        ravA NONE
        viaA   13927 ..   13941 +  -5.6  -3.63627   ATCATAATCCGGCGC               CCGCAC ATC GTGCGA               TTTACCGTGTGACAG  57 383
        asnC NONE
        mioC   15976 ..   15996 +  -4.1  -4.32402   GAGATCTAATAAAGA            GATCTTT AAATAAA AAAGATC            TTCTTTTAATTACCG  64 275
        mnmG   18088 ..   18106 +  -3.1  -2.71364   AGTCGCCTCATTGCG             CCAGC TAACCATCC GCTGG             TCGTTCAGCGCCTGC  41 117
        rsmG   18747 ..   18761 +  -8.6  -4.25104   CTGGTGATTCTTAAG               GCAAAC TGA GTTTGC               TTTTGATCAAACAAG  76 17
        atpI NONE
        atpB NONE
        atpE NONE
        atpF NONE
        atpH NONE
        atpA NONE
        atpG   24403 ..   24416 +  -3.1  -2.77236   TCACCGAGATCGTTT               CG-GGA GCC TCCGCG               GTTTAAGCTAGGTTT  41 6
        atpD NONE
        atpC   26310 ..   26326 +  -7.9  -6.28631   CCCAACTTTAAGAAA              GCGGCCT ATA GGGTCGC              TTTTTTTTTACTTTA 100 58
        glmU   28059 ..   28073 +  -8.5  -3.35371   TCAAGGCATCGAAAG               CGCCC ATGAA GGGCG               TTCATTAGGAATATA  65 143
        glmS   29946 ..   29963 +  -9.8   -5.1675   AGGTAAACTGCAAAA             GCCGGC CTTAGC GCCGGC              TTTTTTCATGAGTGA 100 49
        pstS   31302 ..   31334 +  -3.3  -3.63515   GCGCTGTACTAACAA     C-G-CAGGGGCGCGG GTTCG CCGCGCCCCACACAG     TTCTTCAGGCTCCGA  49 29
        pstC NONE
        pstA NONE
        pstB NONE
        phoU   34835 ..   34852 + -14.1    -4.254   GTAATATCCTTCCAA             GGCGCGG TTTC CCGCGCC              TTTATTCCATCTTAA 100 51
HAP49_RS00165   35845 ..   35872 + -11.2  -2.59431   CGGTGAGATCGGTAC        GGAGGGGCGCAG CTTG CTGCGCCCCTGA         TGCATTCTGCAAGAC  70 53
HAP49_RS00170 NONE
HAP49_RS00175   37719 ..   37751 +  -4.6  -2.79183   TGCAGACGGGCACCG      TCACCTGCGCCAGC AGCTC GCGGGCGCCGGCAA      TCTGCTGCAGCTCGC  44 390
HAP49_RS00190   40512 ..   40523 +  -5.8  -4.07885   TCGCTGTAATTTGAC                CAGC GGAA GCTG                 TTTTCCGACAGCATC  65 497
        dnaA   49652 ..   49667 +  -4.8  -3.02946   AATCAGAACATTATC              TTCATA GCGC TATGAA               ATTTATCGTTGAACG  48 19
        dnaN NONE
        recF NONE
        gyrB   54348 ..   54371 + -14.6  -5.82388   TAATGGCTGTGAAAA          TCCGCGCCGGG CGA CCC-GCGCGGA          TTTTTTTTGGCCTTT 100 46
        yidA   55274 ..   55291 + -14.1  -4.13654   AACGCCTGAGAAAAC             GGGGCGC AGCG GCGCCCC              TTTATACTTTCGCCA 100 32
HAP49_RS00275 NONE
HAP49_RS00280   59061 ..   59075 +  -4.2  -4.10657   ATTCTGCTGCTCGCT               GCGC AGGATAC GCGC               TTTTGGCGAGTCTGC  63 125
        ibpA NONE
        ibpB   60625 ..   60652 + -21.4  -3.26449   ACGGTCATCATCATG        CGGGGGAGATCC AAAC GGATCTCCCCCG         TTGCGTTATGTGGCG 100 52
HAP49_RS00300   62627 ..   62637 +  -2.4  -4.57569   GGCCCGGCACCATCA                 GCAC GCC GCGC                 TTTTTCAGGCGCTGA  68 228
HAP49_RS00315   66474 ..   66490 + -13.7  -4.09739   ACACGTCCAACCCGG              CGGCGTG GAT CACGCCG              TTTTGCAGCGCTTCG  90 233
HAP49_RS00360   75857 ..   75871 +  -3.5  -4.66609   GTTTATGTATAACGT              CG-GCG TCAG CGCGCG               TTTTTGAATGGGGTG  68 4
        glyQ NONE
        glyS   79662 ..   79677 + -11.8  -5.67283   TCTGTGCTGTGAAAA              GGCGCC TGCG GGCGCC               TTTTTTATTTCCGTT 100 46
HAP49_RS00375   80688 ..   80708 + -18.3  -4.87803   CCCGCGCACGAGAGA            CAGGCCGGC ATT GCCGGCCTG            TTTTATTTCCCCCTC 100 45
HAP49_RS00380 NONE
HAP49_RS00385 NONE
HAP49_RS00390   85268 ..   85290 +  -9.1  -3.38046   ACAGCGCGCCGCTCA           GCAGGCTCA TCGGC TGCGCCTGC           TCTTTGGCGTCCGGC  63 318
HAP49_RS00400   87175 ..   87199 +  -2.6  -3.39068   CTGCCGCCCGGCATT          GCGCAGGACG GGTAA CGGCGCGCGC          CTTTTGTTACAATGC  46 11
HAP49_RS00405   88118 ..   88166 +  -8.9  -4.60924   CCGGTAGCGGGATCG C-GTCGGCGGTGCCCGC-CAGCGT TTTC AC-CTGCGCCAGCGCCGCCGACAG TTTTTCCAGCATTTG  86 518
HAP49_RS00420   89989 ..   90014 +  -8.1  -4.07568   GTGGTCCAGTTCTCT         TCCGCTGCGGC GTTG GCGGCCGCGGG          TTTTACGGCCGGCGC  74 80
        fdnG NONE
        fdxH NONE
        fdoI NONE
        fdhE   98579 ..   98617 +  -5.1  -3.53343   CTGTTCCCGGCGGAG  TAAC-CGCCCGGCCCCGT TCGC GCGGGGCCGGATGAGCAA   TTTCAGAACGGGCTT  56 23
HAP49_RS00455 NONE
HAP49_RS00460  100000 ..  100015 + -11.8   -4.3467   TGAGCTTTCCTTTCT              CCCCGC CGCG GCGGGG               TTTTGCTATGCCGAT  95 38
        selA NONE
        selB  103316 ..  103333 + -10.5  -2.71712   ATAAATCTGACGGCG             GCCCGGC TGAC GTCGGGC              GTTTGGGCGGCGAGA  69 37
HAP49_RS00480  104968 ..  104992 + -17.1  -4.47328   AAGCCGCATAAAAAA          CGCCGGTCGGG AAA CCGGACCGGCG          TTTTATCGTCGCGTT 100 40
HAP49_RS00490  107722 ..  107750 + -14.5  -2.73364   CGGCGGCCATCACGT        CCTGCGCGCGGTG CAC CGCCGGGTGCAGG        TGGTTGCGGTAGCGC  75 283
HAP49_RS00515  112712 ..  112731 +  -5.6  -2.92896   TCCATCCGCACAGCT            ATCGGCGG GCGT TCGCCGAA             TAATATTTCTGTCAT  49 3
HAP49_RS00520  114159 ..  114186 +  -9.7  -2.76261   CCTGAAGTAGCTCCC        CCCGGCCGCCG AATCGC CGGCGGCCGCC         ATTTCCCGCTTAGCG  65 31
HAP49_RS00525  114789 ..  114807 +  -4.5  -4.15565   GCGATAAAAAAGTAA             GTCACGC CCCAC GCCTGAC             TTTTCCAATAATACA  63 468
HAP49_RS00540 NONE
HAP49_RS00545 NONE
HAP49_RS00550 NONE
HAP49_RS00555 NONE
HAP49_RS00560  121537 ..  121577 +    -9  -4.08216   TCATCAGCCTGCTGG C-GCTGCTCTCCCG-GCC GGCGTGG GGCGCGGGAGGGCTGCCG TTTTCGCCGGCCTGC  77 206
HAP49_RS00570  122560 ..  122577 + -14.1  -3.30619   CACAGAAAAAAATAA             CGCCGGC TTGA GCCGGCG              TTGTCGGCGATCGTT  86 15
HAP49_RS00580  125671 ..  125685 +    -7  -3.34398   CTGGCGAACACCACC               CGGCGG CAG CCGGCG               TCTTTCGCCGCGCGG  55 474
        bglF NONE
        ascB  129956 ..  129978 + -11.9  -3.08738   CGGCGCTAACCCTTC           AGCCCGGCG GCAAG CGCCGGGCA           TTAACTAACCTTATT  77 32
HAP49_RS00600  131737 ..  131765 +    -8  -4.62069   TTTTGGCCTGCGGCG       ACGCG-CCGGCGC TGTG GCGCCGATCGCGG        TTTTTACGCTCGAAG  83 292
HAP49_RS00610  132615 ..  132626 +  -4.4  -2.87051   AAGCTGCGCGGCAGC                CTGA TCGA TCAG                 ATTTGATCCTCCAGC  47 8
HAP49_RS00615  133244 ..  133262 + -10.3  -4.67982   GATATCTGGAAAAAA             TGGAGGG TTTAT CCCTCCA             TTTTCTTGCGTGCCC 100 51
        eptB  135148 ..  135172 +   -10  -2.90813   CTGTGATCCCTCCCG          CCGGGTGC CTGCCTTGC GCACCCGG          TAATTTCACCCAATA  67 35
        uhpA NONE
        uhpB NONE
HAP49_RS00635  138828 ..  138855 + -12.8  -3.36919   AACGCCTGAGTAAAA        TACGCTGCGC AACCCCCG GCGCAGCGTA         TTATGGCGCTTTTAT  82 32
HAP49_RS00640  139031 ..  139048 +  -9.9  -5.90981   CCACCATTCGAAAAA             CCTGCTT TTTA AAGCAGG              TTTTTTTTCGTCTGC 100 38
HAP49_RS00645  139196 ..  139213 +  -9.9  -6.30182   CCACCATTCGAAAAA             CCTGCTT TTTA AAGCAGG              TTTTTTTTTGTCTGC 100 38
HAP49_RS00650  141316 ..  141342 +  -9.4  -4.56597   CGGTTGCAGTGCGTT         GCCGGGGG ATATCCTTTCG CCCCCGGC         TTTTTCGCCGCCGAA  86 42
HAP49_RS00655  143550 ..  143568 + -10.3  -2.78935   GAATGGACTTGCAGG             GGCGCAA CAGGT TTGCGCC             TCTGCTGACCAGTCT  69 67
        dppB NONE
        dppC NONE
        dppD NONE
HAP49_RS00675  147622 ..  147640 +   -16   -5.5604   CATCGCTTAAATTCA             CGCCGGCA TCA TGCCGGCG             TTTTTTATTACTTAA 100 53
HAP49_RS00695 NONE
        yhjQ NONE
        bcsA NONE
        bcsB NONE
        bcsZ NONE
        bcsC  162120 ..  162143 +    -8  -5.63517   CTCAGCCCGGTTCGA          GGGGGCGGGT GAGA GTCAGCCCCC           TTTTTTGTTTCAGCC 100 196
        hmsP  164172 ..  164194 +  -8.3  -2.65532   AAGCCGAGTTTTGCC           GCGCGGCGC CGTGA GCGTCGCGA           TACCTTTCCGGTACT  58 12
HAP49_RS00730  165758 ..  165785 +   -17  -2.78992   TGATTTCGGCTGTAA        ATCACCGGCCGC AGCC GCGGCCGGTGAG         CTTCTTCCCCTGCCT  95 38
HAP49_RS00735  167742 ..  167767 +  -7.6  -4.53034   TGACGCCGCGCTTCA         GCTTGGCCAGC AGCTC GTTGGCC-AGC         TTTTCATTGTCTACC  81 259
         rep  170193 ..  170227 +    -9   -4.3534   CCAGGCGCAAAATGC     GGCACAGGCGCTGCGC AGT GCGCGGCGGCAGGGCG     TTTTGCTGGTTCAAC  83 270
        trxA  173437 ..  173451 +  -3.6  -3.37188   TTTTGGCAATCAAAC               GGTTTT GCA AAAATC               ATTTTTAAGGTACCT  50 235
         rho  174909 ..  174928 + -10.7  -4.87318   AAAAAATTCGCTGAA            CGCCACG CCTAGT CGTGGCG             TTTTTCGCTTTTGGC 100 47
        wecA NONE
        wzzE  177335 ..  177347 +  -6.2   -2.7185   CGGGTGTTGCCTTGG                CGCG TCGGC CGCG                TAGTTAAAAAATAAT  51 6
        wecB NONE
        wecC NONE
        rffG  180898 ..  180929 +  -7.8  -4.15006   TTGTCAGATTAATTT      AACGCCGCGTCGCT TTGC GGCGGTGCGGCGGG       TTTTGGAGTAAGTAT  74 29
        rfbA NONE
        rffC NONE
        rffA NONE
        wzxE NONE
HAP49_RS00815 NONE
        wzyE NONE
        rffM  188107 ..  188139 +  -7.7  -2.63102   AAGATGTAACCTCTC      ATCCGGGGTGGAA AGTGCTG TTCCGCTCCGGAC      TGCTGTACCAATAAT  55 32
HAP49_RS00830 NONE
HAP49_RS00835  190068 ..  190081 +  -2.3  -3.32997   CTCAGGTTCGAATCC               TGTCG GGCG CGCCA                TTAAGTTTGTGCGCA  44 12
HAP49_RS00840 NONE
HAP49_RS00845 NONE
HAP49_RS00850  190511 ..  190529 + -11.8  -5.90981   ACCACATTCGAAAAA             CCTGCTTT TTT AAAGCAGG             TTTTTTTTCGTCTGC 100 37
HAP49_RS00875  198241 ..  198268 +  -7.6  -3.05384   CAGCTGCATTGACGC        CGCAAGGGCTCGG TGG CCGAGCCCC-GCA        TTGCCTCAGGAAAAA  59 29
HAP49_RS00885 NONE
        dapF NONE
HAP49_RS00895 NONE
        xerC NONE
        yigB  202147 ..  202161 +  -9.2  -4.27584   ATTTCCAGTGAAAAA               CCCGTC ACC GGCGGG               TTTTCCCTTAACCAT  79 63
        uvrD  204362 ..  204383 + -14.5  -2.72463   CTAACGAGAGAGGCG           TTGCAGGGG CAAG CCCCTGCAA            TCGTTCACCATCAGT  82 37
        corA  206645 ..  206655 +  -4.6   -3.3761   GCATGCCGGTCTGCG                 CGTC GAT GGCG                 ATTTTCTTGCGCAGC  50 407
        pldA NONE
        recQ NONE
        rhtC  211315 ..  211336 + -11.5  -5.25803   CAGTGAAATGCCCAA           GGCCGAGCA GCGA TGCCCGGCC            TTTTTTGTCAGGCTT 100 45
        pldB NONE
        yigL  214159 ..  214183 +  -7.8  -3.93256   GGATGGTGAACGGAT         GCAC-CGCCAG CTTG CTGGCGTGCGC          TTCTTTCACCATGTC  68 227
        glpA NONE
        glpB  219782 ..  219807 +  -2.5  -3.55761   GCCGCGGAGGAGAAC         GC-ATGAGCCTG CAT CAGGATCACAGC         TTTGAAAGCTGCATC  47 20
        glpC  220991 ..  221008 + -14.1  -3.93236   TGGCATAAAGCGAAA             GGGCCGG CAAG CCGGCCC              TTTGTGGGATTACTG  93 33
        tusA  223305 ..  223330 + -16.1  -4.42464   CCTCCCCCAAATGAC         AACGGGCGCGG TATG CCGCGCCCGTG          TTTGTTTCAGGGCTT 100 67
HAP49_RS01015 NONE
HAP49_RS01020 NONE
HAP49_RS01030  229795 ..  229817 + -11.9  -3.36878   CTGGCAGGCACGTCC           GCCGCGGCG CTTTC CGCCTCGGC           TTCTACATAGATCCA  72 394
        ftsY  232099 ..  232109 +  -3.2  -2.72511   CCGAGAGGATTAATA                 CGGA TGA TTCG                 CTTTGAACAGGTCAG  41 28
        ftsE NONE
        ftsX  233932 ..  233945 +  -3.1   -4.4078   ATGTTAAGGTGTCCG               GCGTGT GGA AC-CGC               TTTTGCTTCAGCAAC  61 241
        rpoH  234916 ..  234931 + -11.8   -4.7497   AGATTCGATAAAAAA              GCCCGG CAAG CCGGGC               TTTTTAGTGCCTGAA 100 50
HAP49_RS01080  240216 ..  240238 + -14.1  -3.53012   CCCCGTCTCCCTTTA           CCCGCCGGT TCTCC GCCGGCGGG           TTTCGCAGCCAAGGG  89 97
        livH NONE
HAP49_RS01090 NONE
        livG NONE
        livF NONE
HAP49_RS01105  245145 ..  245160 +  -8.2  -3.12668   AGATGCAAGAAGCGG              TGGCGC GCCT GCGCCG               TTCGCTATAAGCCTC  62 0
        ugpB  246686 ..  246711 + -19.7  -3.02144   CAAATAACCCTGCGT         CGCGGGCCCGG CGGA CCGGGCTCGCG          TCTTCACGCCGATCC 100 34
        ugpA NONE
        ugpE NONE
HAP49_RS01125 NONE
        ugpQ NONE
HAP49_RS01135  251484 ..  251518 +  -3.4   -4.4078   GATCCATCTGCCGGT     TGTTCAACAAGCGCTG TTG CTGCGCCTGTTGGCTG     TTTTGGTTGAGAAGC  67 194
HAP49_RS01145  252770 ..  252780 +  -2.4  -3.04144   TAAAGGCTTCGGTCA                 CCGC CTG GCGC                 TGTTCGCCGTCGCGC  41 158
        metE  256030 ..  256045 + -11.8  -5.24129   ACTGGTGTGATGATT              GGGCGC TTCG GCGCCC               TTTTTTATGCGGGGG 100 78
         udp  258161 ..  258180 + -16.4  -4.74103   ATCGCCTCCCCTGAA            CGGGCCGC CGCC GCGGCCCG             TTTTTCCATTCGCGA 100 40
HAP49_RS01170  259075 ..  259095 +  -7.5  -2.64099   TCGCTGCGTGTTTAA            CCGGGGT TTAACTC GCCCCGG            CTTATCCTAGGCGGC  55 42
HAP49_RS01175  259648 ..  259664 + -10.1  -3.61988   TTCGGCATCAAGTGG              CTCAGCC AGT GGCTGGG              TTGATTTCTCGCTAA  74 5
        rmuC  261338 ..  261374 +    -8  -3.02461   CGCCGGGGAACCGGG   CTTCGTTTCG-CACGGC TGAG GCCGTGGCGAGGTGGGG    TATTCACCGGGCTTC  60 7
        ubiE NONE
HAP49_RS01190 NONE
        ubiB  264497 ..  264512 +    -4  -2.73364   CTGGCTTTAAAAGAC              CCTTTA AAAT TAGAGG               TAATTAAAATGGGCG  44 82
        tatA NONE
        tatB NONE
        tatC  266131 ..  266147 + -15.1  -4.54727   CATCTTGATTGCTAA              GCCGCCC ATT GGGCGGC              TTTTGCTTTGGAAAA 100 43
        tatD NONE
        hemB  268009 ..  268024 + -11.8  -4.29176   ATGAGCCAACAAAAA              GGCGCC TGAG GGCGCC               TTTTGCATTACATCT  95 48
        pepE NONE
        ubiD  271055 ..  271085 +  -3.9  -3.39936   CGCAATCTTCAGTGA      CAGGGAACCGACGT TATA GCGTCAGG-CCCTG       TTCTCAGCTTTGCAT  50 7
         fre  271846 ..  271868 + -14.8  -5.27938   GCGATGCGCAATGAA           CGGGGTGGCC GAG GGTCGCCCCG           TTTTTATTTGGGCGT 100 46
HAP49_RS01255  276847 ..  276858 +  -7.2  -3.08992   CGCGATGAGGTTGGT                GCGC CGGA GCGC                 TGTGTTAAGATGACT  59 81
        pepQ NONE
HAP49_RS01265 NONE
        trkH NONE
        hemG  280898 ..  280914 +  -5.7  -4.07568   GAAAAGTGACAAAAA              CGCGGGT TTG GCCAGCG              TTTTGCCGAAAAAAC  66 32
HAP49_RS01280 NONE
HAP49_RS01285  283043 ..  283078 + -12.2  -3.45839   TCTGACGATACACCA    TATCTTAAAGATGACT TCCG AGTCATGTTTAAGATA     TTGCTCTTTAACAAT  80 80
HAP49_RS01290  286140 ..  286150 +  -6.8  -4.58685   GGCTTAACCTTACAA                 CACC GAA GGTG                 TTTTTAGAGAGATTT  76 12
         rrf  286367 ..  286388 + -14.5  -4.81551   CAAACAAAGCCGAAA           GCCCTGAAC TGAC GTTCAGGGC            TTTTTGCTATGCGTA 100 43
        murB NONE
        birA  288801 ..  288813 +  -2.6  -4.37527   CGCACGCTTTCAACG                GCGT GGTTA GCGC                TTTTGGTCATTATCA  62 102
HAP49_RS01320 NONE
HAP49_RS01325  291078 ..  291090 +  -5.5  -3.06796   CCCCACCACCAAATC                TTGCC TTC GGCGA                TTAACTGAGATGCGA  51 30
HAP49_RS01330 NONE
HAP49_RS01335 NONE
HAP49_RS01340  291496 ..  291509 +  -4.5  -2.97838   AATGCTTGGTTGATG               TGGTG ATAC CACCG                ATTTATCCGTGTCTT  47 93
         tuf  292757 ..  292774 + -11.3   -4.8667   CGACACGCGGTAAAA             GGGCATC ATTT GATGCCC              TTTTTCTACGCTGTG 100 60
        secE NONE
        nusG  293955 ..  293983 + -17.6   -5.2853   TTGCCGCTTGTCAAA        GGCGCGAAATTG AACTA CAATTTCGCGCC        TTTTGTTTTTAGATG 100 67
        rplK NONE
        rplA  295413 ..  295423 +    -4  -5.24129   GGTGACAGAGCCTAA                 GAAA ATT TTTC                 TTTTTTATAAAAGAA  82 223
        rplJ  296043 ..  296056 +  -3.7  -3.70741   CGCGATCAGAAAGAA               GCGGC GTAA GCCAC                TCTTTCTTAGCCTTT  54 17
        rplL  296520 ..  296545 + -17.7  -4.64766   GTCTTTTAGGCTGAT         GGCTGGTGACT TTTT AGTCACCAGCC          TTTTTGCGCTGTAGG 100 65
        rpoB  300850 ..  300887 +  -9.9  -3.65046   CGAGTAATCGTCATG   CCGGC-TCAGGCTCCC CGCCTAA GGGAGCCTGAGGGTGG   TTGTTCAGGTCACAC  74 34
        rpoC  305233 ..  305250 + -10.5  -5.78622   CCATTGCCAGATAAA             CCGCTCC CTAG GGGGCGG              TTTTTTTTCGCCTCA 100 75
HAP49_RS01390 NONE
HAP49_RS01395 NONE
HAP49_RS01400  307833 ..  307867 +  -7.2   -2.8294   CGATGCCGTAGCGGC     TGGCGATCTTCTTCAA CAG TTCGAGAATATCGCCG     TCATTATCCAGGATC  53 322
        nudC NONE
        hemE NONE
         nfi  317912 ..  317924 +  -4.8  -3.60627   CAGCATCCGGAGGTG                TCGC CATGA GCGA                TTTCGGGTACACTGC  54 17
HAP49_RS01460  318700 ..  318713 +  -4.5  -2.72144   GTCAATCGGCATATC               CGTCG CACT CGATG                CTTTGCAAACGATAA  45 166
        hupA  319052 ..  319067 + -11.8  -4.95484   AAAAGATTAAACAGG              GGGGCG ATGG CGCCCC               TTTTGTTTACTCGTC 100 56
HAP49_RS01470  319734 ..  319752 + -11.6  -2.83894   ACCAGCTATAAAAAA             GGCCCCGC GCT GCGGAGCC             TCTGGTCATGATCAT  71 30
HAP49_RS01485 NONE
HAP49_RS01490 NONE
HAP49_RS01495  325164 ..  325201 +  -5.7  -4.49756   AGTCCGGTATTTCAA   TACTTCAGAGTATATTG GCGA CAGTATGCTGCGAAGTA    TTTTGCTCTTTAACA  73 44
HAP49_RS01500  328265 ..  328275 +  -6.8  -4.58685   GGCTTAACCTTACAA                 CACC GAA GGTG                 TTTTTAGAGAGATTT  76 12
         rrf  328492 ..  328513 + -14.5  -4.81551   CAAATAAAGCCGAAA           GCCCTGAAC TGAC GTTCAGGGC            TTTTTGCTGTGCGTA 100 43
        gltP  334907 ..  334941 + -13.7  -4.91459   AGTATCGCCGACGTT    GAAAACGCCCCAGGCA GTTG TGCC-GGGGCGTTTTG     TTTTTATGGCTCTTC 100 47
HAP49_RS01530  336791 ..  336817 + -19.4  -3.79747   CGTTCGGCGGCGGGG         CCGCGCAGGCGT TCA ACGCCGGCGCGG         TTTGCTGGTGGCTCA 100 314
HAP49_RS01545  343959 ..  343978 +   -15  -4.41548   ACGCTATCGCGGTGA            CGGGGGAC GCAT GTCCCCCG             TTTTGTGCGCTATCC 100 40
HAP49_RS01550 NONE
HAP49_RS01555  348235 ..  348251 + -13.7  -4.07975   GCAAAGGTAAAAAAA              GGGGTGC TGA GCACCCC              TTTGTCGTTGGGTTA  93 48
         fes NONE
HAP49_RS01570 NONE
HAP49_RS01575  356402 ..  356439 + -19.1  -4.18488   ATGACGCCCTCATCC   CGCCGCCAGGCACGGGG ATTA TCCCGCGTTTGGCGGCG    TTTCTTGCGGTCGCT 100 40
        entS  357981 ..  357995 +  -2.2  -3.30441   CGGAATTAACTCAAA               TGATAA TCA TTATTA               TATTGGTTATCACTT  44 187
HAP49_RS01585 NONE
        entE NONE
HAP49_RS01595  361755 ..  361774 + -10.6  -3.23047   TTAATCACGAGCAGA            GGGCGGCC GTTC GGCCACCC             TGTTGGCTTTATAAG  73 43
HAP49_RS01600  362891 ..  362916 + -14.7  -5.76949   TAAGTATCCCTCGAA         CAGGCGAAGCG GCGA CGCTCCGCCTG          TTTTTTTTCGCCGTG 100 53
HAP49_RS01605  363623 ..  363639 + -11.5  -5.77988   TTCAAACAGAATTAG              CCCGCCG TTA TGGCGGG              TTTTTTTATATATAT 100 46
HAP49_RS01610 NONE
HAP49_RS01615  365262 ..  365286 +  -3.5  -3.86822   TGCTTTTTTCTCGTG          GGCAGAAGGTT AAC AGCTCTTTGCC          TTTCTGCGAAGCTTC  56 153
HAP49_RS01625  366965 ..  366986 + -12.3  -4.08216   TTTTTCCTAAATCCA           GCATGCGGG CTTG CTCGCATGC            TTTTCAGGAGCATCC  90 50
HAP49_RS01630 NONE
HAP49_RS01635 NONE
HAP49_RS01640 NONE
HAP49_RS01645 NONE
HAP49_RS01650 NONE
HAP49_RS01655  372740 ..  372754 +  -2.8  -3.05022   GGCTGTTAAATAGTA               TCGG TCAAACT CCGA               TCTATATATAGCGAG  44 74
HAP49_RS01660 NONE
HAP49_RS01665  374155 ..  374174 +  -2.2  -4.97405   ATGCAACAGCGACCT            TTATTCTT GGAT ATGAATAA             TTTATTTTTATGACT  70 6
HAP49_RS01670  375123 ..  375139 +  -9.4  -5.48825   GCTATTTATCGATGA              GCAGGG GTTAG CCCTGC              TTTTTTTGGCTCATA 100 219
HAP49_RS01675  375742 ..  375763 +   -13  -5.28166   AGTGTATGTAGTCAA           GCCCGCCA CGACTA TGGCGGGC            TTTTTCTTCGTTTTG 100 43
HAP49_RS01685  378527 ..  378563 + -10.8  -4.18018   CAGGTGTTCCGTCAC   CGCGCCGGCCGCCGTTT GCGT GAACTGCG-CCAGCGCG    TTTTGCATGCCGCGG  84 260
HAP49_RS01695  380513 ..  380535 +   -12  -4.10657   ACCCGTCTGAATGCC           GCCCTGCG CCGTTTC CGCAGGGC           TTTTCGAACCTGTGC  90 31
HAP49_RS01700 NONE
HAP49_RS01705 NONE
HAP49_RS01710  382511 ..  382547 +   -21  -3.50893   AGACGATTTGAACAA    CAACGCTGAACCGCCG TTTAC CGCCGGTTCAGCGTTG    TTATGCTATATCCTT 100 59
HAP49_RS01715  383036 ..  383050 +  -8.6   -3.5882   CGAACCAAGGACACA               GGGATT TTC AATCCC               TTTAAAACTGCTGTG  67 42
HAP49_RS01720  385529 ..  385539 +  -5.4  -4.64766   AGCATCCCGGCTTTA                 GTTC CAT GAAC                 TTTTTGAGATATCCG  73 217
HAP49_RS01740  391269 ..  391288 +  -2.1  -4.12599   GTATGTTGTTAAAAT            TCCCC GATTTATTAA GGGGA             TTTTCCCACCTTATT  57 480
        fxsA  398439 ..  398454 +  -8.2  -4.84527   CGATCGTTAAGCAAA              CGCGGT CCAG GCCGCG               TTTTTCATCTCTGCG  87 31
HAP49_RS01780  398911 ..  398922 +  -3.6  -4.27519   CTGGCAATTGTTGAA                GCGT AATT GCGC                 TTTATCTTCTGAACT  61 20
        groL  400637 ..  400656 +   -15  -5.80817   CTTGTGTGCTGAGAA            CCCCGGTC AAAC GACCGGGG             TTTTTTTATCTTAAA 100 55
HAP49_RS01790  402472 ..  402482 +  -8.2  -2.80796   TGATGATATTTTTGC                 CGCC TGG GGCG                 ATTTAGCTGGTAAAC  59 58
HAP49_RS01795  403124 ..  403145 + -13.1  -4.43477   ACAGAGATAAAAAAA           GAGGAATGC CACG GCATTCCTC            TTTTCGTTCCATCAG 100 62
         efp  404823 ..  404847 + -14.4  -4.40804   AAGTAAGTTTCAAAA          CAGAGGAACC CCCGC GGTTCCTCTG          TTTTATCCCATCCTC 100 35
HAP49_RS01810  405086 ..  405103 +  -3.5  -3.43042   TCCGTCAATTTTGAC             TAC-GCTT AGA AAGCCGTA             CTTTTTCATCAACGA  50 96
HAP49_RS01815  405279 ..  405312 +  -4.3  -4.09108   ATAATCCGCATTCCA     CCCGGCGGCGTTCCG GCTG CGGAGAGCCGCCACA      TTTCTATCCCTTGCC  61 37
        sugE  406094 ..  406114 +  -6.8  -2.78816   GATTGATGACTTTCA           GTCCGC-CG TCGG CGCGCGGGC            TGTAGTGGGCGGTCA  49 342
        epmA  411083 ..  411102 +   -15  -5.24129   GGAAAAAAGCAAAAA            GGGTCGGC ATTT GCCGACCC             TTTTTTATCGCGAGA 100 53
         orn  417344 ..  417356 +  -9.1   -2.8372   TTTAGCCGCTTAATT                CGCCA ATC TGGCG                CTTTAATCGGCAATC  62 76
HAP49_RS01875 NONE
HAP49_RS01880  417738 ..  417752 +  -5.7  -2.87564   AGTGTTTGGTGACCG               GATGC CGAAA GCATC               TCTATGCGGGAATAG  52 60
HAP49_RS01885  417871 ..  417881 +  -6.8  -4.90296   AAGTCCAACGCCTTA                 TCCG GCG CGGA                 TTTTTGTCCCGTTTT  82 63
         nnr NONE
        tsaE NONE
        amiB NONE
        mutL NONE
        miaA  425986 ..  425999 +  -4.5  -3.33696   ACGTCGTTTATTTTA               GAGCC GACA GGTTC                TTAGTTACAAACAAC  50 89
         hfq  426382 ..  426394 +  -9.1  -4.03234   GACGGGGAGCATAAG                CAGCC GCG GGCTG                TTTATGTCCCCCAAA  77 62
        hflX NONE
        hflK NONE
        hflC  430077 ..  430096 + -12.8   -4.2687   AGGCAATCTGATCGA            GGGCCCGT TTAC GCGGGCCC             TTTCTCGTTTTTGGG 100 48
HAP49_RS01940  430301 ..  430313 +  -2.6  -3.63627   TACTACATGTTGAGC                GGCC GCACG GGTC                TTTAAAGTCTAGCCC  47 8
HAP49_RS01945  431736 ..  431758 + -13.5   -4.9218   CTTTGCGGCATTAAA           CAAACCGGG CGCGT CCCGGTTTG           TTTTTATCCTGACTC 100 46
        nsrR NONE
         rnr  434924 ..  434955 +    -2  -3.53444   CCTGCCGCACATCGT      TACCATCGGCCGGT TATC GCCGGCCGCACGAA       TTTAAAAGAGCATCA  47 41
        rlmB  435711 ..  435729 + -13.8  -3.35639   GGCTGATTCTCCTGA             CGGGGGCG CAG TGCCCCCG             TTAATTCCCCCTCTT  84 35
HAP49_RS01965  437453 ..  437476 +  -2.2  -4.86621   GGCGGTTAGGGAAAA          GGGTGGCGCC CGGC GGCGAAAACC           TTTTTAATTCAGCCT  68 32
HAP49_RS01970  437929 ..  437953 + -14.9  -2.75992   GTATAAGATGGCCGA          GGCGCGCCAGC CAA GCGGGTGCGCC          TGCTCTTCCATCCGC  84 43
        yjfP  439574 ..  439591 +  -2.1  -3.85698   GCCGAATGAAGGGGA             GAATGTCA GCG TGA-ATTC             TTTCTGGGGCAGCAA  53 105
HAP49_RS01990  440155 ..  440173 +    -3  -4.26903   ATGCGATAAGAGCTT             GCGCCG CGTTGGT CGGCGA             TTTTACTGACCTGGC  64 204
        rpsF NONE
        priB NONE
        rpsR NONE
        rplI  442271 ..  442289 + -11.7  -4.73108   GTTAACCGGTTAAAA             CGCCAGC CTCGC GCTGGCG             TTTTGCTTTTCTGCG 100 52
HAP49_RS02020  443208 ..  443229 +  -2.9   -4.5442   TGCCAGACTTTAATC           AGCAGCG CTTTGACC CGCTGCA            TTTTGTCGTTGGCCG  69 525
HAP49_RS02030  444294 ..  444312 + -13.1  -4.30995   ACCGAGGATTGTTCT             GGGCGCC TTCGT GGCGCCC             TTATTTTATGCGCCG 100 45
        cysQ  447580 ..  447594 +  -6.4  -3.73953   GGGCATCGTCGGTGT               TGACGA TTG TCGTCG               TTTGGTAACGATCGT  62 284
HAP49_RS02050  448446 ..  448464 + -17.4  -3.08388   AGCGGTAAAAAAAAT             GCGGCCCC GAT GGGGCCGC             TGATGTTTTTGTCTT 100 54
HAP49_RS02065 NONE
HAP49_RS02070 NONE
HAP49_RS02075  456837 ..  456855 + -14.6  -5.14563   TCAGTAATAAAAAAA             CACCGCTC AAT GAGCGGTG             TTTTTTCATCGGACG 100 34
HAP49_RS02085  459347 ..  459368 +  -9.4  -2.62616   ACGAAGAATGGCGCG           CGCTGGTG CAGTTT CACCGGCG            TGATATCCAGAATGC  56 147
         mpl  461852 ..  461867 + -11.8   -5.0133   ATAAGCCAACCTAAG              GGCCGC ATTC GCGGCC               TTTTTTACGCCCATA 100 53
         mdh  464974 ..  464995 +   -13  -5.86061   GTCAGCCGATAAACG           CCGCCGGA CGCTGT TCCGGCGG            TTTTTTTTGCTCCGC 100 53
HAP49_RS02125  466299 ..  466322 +  -4.5   -4.3586   TCGCCGACGATTGCG          CCGCCGCTTC AAACA GACG-GGCGG          TTTTGCTGTAGATCA  66 513
        rplU NONE
        rpmA  467719 ..  467740 + -15.9  -4.84529   ACGAAATAGATGTAA           GCCCCGCAA TTCG TTGCGGGGC            TTTTTACATTTATGG 100 54
HAP49_RS02145 NONE
        cgtA  469969 ..  469989 + -14.7  -4.08557   TAATTCGGTGATAAA            GGGCTCAGC AAC GCTGGGCCC            TTATTATTTGAGCGC 100 38
        greA  473939 ..  473952 +  -9.5  -4.70583   TAAAGATAGGAAAAA               GGCCG CAAG CGGCC                TTTTATCTTGGTCAG 100 76
        rlmE NONE
        ftsH  477080 ..  477095 + -11.8  -6.06723   TGTAATAACATCAAA              CCCCGG TACG CCGGGG               TTTTTTTTTGCCCGG 100 50
        folP NONE
        glmM  479337 ..  479375 +  -4.5  -3.75617   GTTAAAACAGACAGT  TAGCC-G-CCGGGCTTGGC ATC GCTGAGCCCGAACAGGCGA  TTGTTGGCGTTTTTT  56 36
        secG NONE
HAP49_RS02205  480054 ..  480067 +  -3.1   -3.3197   AATCCCAGAGATAAC               TTGCA ATTT TGCGA                TTATCGGCGTAGTAT  46 41
HAP49_RS02210  480311 ..  480326 + -10.4  -5.72254   TCCAGTTGCATAAAG              CCCCGA TTTT TCGGGG               TTTTTTGTTATTTGG 100 161
        rimP NONE
        nusA NONE
        infB  485114 ..  485137 + -10.9   -4.0371   TGCTTATATCTGTTT          ACGGGGGGC CTTTGT GCCCCCCGA           TTTGTCTGGAGAATC  84 53
        rbfA NONE
        truB  486543 ..  486567 +    -5  -2.65656   CGCCTTGCGATCGCA          CTGCGCTA AGAGTAGAA TGGCGCAG          CTTATGCATTGGGTT  47 57
        rpsO  486923 ..  486948 + -14.8  -3.29144   TAGCAAGTTTCAGTG         GAAAGGGGCC TATTTT GGCCCCTTTC          TTCTAGGAAGCATAA  90 43
         pnp  489334 ..  489352 + -12.4  -4.07568   GGGCTGTTCGTATCG             CGCGGGTA GGA TGCCCGCG             TTTTAGCAAACGGAG  90 80
        nlpI  490338 ..  490361 +    -3  -5.61689   TGGTTTTTAACCAAA          GTTATCGCCT TAAC GGGCGAGGGC           TTTTTTGTTCGTTTT  86 71
        yrbN NONE
HAP49_RS02260  492440 ..  492455 + -10.4  -5.64274   AAGCGCTCTGAAAAA              CCAGCC TGCG GGCTGG               TTTTTTTATGCCTGA 100 64
        yedE NONE
        yedF  493998 ..  494032 + -14.2  -4.62471   CCTGATCCAGCGTTA     ACGCCAAGGCGGTGGG GTT CCCACCGCCTTTTCGC     TTTTTAGCCCTTCAC 100 25
HAP49_RS02280 NONE
HAP49_RS02285 NONE
HAP49_RS02290  498537 ..  498554 +  -9.8  -4.61162   TAGGGGATAAATAAA             GGCGCC ATTTTC GGCGCC              TTTATTATTTCGTAT 100 38
HAP49_RS02295  499327 ..  499352 + -20.5  -2.86164   CTTGATAAATAAACA         GAGCCGGCAGC GCCC GCTGCCGGCTC          TGTCCTCGTTAAGAC 100 299
HAP49_RS02310 NONE
HAP49_RS02315  502549 ..  502575 + -12.2  -5.30339   CAAATACGCCAACGA         CAGCGGCGGGTG ATT CACCAGCCGCTC         TTTTTGTATTTTGCT 100 51
HAP49_RS02345  508780 ..  508800 +  -2.4  -3.13403   TATTGATTACAACGG            GAGATCGC ATGGC GCGAGCAC            TGTTAGTCGGCGCAA  42 48
HAP49_RS02350  509446 ..  509460 +    -7  -3.21099   GTCGAACGCCAGCTC               CAGCCC GGC GGGCAG               TTCGTGGTCCAGCAG  53 51
HAP49_RS02410  518963 ..  518978 +  -3.2  -3.26545   GGGAATGGGGTTGGT              GTAACG GATT CGTGAC               TTGATGCTATCTCAA  46 22
HAP49_RS02415  519233 ..  519256 +  -8.9  -2.89874   CTAGGGGCGCTGTAG          GTCGGCTTT AAGCGA GAAGCCGAC           ATTTACATATTTGTT  63 63
HAP49_RS02425  522576 ..  522590 +    -7  -2.91274   AGAGCGACAGCCCCT               GGCGCG GCA CGCGCG               TATCGTTCAGATCGG  50 407
HAP49_RS02445  527221 ..  527233 + -10.5  -3.26471   GTCGAGGTCGGCCAG                CGCCG CTT CGGCG                TTGATCTGCGGGTAG  66 375
        mgtA  534269 ..  534298 + -14.4  -2.79796   GGCTGGCAATAACCC       GTTCGCCCCCTCC GGCCG GGAGGGGGC-AAC       TGTGATCCCGTCCGC  82 29
HAP49_RS02470  537199 ..  537213 +  -7.8  -3.69902   GTCGTAGTGCAGTAC               CCGGTC GAT GATCGG               TTTGCCGTATTTGCT  65 301
        rraB NONE
HAP49_RS02525  547847 ..  547866 +  -6.3  -3.53811   CAGCAGATCTTTGAT            CAGCGGC TTCAGC GCCGCGG             TTTGCAGGAAATCCA  59 329
        lptF NONE
        lptG  557648 ..  557669 + -15.1  -5.28176   GCGGTAGTGAAGAAA           GGCGTGGCC GCGG GGCCGCGCC            TTTTTTGTGGGTGCG 100 49
HAP49_RS02565  558729 ..  558741 +  -2.7  -3.57615   GTAAGGGACTGTACT                TTAGT CTA ACTAG                TTTCGCACCTCTTGA  49 275
HAP49_RS02570  559666 ..  559679 +  -8.1  -5.64274   CGCGCGAACAAGAAG               CCACC GAGA GGTGG                TTTTTTTGTACCTGG 100 49
HAP49_RS02575  560601 ..  560614 +  -3.8   -3.0701   CTGGCGTTGGAGGCA               GGGA AATGTG TCCC                TTACATCGACGTTAT  46 244
HAP49_RS02580  562627 ..  562645 +  -3.2   -4.7173   AAGAAGTATATCATT             TACCTT TTCAGTC AAGGTA             TTTTTAACTATGCTA  73 503
HAP49_RS02600 NONE
HAP49_RS02605  567690 ..  567714 +  -7.2  -4.26076   GTCGTGCGCGCCCAG         GCCGTT-TTCC ACCA GGAACAGCGGC          TTTTGGTAGCGGTCG  76 344
HAP49_RS02620  572031 ..  572081 + -25.9  -3.14132   ACACGACGGTTGCGT GCCGACCTAAAACCAACAGAGCTGC GAT GCAGCTCTGTTGGTTTTAGG--GGC TTGCTCGCGGCGGCG 100 476
        rffG  573268 ..  573280 +  -2.6  -3.29973   ATGCCGGCGAGCGTC                TGGG GTTGA CCCG                TTAATCGATTTTTAA  44 9
        rfbA  574180 ..  574190 +  -2.4  -3.53012   GGAAAAATAACCCCG                 GCCC GCC GTGC                 TTTGAACACCCGGAG  47 31
HAP49_RS02635  575272 ..  575286 +  -3.6  -2.52516   ACCTTACCGCGCAGT               TAAAGG CCG TCTTTA               CTTCCTGATGCCACA  42 3
        rffA NONE
HAP49_RS02645  577880 ..  577910 + -14.1  -4.18763   AAACGATAACGCTTT      CGGTCAGGCAACCCG TTG CGGGTTGCC-G-CCG      TTTTCCCCATTTCTT 100 32
        sfnG  583182 ..  583196 +  -2.8  -4.38712   GCGCGCTGATGTCGA               TCCC CTGCGTC GGGA               TTTTCTGCAGGTGCA  64 134
HAP49_RS02715  593744 ..  593756 +  -4.9  -3.33589   TCTTTTATGTAAGAC                TCAAT ATA ATTGA                TCATTTTTATACGTT  50 431
HAP49_RS02735 NONE
HAP49_RS02740 NONE
HAP49_RS02745 NONE
HAP49_RS02750 NONE
HAP49_RS02755 NONE
HAP49_RS02760  602076 ..  602096 + -14.7  -3.02371   TAGTGAGATTTTCCC            CGGAGCGCG CAA TGCGCTCCG            TCGTTATTTCCCGCC  86 38
HAP49_RS02765  603586 ..  603603 + -14.1  -4.63527   TTTCACCTGCTCCAA             GCCGGCG CCTG CGCCGGC              TTTTTCACATGGTAA 100 42
HAP49_RS02775 NONE
HAP49_RS02780  605800 ..  605820 + -15.4  -3.28924   GGGAAGAAGCGTTGG            CCGCCGCC AGCTA GGCGGCGG            TTCTCGCAAAAAATC  90 12
HAP49_RS02785  606994 ..  607009 + -10.4  -5.75599   GTGAACGATAAAAAA              GACGCC TGCG GGCGTC               TTTTTTTATGCTTTC 100 56
HAP49_RS02795 NONE
HAP49_RS02800 NONE
HAP49_RS02805  609922 ..  609939 +  -9.8  -4.26076   GGAAATGAAACCGCA             GGCGGG GAAAAG CCCGCC              TTTTCATGGAAATAC  83 33
         idi  610558 ..  610578 +  -5.4  -3.47955   CTGTAATAAAATAAA            TAGCCACC GCAAG GGTGACTA            TTCATTCATGTTTAC  54 27
HAP49_RS02820 NONE
HAP49_RS02825  612541 ..  612553 +  -3.4  -2.60456   TTCAATTATCAGGCG                CCTT AGCGC AAGG                GTTAATCGTTTGATT  40 20
HAP49_RS02830  614811 ..  614823 +  -3.3  -4.19817   CACCTTCAGCGTCTC                GCTGG AAG CCACC                TTTTAACTGAATGCC  59 7
HAP49_RS02835 NONE
HAP49_RS02840  616789 ..  616799 +  -8.2  -3.90744   CAGGGCGCGTTAACC                 CGCG CCC CGCG                 TTGTTTACCGCCGCC  72 45
HAP49_RS02865  623690 ..  623726 +  -2.9  -3.71924   AGTGCGGGTACAGGC   GCGCGGCCAGCTCG-GC CATCA GCGCGCGCTG-CTGCGG   TTGTTCGCTGCTTTC  54 372
HAP49_RS02875 NONE
HAP49_RS02880 NONE
HAP49_RS02885  627468 ..  627478 +  -5.4  -3.93148   CGGTTACCCGCTTGA                 GGAT CTG ATCC                 TTATTGGTTTCGTTA  60 113
HAP49_RS02910 NONE
HAP49_RS02915 NONE
HAP49_RS02920 NONE
HAP49_RS02925 NONE
HAP49_RS02930 NONE
HAP49_RS02935 NONE
HAP49_RS02940  639368 ..  639401 + -19.7  -3.60792   TTGATGCAGCCACGC     CCCCCAGTCGCTTAC TTGA GTAAGCGACTGGGGA      TTTACGCCTTGGCCG 100 37
HAP49_RS02950 NONE
HAP49_RS02955 NONE
        hpaE  643062 ..  643079 +  -4.1  -3.73224   CCATGGGTGATCACC             CGATCCCA CGC TGGGG-CG             TTTAATCAGGCCTCG  54 3
        hpaD NONE
HAP49_RS02970 NONE
        hpaH  645239 ..  645264 + -12.5  -2.57211   CCGGGCCGCAATAAC         CGGGCG-GGGGC CAA GCGCCGCGCCCG         CTTGTCAGGGAGAAT  76 58
        hpaI  646058 ..  646069 +  -2.2  -2.78816   GCGGGGCGCAAGCGC                CTTC ATCG GGAG                 TCTACTGAACCATGA  39 6
        hpaX  647485 ..  647500 +  -2.5  -2.52946   TGCAGGAGGTAATGA              GGTGC GGAAAA GTACC               GGTTTTATCGCCAAC  38 59
        hpaA  648360 ..  648374 +  -2.7  -3.72695   CCTCGACCTACCGCG               CGGCG CAACA CGCCC               TTTCGTAACCGCGAT  52 3
        hpaB NONE
        hpaC  650662 ..  650683 + -17.3   -2.6472   CCGGCCTGAGGCGTG           GGGGCGCAG TTGG CTGCGCCCC            TCATCTCAACTCTTG  95 32
HAP49_RS03015 NONE
HAP49_RS03020 NONE
HAP49_RS03025 NONE
HAP49_RS03030 NONE
HAP49_RS03035  657472 ..  657530 + -13.8  -2.92192   CTACCTGCATCTCGA TCGGGCGC-TGACGTGAGCGGCGCGGC GGCAGG GCGGCGCCGTTTCTGCCAGGCGCTCGA TCTGATTGACTCACC  80 10
HAP49_RS03040 NONE
        fucP  659121 ..  659146 + -16.2  -2.75343   GCGCCTGATTCACCC         CGGCGGCGAA TCGGCC TTCGCCGCCG          CTTTCGGCATCTGCC  91 33
HAP49_RS03055  661419 ..  661450 + -12.2  -3.14132   CCAGCAGTACGACCA      GGCCGGCCGTGAGCG TGA CGC-CAAAGCCGGCC      TTGATCCCCACCGCA  70 107
HAP49_RS03065  663381 ..  663420 + -10.1  -3.13743   TGCGGCCGCTGTGTT TCGCCAGATAGAGCGCGGC GTCG GCTGCGC-CTATC-GCCGA  TTCGATGTCCAGTTT  64 128
HAP49_RS03075  664959 ..  664972 +  -8.1  -3.97947   CAGAAACGGCAAAAC               CACGC TTAA GCGTG                TTTATCATCAATGCG  74 46
HAP49_RS03105  668716 ..  668729 +  -5.9  -4.75308   CTTTTCCCTGGCGAG               CCGCT GTTT GGCGG                TTTTTCCCTATTAAT  78 498
HAP49_RS03110 NONE
HAP49_RS03115 NONE
HAP49_RS03120 NONE
HAP49_RS03125 NONE
HAP49_RS03130 NONE
HAP49_RS03135  673077 ..  673090 +  -9.5  -5.46698   AAGCACTCCTCCCAA               CCGGC TTCG GCCGG                TTTTTTCGTTTTGGC 100 202
HAP49_RS03140  674244 ..  674260 +  -5.1  -4.60889   AAATGTAAAGTTCGT              TGTGCAA AGG TTGCTCA              TTTTTGCAGGTGGTT  73 314
HAP49_RS03145 NONE
HAP49_RS03150  676014 ..  676025 +  -2.2  -3.35996   GGTTATGAAATGCAT                TCTG GTGG CGGA                 TTATGAATCAGCGTG  46 170
HAP49_RS03155 NONE
HAP49_RS03160 NONE
HAP49_RS03165 NONE
HAP49_RS03170 NONE
HAP49_RS03175 NONE
HAP49_RS03180 NONE
HAP49_RS03185 NONE
HAP49_RS03190 NONE
HAP49_RS03195  684840 ..  684850 +  -2.6  -4.06805   GGTGATGTGTCTTTC                 TTTT TTT AAAA                 TTTGATTCTGGTTTT  55 113
HAP49_RS03200  685737 ..  685755 + -10.2  -3.21695   TTTAATGCCGGGCGT             CGGGGGGC GCA GTCCCTCG             TTGGGTTGGTCGTGC  73 389
HAP49_RS03205  686673 ..  686684 +  -2.2  -3.02144   AACAAGCGGACTATT                TTCG GGAG CGGA                 TATTGAAACGCGTGG  41 115
HAP49_RS03210  687399 ..  687415 +  -2.1  -3.67134   TCGTAGGCCGGGATG              GTGGGGG TGT CCCATGC              TTGTTGCGGTGGTTT  50 438
HAP49_RS03215  688137 ..  688155 +  -2.5  -3.64609   AGTAAGAAAATACCG            TAACG-GT AATA ACACGTTA             TTTGAGGTGATTCTA  47 283
HAP49_RS03220  688938 ..  688956 +  -8.8  -3.88787   GCAAGTAACGGAACC             GCCGGTTA AGT TTACCGGC             TTTATCACACTGTAA  75 33
HAP49_RS03225  690089 ..  690104 +  -2.4  -3.09202   TACTACACGGTTTGC              GCGGGT TAAG GCCCCC               TATTGAACTGTCTGT  42 4
HAP49_RS03230  691032 ..  691057 +  -8.3  -5.39721   GTTTTAATGCCCGTT         TGTCGCCC-TGG CTT CTAAGGGCGGCA         TTTTTTCTGTAATGC 100 100
HAP49_RS03235  691624 ..  691640 +  -3.7  -3.01712   GATTTTTCATTGAGG              TAATCGC AAG GTGGTTA              TATTACGGCGCCACA  45 23
        tssI NONE
HAP49_RS03245 NONE
HAP49_RS03250 NONE
HAP49_RS03255  695810 ..  695832 +  -4.3   -3.3858   GTAGGGCAGTGAATG          GTGATT-ACA GGGG TGTTAATCAC           TTATCACATTGATTT  52 139
HAP49_RS03270 NONE
        rimI  698852 ..  698868 +    -3  -4.44667   TGTTTTTCGCTGTGA              CGACAA CTAAT TTGTTG              TTTATTGTTGAGGAA  64 121
HAP49_RS03280 NONE
HAP49_RS03285  700571 ..  700586 + -11.8  -2.67188   TCACCGCTTTGCCCG              GCGCCG CGAT CGGCGC               GTTCTGATGATGTCG  73 110
        prfC  702517 ..  702536 +   -10  -5.26875   TTCGTGTCACTTAGT            CTGTCGTC AATA GGCGACAG             TTTTTTGATTAAAAA 100 320
        osmY  703442 ..  703484 +  -3.3  -2.76422   CAAAAAAAGAAACTG ATTTGCCGTCGAT-GTCCCG TTGT CGGGGCGGTAGACGGCAGCG AATTTTTTCACAATG  41 115
HAP49_RS03300  703658 ..  703685 +  -2.6   -4.2558   GTCAGCCTGTTCACC        GGCCG-TCGGC GCCCTTA GCCGGCCGGCA        TTTTCCTGCAAACTG  57 8
HAP49_RS03305 NONE
HAP49_RS03310  705047 ..  705066 +  -4.2  -3.53012   CCGCCGGGTGAAGGG            GGCG-CGCT GTG AGCTACGCC            TTTACCGACACCCAC  54 14
HAP49_RS03315  705841 ..  705872 + -13.2  -4.57516   ATGCCGGATTGACGA      GCTTATAACGTGAC TTGC GTCACGTTATAAGA       TTTTCATTTGCGTCT 100 29
HAP49_RS03320  707304 ..  707344 +  -9.7  -2.85351   GGCGCTGTAAGCCAT CACGGAG-CCCGCGA-CGG CGCGA CCGATCGCGGGACTCCGCC TATACTCTAAGCAAC  65 31
        deoC  708503 ..  708517 +  -3.5  -3.18264   CGACTCTCAGCGACA               CAGGG GGATG CCTTG               TTCCTGGCTCAAGAA  46 80
        deoA NONE
        deoB  711116 ..  711130 +  -5.8  -2.54732   GCCGATGGATTACGG               TAAAAC CCT GTTTTA               ATTCGTGAGTTTAAG  49 10
        deoD  712007 ..  712017 +  -2.4  -4.66163   GTCAATCTATTCACT                 CCGC ATG GCCG                 TTTTTGGCTAACGCT  65 73
        yjjJ  713768 ..  713798 +  -9.7  -3.00164   TGAAGTAGCTGCCGG      CGCGTTTGCC-GTC GAGC GACAGGCGATCGCG       TATACTTATCTGCTC  60 353
        serB NONE
        radA  716632 ..  716648 +  -4.5  -3.62096   GTCGCCGACGGCGAG              CAAGATA TGC TATTTTG              TTTAGCATACTAAAC  54 42
        nadR  717964 ..  718002 + -16.6  -3.59649   GCAAAATTAGCGTAA   TGTGCGATCGCGCGGCAG AAA CGGCCGCCCGGGCGCACA   TTTAACGGCTTGTTT 100 41
HAP49_RS03370  719861 ..  719881 + -10.3  -2.90075   CGATCAGTTCGGCCA            TCGCCGGCC AGT GGCCGTCGG            TATCGTTCAGACACA  61 371
HAP49_RS03380  721563 ..  721580 + -14.1  -3.97209   GCGGGAGTAAAAAAA             GGCGCCG CATG CGGCGCC              TTTCGTATTACTTGG 100 31
        sltY NONE
        trpR  729067 ..  729113 +    -7  -3.84961   AAAATCGGCCTCGGG CCTGACCTGGCGCGCTTCCATG ACG CGTTGACGCGAGCCGGTGCGGG TTTCGTGATTGCCTA  65 358
        gpmB  730091 ..  730108 +  -2.5  -3.53811   GCCTTTCGGATAGAA             GCGCTCG ATGT CGTGCCC              TTTGCGGCGCGTCAG  49 103
        creA  731707 ..  731730 + -16.8  -4.25104   GACGAAATAAAAAAA          CGGGGTTCAG CATG CTGAACCCCG           TTTTCATGACGGCAG 100 31
HAP49_RS03440 NONE
        thrL  734091 ..  734113 +   -12  -5.81032   GAAACACAGAAAAAA           GCCCGCAC CTAATCA GTGCGGGC           TTTTTTTTCGGCTTA 100 44
        thrA NONE
        thrB NONE
        thrC  738856 ..  738871 + -10.4  -5.65177   GGTAAAATGCGAAAA              GCCGTC TTGC GACGGC               TTTTTTTATGCCTGT 100 51
         tal  742557 ..  742572 + -10.4  -5.60993   ATCGCGCAGTAAAAA              GGTGGC TCAG GCCACC               TTTTTTTATGCCCGA 100 50
         mog  743348 ..  743366 +  -3.8  -4.60924   TAAGGATTCTTTTAC             AGAAAGCC TGC GGCTTTTA             TTTTTACAGCCTTTA  68 103
HAP49_RS03485  744710 ..  744726 + -13.7  -4.72272   ACAGCTAAAAAAAAA              GCCCTGC AGT GCAGGGC              TTTTTCATCAGGGGC 100 33
        dnaK  747630 ..  747671 +  -6.3  -3.04144   GGTGCCGCTCCCGGA AACCAGCACGGGCGTCGAG GTAA CTCTGCGCCCGTGCACGCA  TGTTAAGGGTAAGCG  53 70
        dnaJ  748846 ..  748866 + -11.1  -5.27335   TGGTTTATGTGCGAA            CCCCGGG CATCTGT CCCGGGG            TTTTTATTTGCGCGC 100 55
        nhaA  750258 ..  750299 + -10.3  -3.81414   ACATAATAAAATGGC TGGTCGGAGCTGTACGGTAT AAA ATAT-GTGCAGCTTCGGCCG TTCTTCGTTGGGACT  82 64
        nhaR  751341 ..  751354 +  -9.5  -5.60993   CAGGACGTAAAAAAA               CCGGC CTGA GCCGG                TTTTTTTATCAAGCA 100 55
HAP49_RS03520  751908 ..  751918 +  -4.6  -3.53343   GCGCCGGATAAACTG                 TGGC GAA GCCG                 TTTCACGCACAGATT  54 30
        ribF NONE
        ileS NONE
        lspA NONE
        fkpB NONE
        ispH  757774 ..  757793 + -11.4  -5.78622   GTGAGTGAATGACAA            CGGGGAGC TTAG GCTTCCCG             TTTTTTTTGGAATGC 100 46
HAP49_RS03555  760106 ..  760124 +  -6.6  -4.07687   GAACAACCGCAGATG             GCCTGAGG CCG CTGCAGGC             TTTTGCGCCCGAAAT  69 20
HAP49_RS03560 NONE
HAP49_RS03565  762378 ..  762395 + -14.1  -5.35222   GCACTCCGTTCCTCA             GGCGCCG TTTT CGGCGCC              TTTTTTCTGCATTTT 100 48
        dapB  763495 ..  763514 +  -7.2  -5.78622   AATGCTATGATAATC            GGGCAATA ATTT TATTGTCC             TTTTTTTTAACATGA 100 80
        carA NONE
        carB  768323 ..  768344 + -17.3   -5.4833   ATAACGCAACGTAAG           GGGCGCTGC AGAT GCAGCGCCC            TTTTTTATTCAGTGA 100 48
        kefF NONE
        kefC  770881 ..  770901 + -16.1  -5.64006   CAAAGGATAAGGGGA            GGGGCGCCG TGA TGGCGCCCC            TTTTTTTGCTTAGCT 100 31
HAP49_RS03600 NONE
HAP49_RS03605  772922 ..  772939 +  -2.6  -3.71487   GGCGTGTGAAATTTC             CCGGCG GAAGAA CGTTGG              TTATTAGATATGCTG  50 32
        folA  773564 ..  773595 + -15.8  -4.57569   GCGTTAGCCAGTTAT      CCCCGGGGGCGCAA GCAA TTGCGCCCCCGGTC       TTTTTACGCCGGTCA 100 48
HAP49_RS03615  775625 ..  775654 + -16.5  -4.11216   AAGGCGATAAAGTGG       AACAAAGGCGGCC ACGG GGCCGCCTTTGTA        TTTTCAGGATGCGGC 100 39
        djlA  783880 ..  783895 +  -4.7  -4.07568   TTGCGCCGCTTTGCC              GGTGT CAAAAC ACACC               TTTTGCAGCGGCCGG  63 436
HAP49_RS03670  791110 ..  791127 +  -9.1  -4.30911   GTTGCGCACCGCCAG             CTCCAGG ATCA CCTGGGG              TTTATCTTGTGGTTG  83 309
        sgrT  798604 ..  798623 + -13.6  -5.60993   GTGCTGTTTCACCAG            CCAGTGGG GTGA CCCACTGG             TTTTTTTATGCGCGG 100 70
HAP49_RS03715  799928 ..  799938 +  -5.4  -2.71144   TTAAACGACGGCATT                 CTTG ATG CAAG                 TCATTGAGAAGGCTA  47 43
HAP49_RS03720  801941 ..  801963 +  -7.6   -3.8709   CAGCCGAAGTTCTCC           CGCGCCAACA GGA TGCTGGCGCC           TTTATAGCGCGGTTT  68 439
        leuO  808292 ..  808311 + -10.6  -4.37092   AAACTAACTCGATGT            GGCGGCCC GAAC GGGCCGCG             TTTTATGGCCGCCAT  89 248
HAP49_RS03755  810428 ..  810464 +  -4.6  -4.84359   CCCTCCTGTTCGAAA   CAATGC-CTAGCC-CG ACAACCC TGAGGCTAGCGCATTG   TTTTTATAAAGCTGC  74 110
        ilvI NONE
        ilvN  812897 ..  812917 + -16.1  -4.89966   GGCGGCGAATAATCG            GGGCGCGGC GTG GCTGCGCCC            TTTGTTTTTCGGTAT 100 50
         cra  814104 ..  814129 + -12.5  -2.74792   AAGTAGTTTGCCTGA         CAGAGGCCCGC GTTG GCGGGCTCCTG          GTTTAGACGTAGTCC  77 35
        mraZ NONE
        rsmH NONE
        ftsL NONE
HAP49_RS03795 NONE
        murE NONE
        murF NONE
        mraY NONE
        murD NONE
        ftsW NONE
        murG NONE
        murC NONE
HAP49_RS03835 NONE
        ftsQ NONE
        ftsA NONE
        ftsZ  832316 ..  832326 +  -4.6  -2.92668   GCTAAACTGTCCCGC                 CGGC CAT GCTG                 TATGCTTGGCTGGTA  47 76
        lpxC  833547 ..  833559 +  -2.6  -4.12902   CACGGGTTTTTCCGG                CGCT TTCTC GGCG                TTTTGCACCTGGTTG  59 286
        secM  834439 ..  834452 +  -3.7  -3.47573   GGTGCAAGGCATTCG               CGCCG GGCC CGTCG                TTCTCGTCTGACTCC  50 1
        secA  837282 ..  837307 + -15.5  -5.00884   TTAACCGATAACACC         CAGGGGTTCAG CTTG CTGAGCCCCTG          TTTTTTGGCACCCAT 100 53
        mutT  837773 ..  837791 +   -11  -2.79505   CGCCAGGCCAACAGC             GGGCGATC AGC GATCGTCC             ATTTCGCTCCAGTCT  71 59
HAP49_RS03895  840815 ..  840841 +   -15  -3.00213   AGCCGCAGCTTGCAT         TCGGGCGCCGCG CAC CACGGCGCCCGC         TATCCTCTTCTTTAT  86 40
        ampD NONE
        ampE  846566 ..  846583 + -14.1  -6.34424   CGCAGAGAAAAAAAA             CGGGCGC CGAG GCGCCCG              TTTTTTTTTTGGCCA 100 43
        clcA NONE
        erpA  849969 ..  849992 + -11.6  -5.65177   CTGCCAGAATATCAA          CCCGCTCGCC TTAC GGCCGGCGGG           TTTTTTTATGCCTAT 100 47
         dgt  853885 ..  853916 +    -3  -3.88114   AGCAATTCCAACCGG      TTGGCTGTCTTGAT TTTT GTAAAGACGGACAA       TATTTGTTTACTATT  54 62
        degP  855498 ..  855513 + -10.4   -5.1925   CTAAAAGCAACAAAG              GCACGC TATG GCGTGC               TTTTTTGCATTATGG 100 54
        rlmD NONE
        relA  862005 ..  862017 +  -2.7  -5.24129   CCCATGCGCCCTCAT                TCTTT CTC AGAGA                TTTTTTATGACCCAA  80 109
        mazG  862824 ..  862834 +  -4.6  -3.14132   ATCTGAAATCTGATG                 CGCT TCC GGCG                 TTCATGGCGCCGGGG  48 28
HAP49_RS03990  863922 ..  863954 +  -7.7  -2.53918   AAACTGAAATCTAAG      GCGTTTTATCGCTCC CGA GGGGCGGTAAAAAGA      AATTTTCTCCGCTAA  55 191
        pyrG  865800 ..  865825 + -18.3  -4.08164   AACATATTTGGTAGG         CGGCGCGCGGT GAGA ACCGCGCGCTG          TTTGTCTGGAGTTTT 100 39
         eno  867193 ..  867206 +  -9.5   -5.9362   GTTGCTAAATAAAAA               CCCGC CGCG GCGGG                TTTTTTTATGTTTTA 100 55
HAP49_RS04005 NONE
HAP49_RS04010 NONE
HAP49_RS04015  870346 ..  870359 +  -5.2  -5.08824   GTCGCTGTGGTCACC               GGCG AACCGC CGCC                TTTTTTGCGTACCCA  83 91
        queE  877759 ..  877777 + -13.1  -4.69559   CATCGCCTAAAATCA             GGGCGCC ATTGC GGCGCCC             TTTCTTTTAACCTTT 100 31
        cysJ NONE
        cysI  882099 ..  882132 +  -5.8  -2.93585   ATTTCTGGGAGTGAG     GCCGGGCGGTCCCT GGGCAG AGGGGCCGCACAGA      TAATTTCAAGTATCA  52 27
HAP49_RS04060  882912 ..  882936 + -17.9  -5.41143   GCGTGATTGACATGA          CAGGGCTCAGC AAT GCTGGGCCCTG          TTTTTTTGCGGGCTA 100 44
        cobA NONE
        cysD NONE
        cysN NONE
        cysC  888721 ..  888745 + -11.4   -4.8048   CTGAATTCAAAAAAA          GCGTGTGGCG TTTTT CGCCATGCGC          TTTTTACTCTAAGCC 100 37
HAP49_RS04090  889542 ..  889572 +  -3.1  -4.16842   TGAGCAGCAGCTGTT      CTGCTTGCGCGATG GCTT CGGCGCGC-GGCTG       TTTCTTCACGCTCAC  61 447
        ftsB NONE
        ispD NONE
        ispF NONE
        truD NONE
        surE NONE
HAP49_RS04135  895893 ..  895916 +  -6.8  -3.95555   TTCTCGTTCCAATCA          GGCTAATTTT CACT AGAATTGGCC           TTTCTACGTAGTTGT  67 105
        nlpD NONE
        rpoS  898221 ..  898241 + -15.5  -5.60993   CGCATCAAATAAAAA            CGGTGAGCA TGA TGCTCACCG            TTTTTTTATGCCCGC 100 56
HAP49_RS04170  905049 ..  905069 +  -4.7  -4.16767   AAACCCTTAAATTCT            CGGTGAGTT TGT AACTTGCTG            TTTATAATTGTTATT  63 130
HAP49_RS04175 NONE
        chbC NONE
HAP49_RS04185 NONE
        chbR  909444 ..  909459 +  -4.6  -3.17075   CGAGGGGGAATGCCG              CGCCGA GCGG TCGGCC               TTCCCTTGCCAAAAA  48 123
        chbG  910508 ..  910520 +  -6.2  -3.57263   CGTCCTGCGCCAACT                GCGG TTCCT CCGC                TTTCGCCGTGCGGCT  57 277
        pncC  912389 ..  912408 +    -8  -2.79291   GTAAATTAGGCTTGA            TACTGTAT GACC ATACAGTA             TAATTAGTGACATTT  59 37
        recA  913559 ..  913595 + -10.9  -2.53911   GCAGTTCTAATCGCT    GAAGATGTGCGCCGC CGTTTAT GTGGCGCATATCCTC    TGAATTCAGGCTTGA  67 31
        recX  914188 ..  914232 +  -8.6  -3.04443   TCCCCACTTTTTGTT CGTGAGCTGGTTGTCATCGTCG GGA TGACGC-GCC-ACCGGCTCACG TGTCGTTATTCTAGC  62 84
        alaS  916915 ..  916941 +  -6.7  -4.33675   AATAGCACGGACAAA         CGCCATAAT ACTTTGTTG ATTATGGCG         TTTTCATACTGTGCT  74 50
        csrA  917332 ..  917369 +  -9.1  -3.08776   ACGACTTACTGATTC   CGAAGCAGCGTCTCGTT GCCA GACGAGACGCTACTGCA    TCGTTTTACCCACTT  65 29
HAP49_RS04230 NONE
HAP49_RS04235 NONE
HAP49_RS04240 NONE
HAP49_RS04245  918090 ..  918103 +  -9.5  -5.15526   ACCATCTAAGAGAAG               CCCGC CTTA GCGGG                TTTTTGCTTTTCTGT 100 37
HAP49_RS04250  918379 ..  918392 +  -9.5  -4.87318   ACCATCTAAGAGAAA               CCCGC CCTG GCGGG                TTTTTCGCTTTTCAG 100 174
        yqaB NONE
HAP49_RS04260 NONE
        gshA NONE
        luxS  921892 ..  921907 + -10.4   -5.1925   CGCAGAGACAAAAAA              GACGCG ATTT CGCGTC               TTTTTTACGTTCTGG 100 53
         ffh  925742 ..  925775 +   -16  -4.67982   GGGCTTTTTATATTG     CAACCGGGCCCCGT CCCTCA ATGGGGCCCGGCTG      TTTTATTAACTAAAG 100 183
        rpsP NONE
        rimM NONE
        trmD NONE
        rplS  927868 ..  927889 + -15.9  -5.80817   AGTTAATAGTTATCA           GGGGTTGGC CTAT GCCAACCCC            TTTTTTTATCTTAAA 100 54
HAP49_RS04330 NONE
        tyrA  932723 ..  932741 + -14.6  -5.75599   GCGGTAAACGTAAAA             GGTTCGGC TTG GCCGAACC             TTTTTTTATGGTTTC 100 48
        rluD NONE
        pgeF  937504 ..  937518 +  -5.7  -3.83998   ATAACCTTGAAAATT               TGAGG GATGA CCTCA               TTTAATCTCCAGTAG  64 100
        clpB  940160 ..  940179 +   -15  -5.11389   CGTAAAAAGATGAAA            GGGAGCGG GTGA CCGCTCCC             TTTTCTTTATCTTCT 100 52
HAP49_RS04375 NONE
HAP49_RS04380  942416 ..  942451 + -12.2  -3.45839   TCTGACGATACACCA    TATCTTAAAGATGACT TCCG AGTCATGTTTAAGATA     TTGCTCTTTAACAAT  80 80
HAP49_RS04385  945513 ..  945523 +  -6.8  -4.58685   GGCTTAACCTTACAA                 CACC GAA GGTG                 TTTTTAGAGAGATTT  76 12
         rrf  945765 ..  945777 +  -7.7  -3.05343   CTGGTAATGCGCAAG                TCGCA GAG TGCGA                TATTGCCGGTATCGA  59 68
HAP49_RS04395  945906 ..  945927 + -14.5  -4.84527   CCACTTAATTGATAA           GCCCTGAGT TTCG ACTCAGGGC            TTTTTCATATCTGCA 100 38
        dkgB  946937 ..  946954 + -10.5  -5.42265   CAGTAGTTAGCATAA             GGCGTCC ATCA GGGCGCC              TTTTTTATCGTTTCA 100 51
HAP49_RS04410  949149 ..  949167 + -13.8  -4.31329   AAACCCTTGCTGCCT             GGCCCGCG TTT TGCGGGCC             TTTTCGCATTTTTCA 100 47
HAP49_RS04415  950182 ..  950197 + -10.4  -5.60993   GCAGCTAATAAAAAA              GCACCC CGAA GGGTGC               TTTTTTTGTGCCGAA 100 44
HAP49_RS04430  953541 ..  953553 +  -7.7  -5.13473   GTGGTCAGACGGAAT                CCTTC GCT GAAGG                TTTTTTCCGTCTGCT  93 377
        dnaQ  954456 ..  954474 +  -4.5  -4.65895   GCCTGTGGCGCGGAG             CGCCG GCGGAATAA CGGCG             TTTTTGCGTGAAAAA  70 12
HAP49_RS04445  954701 ..  954726 + -16.3  -3.33885   CGCCACTATTCAGAA         GCCCTGAGTTA GCGA TAACTCAGGGC          TTCGTCGTTTCCGTT 100 36
HAP49_RS04455  958347 ..  958369 +    -2  -4.07568   CCACCGCCATATCTT           CACCAAAA GTCGTGA TTTGGGTG           TTTTCCAACAGCCGC  57 223
HAP49_RS04480  962847 ..  962871 +  -7.1  -5.38249   CCTTCCCTTTCTCCG         TC-GCCGGCC CGCTGA GGCCGGCAGG          TTTTTTCTCGTTAAT 100 94
HAP49_RS04485  963795 ..  963811 +  -2.9  -2.70354   CGCATAACGGGAGCG              GCGGATG ACC TATCAGC              TGAATTTCTCCGCGC  40 34
HAP49_RS04490 NONE
HAP49_RS04495 NONE
HAP49_RS04500 NONE
HAP49_RS04505 NONE
        hpxK  968787 ..  968800 +  -3.8  -3.01924   CACGCCGGTTGCCGG               CCTG GTAGTG CAGG                TGTTCGCCGGCCATG  45 436
HAP49_RS04525 NONE
        mtnC NONE
HAP49_RS04535  972786 ..  972804 +  -5.8  -3.72893   GCGGTCAGACGGCCG             CCCTGCAG CAG CGGCCGGG             TTTCATCGACCCATA  60 509
HAP49_RS04545  974988 ..  975018 + -16.2  -4.43283   GCTTGGCATCAGAGT       GGCCTCGGGTTGAT AAT ATCGACTCGGGGCC       TTTCTCTTTCTCTCC 100 319
        lpcA  978527 ..  978539 +  -9.1  -2.89564   CCCCATGAATAAGAA                TGCGG GCG CCGCA                TGTATGCCGTGCCCG  63 63
HAP49_RS04565  979599 ..  979609 +  -4.6  -3.57144   CGGGTAGATGCTGAT                 GTCG ACG CGGC                 TTTGGCCATAGGCGA  55 230
HAP49_RS04575 NONE
HAP49_RS04580 NONE
HAP49_RS04585 NONE
HAP49_RS04590 NONE
        nqrE NONE
        nqrF NONE
HAP49_RS04605 NONE
        nqrM  987776 ..  987791 + -11.8  -5.95539   GTAGCGAAGCGAAAA              CCCGGC CTTG GCCGGG               TTTTTTTATTTCGCC 100 37
        dinB  989943 ..  989959 + -10.8  -4.74103   CTTGGGAATAAAAAA              GCCGGC GATTA GCCGGC              TTTTTGCGTTAAGCG 100 30
         gpt  992261 ..  992279 + -13.8  -3.91084   CCAGTTCCAAGTCAA             CGCCCGGT TAT GCCGGGCG             TTTGCTTAAGGATAA  90 47
        frsA NONE
HAP49_RS04640  994282 ..  994307 + -15.5  -3.00923   GTATTGTGCTGATTT         CGCGTTGTGCC TGTT GGCATAACGCG          TCTCTCCTGTTACAA  90 55
        proB NONE
        proA  996758 ..  996788 + -14.1  -4.56597   TTGCGGTCATAAAGA      C-GTCAGGGCGCAG CGTG CTGCGCCCTGATTG       TTTTTGGAAAAGGGG 100 48
HAP49_RS04655 NONE
HAP49_RS04660  998432 ..  998453 +  -6.5  -3.14132   TTTTATGCACCTGCA           TGG-GAGGCC GCA GGCCGCGCCA           TTGCTGGCGCGGCAG  56 113
HAP49_RS04665 NONE
HAP49_RS04670 NONE
HAP49_RS04675 NONE
HAP49_RS04680 NONE
HAP49_RS04685 NONE
HAP49_RS04690 1003215 .. 1003228 +  -9.5  -5.39721   ACAAGCGCTCCCAAA               CCGGC TCAG GCCGG                TTTTTTATATCCTCG 100 196
HAP49_RS04730 1009943 .. 1009964 + -15.9  -2.93252   ACGGTTAATTTAATT           GCATGCGGG GCAA CCCGCATGC            TGCTTATTAACGCGT  90 61
HAP49_RS04735 1010593 .. 1010610 +    -2  -2.66291   ATTGATAAGGGTCTA             CGGATGT CAATT AC-TCCG             TCATATGGCTGTATA  39 76
HAP49_RS04740 NONE
HAP49_RS04745 NONE
HAP49_RS04750 NONE
HAP49_RS04755 NONE
HAP49_RS04760 NONE
HAP49_RS04765 1016323 .. 1016335 +  -9.1  -2.75074   TGGGTGCAGTGGTGT                GCGCA GGA TGCGC                TGATATTGAAGTGGG  62 228
HAP49_RS04775 1019182 .. 1019206 +    -3  -3.07198   AAATATGAAGAAACG          CTTTTATTCA ATTAA TGAATAAAAA          ATTTATCTGTGGACA  44 127
HAP49_RS04780 1020569 .. 1020579 +  -4.6  -3.80552   ACTCGAATTGTTTTG                 GGTG TAG CGCC                 ATTTTTTATAATATT  56 193
HAP49_RS04785 1022323 .. 1022335 +  -2.7  -3.83568   TTCTAACCTGTGGGG                TGTTT AAT GAACA                TTATTCTACATCTCA  54 35
HAP49_RS04790 1022954 .. 1022987 +  -3.2   -4.3467   CTGATAATTTAATTG    TGA-GCGA-TTGCTGC ATAC GCGGCATCTCGCGTCA     TTTTAATATGAGAGT  61 37
HAP49_RS04795 1023205 .. 1023215 +  -3.2  -4.74706   CGCTGGAACGCTTCT                 CATC GGC GGTG                 TTTTTCAGTGTTAAA  66 47
HAP49_RS04800 1024981 .. 1025009 +  -7.4  -4.59773   CCTCCTCAAGCATTG       C-GATGCGGCGCT CTGT GGCGCGGCATCCG        TTTTTGGACATGCCG  82 406
HAP49_RS04805 1025285 .. 1025315 + -11.1  -3.96387   ATTTAATGCTTTTAT       GACGGTGCTTCCT GTTAA GGGACGCGCCGTC       TTTCATTCCATTACT  84 35
HAP49_RS04815 1027286 .. 1027297 +  -3.6  -4.28713   GCTCACATTTTGATT                CGCT TAAG GGCG                 TTTCTTCCTGATCTT  64 83
HAP49_RS04825 1029474 .. 1029490 +  -5.1  -4.78753   AATGATTGATGGAGT              GGCTTAT TTA ATCAGCC              TTTTGTTAATATTCC  76 338
HAP49_RS04830 1030375 .. 1030393 +  -2.5  -4.03302   AATATCCGTGATTGA            GCCTAAAT CTAA ATTT-GGC             CTTTTTTATTTATAT  55 141
HAP49_RS04835 1031881 .. 1031904 +   -14  -2.52464   AGTAGTCGTGAATAA          GGGAGATATC TGAT GATATCTCCC           TGAATTGAGCCGGAA  81 36
        pqqA 1032062 .. 1032082 +  -9.7   -4.5081   CGTTAATCGCCCGTC            TGCCCGC CTTTCGC GCGGGCA            TTTCTTTCCCTCTTT  90 35
        pqqB NONE
        pqqC 1033772 .. 1033782 +  -6.8  -2.79183   GCGGGTCTGGCACAA                 CCAG AGG CTGG                 TGTAATGACGCTGAA  53 10
        pqqD NONE
        pqqE 1035220 .. 1035232 +  -4.7  -4.14392   GTCTTCACTGAGATC                TGCCG GAA CGGCC                TTTTGAAAATTACGC  63 51
HAP49_RS04890 1041636 .. 1041649 +  -5.2  -3.73775   CAGCGGCGAGACGCT               GCGG GCCAAA CCGC                TTTAATCGGCCTCGC  59 7
HAP49_RS04900 1043035 .. 1043073 +  -3.1  -4.04482   GATTGGCGTCGCTGT  CCGGCA-GTTCACCGCGGA TGG TGC-CGGTGATCATGCCCG  CTTTTTTTTCCGCCG  58 177
        exc2 NONE
