176 2.1E-22 T 29-03-2018 IPR007893 Spore coat protein U AM354_RS19590 5e6b592126aced20d815c77996c05886 165 Pfam PF09933 Predicted small integral membrane protein (DUF2165) 4 159 9.7E-68 T 29-03-2018 IPR018681 Protein of unknown function DUF2165, transmembrane AM354_RS25295 a78145f0d8ad00e21392e8e9a02f8787 124 PIRSF PIRSF018634 2 124 4.8E-34 T 29-03-2018 IPR009387 Toxin HigB-2 AM354_RS25295 a78145f0d8ad00e21392e8e9a02f8787 124 Pfam PF06296 RelE toxin of RelE / RelB toxin-antitoxin system 4 119 7.7E-38 T 29-03-2018 IPR009387 Toxin HigB-2 AM354_RS08330 9b6c6d7d3c8532c178e1f313cd250209 160 Pfam PF07295 Zinc-ribbon containing domain 14 157 1.9E-55 T 29-03-2018 IPR009912 Zinc-ribbon containing domain AM354_RS05270 39ec45b98084920637374a9ef51d95f6 466 ProSitePatterns PS00218 Amino acid permeases signature. 52 82 - T 29-03-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 AM354_RS05270 39ec45b98084920637374a9ef51d95f6 466 PIRSF PIRSF006060 2 465 1.6E-69 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM354_RS05270 39ec45b98084920637374a9ef51d95f6 466 Pfam PF00324 Amino acid permease 27 464 2.6E-118 T 29-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 AM354_RS19600 c00b7c5dd3198e17e059ec40907510b4 88 Gene3D G3DSA:1.10.150.250 1 85 7.9E-26 T 29-03-2018 AM354_RS19600 c00b7c5dd3198e17e059ec40907510b4 88 Pfam PF03937 Flavinator of succinate dehydrogenase 6 76 8.7E-25 T 29-03-2018 IPR005631 Flavinator of succinate dehydrogenase AM354_RS19600 c00b7c5dd3198e17e059ec40907510b4 88 SUPERFAMILY SSF109910 1 78 8.5E-27 T 29-03-2018 IPR005631 Flavinator of succinate dehydrogenase AM354_RS02885 c3c6f1f4f6b73436b333933938d1a7be 146 Pfam PF10754 Protein of unknown function (DUF2569) 6 144 6.9E-44 T 29-03-2018 IPR019690 Protein of unknown function DUF2569 AM354_RS17795 4529e31864592a3253def70c20de6eb2 307 Pfam PF13737 Transposase DDE domain 19 130 1.7E-44 T 29-03-2018 IPR025668 Transposase DDE domain AM354_RS17830 75f33e30b71e00585d7c61a0a1179f83 117 Pfam PF11604 Copper binding periplasmic protein CusF 47 105 8.4E-20 T 29-03-2018 IPR021647 Copper binding periplasmic protein CusF AM354_RS18110 84ec7a526a898c98e680a039e1250aaa 433 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 12 396 1.2E-22 T 29-03-2018 IPR001248 Purine-cytosine permease GO:0005215|GO:0016020|GO:0055085 AM354_RS15290 d96c8da9418601f6aeee9aa2ad58d5e5 314 Gene3D G3DSA:2.60.40.1090 184 314 3.0E-5 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS19520 d021feecee21ea0ffd400c5faf8d1c81 237 Pfam PF11010 Protein of unknown function (DUF2848) 26 228 8.5E-83 T 29-03-2018 IPR021269 Protein of unknown function DUF2848 AM354_RS22680 b244a59d479a93566313393ac23d83fd 323 Gene3D G3DSA:3.40.50.300 65 293 0.0011 T 29-03-2018 AM354_RS17910 80146e1e5a68c5f36a364b37919e33a7 116 Pfam PF05717 IS66 Orf2 like protein 9 106 1.1E-35 T 29-03-2018 IPR008878 Transposase IS66, Orf2 AM354_RS22755 441db85cf43c97817cedf1e2d098f768 252 Pfam PF04333 MlaA lipoprotein 30 223 3.0E-65 T 29-03-2018 IPR007428 MlaA lipoprotein GO:0016020 AM354_RS22755 441db85cf43c97817cedf1e2d098f768 252 PRINTS PR01805 VacJ lipoprotein signature 139 156 1.0E-32 T 29-03-2018 IPR007428 MlaA lipoprotein GO:0016020 AM354_RS22755 441db85cf43c97817cedf1e2d098f768 252 PRINTS PR01805 VacJ lipoprotein signature 31 44 1.0E-32 T 29-03-2018 IPR007428 MlaA lipoprotein GO:0016020 AM354_RS22755 441db85cf43c97817cedf1e2d098f768 252 PRINTS PR01805 VacJ lipoprotein signature 100 117 1.0E-32 T 29-03-2018 IPR007428 MlaA lipoprotein GO:0016020 AM354_RS22755 441db85cf43c97817cedf1e2d098f768 252 PRINTS PR01805 VacJ lipoprotein signature 49 65 1.0E-32 T 29-03-2018 IPR007428 MlaA lipoprotein GO:0016020 AM354_RS23385 db6146a940b980f0d8b4a4bf09f65197 106 Pfam PF16083 LydA holin phage, holin superfamily III 15 91 1.2E-12 T 29-03-2018 IPR032126 LydA-like holin AM354_RS20885 986d87742171692ebb6afe40bd212d91 182 Pfam PF02413 Caudovirales tail fibre assembly protein, lambda gpK 39 180 1.6E-39 T 29-03-2018 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly AM354_RS12690 bfdb553b3caa03a62994196ea92bccf3 249 Pfam PF00899 ThiF family 10 242 3.9E-60 T 29-03-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 AM354_RS12690 bfdb553b3caa03a62994196ea92bccf3 249 Gene3D G3DSA:3.40.50.720 1 247 2.7E-66 T 29-03-2018 AM354_RS12690 bfdb553b3caa03a62994196ea92bccf3 249 SUPERFAMILY SSF69572 2 246 9.68E-77 T 29-03-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 AM354_RS08720 9df3261532864bcc7194479dbb97c555 311 Pfam PF11583 P-aminobenzoate N-oxygenase AurF 4 239 4.7E-22 T 29-03-2018 IPR025859 P-aminobenzoate N-oxygenase AurF AM354_RS08720 9df3261532864bcc7194479dbb97c555 311 Gene3D G3DSA:1.10.620.20 54 269 2.3E-4 T 29-03-2018 AM354_RS19050 f1fe3fb2f1a468e979e140499fb5bff1 109 ProDom PD277113 MEMBRANE INNER YIDG TRANSMEMBRANE STY3975 RV2273/MT2334 MB2296 8 36 9.0E-5 T 29-03-2018 IPR020264 Uncharacterised protein family YidG AM354_RS19050 f1fe3fb2f1a468e979e140499fb5bff1 109 Pfam PF02656 Domain of unknown function (DUF202) 11 69 6.2E-11 T 29-03-2018 IPR003807 Domain of unknown function DUF202 AM354_RS18375 d61fb9565a909c08645811ab9f90bf86 316 TIGRFAM TIGR03749 conj_TIGR03749: integrating conjugative element protein, PFL_4704 family 22 293 6.9E-100 T 29-03-2018 IPR021844 Integrating conjugative element protein, PFL4704 AM354_RS18375 d61fb9565a909c08645811ab9f90bf86 316 Pfam PF11920 Protein of unknown function (DUF3438) 18 302 1.5E-116 T 29-03-2018 IPR021844 Integrating conjugative element protein, PFL4704 AM354_RS04035 1ecb64f8ee0a2af62014824b267dd7a6 119 Pfam PF06530 Phage antitermination protein Q 2 118 1.6E-40 T 29-03-2018 IPR010534 Bacteriophage 933W, GpQ GO:0003677|GO:0060567 AM354_RS04035 1ecb64f8ee0a2af62014824b267dd7a6 119 Gene3D G3DSA:1.10.10.10 51 103 4.4E-5 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS24745 59b9fe24e443f8f254216220475bc60c 65 