HAP49_RS04915 1044583 .. 1044595 +  -9.1  -3.34398   TTTCTGTTCAACGGC                GCAGC ACC GCTGC                TGTTTGAAGGGAGAG  69 133
        feaR 1045518 .. 1045541 +   -16  -3.07816   AGTATCAGTAAGCCA          G-GGCGCGGGC CAG GCCCGCGCCGC          TTCACTCAATAGCGG  93 30
         ada NONE
HAP49_RS04940 1050151 .. 1050170 + -11.4  -3.07043   CAGGATGAAGTCGTA            CTCGCCGC TGAA GCGGTGAG             TATTGAGATCCTGCA  66 329
HAP49_RS04950 1052343 .. 1052364 +    -3  -4.63218   AGTGTAACCGTCGTT           GTTGATCA GGAAGA TGATCGGC            TTTTGTTCGCAGCGC  69 381
HAP49_RS04960 1054886 .. 1054898 +  -4.7  -3.07233   GCGATAGCATACGCA                GGCCG GTG CAGCC                TGTTAAAAGTTATCG  48 34
        pagP 1055674 .. 1055718 + -10.1  -3.08471   GATAAAAGGAACTTG TCGCCGCAGGCGGCGTCGGAGA GGTA TC-CCGGCGC-G-CTGCGCCGA TTGCATGCCGTTATG  68 75
HAP49_RS04970 1056244 .. 1056269 + -13.3   -4.9792   TTATTTCATGATCAA         AGAACGGCGGA GCGC TCCGCCGTTCG          TTTTTGTATAAGCTG 100 30
HAP49_RS04975 1056641 .. 1056670 +  -6.3  -3.89614   GCTGCCGTCCTTCTG       CAGCGTCAGCGGC ATGC GCCAATCACGCTG        TTTATCCAGGTTGAA  65 113
HAP49_RS04985 NONE
HAP49_RS04990 1058943 .. 1058978 +    -6  -4.07687   TGCGCACCAGCGCCG    GGCTGGCGGCGACGCAC CAG GTGCGCTGC-GCCAGGA    TTTTCAGCACCAGAT  65 421
HAP49_RS05000 1060522 .. 1060544 + -11.9  -3.72695   ACACTTAAACCTCAA           CGCCCCGCC ACACC GGCGGGGCA           TTTCATCCGCAACAT  85 84
HAP49_RS05005 1061304 .. 1061355 + -11.5  -2.75064   TAGCGAAAAGCGGCT TTCTCATTGGCCGGGGGCGGGGT AGCGTA ATCCCGAACCCGGCAAATGAGGC TAATTCAATGAAACA  71 121
HAP49_RS05010 NONE
HAP49_RS05015 NONE
HAP49_RS05020 1062810 .. 1062824 +  -3.4  -3.53444   GAGGTTCACGGTGCG               CTGCGC GCC GAGCGG               TTTCCAGGACAATCC  49 277
HAP49_RS05040 1066129 .. 1066167 +    -5  -3.57263   GTGTTCGCCGTAACC   GTTGGAGGCGAAGCCGCC TGC GGTGGCGTCGAAACCGGC   TTTGCCGCTGGCGAT  55 422
HAP49_RS05050 1068446 .. 1068465 + -16.4  -3.92625   TCATCAATCTCACAG            CGGGGGCG GTGA CGCCCCCG             TTTGCTTCAGGTCTC 100 198
HAP49_RS05060 1070454 .. 1070485 +  -5.2  -3.05384   AAGAAATTCGGCTCA      CATTGAGGGCTT AACCCAAG GAGGCCTCAATG       TTAAATGCGACCCGG  51 238
HAP49_RS05065 1071321 .. 1071356 +  -3.2  -2.52676   GCCATGCCGACCGGA    CGATCGCC-GTCGATCA TCA TCAGCGTCAGGTGATCG    TCGCTTGGCCGGCTG  39 306
HAP49_RS05075 NONE
HAP49_RS05080 1074935 .. 1074945 +  -4.6  -2.91276   TGAGGTGGTGCTGCG                 CGGC AGT GTCG                 ATTTCTAAGCCACGG  47 7
HAP49_RS05085 NONE
        aroL 1076174 .. 1076190 + -15.1   -5.1167   ACCTTTTCTTCTCTT              CGGGCGC TGT GCGCCCG              TTTTTCTATTCCGTT 100 40
HAP49_RS05100 NONE
HAP49_RS05105 1077702 .. 1077726 + -15.8  -3.51934   GACCTGCAGCCCAGC          GGAAACCGGC GCCAG GCCGGTTTCC          TGTTTATCCCCCCGC 100 39
HAP49_RS05110 NONE
HAP49_RS05115 1079412 .. 1079432 +  -2.6  -4.65895   CCGCTATTTTCACTT            TCTGTAAA AAATC TTTACGGG            TTTTTGCCTCCCGGA  65 72
HAP49_RS05120 1082246 .. 1082265 +    -7  -2.50816   TCGTTGAGCACAGAG            GTCGCCTC GCAA GGGGCGCC             GTTCATCAATGGAGA  52 62
HAP49_RS05125 1082866 .. 1082896 + -17.5  -4.72556   CTGATCGCGGCCGTT       TGCCCGCCGGCGC CGCGT GCCCCGGCGGGCG       TTTTCTCGTTTTTAG 100 37
HAP49_RS05130 NONE
HAP49_RS05135 NONE
HAP49_RS05140 1086954 .. 1086975 +  -4.5  -4.93296   CGCGATATTTTAATT           TAAAAAGCA CGAA TGCCTTTTA            TTTTTCTGCTGATAA  76 152
HAP49_RS05145 1087881 .. 1087918 +  -2.1  -3.04515   TGTAGCATTCCATCA   TAATTAACGAGTGCC GACACCAG GGAACTCATTAGTTA    TATTCCACCGTATTT  42 52
HAP49_RS05150 NONE
HAP49_RS05155 NONE
HAP49_RS05160 1091296 .. 1091316 +  -4.5  -4.08767   ATAGCCATAAATCTG            CGCTCGACG CGA CTACGGGCG            TTTTGCGCCCGTGAG  61 46
        ppnP 1091798 .. 1091825 + -13.4  -3.00946   GTTCGCTAGGGGAAC        GCAGGGCTCAGC GAAG GCTGGGCCCTGG         TCATTTCTGAGGCGA  80 46
         mak 1093900 .. 1093917 + -12.7   -3.5774   AAGCGTTGCAACAAA             GCGCGAG CAAG CTCGCGC              TTTAAACCCTTCCCT  83 39
HAP49_RS05180 NONE
HAP49_RS05185 1094795 .. 1094823 + -11.2  -3.61178   TCGCTGTCGACGTAG       TTTTTC-CCCAGC AGGC GCTGGGCGAAAAA        TTTCAAGTGGGTGAC  73 215
        phoB NONE
        phoR NONE
        pstS 1103398 .. 1103412 +  -5.6  -5.00616   TAAGCGACAAAAAGC               GGCGTA ATT TTCGCC               TTTTTTCACGGCAAA  79 38
        brnQ 1105210 .. 1105229 + -13.6  -5.22039   CCGGCTTAATCCAGG            GCCACGGA CATG TCCGTGGC             TTTTTTACGTTTAAA 100 48
        proY 1106677 .. 1106694 + -12.7  -5.49809   GACTAAATGGAAAAA             CACCGGC TGAG GCCGGTG              TTTTTTTAGGGTTTA 100 35
        malZ 1110631 .. 1110642 +  -7.2  -3.73402   GAATCAGTTCGGCGG                CGCC CCAC GGCG                 TTTGCTCGACCATCT  65 234
        queA 1115083 .. 1115109 + -12.9  -3.53811   TCGGCGGCTAAATTC         CCGGGCTGCGC GCACG GCGCGGCCCCG         TTTCAACGACATCAG  83 30
         tgt NONE
        yajC NONE
        secD NONE
        secF 1119520 .. 1119538 +   -16  -5.81412   TCAGCGAAATGAGAA             GGAGCGCC GCC GGCGCTCC             TTTTTTTTGCCTCGA 100 53
        nrdR NONE
        ribD 1121932 .. 1121942 +  -8.2  -3.03903   ATGATAGAATCCGCC                 CCCC TGC GGGG                 TATTGAACCCATTTT  62 95
        ribE NONE
        nusB 1122882 .. 1122906 + -14.4  -4.35483   AGAAAAAGTAAAACA          TTAAGGCCGG CATTC CCGGCCTTAA          TTTCTTCTCGTGGAA 100 30
        thiL NONE
        pgpA 1124412 .. 1124435 + -11.6  -2.94561   GGGCTGTTCTGACAG          ACGGGCGCGG CGTT TCGCGCCCGC           TACTCTTTATTCAAA  73 29
        thiI 1130248 .. 1130269 + -14.5  -5.60993   CGGCGTAAACGAGAG           GGGCTGAAC TGGT GTTCAGCCC            TTTTTTTATCGGCAA 100 50
HAP49_RS05355 1132435 .. 1132457 +   -22  -4.41348   CGCGATTAATCTCGA           CGGGGCCGGC ATT GCCGGCCCCG           TTTCTTTACAGCGAA 100 32
        bolA 1142066 .. 1142087 + -14.5  -3.90048   CTACTGACGAATTTT           GAAACGGCC TGCG GGCCGTTTC            TGTTTTTGACGACGA  93 92
         tig 1143735 .. 1143767 + -19.3  -4.59853   AACCGGCGCACGATG      AAAAAGCCCGCAACC TCA GGTTGCGGGCTTTTC      TTTTTGCCACGTTGC 100 89
        clpP 1144769 .. 1144782 +  -2.3  -3.65812   CTATAGTAATCAGAG               TGGGC AGGG GCTCG                TTCTGTTGCGGCCCC  50 61
        clpX 1146182 .. 1146200 + -13.2  -4.91852   GCGTTATCAGCAAAA             TGGGGGAT TTC ATCCCCCA             TTTCTTTTTCCTGCA 100 59
         lon 1148730 .. 1148759 + -11.6  -5.61596   CATTGATAAAACTTA       TACTGGCAAG-CC ATTTC GGACTTGCCAGTA       TTTTTTTGTACCGCT 100 58
        hupB 1149270 .. 1149288 +   -11  -6.23317   AAGGTAAGATACAAG             GCGCATCG GAC TGATGCGC             TTTTTTTATTTTTGT 100 109
        ppiD 1151286 .. 1151301 + -11.8  -4.26188   AGTGCAACAAACAAA              GGCCGC TTTC GCGGCC               TTTTCCATATCTGAC  95 63
HAP49_RS05435 1151857 .. 1151879 + -14.9  -4.08706   GTTGACCAAACGGGC           GAGGGAGCC AGCGC GGCTCCCTC           TTTCTGTAATCACCA 100 122
HAP49_RS05440 1152781 .. 1152794 +  -2.3  -4.98255   GGCCCGGTACGAAGG               TGCTC GGCA GCGCA                TTTTTCTGGTTGGGA  77 478
         cof 1155841 .. 1155860 + -13.6  -6.06723   TTCTCCTTACAGCCG            GCCGGGTA TGAC TACCCGGC             TTTTTTTTTACCCGA 100 43
HAP49_RS05465 NONE
        smdA NONE
        smdB 1161153 .. 1161170 + -14.1  -4.32678   AACCCGCCTGAATAT             GGGCCGC GCTC GCGGCCC              TTCTTTCTTTCCAAC 100 30
        glnK NONE
        amtB 1163140 .. 1163161 + -15.9  -4.59342   ATGATGAAGCCAAAA           GGGGCGATG GAAA CATCGCCCC            TTTCTTTATGCTGCG 100 77
HAP49_RS05495 1164796 .. 1164822 + -11.7  -5.07652   GCAAGATGAAATCAA        CAGCCTTTGCGC TTCG GC-CAAAGGCTG         TTTTGTTTTACCAGC 100 56
         ffs 1165481 .. 1165491 +  -2.4  -4.87892   TCTGTCATCAGGCAG                 AGCG ACA CGCA                 TTTCTTTTCTTCCCG  68 109
HAP49_RS05525 NONE
HAP49_RS05530 NONE
HAP49_RS05535 1169796 .. 1169818 + -14.9  -3.53811   CTCGCCATAAAAAAA           GCCCCGTTG AGTAG CAACGGGGC           TTTGCGACAGATGAC  91 86
        acrR 1175600 .. 1175621 +  -2.3   -3.8647   CCGTCCAACGCCGGC           TCCCTGCCTT TAT AAGG-AGAGA           TTTCATGTCATCAGT  53 11
HAP49_RS05565 1175961 .. 1175976 +  -6.2  -2.90615   GACGCTGGCTGCGGA              GAAAGT GCTG ACTTTC               TGATTTCGCGACAAT  52 7
        mscK 1179485 .. 1179503 + -14.6  -2.81547   CAATGAGAGGCGAAA             GGGACAGC GGC GCTGTCCC             TGGTTACTGTCCGGC  82 35
HAP49_RS05585 1180926 .. 1180968 +    -4  -4.10855   CCTGCCATTTCTTCT CCGGTGTGTTTCTC-CCGG GGGCGG CGGGTGAGCGGCGCGCCGG TTTTCAGGCAGTTTT  59 107
         apt 1181574 .. 1181599 + -16.1  -3.05963   GCCCCTTGGGCACAA         CGGCCTCGCGG ATCG CCGCGGGGCTG          TGTTAGCATGACCCT  93 50
        dnaX NONE
HAP49_RS05600 1183951 .. 1183964 +  -2.3  -2.64099   ATGCAGTTGCCGCCT               GGCTT CAAG ATGCC                GTTCTGATGCAAACC  39 5
        recR 1184589 .. 1184606 + -12.7  -4.61482   TGATGTTTTCCCGGA             TGGGGCC GCCC GGCCCCA              TTGTTTTTTGCCAAA 100 38
        htpG 1186597 .. 1186626 + -18.7   -4.4874   CTAAAGTTGAAGATA       TGCGCCCTTAACG GCAC CGTTAGGGGCGCA        TTTTCGGTTTTTCCC 100 37
         adk 1187454 .. 1187474 + -19.7  -6.10489   GCGCATCGTGCATGA            CGCCGGGCC CGT GGCCCGGCG            TTTTTTTTTGCCGTT 100 47
HAP49_RS05620 1188755 .. 1188772 +    -4  -5.77677   CAACCCACAAATTCC             GCGCCG TTCCCC CGGCGA              TTTTTTGTTGTTTTC  93 48
HAP49_RS05625 NONE
HAP49_RS05630 1191282 .. 1191294 +  -9.1  -3.42861   CAGGGAAGAAGCCCA                CAGGC ATA GCCTG                TTGCTGTTATCGGTT  69 17
        hemH 1192411 .. 1192435 +  -7.2  -3.62597   GTGCATCGTGATCGG         GCGG-GGATGT GTTA ACATTCTCCGC          TTGTTAAACCGTCAC  64 64
HAP49_RS05640 1193786 .. 1193803 + -12.7  -5.60993   CGCTGAAAAAGAAAA             GGTCCGG CATG CCGGACC              TTTTTTTATGCGCGG 100 43
HAP49_RS05655 1198815 .. 1198864 + -15.1  -4.95155   GTGTATCGCTAGAAG CGTC-GCGG-AACGGCGCTCTCGC TTGTC GCGGG-GCGCCGTTCCCGCCGTCG TTTTTCTCCTCTGAA 100 29
HAP49_RS05665 1200945 .. 1200967 +  -2.5  -3.06796   CTGAGAGTGAAAACG           CCTGACGGC TATAT GCTGGCTGG           TTCACTCAGGTGGCC  42 21
HAP49_RS05690 1209348 .. 1209358 +  -5.4  -3.14564   CCAAAATCGGTTGTT                 GCAA CGC TTGC                 TTGGTCGCCGCGTCG  48 399
        dacB 1212283 .. 1212308 +  -7.5  -5.24129   GTGAACGCTTGCGCC         GGGCTGTCGAT CACC GTCGGCAGCCG          TTTTTTCTGCCCCAG  93 160
        cueR 1238564 .. 1238587 +    -3  -3.13403   GATCTTCCGCCGCCT          GCGCGCGCCAG CTG CTGTCGC-CGA          TATTGATGCGCCCCA  44 111
         cfa 1241671 .. 1241690 +  -7.8  -3.20349   CGTTGTCCGGCTCTT            GCTGCACC TGCT GTTGCAGC             TGTTGGATTTCCGGC  56 375
HAP49_RS05830 NONE
HAP49_RS05835 1246931 .. 1246953 + -14.2  -4.54727   AGCTCGATGAAAAAA           GGGGTTAGCT TAA GGCTAACCCC           TTTTGCTTTCGGCGG 100 50
        cysS 1251662 .. 1251679 + -12.7  -4.99035   AGTGAAAACAAAAAA             GGCGCTG AATT CAGCGCC              TTTTTCTATGGCTGC 100 50
HAP49_RS05875 1253251 .. 1253263 +  -5.5  -3.53012   TGGTTTGGGCATCGG                GGAGC CAG GCTTC                TTTAAACAGCGCACG  56 74
HAP49_RS05880 1254094 .. 1254106 +  -3.4   -3.7347   AGCATTTTTTGAAGC                TCCT AATAA AGGA                TTGTTGAGTCTTGAA  54 428
HAP49_RS05905 1257696 .. 1257708 +  -2.7  -3.52093   ATAGCGGTCGCTAAG                TGATG CCG TATCA                TTGTGATTGACATAT  49 151
HAP49_RS05910 1258669 .. 1258686 +  -3.4  -3.91084   CAATGAGAGATGAAT             CGCTTT GAAAAG AAGGCG              TTTGCTTGAAAGTCG  54 28
HAP49_RS05915 1258976 .. 1259001 + -16.9  -5.07053   ATTCGCTGAGGGCCG         GTCGGCGCGGT GGTG ATCGCGCCGAC          TTTTTTGCACTGATT 100 32
HAP49_RS05920 1260785 .. 1260801 +  -9.4  -6.02914   TCCCTGTTAAGTTTA              TCCCGC CTTGT GCGGGA              TTTTTTTTATCTGCG 100 183
HAP49_RS05930 1262868 .. 1262880 +  -4.7  -5.47218   AACAGGCAGAACAGG                GCGCG TAA CGCGA                TTTTTTTGAATAACA  87 18
HAP49_RS05935 1263676 .. 1263693 +  -6.9   -5.5112   TTTCGTACAAATATT             CCCGGTT CCTA GGCCGGG              TTTTTTGTTGCTAAG 100 156
HAP49_RS05940 1265624 .. 1265654 +  -9.7  -2.76261   ATTCTGTTTCGCTAA       CCGCTTTCAGCCT TGCCT GGGCTCGAAGCGG       GTTTCGCAATTAGGG  65 26
HAP49_RS05950 1267455 .. 1267468 +  -3.1  -4.36914   CACCCCCTTCGCCCG               TTCGC GGGA GTGAA                TTTTGTGCACCACCG  64 452
        cspE 1273563 .. 1273579 + -13.7   -5.4505   CTGAATTTCTTAAAA              CCCGCTC ATT GAGCGGG              TTTTTTATTGGGCGC 100 50
HAP49_RS06005 1277210 .. 1277235 +  -3.9  -4.64861   CCGGTCAGCCCATCG         CGGGTGCTG ATGCGCTG CAGCTCCTG          TTTCTTTTCCGCCAA  72 523
        tatA 1278246 .. 1278266 +  -7.6  -5.15117   GCGCACAATAAAAAA           CGGATG-CC TTGC GGACATCCG            TTTTTTGGCGTTTTC  91 53
HAP49_RS06085 1292686 .. 1292728 +  -5.5   -4.3739   GCCGGGGCAACGTCC GCCTGCGCCGGTG-CGCTG GCCGGTA CGGCGACGCCGGC-CGGGA TTTTCTGCACGACTG  71 133
        ubiF 1305740 .. 1305755 + -11.8  -4.45083   GCCAGACAGCAAAAA              GCCCGC CGAA GCGGGC               TTTTCTAAATATGGC 100 86
HAP49_RS06215 1316632 .. 1316657 + -17.7  -5.63504   GTTTGCCCCGACTTG         GCGGGAAGAGA GCGA TCTCTTCCCGC          TTTTTTTATCCCATT 100 91
        glnS 1318501 .. 1318518 + -14.1  -5.76633   GAAATTAATGAATCA             GCGCGGC TTAG GCCGCGC              TTTTTTTATGTCTGC 100 55
HAP49_RS06225 NONE
HAP49_RS06230 NONE
HAP49_RS06235 1323654 .. 1323672 + -11.7  -5.43866   TCATGACATGATCTT             TCCCCGG CTTGC CCGGGGA             TTTTTTTGCCCGTTG 100 182
        seqA 1327430 .. 1327440 +  -3.2  -3.55444   CCGTCATGATGGCCG                 TGCG CGA CGTA                 TTTGCCCGGTCACCG  49 54
         pgm 1329146 .. 1329163 + -11.3  -5.61596   CTCGTCTGATAAAAA             GCGCTGT TTTT ACAGCGC              TTTTTTTATGCCCGT 100 49
HAP49_RS06270 NONE
HAP49_RS06275 1330667 .. 1330694 +  -9.8  -3.33348   GGTTTGCTGAGATAG        TCGTCGGCGCCGG CGT CCAGCGC-GGCGA        TCTTGTCCTCTTCGG  66 441
HAP49_RS06310 1338890 .. 1338909 + -12.8  -5.60993   CCGATTCACGAACAA            CCCTCGCC CTGC GGCGGGGG             TTTTTTTATGCCCCA 100 48
HAP49_RS06315 1339960 .. 1339976 +  -2.2  -2.52946   GCGTTTGCGTTACGG              CCATTG ATTGA CAAGGG              AATTTTATGACCACG  38 19
        phrB NONE
HAP49_RS06325 NONE
HAP49_RS06330 1343193 .. 1343225 +  -9.9  -4.09511   ATCTTTTTCTTCCCC     GGATCCAGCCCGGC CTGCGC GCCGG-CTGAATCC      TTTTACCGCGCTATT  80 40
        pxpB NONE
HAP49_RS06340 NONE
        pxpA NONE
HAP49_RS06350 NONE
HAP49_RS06355 NONE
         pcp 1348088 .. 1348098 +  -2.4  -3.14344   CTGAAAGTGGCGGGC                 GGCG CAA CGCA                 TTAATCAAGAAAATC  42 11
         nei 1348956 .. 1348981 + -10.3  -2.64274   AGAAATAACCAAAAA         AAACGCCGCCC GAAA GGGCGGCGCTG          TGCGTTTCAGCCGGT  68 33
        sdhC NONE
        sdhD NONE
        sdhA NONE
HAP49_RS06390 1354457 .. 1354470 +  -6.7  -3.16039   TCGAGTGAACCGTTT               TACGG CAAA CCGTA                TTCATCACGGTAATT  56 225
        sucA 1357325 .. 1357347 +  -2.1  -2.52464   TCTGGTGAATGACGC          GCTGAATATT GACT AATGTTC-GC           TCGCTTGCCGGCCGA  38 10
        odhB 1358629 .. 1358657 + -12.4  -2.99545   GACGTCTAGTAACCC       TTGCCGGGCGCGG CGTG CCGCGCCC-GCAC        TCTGTGCTATGTGGC  76 32
        sucC NONE
        sucD 1360820 .. 1360838 +   -16  -5.24129   TATCTCGACATGTTT             GGCCACCC ATT GGGTGGCC             TTTTTTATGGGCGAA 100 62
        cydA NONE
        cydB NONE
        cydX NONE
        ybgE 1366607 .. 1366629 + -12.1  -4.32402   CCCGATGTCCCCACG           TTATGGGCC CTCAC GGCCCATAA           TTATTTTCATTCCCA  95 45
        ybgC NONE
        tolQ NONE
        tolR NONE
        tolA 1369605 .. 1369622 +  -3.5  -2.80761   GGTAACCAACAGGGA             TTATGTA GTTT TACGTAA              GTTGGTTTGTTAAAA  44 79
        tolB NONE
         pal NONE
        cpoB 1372356 .. 1372390 + -12.2  -2.73364   CGGTTAGAAAAATGA     GCCCAGAAGTTAGTCG ATT TGACCGATTTCTGGGC     TCATTCGCGTGAAGA  74 41
HAP49_RS06475 1372613 .. 1372626 +  -2.3  -2.76189   TCTGAAGTAGCAGTA               ACCAC AACA GTGGG                TGATTAGCTCAGTTG  39 44
HAP49_RS06480 NONE
HAP49_RS06485 NONE
HAP49_RS06490 1373032 .. 1373044 +  -3.4  -3.04144   TGTTTTCCGCGAGTC                GGTT TTTGT AACC                TATTCGCCATCAGCA  44 135
HAP49_RS06495 1373185 .. 1373198 +  -2.3  -2.76189   GTGAAAAATAGCAGT               ACCAC AGCA GTGGG                TGATTAGCTCAGTTG  39 60
HAP49_RS06500 NONE
HAP49_RS06505 1373366 .. 1373379 +  -9.5  -5.07567   CCAATTCAGAAAAAA               GCGCC TTTT GGCGC                TTTTTTCGCATCTGC 100 38
HAP49_RS06510 1373566 .. 1373579 +  -9.5  -5.07567   CCAATTCAGAAAAAA               GCGCC TTTT GGCGC                TTTTTTCGCATCTGC 100 38
HAP49_RS06515 1373766 .. 1373779 +  -9.5  -5.07567   CCAATTCAGAAAAAA               GCGCC TTTT GGCGC                TTTTTTCGCCTCTGC 100 38
        nadA 1375117 .. 1375137 +  -2.5  -2.72511   TCAGCTTAAGATGCA            GGTTAAAGG CAA CGCTTAACC            GTTTAAAAGGATGAC  39 7
HAP49_RS06525 1375890 .. 1375912 +   -17  -3.20723   TCCGTAATAACAGCA           GAGGGCGCCG TGA TGGCGCCCTC           TTGGCTTAGTGGCGA 100 34
        aroG 1381961 .. 1381984 + -12.4  -4.54821   AATCGCAAACAATGA          AAAGGGCCCG ATAG CGGGCCCTTG           TTTTATCCTTGCCAT 100 39
HAP49_RS06550 NONE
HAP49_RS06555 1384456 .. 1384477 + -17.3  -4.72272   AGCAGCAATAAAAAA           GCCCCCGGT GAAA ACCGGGGGC            TTTTTCGTGAACGGG 100 30
HAP49_RS06605 1395913 .. 1395925 +  -4.1   -3.8186   TCAGGTTCTGACGGC                GTGAA ACG TTCGC                TTTACCTGTTGTTGT  57 30
HAP49_RS06610 NONE
HAP49_RS06615 NONE
HAP49_RS06620 NONE
HAP49_RS06625 1399475 .. 1399510 +  -2.4  -2.76492   TACCCCGCGCCGGGA    TGAGGGCGGCTGAAAG GGCA CGTTTGGCCGATCACA     ATTTCGCCTCGCTGG  39 23
HAP49_RS06630 1399789 .. 1399814 + -11.8  -3.19921   CGTTCCCCATCCCGA         TACCCGCCGG CATTCC CCGGCGGGCA          TTCCTCAAGTTATCT  79 42
        modA NONE
        modB NONE
        modC 1402673 .. 1402702 +    -2  -3.88823   CTGATCCATGCTTAA       CCCCTGCGAC TCTACCCATT GACGCAGGCG        TTTGCCTTTGCTGTT  54 240
         pgl 1407116 .. 1407136 +  -9.7   -5.4505   AGACTCGAGTGGAAA            GCGCGGT GCGGTTG ACCGCGC            TTTTTTATTGGCGGG 100 51
HAP49_RS06675 NONE
HAP49_RS06680 1409766 .. 1409776 +  -8.2  -3.24188   CGTGCATAAAGCAGC                 CGGC CGC GCCG                 TTGCTGATGGTCTCC  58 395
        bioB NONE
        bioF NONE
        bioC NONE
        bioD 1414379 .. 1414399 + -15.5   -2.7224   GTTATAAACTCTCAA            TGAGGGAGC TTT GCTCCCTCA            TCCTCTGTCCTGTCC  88 34
        uvrB NONE
HAP49_RS06720 1418775 .. 1418793 +    -3  -3.68988   GACAATCAGCGCATC             GATCATCC GGC GGCCGATC             TTCTCTTCCATCAGC  54 194
        moaA NONE
        moaB NONE
        moaC NONE
        moaD NONE
        moaE 1422716 .. 1422743 + -11.2  -2.72371   GGTACGCTTATAGCA        GGCGAAGCCCCG TTCG CGGGGCTTCGGA         ATCTTGTTTACAACG  71 98
HAP49_RS06755 1423527 .. 1423549 + -12.8    -5.626   TCTGGCGATCAAAAA           GCTCTGCATG TGA TATGCAGAGC           TTTTTTTATGCGATC 100 68
        rhlE 1430972 .. 1430989 +  -9.8  -6.11644   TTGCTCAAAGAGTAA             GCCGCC GATACG GGCGGC              TTTTTTTTTGCCTGG 100 47
HAP49_RS06790 1432068 .. 1432087 +  -4.2  -5.47218   TCTGGCGCGGGCATT            CACCCGTA TCAT TGCGGGTC             TTTTTTTAGCTGGGA  87 69
        dusC 1433045 .. 1433067 + -12.1  -3.68506   TGCCGTAGCTGAAAA           TAAACCCGC GCGCG GCGGGTTTA           TTTAAATCGGTATTA  85 29
HAP49_RS06840 1443289 .. 1443304 +  -2.4  -3.83026   GCAGTACGGGGCCCT              GTGCCG TACG CGCCGC               TTTGATATCCAGCCC  54 260
HAP49_RS06860 1447205 .. 1447217 +  -4.7  -2.60508   CAGCCAACGGAGAAA                CGCCG CTG CGCCG                GGTTTTTCCAGCGTG  43 52
HAP49_RS06870 1448970 .. 1448985 + -11.8  -3.97368   AGCGGATAAAAAAAA              CCGCCC CGGA GGGCGG               TTTGTCGATTCAGCG  90 39
HAP49_RS06885 1452670 .. 1452680 +  -8.2   -4.2679   TCAGCCTTCTGGCGC                 GCGC GAT GCGC                 TTTTCCTGCCCCTTG  79 356
HAP49_RS06900 NONE
HAP49_RS06905 NONE
        pbpG 1457032 .. 1457062 +  -6.9  -3.29461   AAGCTGGTGCGCGCC      GGTG-CGTTGCTGT CCCG ACAGCAGCATCACC       TTGTAACAGCCCTTG  55 144
HAP49_RS06920 1457945 .. 1457958 +  -2.3  -3.50393   TTCATATGTTTATCG               CCATG GCGG CAAGG                TTCTCTGCCGTAGGA  47 86
HAP49_RS06925 1458931 .. 1458943 +  -2.6  -4.10161   GGCGAGAGGTTTTAA                CGTC CACCC GGCG                TTTTCCGAGATCCTC  55 26
HAP49_RS06930 1459959 .. 1459984 + -12.5  -3.03159   CAAGGCATGATGAAA         AGTCTCGCCCC GGAA GGGGCGGGACG          TATTAAGCGCATTAA  79 31
HAP49_RS06970 1466418 .. 1466447 + -23.6  -4.73108   ACGGCTGTTGTTATC       GCCCCCGCGCCG GTGGAA CGGCGCGGGGGC        TTTTGCTTTTATGCG 100 45
HAP49_RS06980 NONE
HAP49_RS06985 NONE
HAP49_RS06990 1470731 .. 1470767 +  -8.7  -3.62096   GGTTGAAGCTGTTGG   TCGGATCGGCGGTGCG GTAGAA CGC-CTGCAGATCCGG    TTTGGCGTGGTACAG  65 157
        ddlA 1474766 .. 1474796 + -13.8  -2.53263   TTCGATCGCTAAACG       CGGCAGGGGGCGGC GGT GCCGCCCCCGTCCA       TCACTTCACCGTCAC  77 29
HAP49_RS07025 1477834 .. 1477858 +  -5.7  -3.07994   AATTCCCTTGGCGAT          GAAACAGAGTG TGG CAAACTGTTTC          TTCACTCCGATTAAA  53 55
        bglX 1480240 .. 1480258 +  -4.5  -3.63068   CTCTTTCACTGCGGT             GGGAGAG GGGCA CTATCCC             TTTCCGCTCATGTCA  54 51
HAP49_RS07035 1481354 .. 1481405 +  -5.1  -3.18383   ATCCCATCATCATCA G-GCTGTACCCCG-CGGCGGCAGGCG GCC CGTC-GCCGTCATCGTTGTACAGCAC TTCGTGGATCACGAT  48 168
HAP49_RS07045 1483195 .. 1483218 +    -3  -3.96148   AAGATCCGCCATGCG          CTG-GCCTTCC GTC GGCGGGCGCGG          TTTATCCTGCGCGCC  56 237
HAP49_RS07055 1484863 .. 1484903 +  -2.4  -5.02074   TCAAGATGATAACGG C-CCGCCGGCGTGGTCAGCC GGC GGCTG-CCGTGCGGTCAGAG TTTTTTCAGCAATGC  70 32
        lsrG NONE
HAP49_RS07100 1492450 .. 1492467 +  -5.5  -3.30771   TTCTGTTCAATACGC             TGTCGGC GGCG GTCGGCA              TTCTGGCGCCTGTGA  53 55
HAP49_RS07105 1493173 .. 1493197 +  -9.2  -4.18197   AAGCCGCTTTCGCTG         GCGGCC-GCGG CGAT CGGCAGGCCGC          TTTTCAATAGCCGAT  79 104
HAP49_RS07115 1494258 .. 1494291 + -10.9  -3.90112   GCGGCCTGGATCTCT     TCCAGCACCGAGCCG ACGT CGGCGCGCTTCTGGA      TTTCGTTGAACCGGC  79 98
HAP49_RS07130 1498104 .. 1498124 +  -3.4  -4.36914   TGTCACCCTGTTAAC           CGTT-TGAT AACA ATCACAACG            TTTTATCAGGGAGGA  61 70
HAP49_RS07135 1499480 .. 1499492 +  -5.5  -3.22113   ACAATCTTCGTCCAG                CGTCA GAG TGGCG                ATTTTATGCACCGGT  51 63
HAP49_RS07155 1502254 .. 1502276 +  -3.4  -4.08216   CGCCCTCAACGTTGG           CCTGGAAC TTCAGGT GTTTCGGG           TTTTCCACCACGTCG  58 345
HAP49_RS07180 1506548 .. 1506562 +  -5.6  -3.45031   AATGCGTTTTACACT               TGGGGC AAA GCCACA               TTCCATTTTTGGCGC  54 119
HAP49_RS07185 1507701 .. 1507724 +  -9.5  -3.04106   ACCATATTTTCCGCC          CGCGCCAGC CGGTGT GCTGACGCG           CTTATCTTTTCTTCA  68 6
HAP49_RS07190 1508288 .. 1508305 + -14.1  -3.61652   CTGATAACGGAAAAA             CGGGGGC CGAG GCCCCCG              TTCGTTATTTCAGGC  89 37
        trpS NONE
        phnC NONE
        phnD 1512438 .. 1512459 + -14.5  -3.67775   GGCCGCCCGAATGAA           GGGGTTCAG CATG CTGAACCCC            TTGTTCCATAACGAT  93 55
        phnE NONE
        phnE NONE
HAP49_RS07225 1514965 .. 1514986 + -12.3  -5.45652   GTTCACCGAACATCA           GGCGCAATC GCAA GGTTGCGCC            TTTTTTATTGCCGCT 100 49
HAP49_RS07230 1518319 .. 1518343 + -22.9  -5.22312   TCCATATCATCCTTC          CGGGGCGGCGA GTG TCGCCGCCCCG          TTTTTTCCTCTGCGT 100 71
        atzF NONE
         uca NONE
HAP49_RS07245 NONE
        urtA NONE
        urtB NONE
        urtC NONE
        urtD NONE
        urtE 1530252 .. 1530274 +    -4  -4.54681   ACGAAAAAATGGGAG           CCGCATGTCT GAA AGTCGTGCCG           TTGTTTTTCCTTGCT  66 41
HAP49_RS07275 1530986 .. 1531028 +  -9.9  -5.09225   TGGCGCTGATAAAAA CGTTG-GGC-GCGGGTGTTGC GTT GCAGCACCTCCAGCCACAGCG TTTTTTGCCTACGGT 100 144
HAP49_RS07305 1535087 .. 1535118 +  -6.6  -3.53343   ATATCCACGCCCTTG      TCGCTGAAGGT-TTG GCG CAGCGCCTCCAGCGA      TTTGAAGCGGCCGTT  57 194
HAP49_RS07315 1536341 .. 1536351 +  -8.2  -3.59979   CGCCGGTTCGATGAT                 GCGC AGC GCGC                 TTTCCCGTCGCGCCA  65 77
HAP49_RS07340 NONE
HAP49_RS07345 1541424 .. 1541451 + -13.5  -3.84961   GGTTCATTTCATCTT        GTCCGGATACG CCCCGC CGTGTCCGGAC         TTTCCTCATTACATC  90 53
HAP49_RS07350 1542764 .. 1542788 + -14.3  -3.70412   CGATTGAAAATGAAA          TGGCGCTCTCC CGT GGACAGCGCCA          TTAATTTATTACGTT  93 34
HAP49_RS07370 NONE
HAP49_RS07375 1547784 .. 1547799 +  -8.2  -3.62096   CTGTCTCACCTGAAA              CCGCCG TCCA TGGCGG               TTTCGCCTAATGCGC  67 362
HAP49_RS07380 NONE
HAP49_RS07385 1550383 .. 1550393 +  -2.4  -3.59979   TTAAGGGATAATGCC                 GAGG TGC CCCC                 TTTGCCGTCGGGAGA  47 30
HAP49_RS07390 NONE
HAP49_RS07395 1552508 .. 1552562 +  -8.5  -2.75844   GCACTTCAACGATCT GATCGCCGGGCAGGCGCTGTCATGAG CGGG CGCATCG-GGCGCCTGCTGCGCGATC CTTTGCCCTGGACGC  59 1
HAP49_RS07400 NONE
HAP49_RS07405 1554350 .. 1554376 +   -10  -4.08767   CCAGCTGTTTGCCGA         CCGCCTCCAGCG CGG CGTTGATGGCGG         TTTTGACCAACTGAC  78 283
HAP49_RS07415 1556105 .. 1556124 +  -4.8  -3.99324   AAGAATCGTTTTTAA            CGGCGGCC CGCA GACCGCCC             TTTGTGATCATCGCC  61 266
HAP49_RS07440 1560127 .. 1560140 +  -2.4  -4.25957   AATCCGCTTGCTATA               TCTC TAATTT GAGA                TTATTTCTCTTATAT  57 107
HAP49_RS07445 NONE
HAP49_RS07450 1561404 .. 1561415 +  -4.4  -4.41137   GGGCAGCACGATGAA                TTCG GTGC CGAA                 TTTGTTCTGGTTCTC  69 158
HAP49_RS07470 1565168 .. 1565182 +  -4.9  -4.85599   CGCCCCGCCGCCTGG               CGGGG AACCA TCCCG               TTTTTCTGAACTGAG  74 44
HAP49_RS07475 NONE
HAP49_RS07480 1565995 .. 1566010 +  -2.4  -2.87564   CAGACGTAACTCGGG              CTGACG TCGT CGGCGG               TCTGTGGGACAATAG  41 32
        dinG 1568733 .. 1568752 +  -6.4  -5.34555   TAGCTGCGAGAAAAA            GGCAGTTA AGCA TATCTGCC             TTTTTTATGCTATGG  90 505
HAP49_RS07495 1569726 .. 1569745 +  -8.6  -5.00616   CGGACGGCCGGCGCG            CCG-GCTGA TGC TCAGCGCGG            TTTTTTCAGCCGGCG  90 18
        prpB NONE
        prpC 1573644 .. 1573664 + -11.1  -2.69834   GCGTTCGTACCGCTG            GATCAGCGC TGA GCGCCGATC            GTTATCGTGTCGTTT  70 14
HAP49_RS07515 1575163 .. 1575191 + -11.7  -2.78816   GGTGATCTGACGCGA        GCGGCGCTGAC AAGCCAC GTCGGCGTCGC        TATGATGGAGGCTCC  74 31
HAP49_RS07520 1575851 .. 1575862 +  -5.8  -3.36273   CTGCAAACTCATTTT                CGAC AGCC GTCG                 TTAATCTTCGCGCAG  57 10
HAP49_RS07530 1578229 .. 1578240 +  -3.6  -2.91668   GGATCTTAAGTAGGC                CGCC GGCG GGTG                 CTTTACTGTCGTCAT  45 28
HAP49_RS07535 NONE
        ybiB NONE
HAP49_RS07545 1581824 .. 1581851 + -15.8  -3.84246   GTTTAAGGCTGACAA        TAAAATCCACGC GGAA GCGTGGATTTTA         TTTAATGGTTAAAAC 100 35
        rlmF 1584950 .. 1584992 +   -10  -4.19879   CTGGCGCTAGGTCTT CAGGTGCTTCGGTATGGGA GCAAAG TCCCATACCGAGG-ATCGG TTTTCCCCGTTTTAT  83 31
HAP49_RS07570 1588150 .. 1588164 +  -4.2  -3.10344   AGCCGGAGCCGCTGG               TCGCGT AAG AGGCGA               TGTGTTAGCTCAACG  48 18
HAP49_RS07575 1589781 .. 1589805 + -14.3  -3.75153   ACTGAGTCTGCCGGA          CGCCGCCTC TGAAAAC GAGGCGGCG          TTTGCCTTCCCCCAC  93 36
HAP49_RS07580 NONE
HAP49_RS07585 NONE
HAP49_RS07590 1592655 .. 1592668 +  -2.3  -4.11692   CGGTGACGTACTCGC               CGGTG TTCA TGCCG                TTTTCGAACTGGATG  59 513
HAP49_RS07625 1598916 .. 1598939 +  -8.8  -4.30177   GGCTCACAGCAGCAG          GCGGTGATGG ATCC TCACCACCGC           TTTCTTGATGTGCTG  83 19
        ompX 1601369 .. 1601384 + -10.4  -6.06529   CGCGCGGATAAAAAA              TCCGCC TTCG GGCGGA               TTTTTTTTATCTGTC 100 84
HAP49_RS07650 1603400 .. 1603421 +  -5.1  -5.00616   GGTGATACTCGCTGC           GGTGGCTTT CGCT AAAGCCGAC            TTTTTTCGCCAGCGC  83 80
HAP49_RS07685 1610105 .. 1610153 +  -8.8  -4.15222   TCGATGCCAAGTGCG GGCGCTTC-ACTGGCTTCAACGC CGCC GCGTTCACGCCATTCGCGGCGCC TTTGTTCCCACCACT  79 73
HAP49_RS07710 NONE
HAP49_RS07715 1615137 .. 1615147 +  -8.2  -3.68073   AAGCGGAAGCAGGCG                 CCGC TTT GCGG                 TTGTTCGATCAGCTG  69 73
HAP49_RS07730 NONE
HAP49_RS07735 1618817 .. 1618849 +  -9.8  -3.29511   GACCAGGGCTACAAC     TGGTTTGGCGGCAGC TGAG GCGGCCGCCGG-CCA      TTCTCCGGCACTCCG  70 8
HAP49_RS07740 NONE
HAP49_RS07745 1619710 .. 1619730 + -16.9  -3.04274   AGCAGGCATAAAAAA            GGGCGTAGC CTG GCTACGCCC            TCTGGTTATTGATTG 100 30
HAP49_RS07755 NONE
        betI NONE
        betB 1624364 .. 1624374 +  -8.2    -4.371   CGCCTGTTGCGGATC                 CGCG TTT CGCG                 TTTTCGTCTCATGCA  79 110
        betA 1626159 .. 1626173 +  -3.5  -4.49337   GCTCTTCCCCAAGGC               GAGGG GGCAA CTCTC               TTTTATCCCTTATCC  66 102
HAP49_RS07790 1630395 .. 1630414 +  -2.8  -4.14392   AGGATAGATAGAGTT            ATTGGCCA AGGA TGGCTAAA             TTTTGAGAGTTGAGA  59 50
HAP49_RS07795 NONE
HAP49_RS07800 NONE
HAP49_RS07805 1634840 .. 1634865 + -16.3   -5.3236   TCGTCAATAGAGAAA         GGGTTCAGTTC TCGC GAACTGAACCC          TTTTTTGTGCCTTAT 100 50
HAP49_RS07835 1641150 .. 1641166 + -15.1  -3.55815   CGTACCTGAGAAAAA              GCCCGCC GCC GGCGGGC              TTTCACCCGCTATTT  91 32
HAP49_RS07845 1643052 .. 1643067 + -11.8  -5.63504   TGTCGCCAATAAAAA              CCCGCC GGCA GGCGGG               TTTTTTTATCCCCTT 100 141
HAP49_RS07850 1644099 .. 1644116 +  -4.7  -3.74693   TCAGGGTGGCGATGG             TGCCGAC GTCG GCCGGCG              TTTCGTGGCGTAACG  58 522
        cynR 1647073 .. 1647100 +  -5.4  -4.59853   AAACAGCACCAGCGC        GATACCGGCGGT GACG ACGGCCGGGAAC         TTTTTACCCGCTTCC  74 198
HAP49_RS07890 1648075 .. 1648092 +  -2.5  -3.36785   GGCGGCGATGATTGC             CGCGAAG TTCC CGCCGCG              TTAATTCAACTATGC  46 4
HAP49_RS07895 1649845 .. 1649864 +   -15  -5.64274   CGCGGCAACGCATCA            GGGCGGGA ATTA TCCCGCCC             TTTTTTTATCCGTCA 100 45
HAP49_RS07910 1652550 .. 1652560 +  -8.2  -4.77036   GCCTTTTTACGGCAG                 CCCG GCT CGGG                 TTTTTAATCGTCGGA  87 8
HAP49_RS07915 NONE
HAP49_RS07920 1655753 .. 1655768 +  -4.6   -3.3422   CACTTTGTCGCCCGC              CACCCG ATCG CCGGTG               CTTTTTAAAGACCTC  52 2
        gsiB 1657384 .. 1657394 +  -5.4  -3.18115   GGGCGGGGGAAGGAA                 TGAG ATG CTCA                 ATTATTTTCTGAAAC  51 74
        gsiC NONE
        gsiD NONE
HAP49_RS07940 NONE
HAP49_RS07945 1659893 .. 1659915 + -19.2  -5.60993   CGGTATTTGAAGAAA           TCCGGGCGGT TTA ACCGCCCGGA           TTTTTTTATCAGCGG 100 31
HAP49_RS07965 1664307 .. 1664338 +  -6.4  -3.05384   AGAGCAAGCAATTCG      CCGGCCGCACGCCCT ATC AGGCCGC-CGGCGGG      TTCCGTCCGCAGGAG  53 214
        folE 1665062 .. 1665077 + -11.8  -4.72272   CGCAAGACGGCAACA              GGCGCC TGCG GGCGCC               TTTTTCATGAGCGGA 100 59
HAP49_RS07975 1666359 .. 1666393 +  -2.8  -3.57144   AGAGCAGCGGGCCAA    TCGGGGTAG-GATAG CGCCAC CGGCCACTACCCCGA     TTTCAGGATCCCGCA  49 104
        galS 1667509 .. 1667525 +  -4.4  -4.07568   ATATTAACATCGCGC              CGTCTA TGCTC TAGGCG              TTTTCCGGCGCAAAG  61 89
        mglB 1668723 .. 1668763 +  -9.6  -2.61695   GAGATCCCGCTAAGA CCCCGCCTGCGGCG-CC AACACCAG GGATACCGCCGGCGGGG  ATGTTTACGACTGCA  65 46
        mglA NONE
        mglC 1671356 .. 1671376 +   -14  -4.85782   CAGCACAGACGACAA            GGCCGGCA AAATA TGCCGGCC            TTTCTTTTTGGGGCA 100 49
        apbC 1682451 .. 1682468 +  -9.8    -5.626   GCGGCAGTGAAAGAA             CCCGGC TTAAGC GCCGGG              TTTTTTTATCGGATA 100 48
         udk 1684039 .. 1684059 +  -3.1  -3.51563   CCAACTATTTGCACC            CCGGCGTAG ACC TTTCGCCCG            TTGTGTGGCAATTTT  49 81
         dcd NONE
        asmA 1686567 .. 1686611 + -14.9   -2.7263   GCTCGACAAGCTGTA ATCCCTCCTGACGCGGGCCGT CTT GCGGCCCGCGTCAGTATCGAC GTTTCCCGCGATAAT  84 25
        dcuC 1688132 .. 1688161 + -12.9  -2.79248   GGCCTCGATGTTAAA       CCTCGTACTCCTCC GGT GGAGGAG-GCGGGG       TGATCTTCACTTTCA  77 62
        galU NONE
        galU 1692182 .. 1692201 +  -6.4  -2.73124   TACGTTTGGCTGGAA            CGTTGTGC CCAG GCATAGCG             CTTTCCAAAATCACC  51 42
HAP49_RS08085 NONE
HAP49_RS08090 NONE
         wzc 1696235 .. 1696260 + -17.7  -3.19202   TTAGCAACACATCAG         TGCCATACCGG GAAA CCGGTATGGCA          TATGTTCATATATTT 100 44
HAP49_RS08100 NONE
HAP49_RS08105 NONE
HAP49_RS08110 NONE
HAP49_RS08115 1701014 .. 1701026 +  -2.7  -3.33671   CAGAAAGTAAGTTCA                CTTTA TCG TGAAG                TTATAAAATAAATAT  46 2
        wbaP NONE
HAP49_RS08125 NONE
HAP49_RS08130 NONE
HAP49_RS08135 1704950 .. 1704973 +  -7.4  -5.82388   TTAAAAATGATAAAA          GCGAGACTGT GTTT ATCGTCTCGC           TTTTTTTTCGGCTTT 100 51
HAP49_RS08145 1709774 .. 1709797 + -15.4   -4.0921   TTAGCCAATAAATAA          TACGGGGTGT GTGA ACACCCCGTA           TTCTTTGAATTTTGT 100 79
HAP49_RS08150 1711894 .. 1711920 +    -3  -2.73159   AATTAAGCCGTGAAT        TGCCTGATGGC TTTATT GCCATCCG-CA         GTTTAAAGGAGTTGG  41 35
HAP49_RS08155 NONE
HAP49_RS08160 1714679 .. 1714697 +   -11  -5.30155   AGCATTAATCTGAAA             GAGCAGCG CTA TGCTGCTC             TTTTTTCGTTAATAC 100 57
HAP49_RS08165 NONE
        cpsG 1717760 .. 1717780 + -15.5  -3.17051   TGAATAGTCTAGGAT            GAGAGCGGT TTT ACCGCTCTC            TCTTCATGGTACGCC  93 53
        galE 1719024 .. 1719034 +  -4.6  -4.15565   TCGCGATTGTTACAC                 GGGT TAA GCCC                 TTTTCGGGTGCTGAG  63 157
HAP49_RS08180 NONE
        cpsG NONE
HAP49_RS08190 NONE
HAP49_RS08195 NONE
HAP49_RS08200 NONE
HAP49_RS08205 1729313 .. 1729350 +   -10  -2.92175   CTAGCTATAGCCTTA   TTCAATGCAGTAGGTG TGATTT CTACTACTGCATTGAA    TCTACTATGTTGAAA  67 47
HAP49_RS08210 NONE
HAP49_RS08215 1731800 .. 1731812 +  -3.4  -2.52015   TTGCCGGCAGGGTCA                TCCT CAGAC AGGA                GTTCCTAAATGTCCA  40 161
        gndA 1733253 .. 1733277 + -11.4   -5.4833   TGAGCGATAAAAAAA         GCCGCCGAGGT TAAC GCC-CGGCGGC          TTTTTTATTGCGTGC 100 51
HAP49_RS08270 1741653 .. 1741670 + -14.1  -5.40072   GTTAACGTCCGTCAG             GCCCCGC GCAT GCGGGGC              TTTTTTTCGCCGGCG 100 36
        speB NONE
HAP49_RS08285 1745257 .. 1745276 + -10.7  -2.64803   TGATTTACTGAGGAG            CAGGGCG CATCGC CGCCCTG             TCGGTTTAACGGTGA  68 75
HAP49_RS08290 1746123 .. 1746159 + -17.2  -3.00946   CGATGCTGTATTGAA    GCTGCGGGGCAGTCGG CGGAT CCGGCTGCCCCGCCGA    TCGTTTCTCCGGCGG 100 27
HAP49_RS08305 1749076 .. 1749089 +  -5.9  -3.37091   AAGTGTTTTTCCAGC               GTGGC GATC GCCGC                TTCGATTTTCGCCAT  52 259
HAP49_RS08320 NONE
HAP49_RS08325 1751815 .. 1751826 +  -7.2  -3.55444   GACCCGGCGCGCATA                GGCG TCGT CGCC                 TTTCAGCCGTACCGA  62 307
HAP49_RS08340 1755838 .. 1755858 + -12.6   -5.0925   GCGGTTCCTGAAAAA            GCCGCAAC CTTCC GTTGCGGC            TTTTTCATTTTCAGC 100 72
HAP49_RS08360 1758979 .. 1759015 + -10.2  -3.05022   GAGACCGCAGGCTTA   ATCAACCAGGCATGGGG CACG CCGCATGCCTGGT-GAC    TCTCTGTGTCAAAGG  71 43
HAP49_RS08365 1759584 .. 1759595 +  -2.2  -3.50251   ATTTTTGATTTTTTT                TCGT ACTG ACGG                 TTAATTCGTTATTGA  47 33
HAP49_RS08370 NONE
HAP49_RS08375 NONE
HAP49_RS08380 NONE
HAP49_RS08385 NONE
HAP49_RS08390 NONE
HAP49_RS08395 NONE
HAP49_RS08400 1766819 .. 1766848 + -15.7  -3.76224   GATCGCTATTGAAAC       GGCGCCGGCCAAGT CAG ACC-GGCCGGCGCC       TTTAGTGCCTCGCCG 100 29
HAP49_RS08425 1773263 .. 1773282 +   -15  -2.80817   GGCGTGGTGTGAAAG            CAGGGGCG GTAA CGCCCCTG             TCATGTTATGCGGTT  84 29
HAP49_RS08440 NONE
         eco 1776320 .. 1776377 +  -2.8  -4.13767   GAATACATGATCTTG TACAAAACCGTTTGAAGAGCATTTTG CGATGA TATGCGGCTCTTCAGGCGGTTTTTTA TTTTCAGGTAGGAAA  59 58
HAP49_RS08450 1777142 .. 1777164 + -14.2  -5.63374   AATGTAAAAAGAAAA           GCAAGGCACC GTA GGTGTCTTGC           TTTTTTTGATATTAA 100 39
HAP49_RS08465 1779965 .. 1779979 +  -8.5  -4.66833   GCGGCAATAAAAAAA               GGCGC ATTAA GCGCC               TTTTTGCCGTTCAAA  86 31
HAP49_RS08475 1780825 .. 1780841 + -13.7  -3.37537   CCGCGGCCGCTAACC              CGCCTGC CGG GCAGGCG              TTGGCTTTTGGGGTG  84 44
        rimK 1781771 .. 1781781 +  -8.2  -3.54424   GCGGTTGACGGGGCG                 GGCG GTG CGCC                 TTTCCCGCCGTGCAA  67 33
HAP49_RS08485 1782582 .. 1782598 + -10.1  -2.57211   GGCGGGTTGCGATGG              CAGCGGC TAT GCTGCTG              ATTCTGCAAAGGGCT  65 228
        potF 1783968 .. 1783985 + -12.7  -4.41241   CATTGCCGTTTTGGG             CCACGGC GCTC GCCGTGG              TTTTGTGCCGCTTTA 100 98
        potG 1785136 .. 1785147 +  -2.2  -2.78463   AAACCGACAGCTGCG                TCGT GTTG ACGG                 TGTAGTAGAGCCGGT  39 9
        potH NONE
        potI NONE
HAP49_RS08510 1787570 .. 1787604 + -11.5  -3.23216   CGCGCAAGTGAGATT     TTAGGCGCGCGGAGT GGTAA ACTCTGCGCCCTTAA     TTCGTCATCCTGAAC  76 30
        rlmC 1788969 .. 1788992 + -14.6   -5.1848   CAGCTTTTTTTTGAA          CTGTTCCCGG ATCA CCGGGGACAG           TTTTTTAAATTCCTT 100 232
HAP49_RS08560 1794507 .. 1794536 +   -15  -2.84467   AACGCCATGCTTTCT       TTTCGCCCCGGC CATTCC GCCGGGGCGACA        TCCTCTTGATTTATC  84 39
HAP49_RS08570 1797556 .. 1797583 +  -7.7  -3.81951   CCATCGCCGCGCCGC        CGC-GCGGCAGC AGCAG GTTGCCGTAGCG        TTTGATCATCTGCAG  65 445
HAP49_RS08585 1800362 .. 1800395 + -10.9  -3.53012   TGGCGCCGACCTTGG     CCGGCAGGG-CGCCGG CGG TCAGCGGCCCTTCCGG     TTTGGCCGCCACCAG  71 145
HAP49_RS08595 NONE
HAP49_RS08600 1803775 .. 1803794 +  -9.2  -3.40403   CCGCGTTGTCATGGT            CTTCGCGC AGCC GCGCGACG             TTATGCTCCAGCGCG  65 314
HAP49_RS08630 1812137 .. 1812170 + -11.6  -3.28712   GGGTAATCTGGCTGG     CGCGCGGCCGGGCGG ACTGA CGGCCCG-CCGGGCG     TTATCGGGCGCAGAA  76 6
        macA 1814425 .. 1814443 +  -2.3  -3.04144   CCGCGGCGGCGTGGA            G-GCCGGC TGAT GGCGGCGC             TGTTGCAGCTGAACG  42 16
        macB 1816398 .. 1816420 +  -9.8  -4.84359   AAAAGGCATAAAAAA           TGCCAGTCAC ACG GCGGCTGGCA           TTTTTATCGCAGTCA 100 43
        clpS NONE
        clpA 1819696 .. 1819713 + -11.3  -5.64274   TCAGGCAAAGAAAAA             GCGATGC TTCG GCATCGC              TTTTTTTATGGGTGA 100 49
         lrp 1826885 .. 1826911 + -11.5  -3.32498   TTATTCATACAGTTT         CGGCGCCGGGG CAGTT TCTCGGCGCTG         TTGCTATGTCAGCTA  76 82
HAP49_RS08695 1830638 .. 1830655 + -14.1  -3.28712   CAATTCAATAAGAAA             GGGCCGC TTAA GCGGCCC              TTGTGCAAAGAAGCG  86 55
        lolA NONE
HAP49_RS08705 1832794 .. 1832804 +  -3.2  -4.31397   TGCGGTAAGGTTAGC                 GGGT ATC ACTC                 TTCTTTTATGCGGCT  61 50
        serS 1834193 .. 1834206 +  -9.5  -5.71712   AATCACTAGAAAAAA               GCGCC TGCG GGCGC                TTTTTTTATGTCGAG 100 47
HAP49_RS08720 1835917 .. 1835931 + -11.4  -5.27938   CTGAGCATAAAAAAA               CCGGCT ATG AGCCGG               TTTTTCTTTGGCGCT 100 37
        ansB 1843743 .. 1843753 +  -8.2  -3.53012   GAGCCTGTCATCACC                 CGGC ACG GCCG                 TTTGCCGCCGACGGG  67 175
        serC 1845038 .. 1845062 + -15.7  -4.13995   CCTTTTGCATTAAAG          CGGCTCCGGCA TTA TTCCGGAGCCG          TTTCGTTTATCAGAA 100 82
        aroA 1846405 .. 1846420 +  -7.5   -4.2687   AATCGTTTATTTTAA              GGCCC CTTTGC GGGCC               TTTATCGTTTTTAAC  74 48
         cmk 1847312 .. 1847345 +   -11   -3.4968   ATGCACAGAAAGTGT     TGGCGTTGCCGCAGC AATAA GC-GCGGCGGCGCTA     TTGGCTTTTTGTCAT  79 6
        rpsA 1849187 .. 1849225 +  -3.6  -2.78679   GCGGCTAAAGGCGAG   TAATGACGGGGGGCGGTC GCT GACCGCCCCAATACGGTA   GTTTAGCTGCAAAGC  44 23
        ihfB 1849580 .. 1849598 + -12.4  -5.78622   GTAAAGAATATAAAA             CGGTGCCT GTA AGGCGCCG             TTTTTTTTCGCCTGC 100 69
HAP49_RS08775 NONE
        msbA NONE
        lpxK 1855212 .. 1855231 +  -4.9  -4.25283   GCAGCGTGGCGTAAT            CATCCGG AAACGC CCGGAAG             TTTTCCTCCAGCAGT  68 390
HAP49_RS08795 1857081 .. 1857096 +  -7.5  -6.12458   ATTAAGTTCAACAAG              CCCGC CTTAGT GCGGG               TTTTTTATTTTTTTG 100 115
HAP49_RS08800 1857412 .. 1857430 +    -3   -3.4178   CTCGCATGGGCTGTC             CGCGGCAG ACG TTATCGCG             TTCTGATCGCATCCT  47 1
HAP49_RS08805 1858902 .. 1858923 +  -6.7  -3.28924   TGTATCACGGCTTTC           TTTTGTGAT TTGT GTCACAAAA            TTCTACGCCGGGATG  58 151
HAP49_RS08810 NONE
        kdsB NONE
HAP49_RS08820 1861406 .. 1861421 + -11.8  -3.54408   GCTTTCGGCCACCAG              CGCCGC AGTG GCGGCG               TTGCTTTGCATGGGG  75 381
        cmoM NONE
        mukF NONE
        mukE NONE
        mukB 1869272 .. 1869291 +   -10  -5.61596   CTAAAAATCCGAAAA            TAGCCGCC GCAG GGTGGCTA             TTTTTTTGTGCGCGT 100 55
        ldtD 1871402 .. 1871417 +  -2.5  -4.68655   TTATGGTTCGGACAG              TGCGC TGCTTT GTGCA               TTTATTTTGACATTC  65 155
HAP49_RS08855 1872021 .. 1872049 + -10.4  -3.51032   GGTGCCCTCAGTGAA       TAACGCCG-CTCC TTGC GGAGGCGGTGTTA        TTGTCGTTGGAGCCT  77 45
HAP49_RS08860 1872741 .. 1872757 + -10.8  -5.75599   GGCCGAAATAATCAA              GGGCGC ATAGA GCGCCC              TTTTTTTATGATTTA 100 53
        pepN 1883412 .. 1883431 +   -15  -4.93547   CGCTAGAGATATCAA            GGGACGGC CTGG GCCGTCCC             TTTTTCATTCATTCA 100 49
        pyrD 1889128 .. 1889154 +  -6.6  -4.14739   ATTATCCGATGTTTA         AGCGATTTCATC GGT GATAAAATCGCC         TTTTAGGGTGAGTGC  71 128
HAP49_RS08925 1889817 .. 1889827 +  -2.4  -4.63932   GATGGTGCCGTTGTC                 GCCC AGC GCGC                 TTTTCTTCAGGGGTG  68 92
       rlmKL NONE
HAP49_RS08940 1895007 .. 1895058 +  -4.9  -3.90922   AACGGCTGACCGTTG CGATGC-CGCCCGCGCGCTGCTGC GGGCG GCATCGACGTGCCGGTGAGCGACG TTATTTAGGAGGAAT  59 32
        pqiA NONE
        pqiB NONE
        pqiC 1898607 .. 1898648 +   -16  -4.42594   TCTAAAATCGTCTAA TCCCTGTCGGCGTGAAAA TCCGTT TTTTCTCGCTGGCAGGGA  TTTCTATTTCATTTC 100 52
         rmf 1899050 .. 1899068 +   -16  -5.38054   AAATAAAAGGAATAA             CCTCCGCC CTT GGCGGAGG             TTTTTGTTTGTGCCG 100 54
        matP 1904282 .. 1904297 + -11.8   -5.4505   GAGGACGAAAAAAAA              CCCCGC ATTG GCGGGG               TTTTTTATTAGGCGA 100 91
HAP49_RS09000 1907122 .. 1907148 + -13.8  -2.79456   GGCATGAGCCAGTAG         TTCAGGGCCC ATCGAGC GGGCCCTGAA         TAATTAGGTTGCCTT  79 0
        helD 1912366 .. 1912384 +  -3.1  -3.86897   TACAGCTGATGCTGC             GCCAGAA TAGTC TTGTGGC             TTTCTACCCACTCCA  56 404
HAP49_RS09030 1913968 .. 1913978 +  -4.6  -3.92602   TGGCGCGATGCCGGG                 CCCT CTC GGGG                 TTTCTCAGGTCTTGG  59 55
        yccX 1916214 .. 1916247 +  -9.4  -4.62069   TTCCTGCGCGGCCAG     CAGCGGCGCCAGGC CCTCAT GCCAGTCGGCGCTG      TTTTTCAGATAGCCC  91 300
HAP49_RS09060 1917398 .. 1917420 + -19.2  -5.46698   CGCCATACATTCTGA           CCCCGTGCTC TCT GAGCACGGGG           TTTTTTGCTTTTGCG 100 36
HAP49_RS09065 1917855 .. 1917875 +  -9.7   -5.4505   CTGTGTTGCTATCAA            CCCGAGC CTGTGGC GCTCGGG            TTTTTTATTCCCGCC 100 52
HAP49_RS09070 1919256 .. 1919286 + -16.8  -3.33671   TGTAATTGCAATTAA       GCCAGGCCTACGCC CAA GGCAAAGGCCTGGC       TTCTGGGGTGACTAT 100 36
HAP49_RS09075 NONE
HAP49_RS09080 NONE
HAP49_RS09085 1923657 .. 1923671 +    -5    -3.137   ACATGGTAATTGGTG               GCGAAT ATT ATTTGC               TTGAATAATATTGGT  51 97
HAP49_RS09090 NONE
HAP49_RS09095 1925053 .. 1925065 +  -4.8  -4.07568   GTCAGTCTTTGAATG                CGCT CATCC AGCG                TTTTGCGCCAGGCGG  63 225
HAP49_RS09105 NONE
        mexI 1929719 .. 1929732 +  -9.5  -5.19261   CGCGTGAAGAATAAA               CCCGC TTCG GCGGG                TTTTTTCGTCAGTTT 100 53
HAP49_RS09135 1933548 .. 1933566 +  -5.3  -4.56597   GCCGAGTGGCTAACG            CTCACGGC AGAC GCC-TGAG             TTTTTGCGCCAGCCG  71 8
HAP49_RS09150 1935721 .. 1935740 +   -15  -4.65895   AGGCGTAAAAAGAAA            GGGGCGGA GAGA TCCGCCCC             TTTTTGCATCACGCG 100 46
HAP49_RS09160 1937957 .. 1937973 +  -5.8  -4.07687   AACGCGAGGCGAACA             GCAGCGG CAGC CCGC-GC              TTTTGCAAGGAACGT  65 407
HAP49_RS09175 1940498 .. 1940518 +    -6  -4.25104   TTGGTGAATGATTCA            CTGCCTGC TTTTC GCTGGCGG            TTTTAATGGCGCGCA  68 157
HAP49_RS09215 1948743 .. 1948763 +  -4.6  -3.41024   CGTGATAAAGCGATT           C-ACCGCGC CCGT GCGCGGCAG            TATTCTGTTGGCACC  52 146
HAP49_RS09220 1949257 .. 1949293 + -10.9  -3.99986   ACTCACCGTTTTCGG    GCACGTTCTGCGGTT ACCGGCC GGCTGCAGAGCGTGC    TTTGCGTTTTATTGC  84 51
HAP49_RS09225 1950282 .. 1950297 +    -9  -3.28712   CATCGCCTCCGCTCC              GGCGAA ATAT TTCGCC               TTATCCGCACCGAGA  63 218
HAP49_RS09250 1955703 .. 1955721 +  -6.7  -4.07687   GATCGGCAGATCGCC            GGCCA-GG AGTT CCGTGGCC             TTTTCCAGCCGCACT  67 183
HAP49_RS09260 NONE
HAP49_RS09265 NONE
HAP49_RS09270 NONE
HAP49_RS09275 1960524 .. 1960554 +  -6.9  -4.25283   TCGATGGTGGCGTCT      CGG-GCGGACTGAT TGCG ATCGGTCTGCACTG       TTTTAATCGACGGCT  73 139
HAP49_RS09285 1961805 .. 1961818 +  -2.4  -4.43307   AGACAGCTATTCTCT               TGCT ACGATA AGCA                TTATTTTCTTCAGGA  60 161
HAP49_RS09290 1962748 .. 1962773 +  -9.1  -3.57418   GTGCGGGTCTGGGGC         GCAACGCTTACT GAC GGTAAGCG-TGC         TTGATTTGCTGAATG  70 501
        uvrY NONE
        uvrC NONE
        pgsA NONE
HAP49_RS09320 1967030 .. 1967057 + -12.8  -4.76274   GTGATTCGGCAGGTA        AGAAAAAGGGGC TTCG GCCCCTTTTTCG         TTTTCTATTCCTTTG 100 63
HAP49_RS09325 NONE
HAP49_RS09330 1967925 .. 1967938 +  -9.5  -6.23317   TAGTAATGTCGTAGA               CCGCC GAGA GGCGG                TTTTTTTGTTTTTGT 100 75
HAP49_RS09340 1970092 .. 1970130 +  -8.8  -4.20368   CGCAATAACCTGCTT   TTTATCGGGCTTCGGGCT ATC AACCCGGAGCCGGATGCA   TTTATCTTCGGCTGC  79 33
HAP49_RS09345 NONE
HAP49_RS09350 1971026 .. 1971070 +  -9.9   -5.5604   CTTTCCCCGCCTGAA CCACCGGCCGCAGGCTTTTTA GGA TAAAAAACCGCCGCCCGGCGG TTTTTTGTTGCTTAC 100 27
         cho NONE
HAP49_RS09390 1979496 .. 1979507 +  -2.2  -4.18058   ATTTGCACTATCGGC                TCCT CGTT GGGA                 TTTTCGGGTGTGCTT  57 91
HAP49_RS09395 NONE
HAP49_RS09400 1980765 .. 1980776 +  -7.2  -6.06529   GCCCCATAAAAAAAA                CCGC CGCG GCGG                 TTTTTTTTATGTCTG 100 248
        mdoG NONE
        mdoH 1989238 .. 1989264 + -22.4  -5.91981   TCGGCAACGCTCAGA         CGGGGAATGCGC ATG GCGCATTCCCCG         TTTTTTTTACCTTTT 100 48
HAP49_RS09430 1989807 .. 1989822 +  -3.2  -3.53012   TGACCGCGGCGTAGA              GGCG CTTCAGCA CGCC               TTTGCCGCGCCAGGC  49 208
        leuA 1992581 .. 1992602 +  -3.6  -3.72576   CGCCACTTCCAACAC           CGAGC-GGC CGGTC GCCAGCGCG           TTTAATGCCGCCAGC  54 120
HAP49_RS09455 NONE
HAP49_RS09460 NONE
HAP49_RS09465 NONE
HAP49_RS09470 1994940 .. 1994958 + -13.1  -3.55444   GCAGGCATAAAAAAA             CCGGCGC ATCGA GCGCCGG             TTTGCGAGATAAAAC  83 31
HAP49_RS09495 2000182 .. 2000208 +  -8.6  -2.62545   GCGGGCGCTGAACGG         GGCGCTGCGC CAGGGCT GCGCGGCGGC         GGTTTTTCGGGTATG  58 30
HAP49_RS09500 2001381 .. 2001400 + -12.1  -6.28967   CTGAGGAAATGAGAA            GCCCGGC CGCCAA GCCGGGC             TTTTTTTTATTTCTC 100 43
HAP49_RS09515 2004385 .. 2004395 +    -4   -3.7574   AGCACCCAAAGTTCA                 GAAA GAT TTTC                 TATTTTACTCCTAAA  54 346
HAP49_RS09520 2005335 .. 2005346 +  -4.4  -3.12803   CAGATCCACTAACAT                TCAG CACA CTGA                 TATTCACTGTGGCTC  48 187
HAP49_RS09565 2011617 .. 2011631 + -12.8  -5.42259   ACAGGCAAGAAAAAA               CCCGCC GAT GGCGGG               TTTTTTTAGGGGTGC 100 48
        rluC 2016803 .. 2016827 +  -5.6  -4.29738   CACGGCCTGGCCGCT         GGCCTGC-CGC AGCT GCGCGCGGGCG          TTTTCCTCGGTATGG  71 329
        yceD NONE
        rpmF NONE
        plsX NONE
HAP49_RS09600 2019916 .. 2019926 +  -2.4  -2.92669   CGGCGGCTTTACCTG                 GGGC TCG GCGC                 TGGTTCGTTTCTGAT  41 1
        fabD NONE
        fabG 2021753 .. 2021766 +  -2.3  -4.25848   TACACTACGAAAACC               ATCGC GAAA GCGAG                TTTTGATAGGAAATT  57 144
        acpP 2022036 .. 2022060 + -10.8  -5.38047   AGTAAGAGAACATAT         C-TAGGCGGTC GTTC GACCGCCTAAG          TTTTTTCTATCCCTA 100 36
        fabF 2023375 .. 2023394 + -13.6  -5.03314   CGAACGCTGATGAAA            GCCCGGTT TTTT AACCGGGC             TTTTTTACGCCTGGC 100 51
        pabC NONE
        mltG NONE
HAP49_RS09635 NONE
        holB NONE
HAP49_RS09645 2028014 .. 2028030 +  -3.6  -4.83169   AAGGGGTGCTCAGAC              ACCCTG AATTG CAGGGG              TTTTTCTCCCCCCCT  72 275
        ptsG 2029563 .. 2029580 + -12.7   -5.4833   CAGGGGAGTTACCAA             GGGAGGC GAAA GCCTCCC              TTTTTTATTGCCTGC 100 47
HAP49_RS09665 2031995 .. 2032016 +  -7.9  -2.61602   GTGATCTTGCGGGCC           GCG-CGGGGC GCG GCCGCGTCGC           TAAATTATAAATTCC  55 37
HAP49_RS09675 2033559 .. 2033586 +  -5.4  -4.49389   GGTCACGTAGATCGG        TTGTACCGGCGG CAGC CCGGCGGCGCGA         TTTTGCTTATCCCAT  71 337
        hinT NONE
HAP49_RS09690 NONE
        lpoB NONE
        thiK NONE
        nagZ 2037683 .. 2037700 + -14.1  -3.28745   GAGCGGAAATGATGA             GGGCCGC GCCC GCGGCCC              TTGGCTTGTTGCGAG  86 65
HAP49_RS09710 2038295 .. 2038324 +  -2.8  -5.28176   TGCCGCGAGCCGCGC       GCCCCGTTTTTC ACCGGC GGAAAGTGCGGC        TTTTTTGTACGTCAA  80 55
HAP49_RS09715 2039922 .. 2039945 + -15.2  -5.60993   GCTTTTGTCGACCAA          CCCGCGCCGG TTCG CCCGCGCGGG           TTTTTTTATGGCGGC 100 45
HAP49_RS09720 2040860 .. 2040879 +  -4.2  -3.29658   ACCCGGTTAAGCGAG            CGGCGTTA ACAT TGACGCGG             GTTTCTGTTTTCTGC  50 90
HAP49_RS09725 2041563 .. 2041581 +   -16  -4.81249   GGAGCGCATAAAAAA             GGTCGGGC ATT GCCCGACC             TTTTTGCATTTCAGG 100 49
HAP49_RS09740 2046637 .. 2046656 +  -6.4  -5.36441   TATGGGGATAAAAAA            GCCTGAAT TTGC GTTCGGGC             TTTTTTGTATGGCGG  90 51
HAP49_RS09760 2049417 .. 2049437 +  -9.7  -5.46706   GGCGAGAATACACAG            CAGCCCC ACTGGTC GGGGCTG            TTTTTATTTTGGGCT 100 44
        ghrA 2050556 .. 2050570 +  -2.1  -2.82327   CTCTGGAAGGAGAAA               CAATG TACCC CGTTG               ATTTGCATATGCACA  39 114
HAP49_RS09770 2051304 .. 2051318 +  -4.2  -3.31905   TTTGTGACATCGTCC               CGGCAA AAT TTTCCG               TATTGTATAAGGCAT  50 34
HAP49_RS09775 2052041 .. 2052051 +  -8.2  -4.56597   GGTTCGGCCGCGCCT                 GCGC GCC GCGC                 TTTTTCACGCAAGGG  82 150
HAP49_RS09780 NONE
HAP49_RS09785 2054839 .. 2054860 + -18.7  -2.78816   GAGTAACGGCGAACA           GCGGGCGGC CTGC GCCGCCCGC            TGTGCTAGCCAATCA 100 35
        dksA 2057385 .. 2057399 +  -7.1  -4.86621   GCCGCGCTCGTCGCG               CAGCC GCCAG GGCTG               TTTTTGGTTGCGGCT  83 309
HAP49_RS09810 2058589 .. 2058624 + -10.3  -4.28049   GTCGTTGTGATTTTG    AGCAAACGCGCGCCG AGTTCC CGGCGCGCGTTCGAG     TTTTCGGGTTTTACC  89 68
         pip 2059660 .. 2059688 + -16.1  -3.41222   GCCGGCAAGTGACGC        AAAAAACCCGCCG TAA CGGCGGGTTTTTC        TATTTAGCCTTCGGC 100 29
        ftnA 2060804 .. 2060830 + -10.1  -6.09133   CAGAGCATCGAAAAA        CCGCGCG-CGGG CGAG CCTGATGCGCGG         TTTTTTTTTACCCTG 100 48
        yobA NONE
        copD NONE
HAP49_RS09840 2062990 .. 2063016 +  -7.4  -5.75478   AGAGCCATTTCCCTA         GACCGAATAT AGGAATC GTATTCGGTC         TTTTTTTGTGTGATT 100 230
HAP49_RS09845 2064012 .. 2064026 +  -5.6  -5.06816   CTGCTATTGTTATTG               CAGCTG CTG CCGCTG               TTTTTGTTGCCGCCT  85 358
HAP49_RS09860 2064920 .. 2064958 + -10.2  -3.47617   AGAACAAGGCGTGAC   TCTCGACAGGCCGGGT AATCGCA ACCCGGCCTGCCATGA   TTATCCCTTTGCCAT  75 27
HAP49_RS09865 2066323 .. 2066340 + -10.5   -5.4833   CGAGCGGTCAAACAA             GGTCGGG TTAG CCCGGCC              TTTTTTATTGCCTGC 100 47
HAP49_RS09870 NONE
HAP49_RS09875 2067621 .. 2067646 + -12.6  -2.90496   ACTTCTAACCTTTAA         CGTCCGGGCGC TTTCT GCGCCCG-ACG         TCGTTTAGGCCGGGC  78 33
HAP49_RS09895 2072426 .. 2072444 +  -2.5  -3.38812   GGGTCAGTGCGGAGG            TAAGCGGT ATGT ACC-CTTA             TGTTCTTGAGGCCGA  46 93
HAP49_RS09900 NONE
HAP49_RS09905 2074986 .. 2075015 +  -8.5  -5.40072   CTGATTGCCGTGAAT       TGCCGCCGGCGCCA GGG TTG-GCCGGCGGTG       TTTTTTTACCGGGGG 100 37
HAP49_RS09910 2075985 .. 2076002 + -12.7   -5.4505   GATCCGCGTTGCCGG             GGCGCTG CTTG CAGCGCC              TTTTTTATTGCGCCA 100 52
HAP49_RS09915 2077253 .. 2077270 +  -4.1  -4.56597   GCCGACGCCCTCTTT             CAGGG TGATCAGC CCCTG              TTTTTGCAACAGCAA  72 417
HAP49_RS09925 2078492 .. 2078507 + -11.8  -3.57792   AATTTTTTGCCTTCA              GCCCCG GCGA CGGGGC               TTTCCCACTGCATCA  82 39
HAP49_RS09930 2079085 .. 2079095 +  -8.2  -3.67597   GCAACGATGGCGGTG                 GCCG CCG CGGC                 TTATTGCGTGAAGAA  70 58
        ebgR 2083954 .. 2083976 +  -3.4  -3.20218   ATTTATTGTGATCCT           GTCGTCATTT GGT AAATATCGAC           TGTAGTTTTTACTAA  46 109
        ebgA NONE
HAP49_RS09955 NONE
HAP49_RS09960 2089213 .. 2089234 +  -2.3  -4.03234   TCTGCGTTTGCATAA           TACATAAGT GAAT ACTAATGTG            TTTGTATGAACGAAA  55 101
HAP49_RS09965 NONE
HAP49_RS09970 NONE
HAP49_RS09975 2091012 .. 2091032 +    -6  -3.33492   AGCGCCTGGGTTTCC            GCCAGCGC GTGCG GCGTAGGC            TTATAGCGTAACTGG  52 518
HAP49_RS10020 2099969 .. 2099982 +  -2.3  -4.11692   GGATACGAAGCTGGC               CATCG TCTC CGCTG                TTTTCCGAGTAGATG  59 405
HAP49_RS10030 2101773 .. 2101790 + -11.3  -4.81249   CCCGAAAACAAAAAA             TCCACGC CGAA GCGTGGA              TTTTTCCGTTTCCGG 100 91
HAP49_RS10040 2104847 .. 2104865 +  -5.2  -5.00884   GCCTGCGCCTTGAAG             CTGTGCAG GCG CTGAACGG             TTTTTTCCAGCCCGT  79 82
        ychH 2106088 .. 2106113 + -13.3  -5.56263   ACTACAAGTAGAAAA         CCCGTTGTTGC TCGC GCACCAACGGG          TTTTTCTTTTCTGCT 100 115
        hemA 2110506 .. 2110518 +  -3.3  -3.81672   TACGCGACAGCCTCG                GGCTG GAT CAGCA                TTAGTTTTCTCTATT  54 9
        prfA NONE
        prmC NONE
HAP49_RS10085 2112893 .. 2112919 +  -2.2  -2.62038   CACGACGAAAATACC         GTTTCTGATGGG ATA CCTATGAGTAGC         ATTGCTGATTTTGAA  39 4
HAP49_RS10090 NONE
        kdsA 2114654 .. 2114669 + -10.4  -5.22039   CATCGCCAAAAAAAA              GCCCGA CGCG TCGGGC               TTTTTTACGTTTAGG 100 46
HAP49_RS10110 2118390 .. 2118414 + -18.5  -3.05384   CCCGCGCGAATAAGC          CGCCCCCGCCG CCA CGGCGGGGGCA          TTGGCTCAGACCGCC 100 28
        lolC NONE
        lolD NONE
        lolE 2126276 .. 2126299 + -13.8  -5.44119   GGACAATAACACCAA          CGGGGAGGCA GCGA TGCCGCCCCG           TTTTTTTAGCCTGGG 100 32
        nagK NONE
        cobB 2128206 .. 2128227 +  -9.3  -3.76413   GCGCCCTGATGGGAT           GGCGGGCGT ATTA GCGCCCGGC            TTTCAGCTTTTGGAA  73 63
HAP49_RS10160 2130192 .. 2130217 + -17.5  -3.53811   ACCGCCTGGTTTGAA         CGACGCGGCCG CTGA CGGCCGCGCCG          TTTAGCGCCAGTGCC 100 11
        pepT 2137787 .. 2137810 + -11.7  -3.91549   CTTTTCTGATCCGCC          CGGCGGG-GC CCAGC GCGCCCGCCG          TTATCTTCTTCTTCT  86 81
HAP49_RS10200 NONE
HAP49_RS10205 NONE
HAP49_RS10210 2141789 .. 2141816 + -12.1  -5.14626   TTAGTGCATTTTTAA        CCCCCAGCAAA CGAAAT TTTGTTGGGGG         TTTTCTTTTGGTGAT 100 58
HAP49_RS10220 2142709 .. 2142734 + -14.1  -5.66989   GAGCACTTCAGAAGC         GCCCAGCAAAC TAGC GTTTGTTGGGC          TTTTTTTGGTATTTC 100 77
HAP49_RS10225 NONE
HAP49_RS10230 2143611 .. 2143631 +  -5.4  -2.84986   GATTTTTAATTCTAA            GATTAGCG ATATA CGCTAAGC            AGTTTTTTATCGATG  48 39
HAP49_RS10235 2144047 .. 2144074 +   -10  -5.55855   TGAAAACAAAGTATA        TGCTCAATAGAT GAGA GTCTATTGGGCA         TTTTCTTTTTTTCAC 100 86
HAP49_RS10240 NONE
HAP49_RS10245 2144971 .. 2144998 + -12.8  -5.55855   CAAAAGTGACCCTTA        CGCCCAATAGAC GAGA GTCTATTGGGCA         TTTTCTTTTTTTCAC 100 135
HAP49_RS10250 NONE
HAP49_RS10255 2145953 .. 2145980 + -12.1  -5.43553   TTAGTGCATCTTTAA        CCCCCAGCAAA CGAAAT TTTGTTGGGGG         TTTTCTTTTTTGGCT 100 58
HAP49_RS10260 2147278 .. 2147295 + -12.7  -3.66018   GCAAGCATAAAAAAA             GCCACCC GATA GGGTGGC              TTGTTCGCGTACTCG  85 31
HAP49_RS10280 2152105 .. 2152118 +  -2.3  -3.76775   AAACTCATACATGTC               GCTGC GGCA GAAGC                TTTCGCTGTATTCGA  52 77
HAP49_RS10290 2154529 .. 2154550 +  -7.3  -3.33315   TGAATTGGTCCGTAT           TACGCCGTCG CTG CG-CGGTGTA           TTCTGCCGCTATTCG  61 61
HAP49_RS10295 NONE
HAP49_RS10300 2155793 .. 2155810 + -14.1  -3.57039   AATAATAAGCAAAAA             GGCGGCC CGTG GGCCGCC              TTGTCGTTGTGGGTC  89 36
         kup 2160063 .. 2160081 + -11.7  -5.06414   TTTTGAATAAAAAAA             CGCTGCG GTAAA CGCAGCG             TTTTTCTTGGGCGGC 100 35
         icd 2164164 .. 2164183 +   -15  -5.64873   AGCGTTAAATGAGAA            CGGGAGCC TTAG GGCTCCCG             TTTTTTATTGTTCCA 100 50
HAP49_RS10345 2165216 .. 2165230 + -12.8  -5.60993   TATTCGTCAAGAAAG               CCGCGC CAT GCGCGG               TTTTTTTATGGGGCG 100 45
        tolA 2168370 .. 2168382 +  -6.3  -3.37053   GCGGTATGCTCATCG                GGAAA AGC TTTCC                TTCCTTGGCGTGTGT  57 480
HAP49_RS10375 2169241 .. 2169257 +  -2.1   -4.7629   TGCGGGAGGTTTACT              CCACCGC GTC GGGATGG              TTTTTGCCTTCCTCG  68 333
HAP49_RS10390 2170775 .. 2170789 +  -7.8  -3.25823   CACTGGCCTTATCCT               TCGCGC TGA GCGTGA               TTGATCTCACCACGC  61 17
HAP49_RS10405 2172922 .. 2172980 +  -5.2   -2.9462   GCCACGCCGGGGCAG CC-CAGCCGGCTG--CGGCCACGATGGCGC TCA GCGCGACCG-GGCCGATCACCTGGCCGAGG TAGTTTCCCTGCATC  46 86
HAP49_RS10415 2174749 .. 2174766 + -14.1  -3.44319   CGGCAGTGCTACCAC             GGGGCCG GACG CGGCCCC              TTATCGTGCCTTGAA  88 43
HAP49_RS10420 2175270 .. 2175280 +  -2.4  -3.01785   GGCATCACATCAGGG                 GCGG CAA CGGC                 TATGATATTTTCCCA  41 49
HAP49_RS10425 2176396 .. 2176419 +  -2.6  -4.37886   GCCAGGCGCCGCCTA          TATTTGAT TAAAAACC ATCAAATA           TTTTATCAAAAATAG  60 71
HAP49_RS10430 NONE
HAP49_RS10435 2179063 .. 2179082 +  -3.4  -3.96298   TGCAATTTATCGTCA            CTCGGCCG CACC CGGTCTGG             TTTCCTTAGTAAATG  54 447
HAP49_RS10445 2179376 .. 2179392 + -15.1  -6.06723   TCGCCGTCACGTCAA              CCGCCCG TAT CGGGCGG              TTTTTTTTTGCGCCG 100 45
HAP49_RS10450 NONE
         qnr NONE
HAP49_RS10465 2182619 .. 2182643 + -11.4   -4.2803   TCGAGAAAAAATAGT         C-GCGGCCGCC TGCG GGCGGCTGCCG          TTTTCCATTCGCATC  91 27
HAP49_RS10470 2183698 .. 2183729 + -15.2  -4.07885   GTCTAAGCGTTAACG      CA-CAGGCCCGGCCA TGA TGACCGGGCCTGCTG      TTTTAGACGCCGATG 100 35
HAP49_RS10495 2189513 .. 2189527 +  -2.7  -3.75665   ACCTAACGACTACCG               CGCGC GTCCG GCGCA               TTTCATCGGCTCTCC  52 49
HAP49_RS10500 2191176 .. 2191192 + -13.7  -4.85782   AGCAATAAATTCACA              GGCGGGA GTT TCCCGCC              TTTCTTTTTGGCGCG 100 33
        yddG 2192143 .. 2192167 +  -3.7  -2.79679   GTTGGCGGGCAACTC         GCGGA-AATT AACGGA AATTATCCGC          TGTCGTCGCAATGTT  44 15
HAP49_RS10510 2192536 .. 2192555 + -12.8  -5.45802   CTGATGCTGATGAAG            GCCGGCGC TGGC GCGTCGGC             TTTTTCTTTTCCACC 100 62
HAP49_RS10515 2193767 .. 2193781 + -12.8  -6.17184   ATCAGAAACAGAAAA               CCCCGC CTG GCGGGG               TTTTTTTTTCGTCAT 100 52
HAP49_RS10525 2194941 .. 2194960 + -12.8  -5.27335   TGTCGAGCGTTATCG            GGCCTCGC TGCG GCGGGGCC             TTTTTATTTGCCAGC 100 45
HAP49_RS10530 NONE
HAP49_RS10555 NONE
HAP49_RS10560 2202407 .. 2202417 +  -2.4  -3.39749   AACGCGGAGTAGAGT                 CCTG CGC CTGG                 TTATGGGATTATTCA  46 39
HAP49_RS10565 2203467 .. 2203496 + -19.3  -2.72344   TGGTTCGCTGTAACC       GCACCGGGTGCGT CGCT GCGCGCCCGGTGC        TCATTCCCACTACCC 100 28
HAP49_RS10585 2208923 .. 2208948 +  -4.5  -3.53444   AGTAGGCCGACTACG         GCGCCGGCGAT CAGC ACCGCCAGCCC          TTTGACCCACAGTGA  51 322
HAP49_RS10605 2211963 .. 2211983 +  -5.3  -3.32498   GGCGAAAACGCGGAT            TGCGCCGCA TTG TGAGCCGCA            TTCATCTGTGGCATG  53 11
HAP49_RS10610 2212968 .. 2212980 +  -7.7  -3.14463   GTTCGCGTTCTGCTT                TTGGC TAC GCCAA                TTAGTGAGCCGCCTT  59 44
HAP49_RS10615 2214180 .. 2214195 + -11.8  -2.89569   GCAGACAGGTATGAA              GGGCGC TGCG GCGCCC               TGGTTGCTTTACAGC  76 66
HAP49_RS10625 2217622 .. 2217641 +  -8.5  -5.68039   GTATCTTATGGATAA            CCGGGGT TGGATT GCCCCGG             TTTTTTTGTGCATTT 100 48
HAP49_RS10630 2219470 .. 2219501 + -10.9  -4.17089   ACCTCGGGCTTCTGT      CGGATCGCCAACC TTCTTC GGTTGGCGATTCA       TTTTCCGCCTTTCAG  88 144
HAP49_RS10640 2220025 .. 2220041 + -15.1  -2.90813   CGGCGGTGAACAGAG              CGCCGGC GTT GCCGGCG              TCATTTCGCGGGATC  86 32
HAP49_RS10645 NONE
HAP49_RS10650 2221489 .. 2221515 + -15.2  -3.33009   CATCGCATAAAAAAA         CGCGCTGTTTCC GAT GAAAACAGCGCG         TTGTCAGCCGTTTTG  90 31
HAP49_RS10705 2234184 .. 2234203 + -12.2  -3.16492   GTGGCAATTACCGAT            GGCGTCAT TATA ATGACGCC             TGTTCATGCCTGTGG  77 53
        proQ NONE
         prc 2237056 .. 2237071 + -10.4  -6.23209   TTCGCCTGTGAAAAA              CGCACC CTCG GGTGCG               TTTTTTTTTGGTTGC 100 50
        htpX 2244218 .. 2244233 + -11.8    -5.626   GAATGAAATGAAAAA              CCCCGG CTTG CCGGGG               TTTTTTTATGGCATG 100 47
HAP49_RS10755 2245189 .. 2245221 +   -12  -3.61946   GGAGCGGCGACTGAC     GCCAGGCCTGCATCG CGCT CGATGT-GGCCCGGC      TCTTTCTATGCCCTC  82 27
        kdgR 2247669 .. 2247694 + -16.9  -4.08557   CGTCATTTCGATGAG         CGAGGCGCTGC CATG GCAGCGCCTTG          TTGTTATTTCGCGCC 100 42
        phnW NONE
HAP49_RS10800 2254512 .. 2254528 + -13.7  -5.32944   CGGGGCGTAAAAAAA              CCGGGGA TTA TCCCCGG              TTTTTTCGTTCTGAG 100 51
HAP49_RS10825 2260278 .. 2260331 +  -5.2  -3.17392   GCCGCCAGCTGCAGC TGCCAGCCGATG-CGCTGCTCGG CGAAGAATT CCGACCAGCGGCGTTGCCAGGCG TTGGGTTGCGGGGTG  48 467
HAP49_RS10860 2265749 .. 2265769 +   -14  -5.07652   CTCTCTTTTGTCGAA            TCGGCCGC TGAAC GCGGCCGA            TTTTGTTTTCGGCAC 100 43
HAP49_RS10865 NONE
HAP49_RS10870 NONE
HAP49_RS10875 2269904 .. 2269929 + -11.9   -4.7497   GAAGAAATAAACCGC         TTAAGGGCTCC GCAA GGGGCCCTTAG          TTTTTACTGAGTGCG 100 31
HAP49_RS10880 2271447 .. 2271468 + -18.7   -3.1158   TGATGTGATCCCCTG           GGCGCGCCG CTTC CGGCGCGCC            TCTTACCCTTCCTTT 100 33
HAP49_RS10885 2272730 .. 2272750 + -18.3  -4.57353   GGGAAATAACGGCAA            CGGGCGCGA CGA TCGCGCCCG            TTTTGTGTGATCAGG 100 32
HAP49_RS10895 2274722 .. 2274736 +  -2.8  -3.49169   CACCACTGTAGATAA               GGAATT ATT AATGCC               TGTTATTACTCTTCC  47 234
        thrS NONE
        infC 2277234 .. 2277259 + -12.5  -4.63218   TTACAAGTAATGGAA         CCCGCGCGGCG CTTG CGCTGTGTGGG          TTTTATTCGCCCAAC 100 44
        rpmI NONE
        rplT 2277922 .. 2277939 + -11.3  -4.56802   CGTAAGTCAGTAGAA             GAGGGAG CTTG CTCCCTC              TTTTAATCTTTGTTT  95 36
        pheM 2278122 .. 2278138 +  -9.4  -5.93252   AAAAATAGCGCCTAA              GCCTCC CTCGT GGAGGC              TTTTTTGTTTTTGGC 100 49
        pheS NONE
        pheT NONE
        ihfA 2282034 .. 2282061 + -12.8  -4.36914   GAGTGACGTGACATC        AAAAAAGGCCGC TTGC GCGGCCTTTTTC         TTTTCTGAGACAAAA 100 39
HAP49_RS10940 2283002 .. 2283055 + -16.1  -3.72893   TAATCCCTGAGTTTA TCGGCGGCTGGTTTTGC-CATCATTG TTG CGATGACGGGCAAGGCCAGCCGCTGC TTTCCTGAGCCACTA 100 38
        btuC NONE
HAP49_RS10950 NONE
        btuD 2285585 .. 2285605 +  -4.7   -3.8512   CGTAGTGAATATAAA            TAGCCGG GTAATCA TCGGCTA            TTATTGTGCTGCCTC  59 76
        arnB NONE
        arnC NONE
        arnA NONE
HAP49_RS10975 NONE
        arnT NONE
        arnE 2292916 .. 2292927 +  -2.2  -2.56596   TTATGCTGGGGATCC                TGCT GATG AGCG                 TGCATTCATGAGGGG  39 3
        arnF 2293400 .. 2293413 +  -3.7  -2.92668   GCGGGAGATAAATTA               ACGCC AAAT GGCGC                TCTCCTTACGTGATG  45 98
HAP49_RS10995 2293953 .. 2293963 +  -2.4  -3.66178   GCGGGTGTACTGGCA                 GGCG CGA CGCA                 TTTAGCCTTAACCCG  50 10
HAP49_RS11000 2295060 .. 2295079 + -12.2  -5.64274   AGGCCTGATGATGAA            GGGATGAG CGTG CTCATCCC             TTTTTTTATCGCTGA 100 44
HAP49_RS11005 2296432 .. 2296460 + -11.8   -3.3785   TCACGCGAAACCTCC       CGCATCCGTTCTG GCGA CAGG-CGGATGCG        TTCTCCCTGCATTCC  80 174
HAP49_RS11010 2297981 .. 2297998 + -14.1  -3.46509   AGCTGAGATGAAAAA             GGGCGCC TCAT GGCGCCC              TTGATGTTATTGACG  88 35
        ppsA 2309803 .. 2309824 + -13.7  -5.27938   GAGGCATTAACGTCG           GGCCGCAGT TAAC GCTGCGGCC            TTTTTATTTCCGAAT 100 56
HAP49_RS11075 NONE
        menI 2315564 .. 2315595 +  -2.8  -5.26875   CATTATCATATAAAC      TGCCGCGTTGCCGA TCAA TCCCCGGCGTGGCG       TTTTTTCATTGCGCG  80 525
        sufA NONE
        sufB 2317938 .. 2317950 + -10.5  -2.87132   ATCGCCGCATTTTTA                GCGCC GTC GGCGC                TATCTGAGGACACAG  70 40
        sufC NONE
        sufD NONE
        sufS NONE
        sufE 2321673 .. 2321705 +  -7.2  -3.66356   CGCCTTCATCCTCAA      GACTCATTGATA CCTTTGCTT TGTCAATGAGTC      TTTACAATTCACAAT  67 48
HAP49_RS11120 2322986 .. 2323007 + -10.9  -5.81412   TTGAGCGGTCGAAGA           GGGGTTCAG CGTG CTGAACCTC            TTTTTTTTGCCTGCC 100 51
HAP49_RS11160 NONE
HAP49_RS11165 2328978 .. 2329002 +   -15  -5.24129   AGAGCAAAAAAAAAA          GCCCCGGCGA AGATG TTGCCGGGGC          TTTTTTATCGGGAAA 100 56
HAP49_RS11180 2333093 .. 2333108 +    -6  -4.56775   CGCCGCCGCAAAATA              CTGCGG TCGG CCGCTG               TTTTTGCGACAGGAT  76 321
        ynhF 2334252 .. 2334276 +  -9.9  -2.52464   CCCGCCAGTTATAAA          AAAGGCGCAGC CTG GCTGCGCCTCA          TCACTTCGGCAAGGC  64 44
HAP49_RS11205 2336687 .. 2336712 + -15.5  -5.61689   GATTATCGCGTAACG         GGCGGCGCCAGT GTA ACTGG-GCCGCC         TTTTTTGTTGGTTTT 100 54
HAP49_RS11240 2343622 .. 2343633 +  -3.6  -3.17075   GGACTTGCCAGCGGC                GGCG ATGG CGTC                 TTCAATTAGCAAGAG  46 5
HAP49_RS11245 2343947 .. 2343961 +  -5.6   -2.7682   GTGGCTTACCGCTTC               CCTGTG CCT CACCGG               CTTGTGTATGCTGGC  48 67
HAP49_RS11250 2344921 .. 2344943 +  -7.6  -5.61596   GGCAGAAAGAGGAAA           GCCGGGCG GCGAAAG CACCCGGC           TTTTTTTATGCCGAT 100 45
HAP49_RS11260 2347731 .. 2347757 + -10.1  -3.93963   CAATTCCTGCAGCGT         GGCGTCCAGCG AACTG TGCTGCACGCC         TTTCTCCGTCATGAT  76 188
        slyA 2351369 .. 2351388 +   -15  -3.63627   GCATCAGAAATAAAA            CCGGAGGC GATT GCCTCCGG             TTTGCCGTGTGCCGC  91 76
        anmK 2353340 .. 2353352 +  -2.6  -3.06162   GGTTTTGCCATTGGG                GGGC CGTTA GCTC                TGTTAGGATAGCCTG  42 16
HAP49_RS11295 NONE
        pdxH 2354461 .. 2354485 +  -8.5  -4.39329   GAAAATCCTCTCTAA          GCGCTGGTG CTGATGC CGCCGGCGC          TTTATTCTATGCGCT  79 46
        tyrS 2355874 .. 2355896 +   -12  -5.40072   ATAGTCCCATATGAA           TGGCCCGAAA TAT TTCCGGGCCA           TTTTTTTAAGCAAAA 100 46
        pdxY 2360103 .. 2360138 +  -8.9   -3.3903   GTAAAACTGTAAGCA    GCATCGGGCCCCGGCG AGAGC CGCCGGGGCT-GAACC    TTACTTCAATCCTTC  69 29
HAP49_RS11340 2363928 .. 2363942 + -12.8  -3.19038   TACATATGGGATTGG               CGCCGC GTG GCGGCG               TTGAGTCGTTTTAAC  73 227
HAP49_RS11350 2364849 .. 2364870 +  -7.9  -3.03771   GAGGTTGACGCCTTC           GCTGGCGGC AATG GTGGCCAGC            TGTTCGAGGATCTCC  54 225
HAP49_RS11360 2366430 .. 2366475 + -10.3  -3.89212   CGGCGGTGCCGGTGC CGAGACGGGC-GCCGACGCTGT CAT ACAACGGCGGCCGCCGGTCATG TTTCATCTCTACCTG  76 382
HAP49_RS11375 2368671 .. 2368706 +  -2.4  -2.60075   GTCAGTTCATTAAAC    TCAGTGCGCAAACCGC AGGA GCCGTATTCGCGATGA     CTTCATTACCCAACA  39 188
HAP49_RS11380 2370822 .. 2370843 +   -13  -5.28942   TGCGGCATAAAAAAA           CACCGGGG CGTTAA CCCCGGTG            TTTTTATTTACGCTC 100 51
HAP49_RS11410 2377363 .. 2377385 + -14.8  -5.09426   TTGTCTTCCGTTTCC           GCCGCCAGCG ATT CTCTGGCGGC           TTTTTTGGCCTTGGC 100 78
HAP49_RS11435 2382664 .. 2382684 + -10.3  -4.64657   CCGCCCATTTCTCTG            TGCCCGGCG CAA CGTCGGGCC            TTTTTACGACTTTAC 100 43
HAP49_RS11440 2383765 .. 2383798 +  -4.3  -3.02144   CGCGTCGAGCAGAAA     GTCGGCGCGCTCATC GGGT GAGGCGCGCGGCAGC      TCTTGCAGCCGATAG  45 67
HAP49_RS11460 NONE
HAP49_RS11465 2387336 .. 2387373 + -13.6  -3.14132   CCGTCTGTTCAGGCG  TAAC-CGA-GGGGCGGGC AGAG GCTCGCCCCCTCGCGTTA   TTGCTCGCCCAGCAC  81 23
HAP49_RS11480 2391773 .. 2391824 +  -3.5  -3.36749   CTGCGGCGTGCGCAG GC-GCGCGGCG-ACCGCCGGCGG-GC AGA GCACCGTCAGCGGCGCGTCGAACAGC TTGATATTGCAGGTG  46 379
      blaSRT 2394071 .. 2394093 +    -9  -3.35679   GATAGTCAGGCGAAG           CGACCAGCAC CCG GCGCTGGCCG           TTATCGATCGGCACG  63 456
HAP49_RS11500 2395840 .. 2395857 + -14.1  -3.81879   CGGCGTAAATAAAAA             GGGCCCC GCAG GGGGCCC              TTGTTAGGTTTTCAG  93 33
HAP49_RS11515 2399524 .. 2399536 +  -6.2  -3.30474   TCAATAATTTTAATG                CGCG TCATC CGCG                TTAATGGTTATCCAG  55 9
        fumC 2401185 .. 2401208 + -10.2  -4.07687   ATGGCGTCATGCCTA          AATGGGGCGC GGTT GCGCCCCGTC           TTTTCAAGCCAACAT  84 40
HAP49_RS11530 NONE
HAP49_RS11535 2403564 .. 2403598 +  -7.7  -3.33261   TTGCGGAGCAATAGC     GGCACGCTGCTGCCA TAAAC TGTCAGTCGCGCGCC     TTAGTCTGTGCCTAT  61 27
HAP49_RS11540 2404186 .. 2404202 +  -4.3  -4.78107   ATCAGCGGTAGCGGG              CAGGGGT GCT GCACCTG              TTTTTGCTGCTGCTG  75 190
HAP49_RS11550 2407112 .. 2407130 +  -4.4  -3.14132   CGCCAGAAAGGGCGG             CGCCGGTC GCT GGATGGCG             TTGATAAAGCGGGCG  48 59
HAP49_RS11555 2408513 .. 2408533 + -11.1  -4.74103   GCTCTGGCATGACGA            GCCGCGG CTAACCA CCGCGGC            TTTTTCCATTCACAG 100 47
HAP49_RS11565 2410824 .. 2410834 +  -4.6  -3.21747   CCGCGGCGGCGCAGT                 CGCT GAT GGCG                 TTGATGCTGAAATGA  50 0
HAP49_RS11570 2412317 .. 2412334 + -12.7   -2.6563   TTCCGAAAGACTTCT             TCGCCGC CGGT GCGGCGA              TACATTGTTAACGGG  76 116
        bioD 2413437 .. 2413456 +  -4.2  -4.09685   GCGCGTAGTTAAGGG            GCGGGATGC CCA GCA-CGCGC            TTTTGCACGATGGCC  61 423
HAP49_RS11585 2414323 .. 2414347 + -14.3  -3.05596   GGGCGCGCCCGACCC          GCTGCTGGCGA GGA TCGCCAACAGC          TTGCATACCAGGATC  78 346
HAP49_RS11615 2420896 .. 2420906 +  -8.2  -3.16742   TGCGCGCCCTGGGTA                 GCCG ATG CGGC                 TTACTGCGCGTTGGA  62 65
HAP49_RS11630 2422165 .. 2422192 +  -8.3  -3.01712   CGGGAGTTGCCTCCC        GCCGTCGCGGC TCAGGC GCCGCGGTGGA         TGTTCAGCCCGGCGA  60 51
        guaD 2429450 .. 2429467 +  -7.7  -2.64962   GTGGTTTATCAGGCG             GCGCGCTG ACA CAGC-CGC             ATTCATTCCTGGTAT  55 17
HAP49_RS11665 2430363 .. 2430373 +  -2.6  -2.80994   GCGCATTCAAGCGTT                 TATA GGT TATA                 TCTAATCGAGTTAAC  39 10
         dcp 2432776 .. 2432792 + -11.5  -3.61527   GGTAAGCAAACAAAA              GGGCGCG TTA TGCGCCC              TTCGTCTTTTTGGCT  79 55
HAP49_RS11700 2438988 .. 2439008 +  -3.1  -3.14132   GCGCCGGAGGCGTCG            CGCGTGCGC CGG GCGTAATCG            TTGCTGCCAACGGCG  44 8
HAP49_RS11705 2439551 .. 2439564 +  -4.5  -3.10715   CACCGGCTGATTCGC               CCG-CG CAA CGTCGG               TTGCCTGGTGGTCGG  48 31
HAP49_RS11710 NONE
HAP49_RS11715 2444199 .. 2444243 + -16.4  -3.01924   ACGATGCCGATATCC GCCGCCC-GTTCGGCGATCGC CTGC GCGATGGCCGGGCTGGGCAGC TCTTCCAGCGCGATA  84 486
HAP49_RS11725 NONE
HAP49_RS11730 NONE
HAP49_RS11735 NONE
HAP49_RS11740 2449785 .. 2449796 +  -2.2  -3.84451   AAGGCTATTTTTGCT                GCTCG CTT CG-GC                TTTCAATTTACGGCG  53 112
HAP49_RS11745 NONE
HAP49_RS11750 2451924 .. 2451945 + -11.6  -5.44721   ACAAGAGTTGTTTTG           CCGAAGGC AGTGAC GCCTTCGG            TTTTTTTGGAGTCAT 100 185
HAP49_RS11755 NONE
HAP49_RS11760 NONE
HAP49_RS11765 2456341 .. 2456356 +  -7.5   -3.5944   GGTGCCAGTGCAATT              CCCGG ATCGCG CCGGG               TTTCACGATCTCGAT  62 404
HAP49_RS11780 NONE
HAP49_RS11785 2459715 .. 2459769 +  -3.3  -3.38072   CCAGGCGACCGGCAG CGCGTGCAGCGCCAGCGGCTGCAGGC ATTC GGCTG-AGGCGCTGAAGCGGAAGGCG TTGGTGTTGGCTACC  46 180
HAP49_RS11795 2461970 .. 2461983 +  -9.5  -5.42259   AAGGAAAAGAGAAAA               GGGCC GAAC GGCCC                TTTTTTTACGACTGG 100 49
HAP49_RS11810 NONE
HAP49_RS11815 NONE
HAP49_RS11820 2469124 .. 2469141 +  -4.1  -3.41125   AAATCTGCGTTAGAG             CCGAC AATTCTCA GTCGG              TTCTAAATATCTAGA  50 69
HAP49_RS11825 NONE
HAP49_RS11830 2470103 .. 2470120 +  -6.3  -5.01811   TTCACTGTATTTAGA             GCCAAAG AGTT TTTTGGC              TTTTTGATTTCATAG  81 27
HAP49_RS11835 NONE
HAP49_RS11840 NONE
HAP49_RS11845 2471684 .. 2471696 +  -4.7  -3.08679   GCAGGCATTGGCGCT                GCCGG TTA CCGGA                TCTTCAATCAAAACA  47 289
HAP49_RS11860 NONE
HAP49_RS11865 2475190 .. 2475212 +  -9.9  -2.64803   AACAGTGAAACGAAC          GGGC-ATCGC GCTG GCGATAGCCC           TGACTTTCCCCCTGG  65 357
HAP49_RS11870 NONE
HAP49_RS11875 2476219 .. 2476277 + -12.5  -3.55801   CGAGTAGGCTACGGC CGCCTTTGGCAGTGGTGGTACGGTTGAT GGGC GTCA-TTGTCCCGCCACTGCTTGAGGCG TTTCCCCACATTCCT  83 121
HAP49_RS11885 NONE
HAP49_RS11890 2479318 .. 2479344 +  -2.8  -2.66695   GTGTTGCCGCTCAAC         GCCGGCACCC GCCAATA GCGAGCTGGC         ATATTTCGTCCGCCA  40 8
HAP49_RS11895 2480079 .. 2480096 +  -7.7  -4.07568   TGCTGAACATGAACG             CCATGCCG TTG CGGC-TGG             TTTTACGGCAAACGA  70 227
        mrdA 2482407 .. 2482419 +  -3.3  -2.72235   CGACAGCGCGGATGT                GCAAC GGT GATGC                GGTTTGTTTTTACTT  41 16
HAP49_RS11910 2484520 .. 2484557 + -10.5  -4.07568   GAAAATACCATTTAT   TGCTGCCGG-AGGACTGG GTG CCGGTCCAGCCGGTGGCG   TTTTCCACGCCGCCC  78 303
HAP49_RS11920 2487690 .. 2487726 +  -3.4    -3.727   ACTTCCGATGCAGGT   TAATGAATAATA--AAGC TGC GCTTAATGTTATTCATTA   TTTCCCTGTGCTGAG  52 43
HAP49_RS11930 2488654 .. 2488703 +   -10  -2.62642   TGACAGAAATCAGTA CTGAA-GCCTGACCTGCCGCCGCC GCCG GGCGGGGGCAGGTT-GACATTCCG CTTATCCCTACTCAT  65 15
HAP49_RS11935 2489357 .. 2489367 +  -3.2  -4.14739   TCGCATCAAGTGTGA                 TGTG GCT CACG                 TTTTAGACTGCCTCC  59 116
HAP49_RS11940 2490059 .. 2490069 +  -6.8  -4.07885   TCACCCGCAGCGGCG                 CGTC GCT GACG                 TTTTGCAACACGGTG  67 487
HAP49_RS11975 NONE
HAP49_RS11980 2498589 .. 2498599 +  -2.4  -4.59853   AGGCGTCATAATAGG                 CCTG CGT CTGG                 TTTTTGAAGCCTTGC  68 104
HAP49_RS11990 NONE
HAP49_RS11995 2501353 .. 2501389 + -11.7  -3.20709   CTTCCGCCATGCTAA    CCCCTGACATAGGCT TACCCGC AGTCTATGTCAGGAG    TGTTCATCATGTTAT  79 94
HAP49_RS12000 2502968 .. 2502998 +  -7.5  -3.14344   AGCGCTGCACGGTCT       GGCCGCCGTCG ATATACAGG TGACGGCAGCC       TTGCTCGGCCAACTG  56 201
HAP49_RS12040 2508496 .. 2508506 +  -6.8  -3.64703   GGAAGCTGTGATCGC                 GCAG CCG CTGC                 TTTAACTGCGCCGCA  59 94
HAP49_RS12055 NONE
HAP49_RS12060 2512419 .. 2512432 +  -3.7  -3.17825   CGGCTGCCAACCTCA               AGGCG ATCG CGCCG                TCTGTTAATGGTTTT  46 68
        adhP 2513605 .. 2513628 + -16.8  -3.50853   GGCCATGCGAAAAAA          GAAGGCCACC TGCG GGTGGCCTTC           TTGTCATTACGCCGG 100 40
HAP49_RS12075 2517243 .. 2517261 + -17.4  -3.23045   ATTGAGCGGCGATAA             GGCCCCGC TGC GCGGGGCC             TGTTGCTCTCTCAAT 100 50
HAP49_RS12085 2519655 .. 2519699 +  -9.9  -4.56775   GCACAGTGTTTGGCG CTGTTGCTCGGTTTCCACGCC TTC GGCGATGATATCGATCGACAG TTTTTGACCGAGAAT  95 145
HAP49_RS12095 2524022 .. 2524043 + -13.7  -3.59979   CGTTTAAAATGGCAA           CGGTGGGCG ATGA TGCCCACCG            TTTCACATGGGCCAC  86 34
HAP49_RS12100 2524689 .. 2524720 +    -8  -4.63218   CAATCTCCCGCGCGC      GTTGCAACGGCTCG GCGC TGAGGCGTTGCAAG       TTTTGTTGCAGCGCC  83 288
HAP49_RS12145 2533159 .. 2533186 +  -3.2  -3.40403   TCGGCGGCGCCGATC        TCGCGCTGCTGC GCCA GCGGATGTGCGG         TTCTCATCACGCCGA  49 421
HAP49_RS12170 2539017 .. 2539035 +  -4.4  -4.13767   TTTTCGATGCGCTCG             CCGCGGCA CGG TGCGCCGG             TTTTCACATGGCCGG  63 119
HAP49_RS12190 NONE
HAP49_RS12195 2544713 .. 2544732 +  -4.2  -4.07568   CTATACCGCTGACTC            GCTCATCG CCGA TGATGCGC             TTTTAAGAGCACAAC  61 29
HAP49_RS12200 2545371 .. 2545387 +  -9.3  -3.02144   ACAGGTAAGGTACGA              CGGCCAG CCC CAGGCCG              TCTTCGGCCGCCTGA  60 226
HAP49_RS12210 2547427 .. 2547442 +  -3.2  -3.07816   CGACAACATTTGAAA              TGAGGC ACGG GCATCA               TTAAATGAATGGAAC  44 23
HAP49_RS12215 2548665 .. 2548675 +  -6.8  -3.02324   ATCCGTTCGCCAAGA                 GGCT GCG AGCC                 TGTGCTTTCGGTAGG  54 191
HAP49_RS12220 2549129 .. 2549167 +  -8.1  -3.18383   GCTCTCCCTATCCCT  TCAGCAGTAAGC-CGTCC CCCA GGCCGAGCTACCTGCTGA   TTGATGCGTACACCT  64 76
HAP49_RS12225 2550211 .. 2550244 +  -6.7  -3.48288   TGGCGTTTCGCCTTC     GCGCTTTACGCTATA GCCT TATGGCATAGCGCGC      TTCTCCTATAGATTG  60 10
HAP49_RS12230 2552265 .. 2552280 +  -3.2   -3.6682   CGATAATGTCCTTAA              GTTCTC TGGA GAGATC               TTTCACTAAATCAGC  51 442
HAP49_RS12255 2557573 .. 2557585 +  -4.1  -5.03314   CGCGTTTAGACAACG                TTCGC ACG GTGAA                TTTTTTACCAATGAC  81 260
HAP49_RS12265 2559004 .. 2559020 +  -6.5  -3.72765   CCAGCAATAAATGCA              TGCACGT GAT GCGTGCG              TTTGCCGTTTCCCTT  64 439
HAP49_RS12275 2560292 .. 2560304 +  -9.1  -3.90744   TTCTGCCGCCAGCGC                CACCG TTG CGGTG                TTCTTTGCCAGCACC  74 483
HAP49_RS12285 NONE
HAP49_RS12290 2562286 .. 2562320 + -14.5  -2.61912   TCAGCGCTAAATAAC    GTTAACGTGCAGGTTC CGAA GAACCTGCACGT-GAC     ATTGTCACTCAATGC  81 27
HAP49_RS12300 2563704 .. 2563716 +  -4.1  -4.07885   AATTAACCCCCGTAT                TTACC GAT GGTGA                TTTTCGCCAGGCCTC  59 165
HAP49_RS12305 NONE
HAP49_RS12310 2566503 .. 2566513 +  -2.4   -4.2679   ATTCGCAAAATTGCG                 CCAG CGT CAGG                 TTTTCATGCAGCTTA  62 371
HAP49_RS12320 2567941 .. 2567985 +   -10  -3.53444   AAATAGCGCGAGCCG CTCC-CCTTATCG-CGGCGCTG ACA CAGCGCCGCCCCCAAGGAGGAG TTTGGCGCCCAATCC  74 35
HAP49_RS12370 2586295 .. 2586310 +  -8.2  -3.62096   CTGTCTCACCTGAAA              CCGCCG TCCA TGGCGG               TTTCGCCTAATGCGC  67 268
HAP49_RS12385 2590874 .. 2590897 + -13.8  -4.25104   GGTTGATGCCCGTAT          CCCGGCCTGC CCCG GCAGGCCGGA           TTTTCCTCAGCGCAA 100 35
HAP49_RS12395 2593560 .. 2593591 + -12.3  -4.45261   AATTGTCTGACTCTG     CCCGCCGCGGCGAGT TCGG GC-CGCCGCG-CGGG      TTTTCCGTTTCTTTA 100 438
HAP49_RS12425 2602110 .. 2602129 + -10.6  -3.79113   CGGCGTTTAGCGCCT            GCCGGGCC AAAC GCCCCGGC             TTGTTATGCCAGCAT  80 95
HAP49_RS12445 2606051 .. 2606082 +  -6.4  -2.54896   ACGTCACGATTTGCT      ACTCTGGTCAGGCG ACCC CGCCTGACCGCTGC       TACCTTCAATAAAGC  49 47
         ggt 2607873 .. 2607900 + -14.1  -2.71681   AAAAGTAACGCCCCG        GCGGCCCGCCT CAGGTT AGACGGGCCGC         TACTTCCCCGCATTG  82 33
HAP49_RS12455 2610377 .. 2610406 +  -9.4  -4.84359   TTAGTAGGAATGCTT      TGGCCCCC-A-CAG GCAT CTGATTGGGGGCCA       TTTTTATCCGACTAC  91 37
HAP49_RS12470 2614246 .. 2614265 + -13.6   -4.5442   GTCACAAAAAAATAA            GGGAAGGC GCAA GCCTTCCC             TTTTGTCATTCACCG 100 194
         tet 2621207 .. 2621233 +  -8.7  -3.73336   TTGAATGCCGTTTCA         TGGCGTTACGC CCAGC GCGTATCGCTA         TTGTTCACTTCGCCT  73 167
HAP49_RS12505 2622367 .. 2622387 +  -9.6  -5.42605   CGTCGTGAACCCTGG            GCCGCCCC TGACT GGTGCGGC            TTTTCTTTTTGTTCG 100 173
HAP49_RS12510 2623232 .. 2623243 +  -4.4   -3.8709   GGCTGTTTTTTTATT                GTGA CAAA TCAC                 TTTGTCCGGCGATTT  59 45
HAP49_RS12515 2624797 .. 2624813 + -13.7  -5.08367   ACGGCAAACCAATCA              GGGGCGA TGT TCGCCCC              TTTTTACTTTATATT 100 45
HAP49_RS12555 2631381 .. 2631394 +  -6.7  -3.36289   TCAAACCGGCACTAG               GAGGA GTGC TCCTC                TTCATTGGCCTGATA  60 78
HAP49_RS12565 2636156 .. 2636174 +   -16  -5.34055   TTGTCATCAATCTCA             CAGGCCGC CCG GCGGCCTG             TTTTTTCCTCTTTGT 100 195
HAP49_RS12570 2637294 .. 2637308 +  -5.7  -2.58861   GCGCGCCCGGATGTT               GTGCA CGTCT TGCAC               CTTATCCCCCTGCTC  50 151
HAP49_RS12600 NONE
HAP49_RS12605 NONE
HAP49_RS12610 2646146 .. 2646165 + -12.1  -3.28791   GGCTGACTCACTTAA            GGCCGGG CTGCTC CCCGGCC             TTCTCAGCGGCAAAT  79 35
HAP49_RS12620 2648159 .. 2648173 + -12.8  -5.51165   CGCCGCTCGACAACA               GGCCCG TTA CGGGCC               TTTTTTTCGCCTTTT 100 49
        fusA 2650483 .. 2650503 + -15.4  -3.08471   AAGCGTTAACCCTCG            CGCCCGCC TTCGC GGCGGGCG            TTACCTCGGCTTGTC  89 32
HAP49_RS12640 2654055 .. 2654071 + -15.1  -5.86061   GATGAAGAGCCAAAC              GCCCCGC AAT GCGGGGC              TTTTTTTTACTCGCC 100 51
HAP49_RS12660 2657942 .. 2657970 + -12.5  -3.74077   TCTCCAAGACACTTC        CCGGCTGGAAATC AGA GATTTTCATCCGG        TTTGCGTCTGTCGGA  81 288
HAP49_RS12690 2666231 .. 2666246 +  -3.2  -3.10597   GCCACGCGCGCATAA              GGACAT CACG ATGACC               GTTTTGACTCCCCCC  44 26
HAP49_RS12695 NONE
HAP49_RS12700 2668103 .. 2668113 +  -2.4  -2.87564   CAGGCCTATCTGGGA                 GGCG GCG CGCA                 TGTCTGAAGCCCTGC  41 8
HAP49_RS12705 NONE
HAP49_RS12710 NONE
HAP49_RS12715 NONE
HAP49_RS12720 2671820 .. 2671837 +  -8.5  -3.71284   CCCGCCTGTTCTATA             TTCAACC ATAT GGTTGAA              TTATCTTCCTCACAG  70 100
HAP49_RS12725 NONE
HAP49_RS12730 2672928 .. 2672938 +  -3.2  -3.71848   TTCTGCTCCATCAGC                 TTGG CGC CCAG                 TTCTTCCTGCAGCAG  54 240
        nudI 2676727 .. 2676741 +  -5.6  -3.55262   TTGTTGTAACAGTTT               GAGCGA TTA TCGCCC               TATTTCCTTCACATT  56 32
        pbpG 2677732 .. 2677748 +  -5.8  -2.71125   CAATCAGTATTAAGG              CGTGCG CCGCC CGCATG              GTATTTGTCAGGCAT  50 107
HAP49_RS12760 2678936 .. 2678947 +  -7.2  -3.55444   GCTGCGCCATCAGCT                GCGC GGCG GCGC                 TTTCCGACCTCACAG  62 186
HAP49_RS12770 NONE
HAP49_RS12775 NONE
HAP49_RS12780 2681989 .. 2682006 +  -4.1  -6.01725   GGGCAGCATGCCCGC             CCCTGAT AAAT ATCAGCG              TTTTTTCTTTTTGTT 100 58
HAP49_RS12805 NONE
HAP49_RS12810 NONE
HAP49_RS12815 NONE
        ugpC NONE
HAP49_RS12825 NONE
HAP49_RS12830 2694168 .. 2694197 +  -7.1  -3.57792   AAAAAAACAGTGAAA       GCC-CGGCGGTTGT CGA GCGATCGCTGCGGC       TTTCGGCATCGATGG  62 41
HAP49_RS12835 NONE
HAP49_RS12840 NONE
HAP49_RS12845 2697568 .. 2697579 +  -4.4  -5.26875   CTTATTTGATGAAAA                CAAG CGCG CTTG                 TTTTTTAATTGGCAG  84 279
HAP49_RS12850 2697997 .. 2698009 +  -3.5  -3.86346   TTGATGACTTATAAA                TTTAT TTT ATAAA                TTTATCGCACAATAA  57 90
         ogt 2698749 .. 2698763 + -11.4  -3.18033   CCCAACGCCACGCTC               GTGCCC GCA GGGCAC               TATTAATAACTTGTG  74 98
HAP49_RS12860 2699725 .. 2699768 + -10.4  -3.34232   GTCAACGCCTGATCC CCCCGCCGGATCAAC-ATTTC ACC GAAATTGTTGATCCGGCACGC TTCCGTTGTTGTTCT  75 29
        uspE 2700829 .. 2700850 + -17.3  -5.38326   TCGCTCATAAAGAAA           CGGGCCGCT GAAA AGCGGCCCG            TTTTTCTTTGGTTGC 100 44
HAP49_RS12885 2705317 .. 2705338 +   -13  -5.08088   TTTTAGGTTTACCAT           CGGGCAGC CCTTGA GCTGCCCG            TTTTTATTGCCGCTT 100 48
HAP49_RS12890 2706944 .. 2706964 + -12.6  -4.50241   AAAGTGCCCCGTCAA            TGCGGCTG CCCGT CAGCCGCA            TTTTGCTTCCTCTTT 100 39
HAP49_RS12895 NONE
HAP49_RS12900 2708143 .. 2708169 +    -8  -4.08216   CCTAACCATGAACGG        GC-GGCCGGGT CGGTAC ACCCGGTCAGC         TTTTAGGGGGAATGG  74 105
        folM NONE
        rstA NONE
        rstB 2711573 .. 2711596 +  -3.8  -3.50853   TTCAGTTTAAAAGCC          GATCTGGC ATAATGCC GCCAGACC           TTCTCATTGGAGCCG  52 14
HAP49_RS12925 2713127 .. 2713145 + -17.4  -3.05597   CCTGTAATCTCCCCT             GGCGCGGC CCT GCCGCGCC             CTTTTCCCGCCTGCA 100 34
         asr 2714695 .. 2714712 + -12.7  -5.14563   GCTTGACGTGTACGA             CACCCGG TTCG CCGGGTG              TTTTTTCATCGGGGG 100 69
HAP49_RS12940 2715763 .. 2715790 + -13.5  -4.21811   CGGGCAAGTAGCTCT        C-GCAACGGCGC ATCAA GCGCCGTTGCTG        TTTATCTGTTCCCTG 100 30
        azoR 2720713 .. 2720730 + -14.1  -6.32017   TATCCGTATCATTTA             GCGCGCC AGAC GGCGCGC              TTTTTTTTATTTCTT 100 121
HAP49_RS12970 2725345 .. 2725367 + -14.1  -4.41348   GCCTGAGCGTAACCT           CGGGGCGCC CTTGC GGCGCCCTG           TTTATTTGAGAGAAC 100 35
        hslJ 2726066 .. 2726078 +  -4.8  -4.37502   AAAGCAGCACGGCGC                TGGC AAGCA GCCA                TTTTGATGTCGTCAT  68 277
        nifJ 2730683 .. 2730707 + -17.9  -4.17048   CTGAGTAACCTCCCT          CAGGGCGCGAG CGA TTCGCGCCCTG          TTCTTTTACCGCCGA 100 33
        ttcA 2731850 .. 2731877 + -14.9   -2.5893   ATCAAATAAGCCCCC        TCGCCGCTTGC CATCCT GCGAGCGGCGA         CATTTTCCTTTCCCG  83 32
HAP49_RS13000 2732414 .. 2732433 +  -9.3  -3.31263   AATCGAATAAAAAAA            TGCCGGT GATTAA ACCGGCA             TTGTACGAATCAAAT  67 51
HAP49_RS13010 NONE
HAP49_RS13015 2735666 .. 2735679 +  -2.4  -3.65812   CATATACTTTTCTCA               CTAC GAGGAG GTAG                TTATGTTACGCGACC  50 204
HAP49_RS13020 2735977 .. 2735998 +  -9.5  -3.89346   ATGTGATGATGGCAA           CCCTGTTTA TTAT TAAACGGGG            TTTATCGCGTGGGAA  78 72
        mpaA 2739629 .. 2739656 +    -4  -2.67694   GTCGCCTGCGGCACC        GCGGCGCGGATCG CCA CCAGCCGC-TCGC        TGATATAGTGATCGT  41 504
         tpx 2740895 .. 2740910 + -11.8  -4.57882   TGGAAACACGCTAAA              GGCGCC GCAA GGCGCC               TTTCTTATTCTTCGC 100 63
        pspF 2748187 .. 2748203 +  -4.3  -3.06796   TGCCTTCCACATCAG              AGCCGCA AAC TGTGGCC              TTCCGTGAACTGCCA  48 106
        sapA NONE
        sapB NONE
        sapC NONE
        sapD NONE
        sapF 2756493 .. 2756506 +  -9.5  -5.27923   ACCTTCACCTACAAA               CCCGC TGCG GCGGG                TTTTTTATCGCCTTG 100 46
HAP49_RS13130 2758425 .. 2758436 +  -7.2  -2.64218   CGTTTCTATGATTAA                GCCG ATAG CGGC                 GTTGTGATGCCCCCT  55 372
HAP49_RS13135 2759582 .. 2759601 +  -3.4  -3.51329   TGAAATACCAGCTCT            ACGCCGGT TTCC ACCAGCGG             TTGTGATTGAAAATG  49 519
HAP49_RS13150 2763908 .. 2763937 + -12.7  -2.61144   GCGCATCGCCTGAAA       ACGCGCGCCCGGT TCAC GCCGGGCGCGCCA        ATATTTCCAGGATAG  76 28
        gloA 2765418 .. 2765437 + -12.1  -4.84527   TTGCCCCCTTCTTCA            CCCCGGC CCTCGC GCCGGGG             TTTTTCATCTATCGC 100 41
HAP49_RS13165 2767552 .. 2767577 + -16.1  -5.40072   CGGTCGTAACGCAAA         ACGCCGGCGGT GAGA ACCGCCGGCGC          TTTTTTTGCCCCGCG 100 55
HAP49_RS13180 NONE
HAP49_RS13185 2772574 .. 2772589 + -11.8  -4.78764   CCGAGCATCAAGCAA              GGGCGC CGCG GCGCCC               TTTTTACTGGCTTTA 100 46
HAP49_RS13195 NONE
HAP49_RS13200 NONE
HAP49_RS13205 2777556 .. 2777578 +  -8.4  -3.75153   CAACGAATAACGCGC          CGCGCGGGC CACGCC GCCCGC-CG           TTTCCCTTGCGCAGC  70 31
        osmB 2778318 .. 2778331 +  -3.7  -3.51349   CCCGTCTTTCACCGA               GCCGC CGCA GCCGC                ATTTCTTTTTCAGCT  51 316
HAP49_RS13225 2779882 .. 2779907 + -14.7  -2.54504   AATAATGTTTCCGGT         ACAGGGCCCGA ACGT TCGGGCCCTGC          CTCTGTTTGCCGCCT  83 36
HAP49_RS13230 2780362 .. 2780380 +   -16  -6.07627   ATGAACATAAAAAAA             CGGGGCGA TTT TCGCCCCG             TTTTTTTTTGCCGCT 100 44
        ribA 2783846 .. 2783863 + -14.1  -5.20534   CCGCGGAAACAATCA             GGGCGCC TTAC GGCGCCC              TTTTTATTGATTAAT 100 50
HAP49_RS13270 2791671 .. 2791689 + -13.1  -3.35371   ATTAAGACAAGAAAA             CGGGGGC GCCTG GCCCCCG             TTGATTCCCGCTCTC  82 36
HAP49_RS13280 NONE
        cobO 2794731 .. 2794753 + -10.4  -3.54543   GGCAGATCCAGTTCG           GCCCAGCCGC CGC GCGGCAGGCC           TTTCGGCAGATCGAT  70 273
HAP49_RS13315 NONE
HAP49_RS13320 NONE
        trpD NONE
       trpCF NONE
        trpB NONE
        trpA 2805491 .. 2805513 + -16.3  -3.59649   GCGTGATCCTCTCCA           GCGAGCGCC CCGCC GGCGCTCGC           TTTAACAGCTTGTTT 100 35
HAP49_RS13345 2806021 .. 2806043 + -19.2  -3.93236   TAAATAATACCGACA           CAGGGAGGCG CAA CGCCTCCCTG           TTTGTGGCCTTCATC 100 34
HAP49_RS13355 NONE
HAP49_RS13360 2808226 .. 2808247 + -18.7  -5.63517   GTAAGCAAAAACCAA           GGGGCGCGC TTCG GCGCGCCCC            TTTTTTGTTTACCCC 100 48
HAP49_RS13370 2810733 .. 2810762 + -14.3  -2.86259   TAGTTACAAAATTGT       TAATGCCTGCGGC GCTT GCCGCGGGCAGTA        TGATGTTATTCCCTC  82 38
        yciA 2811253 .. 2811270 + -12.7  -4.94262   CTGCAAATGCAAAAA             GGGTCGC CGAG GCGACCC              TTTATTTTTGGTATG 100 53
HAP49_RS13390 2813864 .. 2813897 +  -9.6  -3.53761   GGCCTCCGGCCCACA    CCG-GCGCAGTCACCG CGAG CGGTGTCTG-GCACGG     TTTCCCCGCGGGTTG  65 485
HAP49_RS13400 2815601 .. 2815635 +  -4.3  -3.78775   CTGAACAGCGACACC    TCCTGCATC-AACGGC AGCC GGTGTTCGATGCAGGC     TTTGATAATGCCCAG  56 231
HAP49_RS13415 NONE
        xylB NONE
HAP49_RS13425 NONE
HAP49_RS13430 2822366 .. 2822385 +  -2.8  -3.16564   GTCTTGCTCGACCCA            TCGCGT AAGCAACA GCGCGA             TTAATAACATCAGAC  44 2
HAP49_RS13435 2823455 .. 2823471 +  -9.3  -3.05384   CCCCCTGCCTTCAGG              GGGCCCC GCT GGGGCGC              TTGCCTGCAAACAAA  65 50
        smfY 2825827 .. 2825838 +  -5.8  -3.35535   ATCGGTTTGAGCGAT                GGCA ATAA TGCC                 TGTTATCGTATTTAA  57 116
HAP49_RS13450 2826448 .. 2826465 + -11.3  -4.67038   GACGCCATAACAAAA             CAGTCCC TTAC GGGACTG              TTTTCGTTTTACCAC 100 45
         cls 2828340 .. 2828371 +  -4.4  -3.72576   TGTTCTACTTTTTCA      GCCCGCT-GCTGT AAAAGCC GCAGCGAGCGTGC      TTTAATAACGCCAAA  56 12
HAP49_RS13465 2828762 .. 2828782 + -18.3  -5.06816   TTTCGGATAAAAAAA            GCCCCGCTG ACT CAGCGGGGC            TTTTTGTTGCCGGCT 100 54
        adhE 2840751 .. 2840766 + -11.8   -5.4505   GAACCGATAAAAAAA              CCCGCC AAAC GGCGGG               TTTTTTATTGCGCCG 100 50
         hns 2842562 .. 2842579 + -10.5  -4.67038   GGCCCGTATCTGAAA             GGCTCCC TGCG GGGGGCC              TTTTCATTTTAAAGC 100 50
HAP49_RS13545 2848883 .. 2848901 +  -2.4  -3.12351   AGCGCTTCACGTTTA            CG-CCTG CGCAGA CAGGCCG             TTCAGTATCAGACAG  42 47
        purU NONE
HAP49_RS13555 NONE
HAP49_RS13560 NONE
HAP49_RS13565 NONE
HAP49_RS13570 2850607 .. 2850620 +  -3.1  -3.47573   ACCCTACTTAAAACA               CGTTG CATC CAATG                TTCTCGTATCAATAA  47 61
HAP49_RS13575 2851345 .. 2851373 + -16.7  -3.27525   GAAATAAACCCGCGG        CGCAGTCAGCGGT CCT GCCGCTGTCTGCG        TTACATTTCCCGCCA 100 34
        xthA 2852252 .. 2852269 + -14.1  -4.84311   CGCTGTAACCCCATC             CCCCGGC GCTC GCCGGGG              TTTTATTCTGTGAAG 100 33
HAP49_RS13585 2853021 .. 2853035 +  -8.5  -4.35675   ATTCACTCTTCTCCT               GCGCC TTGCC GGCGC               TTTTCCTGCGTTTTT  79 357
        sppA 2859831 .. 2859848 + -14.1  -5.60993   ACAAATAATTCTGCA             GCCCGGC CACC GCCGGGC              TTTTTTTCTGCCGCC 100 40
        ansA NONE
        pncA 2861590 .. 2861606 + -15.1  -2.87132   CAACTAAATCCTCTC              GGGCGCC ACC GGCGCCC              TCTCTACGCAGCGGC  86 34
HAP49_RS13630 2863099 .. 2863123 + -12.2  -3.53761   AAACGGTAAATCGAC         G-GGGGCGATG GCGA CATCGCCCCGC          TTTAGGGACAGCTTA  82 32
        gapA 2865255 .. 2865274 + -13.6  -5.76237   TTAAGCTGATAATGA            GGGCGACA TTTT TGTCGCCC             TTTTTTATTTGTATC 100 51
HAP49_RS13650 2866226 .. 2866241 + -11.8  -4.72272   TACAGATGTGCAAAA              GGGGCG CCGG CGCCCC               TTTTTGATGCACGAC 100 63
        yeaG NONE
HAP49_RS13665 2870833 .. 2870859 + -17.4  -4.88293   GCGTGAATGTCACCA         CAGCCGGAAAGC ACC GTTTTCCGGCTG         TTTCTTTTTCGCATT 100 49
HAP49_RS13670 2871609 .. 2871625 +  -9.3  -2.82742   TCTTGGCCTGCAGCC              GCTGCGC CAT GCGCCGC              TGATTCTCCGGCGCT  58 257
HAP49_RS13680 2873204 .. 2873216 +  -2.6  -4.10161   TTCTAACGCCCCAAT                GCCG CGCGC TGGC                TTTTAAACAGTCATA  55 35
HAP49_RS13690 2874766 .. 2874776 +  -5.4  -2.74999   ACCACCGGAAACGCC                 GATG CAC CATC                 TGATGTTAGACATTG  48 331
HAP49_RS13700 2875313 .. 2875340 + -10.5  -4.54727   CTCTATTATCGTCAG        GGGGCGCAGCG CTGACC CGCTTTGCCCC         TTTTCATTTGCCGCC  91 11
HAP49_RS13705 2876593 .. 2876612 + -13.6  -3.05384   CAGATCAGAAAAGTC            GCCTGAGC CCCG GCTCAGGC             TTCGATGGCGACCGG  81 20
HAP49_RS13720 2879921 .. 2879942 + -10.1  -2.70932   CCGTTTGACTGAGCA           CAAGCCCAC ACAG GCGGGCTTG            TGGTTGCGGGAACGA  65 29
HAP49_RS13730 2882465 .. 2882482 + -14.1  -4.62669   CGCCACAACGACAAA             GGGCGCC GCAT GGCGCCC              TTTCTTATTTCATTG 100 42
        nhaB NONE
        dsbB 2885705 .. 2885722 + -14.1  -5.52909   CAGACAAACAAAAAA             CGGCGCC GGAA GGCGCCG              TTTTTTTAGGTATTG 100 45
HAP49_RS13750 2887230 .. 2887244 +  -8.6  -2.89191   TGGCATTAAAACTCG               TGTTGC CTA GCAACA               TCTGTCAAGGTATCC  60 106
        minC NONE
        minD NONE
        minE 2891827 .. 2891859 + -14.3   -3.0094   GATTGCGACGCATTA      ATTACCCCCTGTATA TTT TATGCAGGGGGTAAC      TGTATGTGCATCCAG  83 39
HAP49_RS13815 2899043 .. 2899064 + -11.5   -5.4505   GCAGACGAAAAAAAA           CCGCAGACG GCAA CGCCTGCGG            TTTTTTATTGCCCGC 100 49
HAP49_RS13840 2904016 .. 2904027 +    -3  -3.56836   GTGAAATATCAGTGT                TGTA AAAT TACA                 TTTCACGCCTGGTTT  49 131
         pyk 2905561 .. 2905586 + -14.7  -5.78622   ACGCCGCAGACGACA         TGCCGGCCGGC TCAC GTTGGCCGGCA          TTTTTTTTGCCCTGA 100 44
HAP49_RS13850 2906750 .. 2906761 +  -5.8  -4.15565   CGCGAATATAGATAT                CCAG CATG CTGG                 TTTTGCCGTCGTACA  67 266
        znuC NONE
        znuB 2911605 .. 2911622 + -14.1  -4.44667   GCCGGGATATGACAA             GGGCCGC ATCT GCGGCCC              TTTCTTATTGGCGGA 100 46
HAP49_RS13915 NONE
HAP49_RS13920 2919004 .. 2919014 +  -6.8   -4.4078   ATGACGGCTATGATG                 CTGG CTG CCAG                 TTTTGGTTAGGGAAC  74 92
HAP49_RS13925 2919452 .. 2919466 + -12.8  -2.73483   CCCGTTTTATCATCA               GGCGGC CGC GCCGCC               TGCTTCCGCTCCGCT  77 42
        cmoA NONE
        cmoB 2921340 .. 2921362 +  -7.6  -3.57144   CATCGTCGCGTTCGG           CGGGATCTGC GGC GCATAGCCCG           TTTCACCGTACGCCA  62 116
HAP49_RS13950 2926017 .. 2926027 +  -8.2  -3.28791   AAGGGGTCTTACGGC                 CCGG AAA CCGG                 TTGTCAAACGCGGCT  64 122
HAP49_RS13960 2928162 .. 2928179 +  -6.9  -3.93369   TCGGTAGCCGCTCGC             CCTCGCC TTTT GGCGAGC              TTTGCTTCAGCTTGA  65 126
        argS 2931210 .. 2931225 + -10.4  -5.95946   CGCGGAAAGTAAAAA              GGTCGC CAAG GCGACC               TTTTTTTGTTCTTGC 100 50
        mdtH NONE
HAP49_RS14000 NONE
        grxB NONE
HAP49_RS14010 2939425 .. 2939457 +  -7.1  -4.02424   CTATCCTCTGCACAT    CG--CCGCCTGC-CGT TTTC ACGCGCAGGCGGAACG     TTTATAATGATTAAT  69 85
HAP49_RS14015 2940101 .. 2940118 + -14.1  -5.06414   GTCTGGGGACATCAA             GCCCGCC GCCA GGCGGGC              TTTTTATTGCCAAAA 100 45
        purT 2944845 .. 2944860 +  -6.8  -3.50853   TCTGGTGCGTCAGGC              CGGTTG CGAA CAGCCG               TTATCGTTGCGCCAC  62 376
        pabB 2947716 .. 2947728 +  -3.3  -2.82834   ATTTTGCCGCAGCTA                GGGGA GTA TGCCC                TGTCGTGATCCCATC  41 5
HAP49_RS14065 2948410 .. 2948426 +  -4.4  -4.08394   TCGCTTTTTCAACTA              CCGTTC CGTTT GAATGG              TTTTAAAAAAACTGT  61 124
        sdaA 2950130 .. 2950147 + -14.1  -5.28778   GCGACTGACAGACAA             CCCCGCC ACCC GGCGGGG              TTTTTTATGGGTAAT 100 33
HAP49_RS14075 2951962 .. 2951989 + -14.8  -2.53263   GAAAACAGAAGAGAA        TACGCCGGAGGC CTGA GCCTCCGGCGGG         TGGGTTACGAATGCG  83 10
        manX 2955057 .. 2955076 +  -6.4  -4.25256   GATTAACAAACTCAA            TTAGTGGC GCCT GCCGCTGA             TTATTTTACTCAGAG  68 22
HAP49_RS14090 NONE
HAP49_RS14095 2956788 .. 2956807 + -16.4   -5.4492   TAATCGTTCGAAACG            GCCGGGGG GCAA CCCCCGGC             TTTTTTATGTGTGTG 100 38
HAP49_RS14100 2957349 .. 2957359 +  -2.4  -4.15066   CTGTGGATAATTAAT                 CGGC AGC GCCA                 TTTCATTTCTGACTA  57 84
        mntP 2958296 .. 2958309 +  -8.1  -6.02919   GAACTGCAAAAAAAA               CCTGC CGCG GCAGG                TTTTTTTGTTTCTGA 100 48
        pgeF 2960047 .. 2960064 +  -9.8  -4.84359   GACGGAAACGAAAAA             GCCCGC GCGAAG GCGGGC              TTTTTGTACAGCTGA 100 39
HAP49_RS14130 2961143 .. 2961159 +  -5.7  -2.75064   ATTGACTTTATTCAT              CCCGCTG CGC CGCCGGG              TGATTAGGTAACGCA  51 118
HAP49_RS14140 2963158 .. 2963180 +  -5.6  -3.21276   CAGCCCGAACAGCAT          GCGGCTGTT GGCATA AAC-GCCGC           TGTTGTAAACCGACA  51 504
         fos 2965593 .. 2965607 +  -4.9  -3.72027   CATACGCTTCAACAG               CGCCG TTTGC TGGCG               TTGTTGCTCGGCAAT  58 170
HAP49_RS14175 2966408 .. 2966438 +    -8  -2.53263   GATTAACCGCCACCG       CCCGACGCCGCCGC TTT GCGGCGGCCCCGCC       TCAGTTGCGGGTAAA  58 35
HAP49_RS14185 2967437 .. 2967457 +  -6.7  -4.82901   GTTTTTCCGAATAAT            TGCCCCCCG TCA CCGGCGGCA            TTTTTGTCGACGGCG  82 387
HAP49_RS14190 2968363 .. 2968376 +  -9.5  -3.86346   GCGGAGATAAAAAAA               CCCGC CGAA GCGGG                TTTATGCAGGAGTCA  78 480
HAP49_RS14220 2971261 .. 2971279 +  -6.8  -2.64062   CGCAATGCTGAGGAA             TTTCTGAT TTC ATCGGAAA             CTTCGTCTTCCTCTG  52 52
HAP49_RS14225 2971600 .. 2971619 +   -15  -2.72344   TCCCGATAAAACAAA            GGCAGGGC TTGC GCCCTGCC             TGATTACCAATCCCG  84 43
HAP49_RS14260 2981153 .. 2981179 +  -6.5  -3.03159   GCCACCTGATGGCCG        GGCGCCACG-CT GCGC AGATGCGGCGCC         TGTTCACGGCATTGC  51 62
HAP49_RS14295 NONE
        cydB NONE
HAP49_RS14305 2991102 .. 2991112 +  -3.2  -4.84761   GCTCGAACACTTGAC                 CGAG CGC TTCG                 TTTTTGTCCCAATAT  75 124
        narX NONE
        narL 3026619 .. 3026644 +  -8.9  -3.65425   CCCGCGTCATCACCG         GCGGTCGCCGTC AGC GGCGGCG-CCAC         TTTCAGCTCTATCCA  65 110
HAP49_RS14460 3029175 .. 3029198 +  -4.4  -3.36492   GCCGATTGAGCAATC          CGGCCACTTC CGCA GTGCTGGCCG           TTGTCGGATTGGCCA  48 60
HAP49_RS14515 3041325 .. 3041339 + -11.4  -5.85737   AGTAAGTAAATAAAA               CCGCAC CCC GTGCGG               TTTTTTTGTTACTCT 100 131
        chaA 3042620 .. 3042648 +  -8.7  -2.59431   ATCTTCGCCTGATCA        AAAAGGGGCGCAC TCT GTGCGCCCCTGCC        TGCGTTATACCGAGA  61 29
        putA 3054936 .. 3054953 + -11.3  -5.55769   TAACCGCTACGCAAA             CCCTGCA CTTG TGCAGGG              TTTTTTATTGTCCGC 100 80
HAP49_RS14560 NONE
HAP49_RS14565 3055676 .. 3055702 +  -3.5  -3.81146   GAAAGCAGAGTGAAT         TCAGTCGGGGG AAACA CCCCCGACGCC         TTATTGATTCCGGAA  57 28
        fliD NONE
        fliS NONE
        fliT 3064331 .. 3064341 +  -2.4  -4.66537   GGATAAACATCATCC                 CGAC ACG GACG                 TTTTCTGTTCAGCAG  65 188
HAP49_RS14620 3065494 .. 3065504 +  -6.8  -3.18264   TTTTGTTGGGGTTGT                 GGCT GTT AGCC                 TTACTGAATGAAGAA  56 182
HAP49_RS14630 3067580 .. 3067599 + -10.8  -6.15828   TTATCGCACCTTCAA            CCAGCTAT TTCG ATAGCTGG             TTTTTTTTTCCTCGG 100 144
        fliF NONE
        fliG NONE
        fliH NONE
        fliI NONE
        fliJ NONE
HAP49_RS14665 3074783 .. 3074808 +  -4.7  -3.08639   CTGAGCCGCCGCAAA         CGCCCAAGCTGG CAC CCA-TTTGCGCG         TCTATTCAGGCTATT  48 37
        fliL NONE
        fliM NONE
        fliN NONE
        fliO NONE
        fliP NONE
        fliQ NONE
        fliR 3079466 .. 3079477 +  -3.6  -3.54424   CAACCGCAAAGCACG                CCGG TTAT TCGG                 TTTGACCCACTGGAA  52 412
HAP49_RS14705 3080393 .. 3080418 +  -9.7  -4.37092   CGGTTTCAAGAAGCC         T-CCCTCCCCGC GGG GCGGAGAGGGCA         TTTTCTAAGCGCACT  87 244
        flgA 3091343 .. 3091353 +  -2.4  -3.23274   GGTCGGGGACGACGG                 CGCG ATC CGCA                 TTACGTTATAAAAAA  44 4
        flgM NONE
HAP49_RS14775 3092291 .. 3092315 + -15.8  -2.52795   TTGACCTGACTCATT          TGCCCGGTGA GCCTA TCACCGGGCA          TGCGTTCACCGGCTT  86 37
HAP49_RS14785 3093311 .. 3093340 +  -9.9  -3.59979   AGACCGATGCTGCTG       CCGCTGC-CGCCGC CGA GCGGAATGCAGCGG       TTTACCGTGCAAAGC  70 158
        ydgT NONE
        uspC 3111443 .. 3111457 +  -2.7  -3.71645   CGGACCTTGTTTGCC               GCACC ACAAA GGAGC               TTTCGATGTCCCCTT  52 90
HAP49_RS14875 3112501 .. 3112526 + -16.9  -4.34402   GACGAATAACCCGTA         GCAGGGCGTGG TACG CCACGCTCTGC          TTTTAATGTACGGCG 100 32
HAP49_RS14885 3114253 .. 3114267 + -12.8  -4.07568   GACTCACCGTCGGAG               GCCCGC ACC GCGGGC               TTTTCACGCCGGCCA  91 72
        tssI NONE
HAP49_RS14895 3117505 .. 3117522 +  -4.1  -2.52676   GATTTCAACGTTCCG             TAAACGG CTTA CCGTTCA              TCAGTTCGCGAAATC  42 71
HAP49_RS14900 3118097 .. 3118120 +  -4.6  -4.77983   CGCTCCCCGCATTGG          CGAT-CGGC TCTGAAC GCCGCATCG          TTTTCTTCATCTGTT  74 61
HAP49_RS14905 NONE
HAP49_RS14910 NONE
HAP49_RS14915 NONE
HAP49_RS14920 3122915 .. 3122932 +  -6.9  -2.76696   AAAGTGTTGCTGCTT             GCGCCCT GATG ACGGCGC              CTTATTACACAGCCA  53 17
HAP49_RS14925 NONE
        tssJ NONE
        tssK NONE
HAP49_RS14940 NONE
        tssM NONE
        tagF NONE
        tssA NONE
        tssB NONE
        tssC 3134249 .. 3134274 + -18.3  -2.69468   TCCTGATGGACTGAA         GTCAGGCCGCG ATCG CGCGGCCTGGC          TGATGTATCAACCTC 100 35
HAP49_RS14970 3135035 .. 3135054 + -16.4  -3.16881   AGCTTAATTTGTCTG            CCCCCGGC TACG GCCGGGGG             TTCATAACATGGATA 100 34
HAP49_RS14975 NONE
HAP49_RS14980 3135936 .. 3135948 +  -2.7   -4.3739   AATTAATAATTAATA                TTGTA AGT TGCAA                TTTTATAAAACCATC  61 35
HAP49_RS14985 NONE
HAP49_RS14990 3137382 .. 3137408 +  -4.4  -3.54543   GGGGCGTTGGCGTAC         CGTTAATGGCTC AAG GAGCAAATAATG         TTTACGAAAGTGGCT  54 497
        tagH NONE
HAP49_RS15005 NONE
HAP49_RS15010 NONE
HAP49_RS15015 NONE
HAP49_RS15020 NONE
        tssF NONE
        tssG NONE
        tssH 3148642 .. 3148660 + -17.4  -2.71712   CAGGCATAACGCCGC             GGCCGCCG AGA CGGCGGCC             CTTTGAACACAGAGA  95 32
HAP49_RS15040 3150144 .. 3150159 +  -8.2  -4.32903   AATCCCGTTCTGAAA              CTCCGC CACG GCGGGG               TTTTCCCTATTTCAT  79 39
        tssI 3152340 .. 3152370 +  -6.2   -4.1851   TAAGCCAACACAACG       GGCTGAATCTGT ACCGCCC ATCGATTCAGCC       TTCTTTATCATTTCC  68 165
HAP49_RS15060 3155208 .. 3155219 +  -2.2  -3.42069   TCCGCTCATTGCTTT                G-GGC CGG GCCGC                TATTATTCCGATTAA  46 178
HAP49_RS15065 NONE
HAP49_RS15070 NONE
HAP49_RS15075 3158279 .. 3158304 +  -3.2  -3.87807   ATTGCTCGTAGGTTT         TCTCCGCATC TTGCAC GTTGCGGATA          TATTTTCCTTGTATT  56 491
HAP49_RS15085 3160881 .. 3160892 +  -7.2  -4.12942   GCCAGCTCATGCATG                CGGC GTGT GCCG                 TTTTCCCCGCTTTCC  72 306
        aceE 3163884 .. 3163907 + -10.9  -4.81083   CGCATAGCCTACCCA          CGCCGCCGG CTGTCA CCCGCGGCG           TTTTTCCTCCTTCGG 100 41
        fdhD NONE
HAP49_RS15125 NONE
HAP49_RS15130 3171215 .. 3171236 +  -2.3  -4.08692   GGATTCATTAAGCAA           TTTGCTGAGA TAG TC-CAGCGAG           TTTTGCGCCGCCTTC  57 504
HAP49_RS15140 NONE
HAP49_RS15145 NONE
        pcaF NONE
        pcaD NONE
HAP49_RS15160 NONE
        catC NONE
        catA NONE
HAP49_RS15175 NONE
        benB NONE
HAP49_RS15185 NONE
HAP49_RS15190 3181361 .. 3181373 +  -9.1  -3.59979   GAACGGTGCTGCCGG                TCGCC GGC GGCGA                TTTGGGATAAAACAG  70 3
HAP49_RS15210 3184781 .. 3184795 +  -2.8  -3.28765   CCTGTGCGATGAGCT               GTTGCA GCC TGCAAG               TTAAGTTTCGGCTAT  46 7
HAP49_RS15215 3185204 .. 3185250 + -11.1  -3.87994   CGAAAACCCCACAGA TTCGCACCTAGAGGCGAATTAT TGAC AT-ATTCGTATCCAGGTGCGAA TTTATAGCCATCCCT  84 155
HAP49_RS15220 NONE
HAP49_RS15225 3187014 .. 3187024 +  -3.2  -3.01712   CTGGAACAGCGCCTG                 GTGT TCT ACGC                 TGTTGGCGGCGAACA  43 380
HAP49_RS15240 NONE
HAP49_RS15245 3192542 .. 3192555 +  -2.3  -4.56597   CGGCGTCGAGGGCAT               CCTGC ACCA GCAGC                TTTTTCACCAGCGCG  68 174
HAP49_RS15255 3195107 .. 3195117 +  -8.2  -3.14132   TCGCCTCGCTGCCCA                 GCGC GCT GCGC                 TTCATCAGCGGCGAC  58 350
        rcsA 3196955 .. 3196990 + -13.4  -5.44119   GGAACCACAAAAAAA    TACCTGTTGCGTTATC CCCC GCTAGCGCAACGGGTA     TTTTTTTGCCGTCGA 100 117
HAP49_RS15280 3198683 .. 3198700 +  -8.4     -6.13   GTTGCAAATCTTTAT             GCGCCT CCCTAT AGGCGC              TTTTTTTTTGCCTAT 100 139
HAP49_RS15285 3199308 .. 3199319 +  -7.2  -3.13403   CCTGCCGCCCATCGC                GGCG GCTT CGCC                 TCTTCCTCGCAAAAC  59 44
HAP49_RS15290 3200684 .. 3200716 +  -5.3  -3.93963   CGGTTCAGCCAATTG      GTGCCGCTGCGCCAG CTC CCGCCACAGCGACGC      TTTGTCCGTCATCAT  60 259
HAP49_RS15300 3203076 .. 3203087 +  -5.8  -3.96093   ACCCTGTTGAGCAAC                GGCT GCTT AGCC                 TTTGATCTTCCTGTA  64 511
HAP49_RS15320 3205219 .. 3205235 +  -7.9  -3.12351   AGCAATCATTTCGTC              CGCCCGA GAG TCGGTCG              TTGCCTGTCGGGCCA  59 153
        yjdN 3205941 .. 3205992 +  -3.6  -3.92373   GCCGCTGATGCGGGC AGCGATCGACCTTTCGCCTT-ATCG CCT CGTTAAAGGCTAGAGGTCTGGCGCA TTTATGCATAAAATA  57 279
HAP49_RS15335 3207619 .. 3207645 + -16.6  -4.15044   GCGCTTAATCATCAA         TCGGGCCACCAA ATT TTGGCGGCCCGA         TTTATTACCAACCAA 100 33
HAP49_RS15340 3208981 .. 3209026 + -16.7  -3.35996   GGGCAGCCGCTGATC TGAATGGCTCGCCGCCGCCGG GATG CCGGCGGCGGCGAAACGCGCA TTATGCCTCGAAGTC 100 23
        paaA NONE
        paaB NONE
        paaC 3213433 .. 3213448 +  -2.6  -3.53444   AATGGTAGGAGGCCG              CGA-TGA ACG TCACTCG              TTTGCAACCCGCTGA  47 33
        paaJ NONE
        paaK NONE
HAP49_RS15375 3215774 .. 3215786 +  -3.4  -3.91897   ACGTACGCCAAACTA                TCAG GGGCG CTGA                TTTATGGATAACGCA  54 13
        paaB NONE
HAP49_RS15385 NONE
        paaI 3218548 .. 3218560 +  -3.3  -3.01726   ATTTTAGGAGATCAG                GCATG AAT CAGGC                ATTTATCTGCGACGG  42 20
        pcaF NONE
        paaF NONE
        paaX 3222102 .. 3222114 +  -3.3  -2.91681   ACATATTAAGGAACT                CACGC TAT GCCTG                TGTATCAGATTGACG  42 32
        paaY NONE
HAP49_RS15440 NONE
HAP49_RS15445 3229477 .. 3229503 +   -13  -2.90956   CGACGCCAAAAAATC         CATTTCGCTGCC GTA GGCCGCGAGATG         TCTGTCCACTGATTT  70 231
        gabD 3231221 .. 3231238 + -14.1  -3.60814   GCCTGATGCGTTCGG             CCCCCGC ACCT GCGGGGG              TTCTGTCTGGCGTTT  89 35
HAP49_RS15460 NONE
HAP49_RS15465 3232217 .. 3232229 +  -3.3  -3.53012   CGGAGTCCGGCGTCG                CACCG TGC CAGTG                TTTGACGCCAGCCGG  49 136
HAP49_RS15475 3233564 .. 3233584 +  -3.8  -4.84359   ATTGAGGCGTTGCGG            CGCGGGGC TTAAC GCCCGACG            TTTTTCTGCAGATGC  72 14
HAP49_RS15485 3237052 .. 3237091 +  -2.7  -5.12707   GGGTTTTACGTCACC  CTAGCGGCTTCTCGCTG AAATAA TAGGGAGAAACCGCGTG   TTTTTTCCGATTTGG  76 72
HAP49_RS15490 3239550 .. 3239567 + -12.7  -5.45802   TTAGTACCCCGCAAA             GCACGCC GCAA GGCGTGC              TTTTTCTTTTCCCGC 100 50
HAP49_RS15495 NONE
HAP49_RS15500 3240354 .. 3240370 +  -9.3  -2.71712   CACCCACATGGCGAA              GCGGGCG TCG CGCGCGC              CTTTCAGCCCGGCGG  57 266
HAP49_RS15595 3264155 .. 3264170 +  -6.8  -5.81412   TTCGTTTCATTTTAA              GCACCT TCGC GGGTGC               TTTTTTTTACATCAA 100 76
HAP49_RS15690 3290227 .. 3290249 +  -9.2  -4.77157   CCGTGCAATCCATAA           GGAGGTTC CTGATGT GAACCTCC           TTTTTGCTCGCTTAA  91 42
        mtfA 3295644 .. 3295654 +  -2.4  -2.70932   CAGGCGGAAAACAAC                 GCGC AAT GGGC                 TGATTGACGGGCGCA  39 8
HAP49_RS15725 3295848 .. 3295873 + -17.7  -4.87626   GCCATATTTAGAGAA         GCCCGCTTAAG GAAA CTTAAGCGGGC          TTTTTGCTGTTGGGC 100 37
        tenA NONE
HAP49_RS15755 NONE
HAP49_RS15760 NONE
HAP49_RS15765 3303428 .. 3303449 +    -8  -4.07568   TTCGATAAACGCGTT           CACGTAGG CGGCGC CCTGCGTG            TTTTGCCGCGGCACC  70 131
        opgB 3306664 .. 3306698 + -13.6   -3.5394   CCTGATCCCCCGCCT     TCACGGGCGCGGTA TTTTCTT TGCCGCGCCCGTCA     TTTCGACCAAGCTTT  86 36
HAP49_RS15780 3308263 .. 3308282 + -10.6  -5.14563   CCGCTAACGGTGCTC            AGGCCCGC TGCG GCGGGCCG             TTTTTTCCTCAACGC 100 34
HAP49_RS15795 3309640 .. 3309665 + -16.9  -4.81249   GCCAAATTTAGAGAA         GCCCGCTCAGGG AAA CCC-GAGCGGGC         TTTTTGCCTTTCAGC 100 37
HAP49_RS15810 3311759 .. 3311770 +  -2.2  -4.11183   GCCGAGCGGCAGACG                GC-CC GAC GGCGC                TTCTTTCTCCTGCAG  59 514
HAP49_RS15830 3314329 .. 3314341 +  -4.8  -4.08767   CATAAGCCTGCTGCA                GCGA GGAAG TCGC                TTTTAGCACCGTCGC  63 345
HAP49_RS15875 3325689 .. 3325699 +  -4.6  -3.41602   TCGCCGTGCGCGAGG                 CGGT CTG GCCG                 TTGTGATCCCCTGCC  52 9
HAP49_RS15910 3333846 .. 3333863 +  -9.1  -3.25356   GGAGTGCCAGCGGGC             GTGCAGC CGAC GCTGCGC              TTCATCGATTTGCAT  63 393
HAP49_RS15920 3335345 .. 3335359 +  -3.4  -3.51406   CACCGAGACGATCGG               CGCGCC GAA GTCGTG               TTCGTCTTTATCCTG  49 227
        rarD 3336890 .. 3336905 +  -6.8  -4.07568   ACCGCGTTGGCGATC              TCGTCC GGGC GGGCGA               TTTTACCCAGCGGGA  67 124
        dpiA 3348948 .. 3348959 +  -7.2   -4.0031   TACCGCGCTGGCGAG                CCGC ATTA GCGG                 TTATTTGATCGCCCT  71 17
HAP49_RS15995 3352168 .. 3352211 +  -7.6  -2.92613   GCCAAAAAACTCAAC GGGTTGCGCATTCTGTAA GCAAACAG TCACAGAATGTGTAATCC TCCTTTGACATGCCG  57 45
HAP49_RS16000 3352350 .. 3352375 + -20.5  -4.87626   GCCATATTTAGAGAA         GCCCGCTCAGG GAAA CCTGAGCGGGC          TTTTTGCTGTTGGGC 100 37
HAP49_RS16010 3354447 .. 3354468 +  -4.3  -3.61715   ACTGAAATAACGTAC           TTACCGACC CGAA GGCCGGTCA            TTGTTAACACGGATA  54 180
HAP49_RS16040 3359561 .. 3359576 + -10.4  -2.57132   CCAATATTTCAAGAA              CGGACG TGAA CGTCCG               CTTCTGGCACGCAAC  68 56
HAP49_RS16065 3367927 .. 3367946 +  -3.6  -4.82667   GTATTTCAATCAATA            CCTACA AATTCCAG TGTAGG             TTTTTGGTATAGTGG  72 274
HAP49_RS16070 3368893 .. 3368904 +    -3  -3.39895   AAACTGAAAATAGCC                TCAT TTCA ATGA                 TTGATTGGTAGCAGG  47 34
HAP49_RS16075 3371389 .. 3371411 + -17.7  -3.40597   GGCCGCCTAAGCGAA           GCCCGCCGG GTTTA CCGGCGGGC           TGTTTACCTGCGGCG 100 31
HAP49_RS16085 3373401 .. 3373454 + -14.5  -4.72272   TGCACGCCGTGCAGA CC-GGCGCCGCGCGGCGTGCGC-AC AATCCG GTAGCGCTCGCCCTGCTGCGCCCGG TTTTTGGTCCAGAAG 100 404
HAP49_RS16105 3377406 .. 3377428 +  -9.9  -2.60496   CATGCCTTGTTAACC          GCTCCACGCC CGGC GGC-TGGAGC           ATCTTTACGGAAGCA  65 236
        katG 3379662 .. 3379681 + -11.4  -4.72272   GTAAACTCCCCGCAA            CGGTCTGC TTCG GCAGGCCG             TTTTTCCTCCCGAGA 100 37
HAP49_RS16115 3381082 .. 3381097 + -11.8  -5.46657   CCAAATAAACCCAAG              GCGCGC TGCG GCGCGC               TTTTTTCTTCGGATA 100 33
HAP49_RS16120 3382613 .. 3382628 +  -2.6  -3.55815   TATTAAATAAAGATT              TAATTC CAAC GAGTTA               TTTAAACAAGTCTTT  47 233
HAP49_RS16125 3384304 .. 3384327 + -13.9   -4.8743   GCCAAGGCAAACCCG          CAGTCCGGC CTTCAC GCCGGACTG           TTTATTTCTTTTCAG 100 40
HAP49_RS16130 3386065 .. 3386075 +  -5.4  -3.81488   AGCTCGGTAGCGCGT                 CGAT TAC ATCG                 TTCTATTTGAAGAGG  61 234
HAP49_RS16135 NONE
HAP49_RS16140 3388456 .. 3388483 + -17.2  -4.45945   GTGCGTTTTAAGCAG        CGTCCAACAAAC AAGA GTTTGTTGGACG         TTTTCGTTGATAGCT 100 60
HAP49_RS16175 3396564 .. 3396590 +  -2.1  -3.34398   TTATCCCAGGCCACG         CCGTCGGGC CGGGCGAAA GCCAGCCGG         TATTTGGCGCCGACG  45 134
HAP49_RS16185 3397928 .. 3397966 +  -4.4  -3.89346   GAACGCGGGCATCCC  TGCCCGT-GGGGCGGCG CTCAGC CGCCGCCCAGATAGGCC   TTTCTCACCTCCGGA  59 39
HAP49_RS16215 3403505 .. 3403530 + -17.7   -5.1417   GCCATATTTAGAAAA         GCCCGCTTAAG GCAA CTTAAGCGGGC          TTTTTGCTTTTCTGG 100 37
HAP49_RS16255 3410822 .. 3410861 + -17.2  -4.42788   AGAGAAACTCTGGTT  GAGAAAAGCCCGCTCAGG AAGA CCTGAGCGGGCTTTGTGC   TTTTCTGCCGTTAGC 100 91
HAP49_RS16270 NONE
HAP49_RS16275 3414140 .. 3414152 +  -6.9  -2.78384   CGACGAAAGACTGCA                TGCGG CCG CCGCG                TCTGATGAGACCCAC  49 62
HAP49_RS16295 NONE
HAP49_RS16300 NONE
HAP49_RS16305 NONE
HAP49_RS16310 3421690 .. 3421715 +  -8.9  -3.22298   CGCCGCCCTGCCGAA         CCGATGCGCAC CTCA GTGCGCAGCCG          TTGATACTCCATCAG  67 84
HAP49_RS16320 NONE
HAP49_RS16325 NONE
HAP49_RS16330 NONE
HAP49_RS16335 NONE
HAP49_RS16340 NONE
        lptF NONE
        lptG 3429376 .. 3429396 +    -4  -3.25191   GGCGCTGGTTTATCG            GTTTGACC GGCGG GGTTAAGC            ATTTTCTGAGGTTGA  48 7
HAP49_RS16355 3430363 .. 3430381 +  -7.4  -2.76261   GAAAACAAGAACTTT             CCGGTTAA TAG TTGGCCGG             CTTTACAAATTGGCC  56 142
HAP49_RS16360 3431460 .. 3431476 +  -7.3  -3.64703   ATTTATACTGAGGCT              GTCAGAT GGC ATCTGGC              TTTAGCTAAACACGC  64 73
HAP49_RS16365 3432390 .. 3432419 + -17.9  -2.70932   GTAACATGCCGCTCA       GGGGCTGAATGGC AACC GCCATCCAGCCCC        TGCTTGCCCAGCCGA 100 85
HAP49_RS16375 3434957 .. 3434968 +  -4.4  -2.87522   AGAAGCGGAAGTTCA                CTTC AAGT GAAG                 TCTAGTCTACATTCA  47 213
HAP49_RS16385 3437179 .. 3437217 + -13.1   -2.7185   GCTCCGGCTGCATCG  GGGCGATGGCCG-GCGCC AGCT GGCGCGTCGCCATCGCCA   TGATTGCCACCTCCT  68 103
HAP49_RS16430 NONE
HAP49_RS16435 3448316 .. 3448329 +  -5.2   -3.4052   AGGCAAGACGCCTGG               CCCG ATAAGG CGGG                TTACTTCACTTCGCC  54 170
HAP49_RS16455 3451668 .. 3451699 + -13.1  -3.59979   CCTGGTAACGGACGA      TAACC-TCGGGCGC CCGTT GCGCCCGGCGGTTA      TTTGAAGTCCACCAC  83 33
HAP49_RS16465 3453508 .. 3453523 +  -2.5  -3.64703   GGATTACTATCGCCG              TGCGT AATTGC GCGCA               TTTCGCTAACCGCCG  47 19
        sbcB 3455059 .. 3455074 + -11.8  -5.28176   AGCAGAAAAGGAAAA              GGCCGC GAAA GCGGCC               TTTTTTGTGGCTGAG 100 52