Pfam PF05957 Bacterial protein of unknown function (DUF883) 14 65 3.4E-10 T 29-03-2018 IPR010279 Protein of unknown function DUF883, ElaB AM354_RS15135 208f5f4436a2a8021dea2efc4c7b1b17 100 Pfam PF10805 Protein of unknown function (DUF2730) 4 98 1.5E-32 T 29-03-2018 IPR020269 Bacteriophage Mu, Gp25 AM354_RS15135 208f5f4436a2a8021dea2efc4c7b1b17 100 ProDom PD283729 GP25 PHAGE SO2675 MEMBRANE MU-LIKE TRANSMEMBRANE HI1498 ECS4966 30 95 6.0E-25 T 29-03-2018 IPR020269 Bacteriophage Mu, Gp25 AM354_RS19305 efab801adab0e8dffab140f487667eac 222 Pfam PF07077 Protein of unknown function (DUF1345) 39 212 4.4E-56 T 29-03-2018 IPR009781 Protein of unknown function DUF1345 AM354_RS02455 e68ac47427db92ae28885210cc335cbe 144 SUPERFAMILY SSF54593 20 137 1.83E-12 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS02455 e68ac47427db92ae28885210cc335cbe 144 Gene3D G3DSA:3.10.180.10 14 141 5.5E-11 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS01240 6ca68bff924af221309a606f9ca035e5 88 Pfam PF09584 Phage shock protein PspD (Phageshock_PspD) 19 78 9.7E-28 T 29-03-2018 IPR014321 Phage shock protein, PspD AM354_RS03295 5e1fd60552941ce7f7f0a164bad6b7ce 334 Gene3D G3DSA:1.10.3470.10 3 333 4.3E-77 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS03295 5e1fd60552941ce7f7f0a164bad6b7ce 334 Pfam PF01032 FecCD transport family 17 327 2.8E-95 T 29-03-2018 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 AM354_RS03295 5e1fd60552941ce7f7f0a164bad6b7ce 334 SUPERFAMILY SSF81345 5 327 7.45E-88 T 29-03-2018 IPR029022 ABC transporter, BtuC-like AM354_RS18120 04c8b4eb742ce19877cef054a9b1157f 136 Pfam PF00583 Acetyltransferase (GNAT) family 31 114 9.8E-14 T 29-03-2018 IPR000182 GNAT domain GO:0008080 AM354_RS18120 04c8b4eb742ce19877cef054a9b1157f 136 Gene3D G3DSA:3.40.630.30 4 136 1.4E-21 T 29-03-2018 AM354_RS18120 04c8b4eb742ce19877cef054a9b1157f 136 SUPERFAMILY SSF55729 33 136 1.64E-26 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS20010 f144bbef19a410d17f8da864d4919890 148 Pfam PF10713 Protein of unknown function (DUF2509) 17 146 1.1E-37 T 29-03-2018 IPR019652 Protein of unknown function DUF2509 AM354_RS07990 7afde437731b3cbbf22d44a69575366c 379 PIRSF PIRSF000267 2 378 2.5E-129 T 29-03-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 AM354_RS07990 7afde437731b3cbbf22d44a69575366c 379 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 7 362 1.6E-108 T 29-03-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 AM354_RS07990 7afde437731b3cbbf22d44a69575366c 379 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 1 379 2.7E-189 T 29-03-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 AM354_RS23660 b047ac3f44c8a1dc20e19bfeb55efbcb 357 TIGRFAM TIGR00698 TIGR00698: conserved hypothetical protein 23 355 6.9E-130 T 29-03-2018 IPR004630 Uncharacterised protein family UPF0324, bacteria GO:0016021 AM354_RS23660 b047ac3f44c8a1dc20e19bfeb55efbcb 357 Pfam PF03601 Conserved hypothetical protein 698 24 335 1.4E-107 T 29-03-2018 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 AM354_RS11385 7acd784b8ec202fa57f0522e79ad21b4 216 Pfam PF01618 MotA/TolQ/ExbB proton channel family 74 183 9.8E-26 T 29-03-2018 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 AM354_RS08835 6cf142a7c2cc0056ec56e3d14521cdd6 59 Pfam PF10689 Protein of unknown function (DUF2496) 2 44 3.8E-24 T 29-03-2018 IPR019630 Protein of unknown function DUF2496, YbaM-related AM354_RS22905 4e63fd6a5233be5951ef1fefab085100 505 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 440 2.3E-144 T 29-03-2018 IPR002823 Protein of unknown function DUF112, transmembrane AM354_RS03045 ef971fcda9736aa9504057714ca2479b 676 Pfam PF04632 Fusaric acid resistance protein family 20 663 2.5E-196 T 29-03-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0006810 AM354_RS25085 69c13537eaa6a55cd1f122e8f3c9abd3 163 Pfam PF14113 Type VI secretion system (T6SS), amidase effector protein 4 46 160 2.9E-20 T 29-03-2018 IPR025562 Type VI secretion system (T6SS), amidase effector protein 4 AM354_RS18060 4074087afebcd022dc2dfcc6bc44b9a1 508 Pfam PF03806 AbgT putative transporter family 15 505 5.4E-188 T 29-03-2018 IPR004697 p-Aminobenzoyl-glutamate transport protein AbgT GO:0015558|GO:1902604 AM354_RS19885 47847c69694e174d1a81a9dd71583fd2 144 SUPERFAMILY SSF53062 1 126 6.02E-33 T 29-03-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 AM354_RS19885 47847c69694e174d1a81a9dd71583fd2 144 Pfam PF03610 PTS system fructose IIA component 3 114 3.6E-27 T 29-03-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 AM354_RS19885 47847c69694e174d1a81a9dd71583fd2 144 Gene3D G3DSA:3.40.50.510 1 139 2.2E-34 T 29-03-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 AM354_RS15330 19d1c3dd00757f0f480e310ece6ff20f 257 TIGRFAM TIGR00245 TIGR00245: TIGR00245 family protein 6 251 9.4E-107 T 29-03-2018 IPR005226 UPF0014 family AM354_RS15330 19d1c3dd00757f0f480e310ece6ff20f 257 Pfam PF03649 Uncharacterised protein family (UPF0014) 10 245 1.4E-82 T 29-03-2018 IPR005226 UPF0014 family AM354_RS14795 73594448533440b4919a86856d316566 233 PIRSF PIRSF028451 4 227 6.7E-29 T 29-03-2018 IPR015996 Uncharacterised conserved protein UCP028451 AM354_RS14795 73594448533440b4919a86856d316566 233 Pfam PF09365 Conserved hypothetical protein (DUF2461) 13 218 3.2E-46 T 29-03-2018 IPR012808 Conserved hypothetical protein CHP02453 AM354_RS14795 73594448533440b4919a86856d316566 233 TIGRFAM TIGR02453 TIGR02453: TIGR02453 family protein 9 222 3.1E-31 T 29-03-2018 IPR012808 Conserved hypothetical protein CHP02453 AM354_RS02850 3c8b22d43642a63895598b48d43a05ee 122 Gene3D G3DSA:3.40.50.10400 1 120 3.0E-18 T 29-03-2018 IPR027269 Hypothetical PA1492 domain AM354_RS20675 3473c910233d2bbddbd988aa794d431c 217 Pfam PF11769 Protein of unknown function (DUF3313) 14 211 1.6E-50 T 29-03-2018 IPR021747 Protein of unknown function DUF3313 AM354_RS23705 