        puuR 3459405 .. 3459431 +  -4.3  -3.68256   ACCGGCGCAGCCTGA        CGCGGGTTGCGC CCCT GCCCA-CCCACG         ATTTTTTCATCGCCG  56 52
HAP49_RS16490 NONE
HAP49_RS16495 3462046 .. 3462068 +  -6.2  -4.39318   AAACGCTGATCCTCT           CCGGCGCA CGCCCGC TGCGCCGC           TTTTCCCTTTAATTC  71 32
HAP49_RS16500 3464279 .. 3464297 + -17.4  -4.43477   ACTTCTGATGCCCCC             GGGCGCGC GCT GCGCGCCC             TTTTCATTCCATCAC 100 33
HAP49_RS16505 3465280 .. 3465296 + -15.1  -4.77157   TGCGCGATAAAAAAA              GCCCGGC GAT GCCGGGC              TTTTTCCTGGATTAA 100 31
HAP49_RS16520 3469100 .. 3469132 + -11.1  -3.55622   CCCGGCCACCACGCA      GGTCGCGTACAGCGC GTT GCGCGGCACGCCGCC      TTTCGACAGCTTGGC  73 485
HAP49_RS16540 3472823 .. 3472850 +   -14   -4.1466   GTTCTAATCTCCCCT        TCTGCGGCCCGC TTCG GCGGGCCGCCGC         TTTTCACCATTCAAT 100 34
         nfo 3473776 .. 3473793 + -12.7  -5.64274   GCCCAAACGACAAAA             CCGGAGC CTGG GCTCCGG              TTTTTTTATGGCTGG 100 47
HAP49_RS16565 3478363 .. 3478384 +  -8.7  -2.62078   CATTTTTTTGACTAC           GGATAACCC TATG GGGTTAACC            CTCTTCTATCATTAC  61 134
HAP49_RS16570 NONE
        torA 3482167 .. 3482192 + -14.8    -5.626   GGGCGCAACGCGTAA         TGCCGGTCAG TTAAGC CTGACCGGCA          TTTTTTTATCCAGTC 100 57
         mtr 3484146 .. 3484165 +   -15  -3.55815   CCAGTAATCCCCGAC            GGGAGGGC TGCC GCCCTCCC             TTTCCCGCACTGTTT  91 34
        yeiP 3484846 .. 3484866 + -18.3  -4.20806   GACTAGTCGCGCCTA            CGGGGCCGA TAC TCGGCCCCG            TTTCATTTTCCGCTA 100 35
HAP49_RS16600 3487935 .. 3487948 +  -2.3  -3.58177   CAGCGAGTTTCTTCT               GTTGG TCTA CCCAC                TTCATTTCGGTTGTG  49 126
HAP49_RS16610 3489516 .. 3489539 +  -9.4  -5.08483   CCCGTACCGTTGCCC          CCCGGATGCC GCAG GGCTGCCGGG           TTTTATTTCGTTTTC 100 43
HAP49_RS16615 3490304 .. 3490329 + -10.3  -3.05844   TGTGTCTATGACTCA         TGCCGGGAGGC TTAC GCCTCCCGCCC          TCTTCCCCTCGCCGC  71 43
        mepS 3491317 .. 3491334 + -14.1  -5.98781   CAAACGAGCGATAAG             CGCCGCC CACG GGCGGCG              TTTTTTTTGGTTGTC 100 70
HAP49_RS16625 3493289 .. 3493325 +  -8.6  -3.68962   TTTAAGCATCTTTAC    CCTGCGCCCGTCCGAA GAATG TTATGCTGGGCGCAGG    TTGTACTTTATTCCA  70 43
HAP49_RS16630 NONE
HAP49_RS16635 NONE
HAP49_RS16640 NONE
        yejF 3499391 .. 3499424 +  -7.4  -3.54488   CTGACCCCGTGCTTG     CCG-ATGCCGTGCCA CTTTT TGGCGCGCCGTGCGG     TGTTATTTCACGGCA  64 521
HAP49_RS16665 3503902 .. 3503918 +  -3.6  -3.76125   TCTGGACAGGTTTTC              GTTGCC CTGCA GGCGGC              TTTCCGTTAAAATGC  54 56
        rplY 3504353 .. 3504382 + -15.9  -3.50393   TTCGGGACGCCGAAA       TAAAGAACGCCGC AATT GCGGCGTTTTTTA        TTGTCTGCGATCCGG 100 60
HAP49_RS16680 NONE
HAP49_RS16685 NONE
HAP49_RS16690 3507808 .. 3507824 + -12.3  -5.90981   CCAAATTCAAGAAAA              CCTGCTG TTA CAGCAGG              TTTTTTTTCGTCTGC 100 38
HAP49_RS16695 3507972 .. 3507988 + -12.3  -5.90981   CCAAATTTAAGAAAA              CCTGCTG TTA CAGCAGG              TTTTTTTTCGTCTGC 100 38
HAP49_RS16715 NONE
HAP49_RS16720 NONE
HAP49_RS16725 3515849 .. 3515864 +  -7.6  -3.72576   AACCGCGTTGGTTTC              CGATGA CGTG TCATCG               TTTGATACCAGCGCC  67 188
HAP49_RS16815 3532326 .. 3532347 + -11.5  -5.03715   GCATAAAGCAAAAAA           CCGCCAACC TTGC GGCTGGCGG            TTTTTTGGCACTCAT 100 65
HAP49_RS16840 3535500 .. 3535519 +  -9.4  -3.65046   TCTCCTGCGTAATAA            TGTAGACA ACTC TGTCTACA             TTATTACGCTAGCGC  70 520
HAP49_RS16850 3536505 .. 3536516 +  -7.2   -3.1355   CACCTCCCGGTAAAA                CGCG TCCG CGCG                 TTCAATATCGCTGAC  56 367
HAP49_RS16865 NONE
HAP49_RS16870 NONE
        rcsD NONE
        rcsB 3543560 .. 3543593 + -19.7  -4.09864   CACGGCAGGTTAACG     CCAAACAGGCACGGC ATCC GCCGTGCCTGTTTGC      TTTTCAGGCCTCGCT 100 50
        ubiG 3550245 .. 3550256 +  -7.2  -3.02144   CGTTATCGGGGTTCG                GCGC CAAC GCGC                 TGTTAGGAAAAATAC  57 65
        nrdA 3552946 .. 3552965 +   -15  -2.70525   AAAGTTTGACCTAGC            GGGCCGGA ATTT TCCGGCCC             CTTCATTTAGCCACG  83 39
        nrdB NONE
HAP49_RS16910 3554662 .. 3554692 + -10.4  -3.88498   TAGGCGGTATGTGCA       GCCCCATTCTGATT GAG AGTCAGTCTGGGGC       TTTCATCTATCCGCC  82 293
HAP49_RS16925 3557240 .. 3557262 +  -5.5   -3.5936   GGTCAATTCCGCCAG          CGA-GCGGGC GCGC GCCAGCGTCG           TTTCCAGCGTTTCGA  57 281
        tyrP 3559670 .. 3559686 + -11.5  -4.72986   AATGATAAAGAGAAA              GGGGCCG CAA TGGCCCC              TTTTTGCTGAGCGTC 100 57
HAP49_RS16945 3562036 .. 3562053 + -14.1  -5.28176   GCTGCCATCCACTCA             GCCGCCC TTTC GGGCGGC              TTTTTTATGCCTGGG 100 47
HAP49_RS17020 3577851 .. 3577866 +    -6  -4.84527   TCGCCCATAAAAAAA              GGCCGC CGAA GCGACC               TTTTTACTGTCTGAA  78 49
HAP49_RS17095 3596686 .. 3596708 +   -17  -3.59946   ATCAGTAATCGCCTG           GGGCGCAGCG CCT TGCTGCGCCC           TTCTCTCATTGCCCG 100 33
        yfbR 3597625 .. 3597669 + -10.5  -3.04144   ATACCCCCATTTCGC GCGCGGCGGCGATGGCGATCG GCG CCATCAGCACCGCCGTCGCGG TGTTGGAAATAAACA  62 265
        ackA 3602682 .. 3602705 + -16.8  -4.20148   GTAATGCTCTCAAAA          CACCGTCAGC CCAG GCTGACGGTG           TTGTTTTAGCCTCAT 100 37
         pta 3604926 .. 3604956 + -18.4  -4.28774   TCAGGTTGAACGATA       AAAAAGCGCCGGTC ATT GACCGGCGCTTTTC       TTTTGCGTTCCCTAA 100 47
HAP49_RS17160 3610354 .. 3610370 + -13.7  -3.87869   CACAGCATAAAAAAA              GCCGGTC GAT GACCGGC              TTTCTCACGCGTTGG  90 44
        yfcG NONE
        folX NONE
HAP49_RS17185 3613845 .. 3613860 + -11.8  -2.64973   TGACGTTGTCAATCA              GCGGGC CGAA GCCCGC               TGATCTGAGGTTACT  73 7
HAP49_RS17265 3629367 .. 3629411 + -10.5  -3.12142   CCAGCCGGTGAAATG GCTGCAGCGCCAGCGCCTTGT CCT GCAAGGCGATGCCGGGGCCGC TGTCTTCAATCTCCA  64 183
HAP49_RS17285 NONE
HAP49_RS17290 NONE
HAP49_RS17295 3635023 .. 3635043 + -19.7  -2.84325   CCGAGTAACGCGAAA            CGGGCGGGG ATC CCCCGCCCG            TGGTGTTTAACGGCG 100 33
HAP49_RS17310 3638623 .. 3638637 +    -7  -3.53012   CGGATCGTTGACCAC               CGGCAG CGC CAGCCG               TTTGCGCGCCAGCCA  57 178
HAP49_RS17335 3643740 .. 3643763 +  -3.8  -4.15044   CCGCATAGCGGCTCA          GTTTGGCC GCCAGATA GGCCAGGC           TTTCTTCCGGCGCCG  63 410
HAP49_RS17345 3645696 .. 3645717 +  -9.5  -3.43071   TCAGCTCCCGCACCT           GATCCAGACG CAT CGTC-GGATC           TTCCTTGGTATCGAG  65 379
        pepT NONE
        apbE 3650464 .. 3650481 + -14.1  -3.14564   TTCGGGCAGTAAAAA             GCCCGCG AAAA CGCGGGC              TTGATGGCGAGGTGA  86 465
        mnmC 3654045 .. 3654055 +  -4.6  -3.87373   GGCGAGAGTTCCCCG                 GCGG CGA TCGC                 TTTGTGCAGGCTCTC  60 148
        smrB 3659359 .. 3659387 + -21.9  -4.15044   CCCCCTCAGAAACGA        CTCAGGGCGATGT CAG ACATCGCCCTGAG        TTTATTCCGCACCGC 100 42
        fadL 3666003 .. 3666018 + -11.8  -5.31519   GAGATGGATGCCAAA              GCGCCC CGCG GGGCGC               TTTTTCTTTGCCTGT 100 49
HAP49_RS17495 3675166 .. 3675176 +  -2.4  -3.79906   TATTGAGCAAACGCA                 CCGC TAA GCGC                 TTATTCTGCGGGTAA  50 85
HAP49_RS17500 3675386 .. 3675403 +  -3.3  -3.34192   AGATCCGATTTCCCC             CGCGCGT TATG ATGGGCG              TTAATTAAAAAACTT  47 101
HAP49_RS17525 NONE
HAP49_RS17530 3681543 .. 3681572 + -26.5  -3.49475   GCTTTTCCCTGAATG       CCGCGCCCGGTGG GTAA CCACCGGGCGCGG        TTCTATCGGCCTAAG 100 61
        dsdC 3682894 .. 3682915 + -12.3  -2.59039   ATCATGAAAATCTCC           CCTCTGGTC TGAT GGCCAGAGG            ATTATCGCCATACTT  73 14
HAP49_RS17555 3686045 .. 3686074 + -15.1  -4.15044   TGATTGCTCAGAACG       CAAAAAAGGCCGC GCAA GCGGCCTTTTTCG        TTTATTGACGCAGCG 100 38
HAP49_RS17565 3688374 .. 3688387 +  -9.5  -3.28712   TTTGATCCTCCCAAT               GCCCC GGTC GGGGC                TTATCCAGCGCGCAC  70 480
HAP49_RS17590 3695412 .. 3695429 + -14.1   -4.1891   ATACCCGATTTTAAA             GCCCGCC ACAC GGCGGGC              TTTCTGTTCACGACG 100 262
        ypdK 3696684 .. 3696715 + -17.4  -3.60296   CCACACCAGGAACAC      AGACAAAGGGACGC GCAA GCGTCCCTTTGTCG       TTTCGGCTAGCGCTC 100 47
HAP49_RS17620 3700672 .. 3700693 + -17.3   -2.6621   ATGCGCTGACCGCCC           GCCCGTGGC ACGC GCCACGGGC            CTCTTTCGCTGTGGT  95 32
HAP49_RS17625 NONE
HAP49_RS17630 3703661 .. 3703677 +  -3.7  -3.43328   ACAATCGTTCACCGG              CGATTAA CAA TAAATCG              TTGATATCTTTGATG  50 499
HAP49_RS17640 3705171 .. 3705196 + -20.5   -5.4505   CTGCGAAAACGACAA         GGGGCGCAACC TGCG GGTTGCGCCCC          TTTTTTATTGCCCCG 100 45
HAP49_RS17650 3707903 .. 3707922 +  -4.2  -4.07568   AATCCGGCGATACTC            GTCGCG-CG AGG CGTCGCGAA            TTTTACCGAGGCACA  61 187
HAP49_RS17665 NONE
        mgrA NONE
HAP49_RS17680 3713388 .. 3713421 + -14.5  -4.27316   GACGACCGCGATTAA     CAACGACGGGCCGGCG CAA CGCCGGCCCG-CACTG     TTTTCGCTTACAGCA 100 26
HAP49_RS17690 3716254 .. 3716269 + -11.8   -5.4505   TCACAGCAATGATAA              GGCGCC TGCG GGCGCC               TTTTTTATTGGCCGG 100 50
HAP49_RS17705 3717670 .. 3717692 + -11.3  -5.38054   ACCGCCATGAAAAAA          GCCCCG-GGA TTGC TCCTCGGGGC           TTTTTCTTTATGGCG 100 43
HAP49_RS17715 NONE
HAP49_RS17720 NONE
HAP49_RS17725 NONE
HAP49_RS17730 3719812 .. 3719839 + -17.2  -2.91395   CGACCCACCAATTCA        GAAAAAAGCGCC TTTT GGCGCTTTTTTC         GTTTCTGCGCCACCT 100 31
        fepB 3721288 .. 3721314 +  -9.4  -2.71712   AGCCCTGAATCACGC         CGTCGGCAGG TCAGCCC CCTGCCGACA         CTTTCCGCAAGCGGG  62 33
        fepD NONE
        fepG NONE
HAP49_RS17750 3724414 .. 3724431 + -14.1  -3.39742   CGCAGGCATGAAAAA             GGCCGGG TTAA CCCGGCC              TCTTGGTTATTTCTC  88 30
HAP49_RS17770 3730039 .. 3730053 +  -3.4  -2.86343   TGACGCGGCCGCGCA               GCGCCG GAT TGTCGC               TCTCGTCCTTCAGCT  42 48
HAP49_RS17785 NONE
HAP49_RS17790 3733637 .. 3733651 +  -2.1  -3.72695   CCATCGGGAACAGCG              TC-GCC GGAT GGCCGA               TTTCCTGCACCACCT  52 266
HAP49_RS17800 3735454 .. 3735486 +   -10  -4.25104   CAGTTCAGCTTTTCT     TC-AACGGCTTGACC AGGT GGTCAAGCCCTTCGA      TTTTAATCGCCAGCG  83 65
        cysZ 3739804 .. 3739822 + -13.1  -3.58854   CGGAAATTTTCGACA             GGGCGCG CATTT CGCGCCC             TTATCATTGTGCTTA  83 66
        cysK 3740946 .. 3740961 + -10.4  -5.26316   CAAATCGCTAAAAAA              GCACCC TGCA GGGTGC               TTTTTTGTGGACTGG 100 54
        ptsH NONE
        ptsI NONE
         crr 3743938 .. 3743954 + -15.1  -5.66684   ATGAGCAGTAAAAAA              CGGCGCC CTT GGCGCCG              TTTTTTTATCCCTTC 100 56
HAP49_RS17895 3754217 .. 3754233 +  -5.1  -3.01924   GCTTCTCGTACATCT              CAACCAC CGT GTCGTTG              TCTTCGCGCACCATG  47 147
        amiA NONE
        hemF NONE
HAP49_RS17915 3757080 .. 3757098 +   -16  -2.66812   TGCTGCAGGCGAAAC             GGGCGCAG TGA CTGCGCCC             TGCTCTGCTGCGGTT  86 15
        mmuP NONE
        mmuM 3766163 .. 3766173 +  -6.8  -3.45023   CGGCCAAGCGGTATA                 CGTC TGT GACG                 TTCTCATAGTGGTAA  57 256
HAP49_RS17985 3772162 .. 3772184 + -12.7  -4.45664   TAAACCATAAAAAAA           CCCCGTAGC CGAAT GCTGCGGGG           TTTTCATTGAGTTAA 100 38
HAP49_RS17995 3774199 .. 3774221 + -13.5  -5.03314   TGAGGAGATCGTTGA           GGGTTCAGC CTGGC GCTGAACCC           TTTTTTGCAGGTGCC 100 50
        rpiB 3781036 .. 3781063 + -10.5  -2.75825   GCCTGCCGTCTCGAT        GGCGGTCGCGCG CAAGC CGCGCT-CCGCC        TGGGTTTATTCGGCA  69 44
         tal 3782143 .. 3782156 +  -3.1  -2.79183   GAAGCTGGAAGACAT               GTTGG CCGC TCAAC                TGTAATCGCACTGGA  41 7
         tkt 3784201 .. 3784219 + -14.6   -5.8187   CCAGCCGATAAAAAA             GCCGGTCA TCA TGACCGGC             TTTTTTTATTCCATC 100 52
        narQ 3786945 .. 3786960 +    -6  -3.70076   AGTCCCACTGTGAAG              CACGCC TCCG GGCGCG               TTTGAGTGGCTTTAC  62 135
HAP49_RS18055 3787635 .. 3787660 + -13.2  -2.50816   AAGCCACTGATCGCC         CCGCCCCGGC CAATAC GCCGGGGCCG          CTTACTCGATGGCGC  77 31
        acrD 3791391 .. 3791414 + -14.6  -4.41348   CGAGATATAAAAAAA          GCAGCGTCGG GTTA CCGATGCTGC           TTTATTTCGAACGAA 100 45
HAP49_RS18075 NONE
HAP49_RS18080 3792841 .. 3792851 +  -2.4  -3.36273   GCGGAAAGGCAACCG                 CGCC GAC GGCC                 TTCCTGTTCGAAGCG  45 172
HAP49_RS18090 3794276 .. 3794290 +  -5.6  -3.82097   TTTTAACAGCCCCGC               CGGCGA AGA TAGCCG               TTTCATCAATTTGCC  61 90
HAP49_RS18095 NONE
        dapE NONE
HAP49_RS18105 NONE
HAP49_RS18110 3796836 .. 3796861 + -11.1  -4.56597   CGAAAAAGAAATGAC         ATCAGGGCGCT CATC GGCGCCCTGAG          TTTTTAGCGAAAGGC  95 27
HAP49_RS18145 NONE
         bcp 3804847 .. 3804873 + -18.8  -4.23213   CAGCAGTAATTCTCA         CGAAGCGCAGCG GCC TGCTGCGCTTCG         TTTCTTCCCTGTCAG 100 32
HAP49_RS18160 3807087 .. 3807103 +    -8  -2.56596   GACGCCGGGCATCAT              TTGCCG TAAAC CGGCAA              TCAATTCGTCGCCCG  58 83
HAP49_RS18175 3808333 .. 3808356 +    -6  -2.59431   GCATCTGCATCGGCA          CCGACCATTCG GCT CGGGT-GTCGG          TAAATTGTGGCAGCA  46 219
HAP49_RS18185 3809419 .. 3809438 +  -9.2  -4.09739   TTGGGAAAATGAGGA            CGGGAACG TTGC CGCTCCCG             TTTTGACGACCTTAA  77 29
HAP49_RS18200 NONE
        arsC 3813556 .. 3813575 +  -9.2  -4.67048   TGTAAATTCGAATTC            GGGCGCGG ACTA TTGCGCCC             TTTCTTTTACGGTAG  90 36
HAP49_RS18215 NONE
HAP49_RS18220 3815393 .. 3815412 +   -15  -4.51197   TGCCATCAGTCAAAA            GGGCAGCC CCTG GGCTGCCC             TTTTCGTTACTTCTG 100 47
        purM NONE
        purN 3819369 .. 3819387 + -13.1  -5.81032   TGAACCTTGCCTAAA             CGGCGCC CACGC GGCGCCG             TTTTTTTTCGCCTTC 100 52
        speG 3820032 .. 3820045 +  -9.5   -5.4505   AGAAAAAAGAAAAAA               CCCGC CCAG GCGGG                TTTTTTATTGGGAAA 100 50
HAP49_RS18250 3820485 .. 3820497 +  -3.3  -4.08767   CCTACGCATCAGCCA                TCCAC GCT GTGGC                TTTTCGGCCGGTGGC  58 91
        ppk1 NONE
         ppx 3830183 .. 3830201 + -11.7  -5.27335   CCGCCTGATCCCCCG             CCCCCTG CCAGT CAGGGGG             TTTTTCTTTCCGCCC 100 33
HAP49_RS18285 NONE
        mgtE 3832087 .. 3832103 + -10.8   -4.8269   TGTAAGACGCTCAAA              GCCGGC CCCGC GCCGGC              TTTTTCGTCATTCTG 100 36
HAP49_RS18295 3835604 .. 3835636 + -10.5  -2.97166   TAACCTTCTCCCCCC      TCTCAGGCGCCGTCT CCC AGGCGGCGCCTCGCA      TCTCGTTCGTTACAT  70 38
HAP49_RS18300 3836476 .. 3836496 +  -8.2  -3.63515   CGCCGCGCGCTTCAG            CTGCACCC CGAGC GGGCGCAG            TTCTTCGGGCTGCAG  65 361
        yegD 3839162 .. 3839187 + -16.9  -4.15222   GTTCCGTTGACAGCC         CAAGGGCGCGG CTCG CCGCGCCTTTG          TTTATTGGAGGCCCT 100 31
HAP49_RS18315 3840151 .. 3840166 +  -2.4  -4.55023   TTATTGCCGCGCCGG              TCCGGC AACA GCAGGG               TTTTCTCGTCTTCGA  68 404
HAP49_RS18330 NONE
HAP49_RS18335 NONE
        mdtC NONE
        mdtD NONE
        baeS NONE
        baeR 3853132 .. 3853142 +  -2.4  -3.56092   GCCAAGAAACTCTTG                 CGGC ACC GGCG                 TTTGGGCGATAATGC  49 498
HAP49_RS18370 3854014 .. 3854036 + -20.6  -4.35524   ATCCCCCGTTTCACC           CGCGCGGTGG CGG CCACCGCGCG           TTTTCCGTTTGACCG 100 40
HAP49_RS18375 3855538 .. 3855557 + -11.4  -4.59511   GGGCATAAAAATGAA            TCGCCGTC ATTC GGCGGCGA             TTTTTAGCAAATATT 100 33
        yegS 3856907 .. 3856931 + -13.5   -3.6796   TGCTGGGCTGACCTT          GTCGGGCGCAG CCG CTGCGCCCCGC          TTCTTCCCCTCTGTT  90 30
HAP49_RS18385 NONE
HAP49_RS18390 NONE
HAP49_RS18395 3860697 .. 3860712 + -11.8  -3.94746   ACCCTAACGCCAGAC              GGGGCG GCTT CGCCCC               TTTGCTTACCTCTCC  86 34
HAP49_RS18400 NONE
HAP49_RS18405 3863561 .. 3863580 +  -6.4  -3.85698   TTGGCATCACTGAGT            TCC-CCTGC CTG GCGGGTGGA            TTTATCCCCCCGCCC  64 28
HAP49_RS18410 3864358 .. 3864380 + -12.7  -3.34398   ATCAATCGCTTAGCG          CGCCGGGGGC GATC GCCCCCG-CG           TATTTGGCCACGCAA  82 40
        fbaB 3865622 .. 3865637 + -11.8  -5.24531   ACCGCCTGTCCCAAA              GCCCGG TTCG CCGGGC               TTTTTTGTGCCCGCT 100 49
        srlA NONE
HAP49_RS18425 NONE
        srlB NONE
        srlD NONE
        gutM 3868983 .. 3868993 +    -4  -3.61398   TAAAAGGCATTACCT                 TTCA TAG TGAA                 TTATTCAGCGAGGGA  52 52
HAP49_RS18445 NONE
        gutQ 3870784 .. 3870811 + -19.8  -3.06509   ATCGGCTGATCAACG        CCGGGGGCGCCG GCAG CGGCGCCCCCAG         TCTGATTATTTCCAG 100 32
HAP49_RS18475 NONE
        mdtN NONE
HAP49_RS18485 3877317 .. 3877327 +  -8.2  -2.78384   GGCCATGCACGCCCG                 GCGC CAT GCGC                 TATAGTGAGCAAAAA  59 55
HAP49_RS18490 NONE
HAP49_RS18500 3880445 .. 3880476 +  -2.2  -2.71268   TCATGGCCGCCGCCC      CCTGCATGATTC-GC TTC GCAGCGTCATCCGGG      TAATGTATAGTCCGC  39 88
        rluF 3881395 .. 3881412 +  -9.8  -5.31275   GCCTTCCCCCGTTCA             GCCCGC CGTTGC GCGGGC              TTTTTTATCGTGAAA 100 43
HAP49_RS18520 NONE
HAP49_RS18525 3887745 .. 3887755 +  -8.2  -3.53091   TTCAAGGTTGCGCTC                 CCCC TCC GGGG                 TTTGCGCCCCGGCCT  63 82
HAP49_RS18535 3889226 .. 3889245 + -12.2  -3.65902   TCATATAAAGAAAAA            CCCTCTGT AAAA ACAGAGGG             TTTCAGTCACGTCGG  85 229
        xseA 3894118 .. 3894138 +  -8.3  -3.53012   CGATATCCAGCATGA            TGCGCTG ATGGTCA CAGCGCA            TTTCCCAGCGCAGCC  63 160
HAP49_RS18565 NONE
HAP49_RS18570 NONE
HAP49_RS18575 3900626 .. 3900637 +  -2.2  -2.90751   GGCACAGGTAATCCA                CC-GC CCC GCAGG                CTTTCAATTCTTGCA  40 104
        suhB 3921571 .. 3921588 + -12.7  -5.61596   GCGAATCGAAAAAAA             GCGCTGC CGAT GCAGCGC              TTTTTTTATGCCCGT 100 50
        csiE 3924678 .. 3924695 +  -2.6  -3.14564   GCGCCAGGCCATCCG             CGCGCT GCTGGA AGCGCC              TTAATCAACGGCTGA  42 4
        hmpA 3928809 .. 3928838 + -14.9  -2.77455   GGTGCTGTAATGCGT       GCGGAGCGCGGCC GTCA GACCGCGCTCCCC        CTTCATTTCTCCTGC  84 31
        mltF 3952547 .. 3952562 +  -5.4  -5.47159   TATCCGCCGCCCGCT              GCGC-CA GCC TGAGCGC              TTTTTTCTGTTCGCG 100 52
HAP49_RS18810 3954218 .. 3954245 + -15.6  -3.63991   GTACCGATAAAAGCA        ACCAAGGGCGGA ATTC TCCGCCCTTGGC         TTATTCCAGCTGCTG 100 46
HAP49_RS18830 NONE
HAP49_RS18835 3958535 .. 3958551 + -15.1  -4.45771   CCGCAGGACTGACAA              GGGCGCC ATA GGCGCCC              TTTCTATTTTCAGCT 100 45
HAP49_RS18875 3966790 .. 3966815 +  -9.7  -2.70932   CGATATGTACCTGCA         GCTGATGCTCGG TTT CCG-GCACCAGC         TCGTTCAGCGCACGC  57 348
        nadB 3970983 .. 3971001 + -13.1  -4.56914   TTAAACCATGCGACA             GGGCGCC TTATC GGCGCCC             TTTTCCTTTCAGTAA 100 37
        srmB 3973236 .. 3973251 + -10.4  -5.61596   CTGTTCAAGAAAAAA              CCGCCT TTAC AGGCGG               TTTTTTTATGGGCGT 100 47
         ung 3976592 .. 3976607 + -10.4  -4.56969   TCCAGAGACAAAAAA              GGCACC CTCG GGTGCC               TTTCTTTATGCCGTT  91 41
        nadK 3978264 .. 3978279 +  -3.3  -3.80279   TAAAACCAGTTTATA              CTGTA TGAAAC TACAG               TTATGTGTTTATACA  52 68
        recN 3979990 .. 3980027 +  -2.7  -2.89564   CTCAACTTTTTCACT   TTCCTGCGGTCTGACAGT GAC GCTGTTGGCCCG-AGAAA   TATCTAAAGTGCGGC  42 46
        bamE 3980649 .. 3980669 + -14.1  -5.61824   CTTCAGATAAAAAAA            TAAGGCGCT ATA AGCGCCTTA            TTTTTTTGCCTTTTC 100 126
        smpB 3982058 .. 3982076 +    -3  -2.86539   AACTTCTGGTATACT             GCACAAAG TTA CTTGGGGC             TGATTCTGGATTCGA  41 61
        ssrA 3982483 .. 3982504 + -10.1  -5.38047   GATAATAGCGAAAAA           GCCCACAAC TTCG GTTGCGGGC            TTTTTTGTATCCGTA 100 73
HAP49_RS18990 3985457 .. 3985482 +  -4.1  -4.44819   AGTAACTGAATCAAA         TCGCTTATGCTA TTG TA-CATTAGCGA         TTTTGATGTGTTATC  69 100
HAP49_RS19015 3992199 .. 3992212 +  -3.7  -2.59069   AGCATCAGTATGGCA               GCCAG TCTG CGGGC                ATGGTTTTTGTCACT  43 354
HAP49_RS19040 3995958 .. 3995973 + -11.8  -3.55563   TATAGCCAAAAAAAA              CCCCGC CACA GCGGGG               TTTAACGCATCACAT  82 36
HAP49_RS19060 3999741 .. 3999788 +  -4.6  -4.33928   ATCCACCTCGGCCAG GTCATCCTTGTGCTGCTGCGCG CTGT CGGTCAGCAGCACTCGTTTGGC TTTGTCTTTCGCCTC  68 221
HAP49_RS19070 4000430 .. 4000450 + -19.7  -3.32844   CGTCTGCTGAACGCT            CGGGGCGCG CCC CGCGCCCCG            TTATCGCCTCAGGCG 100 31
HAP49_RS19085 4001584 .. 4001606 + -16.3  -4.87133   TAAATAATTCATCGA           TGGCCGGCG TCTAT CGCCGGCCA           TTTTATTTCGGCAAT 100 34
HAP49_RS19095 4002717 .. 4002750 +  -5.9   -3.3676   GCGGCGAACAGCATT     GATAGCG-GGCGCTGT CGC ACAGCGCCTCTCCCTC     TTCTGGCGTATTGAG  57 24
HAP49_RS19100 4003230 .. 4003254 + -12.2   -3.2963   TTGGCCCACGGCTGA         TCGCGTCCCCC GGGC GGGGGAC-CGA          TTATAGGAACATGCT  79 26
HAP49_RS19120 NONE
HAP49_RS19125 4007962 .. 4007987 +  -2.4  -5.33785   TTGTGGTGTTTTTTA         GCGGCCTGAGC TTTCT GCACTGGC-GC         TTTTTTGTGGTGCTT  84 258
HAP49_RS19135 4008851 .. 4008873 + -14.8  -4.10159   AAACAGATGTGCGTC           TGGCCCGCGG AAA TCGCGGGCCG           TTTAATTTGCGTGTT 100 63
HAP49_RS19145 4010843 .. 4010867 +  -8.5  -2.71712   AATAATGCGTTCGCC          TCCCCCTCTTC TCT GAGAGGGGGGA          ATTTCCCACCCGCAA  59 36
        nrdH NONE
        nrdI NONE
        nrdE NONE
        nrdF 4014868 .. 4014894 + -15.2  -2.55015   CTGAGGACATGACAA         CGATGCCGGTCT TTC AGGCCGGTATCG         TGCATTCAATACCCT  83 37
HAP49_RS19195 4019159 .. 4019180 +  -5.9  -2.57931   CCACCAGCGCGCTGA           C-GGTCGTGA CGA TCACGATCAG           ATTCTGGACGGTGAA  46 357
HAP49_RS19205 NONE
HAP49_RS19210 4023025 .. 4023041 + -11.5  -5.55769   TACTGATGACTTTTG              CCCGGCC TCT GGTCGGG              TTTTTTATTATCCGA 100 131
        proV NONE
        proW NONE
        proX 4026706 .. 4026716 +  -2.4  -3.53224   AGCCGTAACCGTTCA                 GGGG CGC CGCC                 TTTGCCGCGCCCCTA  47 33
HAP49_RS19240 NONE
HAP49_RS19245 NONE
        ygaH NONE
        mprA NONE
HAP49_RS19260 NONE
        emrA NONE
        emrB 4035047 .. 4035066 + -16.4  -5.60993   CTTCAATAAACGAAA            CGGGCGCC CTGG GGCGCCCG             TTTTTTTATCCGACG 100 42
        trxC 4036857 .. 4036876 + -12.1  -5.31456   AACGCCCCCGATCGA            GCCCGCC CCTCCC GGCGGGC             TTTTTTCTGCGTTAC 100 78
HAP49_RS19285 NONE
HAP49_RS19290 4040384 .. 4040395 +  -5.8  -4.80417   TAATGGTATTATCGC                CCGA TTAT TCGG                 TTTATTGTTTTTATG  78 105
        pssA 4041825 .. 4041842 + -14.1  -5.07486   TAAGCGGTATGCTGA             CCCCGGC CAAG GCCGGGG              TTTTTATTACAGCTG 100 38
        metN NONE
        metI 4051381 .. 4051397 +    -3  -2.78384   CCATAAATAGTTTCA             C-CGCAT GTTA ATGCGAG              TCTAATGAGGAAGGG  41 31
HAP49_RS19345 4052263 .. 4052286 + -16.8  -3.91716   TTATTCCTATAATTG          CAAGACGGGC CAAG GCCCGTCTTG           TTATTTCCGCCATAG 100 58
        rcsF NONE
        tsaA 4053541 .. 4053551 +  -5.4  -2.57132   ACTCTGGCAGCCCGA                 TGCA ATT TGCA                 GTTCTAACGGAACCA  47 113
        proS 4055318 .. 4055331 +  -9.5  -5.80817   CCAGAGAATAAAAAA               CCCGC CTAG GCGGG                TTTTTTTATATTCGA 100 51
HAP49_RS19380 NONE
         rof 4057718 .. 4057742 + -12.2  -2.92667   GTAACCCCATCCCAA         C-AGGGCAGCC CGAC GGCTGCCCTCG          TCATTTACGGCTTCA  76 47
         map 4090203 .. 4090220 + -14.1  -5.26316   TGCAGAATGTCACTA             GGCCGGC TTAT GCCGGCC              TTTTTTATGGGCTGC 100 61
        glnD NONE
        dapD 4093770 .. 4093790 + -15.5  -5.72616   TCGACTAAATTGAAA            TAGCGGGTG ATT CACCCGCTA            TTTTTTTGTCTGCGT 100 33
HAP49_RS19530 4094312 .. 4094330 +  -8.8  -4.99134   CCGCATCATCGCCAA             GGCGCC CTTTTGC GGCGCC             TTTTTACTTTACGAT  93 56
HAP49_RS19560 4105972 .. 4106001 + -13.6  -3.75115   GGATAGAACAAAAAG       TTGGGGGCACTG CGTTAA CAGTGCCCCCGG        TTCGTTTTATAGCCA  90 78
        queF NONE
HAP49_RS19575 4109553 .. 4109576 + -10.9  -5.27923   GCCTGACCCTCAATC          CCGGGCGGC GTAACG GCCGCCCTG           TTTTTTCTGACCTTA 100 35
         xni 4110357 .. 4110376 +   -15   -3.2048   CTGCCGATACAATAA            GGGCGCTG CAAG CAGCGCCC             TTCATCAGGTTTAAC  90 26
        csdA NONE
        csdE 4115393 .. 4115425 +    -4  -4.18164   AGGTGGCGGTGACCA     TGG-TCGCCGCGCCG AAAC CTGCGCTGCAATCCA      TTCTTTTCGGCCCTT  63 96
HAP49_RS19625 4117639 .. 4117654 +  -6.8  -5.05577   CCCGCAACCAACCGA              TGCCGC ATTG GCGGTA               TTTTTCCTTTGGTTT  86 31
HAP49_RS19630 NONE
HAP49_RS19635 4117933 .. 4117946 +  -8.1  -5.76633   ATGACAACAGATAAG               CACCC TGAC GGGTG                TTTTTTTGTATCTGC 100 48
        argA 4121073 .. 4121090 +  -2.7  -3.76224   CCTGAGATTTATGCA             CCGTC-AT GGC ATAGGCGG             TTTCATGCGTCGGCA  52 279
        mutH 4140944 .. 4140958 +  -2.8  -3.93262   AGCGCCACGATAAAC               GCGT ATAATTC ACGC               TTTGCATTTATTAAG  54 77
HAP49_RS19715 4141711 .. 4141745 + -12.3  -3.36785   ACGCGCCGGAATAAC    GCGATACGGAAGCCGTC ATC GGCGGCTTCC--ATCGC    TTCGTTGACCTCTCA  80 27
HAP49_RS19720 4142201 .. 4142218 +  -4.1  -3.42354   GCGACATCGCCGCCC             GACGG ACTTTGCG CCGTC              TTCTGAATTGGGCTC  50 144
HAP49_RS19725 4143334 .. 4143359 + -13.3  -3.53444   GGCGCCTTGATAGCC         TGAGGGCGCAGC CTG GCTGCGCCC-CG         TTTCACCGCCGCTGA  86 31
        galR 4150626 .. 4150636 +  -6.8  -3.23296   CTTTTGGATTTTTTC                 CGCT CCC AGCG                 TTCGTGCATATTGTT  58 107
HAP49_RS19750 NONE
HAP49_RS19755 4151421 .. 4151450 +  -4.9  -4.07687   AGTTCTTCGATGGTT       TGGCG-GCGGCG GATCAAA CGCGGCTCGCCG       TTTTCGAACAGCACT  63 90
HAP49_RS19765 4154184 .. 4154196 +  -5.5  -2.80016   CGGACGGGCGATCAG                GTTGG GAT CCAGC                TCGTTGGTGATGCGC  46 506
HAP49_RS19775 NONE
HAP49_RS19780 4156354 .. 4156376 +   -17  -2.82623   GCTGGCATAACCCTG           CTCGCCCCGA TCG TCGGGGCGGG           TCATTCTACCCGCAC  95 31
HAP49_RS19790 4159027 .. 4159046 + -16.4  -4.42238   GCATAACTCACGAAG            CCGGGCGC AAGC GCGCCCGG             TTTTCGTTCAGATGC 100 35
HAP49_RS19825 4165816 .. 4165826 +  -3.2  -5.21709   ATCTGTTTTAACGAT                 CGAT AAA GTCG                 TTTTTTCCTATGGAA  76 383
HAP49_RS19845 4168936 .. 4168949 +  -5.2  -3.35542   CGGCCGTAAAAAGAC               GCGG GGATTA CCGC                ATTTTTGGACATGAA  54 66
HAP49_RS19850 NONE
        lldD 4172228 .. 4172244 +  -2.1  -4.08216   TGTCGCCGTGCCCGA              ACTGCTC GCC GCGCAGG              TTTTGCCAGGCATAA  57 269
HAP49_RS19875 4175726 .. 4175741 + -11.8  -5.63517   CCTGAGCGGGTCTTT              GCCCCG TTAC CGGGGC               TTTTTTATTTCCGCC 100 66
HAP49_RS19880 4176631 .. 4176646 +  -3.2  -3.53811   AACAGCTTGAACACC              GCCATC GGCG GATCGC               TTTGCGCCACCTGCC  51 381
        betI 4178759 .. 4178771 +  -7.7  -2.72344   GAGGCGATGAGCGAT                CACCA GCG TGGTG                TGGTTGCGGCTCACC  52 203
HAP49_RS19900 4181828 .. 4181845 +  -8.3  -3.91084   AGCGCCAGCAACGTG             CGGCGCC CGGC GGCGGCG              TTTGCTTGGCGATCG  71 449
HAP49_RS19915 NONE
HAP49_RS19920 4184761 .. 4184791 +  -3.1  -4.78572   TTAAACGCGCCTGAT      GCTA-CCGGCCCGC CATC GCGGGCCTCATCGC       TTTTGTTGCTTCCAG  70 27
HAP49_RS19925 4185400 .. 4185430 +  -3.7  -4.07568   TGGCAAAGGAAACGT       CCACCGGCGCGGG GTTAA CCGGCGGCAGCGG       TTTTCGGCAACACGA  59 192
HAP49_RS19940 NONE
HAP49_RS19945 4188817 .. 4188834 +  -4.7  -4.41616   TTCCACCGCGTCCAC             GGCGCAC AGAT GCGTGCC              TTTCTTTCCCCGCGT  66 108
HAP49_RS19950 4190272 .. 4190286 +  -5.6   -3.1162   TCACGTCCTCCTCAG               TCACGC TCA GCGTGC               TGTTGCCGTATTTCT  51 294
HAP49_RS19975 NONE
HAP49_RS19980 4197899 .. 4197920 + -11.5  -3.62597   GTAGACGAAAAAAAA           CCGGCGCAG TTGC CTGCACCGG            TTGTTGCACGCTAAA  79 405
        fldB 4204742 .. 4204753 +  -3.6  -3.85698   AGCCGCTGCTGTAGC                CGCT ATCG GGCG                 TTTCTCCCCAAACGC  57 27
        ygfZ 4206792 .. 4206822 + -13.9   -4.2704   GAAGAGAAATAATCC       GTCGGCCGCAGGC CCCCT GCCTGCGGCCATC       TTTGTTACTCGTCCA 100 29
HAP49_RS20045 4209149 .. 4209163 +    -7  -3.26031   CGCCGTTAAACGCAT               CCCCCG CGC CGGTGG               TGTCTTTCGGCTGCG  55 233
HAP49_RS20110 NONE
HAP49_RS20115 NONE
HAP49_RS20120 4221872 .. 4221903 +  -3.1  -4.90079   AGCGGCCAGGGCTTA     GCGGGCGATGCGTATC ACC GA-ACGCA-CGTC-GC     TTTTCTTGTTCAGAT  70 39
        zapA NONE
        ssrS 4233238 .. 4233251 +  -2.3   -4.1523   GGCATCTCGGAGATT               CCCCT TCTC AGCGG                TTTATGTGTGCTGAA  57 24
HAP49_RS20175 4233906 .. 4233923 + -12.7   -4.8622   GCCAAAATAGCAAAA             GGCCGGA TCGC TCCGGCC              TTTTTCGTTGCGGCA 100 31
HAP49_RS20190 4237245 .. 4237262 + -11.3  -4.67982   ATTAAAACGAAAAAA             GGTTCGC CGCG GCGAACC              TTTTCTTCAATACCA 100 36
HAP49_RS20210 NONE
HAP49_RS20215 NONE
HAP49_RS20220 NONE
HAP49_RS20225 4244708 .. 4244733 + -13.3  -3.56643   GGGGTCTTGCAAGAC         GCAGGGTGGGT TTCG ATCCGCCCTGC          TTTGCCACGTCTGAA  86 43
        yiaK NONE
HAP49_RS20235 NONE
HAP49_RS20240 NONE
HAP49_RS20245 NONE
        ulaD NONE
HAP49_RS20255 NONE
        araD 4251641 .. 4251651 +  -6.8  -2.78384   CATTCGCTCATCGAC                 GCGA AAT TCGC                 TATCATCCGCACCCA  53 123
HAP49_RS20265 4252822 .. 4252841 +  -7.1  -5.06103   ACCGCCTCTCTGGCC            TCGCGCG CCTGAA CGCGTGA             TTTTTTAGCCGTTCT  86 463
HAP49_RS20275 NONE
HAP49_RS20280 4255279 .. 4255311 + -19.1  -3.36327   CAAATAACCGCGCCA      GCGCCCGCCGCAGTA GCC TCCTGCGGCGGGCGA      TTATCAATCGACTCC 100 34
HAP49_RS20285 4256851 .. 4256866 + -11.8  -3.19509   GCCTGCAATAAAAAA              GGGGGC CAAG GCCCCC               TCTCTGTTATTCCGC  79 84
HAP49_RS20295 4258624 .. 4258641 + -12.7  -4.21194   GCTGAAAACGAAAAA             GGCTCCC CGCA GGGAGCC              TTTTGCATCGTGCAA 100 36
HAP49_RS20335 NONE
HAP49_RS20340 4269365 .. 4269385 +  -4.5  -4.50627   CGCTGCCCCACGCGC            CAGCCCTCT GCA GGCGGGCCG            TTTATTTCATGAATA  68 170
        brnQ 4270767 .. 4270785 + -14.6  -5.27923   CCGCCCATAAAAAAA             GCCGGTCA TGA TGACCGGC             TTTTTTATCGGCTTG 100 50
HAP49_RS20355 4273807 .. 4273826 + -16.4  -5.69473   AAATAACCACGAGAA            CGCCCGGC AACC GCCGGGCG             TTTTTTTATCGTCTC 100 35
HAP49_RS20430 4288607 .. 4288622 +  -6.8  -3.90744   ACCTTAGTTTCCTAC              CTCGGC CTAA GCTGAG               TTATTTCAACAGGGC  67 183
        metK 4306120 .. 4306139 +   -15  -5.75342   CATCAACATGAAAAA            CGGCGAGC CAAG GCTCGCCG             TTTTTTTTGAGCGGA 100 48
        thpR 4318637 .. 4318650 +  -2.3  -3.31232   TGGCCGCTGGCCAAA               CAGGC ATCC GCATG                ATTTTCTCTCCACCG  44 11
        sfsA 4319490 .. 4319505 +  -6.1  -3.10343   ATAGCGGCCTGTTTT              TCCCC CGCATT GGGGA               TTCGATAGTGCGTGT  53 160
        dksA 4320055 .. 4320068 +  -5.3  -2.73364   GCGCATCCCGATGAG               CTTAC TCAA GTAAG                TGATTCGGGTAAGCA  48 86
      gluQRS NONE
        pcnB NONE
        folK 4323315 .. 4323332 +  -6.9  -3.14132   TACGATCGAGAGCCC             CAGCCCG CTGC CGGTCTG              TTCCTGCCCCGGCGG  53 130
        panB NONE
        panC NONE
        panD 4327607 .. 4327625 + -13.1  -3.89957   CGCCTGACAATAAAA             CGGGCGC CTTGC GCGCCCG             TTCTTCCTTATTGCA  87 34
         can NONE
HAP49_RS20630 4334538 .. 4334549 +  -5.8  -2.76509   ACTCGTTGAGCCTGC                TGGC CTAC GCCA                 ATTAATTCTTTCCCC  51 9
        speE NONE
        speD 4336369 .. 4336394 + -10.3  -2.81815   CCGCATCTGTGATGG         AAAGGGCGCGG CACG CCGCGCCCTGA          TGCTTAGTACTTCAG  69 29
HAP49_RS20675 4349194 .. 4349213 + -10.6  -5.47218   GCGCAGTAAACAAAA            CGGCCCGC AGAT GCGGGCCA             TTTTTTTGCCTGAAC 100 52
HAP49_RS20695 NONE
HAP49_RS20700 4355703 .. 4355719 +  -4.3  -2.66748   GGGCCAGCCCCATTT              CGGGCAG CAC CTGCGTG              TAGATTTGAATGATG  44 68
HAP49_RS20715 4359114 .. 4359124 +  -2.6  -2.52543   GCGAGAACCTTTAGT                 TAAA CGA TTTA                 TACGTTAAAACAAGT  38 27
        endA 4359933 .. 4359956 + -13.1  -3.73775   AGCCTTTATCTTTCA          TGGCGCCGC CAACCC GCGGCGCCG           TTTCGTCAGGATCAG  85 49
        rsmE 4360687 .. 4360702 +  -4.6  -2.52464   ATTACCGCTCTGCAG              GTTCGC TTCG GCGACC               TGGGTTAAAGGAGAA  44 2
        gshB 4361680 .. 4361699 + -16.4  -3.24924   GAAGTAATGCGCAAT            GCGGGCGG CATA CCGCCCGC             TGTTCTGCATGGCGC 100 34
HAP49_RS20735 NONE
        ruvX 4362872 .. 4362887 +  -3.2  -3.53444   TCAAAGGTTTGCATG              CCGG ACTGCGCG CCGG               TTTGCAACACGCTCG  49 107
HAP49_RS20750 NONE
HAP49_RS20755 NONE
HAP49_RS20760 NONE
HAP49_RS20765 NONE
HAP49_RS20770 NONE
        hemW 4368005 .. 4368022 + -11.3  -5.63374   GACGAGTAAAAAAAA             GCGCTGA ATAA TCAGCGC              TTTTTTTCATGTTCA 100 32
        mutY NONE
HAP49_RS20815 4372976 .. 4372995 +   -10  -3.14146   GCGAATAACGCTGTT            G-GGGCCAG GCG CTGGCCCGC            TTCAATCCTCTTATA  68 33
        mltC 4374132 .. 4374151 +   -15  -5.58074   GCGTGGAAATGAGAA            GGGCCGGT GCGA ACCGGCCC             TTTTTTTACTGCTTG 100 49
HAP49_RS20830 4377109 .. 4377137 + -17.5  -2.93393   CCGGGCACCATATTC        AGAAGAACCCGCC TAT GGCGGGTTCTTCG        CTTTCTGGGATACGG 100 31
HAP49_RS20835 NONE
HAP49_RS20840 NONE
HAP49_RS20845 4379986 .. 4380007 +  -3.7  -3.33696   CGAGCAAGCGCCCTC           T-CCGGGCAG TCT TTGTCCGGCA           TTAATTAAACGAACC  48 228
HAP49_RS20850 NONE
HAP49_RS20855 4383283 .. 4383299 + -10.9  -5.52384   TTGTTGTGTGTCTTT              GCCCTAT TTT ATAGGGC              TTTTTTTGCTAAAAA 100 371
HAP49_RS20860 4384864 .. 4384875 +  -7.2  -2.84586   ATTAGAAGCGGTTGG                GGCG AAAG CGCC                 TAGTTCAGTTTTGAA  56 399
HAP49_RS20865 NONE
HAP49_RS20870 NONE
HAP49_RS20875 4387517 .. 4387546 + -12.9  -5.18726   CAAGCTATCCATTAT       GCTCAGAGTGTGGC AAC GCCCC-CTCTGAGC       TTTTTATTATAAAAA 100 175
HAP49_RS20880 NONE
HAP49_RS20885 NONE
        queF 4390236 .. 4390259 + -15.4  -4.11295   AGTAAGCCTCATCCC          CAATGCTCCC GCCA GGGAGCATTG           TTTCTCTCGCTTTCA 100 36
HAP49_RS20895 NONE
HAP49_RS20900 4393725 .. 4393747 + -16.3  -3.58305   CGCAATAACCCCCGC           CAGGGCCCG CCAAC CGGGCCCTG           TTTCCCGCATTCATT 100 33
HAP49_RS20905 4396341 .. 4396360 +  -4.2  -3.53811   GGCGTCGGCATGGTC            CAGTCGCA GTGC TGCAGCTG             TTTCAGCGAGGTCGC  53 365
HAP49_RS20915 NONE
HAP49_RS20920 NONE
        abgT 4401596 .. 4401632 +  -8.7  -2.57132   TGGGCTAAACGCACC   GCTATCTCGCCCCGCG CCGGTT CGCGGGGC-AGATCCC    CTTCTCCCCAAGCCC  61 33
HAP49_RS20930 4402704 .. 4402729 + -16.1  -3.73042   GTTGATCCCCTGCAT         CCACGGCGCCC CCCT GAGCGCCGTGG          TCTTTTAATCCGCGA 100 36
HAP49_RS20935 4404310 .. 4404339 + -11.3  -5.27335   TCTGACATCGATTCA       CGTCGCTGCGCCG CAAA CTGCGCAGCGGCA        TTTTTATTTAGCAAG 100 36
HAP49_RS20940 NONE
HAP49_RS20945 NONE
HAP49_RS20950 4408228 .. 4408243 + -11.8  -5.68438   CTGAACCAGTAAAAA              GGGCGC CGAA GCGCCC               TTTTTTGTTTCATCA 100 46
        metC 4411300 .. 4411310 +  -2.4  -3.28327   ATGGCGTGCGCTAAG                 GCGG ATT CCGA                 TAATTTTCTTCGTCT  44 27
HAP49_RS20970 4412111 .. 4412126 +  -7.5  -3.28712   CCTCTTCCTGAACCG              GGCGC GCTACA GCGCC               TTCTCGACCAACGCC  61 30
HAP49_RS20980 4414210 .. 4414225 +  -4.6  -2.50816   AGCAGCGGGTTGGCC              TCGCGC AGCC GGGCGA               CTTCATCGCTCGGCG  43 61
        yqhD 4416460 .. 4416473 +  -3.8  -5.16237   GAAGCGGCGCGTTAA               TCGC AAAACG GCGA                TTTTTTGCTAGGCTT  78 26
        dkgA 4417577 .. 4417598 + -13.7   -4.4078   CTGTAACCCCCTCAA           GCCCTCTCC GGCC GGAGGGGGC            TTTTCCTTCCCGCAC 100 35
HAP49_RS21000 4418331 .. 4418350 + -12.2  -5.27335   GCTCAAAAGTAAAAA            GGAGAACC CGGG GGTTCTCC             TTTTTGTTTACGCAC 100 42
HAP49_RS21015 NONE
HAP49_RS21020 4424386 .. 4424420 +  -9.2  -2.72344   GCCCTCTGCCTCACT    GCGCCGCC-GCCGCG TTCTCC TGCGGCAGGTGGCGA     TAGTTGAAGCTCAAC  62 65
HAP49_RS21035 4427781 .. 4427795 +    -7  -3.72893   TTCCGCCATCGGCTG               CGCGCC GTT GACGCG               TTTGATCAGGAACTG  62 223
HAP49_RS21055 4433293 .. 4433306 +  -3.1  -3.05384   TATCGCGAGCATTTG               GCGAA AATT TTTGC                TTAACTGACGCAGAA  44 8
HAP49_RS21060 4433735 .. 4433751 +  -5.8  -3.16564   CCGCCAATTGCGTAT              TGCGGT AATAC ACCGCG              TTGATCGGCTGGCGC  51 108
        hasF 4440964 .. 4440989 + -13.9  -5.81412   GCACGCTGACAAACA         CGGGGTTCGGC CTGC GCCGCGCCCCG          TTTTTTTTGCCTCGA 100 46
        dhaR 4443090 .. 4443100 +  -8.2  -4.25283   CAGCATCGCCTTCTG                 CCCG CTG CGGG                 TTTTGCTCAGGCAAT  79 73
HAP49_RS21125 NONE
HAP49_RS21130 4449546 .. 4449564 + -14.6  -5.63517   CACTGAAGGTAAAAA             CGCCAGTC TCT GACTGGCG             TTTTTTCTTTAGCCC 100 47
HAP49_RS21140 4452222 .. 4452236 +  -8.5  -5.37345   CTAGCCACAAAAAAA               GCCGC TTTAC GCGGC               TTTTTTATCGTTGAA 100 37
HAP49_RS21150 4453616 .. 4453640 + -21.5   -4.0098   ACGAATAATTCCCGC          CAAGGGCGCGC ACC GCGCGCCCTTG          TTCTTTAGATTGCCC 100 33
HAP49_RS21170 4460284 .. 4460299 + -11.8   -4.8622   TTCAGTTTGAGTTTG              GGCGCC TGCG GGCGCC               TTTTTCATTGGCGCC 100 52
HAP49_RS21175 4461630 .. 4461644 + -12.8  -5.46657   TCAGGCATAAAAAAA               CCCCGC AGA GCGGGG               TTTTTTCTTGCCATC 100 31
        plsY 4463733 .. 4463751 +   -16  -4.05788   AGAAGAATAACAGAA             GGGCCGGA TAA TCCGGCCC             TTTGCTTTACACCGC 100 31
        rpsU 4465386 .. 4465413 + -13.4  -3.94823   TAGTTGCATACGAAG        GCCGTGCTTTCC GAAA GGAATGCGCGGC         TTGTTCTCGTTTATA  90 99
        dnaG NONE
        rpoD 4469224 .. 4469239 + -11.8  -5.64274   CACCCAAAACAAAAA              CCCCGG CCTG CCGGGG               TTTTTTTATGCCTCA 100 53
HAP49_RS21225 4470459 .. 4470478 +  -8.6   -5.4833   AAATCATATAAAAAA            GCCACTTT CCTC GAAGTGGC             TTTTTTATTCCGTGC 100 54
     aac(6') 4472271 .. 4472286 +  -3.9  -4.18506   TACCGCAAAACGCTG              GGCTG ATCAGG CGGCC               TTGTTTTGCCGCTGA  61 20
HAP49_RS21245 NONE
HAP49_RS21250 4474313 .. 4474344 +  -2.7  -3.61715   TGGCCTCCGCCGGCG      CCAGCGCGTGCGG GTAGCG CCGCCCGGCCAGG       TTATTGAACAGAATG  49 215
        yfcF 4475671 .. 4475690 + -12.1  -3.35679   CCTGAGGAAAAAAAT            CGGCGGC CACGAC GCCGCCG             TTCTCAATGCCGAGA  80 36
HAP49_RS21280 4481482 .. 4481508 +  -7.9  -4.03234   GCGACACCACCAGCA        TCGCGCCGG-GG AAAT CCGCCAGCGCGG         TTTCTATCGCCAGCG  70 146
HAP49_RS21290 4485496 .. 4485512 + -15.1  -3.95324   TTGTCTACAGCCTGT              GGGGCGC CCG GCGCCCC              TTGTTATTCACGCTC  95 189
HAP49_RS21305 NONE
HAP49_RS21310 4488006 .. 4488016 +  -3.2  -2.91264   GACGCACCTTTCGCT                 GTTC GGC GAGC                 TGTATGCATAGCGAG  42 4
HAP49_RS21315 NONE
HAP49_RS21320 4489992 .. 4490017 + -11.1  -5.61881   GCAGCGTTCACAGAG         CGGCTGGCGTC TTCC GACGTTGGCCG          TTTTTGTTTTTGAAG 100 227
HAP49_RS21325 4491025 .. 4491048 + -10.3     -3.94   AACCATAATCTGTTA          TC-CGGGGCG CTAGT CGCCCCGTGA          TTGTTTGGCAATTCC  82 39
        sstT 4492532 .. 4492549 + -12.7  -5.25803   TTGCTTCATCAAAAA             GGCGCTC CTTC GAGCGCC              TTTTTTGTCAGCCTT 100 48
HAP49_RS21345 4497060 .. 4497105 + -10.2  -3.18849   GCCACGCTGCAACCG GCCCCGGCGCG-CAGCTGATC CCGCC GCCCGGCCGCCGCGCCGGGCC TCTTGCTCCTCTGGC  73 8
        exuR 4497976 .. 4497996 +  -4.6    -2.702   CGAGCCGAAATAGCC            ACGGCGGT CAAAA ACCGTCGG            CTTATGTCAGGTAAT  44 28
HAP49_RS21355 4498669 .. 4498679 +  -2.4  -3.59979   TATCAGCACTCAGGA                 TCGC CGC GCGC                 TTTCAGCTCACGCCC  47 88
HAP49_RS21360 NONE
        mzrA 4499797 .. 4499814 + -11.3  -4.14598   CAATCTGGGATAATA             CCCCTTC ATAT GAAGGGG              TTTCCTTTCATTGCC  91 28
HAP49_RS21370 4500443 .. 4500455 +  -3.3  -3.10052   TTTATCGATGAGAGC                CCCAT CAC ACGGG                ATTTCTTAAGCATAT  44 59
HAP49_RS21375 4500856 .. 4500874 +  -5.9  -2.53164   GTCGGCGTGGTGTTG             GGCGTGC TGCTC GCGCGTC             GTTAATCATGGCTGA  49 2
HAP49_RS21380 NONE
HAP49_RS21385 4501657 .. 4501670 +  -6.7   -4.1552   GGGCTGGGCAACCTG               CTGAC AAGC GTCAG                TTTATTAGCACGCTA  71 115
HAP49_RS21390 4502272 .. 4502295 + -19.6  -3.26405   ATCTAAACTGTCATT          CAGGGCCCGG CATG CCGGGCCCTG           TCGTTTTTCACTCGG 100 40
HAP49_RS21395 4503325 .. 4503348 + -16.8  -2.78384   GCTAAGGCAAAAAAA          TCCCCTTGCC GCCC GGCAAGGGGA           TGTCATCCAACCGAC  91 36
HAP49_RS21405 4505086 .. 4505121 + -20.6  -4.37092   GCCGGCCGAAAAATG    AAAAACCCCGCGCAAC GGGC GTTGCGCGGGGTTTTC     TTTTGTCGAGGGAGT 100 41
HAP49_RS21420 NONE
HAP49_RS21425 NONE
        diaA NONE
        yraP 4510095 .. 4510127 + -21.3  -3.75015   CGTAAAATAATCCGC      CTGGCGGGAGCGGCA CCG TGCCGTTCCCGCCCG      TTTAATCCAGCTTGT 100 31
        gltB NONE
HAP49_RS21465 4521718 .. 4521746 + -23.3  -4.25104   AACCTTCCGTACCGC        CAAAGGCCCGGCA CAT TGCCGGGCCTTTG        TTTTAATCGGCCACG 100 40
HAP49_RS21470 4522366 .. 4522394 + -14.7  -4.81212   GCTTCTGCCGGGCAA        AAAAAAGCACCCC CAT GGGGTGCTTTTTC        TTTTGTTCTCATGGG 100 44
HAP49_RS21500 4526759 .. 4526778 + -16.4  -3.78351   GATATTCCTTCTTCG            CCCGCGGG GCCT CCCGCGGG             TTTAATCCCGTTTGT 100 39
        degQ 4528309 .. 4528335 + -12.2  -3.11192   TAATTTGTGCAAAAA         CCGGGCTCGGTG ACA TACTGCGCCCGG         TTAACTCATGCTATC  77 38
        degS 4529448 .. 4529470 + -13.4  -3.95424   ACAGCAATTAAAAAA           GGGCCGGC ATTGATA GCCGGCCC           TTTGCTATTCATCCT  90 30
HAP49_RS21550 NONE
        kdsD 4536590 .. 4536605 +  -2.4  -3.90588   CATATGCATGACATG              CTGCGC GCCG GCGTCG               TTTAATTAAGGAATA  53 5
        kdsC NONE
        lptC NONE
        lptA NONE
        lptB NONE
        rpoN NONE
         hpf 4540903 .. 4540932 + -14.9  -4.18494   AAAACCGACGAAAAA       CCGCCTTGCCGGG TTCG CCCGGCGGCGCGG        TTTTAAGTGAAGATG 100 134
        ptsN 4541412 .. 4541424 +  -2.6  -2.52464   ATCATCACCGAGTGA                TGCC CGGCC GGCG                TGACTTCCAGCCCGG  38 26
        rapZ NONE
         npr 4542679 .. 4542699 + -13.3  -3.13522   CGCTGAGACTCTCCC            CATGCGTCG CCT CGGCGCATG            TGTTCCTCCGCCCCT  81 42
HAP49_RS21605 NONE
HAP49_RS21610 4543733 .. 4543749 +  -7.2  -2.73542   GCTGTCGAAGCTGTC              GCTGCC CAGCA GGCGGC              TCATTGAACGTTCAC  52 83
         rnk 4553350 .. 4553368 + -13.1  -4.12532   GTTAAGCGGTTTTCA             GGGCGGC ATCCG GCCGCCC             TTTCTGTCTCAGAGG 100 36
HAP49_RS21685 4557820 .. 4557834 +  -2.8  -4.67635   GGGTAGCGGCGGAGT               CGGT ATTCAGC ACCG               TTTTGTAGTTTTCCG  73 290
HAP49_RS21700 4560167 .. 4560193 + -10.9  -2.63631   AAGCGCCGCCGCCAT         CCCGGGATGAA CCCGT TTCATCCCCGG         TGATGTGCCGGTTCG  68 39
        aaeR 4565688 .. 4565713 +  -3.9  -3.55444   AGCAGCACAGGAAAA         TAGCTCGCCAG CCCG CTGCCCAGCTG          TTTCAGCCATGGCAG  53 137
HAP49_RS21745 4567345 .. 4567379 + -12.3  -3.21276   TAAGCGAATGAGAGA    CGAGATTAACGCGCTT TTAT AGGCGCGTTAGTC-CG     TATTCTGCCGCGGCA  79 38
HAP49_RS21750 4570146 .. 4570163 +  -4.1   -3.5764   TCTTCAACGCCTGCT             CCATGCA TATT TGCATCG              TTTCACGCTGCGGTT  53 465
HAP49_RS21895 4600737 .. 4600750 +  -3.7  -3.32294   CTCCCCTCGGCGACG               GGGGG AGTT CCCGC                TTCTGCGAAATTTCA  48 45
        msrP NONE
        msrQ 4602455 .. 4602496 +  -7.8  -3.50853   CTGCGCTACAAGAAA TTCCGCGCCTGGTGGCGC TGAATC GCGCGGCGGCGCGCGGGA  TTGTCGTTGAAAAAC  64 5
        aroQ NONE
        accB NONE
        accC 4605106 .. 4605124 + -11.7  -5.54907   CATCGTCTGACGAAA             GGCCGGT TAATC ACCGGCC             TTTTTCTTTTCTCGC 100 54
HAP49_RS21925 NONE
HAP49_RS21930 NONE
HAP49_RS21935 4609769 .. 4609779 +  -5.4  -2.52464   GAAAGTTTGGAAAAG                 GTGT AAT ACAC                 TCGGTTCAACAGACG  47 20
HAP49_RS21940 4611050 .. 4611082 +  -6.3  -4.01853   AACCCGCTAATTAAC     GCCGCCCTTGTTTA AACGTA TTAACG-GGGCGGC      TTTATCGTGATATTA  66 48
HAP49_RS21945 4611409 .. 4611425 +  -6.6  -3.10244   CATCGCCCCGTTGCG              TTCACC GGAAA GGTGAA              TAATTTATTAGCCAA  56 134
HAP49_RS21950 NONE
        panF NONE
        prmA 4614115 .. 4614137 + -14.9  -5.93809   TATATTGCTCCCTCA           TCCACCGGC CCCGC GCCGGTGGA           TTTTTTTTGTCCGGC 100 50
        dusB NONE
         fis 4615792 .. 4615818 +  -7.4  -5.69262   TTAACGTGTTGAAAA        GGCGCTTTATC TCATTT GATAA-GCGCC         TTTTTCTTTTTCTGA 100 51
        lpxO 4617735 .. 4617767 + -12.2  -3.19602   CCAATCGTCAATCCA     GAGGCAATGCGAATG AGAA TATTCGCAT-GCCTC      TCTTCCTCTGAACCC  79 48
        lpxP 4618946 .. 4618963 + -14.1  -5.24129   GAGCCCCATTTTCCA             GCCCGGC CGAC GCCGGGC              TTTTTTGTGCGCCGC 100 39
HAP49_RS21995 4619768 .. 4619797 +   -10  -4.07647   TCCCCGTAGGATCGA       GCCGCAGCGAGA CAGGGT TCTCGTTGCGTC        TTTCATTTCGGGTAT  80 50
HAP49_RS22000 4624390 .. 4624422 + -14.8  -2.71731   CCTTCCTTGACGCTC      TACGGTCTGCGGCG CAGTT CGCCGCAGACCGCC      TCCTTACCACATCAG  84 31
HAP49_RS22015 4626877 .. 4626890 +  -3.1  -4.70169   TGACCTCTTTCAACA               CCTGCG GAT CG-AGG               TTTTCTTCGGTATCG  73 345
HAP49_RS22045 4632225 .. 4632238 +  -9.5  -4.67635   CGACGGAAGAAAGAA               GCCCC GCAA GGGGC                TTTTCTCGTTTTAGC 100 57
HAP49_RS22055 4634052 .. 4634065 +  -9.5  -5.64006   GGCGTAGCGCTCAAA               GCCCC GCAA GGGGC                TTTTTTTCATTAGCT 100 34
HAP49_RS22060 4634501 .. 4634522 + -13.1  -3.34344   TAATGCGTTTAGCGA           TAACGCCGT GCAT ACGGCGTTA            TTCATTGCCGCATGA  82 38
HAP49_RS22065 4635711 .. 4635726 + -11.8  -5.76949   AACGAACACAAAAAA              CCCCGC CTGA GCGGGG               TTTTTTTTAGCGCTG 100 72
        uvrA 4639388 .. 4639435 + -11.9  -3.53811   CTGTTGAACCAGTAA TGTCGCCGGCGTGCGGGCCGTC GTTCA GGCGGTCCGCACGCT-GCCCCG TTTCCCCGCAATCGA  82 26
HAP49_RS22080 4640676 .. 4640695 + -16.4  -5.64274   CGCGCCTGATGACGG            CGGGCGCC CGGC GGCGCCCG             TTTTTTTATAGCTGC 100 32
HAP49_RS22110 4645101 .. 4645118 +  -7.7   -3.2327   CCGATGTATTCCATC             GC-CACGC GCT GCGTGAGC             TTGGTGATCAGTTCA  61 92
HAP49_RS22125 4648768 .. 4648785 + -12.7  -4.24075   AGCAGCCAAAGAAAA             GGGCTCC TTGC GGAGCCC              TTTCTGTTACTGCGT 100 42
HAP49_RS22140 NONE
HAP49_RS22145 4652187 .. 4652201 +  -7.1  -4.91109   CAGTTGCCGAACAGC               TCGCC GAGCA GGCGA               TTTTTCTCGTCCGCC  83 477
         zur 4653168 .. 4653196 +  -6.6  -3.02263   GCCGGCCTGCGCTGT       TGC-CGGCCGCCG TCAG TGGCGGCCCTGCG        TGTTACCAGCGGTGT  54 97
        plsB 4658883 .. 4658900 + -12.7   -5.4505   CGCGGAAACACAAAA             GGCACCC CTTG GGGTGCC              TTTTTTCTTGCGGCA 100 51
HAP49_RS22195 NONE
HAP49_RS22200 4663121 .. 4663133 +  -3.3  -4.56775   CATCCGCCACTCGTG                CGGCT GTT AGCGG                TTTTTCAGGACACCT  64 16
HAP49_RS22205 4664350 .. 4664362 +  -6.9  -3.86897   CGGTATCGTTGAGCA                TCGGC TCC GCCGG                TTTCTCCGGCGTCGG  65 239
        malE 4670151 .. 4670174 + -11.6  -2.60075   CAAGTAACGACGTCG          TGCGGGGTGC CGTG GCGCCCCGCC           ATTGCTTCACAGAAA  70 34
        malF NONE
        malG 4672860 .. 4672878 +   -16   -4.9792   TATATCCTGTGTCTT             TGGCGGCC TTT GGCCGCCA             TTTTTATCTCAGCTA 100 206
HAP49_RS22250 4674981 .. 4674994 +  -9.5   -5.5074   GCAGACGTAAAAAAA               CCCGC CGCG GCGGG                TTTTTTATTGGCTTC 100 47
HAP49_RS22260 4678849 .. 4678864 +  -6.2  -2.63596   GACGCCGAGGTAGGG              TAATGG CCGG CCATTA               TCGTATCGACTACAG  50 169
        lysC NONE
        panS 4681500 .. 4681521 + -14.5  -4.93877   AATAAACCGCCTGTA           GGGACGCAA ACAA TTGCGTCCC            TTTTCTTTCCTGCGA 100 36
HAP49_RS22275 NONE
HAP49_RS22280 4688442 .. 4688463 + -18.7  -5.41143   GCCTCCCCTACGCAA           CGCCCCCGG TTTT CCGGGGGCG            TTTTTTTACAGCGTG 100 44
HAP49_RS22315 4696017 .. 4696032 +  -2.4   -4.7173   GATTGACGTCCAGCA              GCTGCC AAAT GGTCGC               TTTTTCGGTGTGCTC  72 288
        iclR 4700583 .. 4700600 +  -5.5  -3.53012   GTTGTCAGCATGTAA             CAGGCTG TCGG CATCCTG              TTTAGCGCACAGGAA  56 93
        gntK NONE
        gntU NONE
HAP49_RS22340 NONE
HAP49_RS22345 4705258 .. 4705308 + -14.7  -3.65046   GGCCTGATTTACATC GCAGCGGTGGCGGCCGGCAGCGCCG CCC CGCTGC-GCTGGCTGA-ACCGCTGC TTCTTGCGATAAGCA  91 34
HAP49_RS22400 4718271 .. 4718281 +  -8.2  -3.21218   GCCCAGGCCAGAAAT                 GGCG TAA CGCC                 TTGCTGATAGAACAT  58 221
         def NONE
         fmt 4723273 .. 4723298 +  -8.9  -4.46587   CTGTAAGTCACCCCA         CTGCCCGGC CGTTCATC GCCGGGCCG          TTATTTTCTTAATGC  86 35
        rsmB 4724628 .. 4724654 +  -9.5  -3.43773   GATTAAAATGTAATG        CTTCAGGGCGTG CGTG CGCGCCCT-AAG         TCTTTCAGTGTGAAG  72 28
        trkA 4726046 .. 4726063 +  -2.1  -4.16016   TTCCAACCGAGCCCG             TTC-TTCT TGT AGAACGAA             TTTATTAGGCGATGG  57 14
        mscL 4726639 .. 4726656 +  -8.4  -5.15634   TTACGCCAATAAAAA             GCCACC AATGAA GGTGGC              TTTTTTAATGCCCTA  93 53
HAP49_RS22665 4751275 .. 4751318 + -10.2  -3.07816   CATCAAGCCAGGCAG CGCCCCGTTGATAGGCCGCGG TCG CCGCCGTC-ATCGACAGCGCG TTGAATACATCCAGC  62 349
HAP49_RS22705 4760222 .. 4760250 +  -9.6  -3.30124   GCTGCGGCAGATAAT       CCGCGTTGGCGTA GTGC TGCGTCA-CGCGG        TTATCCCAGATCGCC  63 100
HAP49_RS22740 NONE
HAP49_RS22745 NONE
HAP49_RS22750 4767464 .. 4767493 + -11.3  -2.52795   AAGATCGAATAAATG       CGTTGAGCGCGGC GCCG GCCGCGCTCCGCC        TCGATTACGCCGGTT  70 29
         crp 4768933 .. 4768949 + -13.7  -5.74122   TAATCCCCGAAGAAA              CGGCGCA GTC TGCGCCG              TTTTTTTATCTGCTC 100 38
HAP49_RS22765 4771049 .. 4771070 + -12.9  -2.76696   ACTGCGCGATCAATA           AGGGCGCGG CATG CCGCGCCCC            GTTATTCGCCGCACG  77 25
HAP49_RS22785 NONE
HAP49_RS22790 4775741 .. 4775787 +  -9.4  -3.13403   GGCGCTCTCATCCAG CGCCGTCACGTCTTGCGGC-GC ACTGC GCTGCCGCA-GGCGTTGCAGCG TCTTGCTCAACCGCG  61 374
HAP49_RS22810 NONE
HAP49_RS22815 4780546 .. 4780567 + -10.1  -5.42259   GCGCGCGGTATGACA           GGGGTTCGG CGCG CCGAACCCA            TTTTTTTAGCCGTAA 100 47
HAP49_RS22820 4781712 .. 4781722 +  -2.4  -3.30159   GCGTTTGCCAGGAAA                 AGCC AGC GGCC                 TTATGCCAGCGTTAA  44 160
        tsgA 4782977 .. 4782995 + -13.1  -5.43866   CATCAAATACATCAA             GGGCGCC CGCAA GGCGCCC             TTTTTTTGCGCCTTA 100 49
HAP49_RS22835 NONE
        nirD NONE
        nirC 4788257 .. 4788269 +  -3.4  -3.04398   GAAAGCCGCCGCACG                TCAG ACCGC CTGA                GTTTTCGGGGGCGCC  44 13
        cobA 4789740 .. 4789754 + -12.8  -5.63517   ACCGACGTAAAAAAA               GCGGCC TAA GGCCGC               TTTTTTATTTGCGCC 100 42
        mrcA 4802489 .. 4802508 + -13.6   -5.7946   TGTTCTGATCGAAAA            GGGCCAGA GAAA TCTGGCCC             TTTTTTTATTCGGCG 100 33
HAP49_RS22925 4805726 .. 4805761 +  -2.5  -4.98255   GCTAACGCTATTATT    CTC-ATCTGCGGACCG CCCGT CGGTTCGCCCGTGGAG    TTTTTATGGTTCCCG  70 83
        yrfG NONE
        hslR NONE
        hslO 4807768 .. 4807802 + -12.6  -3.65084   TAAGTTACACCCTTT     CGGCGGGCGCGCCCGG CGC CCGCCAACGCCCGCCG     TTTGCACGTTTGCTT  83 38
        pckA 4809596 .. 4809612 + -15.1  -6.23317   TACCTCTTCAGCTAA              GGCGCGG ATC CCGCGCC              TTTTTTTATTTTTAT 100 52
HAP49_RS22950 NONE
HAP49_RS22955 4810482 .. 4810498 +  -6.5  -3.19851   GTCAGGCGTTTTCCC              TGGCCGT TTG ATGGCCG              TTGGTCGACTCTTTT  58 72
        greB 4814848 .. 4814876 + -10.2  -3.05597   GTTCTCCATGCCGCG       GCC-GCGCGGCGG CGGC CCGCTTCGCTGGC        ATTTTCCCCGATCAA  71 86
HAP49_RS22985 4817292 .. 4817311 +   -15  -3.53012   AAGTCGGAACCGACA            GGGCGGAG CCTG CTCCGCCC             TTTCCGAGAAAGAAA  91 39
        feoA 4818135 .. 4818152 +  -5.5  -2.69964   CCTCCATTTGCCGAC             GCGCC CTTGCGCC GGCGC              TGCTCTCCTTGAAGA  47 50
        feoB NONE
HAP49_RS23000 4820731 .. 4820780 +  -8.8  -4.22749   TTCTACCGACTGAAA GCC-TGAA-GATAA-GGGGCGCC AATGACG GGCGCCCCATTACCGTTCAAGGC TTATTGTTTGTCTTT  79 20
        gntX 4822819 .. 4822847 +  -5.9  -3.21593   ATATGGTGCGTTTGC        CGCACGTTGTAGT GCC ACGGCAATGGGCG        TATTATAACCGACTA  55 14
        nfuA 4823493 .. 4823530 + -17.9  -4.07568   CGCCACGGTAGATAA   C-ACAATGCCGGAAGGGG GAA CCCGTTCCGGCATTGTCG   TTTTCAGCCCACCGA 100 54
        malT NONE
        glpE 4831669 .. 4831684 +  -2.4  -4.58395   TCCCCTTGGTTTTTG              TGCGCG TTTT CGCGGG               TTTTTCGCAGATCCG  62 71
        glpG 4832636 .. 4832667 +    -5  -4.12198   ACGAACAATAACAGC      CGGGAGCTATGCCC CAAT GGGCATAGTGGGCG       TTTTAGGGGATTATC  63 30
HAP49_RS23050 4833457 .. 4833476 + -12.1    -3.794   TCCGGCCTTAACCTG            CGGGGCG CGCCGC CGCCCCG             TTTCATCCCTTCAGA  85 41
        glpD 4835212 .. 4835239 +  -9.8  -5.24989   AGCTGCAGCGTAACG        AAAAAGGGCCGG TTAT CCGGCCCTTTGC         TTTTTTCCTCTCTCG 100 40
HAP49_RS23090 4847464 .. 4847489 +  -3.9  -4.63218   ATGCAGGTTGAGATT         GCCGTCGCG CAGGCGAT CGCGATAGC          TTTTCTTCAGCGCCG  72 287
HAP49_RS23115 4852393 .. 4852404 +  -3.6  -2.66316   CGCTCCGGGCAGCCG                CGCG GCGA TGCG                 TGATCTCATCCCCCC  43 11
HAP49_RS23120 4854064 .. 4854088 +    -5  -3.85817   TGCCGGTGCCCATGT         GGTGGTGCAGG CACA CCTGCA-TGCC          TTTATCGGCGGCGAT  60 511
        iolC 4861007 .. 4861039 +   -10   -5.4477   AACAGCAGGTTCACG      TCCCCTTAAGGC CATTTCGCC GCTTTAAGGGGA      TTTTTTTGCCCCTTT 100 45
HAP49_RS23150 4862151 .. 4862174 +  -3.8  -3.12327   ATCTCCACCGTTTGG          CCGTCGTAGTC ATA GATGACG-CGG          TATTCGCTGTCGGGA  47 149
HAP49_RS23175 NONE
HAP49_RS23180 4868144 .. 4868161 + -12.7  -4.74801   GCAAGGGTAAAAAAA             CGGCCTC CGCG GAGGCCG              TTTTTCATGGCGTTA 100 31
HAP49_RS23210 4872964 .. 4872991 +  -7.6  -4.20516   TACCTGTAATACCCC        ACAGGGGATGTC TCAG GGCATCCCCCGC         TTTATTGCATGCCGA  74 32
HAP49_RS23215 4873631 .. 4873652 +  -5.1  -3.01791   CACAGCATTACGTAT           TCAGGTCGT ACGG ATGACCTGC            TATTGGGCGCGGACT  49 56
HAP49_RS23220 NONE
HAP49_RS23225 NONE
HAP49_RS23230 NONE
HAP49_RS23235 NONE
HAP49_RS23240 4879203 .. 4879230 +  -6.2  -4.07568   CAATCGCCGGCAATG        GGCCGTCACCG TTCGCTC CGGCG-CGGCC        TTTTAAGGAGGCACC  66 83
HAP49_RS23245 4879851 .. 4879866 +  -3.2  -3.05384   ATAAGGTGCTGCTGA              ATCAGC GCGG GCTGAG               TTGACTGACAACGGA  44 6
HAP49_RS23250 4881483 .. 4881516 +  -3.7  -3.72576   ACGCAAACCACCACG     CCGGCCATCACGGCGA TCA TCATCG-GCTGGACGG     TTTCCTGCAGCAGCC  56 65
HAP49_RS23260 NONE
HAP49_RS23265 NONE
HAP49_RS23270 4889171 .. 4889196 +  -7.5  -3.28924   GCATCCAGGGCAGCT         CGCGCAGCA CCACGCCT TGCGGCGCG          TTATGCCGCAGGCTG  58 175
HAP49_RS23280 NONE
HAP49_RS23290 4892432 .. 4892457 + -13.3  -5.72207   CACTCCTCACGCTTA         CGGCCGATGGT GAAA ACCATCGGCCA          TTTTTTTGCTTTAGC 100 49
HAP49_RS23295 4892998 .. 4893010 +  -3.4  -4.91473   GCCGTTGGCGATCCG                TCAC CCGCA GTGA                TTTGTTTTTAAATTG  75 69
HAP49_RS23305 NONE
         add 4895813 .. 4895830 +    -2  -3.28712   CAGGCCCAGGCCGAG             C-TCCAG GCCCA CTGGAAG             TTGTAACCGCCCAGC  45 100
        pitA 4898790 .. 4898807 + -14.1  -5.81412   AAGCATCATGAGGAA             GGCGGCC GCAG GGCCGCC              TTTTTTTTGCCTGCA 100 46
HAP49_RS23330 NONE
HAP49_RS23335 4901466 .. 4901480 +  -2.8  -4.56597   AGACCGTTAAAACCC               GCATAA CCC TTAGGC               TTTTTCGCCGCGCGG  64 93
        uspA 4902132 .. 4902150 + -13.8  -4.72272   AACTTAACTGACCAA             CGCCCGCG CCC TGCGGGCG             TTTTTCATGCCGCCA 100 55
        gdhA 4903692 .. 4903711 + -10.7  -5.42259   GATTAAATGCTTCAA            TGCCGGC CTCTGC GCCGGCA             TTTTTTTCCGCGTCC 100 72
HAP49_RS23350 4904951 .. 4904961 +  -3.2    -4.652   ACAACGCCCAATCGC                 TCGG ATT CTGA                 TTTTTCGCGTAATTT  66 15
HAP49_RS23355 NONE
HAP49_RS23360 NONE
HAP49_RS23365 NONE
HAP49_RS23370 NONE
HAP49_RS23375 4911063 .. 4911113 +  -2.6  -3.58522   GATCCGCCAGCGCCG TCAGGCTGGAGGCGTGCAGC-AGCGT CAG GCGCTCGC-GCA-GCCACGGGCC-GA TTTCCGCATCCTGAT  49 335
HAP49_RS23400 NONE
        gorA 4917074 .. 4917095 + -13.7  -5.72622   TCCGGCGCGTAACAG           GCCAGGCGC GAAA GCGTCTGGC            TTTTTTATTTATCCC 100 59
HAP49_RS23425 NONE
HAP49_RS23430 NONE
HAP49_RS23435 4923155 .. 4923188 +  -6.7  -4.72272   GATTAAAACAGCGTT     GCAGTGCGGCTTCGAT CAC AT-GGAGCCGCACCGG     TTTTTCATAAGGACC  79 35
HAP49_RS23460 4933326 .. 4933348 + -14.9  -4.44667   AACGCCAAATAAAAA           GGGCCAGAC AAATA GTCTGGCCC           TTTATTATTCACCGC 100 71
        pdeR 4936650 .. 4936660 +  -6.8  -2.62184   GGTAAGCGTCGCCGG                 GCTG GAA CAGC                 TGGTCTACCAGCCCG  48 284
        yhjD 4938649 .. 4938674 + -10.5  -2.90841   GAAGCCATGCGATCG         TGCCGGTGT TATCGCAC ACACCGGCA          ATTTCCTCTGGATAT  70 39
HAP49_RS23485 4940289 .. 4940324 +   -11   -3.3692   ATCAGTCGCTGTGAT    CC-CCTACGGCCCCCTC ACT GCGGGGGCCGCACGCGG    TGTTCGTTTCCTGTC  77 27
HAP49_RS23490 4941133 .. 4941155 +  -4.1  -4.68528   ACGACTGCCGGCTGC          TCACGC-CGC CGCC GCGCGCCTGA           TTATTTTTTGCCTTT  68 3
HAP49_RS23505 4945379 .. 4945389 +  -4.6  -4.03043   GCTAAGCTCGGGTCT                 TGGC ATT GCCG                 TCTTTTTGAATTTAT  61 155
HAP49_RS23510 4946195 .. 4946222 + -12.8  -5.47159   GCCGCCGCAGGCATA        AAAAAGCCGGCA TTGC TGCCGGCTTTTG         TTTTTTATCTTGCGG 100 25
        ilvY 4949251 .. 4949278 +  -3.4  -4.11216   TTATCATGAGAAAAG        CGCGTATCGCG ATGAATG CGCGACA-GCG        TTTTGCCGATCGCCG  61 500
HAP49_RS23575 4960992 .. 4961019 +  -9.8  -3.94184   ATCGCAGTCTGGAAT        GAAAATGGGGCC CGCA GGCCCCATAGTC         TTTAGTCTTCGCTGT  78 24
        hdfR 4962548 .. 4962567 + -12.2   -3.7732   TAGGTAAAAAAAAAA            CCCTTTGC TTTC GCAAAGGG             TTCTTAATATGGCAG  85 267
        trmA 4972601 .. 4972621 + -18.3  -2.94329   ACCGCTGATACGACA            GGGGCGCCA TGA TGGCGCCCC            GTTTCATTACGGCTC 100 33
        sthA 4975748 .. 4975770 +  -4.7  -3.25088   GCGCAGTCCAGTTTG           CCGCTGTCG AGTTG CGCCAGCAG           TTGGTGGGTTTGCGC  48 510
HAP49_RS23660 4977076 .. 4977093 + -14.1  -5.89947   GCCAACGTGAACTTT             GGCGGGC TACG GCCCGCC              TTTTTTTTACCTTTC 100 55
HAP49_RS23665 4978592 .. 4978609 + -14.1  -5.40072   CTCCATTCATACCCA             CCGGGCC TTCA GGCCCGG              TTTTTTTGCGCAGCG 100 50
HAP49_RS23670 4979084 .. 4979102 + -13.1  -3.44051   GGGGTAGAGGTTCAA             GGGCGGC GCCAG GCCGCCC             TTGTCGTCGTCAAGC  82 34
        argE 4985092 .. 4985104 +  -3.5  -2.66733   GCCGATTTTGATGTT                TTTTT GCT AAAAA                TAGTGTCAATTGACG  43 157
         ppc 4987868 .. 4987888 + -11.8  -5.66684   TAGTGAGCCTAATCG            CGGCCCCG TTTAT CGGGGTCG            TTTTTTTATGCCTTC 100 38
        metJ 4993346 .. 4993360 + -12.8   -4.7497   GCAGAAAAGAAAAAA               GGCGCC CAG GGCGCC               TTTTTCATCGGTCGA 100 64
        priA 4996000 .. 4996011 +  -5.8  -2.78679   ATCGACAGCTGATCC                CGGA AAAG TCCG                 ATTTAGCTGCCGCAG  51 29
        cytR NONE
        ftsN 4998363 .. 4998399 + -11.6  -4.02707   CTATACTCTCAATAT   G-CCTCGTAGCGTCTGT GAAA GCAGGCGCTGCGGGGAC    TTCTTTCCGTCTTTA  86 62
        hslV NONE
        hslU 5000336 .. 5000360 + -14.3  -4.06419   TCTTGTCAGTCATCT          GTGTGGGAGGC ATT GCCTCCCACAA          TTATTTCTAACGGAC 100 55
HAP49_RS23755 5001313 .. 5001327 +  -7.2  -3.08032   CCATCGGCGTGGCGC               TCAGTT AAA AACTGA               TGATTTTGCCAACAG  59 18
        rraA 5001899 .. 5001915 + -15.1  -4.45945   TTCGGACATGAAAAA              GGGCGCC TCA GGCGCCC              TTTTCGTTGCTGCAT 100 43
HAP49_RS23770 NONE
        glpK 5005127 .. 5005146 + -12.8  -6.06723   CCGTTTCGCCAACAA            GCGCTGCC TGCG GGCGGCGC             TTTTTTTTTGCCCCG 100 52
        glpX 5006368 .. 5006395 + -12.9  -3.87373   GCTGATAACCACAAA        GGGGAGAAAAA CCCCGC TTTTTCTCCCC         TTTGTCAACGGTATG  87 153
HAP49_RS23790 NONE
         fpr 5009302 .. 5009325 + -14.6  -2.68942   TCAGCGGAACTTCAC          CGGTTCGGCT TCCG GGCCGAACCG           ATTGTCTCCCGGCGT  81 49
HAP49_RS23805 5010561 .. 5010575 + -11.4  -3.60865   TGTTGGGCAGGTAAA               CTGCCG GTC CGGCAG               TTGTCATTTCGACTC  79 96
        tpiA 5011411 .. 5011426 + -11.8   -5.4756   CTTGCCATAAAAAAA              CCCCGG CAAG CCGGGG               TTTTTTATTGCCGTT 100 51
        cpxR NONE
        cpxA NONE
        trmL NONE
HAP49_RS23850 5018962 .. 5018976 +  -7.1  -3.48115   AAAAACCCCGATGAG               GCGCA GATAA TGCGC               TATGTTTTGTAAGGG  60 73
HAP49_RS23855 5019745 .. 5019782 +  -4.1  -3.18681   TGAATGAACCCGCAA   CCACGGCTTAGA-TGCCG TCG CCATACTCGAAGCCGTGG   TTGGTGCCGTTGAAG  48 80
        gpmM 5024780 .. 5024804 +  -4.2  -5.07567   GTTCATCGTGGAATA          ATCCTTCTCC ATGAG GGAGAAGGCG          TTTTTTGCACTATCA  80 25
        envC NONE
HAP49_RS23895 5027086 .. 5027103 + -14.1  -4.09685   GCAAGCATAAAAAAA             GGGCCGG AATT CCGGCCC              TTTTCACGCCTGCCG 100 31
        rfaD 5030544 .. 5030555 +    -3  -2.83119   AGGAATTAACGCTGG                GTAT GAAA ATAC                 TGGTTATCGGCCCTT  41 46
        rfaF NONE
        rfaC NONE
HAP49_RS23925 NONE
HAP49_RS23930 NONE
HAP49_RS23935 5035969 .. 5035992 + -18.2  -2.65766   GCAGGCCGCACTAAT          CGCATCGGCC GGGC GGCCGATGCG           TCGTCTCGCCTTTAG 100 27
        rfaQ NONE
HAP49_RS23955 NONE
HAP49_RS23960 5041596 .. 5041618 + -12.1  -4.81082   CAATAAAAAAATAAA           TAAGGCAGG GGATG CCTGCCTTA           TTTTCTTCGTTAGTT 100 35
        waaA NONE
HAP49_RS23975 NONE
        coaD 5045374 .. 5045393 +   -15  -2.57132   GGCGGATTCAATCGG            CGTGCCGC ATGC GCGGCACG             GTTCTCCCGCCCGCC  74 92
       coaBC NONE
         dut 5049583 .. 5049618 +  -5.2   -2.8085   AAGCTATCACATAAG    CCGCACAGAGCCTGCT CTGC AGCGGCCGGTGCGCGG     GTTTCCGTCAGTTAA  48 202
        slmA 5050261 .. 5050278 + -14.1  -4.15703   CTGCAATAACGAAAA             CGCCGGG CATG CCCGGCG              TTGTTATTTATACCC 100 32
HAP49_RS24030 5052752 .. 5052768 + -15.1  -5.28176   TCCGCACGCCATCAA              GCCCGCG CCA CGCGGGC              TTTTTTATGGCTGCA 100 47
HAP49_RS24040 5054734 .. 5054763 + -19.3  -4.07568   CCTGGTGCTGTAATC       CTCACTCCCGGCC AGGC GGCCGGGAGTGCG        TTTTAAAACGCCACG 100 28
HAP49_RS24050 5056186 .. 5056216 +  -8.4  -2.97747   GCCGCGGGCAAAATG      CGAGCTAACGCTGC ACCCG GC-GCGTTAGC-CG      TGTATACTGTGCGGA  60 137
         gmk 5056906 .. 5056921 +    -4  -2.78935   CAAACTATTGGCAGA              CTGAAG GCAG TTTCAG               TATCATGCCCAGTCT  44 22
        rpoZ NONE
        spoT NONE
        trmH NONE
        recG 5062148 .. 5062174 + -10.8  -5.64274   CTACTCCAACGCATA         AAAAAGGGCGCC GAC GGCGCCCTCTTC         TTTTTTTCTGGCTCG 100 25
HAP49_RS24085 5065068 .. 5065083 + -11.8  -5.62045   CCATTGACGTTCAAA              CGGCCG CTTG CGGCCG               TTTTTTATTGTCTAT 100 46
HAP49_RS24090 5066843 .. 5066872 + -13.6   -4.4261   GCTGCCGTAATCTAT      CGCGCGGCCC-GCC GCCA GGCAGGGCCGC-CG       TTTTACTCTTCCAGC 100 31
        glnA 5073664 .. 5073679 +    -9  -5.60993   CGTGGAAACTTTCAG              CCCATC TTCG GATGGG               TTTTTTTCTCCACCG 100 106
        glnL NONE
        glnG 5076315 .. 5076328 +  -3.7  -2.84634   CTCAGGCTTTACAGC               CGGCG CGGG CGCAG                TATGATCGTGTCGCA  44 92
        yshB 5076489 .. 5076506 + -12.7   -5.1861   CTTCAGTTAAAAAAA             CAGCCGC ATCA GCGGCTG              TTTTTTCATCCTCAG 100 31
HAP49_RS24150 5080015 .. 5080036 + -11.6  -5.24129   TGATCGCACGTTTGA           GCCGATGC CTCGCC GCATCGGC            TTTTTTATGCCCGCA 100 45
HAP49_RS24160 5084711 .. 5084727 + -15.1  -4.88228   ATACGGATAAAAAAA              CGCCGGC GAT GCCGGCG              TTTTTCATGTTGAAT 100 31
        mobA NONE
        mobB 5087999 .. 5088015 + -13.7   -5.2696   TCGAGTGGTTGAAAG              GCGCAGC GTA GCTGCGC              TTTTTTACGTTTTAC 100 15
         rrf 5088217 .. 5088268 - -17.6  -3.52906   CAGAACGCCAGATAA CAGACAAAACAAAAAGCCCCATGC TTTC GCATGAGGCTTGTTGTTTTATTTG ATGCCTGGCAGTGTC 100 28
HAP49_RS24175 5086444 .. 5086462 -  -5.2  -3.25304   AAATAGTAGCATTAA             TGGCGCAT TTC ACGCGCTA             TGCTTTCTCGCACCG  53 49
HAP49_RS24170 NONE
        dsbA 5084711 .. 5084727 - -15.1  -5.65177   ATACGGATAAAAAAA              CGCCGGC GAT GCCGGCG              TTTTTCATGTTGAAT 100 46
        polA 5080239 .. 5080264 - -19.1  -5.55769   TTTTACAATAAAAAA         CGCCCCAGTCA ATAC TGACTGGGGCG          GCTAAATATTCAGCC 100 274
        yihI 5078081 .. 5078096 -  -4.6  -4.56775   ATGGCGCGTTAAAAA              GCATCC TTCG GGTTGC               CGCCTTTCAGCAGCT  68 3
        hemN 5076489 .. 5076506 - -12.7  -5.47218   CTTCAGTTAAAAAAA             CAGCCGC ATCA GCGGCTG              TTTTTTCATCCTCAG 100 37
        typA 5069932 .. 5069958 - -16.6  -5.27399   CAACAGAGGAAAAAA         CTCAGGGCGCGA GAA CCGCGCCCTAAG         CATGAGACACTCAAT 100 47
        yihX 5069166 .. 5069176 -  -3.2  -4.56597   CTTGCGGCGGAAAAA                 CGAC ATG GTCA                 CTCCTTGATGTCCGT  64 72
HAP49_RS24105 NONE
         dtd NONE
        fabY 5066500 .. 5066536 - -11.5  -4.64676   CCACCTTCAACAAAA    TCGACGTGCGGCGCC CTTCGCT GGCGCTGAACGCCGA    CGCCAACCAGATCGC  95 364
        gltS 5062153 .. 5062169 - -15.1  -5.31456   CCAACGCATAAAAAA              GGGCGCC GAC GGCGCCC              TCTTCTTTTTTTCTG 100 51
HAP49_RS24045 5054521 .. 5054541 - -11.1  -2.66329   TGAACTGAAGAAGAT            CGCGGCG GAGCTGT CGCCGCG            CGGGCTGGGCATTTT  62 250
HAP49_RS24035 5052752 .. 5052768 - -15.1  -3.16564   TCCGCACGCCATCAA              GCCCGCG CCA CGCGGGC              TTTTTTATGGCTGCA  89 43
         rph 5050998 .. 5051015 - -11.3  -5.24129   GCCGGGCATAAAAAA             GGCGACT TCTC AGTCGCC              TTGAAAAATCAGTCC 100 34
        pyrE 5050261 .. 5050278 - -14.1  -4.56133   CTGCAATAACGAAAA             CGCCGGG CATG CCCGGCG              TTGTTATTTATACCC 100 33
        radC 5046858 .. 5046872 -  -6.4  -3.76373   TCCCGAACAGCTAAA               GATCCC ACA AGGATC               GCGAAAAAATCGCTT  62 39
        rpmB NONE
        rpmG 5046164 .. 5046193 - -13.7  -4.37886   CTACCCTTTATAAAA       CAAAAAACCCGGC CAAG GCCGGGTTTTTCA        TTAATCCACTAAAAT 100 40
        mutM 5044834 .. 5044872 -  -6.6  -3.80841   ATCATGACCAGCAAA   GCCATCTATCCCGGGACC TTC GATCCCATGACCAACGGC   CACCTGGATTTAGTG  62 464
HAP49_RS23965 5041592 .. 5041622 - -11.3  -5.97979   AGAACAATAAAAAAA       TAAATAAGGCAGG GGATG CCTGCCTTATTTT       CTTCGTTAGTTGAGC 100 31
HAP49_RS23945 NONE
HAP49_RS23940 5035968 .. 5035993 - -14.7  -3.14931   CGCAGGCCGCACTAA         TCGCATCGGCC GGGC GGCCGATGCGT          CGTCTCGCCTTTAGC  89 36
         kbl NONE
         tdh 5027086 .. 5027103 - -14.1  -5.71983   GCAAGCATAAAAAAA             GGGCCGG AATT CCGGCCC              TTTTCACGCCTGCCG 100 44
HAP49_RS23880 5022501 .. 5022513 -  -4.8    -3.695   CTCAAATAGGTTAAA                CGGT TACTT ACCG                CGCACCAGCGGCAGG  56 16
        grxC NONE
        secB NONE
        gpsA 5020598 .. 5020631 - -15.3  -3.53012   CTCTGCCTTGCCAAA     CGGGCCGCTTCACAC GGTA GCGCGAAGCAGCCCA      GGTCATTTGCGGGGT  91 74
        cysE 5019706 .. 5019733 - -13.4  -4.57569   CCACCGCCTGAAAAA        CACAGGGGGAGC CGAA GCTCCCCCTGAA         TGAACCCGCAACCAC 100 44
HAP49_RS23830 5014783 .. 5014801 -   -16  -5.93809   GTCGGATAAAAAAAA             CCCCGCCA TCA TGGCGGGG             AAGACAGGGATGGTG 100 80
        fieF 5013755 .. 5013766 -  -3.6  -4.16251   ATATAACGGTTAAAA                CGCC GCAT GGCA                 CGCTGAGCTAACTCA  61 80
        pfkA 5012583 .. 5012600 - -10.5  -5.31275   GGCGAGCATAAAAAA             GCCCCCG GGAG CGGAGGC              TTTTTTGTCGTGCGG 100 52
HAP49_RS23815 5011411 .. 5011426 - -11.8  -5.60993   CTTGCCATAAAAAAA              CCCCGG CAAG CCGGGG               TTTTTTATTGCCGTT 100 50
HAP49_RS23800 5009061 .. 5009086 -  -3.2  -4.16016   TCAGCCGTGAAGAAA         CACCCGGCTCA CTGAC CG-GCCGCGTG         CCGGCGCTGATCGAG  61 226
        emrD 5006364 .. 5006399 - -17.9  -2.82623   TTCGGCTGATAACCA    CAAAGGGGAGAAAAA CCCCGC TTTTTCTCCCCTTTG     TCAACGGTATGAGGG 100 61
        zapB 5001899 .. 5001915 - -15.1   -4.8048   TTCGGACATGAAAAA              GGGCGCC TCA GGCGCCC              TTTTCGTTGCTGCAT 100 51
        rpmE 4993339 .. 4993366 - -13.6  -4.36914   GCCGGCGGCAGAAAA        GAAAAAAGGCGCC CAG GGCGCCTTTTT-C        ATCGGTCGATAAGAA 100 44
        metB NONE
HAP49_RS23710 4989057 .. 4989079 - -11.9  -4.23781   GGCAGGAAAAGCAAA           GGGGCGCGG TGAAC CCGCGCCCG           CAGAGGATTAAAGCA  95 33
        metF 4987917 .. 4987940 - -13.1  -5.60993   TCCCCCACAAAAAAA          GGGCGCCGC GGTAAA GCGACGCCC           TTTTTCAATGGAACA 100 47
        argC NONE
        argB NONE
HAP49_RS23680 4980513 .. 4980532 -   -15  -3.60475   AATTTTTATGCGAAA            GGGCGCAG CATG CTGCGCCC             TTGCAGAGTCACGCC  91 47
        argH 4978930 .. 4978943 -  -5.2  -3.66178   TGGCGCAAGGCGAAA               CGCC GCCGCA GGCG                CTGGCGGAAAAGAAC  55 194
        oxyR 4974929 .. 4974961 -  -6.4   -3.5627   ACACCATTCCGGAAA     TCAGCTCC-G-TCGGC AAA ACCGAGCAGGAACTGA     CGGCGATGAAGGTGC  59 310
        fabR NONE
HAP49_RS23640 4972601 .. 4972621 - -18.3   -2.8547   ACCGCTGATACGACA            GGGGCGCCA TGA TGGCGCCCC            GTTTCATTACGGCTC 100 32
        btuB NONE
        murI 4968178 .. 4968199 -  -5.1  -2.85069   AATTGTTAAAGAGCA           GTGCCGA-GA AAC TCATCGGCGC           GGGCTGCGTATACTA  48 211
HAP49_RS23620 NONE
HAP49_RS23615 NONE
HAP49_RS23610 4966148 .. 4966185 -  -5.7  -4.49756   TGTTAAAGAGCAAAA   TACTTCGCAGCATACTG TCGC CAATATACTCTGAAGTA    TTGAAATACCGGACT  73 44
HAP49_RS23605 4963074 .. 4963084 -  -6.8  -4.58685   AAATCTCTCTAAAAA                 CACC TTC GGTG                 TTGTAAGGTTAAGCC  76 12
         rrf 4962820 .. 4962832 -  -4.8  -3.05343   TCGATACCGGCAATA                TCGC GCTCT GCGA                CTTGCGCATTACCAG  48 68
HAP49_RS23595 4962668 .. 4962694 - -13.9   -3.0264   AAATCTCGCTTAACA         TTATGCCTGCT AATAA AGCAGGCATAA         TTAAATAAGTGGCGG  80 35
HAP49_RS23590 4962548 .. 4962567 - -12.2  -6.38039   TAGGTAAAAAAAAAA            CCCTTTGC TTTC GCAAAGGG             TTCTTAATATGGCAG 100 35
HAP49_RS23580 4960997 .. 4961014 - -12.7  -4.41047   AGTCTGGAATGAAAA             TGGGGCC CGCA GGCCCCA              TAGTCTTTAGTCTTC 100 32
HAP49_RS23570 4957816 .. 4957827 -  -3.6  -2.82491   TACAGAGGTACCACA                GCCG CGCG CGAC                 ATGACAACACTTTTT  44 94
        ilvL 4957615 .. 4957638 - -13.8   -5.4505   CTTGCCAATAAAAAA          CCCCCGGACC TGAC GGTGCGGGGG           TTCTCTTGCGATTCC 100 51
HAP49_RS23560 NONE
        ilvM NONE
HAP49_RS23550 4954625 .. 4954642 -  -6.2  -2.81312   AATGTATTTATGACA             GGCGGC GAACGA ACCGCC              TGGATATTCTTATCT  51 54
        ilvD 4952732 .. 4952742 -  -2.4  -2.87564   GTAGGGGTTGAGAGA                 CCGC CAT GCTG                 CTTATCCCCCCAGTT  41 27
        ilvA 4951160 .. 4951173 -  -2.4  -2.98368   ATGCAACCCATAAAC               TGAC TAACGC GTCA                CGGTTGCTTATCAAT  41 46
HAP49_RS23535 NONE
HAP49_RS23530 NONE
HAP49_RS23525 4948722 .. 4948748 -  -5.9  -4.82901   CTGCGTCCAGAAAAA        GCGCC--TCAGCG ATC CGCTGATCGACGC        CTTTTGGCGGTTGCT  82 62
        ilvC 4946200 .. 4946217 - -12.7  -5.28176   CGCAGGCATAAAAAA             GCCGGCA TTGC TGCCGGC              TTTTGTTTTTTATCT 100 50
        pdeH 4943218 .. 4943229 -  -5.8  -3.89346   CCCTCAGCGCATAAA                TCGG GCTG CCGA                 ATGAAAGGAAAAGGA  64 83
HAP49_RS23495 4940650 .. 4940676 -  -7.8  -3.65351   TCACCGGTATCGAAA         GCCCGGCGGTGC TGG ACGCCGCCACGC         CGAATTTCTTCGCCC  62 505
HAP49_RS23475 4936271 .. 4936290 -  -2.1  -4.24204   GACCGAGAGCGAAAA            CCACTTC CTCGAC GAAGTCG             GCGTGGACGAAAAAC  59 143
         spy 4933326 .. 4933348 - -14.9  -5.29846   AACGCCAAATAAAAA           GGGCCAGAC AAATA GTCTGGCCC           TTTATTATTCACCGC 100 50
HAP49_RS23455 4931108 .. 4931120 -  -6.3  -3.03635   TAAATTTTGCCAATA                TTCAC TCA GTGAA                TTATGCTGGTTTTTC  53 65
HAP49_RS23450 4927611 .. 4927632 - -12.3  -4.63527   GCAGGATGTGAAAAA           GGAACCGCC CGCA GACGGTTCC            CGTACAAGGATTGAG 100 51
HAP49_RS23445 4924394 .. 4924415 - -17.3  -5.27938   AGCCGCAAATAAAAA           CGGAGCCGG CATG CCGGCTCCG            TTGACCCTTGTAATG 100 51
HAP49_RS23440 4923148 .. 4923158 -  -2.4  -4.49756   CGCTAAAGATTAAAA                 CAGC GTT GCAG                 TGCGGCTTCGATCAC  62 2
HAP49_RS23420 NONE
HAP49_RS23415 NONE
HAP49_RS23410 4917073 .. 4917096 -    -8  -3.01712   TTCCGGCGCGTAACA          GGCCAGGCGC GAAA GCGTCTGGCT           TTTTTATTTATCCCG  60 47
HAP49_RS23395 NONE
HAP49_RS23390 4913669 .. 4913685 -  -5.1  -4.48263   CAGACAACAGGAAAA              TCAATGC CCG GCGTTGA              TCGTTCGTGCCTTAA  71 37
        prlC 4911520 .. 4911531 -  -5.8  -3.79864   TTCACACAATAAACA                CACG CTCA CGTG                 TCGGGTTATCCTTTA  62 31
        rsmJ 4910754 .. 4910773 - -12.1  -2.79239   CGAGAGGAAAACTGA            GGGCCCG ACACGG CGGGCCC             GGCTGACATTACAGC  74 34
        uspB 4898790 .. 4898807 - -14.1   -3.2396   AAGCATCATGAGGAA             GGCGGCC GCAG GGCCGCC              TTTTTTTTGCCTGCA  86 61
HAP49_RS23315 4895359 .. 4895371 -  -3.3  -3.60805   ACAGCGTACGGGAAA                CGCTG GAG CAGCT                ACAGGTGTCGCGCAT  51 421
HAP49_RS23300 4892736 .. 4892749 -  -5.2  -5.00616   GTGTTGGGGAAAAAA               GGCG GCACGG CGCC                CGATCCTCACCGGCA  83 227
HAP49_RS23275 4888974 .. 4889012 - -17.5  -3.24747   CTGGCAGACGAGCAA  CGCGCCGCACTGGCGGCGA TCG TCGCCGCCC-TGCG-CGCG  GTGTCATAGCGGGCG 100 68
HAP49_RS23255 4881121 .. 4881142 -  -5.7  -4.13014   GGCATATCCGCAAAA           TGCGCGGCG TCTA CGCCGAGAA            GCGTCGGGTGCTGAT  67 323
HAP49_RS23205 NONE
HAP49_RS23200 NONE
HAP49_RS23195 4869718 .. 4869742 - -14.3  -2.76225   AACGAAGGGGAAGGA          TTGACGGAGCG AAA CGCCCCGCCAA          ATGATAAATTTAATT  82 86
        fetA NONE
        fetB 4868144 .. 4868161 - -12.7  -5.47399   GCAAGGGTAAAAAAA             CGGCCTC CGCG GAGGCCG              TTTTTCATGGCGTTA 100 38
HAP49_RS23170 4863718 .. 4863744 -   -18  -3.53343   AACTCCCCGTGCAAA         GGCCGCTGCCCC CAT GGAGCAACGGCC         CGCTCATACTCTGCG 100 46
        iolB 4862841 .. 4862856 - -11.8  -4.40003   CCTGATAAAGAGAAA              GCCCGG CAAG CCGGGC               CTCAAGCGCCTATTG  95 35
HAP49_RS23160 NONE
HAP49_RS23155 4862012 .. 4862022 -  -4.6  -3.61398   GCTGGCGCTGAATAA                 CGCC CGG GACG                 AGTAAGGCGGATGTG  54 72
        iolD NONE
HAP49_RS23135 NONE
HAP49_RS23130 4854572 .. 4854582 -  -8.2  -3.85698   GGCCGCCGGTACAAA                 CGCC GCC GGCG                 AGCCGAATCAGATTA  72 38
        iolE 4853597 .. 4853613 -  -9.3  -5.14563   GCCGCCATCAAAAAA              GGGGGCC GGT GGCGCCC              CTCGATCTTTATTGC 100 51
HAP49_RS23110 4850764 .. 4850794 -   -17  -3.15249   CAGACGTGTCATTAA       CCTCAAGGGCTCAC ACC GTGAGCCCTTGAAA       TTTACCGCTTAATCA 100 38
        gntR 4849320 .. 4849371 -   -21  -2.77523   CTTGCAGCAAGATGA CCGCGCACTCGTTGTTACCGGTAT CATG ATACCGGTAACAACATGAGCGCCG GAACCGGGTAACCGG 100 173
        gntT NONE
        gntK 4847196 .. 4847223 - -13.4  -3.25823   GCGGGCTTACATGAA        GCTGTAGGCGCC TGGC GGCGCCGACAAC         GGTCCGCGCTTAGCG  83 35
         asd 4845143 .. 4845157 -  -5.6  -4.71426   TCTTCATTAAGAAAA               CTGCCA GCC TGGCGG               CGTTTGCATGCGGCG  73 181
        glgB NONE
        glgX NONE
        glgC 4839322 .. 4839334 -  -2.6  -4.73677   TGGATAAGAAATAAA                GCAG GCTTG CCGC                TGTTATGTGTGCCGC  65 102
        glgA 4837833 .. 4837843 -  -8.2  -3.66178   CGCGTCAACCCGAAA                 CGCG AAA CGCG                 GGCTACAAGCGTTGA  70 28
        glgP 4835217 .. 4835234 - -14.1  -4.87291   CAGCGTAACGAAAAA             GGGCCGG TTAT CCGGCCC              TTTGCTTTTTTCCTC 100 48
        malP NONE
        malQ 4823493 .. 4823529 - -18.1  -3.50393   CGCCACGGTAGATAA    CACAATGCCGGAAGGGG GAA CCCGTTCCGGCATTGTC    GTTTTCAGCCCACCG 100 30
        bioH 4821117 .. 4821135 -  -2.4  -3.35832   AAAGCCGTCAAAAAT            CCATGCG TAGTAC CGCA-GG             CTGCCGCGACATCCT  46 226
HAP49_RS23005 4820743 .. 4820765 - -13.4    -3.679   AAAGCCTGAAGATAA           GGGGCGCC AATGACG GGCGCCCC           ATTACCGTTCAAGGC  90 41
        cbpA NONE
HAP49_RS22970 4812771 .. 4812799 - -11.6  -2.58579   CCAATTTTGCACAAT        TTCGCCACCGGG AAGCG CCCGGTGGCGTT        CAGCTGTCGGGTCAG  70 37
        ompR NONE
        envZ 4810039 .. 4810073 -  -5.1  -4.54727   CTGGTTAAATGAAAA     GGACAATGACG AGCTCTATCTCAG CGCCATTGTCC     TCGCCGAACTGTTCA  74 420
        nudE 4802489 .. 4802508 - -13.6  -4.18018   TGTTCTGATCGAAAA            GGGCCAGA GAAA TCTGGCCC             TTTTTTTATTCGGCG 100 50
HAP49_RS22910 4798971 .. 4798984 -  -3.8  -2.69799   TGACCTGATACATCA               GCGA TCCTCC TCGC                GCAGCGCCAGGCCAC  43 9
HAP49_RS22905 NONE
HAP49_RS22900 NONE
HAP49_RS22895 NONE
        hofQ 4796161 .. 4796171 -  -2.4  -2.56314   ATAAATCGCAATCCA                 CGCC GCG GGAG                 GGAAACCATATGTTT  39 203
        aroK 4795438 .. 4795472 - -13.6  -3.11182   GGGGAACACAAATCA     GTTTTCCGCATTGGCC GAC GGCGAACGCGGAAAGC     GGCAATCAGTTGCTT  81 31
        aroB 4794141 .. 4794156 -  -3.2  -4.26019   CAACTAGAGGCAAAA              GCCCAC CACC GTAGAC               CTACCGTGGCACGGG  59 140
HAP49_RS22875 4793074 .. 4793085 -  -3.6  -2.87211   ACTCTGTTTCAGACA                GCAC ATCA GCGC                 ACAAATTTAAATGAT  45 41
         dam NONE
         rpe NONE
HAP49_RS22860 NONE
        trpS 4789740 .. 4789754 - -12.8  -5.47821   ACCGACGTAAAAAAA               GCGGCC TAA GGCCGC               TTTTTTATTTGCGCC 100 45
HAP49_RS22830 4782977 .. 4782995 - -13.8  -3.43328   CATCAAATACATCAA             GGGCGCCC GCA AGGCGCCC             TTTTTTTGCGCCTTA  84 38
        ppiA 4777928 .. 4777952 - -15.7  -2.77899   CTTCGGGAGGAAGGA          CGGCCGACCCC GGC GGGATCGGCCA          AAAAATTTACGGCAG  88 32
HAP49_RS22800 NONE
        yehT 4775099 .. 4775116 -  -7.1  -4.72631   ATCAACGCAATAAAA             CACAAAA GGAC TTTTGTG              AAACTGACATGGACG  81 302
HAP49_RS22780 NONE
HAP49_RS22775 4772411 .. 4772423 -  -6.9  -4.35926   AGCGCAAACGCAAAA                CGCCC GAC GAGCG                AAAAAAACGCATCGG  74 43
HAP49_RS22770 4771050 .. 4771069 - -16.4  -3.71848   CTGCGCGATCAATAA            GGGCGCGG CATG CCGCGCCC             CGTTATTCGCCGCAC 100 46
HAP49_RS22755 4767462 .. 4767493 -  -8.7  -4.26003   AGAAGATCGAATAAA     TGCGTTGAGCGCGGC GCCG GCCGCGCTC--CGCC      TCGATTACGCCGGTT  79 30
HAP49_RS22735 NONE
HAP49_RS22730 4763674 .. 4763690 -  -3.1  -4.30995   CGGGCGATAAAAGAA              TAAAAAA GTC TTCTTTA              TTACCCTAGGTAATA  61 51
        tauA NONE
        tauB NONE
        tauC NONE
        tauD 4759878 .. 4759889 -  -7.2  -4.81083   CGCAAGGATCAAAAA                CGCC GCGA GGCG                 GAGTTCCGTACGCAA  86 287
        kefG NONE
        kefB NONE
HAP49_RS22690 4755491 .. 4755501 -  -2.4  -2.85354   GATTGTAACGGAAAT                 CTGC CTC GCTG                 TACCCTCCGGGATAA  39 48
        slyD 4754781 .. 4754799 - -13.8  -5.24129   GCCGCGCATAAAAAA             GGGCAGCC GAT GGCCGCCC             TCTTGTCTCGTGATC 100 50
HAP49_RS22680 NONE
        nhaC NONE
HAP49_RS22670 4750769 .. 4750783 -  -5.6  -3.61715   CAGCGGCTTGAAGAA               CTGGAG AGC CGCCAG               GCCTTCCAAGAGCTC  57 209
        fkpA 4749483 .. 4749507 - -18.6  -4.54727   CGGTCGAAATGAAAA          CCGCCGCGGA GGGCA TCCGCGGCGG          TGGCAAACAGAGCGA 100 46
HAP49_RS22655 NONE
        tusD 4748051 .. 4748067 -    -3  -2.58544   TCCTATCCTCAGAAC             TGC-ACC AGAC GGTCGCA              ACTTAGCGACGCTTC  40 2
        tusC NONE
        tusB 4747315 .. 4747326 -  -2.2  -4.12188   GCACTACTGGCAAAA                TACG AGGA CGCA                 GAATTTTATGGCTGA  55 79
        rpsL NONE
        rpsG 4746240 .. 4746272 - -11.3  -3.07994   TTCAAGTTCAGTTAA     CCCAAGCGGGC-CG ATTTGA CGCGCCCGCTTGGT      TAGCATGACTACAGC  74 48
        fusA 4744036 .. 4744061 - -13.3  -2.78935   ATATTCCTTACTATA         GCGCTCTCCCC TTCT GGAGAGAGCAC          GGGACTTTGGTTTTA  79 51
         tuf 4742789 .. 4742804 - -10.4  -5.63504   AATTGCATAAAAAAA              GGGCAC CGAA GTGCCC               TTTTTTGTGTCGAAA 100 53
         bfd 4742494 .. 4742510 -  -2.2  -4.47118   AAGAGTCAAAAATAA              CCTTAC CCTTT GTTAGG              CAACTTCATGCATTG  62 21
         bfr 4741728 .. 4741756 -  -8.1  -4.09864   ACTGATTCGCTAAAA        TCAGGCTTACCAA GAT TAGGTAAGCCCGC        GCATTATACGCAAAA  74 222
        rpsJ 4741258 .. 4741272 -  -3.5  -2.72379   TCAATCGCTCAATGA               CCTGA TTAAC CCAGG               CTGATCTGCACGTCT  44 16
        rplC NONE
        rplD NONE
        rplW 4739658 .. 4739669 -    -3  -3.12668   TAGGTTTACATTTAA                CAAT TGCC ATTG                 TTCTTACTCCTCCGA  44 42
        rplB NONE
        rpsS NONE
        rplV NONE
        rpsC NONE
        rplP NONE
        rpmC NONE
        rpsQ 4736568 .. 4736594 - -13.9    -5.252   TATGGGTAGAAAAAA         TAAACGGCTCA TTTTC TGAGCCGTTTA         TTAAGTGAGAGCCAG 100 49
        rplN NONE
        rplX NONE
        rplE NONE
        rpsN NONE
        rpsH 4734459 .. 4734469 -  -3.2  -2.60075   TCCTCCCGAATTAAG                 CTAC GTA GCAG                 ATAATCTCGCCACCA  40 10
        rplF NONE
        rplR 4733549 .. 4733559 -  -3.2  -3.28791   ACCTCTTCCTTAGAA                 CTGA AGG CCAG                 CTTCACGGGCAGCAT  46 9
        rpsE NONE
        rpmD NONE
        rplO NONE
        secY NONE
        rpmJ 4730856 .. 4730885 - -12.3  -4.60797   GTGCGACATACAAAA       GATTG-GCTGGCTA ATC TAGCCAGCTCAACC       CAACTTTGCAAGAAA 100 55
        rpsM NONE
        rpsK 4729998 .. 4730014 -  -7.9  -4.24123   CCAACAATCCTAAAA              GCTGCGT TAC ACGCGGC              GCTTTTTCGGCGGAC  74 15
        rpsD 4729350 .. 4729368 - -10.4  -3.14132   TCTCTTTGGTACTAA             GCTTTACT TGG AGTAAAGC             TCGACGATCAGGTGT  71 10
        rpoA NONE
        rplQ 4727874 .. 4727887 -  -9.5  -5.47218   TTGGACGTAAAAAAA               CCGGG CAAG CCCGG                TTTTTTTACGCGTCT 100 46
HAP49_RS22465 NONE
        zntR 4726920 .. 4726956 -  -7.3  -3.36131   AAAACGAGCCGATAA    TACTGCCGGCAATATAA AAA TTAAAGTGCCGTCAGCA    ATCTTTTTTGCCTTT  62 20
HAP49_RS22455 4726639 .. 4726656 -  -8.4  -5.08601   TTACGCCAATAAAAA             GCCACC AATGAA GGTGGC              TTTTTTAATGCCCTA  93 38
        dprA NONE
HAP49_RS22420 NONE
HAP49_RS22415 NONE
        tsaC NONE
        aroE 4717935 .. 4717947 -  -2.6  -3.53012   GTGGCGCCGGGCAAA                CGCC TGGCC AGCG                GCTATCTTTATATGG  47 192
HAP49_RS22395 NONE
HAP49_RS22390 4715230 .. 4715265 - -12.2  -3.45839   ATTGTTAAAGAGCAA    TATCTTAAACATGACT CGGA AGTCATCTTTAAGATA     TGGTGTATCGTCAGA  80 80
HAP49_RS22385 4712158 .. 4712168 -  -6.8  -4.58685   AAATCTCTCTAAAAA                 CACC TTC GGTG                 TTGTAAGGTTAAGCC  76 12
         rrf NONE
HAP49_RS22375 4711854 .. 4711871 -  -8.5  -2.76261   GCCGAACTTCTAAAC             CCACTTT AAAT AAAGTGG              TGCTGATACCCAGAG  59 23
         rrf 4711654 .. 4711705 - -17.6  -4.10459   CAGAACACCAAATAA CAGACAAAACAAAAAGCCCCATGC TTTC GCATGAGGCTTGTTGTTTTATTTG ATGCTTGGCAGTGTC 100 28
        metA 4710357 .. 4710384 -  -8.4  -3.17051   TGCGGAGGATCAACA        GCGCGGCGGCC TCGATTC AGCCGCCG-GC        AGGCAGAAAAGATCA  62 38
        aceB NONE
        aceA 4707026 .. 4707047 - -12.3  -4.82901   CCCCCGCCAGAAAAA           GAAGCCTGC GCAT GCAGGCTCC            GGGTGAAACGTCTTC 100 53
        aceK 4705188 .. 4705233 - -10.3  -3.53811   CGGACGCGCTCGAAA GCGGCGACTACGCGCGC ATCACTGAACTG GCGCGCGCCGCCGTCGC GGGCGCCGAGGCCTG  77 43
        metH 4695762 .. 4695779 - -12.7  -3.60151   CGCTGTAAATGACAA             GGGCGCA TCGC TGCGCCC              TTAAAGAGGAAAGTC  83 39
HAP49_RS22310 NONE
HAP49_RS22305 NONE
HAP49_RS22300 NONE
HAP49_RS22295 NONE
HAP49_RS22290 4690253 .. 4690272 -  -4.8  -2.78384   GGGTCTGGCAGGACA            GCGGGCGG GCGG CAGACCGC             AGAAGAGAAGGGTTA  45 79
HAP49_RS22285 4688442 .. 4688463 - -18.7  -3.05384   GCCTCCCCTACGCAA           CGCCCCCGG TTTT CCGGGGGCG            TTTTTTTACAGCGTG 100 31
         pgi 4674981 .. 4674994 -  -9.5  -5.50499   GCAGACGTAAAAAAA               CCCGC CGCG GCGGG                TTTTTTATTGGCTTC 100 52
        psiE 4672814 .. 4672824 -  -3.2  -3.06915   AGCGAGTGCAGTCAA                 CAAC GCT GTCG                 CTTGAAAGATGACGG  44 92
HAP49_RS22225 NONE
        malK NONE
HAP49_RS22215 NONE
        malM 4664142 .. 4664159 - -12.7  -5.14563   GCGCGGATGAAAAAA             GGTGCGC CAAG GCGCACC              AATCATCGAGCCAGC 100 58
        ubiC NONE
        ubiA 4658883 .. 4658900 - -12.7  -4.78848   CGCGGAAACACAAAA             GGCACCC CTTG GGGTGCC              TTTTTTCTTGCGGCA 100 49
HAP49_RS22175 NONE
        lexA 4655112 .. 4655129 -  -9.8  -5.38958   AGTCAGAAACAAAAA             CGCCCC AAAACA GGGGCG              ATTGATACAGGGAGC 100 60
        dinF 4653660 .. 4653675 -  -3.3  -4.15106   GACCAAGGCTGAAAA              CATGT AAGCAA ACATG               ATCAAATCATAAAAA  59 73
HAP49_RS22160 4653103 .. 4653125 -  -4.2   -3.4382   AAGAAGTAAGACGAA          GTCAGGTAC TTCCCT GTACCTG-C           GGCCGGGGCGCCATA  52 99
HAP49_RS22150 4651595 .. 4651627 -    -4  -3.57561   CGGGAAGCGGCGAAA     GTGC-TGGCGGTGCC AATC GGCACCGTCATGAGC      CGCCTGGCGGCCGCA  53 164
        dusA 4649363 .. 4649387 - -14.3   -3.4486   TGAAAAAACGAGGAA          GGCATCCGGCA GTG CGCCGAATGCC          TGGTGAAAAAGACTA  88 63
        pspG 4648768 .. 4648785 - -12.7   -4.9138   AGCAGCCAAAGAAAA             GGGCTCC TTGC GGAGCCC              TTTCTGTTACTGCGT 100 291
        dnaB NONE
         alr 4645048 .. 4645069 - -17.3  -2.77192   AACGCGTTGAAGAAC           GGGGCCGAC GCGC GTCGGCCCC            TGCGGCGCATCAGTC  95 35
HAP49_RS22105 NONE
HAP49_RS22100 4642256 .. 4642277 - -13.1   -5.4505   GCCGGCAATAAAAAA           GGAGCGATA TCGC TATCGCTCC            CGATCAACGTCCGTT 100 55
HAP49_RS22095 NONE
HAP49_RS22090 4641384 .. 4641402 - -17.4  -5.35365   AAAACAGAAGAAAAA             CGGGCGGC GCC GCCGCCCG             GCAATCAGGCGCGCA 100 30
         maa 4640256 .. 4640276 - -11.1  -3.36823   CCGTCGAAAATCGAA            GACGCCAAG CGC CTCGGCGCC            CATGAAGTGGTGATT  69 450
        ssb1 4635711 .. 4635726 - -11.8  -5.50925   AACGAACACAAAAAA              CCCCGC CTGA GCGGGG               TTTTTTTTAGCGCTG 100 50
HAP49_RS22050 4632225 .. 4632238 -  -9.5  -4.22554   CGACGGAAGAAAGAA               GCCCC GCAA GGGGC                TTTTCTCGTTTTAGC  83 36
HAP49_RS22040 NONE
HAP49_RS22035 NONE
HAP49_RS22030 4630130 .. 4630154 -  -7.1  -4.07568   GCTTCTGCGCGAAAA         GAC-GGGGCG ATCCGG CGCCCCTGCC          GACCTGCTTCACGGC  69 45
HAP49_RS22025 4628441 .. 4628469 - -14.5  -3.03159   GGAATTGCCGTAACA        GGCTCCCCCGCCC GGC GGGCGAGGGAAAC        CCAAGCGGCTTAAAT  86 35
HAP49_RS22020 4626567 .. 4626584 - -14.1  -5.49729   AAGTAGCCAAAAAAA             GGGCCGC ACAG GCGGCCC              TTCAGGATGGGGATA 100 73
HAP49_RS22010 NONE
HAP49_RS22005 4624197 .. 4624215 -  -5.2  -3.12936   ATGCAAATCTGAATA             TCACCGGC CTG GGCGATGA             GCGTGAACTGCTGGC  48 236
HAP49_RS21980 4616182 .. 4616196 - -12.8   -5.4833   GCAGGCAATAAAAAA               GGCCGC AGC GCGGCC               CTTGGGGTAAAGCGG 100 46
HAP49_RS21975 4615792 .. 4615818 -  -7.4  -4.09739   TTAACGTGTTGAAAA        GGCGCTTTATC TCATTT GATAA-GCGCC         TTTTTCTTTTTCTGA  71 48
        csrD 4597473 .. 4597510 -  -4.4    -4.614   GCCAACCAGATAAAA  GCTGACAA-GA-GCCTATC TCA AATAGGCGTCGTTGTC-GC  AGGCAGATTGGAGAA  70 117
        mreB 4596080 .. 4596130 -  -6.1  -4.27117   CCTCGACAACAGAAA GAGGAACCGTACCCGATTCTCGC TGTGC GCATTCATCCGATACGATTCCTC CTTCCAGGGGCTGAC  68 40
        mreC NONE
        mreD NONE
HAP49_RS21870 4593933 .. 4593943 -  -2.4  -3.29263   AGAGCCGGTCGATAA                 TGGC AGC GCCC                 ATCAACCGGTTCTTA  44 27
         rng NONE
HAP49_RS21860 NONE
HAP49_RS21855 NONE
        tldD 4586238 .. 4586250 -  -4.7  -2.87501   CTTGAGGAAAGATTA                CGCCG TGC CGCCG                ACGGTGAGCGTGTCC  47 10
HAP49_RS21845 4584973 .. 4584999 -    -3  -4.67048   GTATTTCAAAATAAA         TTCATCAGCC ATCGGCA GGCTGAAAAA         ATCAATATAAAAAAC  66 346
HAP49_RS21840 4584421 .. 4584449 - -11.2  -3.90048   CCTGTGCTAAAAATA       TTTA-TCGGGCCA TACT TGGCCCGACTAAA        AAGATATTACTGCAG  84 32
HAP49_RS21835 4583306 .. 4583320 -  -7.8  -2.57344   TATCCCTGGCACAAC               GCGCCA AAC TGACGC               CTCTTTTCAAGTCAA  55 37
HAP49_RS21830 NONE
HAP49_RS21825 NONE
HAP49_RS21820 NONE
HAP49_RS21815 NONE
HAP49_RS21810 NONE
HAP49_RS21805 NONE
HAP49_RS21800 4578957 .. 4578969 -  -3.3  -3.61062   AACTCAACGACATAA                CCGGA TTT TCCCG                CTGCTGGCGGTATGA  49 1
HAP49_RS21795 NONE
HAP49_RS21790 NONE
HAP49_RS21785 NONE
HAP49_RS21780 NONE
HAP49_RS21775 NONE
HAP49_RS21770 NONE
HAP49_RS21765 NONE
        fabG 4570997 .. 4571013 -  -2.9  -3.29558   CGACAAGTCATAACA              TTCCTCC GTT GATGGAA              ATGACCTGGCGGGTG  46 1
HAP49_RS21755 4569423 .. 4569449 -  -8.7  -3.02144   CTATGCTGGCCAACA         TCGACAGCATC GAGCA GATGCCGTCGC         CGGCCGCCTGGATCT  57 339
HAP49_RS21740 NONE
HAP49_RS21735 4565360 .. 4565382 -  -6.8  -4.56597   CCGTTGGCTGAAAAA           CGGCGCCGGC ATC GCCTACGCCC           CGCTGATGTGGGTGA  78 210
HAP49_RS21725 NONE
        aaeA 4563191 .. 4563213 -  -3.4  -4.38712   CTCAGCCGGATAAAA           GTTGGGCT GCTCATT AGCCGAAC           TCACGCAGCCGGTGC  61 16
        aaeB 4561140 .. 4561165 -  -8.9  -4.07885   GAGTCTCTCTGAAAA         CAGGCCGCCTC ACAT GAGACGGCTCG          CCATGCCAGGCGCTG  77 97
HAP49_RS21710 4560489 .. 4560505 -    -3  -2.83403   CTTTTGCCATCAAAC              TCACTC CACAC GAATGA              AGTTTTTGTAATGGT  41 9
HAP49_RS21705 4559827 .. 4559842 -  -4.6  -5.30189   CAGAAGATCAAAAAA              GAGGGC CGTC GCCGTC               AGCTGCAGCTGATCG  91 367
        pmbA 4558052 .. 4558079 -   -22  -3.34962   GTTGAGACGGGATAA        CGCGCGGCCGGC GGGC GCCGGCCGCGCA         GCGGATCACTGGCCG 100 31
        cybC 4557145 .. 4557174 -  -8.5  -3.75024   CTGGAGTATGAACAA       CAGGGCCGCGA-CG GCG CGCTGGCGGCGCTG       CTGCTGCACGAGCTG  69 411
HAP49_RS21680 NONE
HAP49_RS21675 NONE
HAP49_RS21670 4553175 .. 4553194 -  -6.4  -3.53444   CCAGCTTCGCTGAAA            GACAGCCA CGAT CAGCTGTC             GGTGATGGCGCCGCT  57 208
HAP49_RS21660 NONE
HAP49_RS21655 NONE
HAP49_RS21650 NONE
HAP49_RS21645 NONE
HAP49_RS21640 NONE
HAP49_RS21635 NONE
HAP49_RS21630 NONE
HAP49_RS21625 4546883 .. 4546902 - -12.8  -3.14468   CCTCAGTATAGGTAA            CGGCGCGG CATG CCGCGCCA             CGGGAAAACCTTCGC  79 72
HAP49_RS21620 4545613 .. 4545644 - -17.2  -2.70932   TGTGTCCGTCAATCA      GGCGGCCCACCCGG CGAA CCGGGCGGGCCACG       GGTTACTTCGCCGGC  95 28
HAP49_RS21615 4543223 .. 4543233 -  -6.8  -3.52073   CGCCGAATACGACAA                 GCTG ATG CAGC                 ACTATCGAAGGAGTT  62 471
        mlaF NONE
        mlaE NONE
        mlaD NONE
        mlaC NONE
        mlaB 4531166 .. 4531184 - -12.4  -5.41941   TAAACTAAAGAAAAA             GCCCCTGC ATA ACAGGGGC             TTTGTATCGTTTTAC 100 66
        ibaG 4530797 .. 4530834 -  -7.7  -3.05384   CTCTCTGTTATCTAA   TCTGAAGCTGCCCGCCC GGCA GGGCAAACAGCCTTAAA    ATCCGTTGAGTTTGC  59 21
        murA 4529448 .. 4529470 - -13.4  -5.31059   ACAGCAATTAAAAAA           GGGCCGGC ATTGATA GCCGGCCC           TTTGCTATTCATCCT 100 70
HAP49_RS21495 4524943 .. 4524974 -    -5  -4.72188   TGAATGGAAAATAAA      TTTATCGCCGGCGG CGGA CAACCGGCGATAGG       CCCGGCGGGCTCAGG  73 36
        rplM NONE
        rpsI 4523831 .. 4523847 - -13.7  -5.42259   TCAGGCGTAAAAAAA              CCCGGTG AAG CACCGGG              TTTTTTGCGTAAATC 100 62
        sspA NONE
        sspB 4522372 .. 4522388 - -13.7  -5.75342   GCCGGGCAAAAAAAA              GCACCCC CAT GGGGTGC              TTTTTCTTTTGTTCT 100 48
HAP49_RS21455 4514145 .. 4514157 -  -6.2  -3.49102   ACAGCGGTGAGATAA                GGCG GCAAA CGCC                GAAGTGTGGCAAAGA  57 48
        arcB NONE
        elbB NONE
        mtgA 4510090 .. 4510132 -  -8.2  -4.22214   ACCTACGTAAAATAA TCCGCCTGGCGGGAGCGGCA CCG TGCCGTTCCCGCCCGTTTAA TCCAGCTTGTTCTCG  76 22
        rsmI NONE
        rnpB 4505091 .. 4505116 - -20.5  -5.18355   CCGAAAAATGAAAAA         CCCCGCGCAAC GGGC GTTGCGCGGGG          TTTTCTTTTGTCGAG 100 37
HAP49_RS21400 4503325 .. 4503348 - -16.8  -5.53288   GCTAAGGCAAAAAAA          TCCCCTTGCC GCCC GGCAAGGGGA           TGTCATCCAACCGAC 100 42
        uxaC 4494068 .. 4494078 -  -4.6  -3.28791   ACCGGTCCCGGATAA                 CGGC TAC GCCA                 GTTCAATGGCGAAAT  50 18
HAP49_RS21335 4492532 .. 4492549 - -12.7  -4.72272   TTGCTTCATCAAAAA             GGCGCTC CTTC GAGCGCC              TTTTTTGTCAGCCTT 100 39
        rlmG 4485337 .. 4485353 - -15.1  -5.02074   TGACGCTGTAAAAAA              GGGGCGC CCG GCGCCCC              TGATATTGATGACAA 100 198
HAP49_RS21285 4480952 .. 4480968 -  -2.1  -4.08767   TGCAGGCGCTGAAAA              CCGCCCA TGC CGAGCTG              TACCGCGGCGGGCAC  57 441
HAP49_RS21275 NONE
HAP49_RS21270 NONE
HAP49_RS21265 4475670 .. 4475691 -  -8.6  -5.52384   GCCTGAGGAAAAAAA           TCGGCGGC CACGAC GCCGCCGT            TCTCAATGCCGAGAA 100 69
HAP49_RS21255 4473666 .. 4473697 -  -2.8  -4.08945   ATGACGCGTGGAAAA      CGCTGCC-TCTGGAC GAA GACCTGTCGGCAACG      TTTTATCACGTGATT  58 465
HAP49_RS21235 4470879 .. 4470893 -  -2.1  -3.65294   GGCTACACAAAGCAA               TAGTG ACAAA CACCA               GTAACAGGAATATTG  50 157
HAP49_RS21230 4470459 .. 4470478 -  -7.9  -5.43487   AAATCATATAAAAAA            GCCACTT TCCTCG AAGTGGC             TTTTTTATTCCGTGC 100 85
         mug NONE
HAP49_RS21215 4469218 .. 4469245 - -12.8  -4.18018   CTGCCGCACCCAAAA        CAAAAACCCCGG CCTG CCGGGGTTTTTT         TATGCCTCAGAACAT 100 32
        tsaD 4463728 .. 4463755 -   -15  -4.06864   CCGAGAGAAGAATAA        CAGAAGGGCCGGA TAA TCCGGCCCTT-TG        CTTTACACCGCAGGC 100 28
        folB 4462532 .. 4462558 -  -7.3  -5.39721   CCATCACATAAAAAA        GCGGCAGTG-CT TAAA AGACAATGCCGC         TAAAACAATTCTCAG 100 89
        bacA 4461630 .. 4461644 - -12.8  -5.64274   TCAGGCATAAAAAAA               CCCCGC AGA GCGGGG               TTTTTTCTTGCCATC 100 45
HAP49_RS21165 NONE
        glnE NONE
        hldE 4453609 .. 4453627 -  -4.4  -3.83155   CAGGAAGACGAATAA             TTCCCGCC AAG GGCGCGCA             CCGCGCGCCCTTGTT  59 58
        ribB 4452222 .. 4452236 -  -8.5  -5.64274   CTAGCCACAAAAAAA               GCCGC TTTAC GCGGC               TTTTTTATCGTTGAA 100 53
        ygiD 4449546 .. 4449564 - -14.6  -4.75174   CACTGAAGGTAAAAA             CGCCAGTC TCT GACTGGCG             TTTTTTCTTTAGCCC 100 34
HAP49_RS21120 4446215 .. 4446236 - -18.7  -2.52464   TTCCTCTGTAAGCCA           GGGGCGCGG TGCA CCGCGCCCC            AACGGTATCAATGAC 100 33
        dhaK NONE
        dhaL NONE
        dhaM 4442852 .. 4442875 -  -5.9  -3.53012   CGTCGCTGCTGGAAA          GCGATCCGC AGCCCG GCGCACCGC           TGTTGACGCTGACGG  55 189
        nudF NONE
HAP49_RS21085 NONE
        cpdA NONE
        yqiA 4436565 .. 4436580 -  -6.8  -2.64155   TCGTGGTTAAAGGGA              GGTGCCG GAA CGGC-CC              GTCAGACCGCGTTTA  52 27
        parE 4434606 .. 4434632 - -17.2  -3.53091   ACGCCCTGCGGGAAA         GCCGGCCCGGCG TTT CGCCGGGCCAGG         GTCAGGCTCAGACCG 100 33
HAP49_RS21065 4433377 .. 4433389 -  -4.7  -3.90943   GAAATCAAAGTGAAA                CCCGG CCA CCGCG                CCACCGTACTGCAAG  60 297
        parC 4430083 .. 4430108 - -14.7  -4.53857   AGCAAAAATAAATAA         GGCGGCCACAG CTCG CTGCGACCGCC          CGTTAACGCCGGCGC 100 47
HAP49_RS21045 4429057 .. 4429094 - -15.7   -4.0896   AAACCGTGTGCAAAA   CCCAAACGCCCGCCAAT CAAG ATTAGCAGGCGTTCAGG    CGTTAACGGCGCTGA 100 80
        ftsP 4427568 .. 4427595 -   -12  -2.71712   GGCCTTCCTGGAAAT        GCTGCGGG-CGCC GTA AGCGGCCCACAGC        GCAGATTACATCGTC  74 31
        xapA NONE
HAP49_RS21025 4424005 .. 4424060 -  -8.9  -3.16742   CTCAACCGCGACGAA GTGGC-CA-CGCTGTGCGGCGCCGGCG ACGC CGTGGAGGCCGCACAGCGCTATGCCGC CGCCCGTAATCTGAC  58 346
HAP49_RS21010 4420575 .. 4420588 -  -8.1  -3.36785   TTACAGGTTAATTAA               TCGCC GGGC GGCGA                TTATACGCACTAGCA  65 64
HAP49_RS21005 4418331 .. 4418350 - -12.2   -5.0925   GCTCAAAAGTAAAAA            GGAGAACC CGGG GGTTCTCC             TTTTTGTTTACGCAC 100 53
HAP49_RS20985 4413641 .. 4413688 -  -2.4  -3.85389   GTGGAACAAGGCAAA CTGCATGCCGGCGATACGGTGC TGGT GCAAGGCACCGGCGGCGTGGCG CTGTTCGCGCTGCAG  54 519
HAP49_RS20975 4412089 .. 4412116 -  -5.5  -5.00884   ATCTGGCGTAAAAAA        CGCG-CCGCCTC TTCCT GAACCGGGCGCG        CTACAGCGCCTTCTC  79 26
        exbB NONE
        exbD 4408228 .. 4408243 - -11.8  -4.81083   CTGAACCAGTAAAAA              GGGCGC CGAA GCGCCC               TTTTTTGTTTCATCA 100 46
HAP49_RS20910 4395525 .. 4395581 -    -3  -4.08144   GCCACCAAGCACAAA GGCATCGAGCTGGC-ACTCAGCTACGAT CTC AGCG-AACTGAATCGCGCGCTCGACGGC GCCAGCGTCTACACC  58 472
        speF 4374132 .. 4374151 -   -15  -3.60151   GCGTGGAAATGAGAA            GGGCCGGT GCGA ACCGGCCC             TTTTTTTACTGCTTG  91 31
        trmB NONE
HAP49_RS20800 4370338 .. 4370361 -  -8.1  -4.75472   CTTAGATCAATAAAA          CG-GCGCGGC GCGAA GCCGCGCTCA          TCGGGCAAGCGCGAT  87 40
        glsB 4369365 .. 4369376 -  -2.2  -5.14965   ACTGGGATTAAAAAA                TCGA ACGA CCGA                 TACGTTGAGACAACA  74 6
HAP49_RS20790 4368562 .. 4368591 -  -7.7  -2.87564   CCAGTTTGTCAGATA       GCCGTCGTGAGGT CAAA AACGCACGGCGGC        TACGCCTATCCGTTA  57 38
HAP49_RS20785 NONE
HAP49_RS20780 4368005 .. 4368022 - -11.3  -5.88471   GACGAGTAAAAAAAA             GCGCTGA ATAA TCAGCGC              TTTTTTTCATGTTCA 100 38
HAP49_RS20745 4362411 .. 4362461 -  -7.5  -4.25283   ACTTTGGCACCAAAA GCATCGGCGCGGCCGTTGGCCAG GAGTTGA CCGGC-AGCGCCCGCGCCC-TGC CGGCTTTCAAAGCGC  76 351
HAP49_RS20710 4356564 .. 4356595 - -23.8  -3.50869   CAGGACTTTACACAA      CCCCCTCCACCGCC CGCG GGCGGTGGAGGGAG       AGAGGCGATTATTTC 100 34
HAP49_RS20705 4355561 .. 4355571 -  -8.2  -5.52384   CGTGCAGCAAAAAAA                 CCGG CTG CCGG                 CCGCCGACGGGATCA 100 38
HAP49_RS20690 NONE
HAP49_RS20685 NONE
HAP49_RS20680 4349194 .. 4349213 - -12.8  -4.93877   GCGCAGTAAACAAAA            CGGCCCGC AGAT GCGGGCCA             TTTTTTTGCCTGAAC 100 46
        pdhR 4346359 .. 4346387 -    -3  -3.17723   GTACCTCGAACTTAA        CCCCCGCAGGCT GGTGT ACCCTGAAGAGG        ACAGCTCTTAATCCT  44 33
        aceE NONE
        aceF 4341635 .. 4341666 -   -10  -2.70215   AAACTGCTACAGAAT      CGTCAGGGGCGCAG CATG CTGCGCCCCTTTTG       CATTACATCACCAGA  65 28
        lpdA 4339965 .. 4339984 - -11.4  -5.86061   TCTGAGCAAAAAAAA            CGGCCCCT TCTC AGGAGCCG             CTTGATGACCGGTCA 100 52
        acnB 4336855 .. 4336874 -   -15  -5.13722   CTGAGCAAAATAAAA            CGGGAGGC CAAG GCCTCCCG             TTAAACAGCTGCGCA 100 51
HAP49_RS20645 4336372 .. 4336391 - -16.4   -3.6502   CATCTGTGATGGAAA            GGGCGCGG CACG CCGCGCCC             TGATGCTTAGTACTT 100 32
        cueO 4332269 .. 4332316 -  -6.1  -2.79796   GCGGAGTTTAGCATA GCCTTTCGC-C-GGTGGCGACGC GAGC GCGCCGCCACATGAGCGCCGGGC CGCGATCAATCGGCG  51 31
         hpt 4331649 .. 4331665 -  -9.3  -3.35774   GATAAAGGCGTATAA              CCCCGCC GCG GGCGCGG              CTTGCCGCGCCCCAC  69 47
HAP49_RS20610 NONE
HAP49_RS20605 4329058 .. 4329082 - -12.8  -5.24551   CCAAATCAAGAAAAA          CGCCCCCGCC GGGAA AGCGAGGGCG          CGATACGATCAGCTG 100 34
HAP49_RS20600 4327607 .. 4327625 - -13.1  -4.77165   CGCCTGACAATAAAA             CGGGCGC CTTGC GCGCCCG             TTCTTCCTTATTGCA 100 33
HAP49_RS20580 NONE
        qseC 4322742 .. 4322764 -  -9.8  -3.14132   CGCGCTGGGCAGCAA           CCTGGCGCAG CCG CTGCAACAGG           TTAACGCCGCGCTGG  64 477
        hrpB NONE
        mrcB 4312839 .. 4312867 -  -5.2  -5.82036   ATAACAAAGAAAAAA       CTTTCACCGGGGC CGAC GCCCCGGT-AGCG        ATTACTGGCCGAACA 100 27
        fhuA 4310381 .. 4310425 -  -4.8  -2.87132   TTTGTCCTGCATAGA TCCTGCTTTGTCCGGGGCGACG CGG CGCCGCCCCGG-CTATCC-GGT TAGAAACGGAAGGTT  47 25
        fhuC NONE
        fhuD NONE
        fhuB 4306634 .. 4306652 - -14.6  -6.20267   TGAAAAATAAAAAAA             GGCTCAGC GAC GCTGAGCC             TTTGATGGCAGAAAA 100 60
HAP49_RS20510 4306120 .. 4306139 -   -15  -4.89233   CATCAACATGAAAAA            CGGCGAGC CAAG GCTCGCCG             TTTTTTTTGAGCGGA 100 108
        speA 4302018 .. 4302044 - -17.2  -5.49579   CGACAAAAAAGAAAA         GGCCGGGCGTCC TTA AGCCGCCCGGCC         TTTCTTCACTTCATT 100 39
HAP49_RS20495 4300671 .. 4300697 - -15.3  -2.70667   GAGAAATTAACGAAT         TACCGGCGAAA GCGTA TTTCGCCGGTA         GATTAACGCCCGGAT  83 47
HAP49_RS20490 NONE
HAP49_RS20485 NONE
HAP49_RS20480 NONE
HAP49_RS20475 NONE
HAP49_RS20470 NONE
HAP49_RS20465 4294338 .. 4294355 -  -2.6  -3.93695   GTTATTATGGATAAA             CCAGGC TAATCT GCGTGG              TCAGGTTGGCGCTGC  53 301
HAP49_RS20460 NONE
HAP49_RS20455 4292955 .. 4292966 -    -3  -3.59995   CCAAAGCGATAAAGA                TAAG GGTG CTTA                 GGCAGATTCTCGGAG  49 185
HAP49_RS20450 4292127 .. 4292160 -   -11  -6.22802   CGTTACAAAAAAAAA     TCCCTCCCGCGTCG TTAGCC CGACGAGAAAGGGA      TTTATTCGATGTGTG 100 327
        speB 4291096 .. 4291119 - -13.2  -6.25578   ATGAAATAAAAAAAA          GCGGC-CCCAT ACG ATGGGAGCCGC          TTTTTCAGCGAGGCG 100 51
HAP49_RS20440 4290620 .. 4290650 - -16.9  -3.16564   TCTGGACGCCACCAA      CCAGCAGACGGGGG ACAT CCCCCGTC-GCCGG       GTTGCCTTACCGTTC 100 32
HAP49_RS20435 4288441 .. 4288454 -  -5.9  -3.63627   GCGCGACAGGTTAAA               CGGGC ATAA ACCCG                TTTCTCTCTCCTCTG  59 216
HAP49_RS20425 NONE
HAP49_RS20420 NONE
HAP49_RS20415 NONE
HAP49_RS20410 NONE
HAP49_RS20405 NONE
HAP49_RS20400 NONE
HAP49_RS20395 4281258 .. 4281274 -  -7.9  -2.54745   CGTAGTCATAAAACG              CTCCCGA GGT TCGGGCG              TTATTTCAACGCCAT  55 26
HAP49_RS20390 NONE
HAP49_RS20385 NONE
HAP49_RS20380 NONE
HAP49_RS20375 4277836 .. 4277853 -    -4  -2.87132   GGCCCCTGCTACACA             TGGCGG TTAAAG CCGCCG              GAAACGTCCAGCGCC  45 1
HAP49_RS20370 NONE
HAP49_RS20365 NONE
HAP49_RS20360 4273807 .. 4273826 - -16.4  -3.50358   AAATAACCACGAGAA            CGCCCGGC AACC GCCGGGCG             TTTTTTTATCGTCTC 100 39
         tkt 4270767 .. 4270785 - -14.6  -5.60993   CCGCCCATAAAAAAA             GCCGGTCA TGA TGACCGGC             TTTTTTATCGGCTTG 100 52
HAP49_RS20330 4266732 .. 4266747 -  -7.5  -5.10461   TTCAGCCAATAAAAA              GCCCG GCAGCG CGGGC               TTTACGGCGCTTCCA  91 49
HAP49_RS20325 4265469 .. 4265499 - -20.4  -3.83102   TAAACGACGACCAAA       GGGCGCGCGCCCGT GCG ACAGGCGCGCGTCC       GAATGCAGTCCCTGT 100 40
HAP49_RS20320 NONE
HAP49_RS20315 4262579 .. 4262596 - -14.1  -4.06055   ACTCTGTAAACGAAA             CGCCCGC ATCG GCGGGCG              TCCTGGTTAGGCTTT 100 32
         epd 4261084 .. 4261097 -  -3.7  -2.71364   GCAGCGCGCCAATCA               CGCCG GCGC CGCCG                TACTAGAAACCGCTG  44 28
         pgk 4259837 .. 4259856 - -10.6  -4.77173   GCGGTATAAAACAAA            CGGGCGGC TTTC GCCTCCCG             TTGTCTGAATTACTG 100 35
        fbaA 4258624 .. 4258641 - -12.7   -5.0925   GCTGAAAACGAAAAA             GGCTCCC CGCA GGGAGCC              TTTTGCATCGTGCAA 100 54
        mscS 4256851 .. 4256866 - -11.8   -5.4505   GCCTGCAATAAAAAA              GGGGGC CAAG GCCCCC               TCTCTGTTATTCCGC 100 32
HAP49_RS20270 4251925 .. 4251951 -  -4.2  -3.61398   GGTGGCCCGCAACAA         GGCCGTCAACGC CGC GCTCTGCCGGCA         GTTCAGCGAACGCAC  53 466
HAP49_RS20205 4238777 .. 4238795 -    -3   -4.5442   CCTCGAATGATAAAA             GGCGCC GGACGTG GGCGCG             TATCGGTTAACACGC  64 109
        argO 4238033 .. 4238049 -  -2.1  -2.90075   GTCTCCTTAATGACA              GGCTGTC TCT GATCGCC              GGCTTTTCCCTGCGA  41 112
HAP49_RS20195 4237245 .. 4237262 - -11.3  -5.48054   ATTAAAACGAAAAAA             GGTTCGC CGCG GCGAACC              TTTTCTTCAATACCA 100 46
        rpiA 4235443 .. 4235467 - -19.3  -2.96329   TTAACCGAAGAATTA          TGCGGCCCGGC ACC GCCGGGCCACA          AACGGCAGAAGCTTA 100 38
        serA 4233906 .. 4233923 - -12.7  -4.55826   GCCAAAATAGCAAAA             GGCCGGA TCGC TCCGGCC              TTTTTCGTTGCGGCA 100 51
HAP49_RS20160 4231749 .. 4231786 -  -3.3  -2.71791   ACCTTCTCCTGAAAT   CATGCCATCCGCACCGCC GGC GGAGGGGC-GATAGAACG   TTTAGTGCAGCGTCG  41 27
        pepP NONE
        ubiH 4229177 .. 4229200 -  -4.4   -3.9122   GATTTCCTTAAATAA          CGC-GCGACGC CTT GCCACGCCGCG          TTTTTGGGCGCGCCA  59 61
        ubiI 4227918 .. 4227940 -   -17  -2.69546   GCATAAAGCGAGAAG           CGCGAGCCCG CTG CGGGCTCGCA           GAAGGCAGGTGTCAG  95 37
        gcvT NONE
        gcvH 4225881 .. 4225905 -   -15  -4.43309   GAACGGTAACTAAAA         CGCCCC-GGCC GAAA GGCCTGGGGCG          TGGGCACGATTACTC 100 35
        gcvP 4222893 .. 4222917 - -20.1  -5.54907   GCGATAAAATAAAAA          GGGACACCGCA TCA TGCGGTGTCCC          CCAAACACAAACTTT 100 51
HAP49_RS20125 4221589 .. 4221603 -  -8.5  -3.12351   GCGCTGGACACCGAA               CCGCG CGGCC CGCGG               CAAGATCTGCGCCAG  58 291
HAP49_RS20105 4218802 .. 4218816 -  -8.6  -2.64616   TTGCCAGTCAGAGTA               TAGAGC GGC GCTCTA               GAAAACGCTTCAGAG  58 35
HAP49_RS20100 4217944 .. 4217984 -  -3.8  -3.82321   TATTTAATCAAAATA  CCTCGCATCCGGAGGGAT GTCAA AACCCTACGGATGCGTTC  AACGCCCGCCTGCGG  57 24
HAP49_RS20095 NONE
HAP49_RS20090 4217260 .. 4217280 - -15.5   -5.9663   AAACAGCAAAAAAAA            TCCGGTGAG AAC CTCACCGGA            TCGTTAGCCGCCTGG 100 47
HAP49_RS20085 NONE
HAP49_RS20080 NONE
HAP49_RS20075 NONE
HAP49_RS20070 NONE
HAP49_RS20065 NONE
HAP49_RS20060 NONE
        alsK NONE
        rbsK 4208946 .. 4208977 - -12.9  -2.60244   GGTTGAAGTAAGGGA      GCCGGGCTGCCGC CTCTGC GCCGCAGCCCGTC       AACGTCAAGCGAACG  76 30
HAP49_RS20040 4207409 .. 4207443 - -16.6  -2.96745   GATACCCGAAAGAAG     CAAGCGCCTCTTTTTT AAA ACAAAAGAGGCGCCTG     TTCAATACGCATTCA  95 57
HAP49_RS20035 4206614 .. 4206650 -  -6.6  -4.08216   GCAGCTGGGGGAAAA   CTGGCGTCG-CACCGGCA CCG TACTGGCGTCGA-GCCAG   TTAGCCGACGGTACG  67 202
        sdhE 4205212 .. 4205229 -  -3.3  -2.64107   GAAATGCGGATATCA             CATCGCC ACTG GGCCACG              GTCTTTATTTCGCGT  40 5
HAP49_RS20020 4204766 .. 4204780 -  -9.2  -3.53012   GCGTTTCTCCCCAAA               CGCCGA GCG CCGGCG               GCATGATTCGCGCCG  70 51
        xerD NONE
        dsbC 4202477 .. 4202492 -  -6.1  -3.14931   CTCACCGGCGATTAA              CCACC GGCTTT GGTGG               CGGCCTGGTGCGCAT  53 6
        recJ 4200686 .. 4200715 - -10.1  -2.72344   GGCGATCGGGAAGGA       TGCCGGGGATTGGA GAG CCCAATCCCCGA-A       TTGTGTTCAATTTCA  65 43
        prfB NONE
        lysS 4197899 .. 4197920 - -13.7  -5.90981   GTAGACGAAAAAAAA           CCGGCGCAG TTGC CTGCACCGG            TTGTTGCACGCTAAA 100 46
HAP49_RS19985 4197476 .. 4197496 -  -3.2  -4.15044   CCTCCTGCGAAGAAA            CGGACAAC CGCCT GCCATCCG            GGGCTAAACAGAAGT  59 248
HAP49_RS19970 4193957 .. 4193977 -    -4   -3.9122   TATCCCTGTAAATAA            TACGGC GTAATCTCT GCCGTA            CATTTATTCAACCCA  57 177
HAP49_RS19965 NONE
HAP49_RS19960 NONE
HAP49_RS19955 4190084 .. 4190115 - -13.1  -3.96624   TATCCCGACCAGAAA      TTCGGCCAGATGG CGCCAC CCACCTGACCGAA       CGCCCCCTTAACGTG  91 33
HAP49_RS19935 NONE
HAP49_RS19930 4185397 .. 4185408 -  -2.2  -4.05788   CTCTGGCAAAGGAAA                CGTCC ACC GG-CG                CGGGGTTAACCGGCG  55 31
HAP49_RS19910 4182338 .. 4182355 - -12.7  -4.72272   CGGCGGGAGGAAAAA             TGGCGCC ATAA GGCGCCA              AATCATGCAGCGATG 100 47
HAP49_RS19905 4181046 .. 4181063 -  -6.2  -4.08767   TCGAGTGGCGCAAAA             CCAGCG GCCTGT CGCCGG              TCAGAAGCAGCCGCA  65 401
HAP49_RS19895 4178099 .. 4178116 -  -8.3   -3.9122   CAGGTCGCGAAAGAA             GCCGGGC TGTC GACCGGC              ATCGTCAGCCACTAT  71 506
HAP49_RS19885 4176276 .. 4176297 -    -3  -3.71848   CGCGCGGACGAATAA          GCCG-C-CTC AAGG GAGCGCCGGC           GTCATGGCGTAACCG  52 10
HAP49_RS19870 4174121 .. 4174150 -  -8.7  -3.23274   TTGTCCATAAGTTAA       CTTATG-AATGGCG ACC CGCCATGGCATAAG       TGTGTTAAGCGCTCG  67 323
HAP49_RS19865 4172828 .. 4172838 -  -4.6  -3.16534   GAATGGGATGAAAAC                 CGCC TCA GACG                 TCGGCGATGCCCGCC  48 19
HAP49_RS19860 4171669 .. 4171727 - -14.3  -2.71144   CATCGTCTCCAACCA CGGCGGCCGCCAGCTGGACGGCGTGCTG TCGA CCGCGCGC-GCCATGCCGGCGATCGCCG ACGCGGTGAAAGGCG  75 284
HAP49_RS19840 4166107 .. 4166139 - -11.2  -2.59191   TCATACGGTGAGAAG      CACCGGCCCGCG TTGGTCTCG CTCGGGCCGGCG      TGAGTTAACCGATTC  70 30
HAP49_RS19835 NONE
HAP49_RS19830 NONE
HAP49_RS19820 4162929 .. 4162955 -  -3.6  -3.66028   GACAAGCTGTAACAA         CTGCTGCATGAA GCC CCCATGCAGGCG         CCGTGCTACCGATCG  54 31
HAP49_RS19815 NONE
        agaV NONE
HAP49_RS19805 4160388 .. 4160399 -  -3.6  -2.76261   TCGGAATCGTTAAAT                GCCA TCTT CGGC                 GTCCTCCTGCGGAGC  44 8
HAP49_RS19800 4159476 .. 4159490 -  -4.2  -2.70932   CGTGGCCGGTAATCA               CAATGC CTG GCATAG               CCCGCTCCTCACAAA  44 34
HAP49_RS19795 4159027 .. 4159046 - -16.4  -2.53905   GCATAACTCACGAAG            CCGGGCGC AAGC GCGCCCGG             TTTTCGTTCAGATGC  91 33
HAP49_RS19785 4156012 .. 4156028 -  -3.5  -4.07568   CCTGGCGGCGGAAAA              GCTGGCG GGA CGCGGGC              TGGACATGCTGCACC  58 374
HAP49_RS19770 4153450 .. 4153460 -  -6.8  -3.65351   GCATGGTGATGGAAA                 CGCA CAG TGCG                 GCGTCGGTGTGCGCC  59 296
        lysA 4150980 .. 4150993 -  -3.8  -3.88985   AAAACCGGCGACAAA               CGCT TTTACC AGCG                CATGTTGCCCATCGC  58 416
HAP49_RS19740 4146772 .. 4146789 - -11.3  -6.11644   GCAGGCAAAAAAAAA             CCTACGC ATCC GCGTAGG              TTGGTGCAATTGAAA 100 281
         aas NONE
        lplT 4143241 .. 4143257 -  -2.2  -3.68366   TCAGTTGAAAATCAA              CCTCGA CAGCC TCGACG              TGATTCTGGATGAGG  52 130
        rppH NONE
        ptsP 4136587 .. 4136607 -  -8.2  -3.54129   CACACGCCTTTCAAA            CGGCAGCG TTGAC CGCTGCGG            TTTGCAAGACGACGA  67 141
         lgt NONE
        thyA 4134786 .. 4134806 - -14.7  -5.61596   ATGCGGATAAAAAAA            GGGGCGCAA TCG CTGCGCCCC            TGGTGTGATGCGGTT 100 45
HAP49_RS19685 NONE
HAP49_RS19680 NONE
HAP49_RS19675 NONE
HAP49_RS19670 NONE
        recC 4129331 .. 4129342 -    -3  -3.04322   CCCAATGGTTGAATA                TAAC CTTC GTTA                 TTTTTACCACCTCCC  44 66
        ptrA NONE
        recB NONE
        recD 4120768 .. 4120790 -  -4.9   -3.5511   GCCGATGCAGAAACA          GGCGCTG-TA CAAC TACCAACGCC           GCTCCAAAATTCTGC  55 93
HAP49_RS19640 4117976 .. 4117993 - -10.5   -3.6543   CAATCCGCGAAAATA             GCCGGAC TCGC GCCCGGC              CCTGCCGTTATCGAC  80 33
        mltA 4116154 .. 4116172 -   -16   -3.6268   TAATGCAAATGATAA             GGGCCGGA AAA TCCGGCCC             TTGCGGGTCAATCTT 100 57
        tcdA 4115002 .. 4115019 -  -8.3  -4.08945   ATTATGCTCGCAAAA             CGGCTGC CGCC GCTGCCG              GAAGCCTTGCGCAGT  73 319
HAP49_RS19600 4113117 .. 4113135 - -10.3  -2.71712   GTTGTGTTTGCAAAT             TGTCCGG CGATT CCGGACA             TGGTAGCTAGGCTAC  69 132
HAP49_RS19595 4111909 .. 4111939 - -10.2   -4.7373   CTATCCCATTAAAAA       TCACCGGCCGCGGC AAG GCGGCGGCCGGCCT       TATTGTTCGTAGCGG 100 25
HAP49_RS19590 NONE
        rlmM 4110357 .. 4110376 -   -15  -3.88232   CTGCCGATACAATAA            GGGCGCTG CAAG CAGCGCCC             TTCATCAGGTTTAAC  95 45
         syd 4106468 .. 4106498 -   -17  -3.48505   TGGGAAAAATTAAGA       GCGATCTCTCACAC CCT GTGTGAGAGATCTC       TTACACGGGCGACGG 100 56
HAP49_RS19555 4104084 .. 4104118 -  -5.7  -3.53091   ACCGCCGCGGTTAAA    CCGAGCCGAAAGACGCC GTC GGC-TCTC-CTGCCCGG    CATCCGCGCGAGTAC  59 83
HAP49_RS19550 NONE
        pbpC 4095641 .. 4095651 -  -3.2  -2.56271   GCGCGAGTATAACAG                 GCAT GAC ACGC                 AACGCTAGTTCACCC  40 30
        truC 4094824 .. 4094838 -  -5.7  -2.61004   TTACCTTTAAAAATT               GTCAG CTATC CTGAC               CGTTAGCCGCGCTAA  50 12
HAP49_RS19535 4094282 .. 4094301 -  -7.8  -3.90922   ACCCGCGGCAAATAA            TGCGGTTC GGTT GACCCGCA             TCATCGCCAAGGCGC  69 63
        rpsB 4088226 .. 4088245 -   -15  -4.04576   ATTCAGATAAGCAAA            GGGGGCCT TAAC AGGCCCCC             CTAACCAACATATGT 100 82
         tsf 4087287 .. 4087310 - -16.8  -2.62184   TCTGGCTGGATAGTA          TGGAACCGCC AGAC GGCGGTTCCA           TCGACAGTCATTAAG  91 36
        pyrH 4086433 .. 4086446 -  -2.3  -3.04517   ACGCGCTCCGAAAAG               GGGTG TGAA CAGCC                TTATTTGCTGATCAG  42 26
         frr 4085728 .. 4085753 -  -9.7  -5.24129   CTGCGCCACAAAAAA         CAAAGCGCCGC CCAG GCGACGCTTTT          TTTCTGCGCGATGCT 100 43
        ispC 4084211 .. 4084229 - -10.3  -5.42259   TTACGCGCAAAAAAA             GCCGTGT GCCCG ACACGGC             TTTCAGCCTGCCCTC 100 213
        ispU NONE
        cdsA NONE
        rseP 4081137 .. 4081158 - -10.1  -2.52464   GTTCTTCCTAACCTA           TCCCCGCCC CTAG AGGCGGGAA            AAATCATTGAAAAGT  64 13
        bamA 4078607 .. 4078618 -  -4.4  -2.99704   GTCCCACCAAACAAT                GAGA ATCA TCTC                 CCTCTGCCGGCGGGC  47 91
         skp NONE
        lpxD 4076867 .. 4076879 -  -2.7  -4.56597   TCCTGTCTCTAAAAA                CTGAT GGC ATCAA                CAACACGGCCTGCGC  64 150
        fabZ NONE
        lpxA NONE
        lpxB NONE
        rnhB 4073796 .. 4073817 - -10.1  -3.07622   AGATACCTGATTGAA           GGGGCTCAG CAGG CTGAGCCCG            GGTTAATGCTATCGT  68 62
        dnaE NONE
        accA 4069279 .. 4069292 -  -9.5  -6.11644   GTAGCCAAAAAAAAA               CCGCC CGGA GGCGG                TTTCTTGCAGCGAAG 100 49
HAP49_RS19425 4067020 .. 4067048 -  -3.8   -4.8622   GCCGTCAATGAAAAA       GCCCGGCTTATCT TGCC AAACC-GCCGGGC        GCGTTATGGCCTTAT  72 37