d657c74c4fd26a03826bade1fca30867 331 Gene3D G3DSA:1.10.3470.10 43 329 5.1E-31 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS23705 d657c74c4fd26a03826bade1fca30867 331 Pfam PF02653 Branched-chain amino acid transport system / permease component 49 323 1.1E-38 T 29-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AM354_RS12275 ba7c8b0e209b486bdb3fd65f4961cad5 132 Pfam PF03994 Domain of Unknown Function (DUF350) 78 130 6.2E-11 T 29-03-2018 IPR007140 Protein of unknown function DUF350 AM354_RS12275 ba7c8b0e209b486bdb3fd65f4961cad5 132 Pfam PF03994 Domain of Unknown Function (DUF350) 13 65 7.2E-11 T 29-03-2018 IPR007140 Protein of unknown function DUF350 AM354_RS05910 495f1fded4b41e5160a13fadb07859eb 159 Pfam PF10767 Protein of unknown function (DUF2593) 17 156 2.9E-64 T 29-03-2018 IPR019703 Protein of unknown function DUF2593 AM354_RS13820 8d4097ea676a6577722a339aab5c23cc 137 SUPERFAMILY SSF49764 31 137 3.84E-20 T 29-03-2018 IPR008978 HSP20-like chaperone AM354_RS13820 8d4097ea676a6577722a339aab5c23cc 137 Gene3D G3DSA:2.60.40.790 5 137 5.9E-20 T 29-03-2018 IPR008978 HSP20-like chaperone AM354_RS13820 8d4097ea676a6577722a339aab5c23cc 137 Pfam PF00011 Hsp20/alpha crystallin family 42 137 1.3E-20 T 29-03-2018 IPR002068 Alpha crystallin/Hsp20 domain AM354_RS19620 2285fc89f17bef3a6b70f9f85950c74d 454 Pfam PF06123 Inner membrane protein CreD 6 429 2.7E-152 T 29-03-2018 IPR010364 Uncharacterised protein family, inner membrane CreD AM354_RS19620 2285fc89f17bef3a6b70f9f85950c74d 454 PIRSF PIRSF004548 1 449 1.1E-169 T 29-03-2018 IPR010364 Uncharacterised protein family, inner membrane CreD AM354_RS24310 67f562ca635b200dca423b2ed58942af 146 Pfam PF04657 Putative inner membrane exporter, YdcZ 3 140 4.4E-19 T 29-03-2018 IPR006750 Putative inner membrane exporter, YdcZ AM354_RS12485 4102737f02b580ab14ac542f120e6127 107 Gene3D G3DSA:3.30.70.120 1 107 3.7E-34 T 29-03-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal AM354_RS12485 4102737f02b580ab14ac542f120e6127 107 SUPERFAMILY SSF54913 5 106 2.48E-33 T 29-03-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta AM354_RS12485 4102737f02b580ab14ac542f120e6127 107 Hamap MF_01160 Divalent-cation tolerance protein CutA [cutA]. 1 107 36.064 T 29-03-2018 IPR023700 Divalent cation tolerance protein CutA, Enterobacteria GO:0005507|GO:0005737 AM354_RS12485 4102737f02b580ab14ac542f120e6127 107 Pfam PF03091 CutA1 divalent ion tolerance protein 7 104 9.1E-32 T 29-03-2018 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 AM354_RS18685 36aa6b6c208e831b10d0f636539c6617 217 Gene3D G3DSA:2.60.40.1180 116 217 5.0E-20 T 29-03-2018 AM354_RS18685 36aa6b6c208e831b10d0f636539c6617 217 Gene3D G3DSA:2.60.40.1180 30 115 2.8E-17 T 29-03-2018 AM354_RS18685 36aa6b6c208e831b10d0f636539c6617 217 SUPERFAMILY SSF81901 53 203 1.83E-23 T 29-03-2018 AM354_RS18685 36aa6b6c208e831b10d0f636539c6617 217 SMART SM00671 101 144 1.6E-5 T 29-03-2018 IPR006597 Sel1-like repeat AM354_RS18685 36aa6b6c208e831b10d0f636539c6617 217 SMART SM00671 65 100 1.3E-7 T 29-03-2018 IPR006597 Sel1-like repeat AM354_RS18685 36aa6b6c208e831b10d0f636539c6617 217 SMART SM00671 145 181 2.3E-4 T 29-03-2018 IPR006597 Sel1-like repeat AM354_RS18685 36aa6b6c208e831b10d0f636539c6617 217 Pfam PF08238 Sel1 repeat 101 144 2.7E-6 T 29-03-2018 IPR006597 Sel1-like repeat AM354_RS18685 36aa6b6c208e831b10d0f636539c6617 217 Pfam PF08238 Sel1 repeat 66 99 4.3E-6 T 29-03-2018 IPR006597 Sel1-like repeat AM354_RS18685 36aa6b6c208e831b10d0f636539c6617 217 Pfam PF08238 Sel1 repeat 146 180 1.9E-5 T 29-03-2018 IPR006597 Sel1-like repeat AM354_RS07315 fff0db28e360645cc4d489a62c23d386 301 SUPERFAMILY SSF103481 40 135 8.63E-13 T 29-03-2018 AM354_RS07315 fff0db28e360645cc4d489a62c23d386 301 Pfam PF00892 EamA-like transporter family 7 130 5.4E-16 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM354_RS07315 fff0db28e360645cc4d489a62c23d386 301 Pfam PF00892 EamA-like transporter family 146 288 2.2E-14 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM354_RS07315 fff0db28e360645cc4d489a62c23d386 301 SUPERFAMILY SSF103481 208 289 1.57E-9 T 29-03-2018 AM354_RS02305 cd8018c5e60024e2c8b550ef7a448e86 261 Pfam PF01925 Sulfite exporter TauE/SafE 15 256 4.6E-44 T 29-03-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 AM354_RS05595 4fde0ca77256afdc79f8cf04eb4a4057 242 Pfam PF04288 MukE-like family 10 230 3.3E-126 T 29-03-2018 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE GO:0005737|GO:0007059|GO:0030261 AM354_RS05595 4fde0ca77256afdc79f8cf04eb4a4057 242 Hamap MF_01802 Chromosome partition protein MukE [mukE]. 10 240 50.793 T 29-03-2018 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE GO:0005737|GO:0007059|GO:0030261 AM354_RS01635 2d0a5b910db856b620322d2ba904b5d2 300 Gene3D G3DSA:3.40.50.1820 1 300 1.8E-64 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS01635 2d0a5b910db856b620322d2ba904b5d2 300 SUPERFAMILY SSF53474 17 298 1.04E-75 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold AM354_RS01635 2d0a5b910db856b620322d2ba904b5d2 300 Pfam PF07859 alpha/beta hydrolase fold 79 282 1.7E-73 T 29-03-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 AM354_RS20660 7c89f9a4ecddfb4af2ec12b51e584cc7 136 Pfam PF11162 Protein of unknown function (DUF2946) 11 128 5.6E-15 T 29-03-2018 IPR021333 Protein of unknown function DUF2946 AM354_RS22810 e3c8b9cf219f8ad5ec517637295832db 185 Pfam PF04315 Elongation factor P hydroxylase 16 178 3.3E-81 T 29-03-2018 IPR007411 Elongation factor P hydroxylase AM354_RS08785 34873a88a04582509ed9dad75effb259 421 Pfam PF02447 GntP family permease 9 414 4.6E-23 T 29-03-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AM354_RS01435 f8ee49a7002f4d1ed5ea75ba56f6a8f5 161 Gene3D G3DSA:1.10.150.160 12 126 8.9E-4 T 29-03-2018 AM354_RS03910 d76557cb8416b42a356e5b287992a613 168 Pfam PF04985 Phage tail tube protein FII 7 161 1.7E-20 T 29-03-2018 IPR006498 Tail tube protein AM354_RS06625 296dcf396d8affe71aa32d8faac1ac34 196 SMART SM00421 138 195 0.0039 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM354_RS06625 296dcf396d8affe71aa32d8faac1ac34 196 SUPERFAMILY SSF46894 132 191 1.12E-8 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM354_RS06625 296dcf396d8affe71aa32d8faac1ac34 196 Gene3D G3DSA:1.10.10.10 106 194 7.4E-6 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS17490 9d5a6539bc8cf6d17525a16e8fb19cd2 142 ProDom PD020942 TRANSPOSASE C TN554 TRANSPOSON TRANSPOSITION FOR DNA-BINDING TRANSPOSABLE DNA ELEMENT 15 104 0.007 T 29-03-2018 AM354_RS17490 9d5a6539bc8cf6d17525a16e8fb19cd2 142 Gene3D G3DSA:1.10.3060.10 15 127 6.8E-4 T 29-03-2018 AM354_RS11880 cf326bd2cc26ef9b5ca99e10ec372228 34 Pfam PF10940 Protein of unknown function (DUF2618) 8 32 2.6E-11 T 29-03-2018 IPR021237 Protein of unknown function DUF2618 AM354_RS17725 6bb4d60cd313343a17702ddf5134fb90 50 SUPERFAMILY SSF81338 1 44 2.62E-14 T 29-03-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 AM354_RS17725 6bb4d60cd313343a17702ddf5134fb90 50 Pfam PF00230 Major intrinsic protein 1 34 7.3E-10 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM354_RS17725 6bb4d60cd313343a17702ddf5134fb90 50 Gene3D G3DSA:1.20.1080.10 1 49 2.1E-13 T 29-03-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 AM354_RS22510 0678c8c2c126195cce2fa4fed6247194 176 Gene3D G3DSA:2.60.40.1090 27 176 5.1E-36 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS22510 0678c8c2c126195cce2fa4fed6247194 176 SUPERFAMILY SSF49401 28 176 6.46E-34 T 29-03-2018 IPR008966 Adhesion domain AM354_RS22510 0678c8c2c126195cce2fa4fed6247194 176 Pfam PF00419 Fimbrial protein 29 175 3.5E-16 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS11535 a8eda715fb070463dcacafc0a4dbd47a 67 Pfam PF04328 Selenoprotein, putative 5 67 7.1E-30 T 29-03-2018 IPR007423 Selenoprotein, putative AM354_RS07680 d1ad19d63ed41d2cacddf8a303f3bcab 236 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 20 232 1.8E-60 T 29-03-2018 IPR006214 Bax inhibitor 1-related AM354_RS07350 6b23d353399e443607d4ece76ed4806d 100 Gene3D G3DSA:1.10.1220.10 43 99 9.4E-4 T 29-03-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AM354_RS00210 4e9df4710bc62f82b63285dc51f48016 511 Pfam PF04293 SpoVR like protein 20 451 4.6E-177 T 29-03-2018 IPR007390 Sporulation stage V, protein R AM354_RS22375 4ffb1d13ca2098f5b512d46a77045ec7 155 Gene3D G3DSA:1.20.120.330 46 140 6.9E-4 T 29-03-2018 AM354_RS22375 4ffb1d13ca2098f5b512d46a77045ec7 155 Pfam PF14282 FlxA-like protein 63 146 3.0E-18 T 29-03-2018 IPR025577 FlxA-like protein AM354_RS02745 11953f933e3a5959a2ce650ee7026faa 164 Pfam PF11158 Protein of unknown function (DUF2938) 10 157 3.8E-51 T 29-03-2018 IPR021329 Protein of unknown function DUF2938 AM354_RS03335 f0a025d6f4a099b647fffbf56b05e6b8 554 Pfam PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase 10 239 1.1E-34 T 29-03-2018 IPR003342 Glycosyl transferase family 39/83 GO:0000030|GO:0006493|GO:0016020 Reactome: R-HSA-5173105 AM354_RS03335 f0a025d6f4a099b647fffbf56b05e6b8 554 Hamap MF_01165 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase [arnT]. 3 553 42.845 T 29-03-2018 IPR022839 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase GO:0016763 AM354_RS21860 9579ba3c106d98ccc9e02dd8aa800b8a 117 Pfam PF02316 Mu DNA-binding domain 11 59 6.6E-12 T 29-03-2018 IPR003314 Mu-type HTH domain GO:0003677 AM354_RS21860 9579ba3c106d98ccc9e02dd8aa800b8a 117 Gene3D G3DSA:1.10.10.10 3 67 1.3E-25 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS21860 9579ba3c106d98ccc9e02dd8aa800b8a 117 SUPERFAMILY SSF46955 3 61 8.24E-20 T 29-03-2018 IPR009061 Putative DNA-binding domain AM354_RS05800 4b6f33312aea630a75628e241ef1b3a7 317 Pfam PF04393 Protein of unknown function (DUF535) 33 311 9.2E-100 T 29-03-2018 IPR007488 Protein of unknown function DUF535 AM354_RS15055 9880ad833e5fc4a1064cdc9ebe05893e 127 Pfam PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 9 107 2.2E-6 T 29-03-2018 IPR019289 Bacteriophage tail protein Gp41, putative AM354_RS06170 b983190e1a22ce13f9d25a5b077f4e4a 15 Pfam PF08047 Histidine operon leader peptide 1 15 2.7E-9 T 29-03-2018 IPR012565 Histidine operon leader peptide GO:0000105 AM354_RS01380 2980c0338992d45cbef2e974ee89fc9a 221 Pfam PF11769 Protein of unknown function (DUF3313) 19 216 7.1E-44 T 29-03-2018 IPR021747 Protein of unknown function DUF3313 AM354_RS08770 d50b60f32347c88b8444b28c7f231427 434 Pfam PF00294 pfkB family carbohydrate kinase 75 294 1.5E-9 T 29-03-2018 IPR011611 Carbohydrate kinase PfkB AM354_RS08770 d50b60f32347c88b8444b28c7f231427 434 SUPERFAMILY SSF53613 36 305 6.55E-46 T 29-03-2018 IPR029056 Ribokinase-like AM354_RS08770 d50b60f32347c88b8444b28c7f231427 434 SUPERFAMILY SSF53613 338 416 6.55E-46 T 29-03-2018 IPR029056 Ribokinase-like AM354_RS08770 d50b60f32347c88b8444b28c7f231427 434 Gene3D G3DSA:3.40.1190.20 32 431 3.1E-43 T 29-03-2018 IPR029056 Ribokinase-like AM354_RS15030 368d5525ee97f92c84536ee8da695091 149 Pfam PF07409 Phage protein GP46 28 139 9.9E-36 T 29-03-2018 IPR010877 Bacteriophage Mu, Gp46 AM354_RS12645 3f18a5d9846a58d5a77dca17bc9ed718 223 Pfam PF07356 Protein of unknown function (DUF1481) 34 219 4.3E-74 T 29-03-2018 IPR010858 Protein of unknown function DUF1481 AM354_RS10530 d779a69921fae30c372aaf066b8dd778 171 Pfam PF05258 Protein of unknown function (DUF721) 26 98 1.2E-14 T 29-03-2018 IPR007922 Protein of unknown function DUF721/UPF0232 AM354_RS14275 2ed0bb855df003f5bbc866745eeacbda 144 Pfam PF12098 Protein of unknown function (DUF3574) 43 144 4.6E-40 T 29-03-2018 IPR021957 Protein of unknown function DUF3574 AM354_RS02030 6b31d71e3b5a9c59fd1d337a039df3a8 151 Pfam PF11162 Protein of unknown function (DUF2946) 15 147 1.2E-16 T 29-03-2018 IPR021333 Protein of unknown function DUF2946 AM354_RS06790 