HAP49_RS19420 4066519 .. 4066560 - -17.3  -2.78715   AAGGGCGCGATCATA GCATAACCG-CCCCCGGCTG TGG CCGCCGGGGGGCGATTAAGC CGTTAACTCTCGTAT  95 28
HAP49_RS19415 4064870 .. 4064902 - -10.5  -4.24413   TTCACCAATAAATAA      CGCCGCCATGATCCC CGA AGAATAAGGGCGGCG      TGATATTGGGTTAAT  88 40
        cadB 4063131 .. 4063171 -  -6.1  -3.51232   CTCCTGGCAAAGCAA GCCCCTTCCCGTCGCGGC TGACAG GTCG-GAAAGAAAGGGGC  TGGGTAAATTCAGTC  59 57
        cadA 4060932 .. 4060953 - -13.7  -4.05446   TCGGTGAACGACAAA           GGGGAAGCG CGAG CGCCTCCCC            TGTTTTTGGCTGCGG  93 41
        dtpD NONE
        tilS NONE
HAP49_RS19390 4057720 .. 4057739 -   -15   -3.0634   AACCCCATCCCAACA            GGGCAGCC CGAC GGCTGCCC             TCGTCATTTACGGCT  89 33
HAP49_RS19375 NONE
        arfB NONE
        nlpE 4055318 .. 4055331 -  -9.5  -5.60689   CCAGAGAATAAAAAA               CCCGC CTAG GCGGG                TTTTTTTATATTCGA 100 47
        gmhB 4048787 .. 4048801 -  -2.8  -3.12351   CTCTTTCAGAGTCAA               CCCTAA TTT TCAGGA               TTTTTTCTCTTTCTT  44 170
HAP49_RS19325 NONE
HAP49_RS19320 NONE
HAP49_RS19315 4046690 .. 4046727 -  -5.7  -4.49756   TGTTAAAGAGCAAAA   TACTTCGCAGCATACTG TCGC CAATATACTCTGAAGTA    TTGAAATACCGGACT  73 44
HAP49_RS19310 4043616 .. 4043626 -  -6.8  -4.58685   AAATCTCTCTAAAAA                 CACC TTC GGTG                 TTGTAAGGTTAAGCC  76 12
         rrf 4043379 .. 4043400 - -14.5   -4.8048   TTCCCATAGCAAAAA           GCCCTGAAC GTCA GTTCAGGGC            TTTCGGCTTTATTTG 100 43
HAP49_RS19300 4041346 .. 4041370 - -12.9  -2.91873   AGCAGGTGGAAATCA          TCGTCGGCGAT AAA ACCGCCAACGA          CTTCTATATTCCTGA  70 504
HAP49_RS19275 4035047 .. 4035066 - -16.4  -4.21141   CTTCAATAAACGAAA            CGGGCGCC CTGG GGCGCCCG             TTTTTTTATCCGACG 100 48
HAP49_RS19235 4026673 .. 4026690 - -10.5  -4.07687   ACGGCTGGGTGAAAA             CCGCCGC CGCA GCGGCGA              AGCCGTAACCGTTCA  84 64
HAP49_RS19215 4022446 .. 4022474 -  -7.4  -3.06915   ATCGAGTTGATGGAA        GAACCGGCGG TAAAAAACC CCGCCTGTTC        GGTGATCTTCATCAC  54 487
HAP49_RS19200 4018877 .. 4018894 - -12.7  -5.75342   CGCGGGCAAAAAAAA             TCCCCGC GGGG GCGGGGA              AAGGCAAAGTAACGC 100 57
HAP49_RS19190 4016650 .. 4016677 -    -7  -2.95126   CATAATCCCAAATTA        TCGAACAATGCC GCTG GGCTCTATTCGA         TGGCCGCCCAACGGG  54 53
HAP49_RS19185 NONE
HAP49_RS19180 4015478 .. 4015488 -  -3.2  -2.75022   CGTCGTAGACATAAG                 CGCT CCC AACG                 TCGGTCTGTTACATG  41 89
HAP49_RS19175 NONE
HAP49_RS19170 4014868 .. 4014894 - -10.8    -3.484   CTGAGGACATGACAA         CGATGCCGGTCT TTC AGGCCGGTATCG         TGCATTCAATACCCT  75 31
HAP49_RS19140 4008839 .. 4008852 -  -2.4  -4.84918   GTCATAAAGATAAAA               CAGA TGTGCG TCTG                GCCCGCGGAAATCGC  68 48
         asr 4007849 .. 4007871 - -14.9  -4.17048   GTCGCCTCAAAAGAA           GACACCCGG AAGAA CCGGGTGTC           TGGAGTACGGACTGG 100 79
HAP49_RS19115 4004952 .. 4004966 -  -2.8  -3.41393   ATGAGAGAGTGATAA               CGAATT ATT ATTTCG               CTAACGATTTTGCCG  47 18
HAP49_RS19110 4003672 .. 4003684 -  -4.8  -3.14132   TTTTCTGGGGAGGAA                TCCG GGTTT CGGA                CTATTCCTGAATCAG  48 37
HAP49_RS19105 4002861 .. 4002877 -  -7.9  -3.59262   TCCGACACCCGCAAA              GCCATCG ATT CGCTGGC              CCATCTGCTGAGGGT  62 403
        smrA 4001562 .. 4001574 -  -3.5  -4.46212   CGCTGGACTATAAAA                TATTT AAT AAATA                ATTCATCGATGGCCG  66 77
HAP49_RS19080 NONE
HAP49_RS19075 4000401 .. 4000418 -  -6.9  -3.21099   GCGCTGTACCACGAA             GACGGCG ATTT CGGCGTC              TGCTGAACGCTCGGG  58 66
HAP49_RS19065 3999213 .. 3999242 -  -7.8  -3.53224   TACGCCGCGCTGAAA       CCCGGCGG-GCAG TTCAT CTTCACCGCCGAG       CACCCGATCTACACC  60 398
HAP49_RS19055 NONE
HAP49_RS19050 3997702 .. 3997723 - -12.3  -3.64703   GTGCGCGCAGGCAAA           CCGTCCGCA GCGA TACGGACGG            CGTTACCCATGATCA  82 38
HAP49_RS19045 3995958 .. 3995973 - -11.8  -5.83822   TATAGCCAAAAAAAA              CCCCGC CACA GCGGGG               TTTAACGCATCACAT 100 55
HAP49_RS19035 NONE
HAP49_RS19030 3993818 .. 3993842 -  -4.9  -3.80733   CGTAGCTGAGAATAA          TGAGCAAATCC ATA GGCTACGCTCA          ACTTACCGTGGGGCC  56 23
HAP49_RS19025 3992607 .. 3992628 - -12.3  -4.76312   GATAATAGCGAAAAA           GCCCACAAC TTCG GTTGCGGGC            TTTTTTGTTTTTGTC 100 91
HAP49_RS19010 3989568 .. 3989598 -  -7.6  -4.36914   TCGGTCGCTATAAAA       GAAGAACCCCAT GCAAAAA ATGGGGCTCGTC       AGCAATCTGAACAGT  76 99
HAP49_RS19005 3989064 .. 3989075 -  -4.4  -3.65812   TTTTTCTTAACAGAA                CAGT TTGA ACTG                 CCCATTTCAGTCCAC  56 81
HAP49_RS19000 NONE
HAP49_RS18995 3985297 .. 3985335 -  -3.3  -3.06671   AGACCGATGTTAATA  CTCGAAACA-AGTTTATT GATG AAGAAACTGCGTCCCGAG   TATTAGATCTGGCGT  43 59
HAP49_RS18980 NONE
HAP49_RS18975 3982483 .. 3982504 - -12.3  -4.76312   GATAATAGCGAAAAA           GCCCACAAC TTCG GTTGCGGGC            TTTTTTGTATCCGTA 100 126
HAP49_RS18960 NONE
HAP49_RS18955 3980649 .. 3980669 - -14.1  -5.71712   CTTCAGATAAAAAAA            TAAGGCGCT ATA AGCGCCTTA            TTTTTTTGCCTTTTC 100 23
        grpE 3976592 .. 3976607 - -10.4   -5.4251   TCCAGAGACAAAAAA              GGCACC CTCG GGTGCC               TTTCTTTATGCCGTT 100 51
        grcA 3975128 .. 3975143 - -10.4  -4.81249   CGCCAAACGCAAAAA              GGGAGC CGAA GCTCCC               TGATTGACTGCGCCG 100 45
HAP49_RS18920 NONE
HAP49_RS18915 3973236 .. 3973251 - -10.4   -5.4505   CTGTTCAAGAAAAAA              CCGCCT TTAC AGGCGG               TTTTTTTATGGGCGT 100 41
HAP49_RS18905 3970743 .. 3970777 -  -7.9  -3.21099   CGTGCGCACCACCAA    GCGCCTTGA-GCG-CGC CCT GCGCCGCATCAATACGC    TGCAGGCGGAAATCG  56 258
        rpoE NONE
        rseA NONE
        rseB NONE
        rseC 3966087 .. 3966116 -  -9.9  -3.14931   GTGATCGTCGACCAA       CAGCTGCAGCAGC GCGG GCCGCTGGCGCTG        AATGCGCTCTATCAG  64 373
        lepA 3963272 .. 3963284 -  -4.1  -3.26298   ATCAGGGCAAACATA                TTCGC CAT GCAAA                CTCCCTCGTTTCGCG  48 53
        lepB 3962311 .. 3962324 -  -5.2  -2.64199   CAGCGATTAATGAAT               GCCG CCGATC CGGC                TGAAACGCACGCCGG  47 3
         rnc NONE
         era NONE
        recO NONE
        pdxJ NONE
HAP49_RS18840 3958535 .. 3958551 - -15.1  -3.37796   CCGCAGGACTGACAA              GGGCGCC ATA GGCGCCC              TTTCTATTTTCAGCT  91 35
        murQ 3956296 .. 3956310 -    -7  -3.34895   CCCACCGTGAATTAA               CGCGCC AGC GCCGCG               CGCAGGTAGCCATCG  60 7
HAP49_RS18820 NONE
        yfhb 3954219 .. 3954244 - -19.1  -3.76186   TACCGATAAAAGCAA         CCAAGGGCGGA ATTC TCCGCCCTTGG          CTTATTCCAGCTGCT 100 27
        tadA 3952439 .. 3952457 -  -8.8  -4.38876   GGAAAAAGAGAGAAA             GGCGGC GCAGGCG GCCGCC             GAGCAGGAAGCGTTG  79 89
        purL 3946850 .. 3946869 - -13.6  -5.24129   GCCGGCCATAAAAAA            GGGCGCAA TTGC TTGCGCCC             TCTGTACGGTGGTGA 100 47
HAP49_RS18790 NONE
        qseG NONE
        glrR 3942326 .. 3942338 -  -9.1  -3.29511   CGGATTTGTTGAGAA                CCTGC GTG GCAGG                CGCCGGCGGGAAACT  67 42
HAP49_RS18775 NONE
        glnB 3940204 .. 3940223 -   -15  -3.65986   GAGCAGAAATGACAA            GGGCGCAG CATG CTGCGCCC             TCCTGATGGCCGATG  95 54
HAP49_RS18765 3939092 .. 3939107 -    -4  -3.45593   AACAAATTCTAAATA              CTGAACG ACG CGTTC-G              ATTAAATCGAATGCT  50 27
HAP49_RS18760 NONE
HAP49_RS18755 NONE
HAP49_RS18750 NONE
HAP49_RS18745 NONE
HAP49_RS18740 NONE
        patD 3932018 .. 3932028 -    -4  -4.17425   ATAATTATTGTAAAA                 TCAA TGT TTGA                 ACATCACATGACGAA  61 15
HAP49_RS18730 NONE
HAP49_RS18725 3928330 .. 3928350 -    -9  -3.15861   CAGCAGGCGCAGGAA            GGCGACGT GATCG ACATCGCC            CCGCCGCACGGCGAC  61 516
HAP49_RS18715 3925967 .. 3925980 -  -9.5  -5.60993   GCGGCCATAAAAAAA               CCCGC CGCA GCGGG                TTTTGTCAGGCGAAA 100 47
HAP49_RS18710 3924656 .. 3924689 - -10.1  -3.53091   AGCTGCCGCTGGAAA     CCCGGCAGCGCCAGG CCAT CCGCGCGCTGCTGGA      AGCGCCTTAATCAAC  74 36
HAP49_RS18700 NONE
HAP49_RS18695 3921571 .. 3921588 - -12.7  -5.53288   GCGAATCGAAAAAAA             GCGCTGC CGAT GCAGCGC              TTTTTTTATGCCCGT 100 40
        trmJ 3919815 .. 3919847 -  -4.4  -3.75105   TGAACTTAGCAAGAA     CAAAGGTATATAAAA TACA TGTTATA-ACCTTTG      GATAACTAATACTAT  56 67
        iscR NONE
        iscS NONE
        iscU 3917491 .. 3917507 - -15.1  -3.84266   ACACTTCACATCAAA              GCCCGGC GCG GCCGGGC              CGACTCAGACAAATT  95 39
        iscA 3917108 .. 3917131 - -10.2  -3.16564   GCGTTAGCGGATGAA          GTTCCCCCGC CGAA ACGGGGGAGC           ACGATGGACTGTCAG  71 37
        hscB NONE
        hscA NONE
         fdx NONE
        iscX 3914075 .. 3914095 - -16.1  -4.83243   CGGATACAAAATAAA            CGGGCCGCC CAT GGCAGCCCG            TTACGCTATTTACTC 100 35
        pepB 3912660 .. 3912683 -   -16  -2.67667   CCAGGGATCAAATAG          CGAGGCCCAG CATG CTGGGCCCCG           AAGATAATGCGCATT  86 68
        sseB 3911671 .. 3911694 -  -4.4   -3.6581   ATGACTTCCAAAACA          GGCCGGTCTGC AAT GTTG-CCGGCC          TTCTCAAGTGGCGCA  56 137
         ndk 3911083 .. 3911116 - -19.7  -4.72272   TGGCGGCACTAAAAA     CACGCCCCTGACAAG TCGT CTTATCAGGGGCGCG      GCATTGTACAAATTT 100 127
   trmG/rlmN 3909725 .. 3909736 -  -3.6  -3.05384   TCGGCCGTCAGCTAA                CGCC CGCC AGCG                 ACACGCTTTCGCATA  46 78
        pilW NONE
        rodZ 3907981 .. 3908017 - -12.9  -2.62184   GCTGCTCTGACATCA    CGACCGGTGCCGCGC GATTACT GCGCGGCGACGGTCA    GGCGAGCAACACGGT  76 6
        ispG 3906795 .. 3906812 - -14.1  -4.07133   CAGGCTCATAAACAA             GCGGGCC AACA GGCCCGC              CGTGTAGCGATAACG 100 42
        hisS NONE
HAP49_RS18600 NONE
        bamB 3903414 .. 3903437 - -14.6  -4.10958   TTATAAAATACGAAA          CGGCCCCTGA ACAC TCAGGAGCCG           TTTTCCCCTTCATCT 100 176
         der 3901807 .. 3901830 - -19.6   -5.4505   CGGGCCAATAAAAAA          GGGCGCGGCA TCAC TGCCGCGCCC           CTCATAAGCGATTAC 100 37
HAP49_RS18585 3900792 .. 3900810 -  -8.8  -3.60296   GACTCCCAGGTTAAA             TCGCGCCC CAT GAGCGCAA             AAAATAGATCCCCAA  70 2
HAP49_RS18580 3900081 .. 3900121 -  -4.6  -3.85817   ACGGTGTGCGACAAA GCGCTGCCGCAAAATGCCG ATTT CGCCACCTT-CGCCCGCGC  CACGGTGAAACATGC  60 456
HAP49_RS18560 NONE
HAP49_RS18555 3893956 .. 3893976 - -11.8  -3.61715   CACCGTCGCCAAGAA            GCCGCGCA AGAAA CGCGCGGC            CGAATAGCCCCTACC  82 36
        guaB 3890910 .. 3890954 -    -4  -3.21168   AAAAAGAGCGAAAAT GTATGTTTTCGGGATGGGGC TTGGC GCCCCACCCCGGCCTCTCAC TCAGGAGAGGTTAAG  48 44
        guaA 3889226 .. 3889245 - -12.2  -5.42975   TCATATAAAGAAAAA            CCCTCTGT AAAA ACAGAGGG             TTTCAGTCACGTCGG 100 72
HAP49_RS18530 3887266 .. 3887282 -  -9.3  -4.19177   ATCGGCGAAGATAAA              GCGCCGG AAA CCGCCGC              CGCCTACGACAACAC  79 446
HAP49_RS18515 3884756 .. 3884782 -  -7.2  -4.77036   TCCGACGATGAAAAA         CCAGGAAGCGGT AAT ACCGCCTCCAAA         GCGAATTATTTATGC  85 31
HAP49_RS18510 3881467 .. 3881485 -   -16  -5.31275   TCTCACCATAAAAAA             GGCCCGCA TCA TGCGGGCC             CGTCGGTACCAGAGA 100 56
HAP49_RS18495 3877379 .. 3877393 -  -4.9  -3.19003   ATAAGACCTTACCAA               GAGGC CGATC GCCCC               TTCCTGCGCACGCTG  48 412
HAP49_RS18470 3873164 .. 3873177 -  -2.3  -3.82531   AAACAAGCGATTAAA               TTGGC TCGC GCCTA                AGCGATGCTTCCCTC  53 23
        thiM NONE
        thiD 3871316 .. 3871341 -  -7.6  -4.36914   GTTTCGCCCATAAAA         CCG-GGCCTGA ACTAG TCAGACCACGG         TTGCGGCAAAAAGTT  76 44
HAP49_RS18455 3870782 .. 3870813 -   -15  -3.14564   GCATCGGCTGATCAA      CGCCGGGGGCGCCG GCAG CGGCGCCCCCAGTC       TGATTATTTCCAGTC  89 29
HAP49_RS18365 NONE
HAP49_RS18360 3852548 .. 3852560 -  -5.5  -4.81551   CAGCCACATCAAAAA                CCTGC GCC GCAAG                CTGGAACTGATCGAT  80 132
HAP49_RS18325 3840404 .. 3840414 -  -5.4  -3.61715   CAGTTTCCTGAATAA                 GTCA TAT TGAC                 CCCTTCAGCATAGAG  56 59
HAP49_RS18320 3839747 .. 3839764 - -12.7  -3.60792   GGCTTAACCGGCAAA             CGTGGCG CGAA CGCCACG              GCGATTAATACAGCG  83 30
        alkA 3835795 .. 3835806 -    -3  -4.21462   AGGGACTATGGAAAA                GAAA TGGT TTTC                 CGCCAGGGAACTGAT  61 368
HAP49_RS18270 NONE
        pstA NONE
        pstB 3821458 .. 3821491 - -19.7  -3.28497   GGACTTTAAATTCAA     TGAGCGGCGTAAACC CACC GGTTTGCGCCGCTCA      TCCCTCACCCATACC 100 30
HAP49_RS18255 3820025 .. 3820052 - -11.4  -5.24531   ATTCGCGAGAAAAAA        GAAAAAACCCGC CCAG GCGGGTTTTTTA         TTGGGAAATAAGTGG 100 422
         upp 3816758 .. 3816776 -   -11  -5.81412   TTTAGTCAAAAAAAA             GCCGACTC ATT AAGTCGGC             TCAAATGTTTACTTG 100 34
        uraA 3815393 .. 3815412 -   -15  -4.21194   TGCCATCAGTCAAAA            GGGCAGCC CCTG GGCTGCCC             TTTTCGTTACTTCTG 100 32
         hda 3813219 .. 3813268 - -12.1  -2.65476   ACGATTTACCATAAC CCGCGCTGCTCCAAGAGC-CGTGA AAC CCTGGCGCTGCTGGAGCAGCACGG TGTCGATCCCAAGGT  65 351
HAP49_RS18195 3810723 .. 3810762 -    -5  -3.14132   GTGTTTTCGGATGAA CGATGCCGTTCCGCTCCC GTAACA GGGTGCAGAA-GGC-CCG  CCCGCCCCTTCCGAA  51 86
HAP49_RS18190 3809413 .. 3809444 -  -3.6  -4.07568   CTGCCGTTGGGAAAA      TGAGGACGGGAACG TTGC CGCTCCCGTTTTGA       CGACCTTAAGGCACA  59 31
HAP49_RS18180 3807962 .. 3807974 -  -4.7   -3.6442   AACATTCCAAAAAAG                CGGGC TGG GCCTG                TGGCTGGCGGAATGT  55 193
HAP49_RS18155 3804778 .. 3804807 -  -6.5  -4.74706   GGCAAGATTGAAAAA       GTGTTTGATGATT TCAA AACCACCAATCAC        CACGACATCGTTCTG  81 103
        dapA NONE
        bamC 3801680 .. 3801705 - -16.3  -4.61199   ACCGTATAGACAAAA         CAAAAAGGGGC CGAA GCCCCTTTTTG          ATTAGTTAACGCTGG 100 27
        purC 3800780 .. 3800805 - -16.9   -2.5967   AAAAACGCAGAATAG         CGGGACGATCC GGCC GGATCGCCCCG          AATGACGGTGCCGAC  91 43
HAP49_RS18125 3799714 .. 3799734 - -12.6  -5.47399   TCAATCCGAAAAAAA            TGCCGGAG TCAGG CTCCGGCA            CTTGAGGCGTTAACG 100 35
HAP49_RS18120 3797580 .. 3797610 -  -5.3  -4.78753   TTAATAGTAACAAAA      CCTGGTGTGGCGAC AGTC GCCGCCGCACC-GC       TGACAGTGACTATAC  76 90
        ypfH 3796837 .. 3796860 - -13.9  -3.20498   GAAAAAGAAATGACA          TCAGGGCGC TCATCG GCGCCCTGA           GTTTTTAGCGAAAGG  83 30
HAP49_RS18085 3792696 .. 3792706 -  -3.2  -3.53811   GCTACGTGCGTTAAA                 CGTG CAT CACA                 AGGTTTTGCTCATAA  49 21
        ypfM 3791391 .. 3791414 - -12.4  -5.76633   CGAGATATAAAAAAA          GCAGCGTCGG GTTA CCGATGCTGC           TTTATTTCGAACGAA 100 94
HAP49_RS18060 3787622 .. 3787673 -  -4.1   -4.4648   ACCTGGAGTACAAAA GCCACTGATCGCCCCGCCCCGGC CAATAC GCCGGGGCCGCTTACTCGATGGC GCTGAGCAGCGCCTG  66 14
        nudK 3784201 .. 3784219 - -14.6  -5.26316   CCAGCCGATAAAAAA             GCCGGTCA TCA TGACCGGC             TTTTTTTATTCCATC 100 31
HAP49_RS18025 NONE
HAP49_RS18020 NONE
HAP49_RS18015 NONE
HAP49_RS18010 NONE
        dhaL NONE
HAP49_RS18000 3773707 .. 3773739 -  -4.2  -3.62096   GCCTACCAGTGCAAA     CTGCA-GCT-CAACAC GCA GTGCGGCAGCGTGCAG     TACGAACCGCAGAGC  53 524
HAP49_RS17990 3772162 .. 3772184 - -10.5  -5.75599   TAAACCATAAAAAAA           CCCCGTAGC CGAAT GCTGCGGGG           TTTTCATTGAGTTAA 100 76
HAP49_RS17980 NONE
HAP49_RS17975 NONE
HAP49_RS17970 NONE
HAP49_RS17965 3769100 .. 3769124 - -11.3  -4.10164   GGACGAGCAGAGAAA          CGCCGCCGTCA GCG CGGCGGCAGCG          TGGCGCGCCAGGCGT  86 9
        maeB 3766569 .. 3766595 - -20.8  -5.63517   GCTGGAAATAAAAAA         GCCCCCGGCGCC AAC GGCGCAGGGGGC         CAGTCACTCATCCCG 100 44
HAP49_RS17955 NONE
HAP49_RS17950 3765599 .. 3765623 - -12.1  -3.12327   GCGCGACAGCCAACA          CCTCAGCGACG GCA CGCCGCTGACG          GAGGTCATGTCCGCA  70 344
HAP49_RS17935 3762516 .. 3762527 -    -3  -2.64091   AATGATTGCAGATCA                CATT TACT AATG                 ATAATCATTTGCAAC  40 76
HAP49_RS17930 3761646 .. 3761673 -  -2.5  -4.15106   CACGAAGTTTGAAAA        GGCGGACGGCG GCGAGG CGGCGTCTGCG         GGCATTAACGGCGGG  57 30
HAP49_RS17925 3759428 .. 3759443 -  -2.4  -4.73388   AATGCCCAGCAAAAA              GCCCGC CGAA ACGCGC               GGTAAAAGATTGTTA  65 79
HAP49_RS17920 3757080 .. 3757098 -   -16  -2.75844   TGCTGCAGGCGAAAC             GGGCGCAG TGA CTGCGCCC             TGCTCTGCTGCGGTT  88 40
HAP49_RS17900 3753802 .. 3753839 -    -9  -3.28001   CAGGCGCAAACGCAA   GCCGCTCCGCAGGGCGG TTTCT CCGGCCC-CAGCGCGGC   GCTGACCACCGTGGA  63 323
HAP49_RS17890 3752925 .. 3752951 - -15.9  -2.58999   TCCTTAGACATCAAT        GGCACGGCGCGG TAGC CCGCGCC-TGCC         GCACTCGGCGTTTTG  86 133
HAP49_RS17885 3752285 .. 3752303 - -13.1  -2.74605   TGGCTTGAAAAGGCA             GGCGCCG CGAAC CGGCGCC             CGTTGAACACGTTAC  77 37
HAP49_RS17880 3751205 .. 3751229 - -17.2  -3.44792   GGAAGGGAAAACAGA          CCGAAGCCGG ACGCG CCGGCTTCGG          CGACGGCATCAAAGT 100 34
HAP49_RS17875 NONE
        cysT NONE
        cysW NONE
        cysA 3747177 .. 3747194 - -11.3  -4.98531   TGCGTAAAGTAAAAA             GGCAACC CCGG GGTTGCC              TTAAAGAAAAGGACT 100 53
        cysM 3746220 .. 3746242 -    -9  -3.33671   ACAGGGAGGTGAGAA           GGCGTTTCCC GGC GGGACGCGCC           GCCGGGAAGGAACGG  67 41
HAP49_RS17850 NONE
HAP49_RS17845 3743938 .. 3743954 - -15.1  -5.19212   ATGAGCAGTAAAAAA              CGGCGCC CTT GGCGCCG              TTTTTTTATCCCTTC 100 63
        zipA 3737702 .. 3737718 - -10.8  -5.22289   CATCAAAGATAAAAA              CCCCCG GCTAG CGGGGG              CTTTGTTGTTACGGA 100 65
        ligA NONE
HAP49_RS17805 3735422 .. 3735439 - -12.7  -6.06723   GCGGGTAAAAAAAAA             GACGGGC CGAG GCCCGTC              AGTTCAGCTTTTCTT 100 29
HAP49_RS17795 3733328 .. 3733348 -  -6.8  -4.17657   GAGCAGATGGCAAAA           GCCG-CGGC GCAA GCCGGCGAC            GGCGTAAACCGCCCA  69 75
HAP49_RS17780 NONE
        eutC 3729708 .. 3729724 -    -8  -3.96148   GCCCGCTACCACAAA              CAGCAG CCGGC CTGCTG              GGCGCAGATCCTCGA  68 296
        budA 3727871 .. 3727900 -  -6.4  -4.63932   CACCTCCTAAGAAAA      CGAT-CGCCG-GGG TTAG CCCTCGGCGGAACG       AATCGCGCGATCCAA  76 8
        alsS 3726115 .. 3726141 - -10.1  -4.82901   TTCCGCGCATAAAAA        CGGGCAGG-CGC GCAA GCGGCCTGCCCC         GGTGAAACCACGCGA 100 49
HAP49_RS17755 3724414 .. 3724431 - -14.1   -4.7497   CGCAGGCATGAAAAA             GGCCGGG TTAA CCCGGCC              TCTTGGTTATTTCTC 100 32
        gltX 3717670 .. 3717692 - -11.3  -5.14965   ACCGCCATGAAAAAA          GCCCCG-GGA TTGC TCCTCGGGGC           TTTTTCTTTATGGCG 100 51
HAP49_RS17700 NONE
HAP49_RS17695 3716319 .. 3716336 - -12.7  -5.07011   GACACAAAGCAAAAA             GCCGACC CTAA GGTCGGC              TTTTTAAATGTTGGT 100 37
HAP49_RS17685 3713388 .. 3713421 - -18.9  -3.15861   GACGACCGCGATTAA     CAACGACGGGCCGGCG CAA CGCCGGCCCG-CACTG     TTTTCGCTTACAGCA 100 33
HAP49_RS17670 3709506 .. 3709522 -  -5.1  -5.09426   TGGAAGTGCAAAAAA              GTTATCC GCC GGATATC              GCCTTCTCCCGGCTG  83 418
HAP49_RS17660 3708478 .. 3708492 -  -5.7  -3.33162   GACCTTACCTGAGAA               TCGTC GGTCT GACGA               CGCCTTATTTGGCGC  55 30
HAP49_RS17655 3707417 .. 3707443 - -10.1  -3.15861   CATTACCCTGACCAA        GCTGGCGGCGCT GGTG ATCGCCGCC-GC         CTGCGGTTTTCGCGG  64 320
         glk 3705171 .. 3705196 - -20.5  -3.68359   CTGCGAAAACGACAA         GGGGCGCAACC TGCG GGTTGCGCCCC          TTTTTTATTGCCCCG 100 50
HAP49_RS17635 3702795 .. 3702822 -    -4  -4.58663   ACCATGTTGCAAAAA        CTG-GAGGCGCTG CAT CATCGCCCCGCCG        GCGCGACGGAGCCGG  72 395
HAP49_RS17615 3698656 .. 3698702 -  -4.6  -2.54896   TGGCCAGCGAACTGA CCGAATATCGAACATAGCGCAGC GCCG GC-GAGCT-TGT-CGATACCCGG CGCGATATTTTTATT  44 36
        alaC 3697333 .. 3697358 - -14.7  -5.08824   TTGGGACGGAAAAAA         TAAGGCCGGGC GAAC GCCCGGCCTGA          CAGGGTTATTTGGCG 100 31
HAP49_RS17605 3696683 .. 3696715 - -17.2  -3.18849   GCCACACCAGGAACA     CAGACAAAGGGACGC GCAA GCGTCCCTTTGTC-G      TTTCGGCTAGCGCTC 100 39
HAP49_RS17595 3695412 .. 3695429 - -14.1  -3.60805   ATACCCGATTTTAAA             GCCCGCC ACAC GGCGGGC              TTTCTGTTCACGACG  89 46
        pgaA NONE
        pgaB NONE
HAP49_RS17575 NONE
        pgaD 3687403 .. 3687437 -  -7.7  -4.38712   TTTACCCCGATAAAA    TGCCCGGCTGCTTGCC ATCC GGCCACC-GCCGGGCG     GTCAATGATTATGAC  76 504
        mltB 3686052 .. 3686067 - -11.8   -5.1925   TCAGAACGCAAAAAA              GGCCGC GCAA GCGGCC               TTTTTCGTTTATTGA 100 48
HAP49_RS17550 NONE
HAP49_RS17545 NONE
HAP49_RS17540 3682766 .. 3682793 -  -6.2   -4.2717   AGGACTGGATCAAAA        GCGGCGAACTGA TCAT TCCGTTCACCGA         CATGACCGTGCCCTG  71 149
HAP49_RS17520 3678434 .. 3678450 -  -5.7  -2.53876   TTTCATCTCAACTTA              CCGCGAC AGT GCGGCGG              GTTGATTCGGCAATC  49 1
HAP49_RS17515 3678164 .. 3678184 -  -9.7  -5.27335   GGCCGCAAACAAAAA            GCCCAGC ACGCGAG GCTGGGC            TTTTCATTAACGGCC 100 44
HAP49_RS17510 3676561 .. 3676587 -  -7.3  -3.19192   CCGCAGTTAATTGAA        TGGCTTGCCGGC CTGA GCCGGCAA-CGA         TTGTTCGACCAAGTT  61 137
HAP49_RS17505 3675080 .. 3675112 -    -7  -4.89233   CAGCAAGAGGAAAAA     CGGCG-CCACGGC GGGGAAAA ACCGTGATCGCCG      TCGGTCAGGCGAGGA  82 317
        ccmA NONE
        ccmB NONE
HAP49_RS17480 3671794 .. 3671813 -    -2  -2.97743   GACCAGGAATCAAAC            GCGGCATT CATG ACTGACGC             TCCTTATTCACCAGC  41 13
        ccmD NONE
        ccmE NONE
HAP49_RS17465 NONE
HAP49_RS17460 NONE
HAP49_RS17455 NONE
        ccmI NONE
        mlaA 3666057 .. 3666072 - -11.8  -5.40072   GCGGGCGTAAAAAAA              CCCGCC AGAC GGCGGG               TTTTCATTGGCATAA 100 50
HAP49_RS17435 3663915 .. 3663942 - -12.7  -3.03865   TACGGGAAAGGAAAT        CCCCGGCG-CAC AACAG GCGGCGCCGGGG        GTAAAGCCGGGATTA  79 38
        fadI NONE
        fadJ 3660050 .. 3660066 -  -4.4  -4.86731   TTTGCCTAAAGAAAA              CGCTGT TTTTT ACAGCA              ACCCTCCCCGGGCAA  74 242
        sixA 3659356 .. 3659390 - -15.8  -3.85817   AGCCCCCCTCAGAAA     CGACTCAGGGCGATGT CAG ACATCGCCCTGAGTTT     ATTCCGCACCGCATC 100 47
        prmB 3657704 .. 3657716 -  -4.7  -2.71712   GCGGGCCTTGGAAAT                GCGGC TTA GCTGC                GATAGAGGCTGAAGT  45 18
        aroC NONE
        mepA NONE
HAP49_RS17395 3654885 .. 3654905 -  -7.5  -3.18386   ATATCCGATAAGACA            GGGCGCG TAAGCAG CGCACCC            TCTTCATCTTTAACC  61 35
HAP49_RS17390 NONE
HAP49_RS17385 3653720 .. 3653737 -  -8.3   -3.5393   ACCAGCGCGGCGAAA             CCGTCGC CGAT GCGCCGG              TCTATCCCGGCCTGT  65 251
        fabB 3650464 .. 3650481 - -14.1  -4.72272   TTCGGGCAGTAAAAA             GCCCGCG AAAA CGCGGGC              TTGATGGCGAGGTGA 100 54
HAP49_RS17370 3650034 .. 3650055 - -10.1  -5.38047   CAGTGAGATAAAAAA           GCCCGGC GCGCAATG GCCGGGC            TTGGTCCTGTTCCGC 100 46
HAP49_RS17360 3647464 .. 3647474 -  -8.2  -3.28637   CAGCAACATCAGCAA                 CGCC ATC GGCG                 AGGACCGGCGCGCTA  60 279
HAP49_RS17350 3644981 .. 3645000 -  -4.2  -2.53015   ACAGCGCCCAACTGA            TGCAGGCGG TCA CCGCC-GAA            TTCATCCGCCAGGGG  41 395
HAP49_RS17340 3642864 .. 3642887 -  -3.6  -3.82665   CAGCAGATCACCAAA          CTCAGCGCCG CCAC CGGCGAAGCG           CCGGCTAAAATCTGG  56 498
HAP49_RS17330 3641734 .. 3641753 -  -2.1  -2.60798   CCATAAATGATTAAT            TCACCACG AAAAA CG-GGCGA            TTAACTCATTCACGG  39 31
HAP49_RS17325 NONE
HAP49_RS17320 NONE
HAP49_RS17315 3638461 .. 3638476 -  -7.5  -4.94222   AATAACGGAGAAAAA              CGCCG GTTAGA CGGCG               GCCCACCACAGCCGC  87 16
HAP49_RS17305 3635708 .. 3635731 -  -3.8  -4.65916   GTTACCGGAATAAAA          GCCACGGA ACGGAATG TCTGTGGC           CGTGTTGTCGTTCAC  68 130
HAP49_RS17300 3635023 .. 3635043 - -19.7  -3.67976   CCGAGTAACGCGAAA            CGGGCGGGG ATC CCCCGCCCG            TGGTGTTTAACGGCG 100 32
HAP49_RS17280 3631384 .. 3631394 -  -2.4  -4.44461   AATAAGGGGATAAAA                 GAGC GCC GCGC                 CGCCAGTTTTGGGAG  62 84
        tctD 3630597 .. 3630627 -  -3.3  -3.32698   GCAGTTGATAGAACA      GCGAACGCGGGGCGT TAA AC-CACCGCATT-GC      ACAGCTCCAGGCTGT  46 9
HAP49_RS17270 3629201 .. 3629221 -    -4   -3.9122   GAGTCCTGCAAAGAA            CAGGCT TAAGGCAAC AGCCTG            AAACGCACCCGTACC  57 10
HAP49_RS17260 NONE
        pdxB 3626150 .. 3626171 - -13.7  -3.14989   ATTCATAAAAGCACA           CGGGCAGTG CAAT CACCGCCCG            ATAATCTTTACCGCT  81 77
HAP49_RS17250 NONE
        truA 3624256 .. 3624274 -  -2.4  -2.64061   CAGAAGCACAAGGGA            GCGACGC TTTCAG GCGT-GC             CGGCGTTTAATCGTC  39 32
HAP49_RS17240 3623393 .. 3623430 -  -7.6  -5.27477   ACCCCAATGAAAAAA   TGCC-CGTTCGCGGCGC GGCAA GCGCGGCGACTGAGGCA   TCGGCTTCAGGGTTG 100 135
        accD 3622270 .. 3622280 -  -2.4  -3.54424   CCTCACCGCGGTAAA                 GGCG ATG CGCT                 TCGTGACTGCCGCCA  47 144
        folC NONE
        dedD 3620076 .. 3620104 - -10.3  -5.38054   CGTTACAAATAAAAA        GCGGCGATCAAAA AAT TCCCAATCGCCGC        GCCTACATAGGTGAT 100 126
        cvpA NONE
        purF 3617876 .. 3617905 - -17.1  -3.24925   AGTTCACAGGAGCAA       GGCGCACCGCCGC AGAC GCGGCGATGCCCC        CCCCCCGAGTAATCA 100 51
HAP49_RS17210 3617076 .. 3617108 -  -6.7  -4.21408   AACCGCAAAATTAAA      TCGGCCGCTCGGGGC CGC GCCACTGGCAGCCGC      GATAAGGCGGCGCCA  71 139
        hisJ 3616085 .. 3616108 - -11.6  -2.74012   CTAGGATCCGAACCA          TCGGGGCCGG CACG CCGGCCCCAC           AGTCACAGCATGGAA  71 52
        hisQ NONE
HAP49_RS17195 NONE
        hisP 3613845 .. 3613860 - -11.8  -2.71364   TGACGTTGTCAATCA              GCGGGC CGAA GCCCGC               TGATCTGAGGTTACT  74 36
        yfcE NONE
        yfcD 3610354 .. 3610370 - -13.7  -5.69473   CACAGCATAAAAAAA              GCCGGTC GAT GACCGGC              TTTCTCACGCGTTGG 100 45
HAP49_RS17155 NONE
HAP49_RS17150 NONE
HAP49_RS17145 NONE
HAP49_RS17140 NONE
HAP49_RS17135 3604931 .. 3604951 - -18.3  -5.37345   TTGAACGATAAAAAA            GCGCCGGTC ATT GACCGGCGC            TTTTCTTTTGCGTTC 100 42
HAP49_RS17120 3600628 .. 3600644 - -11.5   -4.8048   CGCTTAGACGAAAAA              GGCCGCA CAG CGCGGCC              TTTTTTCATTTACAG 100 35
HAP49_RS17115 NONE
HAP49_RS17110 3599297 .. 3599312 - -11.8  -5.70829   AATAGCATAAAAAAA              CCCCGC CGAG GCGGGG               TCTAATCAATTAGGG 100 56
HAP49_RS17105 3597420 .. 3597433 -  -4.5  -4.56597   CTGCGCCGTTAAAAA               CCGTA GAGC CACGG                CACCACAATCACGCT  68 5
        lrhA 3593619 .. 3593636 -  -9.1  -5.77853   AACGGCCAAAAAAAA             CCTCCGC CGAA GCAGAGG              TTTTTCATCAGATAT 100 53
        nuoA NONE
HAP49_RS17080 NONE
        nuoC NONE
        nuoE NONE
        nuoF NONE
        nuoG 3585218 .. 3585232 -  -3.4  -2.74263   ACCTCAGGGGTAAAC               CAGCTC ATC GTGCCG               CCTCCCGCAGATTGT  41 15
        nuoH NONE
        nuoI NONE
        nuoJ NONE
        nuoK NONE
        nuoL 3580916 .. 3580952 -  -9.4  -3.72453   ACGAATAATTTCAAA    CTTTGTACGTAGCGCC TGCCC GGCGCTACGCCCGAAA    AATGCGTCTGTTTAA  73 50
        nuoM NONE
        nuoN 3577851 .. 3577866 -  -8.2  -5.60993   TCGCCCATAAAAAAA              GGCCGC CGAA GCGACC               TTTTTACTGTCTGAA 100 47
HAP49_RS17015 3574728 .. 3574755 -  -4.1  -3.14848   TGCCGCGAGTAAAAT       GCCAGG--CGCCG CGCG CGGTGAACCTGGC        GAGTTGAAAAAACAG  46 48
HAP49_RS17010 3574244 .. 3574262 -  -5.9  -3.14211   ATCTTCTCTTATTAA             CGGCCTT TGGAC AGGGCCG             TATCAACACTACCCG  53 34
HAP49_RS17005 NONE
HAP49_RS17000 3572711 .. 3572724 -  -3.8  -4.41348   TTCGCCCTAAATAAA               TGCG TCTTCC CGCA                TGCCACGCGGCTTCA  64 109
HAP49_RS16995 3571322 .. 3571344 -  -9.1  -5.67063   TGTATCACAAAAAAA           GCCAGCGTG ACGAG CACGCTGGA           ATAACACAACACCAG 100 107
HAP49_RS16990 3570594 .. 3570613 -  -6.4  -3.55604   CCACCGAATGAAACA            CCT-CCGCG TTA CGCGACAGG            ACATCGCACAATGGG  59 94
        idnO NONE
HAP49_RS16980 3568506 .. 3568524 -  -2.4  -4.13945   ACTTTTACCCTAAAA             CACCAA TTGCACC TTGGCG             GCCTGGCGCTTGTCG  57 1
        elaB 3568075 .. 3568096 - -15.1   -3.1733   GTCTGCAGAAAAGCA           CGAGGCGGC CTGC GCCGCCCCG            ATGACATGATTTATT  89 36
        menD NONE
        menH NONE
        menB NONE
        menC NONE
        menE 3561876 .. 3561922 - -14.5  -3.03124   GCTGAGCGCCGAAGA GCACCAGCG-CATGTTCACCCGC ATC GCCGGCGAAC-TGTCGCAGGTGC CGGAACAAATTCAGC  78 161
HAP49_RS16940 3559670 .. 3559686 - -10.8  -4.42513   AATGATAAAGAGAAA              GGGGCC GCAAT GGCCCC              TTTTTGCTGAGCGTC  89 39
HAP49_RS16930 3556899 .. 3556909 -  -8.2  -3.60234   GTACAGAGCTGCAAA                 CGCG AGG CGCG                 GCGGCAATACGTCTT  65 104
HAP49_RS16920 3554591 .. 3554607 -  -3.7  -3.41569   TTAGCGAGTGAAACA              CATGC CTTAAGC GCATG              CTTGCCTCCTTGCTG  50 256
HAP49_RS16915 3554199 .. 3554239 - -10.9  -4.28254   CCCCAACAGTGAAAA  CTGCCTGCTCGACGTGCTG GAG CTGCACGACGTGCAGGTGG  AGTACCAATGCCGCT  89 240
        gyrA 3546552 .. 3546575 - -14.6  -4.79756   CATATAACTGAAAAA          GGGCCTAGCA TCGC TGCCAGGCCC           TTTTGTCTCAGTGCA 100 75
        rcsC 3543565 .. 3543588 - -18.2  -3.66654   CAGGTTAACGCCAAA          CAGGCACGGC ATCC GCCGTGCCTG           TTTGCTTTTCAGGCC 100 34
        ompC 3536684 .. 3536701 - -14.1     -6.13   ATAGGCAAAAAAAAA             CGCGGCC CGAA GGCCGCG              CTGTGTCATTCACAC 100 49
HAP49_RS16855 3535832 .. 3535849 -  -8.3  -3.86897   GCCATGTGGCACAAA             CCGGCGG GTTG CTGCCGG              CGCTGGCGCCCTGCC  71 333
HAP49_RS16845 3534720 .. 3534739 -  -3.5  -4.39571   GCCACAAACGGAAAA            CGAGCTG GATCGG CAGCTTG             AGCGCCAGGGGTTGC  67 298
HAP49_RS16835 NONE
        osmE 3532642 .. 3532670 -    -9  -5.07107   TAAACGCTTAAAAAA       TGAAAAGCCCCGC AAAA GCGAGGCTTTT-A        TGTTCGGCTGAAACG 100 44
HAP49_RS16825 NONE
HAP49_RS16820 3532326 .. 3532347 - -13.7  -5.42514   GCATAAAGCAAAAAA           CCGCCAACC TTGC GGCTGGCGG            TTTTTTGGCACTCAT 100 40
HAP49_RS16810 3530701 .. 3530726 - -14.1  -5.67063   TTTATTATAAAAAAA         CAAAACCCCGC CGGA GCGAGGTTTTG          TTATCGCGCGGCGGC 100 304
HAP49_RS16805 NONE
HAP49_RS16800 3529468 .. 3529484 -  -4.4  -3.79747   TCAGGCATCAGGAAA              GGAACA GCGCG CGTTCC              GCCGCACGCCGGGCA  56 1
HAP49_RS16795 NONE
HAP49_RS16790 3528613 .. 3528630 -  -5.5  -2.77899   TTTTTTGATGAAGGA             TGGTAGC GGTC GCTACCG              GTTTTCGATGCCATA  48 20
HAP49_RS16785 3528111 .. 3528124 -  -3.1  -2.54523   TCAGACGTTAACCCA               GCGCGA TCG TCG-GC               TCGTCACACCTTCGG  40 29
HAP49_RS16780 NONE
HAP49_RS16775 NONE
HAP49_RS16770 NONE
HAP49_RS16765 NONE
HAP49_RS16760 NONE
HAP49_RS16755 3523254 .. 3523276 -    -2  -3.40403   TTTTTTTCATCATAA           CAGAGAATTA CAT CATTTCTCTA           TGCCGCAACACCTTC  46 10
HAP49_RS16750 3522826 .. 3522841 -    -9    -5.252   TATCCCCATAAAAAA              GCCATC AATT GATGGC               TTTGATTACTATGTT 100 46
HAP49_RS16745 3522144 .. 3522157 -  -9.5  -5.60993   TCGCCCATAAAAAAA               GCCGC TATT GCGGC                TGTCTGTTCAAACGG 100 47
HAP49_RS16740 3518518 .. 3518531 -  -3.8  -4.84359   TTAGCCTGATAAAAA               CCTC GTTACG GAGG                TGATGATTACTCCAG  72 32
HAP49_RS16735 NONE
HAP49_RS16730 3515471 .. 3515503 -  -9.7  -3.96148   TTGGTGTACGACAAA      CGCAACGTCGCTGGG CTG CCCAACGCCGCCGAG      ATTATTCGCAACGAG  74 350
        ttrB NONE
        ttrC NONE
        ttrA 3507972 .. 3507988 - -12.3  -4.75309   CCAAATTTAAGAAAA              CCTGCTG TTA CAGCAGG              TTTTTTTTCGTCTGC 100 44
        yejK 3504360 .. 3504375 - -11.8  -4.32678   CGCCGAAATAAAGAA              CGCCGC AATT GCGGCG               TTTTTTATTGTCTGC  95 53
        rsuA NONE
HAP49_RS16655 3499624 .. 3499668 -   -12  -4.21439   CAATCCTAATACAAA TCCCCCGCGCGGCTCAGC-CG ACAG CGCGCCGCGCCTCCCGGGGAA TATTGGGCGGCACGG  95 200
HAP49_RS16650 3498867 .. 3498891 -  -7.1  -2.79796   CCGCAGCCGACTATA          CCCGTCAACTG CTG CAGTTAGCGGA          TTAGCGGCGAATTCA  53 38
HAP49_RS16605 3487858 .. 3487887 - -22.3   -3.7941   CAGGGCCGAGAATAA       CCATGCCGGCGTA ACGT TACGCCGGCATGG        CGGAACGACTTAACG 100 35
        uxuA 3484726 .. 3484745 -  -9.2  -4.15222   AGCGCCCGCAACAAA            CCGGCCAC CATG GCGACCGG             CCTGGTGATCCACGT  79 159
HAP49_RS16580 3482105 .. 3482120 -  -4.6  -4.65895   GCCGGTATTGAAAAA              TACCGC GCAC GCGGTG               CCGCAAGGCGCCTGA  70 278
        fruB NONE
        fruK NONE
        fruA 3473776 .. 3473793 - -12.7  -4.61566   GCCCAAACGACAAAA             CCGGAGC CTGG GCTCCGG              TTTTTTTATGGCTGG 100 48
HAP49_RS16535 3471275 .. 3471291 -  -6.6  -3.96216   CCGGTATTGAAAGAA              GGTTCT GCCAG AGAACC              CCAACATGGTGATGT  67 85
HAP49_RS16530 3470371 .. 3470398 -  -2.7  -2.58822   GCGGCGATAGAAGAC        GTGACGCGCTGT CGATT ACAGCACG-CAA        TAGCTGAGAAAACGT  40 13
HAP49_RS16525 3468637 .. 3468679 - -11.3  -4.60924   CAAAGGCGGGAAAAA GTAAAGCCAAACGCGGCGGG AACC CCCGCCGCGTATCACTC-AC CGAAAATTACTTCAC 100 32
HAP49_RS16515 NONE
HAP49_RS16510 3465280 .. 3465296 - -15.1  -5.60993   TGCGCGATAAAAAAA              GCCCGGC GAT GCCGGGC              TTTTTCCTGGATTAA 100 37
HAP49_RS16480 3456813 .. 3456839 - -12.4  -5.86332   TTAATGCAAAAAAAA         TAACCGACGCTT TCA AAACGTCGGCTA         TCTGCATTTGAGATA 100 193
HAP49_RS16475 3455059 .. 3455074 - -11.8  -4.74012   AGCAGAAAAGGAAAA              GGCCGC GAAA GCGGCC               TTTTTTGTGGCTGAG 100 55
HAP49_RS16460 3451671 .. 3451695 -  -8.4  -3.44319   GGTAACGGACGATAA          CCTCGGGCGC CCGTT GCGCCCGGCG          GTTATTTGAAGTCCA  65 27
HAP49_RS16450 3449937 .. 3449962 - -11.9   -4.4078   GCCCGGCAAGGAAAA         GGCGAATGAGG CGTC CCTCATTCGCA          CTCAGGCTCAGGCGG  95 33
HAP49_RS16445 NONE
HAP49_RS16440 3448293 .. 3448320 - -14.2   -2.8294   CAGGCGGGATAAGGA        TGCGGGCCAGGCA AGA CGCCTGGCCCG-A        TAAGGCGGGTTACTT  82 35
HAP49_RS16425 3445038 .. 3445074 - -10.2  -2.98323   AAAAATGCTACAAAT   GCGGATCG-CGATCCCA TTTA CGGAATCGGCGATCCGG    GCAGATCCGCTAAAT  70 35
HAP49_RS16420 3443740 .. 3443753 -  -2.3  -3.06183   GGGAGGGTCAGGGAA               CCAGG ATCA CCTTG                ATGGAGTCGGTCGAG  42 4
HAP49_RS16415 NONE
HAP49_RS16410 NONE
HAP49_RS16405 NONE
HAP49_RS16400 NONE
HAP49_RS16395 NONE
        araD 3436794 .. 3436806 -  -4.7  -3.83998   TCACCTCACAGGAAA                GCGAG GTG CGCGC                CTATCTGGCGCAACC  60 327
HAP49_RS16380 NONE
HAP49_RS16370 3432381 .. 3432428 - -10.4  -3.15583   CGAAGACATGTAACA TGCCGCTCAGGGGCTGAATGGC AACC GCCATCCAGCCCCTGCTTGCCC AGCCGACGTTAACGC  71 34
HAP49_RS16315 3421694 .. 3421711 - -11.3  -2.52464   GCCCTGCCGAACCGA             TGCGCAC CTCA GTGCGCA              GCCGTTGATACTCCA  70 16
HAP49_RS16290 3415492 .. 3415504 -  -7.7  -4.42806   TCACTCGCAAATAAA                TCACG CAA CGTGA                ATTTATCTCGAGTTT  76 188
HAP49_RS16285 3415022 .. 3415035 -  -4.5  -3.74703   AGAAGACGCAAAACA               GCGAT GATA ACCGC                TTATATCGCCACGTT  56 72
HAP49_RS16280 3413578 .. 3413602 -  -7.8  -3.94933   CCAACTGGAAAAAGA         GCGCTGGACCC AGCC GGGTTC-GCGC          GTAGAGCTGGCCGAT  68 501
HAP49_RS16265 NONE
HAP49_RS16260 3410829 .. 3410854 - -20.5  -4.36914   CTCTGGTTGAGAAAA         GCCCGCTCAGG AAGA CCTGAGCGGGC          TTTGTGCTTTTCTGC 100 50
HAP49_RS16250 NONE
HAP49_RS16245 NONE
HAP49_RS16240 3407215 .. 3407227 -  -2.6  -3.87627   TGTTTACATAAAATA                CGGC TTGTC ACCG                TCAGTGCCCGGCTGG  53 1
HAP49_RS16235 3406395 .. 3406420 -    -9  -4.58283   TAATCGGTTTAAAAA         CTCGTACTGC CTCATT GCAGTACGCG          GTGTCGAGGCACTAA  86 37
HAP49_RS16230 NONE
HAP49_RS16225 NONE
HAP49_RS16220 3403505 .. 3403530 - -17.7  -4.45083   GCCATATTTAGAAAA         GCCCGCTTAAG GCAA CTTAAGCGGGC          TTTTTGCTTTTCTGG 100 180
HAP49_RS16210 3401777 .. 3401789 -  -4.7  -2.52795   AAGGCCGCCAACGCA                GTCCG ACG CGGCC                CAAAGGTCATCGCGG  44 102
HAP49_RS16205 NONE
        livM 3399521 .. 3399540 -  -4.9  -4.11216   GTTCCACCCGCAAAA            TGGCGTC GCTCAT GGCGCCA             CCCCCTTGCGTTCGG  61 15
HAP49_RS16195 NONE
HAP49_RS16190 3397916 .. 3397935 -  -9.2  -3.80855   CCGCTGAAAAATGAA            CGCGGGCA TCCC TGCCCGTG             GGGCGGCGCTCAGCC  73 35
HAP49_RS16180 3396210 .. 3396224 - -12.8  -3.59262   CTGGACATGCCCAAA               CGCGCC GAC GGCGCG               CCGGCGGCGGTGCTG  77 274
HAP49_RS16170 3394278 .. 3394315 -  -6.9  -4.33274   TTTATAGCAGGAAAA   TGTAG-CGCGGGATGCCG CAG CGGCATCCCGAATCGGCA   GGTTAACGGCTGTGG  74 28
HAP49_RS16165 3392723 .. 3392740 - -14.1  -3.61398   TTTTTTGCTGAAGAA             GCCGGCG TCGC CGCCGGC              GCAAAACGTCAGATG  89 34
HAP49_RS16160 NONE
HAP49_RS16155 NONE
HAP49_RS16150 3389668 .. 3389703 -  -6.8  -2.80816   CCTGTACTGACTACA    TTCGTC-TTACGGCGGC CGC GCCGCCGAACCGACCAA    AAGCATAGCACCTTC  53 60
HAP49_RS16145 3388455 .. 3388484 - -13.7  -2.71011   AGTGCGTTTTAAGCA       GCGTCCAACAAAC AAGA GTTTGTTGGACGT        TTTCGTTGATAGCTA  78 130
HAP49_RS16100 3374704 .. 3374735 -   -18  -2.72049   GATATCCCTCAAGCA      GCGCCCAGGCGG-CG GAG CGTCCCCCTGGGCGC      TGTTCTTAGCTGTTC 100 31
        hchA 3373722 .. 3373752 - -12.5  -3.53343   AACGCCGTCTGGAAA       GCGCGCTGCGCGA TCTCG TCGCTCATCGCGC       GGCGACGTCGGCCAG  83 17
HAP49_RS16090 3372958 .. 3372991 - -15.9  -3.10344   TGGCCACCGAAGAGA     CCGCGCAGCGCCCCG ATAT CATGGCGCTGCGCGC      GTGGCTGCTGCGGCA  81 53
HAP49_RS16080 3371389 .. 3371411 - -17.7  -3.17075   GGCCGCCTAAGCGAA           GCCCGCCGG GTTTA CCGGCGGGC           TGTTTACCTGCGGCG 100 45
HAP49_RS16060 NONE
HAP49_RS16055 3361881 .. 3361899 -    -3  -3.57144   GTGTTCATGCTCAAA             TCTCCTGC AAT GTGGGAGA             TTTGAGTATGGTCGT  49 193
HAP49_RS16050 3361245 .. 3361262 - -12.7  -2.78384   TCTGCTCCTAGCACA             GGGCTGC TGTT GCAGCCC              TGACAATCTTAGACT  77 34
HAP49_RS16045 3359934 .. 3359950 -  -5.7  -4.07455   TATGAAGAGGAGAAA              GCCCACC TCA GGAAGGC              TTCTCGCTCAACATA  66 178
HAP49_RS16035 3357992 .. 3358002 -  -2.4  -3.13522   AGCGCTGCAGGAAGA                 GCTG AAA CGGC                 ATACGGAGACGGGAT  42 76
HAP49_RS16030 NONE
HAP49_RS16025 3356549 .. 3356559 -  -6.8  -3.21099   TCTCCTTATCATTAA                 GCCA GGG TGGC                 GTTATCCGAATGGCA  58 11
HAP49_RS16020 NONE
HAP49_RS16015 3354359 .. 3354381 -  -7.7  -3.86346   GCACTTGGGGAGAAA           GTCCGCTAT GAGCG AGAGCGGAC           ATCAAAGTATTAAAG  69 132
HAP49_RS16005 3352350 .. 3352375 - -20.5  -3.53722   GCCATATTTAGAGAA         GCCCGCTCAGG GAAA CCTGAGCGGGC          TTTTTGCTGTTGGGC 100 83
        citC NONE
        citD NONE
        citE NONE
        citF NONE
        citX NONE
        citG NONE
HAP49_RS15955 3341220 .. 3341259 - -15.1  -4.13767   GGGTTCACGGGAAAA GATCGTACCAGCGGCCGCC GGGC GGCGGCCGCT-GTGCG-TC  AACTCAGTACCACAG 100 29
         agp 3339853 .. 3339880 - -14.9  -3.06569   CGAAGTGGGGAAAAT        GCCTCTCCCCC GCATTG GGGAGAGAGGC         TGGGCATTACAAGAT  89 32
HAP49_RS15945 3339009 .. 3339021 -  -4.9  -4.46112   CGGCACGGAAAGAAA                TAACA CAT TGTTA                TTATTGTATTTTAGC  68 36
HAP49_RS15940 3337625 .. 3337643 - -11.7  -2.75838   GCGAAAAGCATATGA             TGCGGCG TGCTG CGCCGCA             AAGTGGCCCTACAGC  74 34
        dhbA 3336301 .. 3336318 -  -4.1  -3.33744   CGCTGCTGCAAAAAC             TGGCG GTGGCATG CGCCA              TGGTGGGGGTGGGCA  48 500
        alkB 3334714 .. 3334763 - -14.2   -2.7924   GATGAGAATAGACCA TCTGCTGTGCGCCACGCCGCAC TACCTG GCGCAGCACGGCACACCGCAGC ATCCGCACGATCTGG  75 388
HAP49_RS15915 3333305 .. 3333321 -  -7.9  -4.18018   GCGTTTCAGTCAAAA              GTGCCCG AGC CGCGCAC              CGAACAGGCGCGTGC  72 196
HAP49_RS15905 NONE
HAP49_RS15900 NONE
HAP49_RS15895 NONE
HAP49_RS15890 NONE
HAP49_RS15885 NONE
HAP49_RS15880 3325719 .. 3325758 -  -2.6  -4.07885   GATCCCCTGCCAAAA  GCGCCGACGCCAGATGTCC GGC GGATCCCGGGCGGCAGC-C  GACAATGCCGCCGCC  55 57
        ssuD NONE
HAP49_RS15865 3320897 .. 3320929 -  -2.5  -2.83271   CGAGCTCCACAATTA     TCTGCCGGCCACGG ACGGAG CCG-GGCCGGATGG      GGGGTCTTAGGGTGT  39 60
HAP49_RS15860 NONE
HAP49_RS15855 NONE
HAP49_RS15850 NONE
HAP49_RS15845 3316814 .. 3316839 - -16.3  -2.85354   CAGCGTAACGGAAAC         GCCGGATTAAC ACGC GTTAATCCGGC          CTTTATCACGGCCAT  91 53
HAP49_RS15840 NONE
HAP49_RS15835 3313877 .. 3313895 -  -8.1  -2.70932   CGGCGCCGGCAACCA            GCGCGGCG AGAT CGCC-CGC             GATCCGCGCAACCCG  54 148
HAP49_RS15825 NONE
HAP49_RS15820 3311674 .. 3311690 - -15.1  -5.24129   TCGCCGCATAAAAAA              GGCCCGC CAA GCGGGCC              TGCGAGAAAGCGGGC 100 43
HAP49_RS15815 3310849 .. 3310871 -    -9  -2.62515   AACGCGGCGAGAGCA           GCCCGACGGC GAT GCTGTTGGGC           AGACTGGCGGGGGCG  56 438
HAP49_RS15805 NONE
HAP49_RS15800 3309640 .. 3309665 - -18.3  -3.57797   GCCAAATTTAGAGAA         GCCCGCTCAGG GAAA CCCGAGCGGGC          TTTTTGCCTTTCAGC 100 46
HAP49_RS15790 3309214 .. 3309235 -  -2.9  -2.64472   GACGTCTGAAATTCA           TAGTGCCTC CAGC GAGCCGCTA            AATTGAGAATGCCGA  40 56
         nac 3308087 .. 3308097 -  -4.6  -3.85698   TGCGTCTCCGACAAA                 CCGC TGC ACGG                 CGAGATCAAACTGCC  60 219
HAP49_RS15770 3303173 .. 3303193 -  -7.6  -4.18488   ACCGAGCTGAACAAA           CAGGCGTGG CAAG CCA-GCCTG            CCGCTGTTCGCCCGC  72 155
HAP49_RS15745 NONE
HAP49_RS15740 3298041 .. 3298064 - -12.4  -5.24129   TGCGGGTATAAAAAA          GCCCGCCGAT AATC ACCGACGGGC           CAGGAAGGAACGGCC 100 42
HAP49_RS15735 3296983 .. 3296996 -  -3.1  -2.61216   TTACCAATCAATTTA               CGC-CA AAT TGCGCG               CATGAAAGCGTTCGC  40 9
         gap 3295848 .. 3295873 - -17.7  -3.53722   GCCATATTTAGAGAA         GCCCGCTTAAG GAAA CTTAAGCGGGC          TTTTTGCTGTTGGGC 100 43
HAP49_RS15715 3294468 .. 3294488 -  -5.3  -2.64616   TTGGCATGCATAGCA            CTGGGCTTG CCG CAAGCGCCG            CACCGGGTTCAAGCG  47 216
HAP49_RS15710 NONE
HAP49_RS15705 3292235 .. 3292252 -  -5.5  -3.35597   GTCACTCGGGAAATA             CGGCG CTGGCTTT CGCCG              GAACGGACTACGCGG  54 33
HAP49_RS15700 3291427 .. 3291437 -  -2.4  -4.86001   ATGAGGGTAGAAAAA                 GAGG AAG CCAC                 TGCGGGGTCAGACTG  68 96
HAP49_RS15695 3290227 .. 3290249 -  -9.2  -3.41878   CCGTGCAATCCATAA           GGAGGTTC CTGATGT GAACCTCC           TTTTTGCTCGCTTAA  69 37
HAP49_RS15685 NONE
        tssB NONE
        tssC 3285017 .. 3285027 -    -4  -3.74519   AACAGCGCCACTAAA                 TTTC AAT GAAA                 TATCAATTCCCACCA  54 94
HAP49_RS15670 3284277 .. 3284316 -   -10  -2.57683   ACACCTCGCGATAAG  GCTTA-TGTCTGCCCGCAA TCG CTGCGGGCAGACAGCCTGC  AATTAGTGTTGTGAC  65 49
HAP49_RS15665 NONE
        tssF NONE
        tssG NONE
        tssH 3278298 .. 3278323 -  -8.1  -3.12999   TGATCCGATATCGAA         CCCCGCCCCGC GTTT ACGGGCCGGCG          GCAAATTAAAAATCA  62 38
        vgrG NONE
HAP49_RS15640 NONE
HAP49_RS15635 NONE
HAP49_RS15630 NONE
HAP49_RS15625 NONE
HAP49_RS15620 NONE
        tssK NONE
HAP49_RS15610 NONE
        tssM NONE
HAP49_RS15600 3264324 .. 3264347 -  -8.8  -3.01924   CACTCCTTGTGAATA          CCAGGAGGCA TTTC CACCTCCCGG           TATTTTATCCATCGA  63 49
HAP49_RS15590 3262824 .. 3262852 -  -7.3   -4.5954   GGAGAGCATACAAAA        GCAAGACGCGGTA AGC TGCCGCGCTTCGC        AAGGGAAATTGTTAT  82 514
HAP49_RS15585 3262005 .. 3262046 -  -2.9  -4.03104   GAAATCAATAAAAGA TGACCGCT-CAGCGCCGT TGATAAT ACGGCGCCGGACCGTTCG CTTCCTTTCCCTGAT  56 40
HAP49_RS15580 NONE
HAP49_RS15575 NONE
HAP49_RS15570 3254442 .. 3254455 -  -5.2  -2.55061   ACAATGTCAGAACAG               GCCG AACTCA CGGC                AGAGATAATCGGCAA  47 3
HAP49_RS15565 3254033 .. 3254048 - -10.4  -4.18197   ATGTGCGAGGTAAAA              GTGCCC TTGC GGGCAC               TTTTCATTAAGGGCC  88 45
HAP49_RS15560 NONE
HAP49_RS15555 3251938 .. 3251985 - -13.7  -4.12188   TCACTATTTCTAAAA TAAGGCAGCAATGCGCTCTGTC GCGCA GA-ATAACGCATTGCCGCCTTA TTGTTTTTCGGCGCC  93 46
HAP49_RS15550 3250794 .. 3250814 -   -14  -3.10344   CTCCGAGGCAATACA            GCCCGCTG TGAAC CAGCGGGC            AAGAAAATATTATCA  86 38
HAP49_RS15545 NONE
HAP49_RS15540 NONE
HAP49_RS15535 3246426 .. 3246451 -  -4.1  -3.16564   GCCTGATGCCACCAA         TAATGTCGC GCGAACAG ACGACATTA          TATTTTTAATGGGGG  46 46
HAP49_RS15530 3245935 .. 3245956 - -17.3  -2.88544   CCTGACCGGGAGACA           GCCGCAGCG AGAA CGCTGCGGC            TTTGGACCGCATATG 100 44
HAP49_RS15525 NONE
HAP49_RS15520 NONE
HAP49_RS15515 NONE
        gspS 3241604 .. 3241620 -  -8.1  -3.96705   TGGATAAAAGTGAAA              CATCATT TCA AATGATG              AGCGATAAATCGTTA  74 97
HAP49_RS15505 3239807 .. 3239847 -    -6  -4.08064   AAGCGGCGGTGAAAA CGC-GACG-CGCCGGCCTGA CGT TCGCGCCGGCGTCGCCAGCC ACGTCGCCCTTTATC  65 322
HAP49_RS15480 3233064 .. 3233097 -  -8.2  -2.92667   TCAACGTGGAAATCA     CCGTCGACAATAGTC TGGCC GAC-ATCGTCGCCGG     GCGTTTCGACGCCGG  55 500
HAP49_RS15470 3231914 .. 3231936 -  -8.3  -2.75992   CCTGAGCGAACACTA           CGGCGACAG CACGC CCGGCGCCG           CCATTTTCATTCCGA  54 202
HAP49_RS15450 3229280 .. 3229297 - -14.1  -4.54727   GCGCTGAAATGAAAA             GCCCCGC TGCG GCGGGGC              TGGATCGGAAATTAC 100 37
HAP49_RS15435 3226645 .. 3226669 -   -10   -3.0497   ACATTATTGTCAAGA         CGGGCGCATCA GCAA TG-CGCGCCCG          GTAAAATAAAACCTG  68 81
HAP49_RS15430 NONE
HAP49_RS15425 3225407 .. 3225423 -    -3  -4.26832   TAAGAAGAAATTAAA             TCAGGCG ATGG CGC-TGA              CGGTAATTTCTATTT  59 9
HAP49_RS15420 NONE
HAP49_RS15415 3222443 .. 3222464 -    -8  -3.30771   GGAGATCGGCGAGAA           CACCATCG TCGGCG CGATGGCG            TTCGTCAAAGCCGCG  58 304
        paaZ 3208959 .. 3208972 -  -8.1  -3.03635   GAAAGTGCTGGAACA               GCTGC GCGG GCAGC                CGCTGATCTGAATGG  62 80
HAP49_RS15330 3205183 .. 3205205 -   -12  -2.58272   TACACTAGTAAGTCA           CCGACGGCAA TTA TTGCCGCCAG           CAATCATTTCGTCCG  73 523
HAP49_RS15315 NONE
HAP49_RS15310 3203047 .. 3203064 - -10.5   -4.7373   TGATTTCACGAAAAA             GGGCCGC CGCG GCGACCC              TGTTGAGCAACGGCT 100 43
HAP49_RS15305 3202563 .. 3202587 - -12.8  -3.07291   AATTAGCGGAGTGAA          TGCTCCCGGC CAGAC GCCGGGAGCC          TAATCATTATTTGAA  79 32
HAP49_RS15295 3200289 .. 3200312 -   -11  -3.85817   AGCGTGGCGGACAAA          GCGCAGATTG CCGC CGATCTGCGC           GAAAAGGTTTGGCCG  79 208
        cspE 3197561 .. 3197574 -  -9.5  -5.64274   GCAGGCATAAAAAAA               CCCGC CGCA GCGGG                TTCTTTTCAATCAGC 100 53
        dsrB 3196955 .. 3196990 -    -9  -5.71983   GGAACCACAAAAAAA    TACCTGTTGCGTTATC CCCC GCTAGCGCAACGGGTA     TTTTTTTGCCGTCGA 100 116
HAP49_RS15260 3194445 .. 3194466 -  -3.7  -2.74144   GGCTGACGCTGAAAG           CCTATGGCCG CAG CGG-CATACG           GGATATCGTCGAGCG  42 355
HAP49_RS15250 3191897 .. 3191912 -  -7.5  -3.72695   ATGGCGCGGAGGAAA              GGCGC GCGCTG GCGCC               GGGCCTGATAGACGT  65 503
HAP49_RS15235 3189495 .. 3189531 -  -6.6  -2.72379   GGAATTTTTTAATTA   GCGTGACTGAATAGCGT GATT ACCCTGT-CAGCCACGC    AAAAATCATTTCCCT  53 146
        mgtA 3186696 .. 3186723 -  -8.4  -3.17075   CGCCCCCGAAGTGAA        CGCCGAGGCGGCT TAC AGCCAC-TCGCCG        AAGCGGCGGATATAG  62 10
HAP49_RS15205 NONE
HAP49_RS15200 NONE
        arsC 3181143 .. 3181190 - -14.1  -3.15544   CGGCATTCGCATCAA CGCGACGGC-GCCG-GGCGGCAC CGAA GCACCGCCGCGGCTGACGCCACG CAACCGCGAATCCCC  76 242
HAP49_RS15135 3170328 .. 3170344 - -10.9  -3.52113   ACTGGTGCAGAAATA              CCTGCAT GAC ATGCAGG              GCTGGAACTCGCTCA  71 428
HAP49_RS15115 NONE
HAP49_RS15110 3166291 .. 3166316 -  -6.2  -4.66609   TAGCGGACGGAAAAA         TCTGGGGTTCC GGCGT AGAACCCC-GA         ATAAGGAATAATCCT  76 40
        umuD NONE
        umuC 3163844 .. 3163855 -  -7.2  -3.30441   CATCACCCCCGATAA                GCCG GACC CGGC                 AGCGGTGAAGTAACG  61 66
HAP49_RS15090 3160542 .. 3160568 -  -3.5   -4.4891   CCGACGAGCAGAAAA         TCCCTTCGGCG CTGAT CGCCGATGCGC         TGCGCGTTCTGCACA  67 58
HAP49_RS15080 3157841 .. 3157860 - -13.6  -4.11216   GTGTGAGGGGTAAAA            TGAGGGGG CCAG CCCCCTCA             TGCCGTTACAGGTCA  93 31
        kynA NONE
        sbmC 3152221 .. 3152256 - -17.6  -3.54424   TGGTACGCCGGGAAA    GCCGGTTAACGCCGCCC CCC GGGCGGCAGT-ACCGGC    AAAAACGCCGTCCGC 100 158
         pcp 3112537 .. 3112550 -  -9.5  -2.52464   TCTGCTTTTAATGTA               CGGCG CCGT CGCCG                AATCGCACATCTTCC  64 4
        flhD NONE
        flhC 3108165 .. 3108178 -  -9.5  -3.54459   GGAAGGTGGGGCAAA               CGCGC CCTG GCGCG                ACAGACCAGGCTGCA  74 114
        motA NONE
        motB NONE
        cheA NONE
        cheW 3103607 .. 3103624 - -14.1  -2.80236   AAGTGAAGGTTAAAG             GGGGCGG CGCC CCGCCCC              TTGAGTCTGAAATCA  82 38
HAP49_RS14830 3101743 .. 3101763 - -12.6  -4.19817   CCTACGTAGGGAAAA            GGGCCTCT GCGAG AGAGGCCC            GATACCGGTCAGAAC 100 34
HAP49_RS14825 NONE
        cheR NONE
HAP49_RS14815 3098057 .. 3098084 -  -6.3  -3.12595   TTTAATGATGCAACA       CCGCAGGC-CGCC GCAC GGCGAACCTG-GG        TCATATCGCCGCCGG  53 61
        cheY NONE
        cheZ 3096970 .. 3096986 - -10.1  -2.71712   CGCGCGCCCCGAAAG              GCCTCAG AAA CCGAGGC              TGTCGAGCAGATCGT  65 12
        flhB NONE
        flhA NONE
HAP49_RS14790 3092909 .. 3092923 -  -4.2  -3.22298   TCGATCCACCAGGAA               GTTCAG GGC CTGCAC               CGCGCCGGTTTCGTC  47 283
        flgB NONE
        flgC NONE
        flgD NONE
        flgE NONE
HAP49_RS14740 3086961 .. 3086972 -  -4.4  -2.64912   TTGGCAATCCATAAG                GATG GAAT CATC                 GGTTATTTCCTTGCT  44 43
        flgG 3086153 .. 3086180 -   -17  -3.86252   TTTCACGAAAGAGAA        TGACGGGCGCGG CATG CCGGGCCCGTCA         AGGACAGATTACAGT 100 34
        flgH NONE
HAP49_RS14725 NONE
        flgJ 3083260 .. 3083299 -  -9.3  -5.52986   ACTTGAGGAAAAAAA  GCGGCAATG-CGGTCAGC ATCCA GCGAACCTCCATTGCCGC  CTATCCCCTAAATAA 100 75
        flgK NONE
        flgL 3080323 .. 3080364 - -11.6  -5.72616   ACGCAGACAAAAAAA GGCGCGTCGCTCAGTC AGTAGTGGGA GAACGAACGACGCGCC  AAACGAGTGCGCCCG 100 135
        fliE 3067223 .. 3067252 -  -9.9  -2.90723   TGACCTTCAACTATA       CCGCCACCTACCC GGTG GGGTTGGTGGAAG        GCGTCAATGCGCTGG  61 480
HAP49_RS14625 3065784 .. 3065801 -  -5.5  -2.62616   CTATTCGGTACATTA             GTCGGTT GTGG AACCGGC              CATTAGCGATGCGAT  47 28
HAP49_RS14600 3060576 .. 3060591 - -11.8  -5.67063   GCGAGCATAAAAAAA              CCCCGC CGAA GCGGGG               TTTCTTTGCGACAGT 100 57
HAP49_RS14595 NONE
        fliZ 3059128 .. 3059147 - -16.4  -2.97021   GGGGGAAACAGCAGA            CCCCGGCC CAGC GGCCGGGG             AAAGTCTCAGTAGCT  95 32
HAP49_RS14585 3058029 .. 3058047 -  -6.7  -3.48479   CAAAATGGAATAACA            CGC-GGTG TTTA CACCTGCG             GATGGTAGGCGAACA  60 15
        tcyJ NONE
        tcyL NONE
        yecC 3055679 .. 3055699 -   -14  -2.56273   AGCAGAGTGAATTCA            GTCGGGGG AAACA CCCCCGAC            GCCTTATTGATTCCG  81 29
        putP 3048810 .. 3048834 - -11.4  -4.77986   GCAAACAGGCAAAAA          GAAGGGGCGC TCTGC GCGCCCCTTG          CCGACTGACATCAAA 100 46
HAP49_RS14545 NONE
HAP49_RS14540 NONE
        efeB 3045266 .. 3045287 - -13.7  -4.42081   AAGACAAACGTAAAA           CGAGGCGGA AGAT CCCGCCTCG            TTATTCCGGTTTCAG 100 37
        phoH 3043757 .. 3043772 - -11.8  -5.24129   GGCGGCGATAAAAAA              GGCCGC CGAA GCGGCC               TTTCCATTAGCGGAT 100 44
        lpxO 3042624 .. 3042644 - -18.3  -4.72272   TCGCCTGATCAAAAA            GGGGCGCAC TCT GTGCGCCCC            TGCCTGCGTTATACC 100 34
        chaB 3039886 .. 3039900 -    -5  -3.20901   ATTTTATTAATTCAA               TAACCG CGC CGATTA               ATAATGACCATATTC  53 168
HAP49_RS14505 3039048 .. 3039067 - -13.6  -4.41353   TTAGATATATGAAAA            GGGCTCAG CATG CTGAGCCC             TTCAGTGTCTGCTGC 100 53
         cbl 3037809 .. 3037835 -  -7.9  -3.36327   GCAGGCGATGCAGAA         TGCGCGGCAGG AATTG CCTGCCGCTTA         TCGGTTAAATCTGAT  62 30
HAP49_RS14495 NONE
HAP49_RS14490 NONE
HAP49_RS14485 NONE
HAP49_RS14480 NONE
HAP49_RS14475 3032644 .. 3032674 -  -3.1  -2.50195   ATTTATTACCAAGAT       GGATATGCCCGCC GCGTT GGCGGGCACAGGT       TTAAATGCTGATGCG  40 26
HAP49_RS14470 3030799 .. 3030813 -  -7.8  -3.53091   ACGGCCGCGGTGAAA               GGCGTC AAC AACGCC               GCCTTTCAGTGCCAA  64 180
HAP49_RS14465 3028672 .. 3028691 -  -6.3  -2.78384   CCTGCCGGCAGCACA            CCGGCTG TGGTTG CCGCCGG             CTGCGGCGCTGCTGA  49 471
HAP49_RS14455 3026165 .. 3026196 - -12.2  -2.79209   CAACCATGAAGACGA      CGTCGTCAGCGCGC TCAA ACGCGGTGCCGACG       GTTATTTGTTGAAAG  66 360
HAP49_RS14440 3022304 .. 3022324 - -12.6  -3.66117   GGAATGAGAGAAATA            TCCCTCCC CTGGC GGGAGGGA            TTGAGAAAGCAGTTT  85 46
HAP49_RS14435 3020612 .. 3020634 -  -4.3  -4.56978   CTTTCAAATAACAAA           TAATGAAAT AAAAG ATTTCATCA           AATGTAAAATTATCG  68 65
HAP49_RS14430 3019478 .. 3019489 -  -2.2  -3.91506   TTATCCTGAAAAATA                CAGA TTTA TCCG                 CTTGTCGGCGGAATA  53 68
        wecA 3018281 .. 3018300 - -11.4  -3.88559   AAGTACCGTGATAAA            CGGACTGC TGCC GCAGCCCG             TGAGAGGATTAACGC  84 34
HAP49_RS14420 NONE
HAP49_RS14415 NONE
HAP49_RS14410 NONE
HAP49_RS14405 NONE
HAP49_RS14400 NONE
HAP49_RS14395 NONE
HAP49_RS14390 NONE
HAP49_RS14385 NONE
HAP49_RS14380 3006875 .. 3006900 -   -12  -3.87373   CAGACTGTTGACAAA         GGGGGAAAAA GCGTGG TTTTTCCCCC          TTTGTGGTGAGCGGC  86 166
HAP49_RS14375 NONE
        narH NONE
        narJ NONE
        narI 2999847 .. 2999875 -   -13  -3.08015   GGAATTATCGGAATA        GCGCCGCCGCTG GCGAT CGGCGGCGGCGG        GGTCAGGCTCAGCGG  79 34
HAP49_RS14355 NONE
HAP49_RS14350 NONE
HAP49_RS14345 2996787 .. 2996801 -  -5.6  -2.50307   CAAAGGGTCATGAAC               GGGATC ACA GGTCCC               CCTCGTGGCACAGCA  47 15
HAP49_RS14340 NONE
HAP49_RS14335 NONE
HAP49_RS14330 NONE
HAP49_RS14325 2992679 .. 2992699 -  -5.3  -2.54523   CGATAGGCTAACGGA            CGCAGCGGT TTC ACGGCTGCC            CCATAAGGCGCAAGA  47 15
HAP49_RS14320 2991605 .. 2991621 -  -3.6   -3.0701   ATAACCCGCATGCAA              CGCTAG TGCGG CTTGCG              CCCCATCGCGCTGAG  46 11
HAP49_RS14315 NONE
HAP49_RS14310 2990864 .. 2990875 -  -7.2  -4.68724   CTATGCAAGATAAAA                CGGC AGCC GCCG                 CTCCGGCGCCCTGGT  86 163
HAP49_RS14290 2986740 .. 2986758 -  -2.4  -4.83169   ACCCGTTGATAAAAA             TGTGACAA AAT TTATCGCA             GAGTAATGGGCGGCT  68 130
HAP49_RS14285 NONE
HAP49_RS14280 NONE
HAP49_RS14275 NONE
HAP49_RS14270 NONE
HAP49_RS14265 2980837 .. 2980866 -  -8.5  -3.29144   CTATGCGCCCGATAA       GGCGCAGCGCAAA GAGA TCTACGCCTCGCC        GCTCAACGCCACGCC  60 278
HAP49_RS14255 2978231 .. 2978254 - -15.3  -2.71011   ACCTCTTCTGAATCA          GGCTGCGCC GGTGAA GGCGCAGCC           CGCTGATTAGCTGCA  83 32
        astA 2977161 .. 2977179 -  -7.4  -3.19824   CCATTAACCAACAGA             GCAGGATG GGA CATCATGC             TTTCTCCTGTGCAAT  61 20
        astD NONE
        astB NONE
        astE 2973282 .. 2973306 - -12.1  -3.93148   TAATGAAAGGAATAA          CGGCGGCGC GCTGACG GCGCCACCG          TGGATAAATCAATAC  86 34
HAP49_RS14230 2971600 .. 2971619 -   -15  -4.77173   TCCCGATAAAACAAA            GGCAGGGC TTGC GCCCTGCC             TGATTACCAATCCCG 100 70
        lysM 2970332 .. 2970350 - -11.7  -6.09133   GAGGGCAAAAAAAAA             GCCCGGT ACGTG ACCGGGC             CAGGGTAGACCGACG 100 43
HAP49_RS14210 NONE
HAP49_RS14205 2969716 .. 2969730 -  -3.5  -2.92175   GCTTAACACAGGACA               GCTCC TCCGC AGAGC               GGCGACGTGCAGGCA  45 53
HAP49_RS14200 2968363 .. 2968376 -  -9.5  -5.71712   GCGGAGATAAAAAAA               CCCGC CGAA GCGGG                TTTATGCAGGAGTCA 100 360
HAP49_RS14195 2967900 .. 2967939 -  -2.7   -4.7497   GTCATTCACCAAAAA  TCCGCCTGAAGCCCGCCG CAAGT CGGCGGG-TTAACGCGCC  CCCCAGACCGCCAGC  70 16
HAP49_RS14180 2966399 .. 2966448 - -14.1  -3.14211   ACGGTGGTGGATTAA CCGCCACCG-CCCGACGCCGCCGC TTT GCGGCGGCCCCGCCTCAGTTGCGG GTAAACTTCATCTCG  86 16
        mgrB 2965807 .. 2965823 -  -3.5  -3.05844   GCCGCCATCTTAACA              CTCGCGG CGG CCGTGCG              AACATCCCTGCCAAA  46 47
HAP49_RS14165 2965201 .. 2965224 -  -5.8  -3.72576   TGTCGCTGGATGAAA          CGCGCATGCA ACAA CGCGAGCGCG           ATTACACCCATTACG  60 289
HAP49_RS14155 NONE
HAP49_RS14150 2964193 .. 2964219 -  -7.9  -3.54743   GAGCATCAAGGAGAA        GCGCCCCGAGAC GGCA GGC-CGGAGCGC         GATTTTTTTACCGCG  64 63
HAP49_RS14145 2962686 .. 2962716 - -20.4  -3.40403   CGCGGCTGACGAGAA       GAGCGCGGAGGCGC AAT ACGCCTCCGCGCGC       AGATTAACGCTTGGC 100 29
HAP49_RS14135 2961061 .. 2961089 -  -4.6  -4.17491   ATTAAATCCTGAAAA       TACGGG-GGTTAT TTGA ATCACCACCCGCA        CTTATCAATTCTGCT  63 71
HAP49_RS14125 2960325 .. 2960336 -  -7.2  -2.73124   TTGGATTGTTTAAAC                CGCC CGAG GGCG                 TTACATAGACAAACT  56 26
        cspE 2960047 .. 2960064 -  -9.8  -5.00138   GACGGAAACGAAAAA             GCCCGC GCGAAG GCGGGC              TTTTTGTACAGCTGA 100 47
        rlmA 2958296 .. 2958309 -  -8.1  -5.81032   GAACTGCAAAAAAAA               CCTGC CGCG GCAGG                TTTTTTTGTTTCTGA 100 53