54303f4ea2187e37ee18c806de4dbedd 327 Gene3D G3DSA:3.60.110.10 4 301 3.0E-61 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AM354_RS06790 54303f4ea2187e37ee18c806de4dbedd 327 SUPERFAMILY SSF56317 208 303 5.49E-59 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AM354_RS06790 54303f4ea2187e37ee18c806de4dbedd 327 SUPERFAMILY SSF56317 5 177 5.49E-59 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AM354_RS06790 54303f4ea2187e37ee18c806de4dbedd 327 Pfam PF00795 Carbon-nitrogen hydrolase 6 281 1.9E-39 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AM354_RS11920 d032cb2a907db21db2fe1160e8c7138c 379 Pfam PF12698 ABC-2 family transporter protein 21 358 9.2E-31 T 29-03-2018 AM354_RS11920 d032cb2a907db21db2fe1160e8c7138c 379 Gene3D G3DSA:3.40.1710.10 34 194 5.1E-27 T 29-03-2018 AM354_RS10440 70c3ae9bc669b3557dd36b545b7f223c 204 Pfam PF03458 UPF0126 domain 92 161 1.1E-18 T 29-03-2018 IPR005115 Uncharacterised domain UPF0126 AM354_RS10440 70c3ae9bc669b3557dd36b545b7f223c 204 Pfam PF03458 UPF0126 domain 4 78 1.9E-22 T 29-03-2018 IPR005115 Uncharacterised domain UPF0126 AM354_RS10700 e26a1384a7986b5876efba8bba720a02 32 Pfam PF08049 IlvB leader peptide 2 32 8.7E-12 T 29-03-2018 IPR012566 IlvB leader peptide AM354_RS05645 d8cdc045812a7899e1120197b0ea4d10 468 Pfam PF07063 Domain of unknown function (DUF1338) 11 414 7.9E-119 T 29-03-2018 IPR009770 Domain of unknown function DUF1338 AM354_RS05645 d8cdc045812a7899e1120197b0ea4d10 468 SMART SM01150 13 414 1.0E-231 T 29-03-2018 IPR009770 Domain of unknown function DUF1338 AM354_RS19510 6f99da527b4b8904e3aabb548d62560e 105 Pfam PF14384 BrnA antitoxin of type II toxin-antitoxin system 41 97 5.3E-15 T 29-03-2018 IPR025528 BrnA antitoxin of type II toxin-antitoxin system AM354_RS03780 8ac71fb22b077121b58169e73060d117 142 Gene3D G3DSA:3.40.50.620 2 142 2.9E-18 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM354_RS03780 8ac71fb22b077121b58169e73060d117 142 SUPERFAMILY SSF52402 3 139 1.26E-22 T 29-03-2018 AM354_RS03780 8ac71fb22b077121b58169e73060d117 142 Pfam PF00582 Universal stress protein family 3 138 2.7E-14 T 29-03-2018 IPR006016 UspA GO:0006950 AM354_RS03780 8ac71fb22b077121b58169e73060d117 142 PIRSF PIRSF006276 1 141 7.7E-40 T 29-03-2018 IPR006015 Universal stress protein A AM354_RS04460 1a744774a4bba284bd4287270cc9c49f 500 PIRSF PIRSF006060 1 474 7.4E-47 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM354_RS04460 1a744774a4bba284bd4287270cc9c49f 500 Pfam PF13520 Amino acid permease 10 433 1.7E-26 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM354_RS11600 dc3863393eebbeb8c7634b6427bf53f8 342 Pfam PF14390 Putative PD-(D/E)XK family member, (DUF4420) 12 317 7.8E-64 T 29-03-2018 IPR025534 Putative PD-(D/E)XK family member (DUF4420) AM354_RS08980 dfdea0e4983ec748ca7673639ba60324 164 Pfam PF15941 FidL-like putative membrane protein 81 160 6.8E-10 T 29-03-2018 IPR031854 Putative membrane protein FidL-like AM354_RS09365 720b0dc17508618a1e44f0388d45638b 518 Pfam PF03169 OPT oligopeptide transporter protein 252 513 7.1E-20 T 29-03-2018 IPR004813 Oligopeptide transporter, OPT superfamily GO:0055085 AM354_RS09365 720b0dc17508618a1e44f0388d45638b 518 Pfam PF03169 OPT oligopeptide transporter protein 17 195 4.1E-12 T 29-03-2018 IPR004813 Oligopeptide transporter, OPT superfamily GO:0055085 AM354_RS24945 5dd475e99852f0a584e771fab31bc19d 237 Gene3D G3DSA:3.40.50.850 12 233 6.5E-52 T 29-03-2018 AM354_RS24945 5dd475e99852f0a584e771fab31bc19d 237 SUPERFAMILY SSF52499 25 232 8.5E-57 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM354_RS24945 5dd475e99852f0a584e771fab31bc19d 237 Pfam PF00857 Isochorismatase family 51 228 5.8E-45 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM354_RS13025 44f07c566c35d20cd9417d2053ad54ba 427 Pfam PF11862 Domain of unknown function (DUF3382) 4 102 3.5E-26 T 29-03-2018 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal AM354_RS13025 44f07c566c35d20cd9417d2053ad54ba 427 Gene3D G3DSA:1.10.3470.10 100 402 2.0E-47 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM354_RS13025 44f07c566c35d20cd9417d2053ad54ba 427 Pfam PF02653 Branched-chain amino acid transport system / permease component 111 397 7.1E-58 T 29-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AM354_RS05315 e7eaf15081a59df0107b1c2a30eaae1e 142 Pfam PF07681 DoxX 14 95 3.5E-15 T 29-03-2018 IPR032808 DoxX family AM354_RS03895 522062a20202c56dfe6ea9b737805cb4 152 Pfam PF06995 Phage P2 GpU 28 147 5.0E-36 T 29-03-2018 IPR009734 Myoviridae, GpU AM354_RS18390 ec28d558c47806fb33c932da55576375 136 TIGRFAM TIGR03751 conj_TIGR03751: conjugative transfer region lipoprotein, TIGR03751 family 9 133 3.7E-53 T 29-03-2018 IPR022262 Lipoprotein, putative AM354_RS09400 a288414a74de23e9b8f420c1a62920ef 317 Pfam PF16220 Domain of unknown function (DUF4880) 10 51 1.2E-8 T 29-03-2018 IPR032623 FecR, N-terminal AM354_RS09400 a288414a74de23e9b8f420c1a62920ef 317 PIRSF PIRSF018266 1 316 5.8E-72 T 29-03-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component AM354_RS09400 a288414a74de23e9b8f420c1a62920ef 317 Pfam PF04773 FecR protein 112 206 6.3E-16 T 29-03-2018 IPR006860 FecR protein AM354_RS08890 0fcbc3f18623474f1430ff191ddce9d3 122 Pfam PF10757 Biofilm formation regulator YbaJ 1 118 8.1E-66 T 29-03-2018 IPR019693 Biofilm formation regulator YbaJ AM354_RS07855 bb9eb9c01073a764514c63d5c20f7e25 115 Pfam PF07769 psiF repeat 36 68 2.3E-15 T 29-03-2018 IPR011690 Phosphate-starvation-induced PsiF repeat AM354_RS07855 bb9eb9c01073a764514c63d5c20f7e25 115 Pfam PF07769 psiF repeat 80 112 6.1E-19 T 29-03-2018 IPR011690 Phosphate-starvation-induced PsiF repeat AM354_RS25145 75f4fce2b63e4b75a217a6c9fe64b441 211 Pfam PF12059 Protein of unknown function (DUF3540) 22 211 6.7E-64 T 29-03-2018 IPR021927 Protein of unknown function DUF3540 AM354_RS05720 d89494264cba205e4b42fddad6fdc7ed 121 Pfam PF08818 Domain of unknown function (DU1801) 25 115 8.7E-12 T 29-03-2018 IPR014922 Domain of unknown function DUF1801 AM354_RS05720 d89494264cba205e4b42fddad6fdc7ed 121 SUPERFAMILY SSF159888 20 118 1.01E-10 T 29-03-2018 AM354_RS07575 0f6549ac8e726b622c165b1dc0816935 145 Pfam PF05232 Chlorhexidine efflux transporter 3 65 3.5E-18 T 29-03-2018 IPR007896 Chlorhexidine efflux transporter AM354_RS07575 0f6549ac8e726b622c165b1dc0816935 145 Pfam PF05232 Chlorhexidine efflux transporter 71 133 1.0E-24 T 29-03-2018 IPR007896 Chlorhexidine efflux transporter AM354_RS07310 c97b799217edbd495b882c0cb3716d26 196 Pfam PF01810 LysE type translocator 14 193 4.4E-19 T 29-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AM354_RS05020 f2aada6b86511565a3eed46a59049875 376 Hamap MF_01066 Glucans biosynthesis protein C [mdoC]. 