HAP49_RS14080 2951964 .. 2951987 - -19.6  -3.50486   AAACAGAAGAGAATA          CGCCGGAGGC CTGA GCCTCCGGCG           GGTGGGTTACGAATG 100 32
HAP49_RS14055 2944805 .. 2944816 -  -7.2  -2.87963   GGGAGAAGGAGTATA                CGCG CTAA CGCG                 GCGGATCCCAACGTC  57 48
HAP49_RS14050 2944465 .. 2944491 -  -6.5  -4.02051   GAGCAAGCGAAACAA        GCCGCCG-CCGC CGTG ACGGTCAACGGC         TGATACTCACGGGGC  69 63
        cspC 2942826 .. 2942840 - -12.8  -5.60993   GCGGGCATAAAAAAA               CCCGCC GGC GGCGGG               TTTCTTGGCGGCTCA 100 45
        dbpA 2941298 .. 2941323 -  -8.9  -2.87444   GTATAAATAGATAAT         GGCGGGAGGGCA AAC CGCCG-CCCGCC         TTCGGCTTATTTCAG  63 32
HAP49_RS14030 2940904 .. 2940927 -  -2.4  -2.56271   TTTTCATCACAACAC          CGCAACATAA GTCA TTATGCCGCT           TGCTTTTCTGACGCA  39 16
HAP49_RS14025 2940553 .. 2940587 -  -2.1  -3.21276   CCCTGGCTCACAACA    GGGTTTCGGCAAAGGG TTTA CCGTTTGACGAA-CTC     GATGACAAACAGCGA  44 8
HAP49_RS14020 2940101 .. 2940118 - -14.1  -3.25823   GTCTGGGGACATCAA             GCCCGCC GCCA GGCGGGC              TTTTTATTGCCAAAA  86 46
        rimJ NONE
HAP49_RS13985 NONE
HAP49_RS13980 2932815 .. 2932832 - -12.7  -3.46285   TACCGTAAATATCAA             CGCCTGC AACA GCAGGCG              TCAGTGAAACAATCG  82 83
        murJ 2931210 .. 2931225 - -10.4  -4.98531   CGCGGAAAGTAAAAA              GGTCGC CAAG GCGACC               TTTTTTTGTTCTTGC 100 48
HAP49_RS13965 2927905 .. 2927931 -  -8.1  -3.48276   GCTGCCGGTAGATAA        CCCGCATCAGTTC TTC GAAC-G-TGCGGG        CGTTGGGTTAAGCGC  63 152
        cutC 2925941 .. 2925961 - -16.1  -5.60993   CGCGGCATAAAAAAA            GCCCCGGCA AAA CGCCGGGGC            CTGGTACTTGCGTGA 100 117
HAP49_RS13945 NONE
HAP49_RS13940 2920919 .. 2920933 -  -8.6  -4.63527   GTATCAGTTGAAAAA               TCAGCT GGT AGCTGA               AGGCGAACTGGTGCT  86 378
HAP49_RS13910 2916988 .. 2916998 -  -2.4  -2.87564   CTATCCTTTTACACA                 GCCG ATG CCGC                 GCCGGGCTACTGCGC  41 71
        aspS NONE
        nudB NONE
HAP49_RS13895 NONE
        ruvC 2913357 .. 2913376 - -12.2   -5.5208   TTATAACATAAAAAA            GGCTGGAT GAAT ATCCAGCC             TGAGCAATCATCGTT 100 46
        ruvA NONE
        ruvB 2911605 .. 2911622 - -14.1  -3.46602   GCCGGGATATGACAA             GGGCCGC ATCT GCGGCCC              TTTCTTATTGGCGGA  88 49
        znuA NONE
        mepM 2907616 .. 2907641 - -11.1  -3.87627   CGCCCAGATAAAACA         GCATCGGCCCG CAAT CAGGCCGATGA          AATTAACGGCGCCGA  84 61
        lpxM 2906515 .. 2906542 - -15.5  -3.09785   GCACATCTGAAGAGA        CGCCGGCCGGG TTGTGG CCCTGCCGGCG         TTAGCGGTAGAAAGG  93 42
         zwf 2901086 .. 2901106 -   -14  -5.81412   CGCAGGCAAAAAAAA            GCCGGCAG ACAGG CTGCCGGC            ATTACGCATTATTCG 100 34
HAP49_RS13830 2900246 .. 2900266 - -11.2  -5.56112   ATAAAAATTAAAAAA            GGCTCAAC AAAGG GTTGAGCC            TTGCGATATCCGCGG 100 78
        mdtJ NONE
        mdtI 2899043 .. 2899064 - -13.7  -5.90981   GCAGACGAAAAAAAA           CCGCAGACG GCAA CGCCTGCGG            TTTTTTATTGCCCGC 100 43
HAP49_RS13810 2896585 .. 2896607 -  -4.8  -2.87132   TGGGTTTTTCATACA          GGGC-GCGC ATTGTA GCACAGCCC           CGTAAGCCCTTCATC  47 43
        tsaB 2895837 .. 2895854 - -12.7  -2.91036   CATCAGCACAATAAC             GCCGCGA TTAC TCGCGGC              CCGGCAGTTTTTTCC  78 15
HAP49_RS13800 2895106 .. 2895123 - -14.1  -5.42198   TCCCAAAAAACAAAA             GGGCGGC CTGA GCCGCCC              TGTCAAATGTGTTCA 100 54
        fadD 2893201 .. 2893230 - -18.7  -3.42395   TGTAGGATTCAAACA       CAACAACGCCGGC ATTC ACCGGCGTTGTTG        ATAGTCAGGCGCGAG 100 49
         rnd 2891828 .. 2891858 - -15.6  -3.18383   ATTGCGACGCATTAA       TTACCCCCTGTATA TTT TATGCAGGGGGTAA       CTGTATGTGCATCCA  95 218
HAP49_RS13770 NONE
HAP49_RS13765 NONE
HAP49_RS13760 2887797 .. 2887827 - -13.2  -3.21993   AGCCACAAGATGCAA       GCTTTGCCGCCGAC GAT GCCGGCGGCAAGGA       GAAATCAGATCACCC  83 30
HAP49_RS13755 2887181 .. 2887217 - -13.8  -3.68222   GCGTAAGCTCAATAA   CCAAGAGGGCGGAATGT CTTA ACACGCCGCCCTCT-GG    CATTAAAACTCGTGT  90 71
        fadR 2882465 .. 2882482 - -14.1   -4.1021   CGCCACAACGACAAA             GGGCGCC GCAT GGCGCCC              TTTCTTATTTCATTG 100 49
        zinT 2879924 .. 2879939 -  -8.2   -3.4252   TTTGACTGAGCACAA              GCCCAC ACAG GCGGGC               TTGTGGTTGCGGGAA  65 50
HAP49_RS13715 2877761 .. 2877775 -  -7.1  -3.28537   AGAGTCAACGATTAA               CGTGC GGGAT GCACG               TCGTTCAGCGGAACC  58 7
        dadX 2876590 .. 2876615 -  -8.9  -4.50976   GGGCAGATCAGAAAA         GTCGCCTGAGC CCCG GCTCAGGCTTC          GATGGCGACCGGCAC  86 17
HAP49_RS13695 2874098 .. 2874123 -  -3.9  -2.57211   ATGGCGGTCTACAAC         GTCTGCGTTCGG CAC CCGATCG-AGGC         CCCGCTGCTGTCGCT  41 371
HAP49_RS13685 2873286 .. 2873306 -  -6.8  -5.24129   GCGTGGGATAAAAAA            GTGCCAGC GCAAG GCTGGCAT            GAAAACGGGAAGCAA 100 178
HAP49_RS13675 2871308 .. 2871336 -  -5.3  -4.62984   CCAGGAGATAGAAAA       GCAGCCCGATGA TTATTT TCAGC-GGCTGC        ATCGCGCGGCAATAG  74 191
HAP49_RS13655 2866226 .. 2866241 - -11.8  -4.13728   TACAGATGTGCAAAA              GGGGCG CCGG CGCCCC               TTTTTGATGCACGAC  95 67
        msrB NONE
HAP49_RS13635 2863098 .. 2863122 - -12.2   -2.6704   GAAACGGTAAATCGA         CGGGGGCGATG GCGA CATCGCCCC-G          CTTTAGGGACAGCTT  73 39
HAP49_RS13610 2857157 .. 2857188 - -10.1  -3.36327   CGAGGGGATTGATAA      GAGCGGGCCG-CCG ATAAG CGAACGGCCTGCTC      AGAAACCATGCAATT  72 85
        selD NONE
        mnmH NONE
HAP49_RS13595 NONE
HAP49_RS13590 2852409 .. 2852422 -  -5.9  -3.60792   GCGGCAAGGTTGAAA               CCGGC GAAA GCCAG                CCGGAGGCGCTGACG  57 314
        rssA NONE
        rssB 2846069 .. 2846085 - -10.9  -2.90349   CTCTTAAAGCTAAAG              CGCTCAT TTT ATGAGCG              TGGGCTCGATATAAA  70 199
        galU NONE
HAP49_RS13525 NONE
HAP49_RS13520 2842685 .. 2842698 -  -9.5  -5.28176   TCCAGCGATAAAAAA               GGGCC CTAA GGCCC                CTTTGTCGCATATAC 100 51
HAP49_RS13510 2840751 .. 2840766 - -11.8  -5.66684   GAACCGATAAAAAAA              CCCGCC AAAC GGCGGG               TTTTTTATTGCGCCG 100 105
HAP49_RS13500 2836442 .. 2836453 -    -3  -4.99043   CGCGGAGAAACAAAA                TCAT CGCT ATGA                 TTTTAAAGAAAAAAA  73 450
HAP49_RS13495 2834490 .. 2834500 -  -2.4  -2.60075   CGCCGCGGAACGAAT                 GCGG CGG CCGG                 CCTTCCCTATATCCC  39 69
        oppA 2832725 .. 2832751 -   -15  -3.04792   TTATTATTCTCAACA         TGGGCCGGCGGC CAA GCCGCCGGCTCT         TACCGTATCAATGCT  89 33
        oppB NONE
        oppC NONE
HAP49_RS13475 NONE
        oppF 2828762 .. 2828782 - -18.3  -5.60993   TTTCGGATAAAAAAA            GCCCCGCTG ACT CAGCGGGGC            TTTTTGTTGCCGGCT 100 50
HAP49_RS13455 2826448 .. 2826465 - -11.3  -4.78237   GACGCCATAACAAAA             CAGTCCC TTAC GGGACTG              TTTTCGTTTTACCAC 100 34
HAP49_RS13440 2823492 .. 2823511 -  -8.6  -6.23545   TGCAAACAAAAAAAA            GCCAG-CAC GGA GTGGCTGGC            TAAAAAGTTCTTCGA 100 87
HAP49_RS13410 NONE
HAP49_RS13405 2815049 .. 2815063 - -12.8  -4.03234   CGCTGGGGATACAAA               GCGCGG TTT CCGCGC               TGGCTTTCGCCGCCA  86 382
HAP49_RS13395 2813423 .. 2813453 - -11.9  -3.03771   CCAGACCGCCCAATA       CCGGGAACGCC CCGCGATAC AGCGTTCCCGG       CGCCAGCCACCTCTC  77 86
HAP49_RS13385 2812245 .. 2812258 -  -9.5  -5.54079   TCAAAAAGTAAAAAA               CCCGC CGGA GCGGG                TTAATTTCGGTGAGT 100 46
        tonB 2811253 .. 2811270 - -12.7  -4.81249   CTGCAAATGCAAAAA             GGGTCGC CGAG GCGACCC              TTTATTTTTGGTATG 100 48
HAP49_RS13365 2808222 .. 2808251 - -13.5   -4.8622   CGGCGTAAGCAAAAA       CCAAGGGGCGCGC TTCG GCGCGCCCCTTTT        TTGTTTACCCCACCA 100 30
        ompW 2806023 .. 2806041 -   -16  -2.96296   AATAATACCGACACA             GGGAGGCG CAA CGCCTCCC             TGTTTGTGGCCTTCA  90 41
HAP49_RS13310 2797639 .. 2797673 -  -5.7  -4.07885   GACTTGCTCCTAAAA    TGA-TGCCCGCGCGCG TTGC CACGCGCGAAAAATCA     GACCGCCTCGCCAGG  66 23
HAP49_RS13305 2797013 .. 2797026 -  -5.2  -3.79787   TGACATCAACGGAAA               GGCG CCGCGT CGCC                CGCCCCCTCACGCAC  59 2
HAP49_RS13300 2796478 .. 2796488 -  -8.2  -3.53343   AAGTTCGTGCGGAAA                 GCCC CCT GGGC                 GCACCTTATGAAAAA  67 65
HAP49_RS13295 NONE
        rluB 2794489 .. 2794516 - -21.4  -4.64676   CGATTGGTAACAAAA        CGTTCTGGCCCC GAAC GGGGCCAGAACG         GCGGGATTAGCTGCG 100 32
        sohB 2791671 .. 2791689 - -13.1  -4.91285   ATTAAGACAAGAAAA             CGGGGGC GCCTG GCCCCCG             TTGATTCCCGCTCTC 100 48
        topA 2788338 .. 2788354 -  -9.4  -5.84381   TCACCAATAAAAAAA              CCAGCC GCCAG GGCTGG              TTTTTCATCTTGCGG 100 55
        cysB 2787001 .. 2787024 - -13.2  -5.40072   TCCGGGCTAAAAAAA          CCGGTTAGGC AGGC ACCTAACCGG           GTTTGATTTGATATC 100 49
        acnA 2783846 .. 2783863 - -14.1  -3.02371   CCGCGGAAACAATCA             GGGCGCC TTAC GGCGCCC              TTTTTATTGATTAAT  83 40
        pgpB 2781956 .. 2781999 -   -11  -2.53911   CTAACCCTTAAGTTA GCATTTCCCGCTGCGGCAGGG AAA CCCTGCCGCA-CGATAAAACC ACATATCTGCTGGCA  70 210
HAP49_RS13240 NONE
        lapB 2780362 .. 2780380 -   -16  -5.82172   ATGAACATAAAAAAA             CGGGGCGA TTT TCGCCCCG             TTTTTTTTTGCCGCT 100 49
        pyrF NONE
        yciH 2777909 .. 2777942 - -11.5   -3.0634   AACGCGATCGCAACA     CCGCCATCGGCGCCG GCGC CGGTGCAGTCGGCGG      CGCAGTGCTGACCAA  66 299
         fsa 2772574 .. 2772589 - -11.8  -3.41693   CCGAGCATCAAGCAA              GGGCGC CGCG GCGCCC               TTTTTACTGGCTTTA  80 38
HAP49_RS13175 NONE
HAP49_RS13170 2767553 .. 2767576 - -19.6  -4.27316   GGTCGTAACGCAAAA          CGCCGGCGGT GAGA ACCGCCGGCG           CTTTTTTTGCCCCGC 100 46
HAP49_RS13155 2763909 .. 2763936 - -15.5  -4.08767   CGCATCGCCTGAAAA        CGCGCGCCCGG TTCACG CCGGGCGCGCC         AATATTTCCAGGATA 100 10
        dacD 2760118 .. 2760145 -   -12  -2.78384   TTCGCGCTCAGTATA        CCACCGGGCG TCGTCGCT CGCCCGGTGA         GTCAGAGCTTCAGCT  74 27
HAP49_RS13140 2759116 .. 2759147 - -20.4  -4.52589   GGCCGTTAGAGAAAA      CATGATTATGGCCC CGTG GGGCCATAATCATG       GGGGAACATCGGATA 100 54
HAP49_RS13100 NONE
HAP49_RS13095 NONE
HAP49_RS13090 2748120 .. 2748137 -  -8.4  -5.75945   AGCGGGCAAAAAAAA             GCCAGC ACCCGA GCTGGC              TTAAAAAACACTGGA 100 187
        pspA NONE
        pspB NONE
        pspC 2745563 .. 2745586 - -16.8  -3.01924   TAGCGGCGGCGAAGA          TACCCGGCCT GTGC AGGCCGGGTA           TCGCAAGAAGGGTTA  95 38
        pspD NONE
HAP49_RS13060 NONE
HAP49_RS13055 2742772 .. 2742791 -   -15  -4.37886   GCACCGCTCAGAAAA            CGGCGCTC CTGA GAGCGCCG             TCGTGGGGTTATTTG 100 34
        tyrR 2740858 .. 2740881 - -16.8  -3.91716   GCAGCGCTGAAATAA          CAAAGCCGGC GTTC GCCGGCTTTG           GAAACACGCTAAAGG 100 59
        ycjG 2738855 .. 2738888 -  -3.7  -3.66178   GCTCCGAACCGGAAA     CCCAGGCGCTGTGTC ATCT GATCCATCGCCTGAA      GCCGCATTGGGTGGT  53 291
HAP49_RS13030 2737840 .. 2737864 - -12.8    -5.626   CAGGCGATAAAAAAA          CCCGTGCGGC GCAGG GCGGCACGGG          CGGTGTTTGCAGCGG 100 47
HAP49_RS13025 2736051 .. 2736079 - -18.9  -5.24129   GCCGCCGAGAAAAAA        TACCGCCCCCGCA TTG CGCGGGGGCGATA        AATAAGCCCACTCAG 100 37
        zntB 2732414 .. 2732433 -  -9.3  -5.83226   AATCGAATAAAAAAA            TGCCGGT GATTAA ACCGGCA             TTGTACGAATCAAAT 100 197
        ssmE 2726339 .. 2726351 -  -3.4  -5.08824   GCCGCACGCAAAAAA                GTGA TAACG TCAC                CGTGGCCATCGAGGA  76 245
HAP49_RS12980 2725745 .. 2725781 -  -6.4   -3.6215   CGAAGTGACGCTAAA    CGCACAGCAGCTGACG CTCAC CGGCAGCGGCCACACG    CTTATTTATACCCTG  59 83
HAP49_RS12965 NONE
HAP49_RS12960 NONE
HAP49_RS12955 2720411 .. 2720435 -  -2.8  -4.85782   CTGGTGAAAAACAAA         CGCGCCGTGAT CCTG ACCA-GCCGCG          GCGGCATCCATAAAG  75 327
        hrpA 2715625 .. 2715637 -  -4.7  -4.07568   CGCTGCTGTTGAAAA                CCGCC GAC GGCTG                GCAGCTGATCGCCAT  63 243
HAP49_RS12930 2713268 .. 2713283 -    -6  -5.36314   TAAAACAGCAAAAAA              CGCCGG CATT CCGGCC               TCTTATCCCAGTGCA  90 28
HAP49_RS12905 2708094 .. 2708141 - -13.7  -2.69151   CGGCGTGAGACATCA CGTTCATGGTTAGGCCATC TCGGTAAGTC AATTGCCTAACCATGAACG GGCGGCCGGGTCGGT  78 49
HAP49_RS12880 2703862 .. 2703875 -  -3.7  -2.62184   TTCCTGCCCATAGCA               CGGCG CCGT CGGCG                AGCGTTGCGTTAACT  43 106
        pntA NONE
        pntB 2700829 .. 2700850 - -17.3  -4.55295   TCGCTCATAAAGAAA           CGGGCCGCT GAAA AGCGGCCCG            TTTTTCTTTGGTTGC 100 47
HAP49_RS12800 2685504 .. 2685555 -  -9.6  -3.85092   ATCAGGTATAGCAAA GTAATGGCGAATTGGGAGCGAAA GACGCAT TTTCGCCCCCACTT-GCCTTCAC ATCGGCGCCAGCAAC  78 22
        olsF 2683656 .. 2683681 -  -5.5   -4.8048   TGCTTAGATCAAAAA         GGCATGAGT-CA GAC TGTAGTCATGCC         GTCTCGGCCGGCTGC  76 19
HAP49_RS12790 NONE
HAP49_RS12785 2681780 .. 2681802 -  -4.8  -3.66654   CATCCGAAGGTCAAA           TCGGCGGT CAAAGGC ACCGGCGA           TCTGTTCACCGCACT  55 224
HAP49_RS12765 2678411 .. 2678421 -  -8.2   -2.8805   ACTACGCCGCACACA                 GCGG CGG CCGC                 AAGGCGCTGCTGGCA  55 376
HAP49_RS12745 2675494 .. 2675525 - -13.1  -4.71426   GGTTGAGGAACAAAA      CGCAAAAGCAAGC CCGCCC GCTTGCTCCTGCG       CCCTCACATTCTCAC 100 37
HAP49_RS12740 2673798 .. 2673820 -  -4.8  -3.79113   ACGCTGTTATAACAA           TCTTTATCGC TCG GCGTTAATGA           TTTTCAACGCTCTTG  56 160
HAP49_RS12735 2672326 .. 2672338 -  -4.7  -4.15106   CATGAAGTTGGAAAA                CGGCG CGC CGCTG                GAGCTGGAGTTTCGC  65 401
HAP49_RS12685 2664085 .. 2664102 -  -2.5  -4.59853   GCAACGGTTTAAAAA             CGCCCAC CCCG GAGGGCC              TATCACTTTCCTGTT  65 104
HAP49_RS12680 2661881 .. 2661926 -  -5.4  -6.34424   TTTGCAAAAAAAAAA CCTAACCGCCCGTCCGGCCAT GTTCG AT-GCCGGGAGAGAAGTTAGG TTTTGCCTGATCGCG 100 143
HAP49_RS12675 2661142 .. 2661154 -  -4.7  -2.53911   TGAACGCTTAAGGCA                GCAGC GCC GCGGC                CTCCCGATCGGCGAT  44 5
HAP49_RS12670 2660605 .. 2660619 -    -5  -4.59773   TCTGATGTTGAAAAA               GCACTA CTA TAATGC               ATTCCTAAAAGCGTT  73 97
HAP49_RS12665 2657344 .. 2657396 -  -8.5  -3.72576   CGCCCGGCGATCAAA CGCCTGCTGGAAGATGCCGTGCGGCT CTAT AGCCGGCCGG-ATCTGCC-GCAGG-G CTGCATGGTGGTCTC  69 518
HAP49_RS12655 2655898 .. 2655911 -  -3.8  -3.05596   GACTGGCTCAGCGAA               TGCC GAGCAA GGCA                TTGATCTGCTGTGGG  46 4
HAP49_RS12650 NONE
HAP49_RS12645 2654055 .. 2654071 - -15.1  -2.86217   GATGAAGAGCCAAAC              GCCCCGC AAT GCGGGGC              TTTTTTTTACTCGCC  84 32
HAP49_RS12635 2651488 .. 2651502 -  -9.2  -3.88559   AACGACTCCGACAAA               CGGCCG GCG CGGCCA               ACCCGCCCGACAAGA  75 94
HAP49_RS12630 2650223 .. 2650243 -    -6  -3.57144   CGGTGGAGGTGGAAA            CGCCGGAG GATTA CGCCGGCA            ACGTGATGGGCGATC  57 286
HAP49_RS12615 2646146 .. 2646165 - -12.1  -3.07816   GGCTGACTCACTTAA            GGCCGGG CTGCTC CCCGGCC             TTCTCAGCGGCAAAT  77 29
HAP49_RS12595 2640406 .. 2640425 - -12.2  -4.87665   GGCCATTTATAAAAA            CGGCTGAT ATAA ATCAGCCG             TTTTTTATTTTTCAG 100 37
HAP49_RS12590 2639030 .. 2639045 -  -4.7  -3.35046   GGAGCGGTTTAAATA              CCCAA AACGTG TTGGG               CGATTTTGAAATAAA  52 3
        mgtS 2638740 .. 2638773 -  -9.7  -3.53224   CAGCGCGCCGCTAAA     TCCTCCCCATAAT AAATAGCG ATCACGGGGAGGA      TGCATCTAGGCGGAT  74 53
HAP49_RS12580 NONE
HAP49_RS12575 2637042 .. 2637063 -  -9.4   -3.4252   CTTTATGCACCACAA           CGGGCTGC GACGCG GCAACCCG            CTGCTGCTGGCCAAC  69 73
HAP49_RS12560 2631291 .. 2631302 -  -5.8   -3.0464   AATCCAGCGCCAACA                GCGA CTGC TCGC                 AATCGGTGGAACCAT  49 100
HAP49_RS12550 2630186 .. 2630235 -  -2.9  -4.15565   TCGATGATGCCAAAA TGCC-CCGCCTCCAGCATAGA-AC AACGA GCGTCAACGC-GCAGGCGGCGGCA TCACACCGGCGAGAA  59 6
HAP49_RS12545 2629452 .. 2629470 -  -2.4  -3.29541   ACGATGAGGAGAAGA             TAAGCG GCCGACT CGCCTA             TTATTGCCAGTTTTG  44 254
HAP49_RS12540 NONE
HAP49_RS12535 NONE
HAP49_RS12530 NONE
HAP49_RS12525 NONE
HAP49_RS12520 2624797 .. 2624813 - -13.7  -2.89837   ACGGCAAACCAATCA              GGGGCGA TGT TCGCCCC              TTTTTACTTTATATT  80 46
        tetR 2619029 .. 2619041 -  -7.7  -4.42062   TATCCCTTAAACAAA                CGGAT TTA ATCCG                TAACATCACTGCGGC  76 165
HAP49_RS12490 NONE
HAP49_RS12485 NONE
HAP49_RS12480 NONE
HAP49_RS12475 2614243 .. 2614268 - -11.9  -5.60993   TGCGTCACAAAAAAA         TAAGGGAAGGC GCAA GCCTTCCCTTT          TGTCATTCACCGCTC 100 44
HAP49_RS12465 2612442 .. 2612458 -  -2.3  -3.73982   GGCACACTAATATAA              TTGAGAA TCA TTTTCAA              TAAACGAACCATCAA  50 49
HAP49_RS12460 2610155 .. 2610173 - -12.4  -2.74144   GGTCGACCTGGAAAC             GGCGCTGC CCG GCAGCACC             CAGCGCCTGGAAGGC  66 285
HAP49_RS12440 2603837 .. 2603849 -  -4.1  -3.07816   TTTCCACTCAGCCAA                CCACA GCC TATGG                CGACAAACAACCGTG  46 59
HAP49_RS12435 2602926 .. 2602956 -    -4   -2.9961   CGAAAGAATATCACA       GGTTGTCCACATAT TGG ATAGGTGGACAAGA       TCCATGGAAAATCCC  45 195
HAP49_RS12430 2601894 .. 2601920 -  -6.5  -4.09685   CCGGACGGCGGAAAA         CGCTCGCGCGA ATACA TCGCAAAAGCG         GGGATGACGAAAGCG  67 238
HAP49_RS12420 2599493 .. 2599503 -  -8.2  -4.07568   TTTCGGGCTGGAAAA                 CGCG CAG CGCG                 GTGGGTTTATCCTAA  74 32
HAP49_RS12415 NONE
HAP49_RS12410 NONE
HAP49_RS12405 2593623 .. 2593651 - -12.4  -5.24531   ACTTTCCATAAAAAA       CGCGCGCAGCCAA ACGC CCGGC-GCGCGCG        GTCGAAGGTTAGCGG 100 34
HAP49_RS12400 2592917 .. 2592963 -  -9.8   -5.0133   GACGCCGCGAAAAAA CCGATCGCCGCCGTTTGCCACG GTC CGCAGCTGCTGGCGGCGGCCGG AGTGTTGAAAGGCCG 100 217
HAP49_RS12390 2590844 .. 2590870 -  -7.3  -2.64322   ACCGCACGTAAAGAG        CGCGGCATCTAC CCAG GTTGATGCC-CG         TATCCCGGCCTGCCC  55 59
HAP49_RS12380 2587456 .. 2587497 - -12.4  -2.78596   CAGCCGCTTAGCATA CCGCAGTTGCCGCCGCT-TGC CGA GCGGAGCGGCGGCAA--GCGG CGTATCCTTCGCCGG  74 41
HAP49_RS12375 2586606 .. 2586628 -  -9.1  -3.17194   ACGGTGTTAAGCGAA           GGCGCGG GTGTAGGGG CCGCGCC           TTCGGCCCCTACAAT  65 179
         fes NONE
HAP49_RS12360 NONE
HAP49_RS12355 NONE
        entS 2572166 .. 2572188 - -14.8  -3.02144   CCACTGGGGGGAACA           GCACCGGCCG GAA CCGCCGGTGC           CATAAGGGGTTAATT  86 35
HAP49_RS12340 2571018 .. 2571061 -  -9.8  -3.85698   TCCTTTGTCGATAAA TTAGCTAAATAGCATGCATT TTTC ACTGCATGCTATTTAGATCA CTTAATGATGAACCA  78 4
HAP49_RS12335 2569043 .. 2569056 -  -3.9  -3.96216   GTGTTACCGAAACAA               TAACA CCAA TGTTA                ACCCGCAATGTCCAA  57 23
HAP49_RS12325 2567590 .. 2567618 -  -5.1  -3.53091   ATGTTGGCGGGCAAA        CGGGCGATGCTGA TCG TCAGCGCCGGCGG        GTGGGGATCCCATTA  53 354
HAP49_RS12315 2565814 .. 2565837 -  -5.2  -3.33815   AGCGCGGTGAATGAA          CCGGGCCGCAC CCT GTG-GGCCAAG          GTTAACGTCACCTTC  53 365
HAP49_RS12295 2562285 .. 2562321 -   -11  -3.92542   GTCAGCGCTAAATAA   CGTTAACGTGCAGGTTC CGAA GAACCTGCACGTGA-CA    TTGTCACTCAATGCT  84 29
HAP49_RS12280 2559633 .. 2559653 -  -3.2  -4.33165   TCAAACCGACGAAAA           GCC-GGCGC ACCT ACACCTGGC            ATTTGTCGCAAGCAG  64 292
HAP49_RS12260 2556896 .. 2556910 -  -7.1  -3.70902   GGCCGGACACGCAAA               GCAGC CATTT GCTGC               GCATGGAAGGCTACC  62 488
HAP49_RS12250 NONE
HAP49_RS12245 NONE
HAP49_RS12240 2552851 .. 2552874 - -11.7   -4.1347   TTGTAACGATAGAAA          GCGCAGCGA ACGCAA CCGCTGCGC           CCGGTGTTACCGGCT  95 32
HAP49_RS12235 2551462 .. 2551490 - -10.2  -3.59979   CTGTTCGAGCTGAAA        TTGCGCGCCGGC CAACC GACGGGGCGCAA        GGAGCTCAAACCGCT  70 459
HAP49_RS12205 2544905 .. 2544918 -  -3.7  -2.53263   TGGATGCGGAAGGCA               GACGC TACG GCGGC                ATTTCCGGGCAGCCG  41 314
HAP49_RS12185 NONE
HAP49_RS12180 NONE
         eno 2538890 .. 2538914 -  -4.1  -4.77757   GGTCAAAAATGAAAA          GTTGGCCGG TGCGTGG CCGGCCTGC          ACAGATTAGCGGCGT  72 31
HAP49_RS12165 2537025 .. 2537044 -  -3.7  -3.76767   TTAATAACATAAATA            GAAAATA GCGGCT TATTTTC             ATCTATTCACCACCT  54 204
HAP49_RS12160 2535340 .. 2535354 -  -2.7  -2.90075   TTCGCTCCAATCAGA               CTGGC TTGAC GCCGG               CGGCCAACAGCGCCT  42 6
HAP49_RS12155 2533804 .. 2533825 - -13.1  -5.52023   ATGAGCAATAAAAAA           GCCGATAAC AAAC GTTATCGGC            TTTACAGGCAGGGGG 100 47
HAP49_RS12150 2532353 .. 2532371 -  -8.8  -3.25088   TTGCAAAGCGACGAA             TGGCGGCA GAC CACCGCCA             TGCTGAGCGGCATTC  58 458
HAP49_RS12140 2531370 .. 2531380 -  -2.4  -3.67296   GATGAGGGATTTAAA                 GGCG TAT CGAC                 AGCTCGACGTCATCC  50 10
HAP49_RS12135 2530199 .. 2530215 -  -2.9  -2.72461   CAATGTTGGCGAAAT              GTGACGA AGA TCGCAAC              CTTTAAAGCGTAACC  41 44
        pqqA 2530009 .. 2530029 -  -9.7   -4.5081   AAAGAGGGAAAGAAA            TGCCCGC GCGAAAG GCGGGCA            GACGGGCGATTAACG  90 35
        pqqB NONE
        pqqC 2528309 .. 2528319 -  -3.2  -2.79183   TTCAGCGTCATTACA                 CCAG CCT CTGA                 TTGTGCCAGACCCGC  41 10
        pqqD NONE
        pqqE NONE
        pqqF 2524366 .. 2524377 -  -2.2  -3.13403   CTTCTCTCAGGAAGA                CGAT CATT ACCG                 TAGTCAAATCTGGGC  43 230
HAP49_RS12090 2519502 .. 2519531 -  -2.7  -3.14132   GCTGGTCGGCATGAA       GCTGGC-GCCGTTC GGC GAACGGCAGGGCGC       TTAGCGGCCCTCGAC  44 26
HAP49_RS12080 2517243 .. 2517261 - -17.4  -3.30243   ATTGAGCGGCGATAA             GGCCCCGC TGC GCGGGGCC             TGTTGCTCTCTCAAT 100 36
HAP49_RS12070 2513605 .. 2513628 - -16.8   -5.0538   GGCCATGCGAAAAAA          GAAGGCCACC TGCG GGTGGCCTTC           TTGTCATTACGCCGG 100 43
HAP49_RS12050 2508765 .. 2508782 -  -4.8  -2.71144   GACGGCTTGCAATCA             GCCTGC TGGCTC GCAAGC              GATGGTGGCTGTGTA  44 98
HAP49_RS12045 2508384 .. 2508398 -  -2.8  -4.54253   AAATGATGAAAGAAA               CAATGC CGC GCATTC               TCGGCGCGCAGCCGC  69 61
HAP49_RS12035 2506164 .. 2506192 -  -3.7  -3.51232   CCTGGGTGAAATCAA        CCGCTTGCGCC AGCAGAG GGCGCTATCAG        GCCACTACGCGCGCC  52 22
HAP49_RS12030 2505566 .. 2505588 - -11.3  -3.08015   CGAAGGAGGGGAAGA           CACCCGATC CTGAC GATCGGGCG           TGGTGGCGCGTTTAG  74 37
        fabZ NONE
HAP49_RS12020 2504107 .. 2504123 -  -7.2  -3.15861   TACCATGTGGACGAA              GCGGCC AGCCA GACCGC              GTCGCCGCTCGTTCT  59 40
HAP49_RS12015 NONE
HAP49_RS12010 NONE
HAP49_RS12005 2502528 .. 2502540 -  -4.1  -3.62046   TCAGGTGGCCAACAA                CACCA TGC TGATG                AAGGATCTGTTTCCT  53 262
HAP49_RS11985 2497983 .. 2498000 -  -4.7  -3.09834   TACCTCAGCAGTGAA             GCCGGCA TTGG CGCCGCC              GCCATCGGCTTTCTT  48 462
HAP49_RS11970 2495038 .. 2495066 - -17.5  -2.62184   GCCGCCGTCAGAGCA        GCTGCCAGCAGCT GCC AGCTGCTGGCAGG        CTGCGCCTTAGCTAT  95 86
HAP49_RS11965 2493599 .. 2493610 -  -2.2  -2.84234   TATTAATTTAACAAT                GCAA TCAG TCGC                 GGCAGCGCGCCAGGG  39 1
HAP49_RS11960 NONE
HAP49_RS11955 NONE
HAP49_RS11950 NONE
HAP49_RS11945 2489175 .. 2489187 -  -3.3  -3.53444   CCAGCCTGGCGCAAA                CCAGC ATC GCCGA                AATGGCCGGGCAGGT  49 475
        osmB 2487766 .. 2487802 - -18.1  -5.38054   TTCGATAAATAAAAA    CAGGCCGGCGCTTAT GGATTAA AAAAGCGCCGGCCTG    CAGAGATTATTTTAA 100 49
HAP49_RS11915 2483989 .. 2484001 -  -2.6  -4.25104   GGCTGGCGATCAAAA                CCGG TACCG CCGA                GAAAATGGGCCCGAG  62 497
HAP49_RS11900 2479692 .. 2479715 -  -5.8  -4.19624   GATGCTGAAGACAAA          CGCCGGGTGC GGGT GCGCCTGACG           CCCGCCGGGCTGGGC  67 225
HAP49_RS11880 2475826 .. 2475851 -  -6.1  -4.07885   CAGCGTGGCGCAAAA         GCTGATTGTGG AGAA CTACAAGCAGC          ATAACCCGTTCGTCG  65 469
HAP49_RS11855 2472425 .. 2472435 -  -2.6  -2.86449   ACCTGATGATAACGA                 TATT TGC AATA                 GCTTCAAAAGGTTGA  39 29
HAP49_RS11850 2471334 .. 2471347 -  -4.5  -3.80625   GGCGTAGAATCCAAA               CAGCC TGAT GGCTA                CTTTGACTGGGATGT  56 167
HAP49_RS11805 NONE
HAP49_RS11800 2461970 .. 2461983 -  -9.5  -4.93333   AAGGAAAAGAGAAAA               GGGCC GAAC GGCCC                TTTTTTTACGACTGG 100 31
HAP49_RS11790 2459500 .. 2459535 -    -6  -3.23216   CTTGAGCATGAGCAA    GCGCCTCCATCC-GC TGTGGGT GCTGGCCGGTGGCGC    GCTGCTTGGCTTGCT  51 55
HAP49_RS11775 2457190 .. 2457220 -  -7.5   -4.1891   TTTCTCCAATATAAA      GCCGTG-CGCCTGC AGAA GCAGGCGACAGGGA       AGGCGCGATCGCCAT  74 266
HAP49_RS11770 2455969 .. 2455995 - -23.8  -4.96388   AAGCAGTAAAGAAAA         GCGGCGAGGGAG CGG CTCCCTCGCCGC         GGCGTCAGCGGCTGC 100 30
HAP49_RS11720 2443568 .. 2443581 -  -5.9  -3.58269   CAAGGGATCCCCAAA               CCGGC CACC GCCGA                ATTGGGCTTTATGCC  57 189
HAP49_RS11695 NONE
HAP49_RS11690 2435691 .. 2435703 -  -4.7  -4.47551   AGTTAATCCAGAAAA                TCGCC CAG GGCGC                GGAAGAAGCCGTCGA  68 0
HAP49_RS11685 NONE
HAP49_RS11680 NONE
HAP49_RS11675 2432776 .. 2432792 - -10.8  -4.99947   GGTAAGCAAACAAAA              GGGCGC GTTAT GCGCCC              TTCGTCTTTTTGGCT 100 51
HAP49_RS11655 NONE
        fecR NONE
HAP49_RS11645 2423736 .. 2423766 - -14.7  -3.96624   CACGTTGATGAGAAA      GACGGCGAGCACGG TTAA CCGCGCCCGCCG-C       TGCGGATCAGAACTT 100 32
HAP49_RS11640 2423021 .. 2423051 -  -5.2  -5.37593   GCGGAAAGCAAAAAA       GATGACACCGGGCC GGC GGCCCGATGCTGAC       TAGCGCTGAGGCGGC  91 25
        ydfG 2422145 .. 2422171 - -15.9  -3.72576   CGCGGCCTGAGGAAA        CG-CGGCGGGAG TTGC CTCCCGCCGTCG         CGGCTCAGGCGCCGC 100 30
HAP49_RS11625 2421255 .. 2421287 - -10.5  -3.25986   ACAGGATAGCAGCAA      CGGCGGCCGGG TTTCACGCTTG CCCGCCCGCCG      CAGGCGGATTAAGGA  73 34
HAP49_RS11620 2420869 .. 2420889 - -11.1  -4.29472   TAAAGGAAAAGGAAA            GGGCGCG GCTGTTG CGCGCCC            TGGGTAGCCGATGCG  91 43
HAP49_RS11610 NONE
HAP49_RS11605 NONE
        osmW NONE
        osmV 2415330 .. 2415371 -  -2.1  -4.38116   GTGAGAAAAATCAAA GGGTCATCAGCGCATTGTGC TTG GCGCTCCG-GCCGATGACCA GTGAATCTTTATCAA  60 80
        clcB 2413690 .. 2413714 -  -4.1  -4.93296   GCATTACGAGAAAAA          GGGGCTGATCG CCT CGATAGGCCGC          AACGGTTTACGTCGC  77 310
HAP49_RS11580 2412805 .. 2412825 -  -6.7  -3.14132   GGTGGTGGGCATCAA            GCTGGGCTG CGT CAGCCACGC            GTTGCTGACCGCACA  53 245
HAP49_RS11560 2408069 .. 2408082 -  -3.1  -4.42806   GTATGGCGAAACAAA               GC-GGA CGA TCCTGC               CGGTTCGGCGACGCG  67 486
HAP49_RS11545 2403719 .. 2403736 - -12.7  -3.14132   GCCGCCTTTTATCAA             CGCCTGC TGGG GCAGGCG              CCGGTGGAGCTTTCG  73 300
HAP49_RS11525 2401188 .. 2401205 - -14.1  -2.74144   GCGTCATGCCTAAAT             GGGGCGC GGTT GCGCCCC              GTCTTTTCAAGCCAA  82 32
        manA 2397481 .. 2397492 -  -7.2  -5.24129   GGGGCCGACAAAAAA                CGCC CGCA GGCG                 TTTAATTGTGGGGGT 100 84
HAP49_RS11505 2395840 .. 2395857 - -14.1  -5.27335   CGGCGTAAATAAAAA             GGGCCCC GCAG GGGGCCC              TTGTTAGGTTTTCAG 100 45
HAP49_RS11495 2393647 .. 2393667 - -15.4  -2.83119   AAGCGCTGACAATCA            GGGGCGCC GGCGG GGCGCCCC            TACCACCGATGCTGC  84 25
HAP49_RS11485 2391377 .. 2391389 -  -3.3  -3.28712   CCTGCCGGCGCAGAA                CGTCA TTC TGCCG                CCGACGCTGATCCGG  46 52
HAP49_RS11475 NONE
HAP49_RS11470 2387343 .. 2387364 - -12.9  -2.53263   TTCAGGCGTAACCGA           GGGGCGGGC AGAG GCTCGCCCC            CTCGCGTTATTGCTC  75 32
HAP49_RS11455 2385475 .. 2385488 -  -3.1  -5.24129   TCGTTGCATAAAAAA               GTGAC TTGC ATCAC                AAATAATGCGAGGAG  80 61
         add 2384366 .. 2384381 - -11.8  -3.84406   GGGGGATGAGAAGAA              GGCGCC GTTT GGCGCC               TGGGGAGATTAGCCC  86 34
HAP49_RS11445 2383723 .. 2383733 -  -8.2  -3.34398   GCTGGCGGCCAAATA                 GGCC GCA GGCC                 GCTAACGGTGGCCCA  65 27
HAP49_RS11430 2380828 .. 2380853 -    -9  -5.55855   CCTAAAAAAATAAAA         GCCGCCTATT ATCGGG AATCGGCGGC          CGGACGACAACATAT 100 113
        rsxA 2380231 .. 2380247 -  -3.7  -2.65298   CGCAGTCATTAGAAT              TTCACCA GCC CGGTAAA              GCCCATAAAGGCCAG  43 2
        rsxB NONE
        rsxC 2377312 .. 2377337 - -16.1  -3.76224   TTTCTATCGATTAAA         TGGCGCCTGGC GTCA GCCAGGCGCCG          CTATCATTATTTGTC 100 32
        rsxD NONE
        rsxG NONE
HAP49_RS11395 NONE
         nth 2372883 .. 2372896 -  -3.7  -4.18018   GTTTTTCACTGAAAA               CCGCG ATAA CGCCG                GGGTTACTGCTGCGC  61 120
        dtpA 2370822 .. 2370843 - -13.7  -5.60993   TGCGGCATAAAAAAA           CACCGGGGC GTTA ACCCCGGTG            TTTTTATTTACGCTC 100 54
        benE 2366606 .. 2366619 -  -3.7  -3.36766   GACAGAGAAAGTGAA               GGCGC CACG GCGTC                GCTTGTCAATGTAGA  50 48
HAP49_RS11365 2365691 .. 2365703 -  -3.3  -4.30719   GCCCGCGAGAAGAAA                GCGTG CTG CACGG                CGATATCCACCATGA  64 360
HAP49_RS11355 2364328 .. 2364368 -  -6.1  -3.31144   GCTTGACGCCTATAA CGCCCGCGACATCGAGGCC TTTAT GGCCT-GCTGG-GCGGACG ACGCCCAGTATTACG  52 314
HAP49_RS11345 2363390 .. 2363408 -  -4.4  -4.63932   CAGCTCCGAAGAAAA             CGGCCGCA ATC TGCTGGCG             GCGCTGGCCCCCGAT  72 340
HAP49_RS11335 2362421 .. 2362431 -  -4.6   -3.2891   GGGCATAACGAAAAT                 GCCC CGT AGGC                 CGGCATTACACCTCC  50 31
HAP49_RS11330 2362052 .. 2362069 - -12.7  -5.47159   GCTAATAAATAAAAA             TCCCCGC CGCG GCGGGGA              GGGTTGGCTCAGCGC 100 34
        dapA 2360841 .. 2360859 -  -5.9  -3.38162   AGCTAACAAATTTAA             CCGACGA TCGCC TCGGCGG             GCTGCAGCTGCGCCA  57 3
        gstA 2360094 .. 2360147 -  -2.3  -4.17089   TTCAAAGCGGTAAAA CTGTAAGCAGCATCGGGCCCCGGCGA GAG CCGCCGGGGCTGAACCTTACTT-CAA TCCTTCGGCGTTCAG  57 17
HAP49_RS11310 2355454 .. 2355471 -  -5.5  -5.21506   AGAAGAAGACAAAAA             CAGCGGCA AGG CGCCGC-G             CGCCCAGTACGTGCT  87 456
HAP49_RS11285 2351369 .. 2351388 -   -15  -5.02323   GCATCAGAAATAAAA            CCGGAGGC GATT GCCTCCGG             TTTGCCGTGTGCCGC 100 49
HAP49_RS11275 NONE
HAP49_RS11270 NONE
HAP49_RS11265 2347339 .. 2347354 -  -2.5  -5.03314   TTGATCCGCAAAAAA              CCG-GG AAACA CCTCGG              ACCCTATGCCGACGG  77 240
HAP49_RS11255 2344921 .. 2344943 -  -9.8  -4.04579   GGCAGAAAGAGGAAA           GCCGGGCG GCGAAAG CACCCGGC           TTTTTTTATGCCGAT  80 43
HAP49_RS11235 2341900 .. 2341921 - -17.3  -4.14874   AGAATACGCGGAAAA           CGCCAGGCC GAGC GGCCTGGCG            GCGGGGCGGTTTAGT 100 36
        eptA 2340092 .. 2340110 -  -9.5  -5.80364   ATGGGAATAAAAAAA             CCGGCGC ACAAA ACGCCGG             TTGTCTGCAAACTAT 100 71
HAP49_RS11225 2339360 .. 2339374 -  -4.3  -3.05816   GCATCCTGTATTTAA               TAGAC CGGTC GTCTA               GTAATGGGCGATAAA  48 84
HAP49_RS11220 2338200 .. 2338221 - -11.5  -5.28176   GCGACGCATAAAAAA           CGGCCATGC GATT GCGTGGCCG            TTGGGGTCAGGACAG 100 42
        gloA 2337458 .. 2337479 - -11.5  -2.82623   TCGCGCGGAGAATCA           GCAGGGCGC CAAC GCGCCCTGA            AGGGGAGGCTTAGTG  71 35
         rnt 2336333 .. 2336352 -  -4.3  -5.07567   CGACACTTGAAAAAA            TTCAGCA CCAGAT CGCTGAA             AACCCGATTCTGCTT  81 399
HAP49_RS11200 2334964 .. 2334978 -  -2.2   -3.6849   ATTCAATCTTAACAA               TTTTCA TCA TAAAAA               ACAGGAGGAAAAGCG  50 123
        sodB 2334255 .. 2334273 -   -16  -5.28176   GCCAGTTATAAAAAA             GGCGCAGC CTG GCTGCGCC             TCATCACTTCGGCAA 100 50
        purR 2332497 .. 2332510 -  -8.1  -3.30124   CTGGACGCTGGATAA               CCAGC GGCG GCTGG                TGGTGCCGGACTGGA  60 309
HAP49_RS11175 2330359 .. 2330380 -  -5.9  -4.34482   CCCTTTAAAAAAAGA           GTGTGACGCA AGG CGCGT-ACAC           AATAGCTGATTGAGA  71 163
         cfa 2328978 .. 2329002 - -12.8  -6.43839   AGAGCAAAAAAAAAA          GCCCCGGCGA AGATG TTGCCGGGGC          TTTTTTATCGGGAAA 100 45
HAP49_RS11155 2326293 .. 2326330 - -27.1  -3.53012   GTTTTTTTCCGCAAA   CCGCAGCCCGGCCGG GGAGGAAA CCGGCCGGGCTGCGG    GTTCAGCGTGTGGAT 100 28
HAP49_RS11150 NONE
HAP49_RS11145 NONE
HAP49_RS11140 NONE
HAP49_RS11135 2325352 .. 2325368 -  -9.3  -5.95449   AAACAAAATAAAAAA              CCGCGGC GGT GCGGCGG              ATAGAGCAATACGGG 100 112
        pykF 2323601 .. 2323615 - -12.8  -5.93809   TGCTGATAAAAAAAA               CGCCGC AAA GCGGCG               TTTTGATCAAGACAA 100 58
HAP49_RS11125 2323063 .. 2323081 -   -16  -6.32216   ACAGACAAAAAAAAA             CGGCGCAC AAT GTGCGCCG             TTTTCAATAACCAAA 100 47
HAP49_RS11085 2314888 .. 2314917 -    -5  -3.96624   GAGGGCGAGCAGAAA       GTGG-TGGGGCTG GAGAT CAACGCCAACCAC       CTGCGCGCGGTGTTC  63 218
        ydiK 2310218 .. 2310241 - -11.7  -3.04715   GACGGGCGTGAAAAG          CTCCGCCCG ACGCTG CGGGCGGAA           GGGGGAATTAGCGTT  77 33
        rprA 2309770 .. 2309796 -  -4.4  -4.85782   TTGTCGAAAAAGAAA         TAATGTCTCGGC CTC ACTGAGGCATTA         ACGTCGGGCCGCAGT  74 111
HAP49_RS11055 2306015 .. 2306028 -  -6.7  -5.77632   AAAAGCACAAAAAAA               TCAGC TGCT GCTGA                AATAAACGGCAGGCG 100 71
HAP49_RS11050 2304801 .. 2304819 - -11.6  -4.01137   GACAGAAGGGAGAAA             GCCGGGGC GAG GCCCCGGT             CTATGTTGCGTCAGA  86 36
HAP49_RS11045 2304194 .. 2304214 -  -2.4  -2.52464   TTTTTGTCGAACGGA            CATCCGGC GGCGG GCCGAGCG            CACTCGGCCCGTAAA  38 50
HAP49_RS11040 NONE
HAP49_RS11035 NONE
HAP49_RS11030 NONE
HAP49_RS11025 NONE
HAP49_RS11020 NONE
HAP49_RS11015 2297981 .. 2297998 - -14.1  -4.80882   AGCTGAGATGAAAAA             GGGCGCC TCAT GGCGCCC              TTGATGTTATTGACG 100 32
HAP49_RS10890 2272724 .. 2272755 -  -9.4  -3.92542   CCGATGGGGAAATAA      CGGCAACGGGCGCGA CGA TCGCGCCCGTTTT-G      TGTGATCAGGCGGCC  75 31
        ghoS 2264580 .. 2264596 -  -2.9  -3.21258   ATCAATTGAAGCGAA              GTCAAGC GCC ACTTGCC              CACCGCCGGCGGGGT  46 86
HAP49_RS10850 NONE
HAP49_RS10845 NONE
        yfeC NONE
HAP49_RS10835 2260806 .. 2260829 -  -6.7  -3.63744   CCCGTGGTGAAAACA          CGACG-CGGC GCACA GCCGGCGTCA          AAGGCGGCGATTTTT  62 177
HAP49_RS10830 2259845 .. 2259866 - -18.7  -3.27298   GGCCTGAACCATGAA           CGGGGCGCC GCTC GGCGCCCCG            GAACGTCATGACGCT 100 31
HAP49_RS10820 NONE
        hxpB 2257005 .. 2257019 -  -2.8  -4.72029   GCCAATTCAATAAAA               TGAAAC GGT GTTTCG               TTTATTTTGCGGTTC  66 86
HAP49_RS10810 2255975 .. 2255996 -  -5.9  -4.82901   TCTTTCTTATAAAAA           CGAC-TACGC ATC ACGTATGTCG           CGATGTAAATATCGT  78 152
HAP49_RS10805 2254512 .. 2254528 - -13.7  -5.40072   CGGGGCGTAAAAAAA              CCGGGGA TTA TCCCCGG              TTTTTTCGTTCTGAG 100 47
        phnR 2251547 .. 2251560 -  -6.7  -3.66178   CGGGTTAATGCGAAA               CTGGT ATAC ACCAG                ATATGCGGCCAAGCT  64 155
HAP49_RS10785 NONE
        phnT NONE
        phnU NONE
HAP49_RS10770 2247454 .. 2247465 -  -2.2  -3.05343   GGGATACGGCGAAGA                TGCC GAAG AGCA                 GGAGGCGGGGATCCG  41 258
HAP49_RS10760 2245157 .. 2245168 -  -7.2  -2.78463   AGCGTGTCTACGACA                GGGC CGCA GCCC                 TTTGAGGAGCGGCGA  56 93
HAP49_RS10745 NONE
HAP49_RS10740 NONE
HAP49_RS10735 NONE
HAP49_RS10730 NONE
HAP49_RS10725 NONE
HAP49_RS10720 2237056 .. 2237071 - -10.4  -4.56597   TTCGCCTGTGAAAAA              CGCACC CTCG GGTGCG               TTTTTTTTTGGTTGC  91 53
        yebS NONE
HAP49_RS10695 2229517 .. 2229541 - -22.9  -5.49809   CAAAGCGGAAAAAAA          CAGGGCCCGGC ATT GCCGGGCCCTG          AGGGAAACGCGAAAG 100 41
        rsmF 2227782 .. 2227798 -  -4.4  -3.37283   GAAAGCCCGCAAAGA             CGCCACC CAGA GGTGG-G              TTGAACGTATTCATT  52 245
HAP49_RS10685 2227189 .. 2227201 -  -6.9  -3.78953   ATCCGCAGCAGCAAA                GCGCG CGC CGCAC                CGTTACCAGGTGACC  64 28
HAP49_RS10680 NONE
HAP49_RS10675 NONE
HAP49_RS10670 2225255 .. 2225277 - -11.2  -3.59979   GTCGCCGAGCGCAAA           CGGCAGCCAG CCG CCGGCCGCCA           TGCTCAGCATGGCAA  79 103
HAP49_RS10665 NONE
HAP49_RS10660 NONE
HAP49_RS10655 2221489 .. 2221515 - -17.4    -5.626   CATCGCATAAAAAAA         CGCGCTGTTTCC GAT GAAAACAGCGCG         TTGTCAGCCGTTTTG 100 49
HAP49_RS10635 2219243 .. 2219259 -  -6.5  -4.12188   CTACGATGCGCAAAA              TCACGTC AGT GACGTGG              CGATCAACCTGGGCG  69 265
        pckA 2214145 .. 2214162 - -12.7  -4.36914   GGCGGCGTGAGAAAA             GGGCCGA GGGT TCGGCCC              TTGCAGACAGGTATG 100 67
HAP49_RS10600 2210504 .. 2210517 -  -2.3  -3.91465   CTCGAAAAAATAACA               GGCCT CCAC AGGGC                GATTACCAGAGCAAC  53 28
HAP49_RS10595 NONE
HAP49_RS10590 2208587 .. 2208613 - -14.5  -3.59979   CTGGGGCAGTGCAAA        GCGCGGC-TTCG GCGC CGAACGCCGCGC         CGCGGCGCGCTGAGG  89 67
HAP49_RS10580 2206303 .. 2206314 -    -3  -4.54821   ATGTTAATCACAAAA                GTTA ACGT TAAC                 ATTATTGATTTGTGA  64 77
HAP49_RS10575 NONE
HAP49_RS10570 2203429 .. 2203439 -  -2.4  -3.59262   CGTGATACGGTGAAA                 GTGC CTT GCCC                 GCTGTTGGAGCGTGG  49 92
        hutC NONE
HAP49_RS10545 NONE
        hutG 2197313 .. 2197332 -   -15   -4.9218   GAGGCAGGAGAAAAA            CAGGCGCC CGGC GGCGCCTG             TAAAGGGGGATCAAT 100 36
HAP49_RS10535 2195550 .. 2195586 -    -8  -4.07568   TGCTGGCGGTCAAAA   CCGGCAGCGCACG-CTGA GCG TCAGTCGCG-GCCGACGG   TGCTGCGGCGGAAGG  74 9
HAP49_RS10520 2193767 .. 2193781 - -12.8  -4.85822   ATCAGAAACAGAAAA               CCCCGC CTG GCGGGG               TTTTTTTTTCGTCAT 100 40
        puuD NONE
        puuR NONE
        puuC NONE
HAP49_RS10475 2183700 .. 2183726 - -20.2  -2.53911   CTAAGCGTTAACGCA         CAGGCCCGGCCA TGA TGACCGGGCCTG         CTGTTTTAGACGCCG 100 31
HAP49_RS10460 2181074 .. 2181115 -  -6.4  -4.08216   CGAGCTGTGGGAAAA CCGCTGGCACGGGGCGCAG GTGCT CGGCGCCA-GTTTCAGCGG TTCCGATCTGTCCGG  67 202
HAP49_RS10440 2178224 .. 2178240 -  -9.3  -3.44527   GATGGAGTATCACAA              CGGCGCC ATC GGCTCCG              TGTGGGCTTCGGCGG  65 440
HAP49_RS10410 2172579 .. 2172604 -  -2.5  -3.50133   CACCGGCAGAAAAAC         CGC-CTGGACGT TTA AGGTTCAGAGCG         AAAACAGCAAAGTGG  47 257
HAP49_RS10400 NONE
HAP49_RS10395 2170844 .. 2170855 -  -5.8  -3.23393   CTGTACCCTACAACA                CTGG ATCC CCAG                 AATAAATCGCCCGTC  55 39
HAP49_RS10385 2169196 .. 2169213 - -14.1  -5.76633   CCACAGACAAAAAAA             GGGGCCC AAAC GGGCCCC              TGCGTGATTCGCTGC 100 48
HAP49_RS10380 2168586 .. 2168598 -  -6.9  -3.36273   GTCGCCGAACACGAA                CCGCA GCG CGCGG                CGCAGATCCGGGCCT  55 357
HAP49_RS10370 2167595 .. 2167621 -  -3.7  -4.42062   GATCCGGTAAATAAA         GAGGTTGACGA TCTTT TCACCAACCTT         GGCGACCCAAAGAAG  69 481
HAP49_RS10360 2166502 .. 2166514 -  -3.4  -3.60048   TCGTTTTCAAAAAAC                TCCA CTTTT TGGA                TTATAGCTGCTTGAC  49 218
        uspF 2165956 .. 2165974 - -14.6  -2.78679   GGGCTTCATGTAAAG             CCACCTCC TCA GGAGGTGG             TCTTTGACTGTCTAC  82 70
        rluE NONE
HAP49_RS10330 NONE
HAP49_RS10325 NONE
        mnmA 2160063 .. 2160081 - -11.7   -5.7946   TTTTGAATAAAAAAA             CGCTGCG GTAAA CGCAGCG             TTTTTCTTGGGCGGC 100 48
        hflD NONE
        purB 2155793 .. 2155810 - -14.1  -5.03201   AATAATAAGCAAAAA             GGCGGCC CGTG GGCCGCC              TTGTCGTTGTGGGTC 100 49
HAP49_RS10285 2151542 .. 2151578 -    -5  -2.94924   GCCCGACGCACAAAT   CCGAC-ATCGCCGTCGC CGGT GCGGTGGCGATCGCCTG    GGCCGTCGCGCGAGC  46 522
        phoP NONE
        phoQ 2148484 .. 2148510 -  -3.5  -3.25072   GCGATTATAACGGAA         GTTTGGCCCCG TGGAT CGGGGCCGCAG         CGGCATAATTTACTC  48 35
HAP49_RS10265 2147278 .. 2147295 - -12.7  -5.71983   GCAAGCATAAAAAAA             GCCACCC GATA GGGTGGC              TTGTTCGCGTACTCG 100 44
HAP49_RS10190 NONE
        potA NONE
        potB NONE
        potC 2133379 .. 2133398 - -16.4  -3.42574   TGAAGGGGATCACAA            CCGGGCGC CGCA GCGCCCGG             CGGGATGGGTTACTC 100 35
HAP49_RS10170 NONE
HAP49_RS10165 2130195 .. 2130214 - -16.4  -2.70932   GCCTGGTTTGAACGA            CGCGGCCG CTGA CGGCCGCG             CCGTTTAGCGCCAGT  91 30
HAP49_RS10155 NONE
        potD 2128173 .. 2128203 - -11.8  -3.85817   ACCGGCCCTGAGAAA       GGCATCAGGGCGCA ATG CGCGCCCTGATGGG       ATGGCGGGCGTATTA  86 38
HAP49_RS10120 2122041 .. 2122064 - -10.3  -3.08464   CGACGATGCACGCAA          GCGCGACGCC AACAA GGCGTCGC-C          GGGAGGAAAGATAGA  71 59
         mfd 2118389 .. 2118415 - -17.2  -2.76696   TCCCGCGCGAATAAG         CCGCCCCCGCCG CCA CGGCGGGGGCAT         TGGCTCAGACCGCCA  95 30
HAP49_RS10105 2116548 .. 2116570 - -17.8  -2.83191   TCGATAATAGAGAAG           TCAGCCGCAG ATT CTGCGGCTGA           AAAGAAAGGTGACAG 100 56
        dauA 2114654 .. 2114669 - -10.4  -5.76949   CATCGCCAAAAAAAA              GCCCGA CGCG TCGGGC               TTTTTTACGTTTAGG 100 36
        lolB NONE
        ispE 2107265 .. 2107288 -  -8.8  -3.36327   GCAGCGCAGGGATAA          CAGGGCCAGG TGTG CATGACCCTG           CGCAGCGAAACGTTG  69 43
         prs 2106088 .. 2106113 - -13.3  -4.59069   ACTACAAGTAGAAAA         CCCGTTGTTGC TCGC GCACCAACGGG          TTTTTCTTTTCTGCT 100 96
         pth 2104797 .. 2104819 -   -17  -3.66908   CGCGGCTAAAAGCAA           GCAGCGGGCA GGG CGCCCGCTGC           GGCAAGGATCAGGCC 100 34
        ychF 2101773 .. 2101790 - -11.3  -5.79595   CCCGAAAACAAAAAA             TCCACGC CGAA GCGTGGA              TTTTTCCGTTTCCGG 100 70
HAP49_RS10025 2099518 .. 2099545 - -11.3   -3.6806   ATAGACGGATTGAAA       CCGCCGGC-GCCG GGAA CGGCGGCCGG-GG        AGAGGTGGCGCAAGG  76 180
HAP49_RS10015 2098365 .. 2098375 -  -4.6  -3.53012   CGGTGTTGTGTGAAA                 CCGC CGT ACGG                 AAGATATCCGCCAGA  54 164
HAP49_RS10005 2096877 .. 2096912 -  -4.6  -3.33696   CCGTCCGCTAAGGAA    CGGCG-CTGGCATCA ACAGGTA TGGCGCCTGACGCCG    GCTTATTTGTAGCTA  50 28
HAP49_RS10000 NONE
HAP49_RS09995 2093548 .. 2093562 -  -2.7  -3.83323   CTGAGATAAGTTAAA               CGGGC TAACG GCACG               GGGCGCTGAGCCGCT  54 15
HAP49_RS09990 NONE
HAP49_RS09985 NONE
HAP49_RS09980 2090132 .. 2090145 -  -3.1  -3.26471   CCATCTTTATATCAA               CT-CGC CGG GCGGAG               TGATCACCAGCGGGT  46 405
HAP49_RS09940 NONE
        ygjK 2079054 .. 2079091 - -11.2   -3.9712   CGATCCGATCATAAA   CGCGGGCCACCGCC GGGCAACGAT GGCGGTGGCCGCCG    CGGCTTATTGCGTGA  86 30
        metQ 2076477 .. 2076495 -  -4.4   -2.8552   CGCCAGGCATCAAAT             TCCCGCCA TGC TGGCGCGC             GGCGCGGGCTCGGTG  44 438
HAP49_RS09890 2070022 .. 2070035 -  -2.3  -3.18582   TATTCTAGCGAGGAA               TGCGG CAAG CTGCA                GTTACCGGCAGCAGG  44 92
        dcuS NONE
        dcuR 2067403 .. 2067418 -  -4.6  -4.93296   GGAGTACCAGAAAAA              GCGCGA CGCA TTGCGC               CACAAGGTGTGGAAT  80 258
HAP49_RS09855 2063918 .. 2063949 -  -7.9  -3.88464   CCAAAAATACGGAAA      GCGCCGACCGAAC GGAGAG GCTCAGCCGGAGC       TTTGATTAATTAAAA  69 45
HAP49_RS09850 2063588 .. 2063602 -  -2.7  -4.13767   TTGGCTATGTGAAAA               CGGCC GTGAT GGACG               CCAGGCAGGTTAAGG  59 99
HAP49_RS09820 2059666 .. 2059682 - -15.1  -5.10497   AAGTGACGCAAAAAA              CCCGCCG TAA CGGCGGG              TTTTTCTATTTAGCC 100 31
HAP49_RS09805 2057093 .. 2057114 -  -6.5  -3.59262   CCGCATATGCGTAAA           GGCGGGTAA GGTC TCAGCCGCC            GAGCGTATCCACCAA  62 17
HAP49_RS09795 NONE
        exoX 2054839 .. 2054860 - -18.7  -3.06737   GAGTAACGGCGAACA           GCGGGCGGC CTGC GCCGCCCGC            TGTGCTAGCCAATCA 100 30
HAP49_RS09755 2047361 .. 2047380 -   -10  -5.82316   ATCATGCAAAAAAAA            GCCTGGAC GCGA ATCCAGGC             TTTCTCTTTGAATTT 100 40
HAP49_RS09750 2046798 .. 2046817 -   -10  -5.38047   TATGCATACAAAAAA            GCCTGAAC TTTC GCTCAGGC             TTTCTCGTTAGAATA 100 41
HAP49_RS09745 2046637 .. 2046656 -  -3.5    -5.252   TATGGGGATAAAAAA            GCCTGAA TTTGCG TTCGGGC             TTTTTTGTATGGCGG  82 35
        sdeA 2044742 .. 2044752 -  -2.4  -4.20883   GAAAAAGCGGGAAAA                 GTCC ATG GGTC                 AGAAGTCTCTGCTGG  57 45
        sdeB 2041563 .. 2041581 -   -16  -5.26316   GGAGCGCATAAAAAA             GGTCGGGC ATT GCCCGACC             TTTTTGCATTTCAGG 100 48
HAP49_RS09680 2033176 .. 2033211 -  -3.2  -3.53091   ACCGCGCTGGGCAAA    TCGCTGCGGCCAACG CTGGACT CGCTGGCCG-AGTGG    ATGCGTCGGCATGCG  49 58
HAP49_RS09670 2031544 .. 2031556 -  -3.3  -3.53811   GCGACGTGGCCGAAA                TCGGC ACC GCCTA                CCATACGCTGACGCC  51 490
        mntR NONE
HAP49_RS09655 2029563 .. 2029580 - -12.7  -3.18582   CAGGGGAGTTACCAA             GGGAGGC GAAA GCCTCCC              TTTTTTATTGCCTGC  81 43
HAP49_RS09580 2016423 .. 2016434 -  -4.4  -3.55444   CGGCCACCGGCGAAA                CGAT GCGC ATCG                 AAGCGCCGATGGACG  53 97
         rne 2011617 .. 2011631 - -12.8  -5.49234   ACAGGCAAGAAAAAA               CCCGCC GAT GGCGGG               TTTTTTTAGGGGTGC 100 49
        pyrC 2009974 .. 2010028 -  -5.7  -3.42503   CTTCAACACGCATAA TTGCCCCCG-AAGCGATTTACTGTTT ATTT ATACAGTTAGCCGAGTGCGGGGGCAA GAGGGCGAAGCAAAA  57 44
        dinI 2009694 .. 2009713 -  -9.2  -5.72622   GCCAGAAACAAAAAA            GCCGGAGA GCGA CCCCCGGC             AAAAACAGCATTGCA 100 44
HAP49_RS09550 2009148 .. 2009164 -  -2.9  -2.80195   ATTGAGTAGTAACTA              CCGTGAG TGA CTAACGA              GGATCAATGCGGCTC  41 184
        bssS 2008822 .. 2008845 - -13.8  -5.34381   AAAGGCAAAGAAAAA          GGCGCCGGGA ACGG TCACGGCGCC           TTAGGGTTAGGGGAC 100 47
        solA 2007474 .. 2007486 -  -2.7  -3.60792   TGTTCAATTCGGAAA                TTCAA ATG CTGAA                TGCAAGAAATTTCCG  49 151
HAP49_RS09535 2006745 .. 2006762 - -12.7  -5.24531   AGCGGCGATAAAAAA             GCCTGCG TTAT CGCAGGC              TTGATGTTATACCGC 100 32
HAP49_RS09530 NONE
HAP49_RS09525 2005314 .. 2005327 -  -3.1  -3.72893   CAGGTTTCTATGAAA               TGGAC GCAG ATCCA                CTAACATTCAGCACA  52 205
HAP49_RS09510 NONE
HAP49_RS09505 2001381 .. 2001400 - -12.8  -3.62849   CTGAGGAAATGAGAA            GCCCGGCC GCCA AGCCGGGC             TTTTTTTTATTTCTC  83 32
HAP49_RS09490 1998813 .. 1998827 - -12.8   -5.4833   GCACGCAATAAAAAA               CCCGCC GGC GGCGGG               TTGGTTTTATCAGTA 100 35
HAP49_RS09485 1998415 .. 1998443 -  -5.2   -2.7264   AAATGGCGTTTAAAC        CTTATTCCGCGC TTAGC GCGCGGAATTTA        CAGCGTTTTATAAGC  48 33
        mdtG 1996556 .. 1996576 -  -7.6  -4.63932   GATTTCCCAATAAAA           GGCGCTGCA AGGC TGCAGC-CC            GTACTGTGGTATGTA  82 462
HAP49_RS09475 1994940 .. 1994958 - -13.1  -5.64274   GCAGGCATAAAAAAA             CCGGCGC ATCGA GCGCCGG             TTTGCGAGATAAAAC 100 51
HAP49_RS09450 1992065 .. 1992077 -  -3.3  -4.43208   ATAGCGGCAAAGAAA                TGAGC GGC GCGCA                GCTGTGGCGCTTATT  67 385
HAP49_RS09440 NONE
HAP49_RS09435 1989185 .. 1989205 -    -6  -3.29144   GCAGTTGCCGCACAA            CCCGCTGG CGCAC CCTACGGG            CCGGCGTTAATTGCT  55 451
        mdoC 1983672 .. 1983701 - -10.8  -2.75727   GCAATATGACAGAAG       CCCCCTGCAAAC GGTCGG GTTTACAGGGGA        AAGGTTATTGCGGTT  69 30
HAP49_RS09410 1983131 .. 1983160 - -17.3  -4.65895   TGGCTGAGGGAAAAA       CCATTAAGCCCGC GCCG GCAGGCTTAATGG        TTTGCAGGCGCGGTA 100 44
HAP49_RS09405 1980765 .. 1980776 -  -7.2  -5.93809   GCCCCATAAAAAAAA                CCGC CGCG GCGG                 TTTTTTTTATGTCTG 100 424
HAP49_RS09380 NONE
        macB NONE
HAP49_RS09370 1973617 .. 1973638 - -10.1  -5.40072   TCGTCGCTAAAAAAA           CGCCTGACC AACT GGCCAGGCA            GTTTGGATTAGGGCG 100 33
        proP 1971699 .. 1971716 - -12.7  -5.41359   AATCAAAGTAAAAAA             GCCACCC AAAC GGGTGGC              TTTCAGCGGTGATCA 100 38
HAP49_RS09360 1971400 .. 1971410 -  -2.4  -3.05224   ACAGTCTCGGAAAAT                 GGCG TAA CGTC                 TATCAATCATAGCCG  42 71
HAP49_RS09355 1971057 .. 1971070 -  -9.5  -5.31275   TTTTAGGATAAAAAA               CCGCC GCCC GGCGG                TTTTTTGTTGCTTAC 100 37
HAP49_RS09335 1967657 .. 1967681 -  -2.7    -5.093   TTGAAAAGAACAAAA          CGAAGTGGGTG AAT CACCGGCTTTG          GCCTGAAAAGGCAAA  76 398
HAP49_RS09300 1962718 .. 1962744 -  -8.7  -4.08216   GCAGCGTGGTGAAAA         GCAGACCCACA AGAAG TGCGGGTCTGG         GGCGCAACGCTTACT  77 36
HAP49_RS09295 1962169 .. 1962202 - -12.5  -3.53444   GTATTTGGCGTGAAA     CCAGCG-GCAGCGT GCCGATG ACGCTGCGCGCCGG     TGAAAGCCGCTATCT  76 113
HAP49_RS09280 1960068 .. 1960078 -  -4.6  -4.11216   CGGGCAGCGGGAAAA                 GGCA GAG CGCC                 TGGCGGCGCAGCGGC  65 398
HAP49_RS09255 1955406 .. 1955427 -  -3.7  -4.41895   AAGTGTTAATGAAAA           GTGAATCTT TGGT AAGGCTCAC            CGACAGATTGACCGG  69 175
HAP49_RS09245 1954418 .. 1954443 -  -3.9  -3.06418   CCGGTAGATAAAGCA         TGA-TGCCCGGC ATG GCCGGGCGGTGA         AGGCGTCACAGGCCG  46 31
HAP49_RS09240 NONE
HAP49_RS09235 NONE
HAP49_RS09230 1950091 .. 1950127 -  -7.2  -2.57931   CTCAGGCTGGATAAG   CCTCT-CCCCGCGCCGG GTTG CTGGCGCGGGGCATAAA    TCCAGCGTTAATCGC  55 33
HAP49_RS09210 NONE
HAP49_RS09205 NONE
        hemA NONE
HAP49_RS09195 1942413 .. 1942437 -  -5.6  -2.90992   AACGTTCGTAAAGCA          CCGGCGGTGA TTCAC TCATCGCTGG          CCTCCCCGCGGAAAA  49 12
HAP49_RS09190 1941684 .. 1941705 - -14.5  -3.74749   AGGACAAACGGGAAA           TGCCGGTTC AGGC GAACCGGCA            GGGGCATTATCGACG  93 32
HAP49_RS09185 NONE
HAP49_RS09180 1940376 .. 1940394 -  -7.3  -5.10077   AAATAGGCGAAAAAA             TCCCCGC AGGGG GCGGGGT             CAATGGCTTCTCATT  91 109
HAP49_RS09170 1938364 .. 1938376 -  -4.1  -3.64049   TCAATAAGGGTTAAA                TAACG CGC CGCTA                TCCGGCGATCTCCGC  52 23
HAP49_RS09165 1937582 .. 1937598 -  -5.1  -3.96298   GACCCACCAACCAAA              TCAGCGT GTT ACGCTTA              GACTTTTCTTCGTTT  61 223
        cycA 1935721 .. 1935740 -   -15  -4.86385   AGGCGTAAAAAGAAA            GGGGCGGA GAGA TCCGCCCC             TTTTTGCATCACGCG 100 34
HAP49_RS09145 1934106 .. 1934130 -  -4.9  -2.87026   GACAGCGACACGACA         TCCGCC-GCC GGCGCG GGCTGGCGGG          CAGTCAGAGGGCGAC  47 29
HAP49_RS09140 1933169 .. 1933189 -  -5.3  -4.18018   GCTGTTCAGTGAAAA            GGTTGGGCC GGT GTGCCAACC            CGAGGCGTTGGCAAG  65 385
HAP49_RS09130 NONE
        wrbA 1931111 .. 1931126 -    -6  -4.18465   GCGCAAAAAACAGAA              CGCCCG TCCT CGGGCT               GAAAGCGGATGAGCG  68 177
HAP49_RS09120 1930697 .. 1930715 - -12.4  -5.27335   CGGCGGAAATAAAAA             CGGCGTCC AAC AGACGCCG             TTTCAAAGGGGGTTA 100 38
HAP49_RS09115 1929676 .. 1929703 - -14.8  -4.07568   GGCCGCCGCGCAAAA        GGCGCTGACGGA ATAA TCCGCCGGCGCC         CGCGTGAAGAATAAA 100 63
        soxR 1924610 .. 1924625 -  -2.5  -5.75342   CTGTCTGAAAAAAAA              CATCG GTCTTA CGACG               TTCGTTGAGGCAATA  95 296
        yccA 1916373 .. 1916390 - -14.1  -5.04249   GCCGCAAAAAACAAA             GCCCCGC CGGA GCGGGGC              CTGGAAGGCATGCGC 100 50
        tusE 1915941 .. 1915970 -  -9.9  -3.05816   GCATTCGCTATTGAA       TGCTCGCCTGCAGC GGC GCTGCGGGCG-GCG       CGGTCAGATGCATTT  68 29
        rlmI 1914337 .. 1914364 -    -7  -4.06419   CCTCCTGAGAAACAA        TGCCTTGCTC ATATATGG GGGCAAGGCA         GCGCATTTCAAGTTA  69 38
        hspQ 1913948 .. 1913970 - -11.9  -5.95539   CGCTAAATAAAAAAA           GGGCCTGGC GCGAT GCCGGGCCC           TCTCGGGGTTTCTCA 100 54
HAP49_RS09025 1912571 .. 1912594 -  -8.9  -4.70613   AAAATGCGAAGAAAA          GGCGCCTTT GCGGGG AAAGACGCC           GGGAGGGATCAGCGA  90 34
HAP49_RS09020 1911508 .. 1911527 -  -2.8  -5.06451   CACCAGCTGAAAAAA            CCGCTCAA CAGC CTGAGCAA             GGGCAATAAAAAGTC  78 518
HAP49_RS09010 1909294 .. 1909307 -  -3.8  -5.35459   AGAGAGCACAAAAAA               CTCC TCAAAC GGAG                AAAAAATTAACGCTG  82 32
        yccS 1906944 .. 1906957 -  -2.3  -3.54424   CTGCATGGCGCCAAA               CGTAG CTAT CTTCG                CCTGCTGCAACAGCA  49 220
        sulA 1905622 .. 1905636 -  -2.2   -3.0395   ACATATTTGCTAACA               TTCTTA GCC TAAAAA               AGCGGCGATCCATCG  42 144
        ompA 1904282 .. 1904297 - -11.8  -5.88471   GAGGACGAAAAAAAA              CCCCGC ATTG GCGGGG               TTTTTTATTAGGCGA 100 47
HAP49_RS08980 NONE
        fabA 1901137 .. 1901161 - -18.7  -4.68511   GGTAATAGAAAGAAA          TGCCATCACGC TGG GCGTGATGGCA          TGCGAAGAGCATTAG 100 76
HAP49_RS08970 NONE
        fabF 1899050 .. 1899068 -   -16  -4.03546   AAATAAAAGGAATAA             CCTCCGCC CTT GGCGGAGG             TTTTTGTTTGTGCCG 100 42
HAP49_RS08930 1889603 .. 1889624 -  -8.7  -3.29144   GGAGGCCGGGGATAA           CGCCAGC CTGTGCCT GCTGGCG            CAAAATCAGCTGACT  60 158
        ssuE NONE
HAP49_RS08910 NONE
        ssuD NONE
        ssuC NONE
        ssuB 1883412 .. 1883431 -   -15  -3.35197   CGCTAGAGATATCAA            GGGACGGC CTGG GCCGTCCC             TTTTTCATTCATTCA  91 38
HAP49_RS08885 1878656 .. 1878667 -  -2.2  -2.95308   GAGAGGAAAAAAAGC                CAGA TATG CCTG                 TAAGGTGAATGACTT  41 90
        pncB 1877224 .. 1877246 - -11.9  -5.98675   GATAAAAACAAAAAA           GCCGGCGCG TGAAC CGGGCCGGC           TTTCTCTCTTTATAT 100 50
        asnS 1875586 .. 1875615 -  -5.7  -5.27779   GTCAATATTAAAAAA       TGCGAAAGGCCAGC GAG GCTGGCCTTT-GTT       TTGTAACGAAATCGT  90 65
        ompC 1874165 .. 1874180 - -10.4   -5.4433   AGACACAAATAAAAA              CAGGGC CGAA GCCCTG               TTTTTTTAACTTAGC 100 71
HAP49_RS08865 1872741 .. 1872757 - -10.8  -3.61652   GGCCGAAATAATCAA              GGGCGC ATAGA GCGCCC              TTTTTTTATGATTTA  77 58
        elyC 1860775 .. 1860790 -  -3.2  -3.58343   CGCAGCATGCTGAAA              GATCCC AAAA GCGATC               AACTGCTGGCGATGC  51 293
HAP49_RS08790 1854665 .. 1854679 -  -7.8  -2.50492   GATCATCAGGAATAT               CAGCAG GAA CCGCTG               GCGGCGTTGGTTAAT  50 196
HAP49_RS08740 1840568 .. 1840587 - -10.7   -4.4267   CCGCAAAATTGAAAA            CGCCGCA ACGGAG TGCGGCG             TTTGGCAACAGGGGT  89 73
        focA NONE
        pflB 1836918 .. 1836936 - -13.8  -4.37092   AGCGGTGGGAGAAAA             GGGCCGGC AGA ACCGGCCC             TGACGTTGCTACCGA 100 65
        pflA 1835917 .. 1835931 - -11.4  -5.67063   CTGAGCATAAAAAAA               CCGGCT ATG AGCCGG               TTTTTCTTTGGCGCT 100 48
HAP49_RS08715 1834193 .. 1834206 -  -9.5  -5.33785   AATCACTAGAAAAAA               GCGCC TGCG GGCGC                TTTTTTTATGTCGAG 100 44
        trxB 1824669 .. 1824684 - -10.4  -6.02919   CCAGAAACAAAAAAA              GCGGCT CGAG AGCCGC               TTTTTGCCGATGATG 100 49
        cydD NONE
        cydC NONE
         aat NONE
        infA 1819696 .. 1819713 - -11.3  -5.30616   TCAGGCAAAGAAAAA             GCGATGC TTCG GCATCGC              TTTTTTTATGGGTGA 100 192
        cspD 1816398 .. 1816420 -  -9.8  -5.35222   AAAAGGCATAAAAAA           TGCCAGTCAC ACG GCGGCTGGCA           TTTTTATCGCAGTCA 100 73
HAP49_RS08635 1811881 .. 1811898 -  -9.1  -3.55453   CATGAAGACAACGAA             CGCGATC GGCT GACCGCG              CTGCCGGCGCCGGAC  68 298
HAP49_RS08625 1809375 .. 1809410 -  -7.4  -2.73364   TGCGGATGGGAATGA    TTACGCTTTGGGGGCC AGGC GGCCCCCAGGGGGAAA     GGATCAGGAGAACAG  56 29
         hcp 1807548 .. 1807568 - -10.3  -5.44119   GGTACCTCAAAAAAA            GGGGCCGGC GCA GGCAGCCCC            ATAACGTAATGGCAT 100 40
         hcr 1806500 .. 1806520 - -16.9  -2.91395   AGCTTGCCGATAAAT            GCCCCATCG CGG CGATGGGGC            CAGGGGATCACGCCA  95 33
        poxB 1804562 .. 1804583 -  -9.5  -4.36931   TAAGCGAGAGGAAAA           GGGTACATG GCAT CATATACCC            TTTATTTTACCGGGG  87 49
        ltaE 1803491 .. 1803508 - -12.7  -3.17146   GCGGGCGATAAGAGA             CTCCCGG CGCA CCGGGAG              GGGAAATCAGGCGTG  79 32
HAP49_RS08590 1799770 .. 1799782 -  -5.5  -3.34398   TTGTGCGGTGAAAGA                GTCGC AGA ACGAC                AGGATGCCAAATTCA  54 486
HAP49_RS08580 1798299 .. 1798312 -  -5.9  -3.02745   TTGATCGACAAATGA               GCGCC GTTC AGCGC                TGTTGGCGGTCCAGA  53 19
HAP49_RS08575 1796825 .. 1796835 -  -2.4  -3.60627   GCACCGCAGCGCAAA                 CAGG ATC CCGG                 CCCGCTGTTCCCCTG  49 327
HAP49_RS08565 1794328 .. 1794343 -  -6.8  -3.57406   CGCTTACGAGAAAGA              GCTGCGC AAG GCGC-GC              CTGATCGCGTTCGAA  59 229
HAP49_RS08555 1793326 .. 1793343 -  -4.7  -3.21036   GATTAGCACAAGATA             CCGCGAC TCAA GCCGAGG              GAGGGGATTTGTGGC  50 150
        artP NONE
        artJ NONE
        artQ NONE
        artM 1790282 .. 1790301 - -12.1  -5.67063   TTGAGGATAAAAAAA            GCCCCGC ACAATG GCGGGGC             TCATGGGGGCGGCGG 100 43
        artJ 1789350 .. 1789376 - -11.6  -2.90075   GGGGTGGCAATTAGA         TGGAGCCGCC GAAGGAG GGCGACTCCA         CACGCGGACTTACTG  73 35
HAP49_RS08525 NONE
HAP49_RS08520 1788425 .. 1788448 -    -8  -2.94144   CCGGCATCGAAATCA          GCGCGGAGGC GATC GCCTGTGCGC           GCCAGTCGGCGCAGC  53 336
HAP49_RS08470 1779965 .. 1779979 -  -8.5   -5.7946   GCGGCAATAAAAAAA               GGCGC ATTAA GCGCC               TTTTTGCCGTTCAAA 100 44
HAP49_RS08460 1777137 .. 1777169 - -12.1  -4.74103   TTGTTAATGTAAAAA      GAAAAGCAAGGCACC GTA GGTGTCTTGCTTTTT      TTGATATTAAGATAT 100 443