2 376 38.577 T 29-03-2018 IPR023723 Glucan biosynthesis protein C GO:0016741 AM354_RS05020 f2aada6b86511565a3eed46a59049875 376 Pfam PF01757 Acyltransferase family 11 358 1.9E-30 T 29-03-2018 IPR002656 Acyltransferase 3 GO:0016747 AM354_RS11400 77b21f706a7811c64b852ad7fca970dc 135 Pfam PF02472 Biopolymer transport protein ExbD/TolR 8 134 3.6E-30 T 29-03-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 AM354_RS15105 97702f9c665c42e345135449ae81e491 279 Pfam PF04233 Phage Mu protein F like protein 51 181 7.3E-18 T 29-03-2018 IPR006528 Phage head morphogenesis domain AM354_RS13315 109f685ec50b3028fc88fdbc0770f449 455 Pfam PF06899 WzyE protein, O-antigen assembly polymerase 1 441 9.0E-260 T 29-03-2018 IPR010691 Probable ECA polymerase WzyE GO:0009246|GO:0016021 AM354_RS13315 109f685ec50b3028fc88fdbc0770f449 455 Hamap MF_01003 Probable ECA polymerase [wzyE]. 1 447 39.322 T 29-03-2018 IPR010691 Probable ECA polymerase WzyE GO:0009246|GO:0016021 AM354_RS09460 91d596eae4bb932f11d6eb1ab430362c 453 Pfam PF13449 Esterase-like activity of phytase 53 391 2.1E-51 T 29-03-2018 IPR027372 Phytase-like domain AM354_RS25850 ff286f1be0d79f90dc7a3ed915cd997d 63 Pfam PF07358 Protein of unknown function (DUF1482) 1 57 5.2E-30 T 29-03-2018 IPR009954 Protein of unknown function DUF1482 AM354_RS15190 fc073ffca92de9feb980dffed13ceffd 204 Pfam PF11363 Protein of unknown function (DUF3164) 10 202 1.1E-84 T 29-03-2018 IPR021505 Bacteriophage B3, Orf6 AM354_RS03585 4e894e918d3d97be9a375e5a4fe4c6ac 876 Pfam PF02470 MlaD protein 746 807 8.1E-8 T 29-03-2018 IPR003399 Mce/MlaD AM354_RS03585 4e894e918d3d97be9a375e5a4fe4c6ac 876 Pfam PF02470 MlaD protein 281 348 2.4E-6 T 29-03-2018 IPR003399 Mce/MlaD AM354_RS03585 4e894e918d3d97be9a375e5a4fe4c6ac 876 Pfam PF02470 MlaD protein 634 722 8.7E-10 T 29-03-2018 IPR003399 Mce/MlaD AM354_RS03585 4e894e918d3d97be9a375e5a4fe4c6ac 876 Pfam PF02470 MlaD protein 394 455 9.4E-6 T 29-03-2018 IPR003399 Mce/MlaD AM354_RS03585 4e894e918d3d97be9a375e5a4fe4c6ac 876 Pfam PF02470 MlaD protein 46 137 7.9E-17 T 29-03-2018 IPR003399 Mce/MlaD AM354_RS03585 4e894e918d3d97be9a375e5a4fe4c6ac 876 Pfam PF02470 MlaD protein 163 220 2.9E-6 T 29-03-2018 IPR003399 Mce/MlaD AM354_RS26135 ee6b4f16ed61cd08fde00e9a1c87f093 310 Pfam PF16280 Domain of unknown function (DUF4928) 23 307 1.2E-56 T 29-03-2018 IPR032564 Protein of unknown function DUF4928 AM354_RS07870 a82f9fb1610b7e338f151dd8cdb43d24 396 Pfam PF05987 Bacterial protein of unknown function (DUF898) 12 389 1.2E-95 T 29-03-2018 IPR010295 Protein of unknown function DUF898 AM354_RS02015 b1207f5dbcaa992126e40e0f32725eee 119 Pfam PF01638 HxlR-like helix-turn-helix 25 115 3.2E-29 T 29-03-2018 IPR002577 Helix-turn-helix, HxlR type AM354_RS02015 b1207f5dbcaa992126e40e0f32725eee 119 SUPERFAMILY SSF46785 17 114 1.51E-29 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS02015 b1207f5dbcaa992126e40e0f32725eee 119 Gene3D G3DSA:1.10.10.10 23 116 4.7E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM354_RS23380 838eb258cb3c221f969f83e9480ba46b 120 Pfam PF06530 Phage antitermination protein Q 2 119 1.2E-40 T 29-03-2018 IPR010534 Bacteriophage 933W, GpQ GO:0003677|GO:0060567 AM354_RS22530 0bf7a30989054a0db7e4d88b674f13e7 136 Pfam PF10697 Protein of unknown function (DUF2502) 28 114 1.6E-33 T 29-03-2018 IPR019638 Protein of unknown function DUF2502 AM354_RS03965 f711225b27b308357645cb3b61277df5 136 Pfam PF14000 DNA packaging protein FI 4 132 1.5E-26 T 29-03-2018 IPR025147 DNA packaging protein FI AM354_RS01330 3ff19cf9551b292727b5702c2476522a 142 Pfam PF03724 META domain 30 133 8.4E-18 T 29-03-2018 IPR005184 Domain of unknown function DUF306, Meta/HslJ AM354_RS25785 080d7c93e8ca05773892a4246992fabd 50 Pfam PF10617 Protein of unknown function (DUF2474) 11 49 2.5E-22 T 29-03-2018 IPR018895 Protein of unknown function DUF2474 AM354_RS17120 2f10641e47969e0500a3a3ba22df97db 95 Pfam PF13997 YqjK-like protein 14 86 1.7E-31 T 29-03-2018 IPR025612 YqjK-like protein AM354_RS23400 811b707e0307a0a5232815222b2dccee 130 TIGRFAM TIGR01725 phge_HK97_gp10: phage protein, HK97 gp10 family 7 127 1.5E-8 T 29-03-2018 IPR010064 Bacteriophage HK97-gp10, putative tail-component AM354_RS02875 6b48858838b525cea82d0923f99c5a59 334 Pfam PF13593 SBF-like CPA transporter family (DUF4137) 10 319 1.1E-103 T 29-03-2018 IPR016833 Putative sodium bile acid cotransporter AM354_RS02875 6b48858838b525cea82d0923f99c5a59 334 PIRSF PIRSF026166 1 334 1.8E-133 T 29-03-2018 IPR016833 Putative sodium bile acid cotransporter AM354_RS15120 7f8fecb97a8d682b7e1ef28e959cd617 191 Pfam PF11985 Protein of unknown function (DUF3486) 8 189 1.3E-58 T 29-03-2018 IPR021874 Bacteriophage Mu, Gp27 AM354_RS17145 696ad6e2909398142b41e4f7407add18 226 Pfam PF09335 SNARE associated Golgi protein 48 172 4.4E-21 T 29-03-2018 IPR032816 SNARE associated Golgi protein AM354_RS03995 6a5e719397deb35f96fdcc9c7833807f 641 Pfam PF05876 Phage terminase large subunit (GpA) 39 601 2.3E-160 T 29-03-2018 IPR008866 Bacteriophage lambda, GpA AM354_RS07035 57c55e4244970009788322e52feb79c4 343 Pfam PF00487 Fatty acid desaturase 54 286 4.9E-32 T 29-03-2018 IPR005804 Fatty acid desaturase domain GO:0006629 AM354_RS03605 22d02ad29edfb07a03332af7638e373a 184 Pfam PF05229 Spore Coat Protein U domain 32 181 3.1E-32 T 29-03-2018 IPR007893 Spore coat protein U AM354_RS03605 22d02ad29edfb07a03332af7638e373a 184 SMART SM00972 121 181 2.6E-18 T 29-03-2018 IPR007893 Spore coat protein U AM354_RS03605 22d02ad29edfb07a03332af7638e373a 184 Gene3D G3DSA:2.60.40.1090 15 184 0.0024 T 29-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM354_RS18310 dbc94aba95eccc2546e144f05a83cf62 240 TIGRFAM TIGR03759 conj_TIGR03759: integrating conjugative element protein, PFL_4693 family 41 235 2.1E-80 T 29-03-2018 IPR022293 Integrating conjugative element protein, PFL4693 AM354_RS07835 6799096af3bcd5ead54668a5166a8d75 272 Pfam PF02517 CAAX protease self-immunity 169 258 2.4E-19 T 29-03-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 AM354_RS13250 bc05883357bccee57142ed6fc25753eb 68 Pfam PF13627 Prokaryotic lipoprotein-attachment site 8 29 5.7E-9 T 29-03-2018 IPR032831 Prokaryotic lipoprotein-attachment site AM354_RS18740 76be11fcbfa2bacd965caa70d9354bc5 200 Pfam PF11284 Protein of unknown function (DUF3085) 22 108 1.9E-21 T 29-03-2018 IPR021436 Protein of unknown function DUF3085 AM354_RS14980 0e6e43c4c25fb2cfe69b3f332af01621 137 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 131 2.9E-16 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AM354_RS14980 0e6e43c4c25fb2cfe69b3f332af01621 137 Gene3D G3DSA:3.10.180.10 1 134 6.1E-27 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS14980 0e6e43c4c25fb2cfe69b3f332af01621 137 SUPERFAMILY SSF54593 6 135 3.22E-27 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM354_RS20815 476d966c187bce2291a8fe2b1afaf0a3 167 Pfam PF06891 P2 phage tail completion protein R (GpR) 1 138 3.6E-27 T 29-03-2018 IPR009678 Bacteriophage tail completion protein R AM354_RS07565 ef177604720cdd958e039e30415c1d21 187 Pfam PF09335 SNARE associated Golgi protein 24 144 4.9E-17 T 29-03-2018 IPR032816 SNARE associated Golgi protein AM354_RS24750 2b0549f2b57aba27bc9b16460c448d40 82 Pfam PF04226 Transglycosylase associated protein 33 82 3.4E-15 T 29-03-2018 IPR007341 Transglycosylase-associated protein GO:0016021 AM354_RS04745 786ec9258a470fb56596b4ecaaa2095d 129 Pfam PF07233 Protein of unknown function (DUF1425) 38 128 4.5E-26 T 29-03-2018 IPR010824 Protein of unknown function DUF1425 AM354_RS20440 1824739f11ed1eb711c183cf28cd079d 248 Pfam PF03591 AzlC protein 27 167 7.2E-38 T 29-03-2018 IPR011606 Branched-chain amino acid transport, permease AM354_RS04135 054a7748a228dc5ea63c97be138d9a06 81 Pfam PF07825 Excisionase-like protein 5 73 7.0E-13 T 29-03-2018 IPR012884 Excisionase-like GO:0003677|GO:0006310 AM354_RS04135 054a7748a228dc5ea63c97be138d9a06 81 SUPERFAMILY SSF46955 4 79 9.7E-19 T 29-03-2018 IPR009061 Putative DNA-binding domain AM354_RS04135 054a7748a228dc5ea63c97be138d9a06 81 Gene3D G3DSA:1.10.1660.20 5 76 5.0E-28 T 29-03-2018 AM354_RS04000 66dc00d30f90df021aa3e279bf1429ad 169 Pfam PF07471 Phage DNA packaging protein Nu1 5 150 1.4E-30 T 29-03-2018 IPR010906 Bacteriophage lambda, Nu1, terminase small subunit AM354_RS10105 a54c8b0315ec71c0d8689cd9a80cfba7 263 Pfam PF01578 Cytochrome C assembly protein 37 260 5.2E-44 T 29-03-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 AM354_RS12430 bd610a58f40daa9c8f69d8bdcab2f56a 43 Pfam PF08085 Entericidin EcnA/B family 22 42 3.5E-10 T 29-03-2018 IPR012556 Entericidin A/B GO:0009636|GO:0016020 AM354_RS15005 e98a851e35e18084180669aacc723ea3 660 Gene3D G3DSA:2.160.20.10 114 660 1.9E-11 T 29-03-2018 IPR012334 Pectin lyase fold AM354_RS23865 b8ad061a1ec9594114d518fc48311ede 401 Pfam PF14020 Protein of unknown function (DUF4236) 3 56 3.4E-20 T 29-03-2018 IPR025330 Domain of unknown function DUF4236 AM354_RS23830 d4f4538342d68b91708a0fe2a9e41732 38 Pfam PF04886 PT repeat 18 35 8.4E-9 T 29-03-2018 IPR006970 PT repeat AM354_RS10980 6c1c0833c7e8461f84cec87e5bc7211d 201 Pfam PF13689 Domain of unknown function (DUF4154) 59 195 3.9E-31 T 29-03-2018 IPR025293 Protein of unknown function DUF4154 AM354_RS18830 de516953dea5e1f8671b6da29b602204 240 Pfam PF11101 Protein of unknown function (DUF2884) 25 239 6.0E-48 T 29-03-2018 IPR021307 Protein of unknown function DUF2884 AM354_RS05000 9f6308b644162524176c6feba17b809a 181 Gene3D G3DSA:3.40.630.30 1 179 1.0E-14 T 29-03-2018 AM354_RS05000 9f6308b644162524176c6feba17b809a 181 SUPERFAMILY SSF55729 1 161 6.49E-14 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM354_RS05485 c05d3e23d5b46985653d951431ac580c 548 Pfam PF02470 MlaD protein 44 134 8.6E-11 T 29-03-2018 IPR003399 Mce/MlaD AM354_RS05485 c05d3e23d5b46985653d951431ac580c 548 Pfam PF02470 MlaD protein 160 219 1.5E-7 T 29-03-2018 IPR003399 Mce/MlaD AM354_RS05485 c05d3e23d5b46985653d951431ac580c 548 Pfam PF02470 MlaD protein 289 391 3.9E-13 T 29-03-2018 IPR003399 Mce/MlaD AM354_RS10675 0fcddc04fcba9c3fbfeacd7ec6ab09c9 57 Pfam PF15894 Inhibitor of glucose uptake transporter SgrT 6 54 4.5E-28 T 29-03-2018 IPR031767 Inhibitor of glucose uptake transporter SgrT GO:0046325 AM354_RS21675 7dd7be02417bfbd1d715f62ad461db82 86 Pfam PF06643 Protein of unknown function (DUF1158) 8 79 1.3E-6 T 29-03-2018 IPR010590 Protein of unknown function DUF1158 AM354_RS14515 82fa72e69c6998b433f415b16f93ef99 194 Pfam PF07305 Protein of unknown function (DUF1454) 7 193 8.0E-81 T 29-03-2018 IPR009918 Protein of unknown function DUF1454 AM354_RS05005 2286f60e20ddb16bfc97bfcbe97caf33 81 Pfam PF07119 Protein of unknown function (DUF1375) 15 75 2.4E-8 T 29-03-2018 IPR010780 Protein of unknown function DUF1375 AM354_RS20585 b9752b0c6a0df82e60ec0b7db18f0765 137 Pfam PF07681 DoxX 10 90 1.6E-16 T 29-03-2018 IPR032808 DoxX family AM354_RS10890 8921d1cf507777e18da70a50444a906d 199 Pfam PF01184 GPR1/FUN34/yaaH family 3 181 4.2E-42 T 29-03-2018 IPR000791 Acetate transporter GPR1/FUN34/SatP family GO:0016021 AM354_RS18405 106dea0fbe60275bafcfebf1cb23513f 314 Pfam PF07751 Abi-like protein 48 211 5.7E-6 T 29-03-2018 IPR011664 Abortive infection system protein AbiD/AbiF-like AM354_RS23840 c0ca42aa96f2a3270443de5a80af2b1a 483 Gene3D G3DSA:1.10.150.20 401 480 0.0024 T 29-03-2018 AM354_RS23840 c0ca42aa96f2a3270443de5a80af2b1a 483 Gene3D G3DSA:3.40.50.300 44 223 0.0022 T 29-03-2018 AM354_RS24470 8187732d64d118fb497ace6cd3f87558 210 Pfam PF14090 Helix-turn-helix domain 145 209 2.7E-6 T 29-03-2018 AM354_RS18505 a7246a9d8c51abbf796b9e3a20f0fb37 405 Pfam PF06527 TniQ 8 165 1.2E-24 T 29-03-2018 IPR009492 TniQ AM354_RS04910 41ed9701c015a3b40f41d853f59ede50 38 Pfam PF10968 Protein of unknown function (DUF2770) 2 36 4.0E-18 T 29-03-2018 IPR024494 Protein of unknown function DUF2770 AM354_RS01065 9becde22e431cda962812afb65f9c0f6 188 Pfam PF14437 MafB19-like deaminase 69 181 4.4E-16 T 29-03-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 AM354_RS24030 75da0f227e2744edda54b32a237dd27c 141 Pfam PF07681 DoxX 25 99 8.2E-13 T 29-03-2018 IPR032808 DoxX family AM354_RS05035 86539aa8e324dfe4d33b2a310cbe4fe6 167 Pfam PF10777 Inner membrane protein YlaC 1 153 1.2E-67 T 29-03-2018 IPR019713 Inner membrane protein YlaC AM354_RS20750 23299f48e83254403e57e001fd52396e 71 Pfam PF10893 Protein of unknown function (DUF2724) 3 36 6.9E-7 T 29-03-2018 IPR021221 Bacteriophage 186, Fil AM354_RS00725 28ef3e1bf22b878101acf60aa4b5723a 276 Gene3D G3DSA:1.20.5.1070 57 113 8.3E-7 T 29-03-2018 AM354_RS00725 28ef3e1bf22b878101acf60aa4b5723a 276 Gene3D G3DSA:1.20.5.1070 114 163 3.1E-9 T 29-03-2018 AM354_RS00725 28ef3e1bf22b878101acf60aa4b5723a 276 SUPERFAMILY SSF57997 40 162 5.45E-14 T 29-03-2018 AM354_RS08140 51a091b10e922d01eb7eba80ce7d70a7 99 Pfam PF12977 Domain of Unknown Function with PDB structure (DUF3861) 4 95 4.7E-36 T 29-03-2018 IPR024476 Protein of unknown function DUF3861 AM354_RS20865 273af93273b2360b601c00e51832d7bd 115 Pfam PF10761 Protein of unknown function (DUF2590) 7 104 1.4E-44 T 29-03-2018 IPR019697 Bacteriophage HP1, Orf28 AM354_RS15870 0fdcf9ccdc9f18aae98dcd182557a9fe 200 Pfam PF01810 LysE type translocator 16 190 6.4E-18 T 29-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AM354_RS18475 c8ec1d34ba971255cc69653459ff67b8 223 Pfam PF02517 CAAX protease self-immunity 124 213 3.9E-9 T 29-03-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 AM354_RS05040 6fd48bc5d346f3fa7ee9437ed1c52dd1 99 Pfam PF10796 Sigma-S stabilisation anti-adaptor protein 8 61 3.6E-5 T 29-03-2018 IPR019732 Sigma-S stabilisation anti-adaptor protein GO:0005737 AM354_RS11945 f34cae43fc66138a8520d5a88dd93e4f 404 Pfam PF04143 Sulphur transport 4 160 2.1E-24 T 29-03-2018 IPR007272 Sulphur transport domain AM354_RS11945 f34cae43fc66138a8520d5a88dd93e4f 404 Pfam PF04143 Sulphur transport 237 393 5.4E-25 T 29-03-2018 IPR007272 Sulphur transport domain AM354_RS07495 e05b9c91b8abc4abc2fce5b12c602c26 196 Pfam PF06930 Protein of unknown function (DUF1282) 8 179 5.3E-54 T 29-03-2018 IPR009698 Protein of unknown function DUF1282 AM354_RS26190 a2c5eb401c69028a15214179c3085905 338 Pfam PF04796 Plasmid encoded RepA protein 121 273 1.1E-29 T 29-03-2018 IPR006881 Plasmid encoded RepA protein AM354_RS03840 f459ce5c41b1a1264a83c0b8327c22aa 371 Pfam PF01594 AI-2E family transporter 10 339 2.1E-50 T 29-03-2018 IPR002549 Transmembrane protein TqsA-like AM354_RS00675 964a2a1c78229be113a235c8a68955a6 121 Pfam PF13876 Phage protein (N4 Gp49/phage Sf6 gene 66) family 20 118 2.5E-36 T 29-03-2018 IPR025915 Phage protein (N4 Gp49/phage Sf6 gene 66) family AM354_RS20830 2a4f3e566e08775ff20d127393d5089e 151 Pfam PF10772 Protein of unknown function (DUF2597) 9 141 1.2E-60 T 29-03-2018 IPR019708 Bacteriophage HP1, Orf24 AM354_RS20435 dc548731874447766913e4b3678de80b 115 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 5 105 2.9E-14 T 29-03-2018 IPR008407 Branched-chain amino acid transport, AzlD AM354_RS22195 10b101447464c71e412e252683d61e62 126 Pfam PF10828 Protein of unknown function (DUF2570) 9 111 1.5E-31 T 29-03-2018 IPR022538 Protein of unknown function DUF2570 AM354_RS26040 4544071dd17bd3b91091918538e2e7d8 187 Pfam PF07273 Protein of unknown function (DUF1439) 29 179 2.6E-58 T 29-03-2018 IPR010835 Protein of unknown function DUF1439 AM354_RS19685 88cd73dcba25f8218a740e182c703a08 189 Pfam PF03729 Short repeat of unknown function (DUF308) 26 97 2.1E-12 T 29-03-2018 IPR005325 Protein of unknown function DUF308, membrane AM354_RS19685 88cd73dcba25f8218a740e182c703a08 189 Pfam PF03729 Short repeat of unknown function (DUF308) 84 153 6.1E-9 T 29-03-2018 IPR005325 Protein of unknown function DUF308, membrane AM354_RS16380 747d569f7553de1c206a9374a5d19258 478 Pfam PF14052 Capsule assembly protein Wzi 88 465 1.4E-110 T 29-03-2018 IPR026950 Capsule assembly protein Wzi AM354_RS08605 96edd6d462555ddcf5309ca67650b48c 289 Pfam PF11392 Protein of unknown function (DUF2877) 160 264 7.5E-24 T 29-03-2018 IPR021530 Protein of unknown function DUF2877 AM354_RS14390 1f3d3e97097c56dad61499cf49ffa4b8 413 Pfam PF04932 O-Antigen ligase 189 346 2.5E-9 T 29-03-2018 IPR007016 O-antigen ligase-related AM354_RS05630 97cf0c13dd0a54dfa7a46e4d743ee62d 408 Pfam PF06224 Winged helix DNA-binding domain 38 382 7.8E-90 T 29-03-2018 IPR009351 Protein of unknown function DUF1006 AM354_RS15685 85426641333a7754e0c97896beae46c9 179 Pfam PF05137 Fimbrial assembly protein (PilN) 100 173 2.8E-10 T 29-03-2018 IPR007813 Fimbrial assembly PilN AM354_RS16150 4d6b15bc8ed81139a1c7e45283cd32b3 68 Pfam PF03889 Domain of unknown function 9 46 3.4E-23 T 29-03-2018 IPR005589 Protein of unknown function DUF331 AM354_RS20905 0655fad72f370c60187f39e42e956073 350 Pfam PF11185 Protein of unknown function (DUF2971) 150 252 1.0E-5 T 29-03-2018 IPR021352 Protein of unknown function DUF2971