HAP49_RS08435 NONE
        ybjG 1773263 .. 1773282 -   -15  -2.71712   GGCGTGGTGTGAAAG            CAGGGGCG GTAA CGCCCCTG             TCATGTTATGCGGTT  84 39
HAP49_RS08420 1771437 .. 1771487 - -21.3  -3.81488   CGGCGCTAAACAGAA CGATGCGGGGCAATATCGGGCCGC ATCA ACCGCCCG-TATTGTCCCGCATCG GAGTGTATTGGCTAT 100 63
        deoR 1770455 .. 1770466 -  -4.4  -4.61482   CCTGCGAAAAAATAA                TCAC GCGG GTGA                 GCTGTTGCATTTTAT  70 167
HAP49_RS08410 NONE
HAP49_RS08405 1766819 .. 1766848 - -17.9  -2.78996   GATCGCTATTGAAAC       GGCGCCGGCCAAGT CAG ACC-GGCCGGCGCC       TTTAGTGCCTCGCCG 100 47
HAP49_RS08355 NONE
HAP49_RS08350 NONE
HAP49_RS08345 1755838 .. 1755858 - -12.6  -4.56597   GCGGTTCCTGAAAAA            GCCGCAAC CTTCC GTTGCGGC            TTTTTCATTTTCAGC 100 53
HAP49_RS08335 NONE
HAP49_RS08330 1751551 .. 1751570 - -12.1  -5.00616   GCCGGGCGTAAAAAA            GCCCGGC GCGTCG GCCGGGC             TGATCGAGCGCTGAT 100 48
HAP49_RS08315 1749485 .. 1749496 -  -5.8  -2.60212   TCAGCATGGGATAAC                TCCG TTAG CGGA                 TTAAAGACCCTTAAT  50 95
HAP49_RS08310 1748476 .. 1748502 -  -2.8  -4.56597   GCTGCCGGGTAAAAA         CTACGGCTGGCC GCT GGCCACCTATGG         CATCAACTATTCCGG  69 379
HAP49_RS08300 NONE
HAP49_RS08295 1746123 .. 1746159 -   -15  -3.05816   CGATGCTGTATTGAA    GCTGCGGGGCAGTCGG CGGAT CCGGCTGCCCCGCCGA    TCGTTTCTCCGGCGG  89 62
HAP49_RS08275 1741173 .. 1741189 -  -3.6  -3.57144   CGGTGTACGGCGAAA              CCGCAG GCACG CTGCGC              GAAGAGTCGCCGTTG  51 485
        hisL 1740448 .. 1740471 - -16.8  -6.38039   GAGCCAAAAAAAAAA          CCCTCGGAAG AAAT CTTCCGAGGG           CTCTCTCTTGCGTTC 100 70
        hisG NONE
        hisD NONE
        hisC NONE
        hisB NONE
        hisH NONE
        hisA NONE
        hisF 1733924 .. 1733937 -  -2.3  -2.78384   TGTTCTGTCAGCACA               CGCGA ATCT CCACG                CCTTGTTCGACCAGG  39 4
HAP49_RS08225 1733253 .. 1733277 - -12.1  -5.64274   TGAGCGATAAAAAAA          GCCGCCGAG GTTAACG CCCGGCGGC          TTTTTTATTGCGTGC 100 50
HAP49_RS08140 1704950 .. 1704973 -  -5.3  -4.72556   TTAAAAATGATAAAA          GCGAGAC TGTGTTTATC GTCTCGC           TTTTTTTTCGGCTTT  73 97
HAP49_RS08070 1688102 .. 1688120 - -17.4  -3.71672   CCCCAGTAAAAGGAA             GGCCGGGC GAT GCCCGGCC             TCGATGTTAAACCTC 100 32
HAP49_RS08045 1682451 .. 1682468 -  -9.8  -3.96216   GCGGCAGTGAAAGAA             CCCGGC TTAAGC GCCGGG              TTTTTTTATCGGATA  78 31
        metG 1679085 .. 1679104 - -11.4  -5.60993   TGGGGCATAAAAAAA            GGGCCGAG CAAG CTCGACCC             TCCCTATGCCACGCA 100 50
HAP49_RS08030 1677802 .. 1677824 -  -9.9  -4.64598   TAATTAGTTTAAAAA          CAGAGGCTGC GTCG GCAGCCTC-G           TCAAAAACAGCATTA 100 38
HAP49_RS08025 1676395 .. 1676412 -  -6.3  -4.05245   CATCATACAATTAAA             CTGTGAGC CAT GC-CACAG             ATCGCACCATGAATT  66 104
HAP49_RS08020 1675936 .. 1675952 -  -3.7  -2.84687   GCAACGACCACCAGA              TTTCATG GAT CATGAAT              TGTCCTCCGTGTCGT  44 18
HAP49_RS08015 1675224 .. 1675239 -  -4.7  -4.30396   AATGAAATACATAAA              TGCGA GACGTA TCGCA               AGTTTCACCCTATTC  66 39
         cdd NONE
HAP49_RS08005 1672274 .. 1672290 - -15.1  -5.24129   TTGCCGCACAAAAAA              GCCCGGC GGA GCCGGGC              TGGGTCATTTCAGCT 100 47
        sanA 1671356 .. 1671376 -   -14  -3.50492   CAGCACAGACGACAA            GGCCGGCA AAATA TGCCGGCC            TTTCTTTTTGGGGCA  89 48
HAP49_RS07960 1661935 .. 1661958 -  -3.8  -3.53012   TGGTTTTCTTTTAAA          TCAGGCGATA TCGC TAACGTCTGA           TAAATCGTTGGGGGT  52 2
HAP49_RS07955 NONE
        fghA 1659893 .. 1659915 - -19.2   -4.1822   CGGTATTTGAAGAAA           TCCGGGCGGT TTA ACCGCCCGGA           TTTTTTTATCAGCGG 100 34
        moeA NONE
        moeB 1649469 .. 1649505 -  -3.6  -4.81083   TGGAAGCAGGAAAAA   GACGA-CGAGCAGGCGG TGCG CAGCGTGCTGGGCCGTC    TGCTGTTCAGCCAGG  73 397
HAP49_RS07885 1647341 .. 1647362 -  -2.8   -2.5409   AGAATGGGTAAGTCA           GGCCGGGG GGAGCT CAACGGCC            GACATTTGCAGCGCG  40 1
HAP49_RS07880 1646712 .. 1646765 -  -6.8   -5.0538   CGGCAGTTGAAAAAA GTGGCGCTGGA-CAACGCCA--TGCCG GCT CGGCAGGCGGTGTTGCTGCAGCGCCAA GGCGCTTACCGCAGC  86 84
HAP49_RS07870 NONE
        cynS 1644605 .. 1644617 -  -6.9  -4.65895   TCGGGCAGTGAAAAA                CGCCA GGA CGGCG                TTTAAGCGCAGTTAA  79 103
HAP49_RS07860 1644163 .. 1644202 -  -4.1  -3.67775   ATCCTGATTCAATAA  CGCTG-TGCCGACCGGGC TGCCT GCCCGGCCGGTATCGATG  ATTAACGGTTATCCA  54 27
HAP49_RS07855 1643606 .. 1643626 - -16.1  -4.19704   GAACGGGACTGAAAA            CCGGCGCCA TGA CGGCGCCGG            CAACAGGGTTAGGCT 100 34
HAP49_RS07840 1641150 .. 1641166 - -15.1  -4.85599   CGTACCTGAGAAAAA              GCCCGCC GCC GGCGGGC              TTTCACCCGCTATTT 100 35
HAP49_RS07830 1639921 .. 1639940 -    -2   -4.2717   AGTATTGCAGTAAAA            CTACCCCG CCGC CGGGTTAC             ACCGTGAGGTCAAAA  57 22
HAP49_RS07825 1639123 .. 1639146 -   -16  -3.59981   TATGACAATGAAAGA          CGGGATGGCC CGGC GGCCACCCCG           TTTGACAATCAGGCC 100 34
        phoA 1637559 .. 1637580 -   -13  -4.51994   GTAACCAATAATAAA           TGGCCGCC GTTGCG GGCGGCCA            TCGTGCAGAAGGCGG 100 41
HAP49_RS07815 1635514 .. 1635530 - -10.8  -4.87892   GGGGAATAAAAGAAA              GGCCGC ATAAA GCGGCC              TTTTCAGTAGGAAGT 100 50
HAP49_RS07810 1634840 .. 1634865 - -16.3   -4.2074   TCGTCAATAGAGAAA         GGGTTCAGTTC TCGC GAACTGAACCC          TTTTTTGTGCCTTAT 100 51
HAP49_RS07785 NONE
HAP49_RS07780 1627960 .. 1627993 - -10.9  -2.52543   ACCTGGCGGAAGGGA     GGGGTTGCCGCGCGG CGTG CCGCGCAACAAGCCA      AGATGTTTATTTGCC  67 32
HAP49_RS07775 1625823 .. 1625865 -  -9.9  -3.58343   GTGAGCACGCCGAAA CCGCCTTCCACCCGTCCTGC TCGT GCAAGATGGGCG-AAGACGA GATGGCGGTGGTCGA  70 351
HAP49_RS07750 1619710 .. 1619730 - -16.9  -5.28778   AGCAGGCATAAAAAA            GGGCGTAGC CTG GCTACGCCC            TCTGGTTATTGATTG 100 45
HAP49_RS07725 NONE
HAP49_RS07720 1614697 .. 1614708 -  -7.2  -3.61398   GGGCTGGCGGAAGAA                CGCG GCAT CGCG                 CTGAGCTGCGAAGGG  62 420
HAP49_RS07705 NONE
HAP49_RS07700 NONE
HAP49_RS07695 1610799 .. 1610827 -  -5.2  -3.29074   CAAACAGATTATTAA       CCGCGAC-GGAGA GGCT CCTCCAGCCGCCG        ATGAGGCTTATGCGC  53 55
HAP49_RS07690 1609733 .. 1609769 - -13.5  -4.07568   CGTGTGCCGGGAAAA    CCGCTCCTGCGTCGGCG AAG CGGCGGCGCAGGCGCTG    CGCGGTCTGTTTATC  90 463
HAP49_RS07680 NONE
HAP49_RS07675 NONE
HAP49_RS07670 NONE
HAP49_RS07665 1605431 .. 1605444 -  -3.8  -3.36327   CGACGTTAGCGATAA               GGCT TCAGCC AGCC                GAGCCCGGCGGCGGT  50 2
HAP49_RS07660 NONE
HAP49_RS07655 1602924 .. 1602938 - -12.8  -3.01712   GCTTGCCGGTCAATA               CGCCGC TGT GCGGCG               TGGCATTGCTGAGCG  71 437
HAP49_RS07645 1601369 .. 1601384 - -10.4  -5.24129   CGCGCGGATAAAAAA              TCCGCC TTCG GGCGGA               TTTTTTTTATCTGTC 100 42
        rhtA 1599460 .. 1599495 - -12.5  -3.29856   GAGGAAAACAGTTAA    CCCGCCTGCATTCCG GCGTTG CGGACGGCAGGCGAG     TCAGGCGATCAAGAA  81 34
HAP49_RS07630 1598411 .. 1598422 -  -3.6  -4.11216   GCGGCAGCGGTAAAA                GCAC CCTG GCGC                 GTCAACTGGCGGAAC  61 507
         dps 1597449 .. 1597471 -   -17  -5.07652   TCGCGCAAAAGAAAA           CAGGCCGGGC AAA GCCCAGCCTG           CGCTGCCCGGAACGA 100 65
HAP49_RS07615 1596975 .. 1596985 -  -5.4  -3.21099   CGGGGCTATCATTAA                 CCAA ATT TTGG                 CTGTGAAACAACCGT  53 144
        glnH 1595966 .. 1595992 - -10.8  -4.43576   ATCAGATACAACAAA         GCGCAGGGGG TTAAGCG CCCCCTGTGC         TTAAGTTAATCGCTT  91 55
        glnP 1595265 .. 1595276 -  -4.4  -2.95448   TTAAATTCAATCACA                GGAT TTTC ATCC                 TTCTTTCCAGACGAC  47 9
        glnQ 1594501 .. 1594527 - -16.5  -3.90112   GCGTGCGGAATGAAA         GCGGCGGGCGC GTGGT GCGCCCGCCGT         TAAACCGCCAGGATC 100 39
        ybiO 1592107 .. 1592118 -  -7.2  -2.73875   CTCGGTGCAATACGA                CGCC TACC GGCG                 GGACGTGGCGGCCTT  52 77
HAP49_RS07560 1583231 .. 1583252 -  -4.4  -2.62735   ACAGGGGGGAGACGA           TC-AGCGCG TCGGG CGCGCCAGA           TCGAAACGGTGCTGT  44 4
HAP49_RS07555 1582753 .. 1582778 - -14.7  -5.80817   GCGAACATAAAAAAA         GCCCGCCGG GGTGATAG CCGGCGGGC          TTTTTGACGTCTGGG 100 48
HAP49_RS07550 1581829 .. 1581846 - -11.3  -4.77567   AGGCTGACAATAAAA             TCCACGC GGAA GCGTGGA              TTTTATTTAATGGTT 100 57
HAP49_RS07525 1575508 .. 1575554 -  -9.3  -4.07687   ATCTGGCGTGGAAAA CG-CTGCGATCCGGCAGCAGTC TGCA GGCTTCCGCCGGGTTGCAGGCG GTGCCGACGGCGCGC  76 334
        prpR NONE
HAP49_RS07490 1568163 .. 1568201 - -11.7  -3.31144   GCCGGAGGCCGACAA  GGCGCATCTGGCGGCG CTGAAATC CGCCGCC-GACGCGGC   CAAAAAAGAGAAGAA  72 78
        ompC 1563071 .. 1563090 - -12.8  -6.01725   AATAAAAACAAAAAA            GCCGGACG CAGC CGCCCGGC             GAAATAAAACTCTGG 100 89
HAP49_RS07460 NONE
HAP49_RS07455 1561211 .. 1561235 - -11.4  -3.03771   CGACATCCCGCAATA         CGCCCGCGCCA GCGA CGGCG-GGGCG          TTGGAGGCCACCTGC  66 65
HAP49_RS07435 1557828 .. 1557840 -  -3.3  -4.58685   AAACGTGGGCAAAAA                CCGGT GTT ACAGG                CGGGAAATCCGGTAG  64 19
HAP49_RS07430 1557159 .. 1557171 -  -3.3  -3.53012   TTCCGGCGGCTGAAA                GCCGT TCA ATGGC                CTTGCTGTTTCCACT  49 18
        yedA 1556096 .. 1556106 -  -5.4  -3.04652   GGGTGAAACAAGAAT                 CGTT TTT AACG                 GCGGCCCGCAGACCG  51 51
HAP49_RS07420 1555828 .. 1555840 -  -9.1  -2.62184   GCGCTTTTTACAGCA                GCGCT GCC AGCGC                TGGATGGACGATCAC  61 37
HAP49_RS07410 1554062 .. 1554086 -  -9.1  -2.73875   CGTGCTGGAACAGCA          GGCCGCCGCGC AGG GCGTGACGGCG          CTCTAGCCGCCGTTA  62 38
HAP49_RS07365 1545315 .. 1545337 - -12.7  -4.09864   ACCGACTCCTGAAAA           TACCCCGGC GCGAG GCCGGGGCA           AGGGGAATTATTTCA  91 33
HAP49_RS07360 NONE
HAP49_RS07355 1542764 .. 1542788 - -14.3  -4.21922   CGATTGAAAATGAAA          TGGCGCTCTCC CGT GGACAGCGCCA          TTAATTTATTACGTT 100 95
HAP49_RS07335 1538881 .. 1538895 -  -2.8  -2.91264   CTTGTGACTGAGACA               TCATGA CCT TCCTGA               TTGCGAGTGGGTGTG  42 93
HAP49_RS07330 NONE
HAP49_RS07325 NONE
HAP49_RS07320 1535948 .. 1535967 -  -7.8  -3.97834   CAACGGGACGATAAA            CCGGGC ATTCCGTG GCCCGG             CCTGTGGGATCTGCC  70 357
        sseA 1534473 .. 1534494 -  -4.4  -2.71791   ACTGGGTGCTGAAAG           GCCAGC TGGATCTGTC GCTGGC            GTGGGACGGCGGTTT  42 446
HAP49_RS07300 1533378 .. 1533392 -  -2.8  -3.40163   GATTATCAATATCAA               GTTTGA CTG TCAACC               CGCGGCGCAGTGTGG  47 7
HAP49_RS07295 1532011 .. 1532028 -  -5.7  -3.05715   AATCGCTCCAGTTAA             TTAAATC GTTC GATTTAA              CCATTATACGGTGCG  53 59
HAP49_RS07290 NONE
HAP49_RS07285 NONE
HAP49_RS07280 1530443 .. 1530457 -  -8.5  -3.38812   GTCTGTTGAACAATA               CGGCG GATTT CGCCG               GCACCGCGCGCAATG  60 457
HAP49_RS07195 1508288 .. 1508305 - -14.1  -4.78149   CTGATAACGGAAAAA             CGGGGGC CGAG GCCCCCG              TTCGTTATTTCAGGC 100 30
HAP49_RS07175 1504706 .. 1504724 - -17.4  -4.63218   GGCGGGGGAAGAAAA             CCGGCCGC AGG GCGGCCGG             CGAGATTGATGACAA 100 197
HAP49_RS07170 NONE
HAP49_RS07165 NONE
HAP49_RS07160 1501939 .. 1501960 - -15.1  -2.58758   ATAAGGTGTGACAAC           CGGCCCGGC TTTT ACCGGGCCG            CGTAACCCATTACTG  83 35
HAP49_RS07150 NONE
HAP49_RS07145 1500364 .. 1500379 - -11.8  -5.04868   TTAAAGCAAACAAAA              GGCGGC CTGA GCCGCC               CTTTTGCACGATTGC 100 52
        dapF 1499110 .. 1499126 -  -3.5  -3.60296   GATCTGCATGGCAAA              CCGTTCG CTG CGTTCGG              TTCGCTGGTGGGGAT  51 316
        amyA 1495114 .. 1495132 -  -4.6  -3.64371   AAGTTAGACCCGAAA             GGCAAA CATTAGT TTTGCC             GCCGCGTCATCATTA  54 56
HAP49_RS07120 NONE
HAP49_RS07110 1492858 .. 1492880 -  -6.2  -2.55074   CTGAATCCCAAGGCA           TGGCTGGC GTCGGTG GCCAGCCT           CGGCGCCTTTGTCGG  46 215
        lsrK 1489304 .. 1489321 - -14.1   -3.6682   CGGCAGTGAGTTAAA             GCGCGGC TTGC GCCGCGC              CGAGGGGAAAGGAAT  93 79
HAP49_RS07085 1487968 .. 1487991 -  -4.6  -2.78197   CTGCAGATAGATAAT          GATTAACACT GTTT AGCGCCAATC           GCGCCGGAGCGCAAG  45 4
HAP49_RS07080 1486993 .. 1487003 -  -3.2  -3.65812   TTGTTCGTAAGAGAA                 GCCA CTA TAGC                 CGGGGCGATCGGTTA  52 38
HAP49_RS07075 1486440 .. 1486452 -  -3.3  -2.87132   GTTTTTGGGGATATA                GGCCA TGG TGGTC                GTCCGTCGGGAATCA  42 73
HAP49_RS07070 1486064 .. 1486094 - -12.1  -3.20901   ATTTTATTAATTTAA       CAGCTTAATAAGT TAGTG ACTCATTAAGCTG       TTGTCGACATTATTT  79 35
HAP49_RS07065 NONE
HAP49_RS07060 1484860 .. 1484892 - -10.6  -3.53189   AACTCAAGATGATAA     CGGC--CCGCCGGC GTGGTCA GCCGGCGGCTGCCG     TGCGGTCAGAGTTTT  77 31
HAP49_RS07050 1483030 .. 1483053 - -18.2  -3.17075   TTTGTCTGAAGGGAA          TCTCCGGGCC TGAC GGCCCGGAGA           ATCTCACCAAAACAG 100 29
HAP49_RS07040 1480893 .. 1480923 - -10.3  -3.28712   GCTGTTCGTGGAGAA       CGGCGCGGACATC GTGCT GTTGCCGGCGCCG       GGCACCATTCCCGGC  66 310
HAP49_RS07020 1475614 .. 1475628 -  -7.8  -3.44801   TCGGACAAAAAATTA               CACCTG GTT CAGGCG               GCGCGCGCCTTCCAG  62 8
HAP49_RS07015 1474764 .. 1474799 -   -11  -3.57144   TGTTCGATCGCTAAA    CG-CGGCAGGGGGCGGC GGT GCCGCCCCCGTCCATCA    CTTCACCGTCACGTC  79 23
HAP49_RS07005 NONE
         map 1472452 .. 1472466 -  -3.6  -3.95852   AGGTTATCAATTAAA               TAACTT ATT AAGCTA               TCAGCTTGGTGGGCT  57 55
         dld 1470277 .. 1470294 -  -6.3  -2.78384   TGGCGGGCGAGCACA             CCGCCCAT TCG ATGGG-GG             TCAACGTCGCGCGCC  49 394
HAP49_RS06975 NONE
HAP49_RS06965 NONE
HAP49_RS06960 1464593 .. 1464603 -  -3.2  -3.97636   ATGGCAATCGATAAA                 TCAG TAA CCGA                 TTTCGCTATTGAACG  56 15
HAP49_RS06955 1463603 .. 1463621 - -11.8  -3.96148   CTCGTTCAGCATAAA             CGGCTATA GCT TATAGCCG             TTATGCAGCGGGGAG  86 41
HAP49_RS06950 1462653 .. 1462677 -  -5.7  -2.70419   ATGAAAGTGAAATAT          TGCGGATTC GTACGCA GAATCCGCC          TTGATGGTGGCCGAA  50 42
HAP49_RS06945 1461973 .. 1461992 - -10.7   -4.2349   GCTTGATAGGCAAAA            GCCCAGC TGGATG GCTGGGC             TTCGCAGGTCCCTGA  88 126
HAP49_RS06940 1460792 .. 1460825 -  -9.8  -3.53012   TGCCGCCGGGGTAAA     TCGGGTTTTCTTAT GGTGAG ATAAGAAAACCCTA      TGGGGTCGTCAACCG  74 34
HAP49_RS06935 1459960 .. 1459983 - -13.8  -4.31692   AAGGCATGATGAAAA          GTCTCGCCCC GGAA GGGGCGGGAC           GTATTAAGCGCATTA 100 225
HAP49_RS06915 1456883 .. 1456895 -  -6.2  -3.90048   TCGCCGCCAAAAAGA                CGCC CGTCT GGCG                AAGAACGACAGCGAA  64 78
HAP49_RS06895 1452912 .. 1452966 -    -3  -3.66999   ATGTAGTGAGCCAAA TCGGTCAT-TCCTTACTCCTTATGTG GCTGA CGCATAAGG-GCAAGTATACGCCCGA TCGCTAGCCTTGGGC  52 29
HAP49_RS06890 1452288 .. 1452326 -    -8  -3.28712   TCGCCCGTTGGACAA  GGCGGCGCGCG-AGCTG GTCGAG CTGATGCGCGCGGCGCC   GCAGGAAAGCTGACG  64 55
HAP49_RS06880 1450751 .. 1450764 -  -5.3  -5.30348   ATCGAAGAATAAAAA               GTGAT TAAA ATCAC                AAAATAATAATTACC  86 157
        ansP 1448970 .. 1448985 - -11.8  -5.94713   AGCGGATAAAAAAAA              CCGCCC CGGA GGGCGG               TTTGTCGATTCAGCG 100 35
HAP49_RS06865 1446803 .. 1446832 - -15.7  -2.77899   TTTCGGCATGAAGTA       CGGCCTGCCGGCGA TCG TCGCCGGC-GGCGG       CGGGGCAGTGGTGAA  78 356
         pyk 1444675 .. 1444693 -  -3.1  -2.95717   ACCAGATAGAACAAC             GCATGAT TATCC ATCAGGC             CACCTCTTCTTTCCG  42 20
HAP49_RS06850 NONE
HAP49_RS06845 1442955 .. 1442974 -  -4.3  -3.16881   GATCGAGCGCATCAA            CGATCGTC ATGGA GACGA-CG            GCTGGTTCGACGCGT  47 65
HAP49_RS06835 1441494 .. 1441510 -  -9.3  -4.68705   AGAATCGCAATAAAA              GGGCGCC GCT GGCGCCG              TCAACGCTCCAAATC  90 26
HAP49_RS06830 NONE
HAP49_RS06825 NONE
        uhpC NONE
HAP49_RS06815 1436735 .. 1436762 -  -3.5  -3.50393   GTGTATGTGACATAA        GTTT-CCCGG ATGTTCAGG CCGGGCAAAC        CGTGAGGCTTACCCG  52 63
HAP49_RS06810 NONE
        fbpC 1433422 .. 1433443 -  -4.3   -4.2793   ATTTAAATAAAAATA           TCACCCTGA GTGG TCTGGGTGG            TTATTTTTGAGTGGG  66 178
HAP49_RS06800 1433045 .. 1433067 - -12.1  -4.13767   TGCCGTAGCTGAAAA           TAAACCCGC GCGCG GCGGGTTTA           TTTAAATCGGTATTA  95 41
        cecR 1428578 .. 1428597 -  -4.2  -2.52464   CCCTGCCTGAATTTA            CGCGCC GTGACGTT GGCGCA             GCCCAATAACCAAAA  44 3
        hlyD NONE
HAP49_RS06770 NONE
HAP49_RS06765 1424651 .. 1424663 -  -3.3  -3.09135   ATAAGCGTCAACAGA                CGGTG AAA CATCG                CTCTTTCTCCTTAAT  44 36
HAP49_RS06760 1423527 .. 1423549 - -12.1  -4.72272   TCTGGCGATCAAAAA           GCTCTGCAT GTGAT ATGCAGAGC           TTTTTTTATGCGATC 100 31
        yvcK 1418363 .. 1418385 -  -3.2  -3.39286   ACACCAGTCTAAAGA           CCCGCTGCAC GGC GTGACGCTGG           AGCAACTGCTGAATA  46 253
HAP49_RS06710 1414382 .. 1414396 - -11.4  -2.74782   ATAAACTCTCAATGA               GGGAGC TTT GCTCCC               TCATCCTCTGTCCTG  71 26
        bioA 1409405 .. 1409425 -  -6.8  -3.21912   TTGGTAAGGCATTAA           CGC-GCGGC GGCG GCCACGGCG            GCGGTCAGGCGGCTG  58 1
        dmeF 1407633 .. 1407643 -  -3.2  -4.61873   CTGTACAAACGAAAA                 GCCA TAA TGAC                 TCCCAGTTGCGATAA  66 52
HAP49_RS06665 1407116 .. 1407136 -  -9.7  -3.60805   AGACTCGAGTGGAAA            GCGCGGT GCGGTTG ACCGCGC            TTTTTTATTGGCGGG  74 44
HAP49_RS06655 1403375 .. 1403400 -  -3.9  -2.97408   TCTGATGCAAACAAT         TCGGCCTGC CTGCTATC GCCGACCGA          TGACTTATTTGGACG  45 30
HAP49_RS06650 1402463 .. 1402483 - -12.5  -2.53015   AGAGCCGCTAAGGCA            GGCCCTCCC GGC GGGAGGGCG            AAAAGATTACAGCAC  75 32
        modE 1392748 .. 1392764 -  -6.5   -5.1963   GTCAATCAACAAAAA              TGCAACG TTA CGTTGCG              CTTAACACAACGTGG  91 27
        modF 1391108 .. 1391138 -  -5.4  -4.56597   TGGCGTCTCCAAAAA       TGGCCTTCTTCCTT TCT ATGATAAAAGGCCA       AATGTGATGTGCTGC  71 75
HAP49_RS06590 NONE
HAP49_RS06585 1389352 .. 1389362 -  -8.2  -2.83519   CGCAGAAAGATAGCA                 CGCC CGC GGCG                 GTAAAAAGGTGATCT  59 199
        galT NONE
        galK NONE
        galM 1385980 .. 1386003 - -11.6  -2.51259   CATTTATAACAAATT          GCCCCCGGCC GCAC GGCGAGGGGC           GTAGCGGGTCAGATA  70 34
HAP49_RS06565 1385423 .. 1385452 - -12.9  -3.89614   CGGAAGGGGGAGAAA       CGGCACGTC-GGAA TCG CTCCGGACGCGCCG       TGGCGTAGGGAAAAT  87 40
        gpmA 1384456 .. 1384477 - -17.3  -5.52023   AGCAGCAATAAAAAA           GCCCCCGGT GAAA ACCGGGGGC            TTTTTCGTGAACGGG 100 46
HAP49_RS06540 NONE
HAP49_RS06535 NONE
        zitB 1375890 .. 1375912 - -16.3  -2.85545   TCCGTAATAACAGCA           GAGGGCGCC GTGAT GGCGCCCTC           TTGGCTTAGTGGCGA  91 31
HAP49_RS06415 1360400 .. 1360420 -  -3.9  -3.58037   TATGAAGCGGTGAAA            CAAACCACC GAT GCCGGTCTG            GGCCAGTCCACCTGC  53 461
HAP49_RS06370 1348959 .. 1348978 - -16.4  -6.00814   AATAACCAAAAAAAA            CGCCGCCC GAAA GGGCGGCG             CTGTGCGTTTCAGCC 100 52
HAP49_RS06305 1338115 .. 1338130 -  -3.2  -2.66962   CGATCAGTAAAAAGG              CTGAAG CCGC CATCAG               AAATCCTCCGCGTTA  40 22
        kdpA NONE
        kdpB NONE
        kdpC 1333710 .. 1333731 - -10.1  -4.90266   GTTACCAAGCAAAAA           GGGGTTCGG CATG CCGAACCCT            ATCACTATGCTGAAT 100 49
        kdbD NONE
        kdpE 1330170 .. 1330192 -  -2.6  -4.21462   AGTGATGATCGAAAA           CCGCAAACAC CCG GTGTTCGCTC           CGCTGCGCGAGGCGT  59 112
        ybfF 1325640 .. 1325651 -  -3.6   -4.7254   AGTTTGCATCAAAAA                GCGC TCGC ACGC                 TTCCGGAGGCATCGG  68 235
        ybfE 1325143 .. 1325174 -  -3.6  -3.06162   GATGCCATGGCAAGA      GCCTTTCGCCAC GGTGGCGG GCGCCGACAGGC       GCAGTCTCTTACCGG  46 168
        fldA 1324379 .. 1324390 -  -2.2  -3.89822   GATGGATGGGATAAA                CCGA TATC TCAG                 TCTACCGTGACGGGG  53 157
         fur 1323707 .. 1323725 - -14.6  -5.60993   GCGGGCATAAAAAAA             CCGCCTCA ATG TGAGGCGG             TTTCTCATAGCCGGT 100 46
        nagB NONE
        nagA 1312242 .. 1312261 -    -5  -3.93288   GTTCATTGAATTAAA            CCTCGTTA CCGT TAACGAGC             GTTTTGGTGATCTTG  61 1
HAP49_RS06200 1310971 .. 1310987 -  -2.2   -3.2059   AGTGACGATAACACA             CCTGCCA GAAG CGGC-GG              ATCAGCTTTCCAGCA  44 27
HAP49_RS06195 1310141 .. 1310160 -   -15  -4.12296   GGGAGAAGGAAATAA            TGGCGGCC GGGC GGCCGCCA             TGGCCGCATCAGAAG 100 34
HAP49_RS06190 NONE
        asnB 1306544 .. 1306563 - -16.4  -5.17507   AAAAGGCAACAAAAA            GGCGGGCC AAGA GGCCCGCC             CCAAGGGAAAACGCC 100 47
HAP49_RS06180 NONE
HAP49_RS06175 NONE
HAP49_RS06170 1306010 .. 1306042 -  -2.5  -4.72272   TGCCGGTATCAAAAA      CCGGTGCCTTACCGC TTG GCGATACCCCACCTG      CAAACAAATCTTATG  65 66
HAP49_RS06165 NONE
HAP49_RS06160 NONE
HAP49_RS06155 1305740 .. 1305755 - -11.8  -4.84527   GCCAGACAGCAAAAA              GCCCGC CGAA GCGGGC               TTTTCTAAATATGGC 100 37
        miaB 1302797 .. 1302824 -  -6.8  -4.97159   AAAAATAAAAAAGAA        CATCACCGAGCG CGGG CGCCCGGCGGAG         AAACGGTAAGGAGTA  86 77
HAP49_RS06140 1302371 .. 1302396 - -14.7   -5.3671   AAGACAAGGAAAAAA         CGCGGCGGG GCGCAAAG CCCGCCGCG          TCATCACAGGACAAG 100 52
HAP49_RS06135 1301125 .. 1301140 -    -4  -3.13773   CTGCAGATCCAAAAT              CACC-TG ACT CATGGTG              TCTCCTGCTCGGAGG  46 18
        ybeY 1300613 .. 1300632 -   -10  -3.12999   TCATGTCAGAGTTAA            GGGGC-GTC AGC GACAGCCCC            GCAGAGGGGCTGTAG  68 56
        corC NONE
         lnt 1297957 .. 1297972 -  -2.5  -4.72631   ATCAATGCAACAAAA              CGTCGG CGCAC CCG-CG              CGGTGCGCTTAATGC  65 215
HAP49_RS06115 1296780 .. 1296804 -  -9.3  -4.07568   GCGCCTTGGGGAAAA          TGAGGGAGG GGAACGG CCCCCCTCA          TTCCTGTCTGTCCCA  77 92
HAP49_RS06110 NONE
        gltK NONE
HAP49_RS06100 1294486 .. 1294509 - -18.2  -4.37092   AGTGCCGGGAGAAAA          GATGCGCCCC TGGC GGGGCGCATC           GAGAGCGTTTAGTGC 100 34
        rihA 1293447 .. 1293464 - -14.1  -2.80411   AAAAAAGTTGAATGA             GGGGCGC GAGC GCGCCCC              GATAGGATCAATAAC  82 33
HAP49_RS06090 1292180 .. 1292190 -  -6.8  -3.20382   CGCGATATCGATGAA                 CTGG TGG CCAG                 CGCGGAGCGGCGCTT  53 454
        leuS 1289204 .. 1289216 -  -6.3  -2.53449   ACAGCGTCAGAATAC                GTTGT CGC ACAAC                TCCTCCTTGTGTTAA  49 37
        lptE NONE
        holA NONE
        nadD 1286851 .. 1286879 -  -4.6  -3.36492   GGCGTAACCGGATAA       TGG-TTTCGGCAG GCTG CCGCTGAAAGCCA        GCTAACTGGTGACTG  52 116
        rsfS NONE
        rlmH NONE
        mrdA NONE
        mrdB NONE
        rlpA 1281799 .. 1281812 -  -2.3  -3.96216   GTTTCAGCTAAATAA               CCGCT TAAC AGCCG                TGAATGCCCGCCGGG  53 49
        dacA 1280378 .. 1280401 - -15.4  -3.04203   CTAATCTATAAATTA          TAACTCCCGC CGGG GCGGGAGTTA           ATGTTATTCAGTATA  89 68
HAP49_RS06030 1280013 .. 1280053 - -10.3  -4.72272   TTCGCTGACCAAAAA  TGCGCAACCCGGGAAGACG CTG CGCCATCCCGGGTTGATAA  GCAGGGTTTTATGCT 100 45
        lipB NONE
        lipA 1278246 .. 1278266 -    -9  -5.55769   GCGCACAATAAAAAA            CGGATGCC TTGCG GACATCCG            TTTTTTGGCGTTTTC 100 71
HAP49_RS06010 1276382 .. 1276410 -  -9.5  -2.87132   GGCGTTTCTGACACA        GCGGATGCACCAA CTT CTGGCGCACCCGG        ACGAGGTGTTGCTGG  58 332
        crcB 1275608 .. 1275650 -  -5.1  -3.26031   GGCAGGCTAAACATA GCG-AT-TTCTCATCCAGT CAGGGGT ACTGGATGAGATTATGCGC ATGCAAGATTAAGGA  53 53
HAP49_RS05995 NONE
HAP49_RS05990 1273563 .. 1273579 - -13.7  -4.11484   CTGAATTTCTTAAAA              CCCGCTC ATT GAGCGGG              TTTTTTATTGGGCGC  93 42
HAP49_RS05980 1271772 .. 1271801 - -15.7  -4.22475   GAGCGAAAATAATAA       TCCCCGACGCGGC ATCA GCGGCGTCGGAGA        AATACTATTTCACGT 100 44
HAP49_RS05975 NONE
HAP49_RS05970 NONE
HAP49_RS05965 NONE
HAP49_RS05960 NONE
HAP49_RS05955 1266968 .. 1266990 -  -5.4  -4.98436   CGAAGAGGATAAAAA           CCAGCAGGGG ATC CGTCCGCTGG           ATTTCGCCGCCGAGA  83 100
HAP49_RS05945 1265799 .. 1265833 - -14.5  -3.22777   TCGGACATATCAATA    GCCTGTGTCAG-GTGA AAAC TCACGCTAACACAGGC     GACGACAAATTTCGT  86 65
HAP49_RS05925 1260358 .. 1260387 -  -2.8  -4.35483   GTGTATTACAACAAA       CAGGGC-TACCGC GCCTT GCTGTATACCCCG       GCCAGGCCCAACGGC  64 446
HAP49_RS05900 NONE
HAP49_RS05895 NONE
HAP49_RS05890 NONE
HAP49_RS05885 1253581 .. 1253604 -  -8.8  -2.59564   CTCTGACCGTATAAT          CGCAACCCGC AGCC GCAGGTTGCC           GCATCTCAATGCGCC  61 450
        folD NONE
        ybcJ 1251662 .. 1251679 - -12.7  -5.80951   AGTGAAAACAAAAAA             GGCGCTG AATT CAGCGCC              TTTTTCTATGGCTGC 100 44
        ppiB NONE
HAP49_RS05850 1248682 .. 1248701 -   -10  -3.55444   TTTTCACCGGCGAAA            GCGCGAAT TTTC ACTCGCGC             GCCTGCGCGGAACTC  74 39
        purE NONE
        purK 1246931 .. 1246953 - -13.5  -5.14965   AGCTCGATGAAAAAA           GGGGTTAGC TTAAG GCTAACCCC           TTTTGCTTTCGGCGG 100 49
        tesA NONE
HAP49_RS05820 1242341 .. 1242356 -  -4.6  -3.53811   GCCATGGGGTGTAAA              TGGGGG CGCG CCGCCA               TTCTTCAACCCCGTC  54 48
HAP49_RS05815 1241157 .. 1241169 -  -4.7  -3.69354   CTGGAGAATTTCAAA                CGGGC GTG GCCGG                AATTGGCGGGCGGTT  58 303
HAP49_RS05805 NONE
HAP49_RS05800 1238378 .. 1238405 -  -9.8  -3.89614   GCGAACTGGGAGAAA        TGCGCCAACGCC TGTT GACGCTGGCGGA         ACAATGTCCGGGCGA  76 95
HAP49_RS05790 NONE
HAP49_RS05785 NONE
HAP49_RS05780 1231736 .. 1231748 -  -4.7  -3.96327   ATTCGGCACGACAAA                GCCCG CGA CGGTC                TCTGCAGGCGGCGGT  59 115
HAP49_RS05775 NONE
HAP49_RS05770 NONE
HAP49_RS05765 NONE
HAP49_RS05760 NONE
HAP49_RS05755 NONE
HAP49_RS05750 NONE
HAP49_RS05745 NONE
HAP49_RS05740 1219170 .. 1219180 -  -5.4  -2.59742   GCTAAGCTCGATAAC                 CATC GGC GATG                 CGTTCTCCGCTGATT  47 1
HAP49_RS05735 1218406 .. 1218422 -  -5.7  -3.12351   GCGGTCGATAGCCAA              CCGGCCA CAT CGGGCGG              CGGCGTCATAGTGGA  53 128
HAP49_RS05725 1216594 .. 1216606 -  -3.4  -3.62418   AGAAGGGAGCTTAAA                CCTT CCAGC AAGG                GTAAGGTCAAGGCGG  49 143
        copA 1213777 .. 1213805 - -15.9  -4.12942   GGAAAGCCCGGAAAA        CAGCGGGGCGCCA TGA CGGCGCCCCGGCG        ATCACTTCTGCGGTT 100 27
HAP49_RS05715 1212655 .. 1212671 -  -6.5  -4.07687   ATGTGTTGTCCAAAA              TGTCCCC GGC GGGGAAA              GGGTGATAACCAGCC  69 221
        ybaK 1211846 .. 1211865 -  -2.8  -4.36914   CTGGCGGCCAGAAAA            CAGCCG TGGTTCGC CGACTG             GTATCACGCTTTGCC  64 319
HAP49_RS05700 NONE
HAP49_RS05695 1208734 .. 1208744 -  -8.2  -2.75498   CATCGCACAGATAAG                 CGGC CTG GCCG                 GCGGAGCTAAAGTAC  59 375
HAP49_RS05685 NONE
HAP49_RS05680 NONE
HAP49_RS05675 NONE
HAP49_RS05670 1200913 .. 1200929 -  -3.6  -2.82623   GGTGGTGCACAACGA              GCGTCG TCTGG CGATGC              CTGAGAGTGAAAACG  44 49
HAP49_RS05660 1198815 .. 1198861 - -16.6  -2.58544   GTGTATCGCTAGAAG CGTCGCGGAACGGCGCTCTCGC TTGTC GCGGG-GCGCCGTTCC-CGCCG TCGTTTTTCTCCTCT  91 83
HAP49_RS05650 1195720 .. 1195747 - -11.4  -3.41051   TTATCCGTAGGATAA        CCCGGATGAA TAAATAAT TTCATCCGGG         CGGTTCGCGGGGTTA  77 38
HAP49_RS05645 1193781 .. 1193808 - -12.8  -4.58283   TAACCCGCTGAAAAA        GAAAAGGTCCGG CATG CCGGACCTTTTT         TTATGCGCGGTGCCT 100 40
HAP49_RS05580 NONE
        rsmS 1179485 .. 1179503 - -14.6  -3.65313   CAATGAGAGGCGAAA             GGGACAGC GGC GCTGTCCC             TGGTTACTGTCCGGC  93 29
        sdeX 1173579 .. 1173594 -    -4  -2.73799   TCTATAAAGAACTTA              GCCATGT ATT ACA-GGC              TCCTTTTTATGACTT  44 32
        sdeY 1170384 .. 1170399 - -11.8  -5.54338   GAAGCAAAAGAAAAA              GGCCGC ATGC GCGGCC               TTTTCGATTATCGGG 100 63
HAP49_RS05545 NONE
        rpmJ 1169796 .. 1169818 - -14.9  -5.60993   CTCGCCATAAAAAAA           GCCCCGTTG AGTAG CAACGGGGC           TTTGCGACAGATGAC 100 50
HAP49_RS05520 NONE
        tomB 1165963 .. 1165985 -  -3.5   -2.8169   ATAACCGTAAAATAG          CTT-GGGAAT AATT ATCCCCTAAG           TTTTCATTGTCGTAC  44 21
         hha 1165595 .. 1165606 -    -3  -5.14563   GTCTCGATTAAAAAA                GAAA ATTG TTTC                 CGCGCAATATTATTA  76 147
HAP49_RS05500 1164796 .. 1164822 - -11.7  -3.61589   GCAAGATGAAATCAA        CAGCCTTTGCGC TTCG GC-CAAAGGCTG         TTTTGTTTTACCAGC  82 33
        tesB 1163140 .. 1163161 - -15.9  -4.30416   ATGATGAAGCCAAAA           GGGGCGATG GAAA CATCGCCCC            TTTCTTTATGCTGCG 100 43
HAP49_RS05460 1155569 .. 1155593 -  -3.4  -4.15044   CTCGGTTGCAACAAA         GGCAC-GGCGC TGGA GCGGCTGAGCC          GTTATCTGGGGCTGA  61 317
HAP49_RS05450 1153152 .. 1153165 -  -3.7  -4.01853   CAATAGTAGCAGAAA               GGGCC GCCA GGCGC                AGGGCGGTTCGGCTC  59 39
        queC 1152282 .. 1152309 - -11.2   -2.7127   CGATCGAAGGAGAAT        TGCGCGAGCACC TGGA GGCGCTCACGCT         GAAGGATAATCCGCA  70 81
HAP49_RS05395 1140743 .. 1140789 -  -3.6  -2.62263   AGTGTTTCGACATGA GTTCCCTGTCTG-CGCCGCCCGA TCCG CCGGGCGGCGCCAGGC-GCGC-C GATTAGCGCGCGTTT  43 28
        ampG 1138991 .. 1139002 -  -3.6  -3.90241   TACCAATGACAACAA                CGCG TTGG CACG                 CTGAATCGTGACGAG  57 285
        cyoA NONE
        cyoB NONE
HAP49_RS05375 NONE
HAP49_RS05370 1134942 .. 1134956 -  -2.8  -2.52896   TCAGCTCTTAATCGA               CCATCA TAT TGATGT               TGAGGTTGTACATAA  40 3
        cyoE 1133989 .. 1134008 -   -15  -4.99043   GCGTGACAAATAAAA            TGGGCCGC AAAA GCGGCCCA             TTCACAGATGATTTG 100 43
HAP49_RS05360 1132208 .. 1132234 -    -5  -4.13014   CCCACAGCGGTAAAA         CCTACAGCGTGG AAG CCAAGCTGAAGC         AGGGGATTGAAACCT  65 254
        panE NONE
        yajL 1130247 .. 1130270 -   -11  -3.00525   GCGGCGTAAACGAGA          GGGGCTGAAC TGGT GTTCAGCCCT           TTTTTTATCGGCAAG  73 45
        xseB NONE
        ispA 1127411 .. 1127429 -  -4.6  -2.68612   ACTCATATCAGAGGA             GTTAACGT CAC ACGTTAAT             TGTCGCGTTCAATAA  44 21
         dxs 1125483 .. 1125502 - -12.8  -4.54727   GGGCGGAAACGAAAA            CGCCCCCG AAGG CGGAGGCG             TTTTATCAGGCGCGG 100 48
HAP49_RS05320 1124413 .. 1124434 - -14.4  -2.87132   GGCTGTTCTGACAGA           CGGGCGCG GCGTTT CGCGCCCG            CTACTCTTTATTCAA  83 33
HAP49_RS05285 1119520 .. 1119538 -   -16  -3.61609   TCAGCGAAATGAGAA             GGAGCGCC GCC GGCGCTCC             TTTTTTTTGCCTCGA 100 45
HAP49_RS05255 1113229 .. 1113245 -  -5.2  -4.41633   GAGCTTTAAAAATAA              CCTTTT CCCAC AAAAGG              GCAAGCGGCAAAACG  69 86
HAP49_RS05250 1112435 .. 1112450 - -11.8  -5.61596   AGGGGCACAAAAAAA              CCGGCC CGTG GGCCGG               TTGATTCACTATCAG 100 48
         ggt 1110428 .. 1110453 -  -8.1  -2.64803   CGAGGGCTAAAGGGA         GTGCGGGGGCA GAAA CGCCCCCGCGA          TTAAGGTGAGTGGGT  58 48
HAP49_RS05235 1107040 .. 1107075 -  -8.5   -2.9176   AAGGGGATGGAGATA    TCTGCTGGCAATT GAAAGCGAAT AATTACCAGCAGA     CACAGTTACGTCAGC  60 46
HAP49_RS05230 1106677 .. 1106694 - -12.7  -4.82855   GACTAAATGGAAAAA             CACCGGC TGAG GCCGGTG              TTTTTTTAGGGTTTA 100 31
        sbcD NONE
        sbcC 1095483 .. 1095528 - -23.5  -3.06991   CAGCATCCTGAAAAC GAAAAAACCTGACGCCCGGAA GCGA TCCCGGGCGTCAGGTTTTGCC TGTATTTTATGTTTC 100 179
HAP49_RS05190 1094298 .. 1094308 -  -4.6  -4.19238   GCGCGAACGCCAAAA                 GGCA GAT CGCC                 GATCCGGGCAATGCG  65 319
        rdgC 1091801 .. 1091822 - -11.5  -2.53876   CGCTAGGGGAACGCA           GGGCTCAGC GAAG GCTGGGCCC            TGGTCATTTCTGAGG  70 46
HAP49_RS05095 1076125 .. 1076148 -  -4.5  -4.15044   GGGTGGTGGAACAAA          TC-CTCGCGG TGCTG CCGCGTGAGA          CGGTGAAATAACCTT  63 73
HAP49_RS05070 1070675 .. 1070704 -    -5  -3.72576   GGGGTGTTGACCAAA      CGCATTCTGGGGCG GATG CGCGCC-GA-TGCG       GCGCTGGAGGCCTTC  58 362
HAP49_RS05055 1068315 .. 1068340 - -10.6  -4.59109   CAGACCGTTGAAAAA         GGAGGAAAAA ACGTGG TTTTTCCTCC          TTTGTGGCCATCAGC  91 157
        aqpZ 1065739 .. 1065764 - -17.6  -3.51976   AAGGGCTGAAAGCAA         CGGGGCAGCC GATGAA GGCTGCCCCG          TGAAACGCAATCGAC 100 51
HAP49_RS05035 1063958 .. 1064002 -    -3  -4.16814   TCAGGAGATAAATAA CGGTGCT-GGATGATCATTATC ATC GATATTAATCACCCTAGCGC-G TTTACATGAACCAAT  59 64
HAP49_RS05030 1063161 .. 1063183 - -10.6  -2.82668   GGTGAAACGGGAAAT           CCCCCTCT GCGGGTG AGAGGGGG           CGAAGGGAATTACAG  69 35
HAP49_RS05025 1062540 .. 1062567 - -10.6  -2.57931   GGCATTGGCCAGAAT        CAGCGACGATCA GCCC TGATAGTCGCCG         CGCTTTAGTGTATAC  68 7
HAP49_RS04995 1058330 .. 1058357 -  -2.5  -2.62184   CGTCGCTGGAGATCA        TGCGCGTGCCG ACGTTG CTGCCGGCGCA         GGAGCAGGAGGAGCG  38 216
HAP49_RS04980 1056245 .. 1056268 - -16.8  -3.79251   TATTTCATGATCAAA          GAACGGCGGA GCGC TCCGCCGTTC           GTTTTTGTATAAGCT 100 347
HAP49_RS04955 1052000 .. 1052029 - -22.9  -4.74801   TAACGGTATGAAAAA       CGCCGCCGGTGGC CTGA ACCACCGGCGGCG        CGATGATCGCGCCTC 100 39
        tehB 1049466 .. 1049497 -  -8.6  -2.73875   TCCCGCCGAACACGA      GGCCTACCTGACTG AATG CCATCAGGCCGGCC       AGCGGCGGCCAACGC  54 370
        leuE 1047176 .. 1047200 -   -15  -3.83998   TGACGGGAGAGTAAA         CCGCGGCCGGC GGGC GCCGGCCG-GG          AGGGATCACGAGCTC  95 31
HAP49_RS04925 1045518 .. 1045540 - -16.2  -2.57974   AGTATCAGTAAGCCA           GGGCGCGGGC CAG GCCCGCGCCG           CTTCACTCAATAGCG  91 32
HAP49_RS04905 1042718 .. 1042730 -  -6.2  -4.11216   GCGGCAGGCGCAAAA                CGCC GCGTT GGCG                CAGGTGACGCAGGCG  67 175
HAP49_RS04895 1041489 .. 1041513 -  -2.8  -3.98256   CGCGCAGGAAAAATA         CGACACCT-GC TTCG GCGAGGTGCTG          AGCGCGGCGGCGGAC  58 163
HAP49_RS04885 1039256 .. 1039274 -  -5.9  -2.56914   CAGCTTATTAAGCGA             TGAGGCG GGTAG CGCCGCA             GCTCTCGCCGCGGCG  50 48
        cybB NONE
HAP49_RS04875 NONE
HAP49_RS04870 NONE
HAP49_RS04865 1035078 .. 1035120 - -15.7  -3.53012   CCGGTGTGCGGCAAA TCGCCGCATCACG-GC-ACCA TTC TGGCGGCGCGTGAAGCGGCGA ATCGCTCGCAGATCG  85 166
HAP49_RS04820 1026826 .. 1026837 -  -3.6  -3.28712   GTTGTGGCTGGATAA                CCGG CCGA CCGA                 TCGCTTCGTGTGCGA  46 477
HAP49_RS04725 NONE
HAP49_RS04720 1007662 .. 1007690 - -11.1  -3.31501   ATGAACTGCCGATAA        GCGTCGGTCAT TCAGGTG ATAACCGACGC        CAATTAAGCTATATG  76 48
HAP49_RS04715 NONE
HAP49_RS04710 NONE
HAP49_RS04705 NONE
HAP49_RS04700 NONE
HAP49_RS04695 1003215 .. 1003228 -  -9.5  -3.54638   ACAAGCGCTCCCAAA               CCGGC TCAG GCCGG                TTTTTTATATCCTCG  74 92
        pepD  989943 ..  989959 - -10.8   -5.4505   CTTGGGAATAAAAAA              GCCGGC GATTA GCCGGC              TTTTTGCGTTAAGCG 100 47
HAP49_RS04615  987776 ..  987791 - -11.8  -4.28774   GTAGCGAAGCGAAAA              CCCGGC CTTG GCCGGG               TTTTTTTATTTCGCC  95 31
HAP49_RS04570  979297 ..  979318 - -10.1  -3.91084   TGACCGCCAACGAAA           CCTGGCACA AGAT TGAGCCAGG            CGAGTTCGCGTTATT  78 36
HAP49_RS04555  975165 ..  975184 - -13.6  -5.56372   AAAGCAAAAGAAAAA            GGGGCGAT GATG ATCGCCCC             TTGGATGCGTGAAGT 100 46
HAP49_RS04550  974429 ..  974441 - -10.5  -3.78775   TGTGCCATCAGCAAA                GCCGC GAT GCGGC                GCTGGCGACGCCGGG  74 352
        mtnA  972012 ..  972026 - -11.4  -3.21099   CGCCCGGACCACGAA               CAGCGC CAG GCGCTG               CGTGAAAAATTCCTG  67 319
HAP49_RS04520  969153 ..  969163 -  -4.6   -3.5365   TTAAAGTCGACATAA                 CCGC TCC GCAG                 CTGCATCCAGCGTGG  54 0
HAP49_RS04515  967949 ..  967968 -  -3.4  -3.13403   TCGGCTGCATCAAGA            GCCTGCCG GGTG CGGCCAAC             GTGATCCCGGGCGAA  44 434
HAP49_RS04475 NONE
        hpxX NONE
HAP49_RS04465 NONE
        hpxZ  957731 ..  957741 -  -8.2  -3.73224   TGATCGCCGATGAAA                 CGGC CGT GCCG                 GCGGCGATGGGCATT  69 494
HAP49_RS04450  954701 ..  954726 - -16.3  -3.37796   CGCCACTATTCAGAA         GCCCTGAGTTA GCGA TAACTCAGGGC          TTCGTCGTTTCCGTT 100 95
        rnhA  953135 ..  953175 -  -3.8  -3.85817   ACTGGGGGCGAGAAA  GCCGTCTCTCAGCCGCGC GGTGG GCGCGACCAAGAGCTATC  GCAAGCTGCCTTAGG  57 36
        gloB  951662 ..  951673 -    -3  -3.90464   CGCCAAATAACACAA                CTAA AAGC TTAG                 AAGTTATCTTTCCGC  54 22
        mltD  950182 ..  950197 - -10.4   -5.4833   GCAGCTAATAAAAAA              GCACCC CGAA GGGTGC               TTTTTTTGTGCCGAA 100 44
HAP49_RS04405  946937 ..  946954 -  -8.3  -3.42996   CAGTAGTTAGCATAA             GGCGTCC ATCA GGGCGCC              TTTTTTATCGTTTCA  65 30
        bamD  934810 ..  934827 - -12.7  -4.42238   CGACGCCAATGAAAA             CGGCAGC CTCG GCTGCCG              TTTGGTTTTTCTGCC 100 56
        raiA  934161 ..  934176 - -11.8  -5.26918   ATACCCGACAAAAAA              CGCGCC CTCG GGCGCG               TTTGATGCGGCAACC 100 53
HAP49_RS04345  933964 ..  933983 - -11.4  -5.65177   ACAGCCATAAAAAAA            GCCCCCTG TCTC CAGGAGGC             CTTATTGTTCGTCTT 100 50
        pheA  932723 ..  932741 - -14.6  -4.35524   GCGGTAAACGTAAAA             GGTTCGGC TTG GCCGAACC             TTTTTTTATGGTTTC 100 39
HAP49_RS04325  929201 ..  929217 - -12.3    -5.626   GACGGCATAAAAAAA              GCCCATC GAT GATGGGC              TTCGAGAAATAATGG 100 47
HAP49_RS04320 NONE
HAP49_RS04315 NONE
HAP49_RS04310  927959 ..  927974 - -10.4  -4.46073   CGCCAACATAATAAA              GCCTGC ATAA GCAGGC               TTTTTGCATTACAGC  91 34
HAP49_RS04280  923246 ..  923266 -  -3.2  -3.75535   TTATAGAGAGGGAAA            GTTGAACC GGGCT GGCTCAGC            GCACCATCACCTGTT  52 21
HAP49_RS04275  921892 ..  921907 - -10.4   -5.4251   CGCAGAGACAAAAAA              GACGCG ATTT CGCGTC               TTTTTTACGTTCTGG 100 48
HAP49_RS04200  909969 ..  909986 -  -6.9  -3.66803   CGCGAAGAGGCGAAA             CGGCGTG GCAT CACGCTG              CATGCCCCCTATAGC  59 305
HAP49_RS04165 NONE
HAP49_RS04160  902102 ..  902113 -  -7.2  -3.14051   CGAGGGCGAGCAACA                CCGC TCGC GCGG                 TAAGCGCATATGACA  59 72
HAP49_RS04155  900957 ..  900968 -  -7.2  -4.31379   ATCAAGTCATCAAAA                CGCC AAAC GGCG                 TGTTCAAACCCAAGG  76 194
        mutS  898221 ..  898241 - -15.5  -5.33405   CGCATCAAATAAAAA            CGGTGAGCA TGA TGCTCACCG            TTTTTTTATGCCCGC 100 54
HAP49_RS04105  890669 ..  890708 -  -7.1  -3.57144   CTTGGTAGGCTGAAA CGGTGGTGCGCCGACGCCC TTGC GGGCGCCGGCG-A-CAGGG  GATTATTCCGCCGGC  62 28
HAP49_RS04100 NONE
HAP49_RS04095  888721 ..  888745 -    -7  -5.53288   CTGAATTCAAAAAAA          GCGTGTGGCG TTTTT CGCCATGCGC          TTTTTACTCTAAGCC 100 451
HAP49_RS04065  882912 ..  882936 - -15.7  -2.64616   GCGTGATTGACATGA          CAGGGCTCAGC AAT GCTGGGCCCTG          TTTTTTTGCGGGCTA  86 38
        queD  877759 ..  877777 - -13.8  -3.08508   CATCGCCTAAAATCA             GGGCGCCA TTG CGGCGCCC             TTTCTTTTAACCTTT  81 32
HAP49_RS04035  875388 ..  875404 - -15.1  -4.25056   CACCGCAGGAAGAAA              GCCCGCC GTG GGCGGGC              TTGCCAGGCTCAGGC 100 35
        hutU NONE
        hutH  871742 ..  871793 - -12.9  -3.01791   AGTGTTTGCCGAACA GGCACGCGCTGCCCGCGCCGGGTG GAACG CACCCGGCG-GGGCAGAACAAACT GCGTGATTCAGTATG  78 47
HAP49_RS04020  870286 ..  870299 -  -9.5   -5.7946   GGCGCAATAAAAAAA               CCCGC CGCA GCGGG                TTTTAGCCGAAGCGA 100 44
        barA  855489 ..  855521 -   -10  -4.09685   CGTCAGGCGCTAAAA     GCAACAAAGGCACGC TATG GCGTGC-TTTTTTGC      ATTATGGCCTGAGGA  80 42
        mtnN  851477 ..  851503 -  -2.2   -3.2818   CCAACAGGCAGAACA         TCGAGGTGAAGC ACA GTCTCACATCAA         CCGCGCTTGGCCAGG  44 22
        btuF  850684 ..  850715 -  -5.9  -3.37622   AATATCCAGCCAGAA     CACCAGCATCAGCGG ATCT CCGCC-A-GCTGGCG      GCACAGCTGCTGCGC  57 2
HAP49_RS03945  849686 ..  849705 -    -5  -4.71426   TGCTGACGAAGAAAA            CCCG-AACC TGA AGTTGCGGG            TTTATATTACCGGCG  78 398
        hemL  846566 ..  846583 - -14.1  -6.02914   CGCAGAGAAAAAAAA             CGGGCGC CGAG GCGCCCG              TTTTTTTTTTGGCCA 100 52
        nadC  844063 ..  844106 -  -3.9  -5.41143   CAGCGGTGAAAAAAA CGGTGCGAGGGGC-TT--CGCA AAC TGCGGTAACGCCCCCGGCAGCG GCCGGGGGCGAGGGG  85 42
        ppdD NONE
        gspE NONE
        hofC  840369 ..  840385 -  -7.9  -3.05384   TCGGCGGTGATCGAA              TGCGCCG ATG CGGCCCA              CGGGCTGGGCGGCCA  54 493
        coaE NONE
        zapD NONE
        yacG  837740 ..  837774 - -11.5  -3.61894   AACGCCGCGCAATAA    CCAGT-TTGGCCTGGC GTCC GCCAGGCCAACAGCGG     GCGATCAGCGATCGT  79 30
HAP49_RS03860  833246 ..  833256 -  -6.8  -3.68244   AGGACGAAGCCGAAA                 TGCC GTT GGCA                 TTCAAGGCACCGTCT  62 160
HAP49_RS03775  814108 ..  814125 -  -8.3  -2.87211   AGTTTGCCTGACAGA             GGCCCGC GTTG GCGGGCT              CCTGGTTTAGACGTA  60 32
        leuL  806297 ..  806314 - -14.1  -6.06723   GCGGGCAAAAAAAAA             CCCGCGC AGTA GCGCGGG              TTTCTTATGGGTGAT 100 49
        leuA NONE
        leuB NONE
        leuC  802163 ..  802173 -  -3.2  -2.67803   TGTTGAGTAAATTTA                 GCCA CGT TAGC                 CCCTTAGTGAATATC  40 29
        leuD  801536 ..  801559 - -16.8  -5.14563   CTGGTGAGGAAAAAA          TTCACCCGCC GGGC GGCGGGTGAA           GGGGATTAATTCAGA 100 31
        sgrR  796615 ..  796625 -  -2.4  -2.67289   ATTGTAAAGATTAAC                 CGAC TTG GGCG                 AAAGGCGCTTATGTC  39 34
HAP49_RS03700 NONE
        thiP NONE
        thiQ  793150 ..  793165 -  -3.9  -3.78042   CGCAGCATAAAAAAC              GCGCG TCAGAT CACGC               TTTGCCCGAAATGCC  54 20
        ivbL  792905 ..  792929 - -10.7  -4.67697   TGCTAAAACAAGAAA         CCCCGCCCGG TTTGCG CCG-GCGGGG          TTTGGGAATCGATGC 100 54
        ilvB NONE
        ilvN  790832 ..  790847 - -11.8   -4.5442   CGGGCAATGACAAAA              GGGGGC GAAA GCCCCC               GTTCGCCTTACTGGA 100 33
HAP49_RS03665  787340 ..  787372 -    -7  -3.01791   ATTTGGCGGGCAATA     GCCGT-TCACGCCAT GCAG ACGTCGCGAGACGGC      AGGGCTAAGCGTGGT  54 128
        rapA  784280 ..  784318 -  -9.5  -4.07568   TTGGCTCCGCGAAAA  GGGCCGAC-CGGGGAGAC GGTG GCCTCCCCATGTCGCGCC   GGTTACTGGTGGGTG  80 28
        rluA  783620 ..  783630 -  -2.4  -3.90318   TTATGAGCTCAGAAA                 TCCG GCT CGGC                 GCGAAAGTGCATCGG  53 8
        lptD  780056 ..  780069 -  -3.1  -3.56594   TCAAAGTGTTGCAAA               GCGTCA GAA TG-CGC               GCTGATACGGCAGAA  49 15
        surA  778684 ..  778707 -  -3.1  -2.70932   CGCCGGGGGTAATGA          CGACGCG TTTATTGCTG CGCATCG           CTGCCATCGAGGATC  40 10
        pdxA NONE
        rsmA NONE
        apaG NONE
        apaH  775631 ..  775648 - -14.1  -4.23707   ATAAAGTGGAACAAA             GGCGGCC ACGG GGCCGCC              TTTGTATTTTCAGGA 100 35
HAP49_RS03595  770877 ..  770905 -  -5.8  -2.76885   AAGCCAAAGGATAAG        GGGAGGGGCGCC GTGAT GGCGCCCCTTTT        TTTGCTTAGCTCAGC  51 31
HAP49_RS03550  757774 ..  757793 -  -9.2  -3.52652   GTGAGTGAATGACAA            CGGGGAGC TTAG GCTTCCCG             TTTTTTTTGGAATGC  70 257
        rpsT  751341 ..  751354 -  -9.5  -5.48825   CAGGACGTAAAAAAA               CCGGC CTGA GCCGG                TTTTTTTATCAAGCA 100 54
        satP  744710 ..  744726 - -13.7     -6.13   ACAGCTAAAAAAAAA              GCCCTGC AGT GCAGGGC              TTTTTCATCAGGGGC 100 47
HAP49_RS03470  739726 ..  739754 -  -8.7  -3.03159   GCAATCGGTCCAATA        GGCGGGGCGTGCA TCG CACACGCCCCGGA        ATACTCAGCGCGGCG  65 30
        yaaA  738856 ..  738871 - -10.4  -4.28049   GGTAAAATGCGAAAA              GCCGTC TTGC GACGGC               TTTTTTTATGCCTGT  89 31
        arcA  731707 ..  731730 - -16.8  -5.99154   GACGAAATAAAAAAA          CGGGGTTCAG CATG CTGAACCCCG           TTTTCATGACGGCAG 100 48
        robA  729958 ..  729992 -  -4.4  -3.55444   GCTGGATCGTGGAAA    CGGCGGGCGATGTC ACGCATTTG GACAT-GCCCGC-G    TTGGACGAACTGCAG  54 43
        yjjX  728504 ..  728533 - -10.7  -3.61398   TCGTTTGCGCAAGAA       CTGCATCAACCGC TGCT GCAGCTGATGCTG        ACGCCGGACGAGCGC  73 238
HAP49_RS03400  725175 ..  725187 -  -4.7  -3.08679   GGTTTTTACGCAACA                GCCTC ATA GCGGC                GGCGCCTGTTTGCGT  48 16
HAP49_RS03395 NONE
HAP49_RS03390  723339 ..  723349 -  -6.8  -2.89564   CTCGGATCCCAGACA                 TCGC TCA GCGA                 TCGCTAAGTATAACC  54 74
        ettA  721563 ..  721580 - -14.1  -5.52384   GCGGGAGTAAAAAAA             GGCGCCG CATG CGGCGCC              TTTCGTATTACTTGG 100 33
HAP49_RS03375  719516 ..  719536 - -19.7  -3.14132   GTTCGTCCGCAGTAA            CGGCGGCGC GCT GCGCCGCCG            CGATTCAGGCTCAGT 100 36
HAP49_RS03350  713205 ..  713234 -  -7.2  -2.78384   CGCCTTTGTACGATA      TGC-TGCCGATGGC TTTT GCC-CCGGCAAGCA       GCGGCAATCTGCGCC  52 233
        rsmC  696700 ..  696718 - -17.4  -5.77853   AACGGCTAAAAAAAA             GCGCGGCC TCA GGCCGCGC             TCTGTCGTTTTCCGC 100 51
HAP49_RS03095  665377 ..  665392 -    -4  -3.96148   TTCGCGTACCAGAAA              CATTAC CGGA GTAACG               TTACCACGGAGGCGA  57 72
HAP49_RS03090 NONE
HAP49_RS03085 NONE
HAP49_RS03080  664958 ..  664973 -  -4.6  -4.26189   CCAGAAACGGCAAAA              CCACGC TTAA GCGTGT               TTATCATCAATGCGT  63 80
HAP49_RS03070  662917 ..  662930 -  -3.7  -2.62184   GCCTGGCCGACATTA               CCGCG AGCA CGCCG                GATGACTGGGAGGCC  41 411
HAP49_RS03060  661330 ..  661340 -  -8.2  -3.55563   AGGCGATTTGGGAAA                 GCGC CTA GCGC                 GAGCGGTTCATGCCG  67 33
HAP49_RS03050  658778 ..  658796 -  -2.2  -3.64822   ATGGGGCGAGTCAAA             CCGGCGAC GCT GCTGGCGG             TCTATGCGCTGATCA  49 344
HAP49_RS03010  651865 ..  651882 -  -5.5  -3.58269   CAATGCAGCGGGAAA             GGGCG TAATCCAT CGCCC              AGTGTAATGCGCCCG  56 101
        ampH  650584 ..  650595 -  -7.2  -3.05463   ATCGCGCTGAGCGAA                GCCG GCAA CGGC                 CTGATCTACTTCAAG  54 119
        hpaR  639242 ..  639257 -    -9  -3.09492   GGGGGAACCGGAAGA              CATCGC CGCG GCGATG               GTGTTTCTCGCCTCG  60 229
HAP49_RS02905  630661 ..  630691 - -11.1  -3.48292   AGTGACGATGAAATA      TCCCGCCCGGCCCG ATTG CGGGCAGGG-GGAA       GCCGCGCCATAAATG  77 98
HAP49_RS02900 NONE
HAP49_RS02895 NONE
HAP49_RS02890  627039 ..  627070 -  -5.1  -3.91716   TTACTGCTTAAACAA      CCGCTGCCGGAACT GCTGG AGAT-CGGCAGCGT      CAGCAACCTGGGCGC  60 382
HAP49_RS02870  623373 ..  623396 -  -3.8  -3.01712   TCTTCTTGCCGAAGA          TTCTGATCAG CGCG CCGACCAGGA           TGCCGACCGCGATGC  45 107
HAP49_RS02860 NONE
HAP49_RS02855  619376 ..  619400 - -15.7  -3.54543   ATGGAGCGCGCGAAA          TGCCGGGGAGC GTT GCTCCCCGGAA          GTTTATTGTTCTTAT 100 44
HAP49_RS02850 NONE
HAP49_RS02845  616367 ..  616382 -    -9  -3.35679   TGCGGTGATCGACAA              TGCGCT GCGC AGCGCA               GCGGCGCGCGGCGTG  63 447
HAP49_RS02815  610554 ..  610582 -    -9  -4.63218   GGTGCTGTAATAAAA        TAAATAGCCACC GCAAG GGTGACTATTCA        TTCATGTTTACAGGC  90 33
HAP49_RS02790  606994 ..  607009 - -10.4  -5.37345   GTGAACGATAAAAAA              GACGCC TGCG GGCGTC               TTTTTTTATGCTTTC 100 66
HAP49_RS02770  603428 ..  603440 -  -9.1  -2.66733   GCTGAAGGGAGACGA                GGCGT ATC ACGCC                AACCACGTCTATCTT  56 193
HAP49_RS02730  595171 ..  595191 -  -2.5  -4.11216   GTTCCATGTCGAAAA            GCCTCCTTA TTT TTAGGAAAC            TTAACATTTTCTACA  55 105
HAP49_RS02725 NONE
HAP49_RS02720  593263 ..  593275 -  -4.7  -4.72272   GCCGTTTATGAAAAA                CCAGC CGG GCAGG                GAGCTGTGCTTATAT  78 513
HAP49_RS02710  591421 ..  591448 -  -4.2  -3.35813   CCTTAGGTTAACGAA        TCAG-TGGATGGT TAC AGCATCCAGCCGA        GTTCGGCGGCGGTGA  52 9
HAP49_RS02705 NONE
HAP49_RS02700  590254 ..  590280 - -11.5  -4.90778   CGCAGCGAAATAAAA        CGGCGCGC-CTG AATA CCGCGCGCGCCG         TAACATTAATAAACC 100 31
HAP49_RS02695 NONE
HAP49_RS02690  587268 ..  587283 -  -7.5  -2.54881   GAGTTAACGAAAATG              CGGCC TTATCC GGCCG               GTTGCGCCTGCGCGA  55 15
HAP49_RS02685  586126 ..  586151 - -17.6  -3.68209   AAGACAAATAATGAA         CCGGCCGCAG AGCGCG CTGCGGCCGG          TATCGGGTCAGAACT 100 33
HAP49_RS02680  584721 ..  584731 -  -8.2  -2.96216   GCTTATCATGAGACA                 CCCG TGG CGGG                 GTGACTCTTGATAAA  60 88
HAP49_RS02675  583985 ..  583996 -  -7.2  -3.17075   CTCCCTGGAAGTGAA                CGGC ATTA GCCG                 GAGCCGGCGATGCGG  59 19
HAP49_RS02670  583030 ..  583063 -  -9.4  -2.52464   TCGGCCGCGAAGTGA     TCCCGCTGGTGCGC GAACTG GAGCGCCAGCGGGC      GGCGGCCTGAGCGTT  61 40
HAP49_RS02660 NONE
HAP49_RS02655  578950 ..  578963 -  -5.9  -3.01924   GACTGCGGGTTAACA               GCAGC GCAT GCCGC                CTTTGCCGTCGCCGC  52 6
        yjiA  577891 ..  577901 -  -8.2  -3.05384   CTTTCGGTCAGGCAA                 CCCG TTG CGGG                 TTGCCGCCGTTTTCC  62 93
        ascF NONE
HAP49_RS02610  567340 ..  567371 -  -4.5  -2.64258   AGGAAGGCAATCAAC      TTAG-GTTGGAAGC CCTCC GCTCCCCACGCTAA      CCCCATCGCCCAAAC  44 41
HAP49_RS02595  565649 ..  565660 -  -2.2  -2.55544   CCAGCAGTTAACTCA                TCGA TTTA CCGA                 ATGCGTTAACTATGC  38 164
HAP49_RS02590  564561 ..  564579 -  -3.2  -4.42653   ATTCTACTTATAAAA             GTAATTTA TTC TAATTTAC             GTGTTAGGTTGATCA  61 305
HAP49_RS02585  562159 ..  562186 - -14.3  -4.15366   ATTTAAATAATCAAA        TTGGGAGGTGT TTTTGG ACACCTCCCAA         CTGAGTTGCTATGGC 100 34
        pepA  553463 ..  553490 -  -7.7  -5.60993   CTGCCGATAAAAAAA        CAGGGCACAAC ATGTAG GTTGCGCCCTT         TTTGGGAACGGAGCA 100 201
HAP49_RS02545 NONE
HAP49_RS02540  550048 ..  550067 -   -15  -5.61596   ACGGCGATAAAAAAA            CAGCGGGG AAGA CCCCGCTG             TTTTCAGGCGTTGGC 100 54
HAP49_RS02535  549353 ..  549370 - -12.7  -5.16841   CGATATTAATAAAAA             GGCGCAG CAAG CTGCGCC              CTGATGAAGAGGCGG 100 48
HAP49_RS02530  547084 ..  547094 -  -2.4  -4.57073   GATCCTGCCGAAAAA                 CGGC TCG GCCT                 ACGGCCAGGATCTAG  68 490
        argF  545076 ..  545104 - -13.1   -2.7535   TCCTGGAATATATTA        GCCGCCCTGGC CGGGGGC GCCAGGGCGGT        GGAGGAGGATTGTCA  77 38
HAP49_RS02510  543119 ..  543135 - -13.7  -5.86332   TTAAGGCAAAAAAAA              GCCCCTC AAT GAGGGGC              TTGAAACGATCGGTT 100 242
        pyrB NONE
        pyrI  541622 ..  541638 -  -7.2  -3.48378   ACCGGGAGAATAACA              GCGCCA TCTCC CGGCGC              CCATACCGGGCTTAG  62 37
        ridA  541126 ..  541145 - -13.6  -5.40464   GAGCAGAAATAAAAA            CGGCCAGT CTGC ACTGGCCG             TCATTCGCGTGCGCG 100 45
HAP49_RS02490 NONE
HAP49_RS02485 NONE
HAP49_RS02480  537704 ..  537733 - -12.8  -3.68435   TCCCTCAAAACAAGA       CCGGCACGCCGC CAACGC GCAGCGTGCCCG        AAACATTTGCCATCG  85 49
HAP49_RS02475  536620 ..  536648 -  -6.5  -3.34233   GGATAAGCGCGATAA        GGCGGCGGCGCAG GCG CTGCGCGAACGGC        TGCAGCGCTGGCAGG  55 330
        treR  530117 ..  530130 -  -2.3  -3.90112   GCTTTTTGAATGAAA               TGGGA ACGT TCCCG                GTTTGGGGCGAGGAT  53 80
        treB  528592 ..  528611 - -13.6  -2.59742   TTGAATCGTGACAAC            GAGCCTGC GCGA GCAGGCTC             CTACATTCATATTGC  78 46
        treC  526867 ..  526896 - -11.3  -2.91276   CGTTGCTGGAGAAAT       GGTAGGGCGCAGC GCTC GCCGCGCCCTGCG        GGGTTAGTCTTCGAG  73 29
HAP49_RS02440  525167 ..  525190 -    -8  -3.64103   TATCCACAGGGCAAA          GCCGCAGCGC GCAA GGGCTGTGGC           GGCGTGTGGATGATT  67 161
        nrdD  522886 ..  522907 -  -2.9  -3.75153   CTGGCCGAAGGCAAA           CTGGCGGCGA CAA TCAC-GCCTG           ATGAACAGGCTTCTG  52 61
        nrdG  522083 ..  522095 -  -2.6  -4.34482   CCTGGTAAAAAAAGA                CGCA GATCT CGCG                GCCATTGATGGGATA  62 240
HAP49_RS02420  519093 ..  519103 -  -2.4    -4.183   TGAACGCTTAAGAAA                 CGGC ACC GCGG                 TTTATCTCAGCCATT  59 292
        phnF NONE
        phnG NONE
        phnH  515931 ..  515945 -  -2.7  -2.84812   ACGTACATCAGCACA               CCTCC ACGCG GGTGG               TCCGCGGGATCGCCA  41 3
HAP49_RS02390 NONE
HAP49_RS02385 NONE
        phnK NONE
        phnL NONE
        phnM  511326 ..  511341 -    -4  -2.94218   AGGCCCCATCAGATA              GATGAGC CGC GC-CATC              AGAACACCTGCCTGC  45 24
        phnN NONE
HAP49_RS02360 NONE
        phnP  509330 ..  509368 -  -8.1  -3.34398   GGTCGCCGCCAAAGA  CGTGGCGCAAACG-CTGC TGCA GCAGGCGTTCACGCCGGG   CGAAGGGGTCAGAGT  60 34
HAP49_RS02340  507744 ..  507768 -  -4.4  -3.51234   AGTGAAACGCAAAGA         CACTCTTAACA ACGG TGT-AAGAGCG          AGGGGGAGGGTTATC  54 36
        speF  505321 ..  505345 -  -4.4  -3.28712   TCCGGGCGGCGAGAA          TAATCACC GCCCCGTAA GGTGATTA          ATTTTTCATGACGTA  50 23
        potE  503542 ..  503558 -  -2.9  -3.51232   TTGGTTGTAAATCAA              CGATGAT CAT AGCACCG              CCGGAAAGCAGAGCA  49 431
HAP49_RS02325 NONE
HAP49_RS02320  502264 ..  502285 -  -7.1  -3.83026   TGGCGGTAGACGAAA           GCCTGCGCC GTCA GGGGCTGGC            TGAAAAGCTGGTGTA  65 250
HAP49_RS02305 NONE
HAP49_RS02300  499325 ..  499354 - -23.7  -4.55697   ATCTTGATAAATAAA       CAGAGCCGGCAGC GCCC GCTGCCGGCTCTG        TCCTCGTTAAGACAC 100 32
HAP49_RS02275  493911 ..  493924 -  -2.4   -3.7282   GCAGTCGATCAACAA               CATC CCGCTC GATG                CGCGCAACCACGGCT  52 137
        yhbY  473939 ..  473952 -  -9.5  -4.90217   TAAAGATAGGAAAAA               GGCCG CAAG CGGCC                TTTTATCTTGGTCAG 100 74
        dacB NONE
        pmrA NONE
        pmrB  469969 ..  469989 - -12.5  -3.86822   TAATTCGGTGATAAA            GGGCTCAGC AAC GCTGGGCCC            TTATTATTTGAGCGC  87 29
        ispB  465801 ..  465847 - -10.9  -3.13867   GTATCGACGAAGAGA GCAATAC-CTAGGCAGGCCCGC GTGG GCGGGCCTGATGAATGTATTGC GAAATTAAAATTTCT  71 40
HAP49_RS02120  464973 ..  464996 -  -9.5  -2.93572   AGTCAGCCGATAAAC          GCCGCCGGA CGCTGT TCCGGCGGT           TTTTTTTGCTCCGCG  67 42
        argR  463026 ..  463066 - -22.1  -3.92542   GCGAGGGTTAAAGAA  GCGCTAACAAAATGCGGTT TAC AGCCGCACTTTGTTAGCGC  CAGGTTTCACAGCTC 100 32
        yhcN NONE
        yhcN  461888 ..  461905 - -12.7    -5.252   TACGCCCATAAAAAA             GCCCTCG CGAG CGAGGGC              AACGGGGTTCGTCGG 100 142
         fbp  459234 ..  459256 - -19.2  -3.36492   GCTGTAAGGCGATAA           GGGTTCGGCG CGG CGCCGAACCC           TTGCCAGTAACGCGT 100 40
         ppa  456837 ..  456855 - -14.6  -5.84381   TCAGTAATAAAAAAA             CACCGCTC AAT GAGCGGTG             TTTTTTCATCGGACG 100 51
        msrA  449908 ..  449938 - -11.9  -3.26932   ACAACCAGAAGGGAA      GCTAT-CGGGCCGC AGAA GCGGCCCGCATAGT       ATAGCAGTTGCCCCA  79 86
HAP49_RS02055  448445 ..  448465 - -13.9  -5.76949   CAGCGGTAAAAAAAA            TGCGGCCCC GAT GGGGCCGCT            GATGTTTTTGTCTTA 100 47
HAP49_RS02045  447337 ..  447347 -  -6.8  -3.02511   GTTAGTTCGCCAACA                 GCTG GTG CAGC                 TTGGACATCACCTGC  54 1
HAP49_RS02035  444345 ..  444363 - -11.7  -3.15249   CAGACGGGCGATGAA             TGGCCGG GCGCG CCGGCCA             TAAACCGTGTTACTT  77 35
HAP49_RS02025  442271 ..  442289 - -11.7  -4.11484   GTTAACCGGTTAAAA             CGCCAGC CTCGC GCTGGCG             TTTTGCTTTTCTGCG  90 448
HAP49_RS01995  439677 ..  439689 -  -4.7  -3.84514   ATGGGAACGATGAAA                GCGCG CGC CGAGC                TTAACTCAGCGGCCT  60 412
        bsmA NONE
HAP49_RS01975  437635 ..  437653 -  -4.5  -3.14211   ATGGGCGCTGATCAA             GGCCGAT AATCA ATCCGCC             GCCTTTGCTTTCATC  47 280
        queG  417913 ..  417923 -    -4  -4.57073   CACGCCCGGTAAAAA                 TGTT GTG AACA                 GAGTTATCCACAGCC  66 247
        rsgA  415402 ..  415446 - -14.4  -3.63895   GTGAATCAGGGTAAA GGGCGCGCATTGTAACGAGGGC TCC GCCGTCG-T-CAATGCCCGCCC GTCAGTGTCAGTCTG  89 33
         psd  414464 ..  414476 -  -4.7  -4.27192   AAAGCGTGATGAAAA                GGCGC ACG GCGTC                GATTCCTTTAGATCG  63 33
        mscM  411083 ..  411102 -   -15  -5.25735   GGAAAAAAGCAAAAA            GGGTCGGC ATTT GCCGACCC             TTTTTTATCGCGAGA 100 46
        frdA NONE
HAP49_RS01840 NONE
        frdC  406769 ..  406779 -  -2.4  -2.66316   CTCCGGATTAGATCA                 GGGC CAC GGCC                 AGGATGACCACGCTG  39 7
        frdD  406356 ..  406381 - -14.7  -4.46926   TAGCCGATGAGAAAA         GGGCGGCCAAC GGGC GTTGGCCGCCT          GAGCGGTTTACAGCG 100 33
         blc  405614 ..  405655 - -12.1  -4.28361   CCAACGCCATGAAAA CGCTGCCCGCCGGCACCGC CTAC GCGGTGTGGACCGGCATCG  GCGCGGTGGGCGCGG  91 141
        epmB  403124 ..  403145 - -13.1  -5.77988   ACAGAGATAAAAAAA           GAGGAATGC CACG GCATTCCTC            TTTTCGTTCCATCAG 100 56
        aspA  396088 ..  396116 -    -9   -5.0925   GCCGAAAAGTAAAAA       GGCACGCT--ATCC AGA GGATTTAGCGTGCC       TTTCAGGGCTACCGG 100 50
HAP49_RS01765  394564 ..  394581 - -14.1  -4.48987   TCGCCAGAAGGAAAA             CCGGGGC CGCA GCCCCGG              TCAAAGCATTACAGC 100 34
        cutA NONE
HAP49_RS01755 NONE
HAP49_RS01750  391713 ..  391724 -  -7.2  -3.54424   CCGTATTGGCCGAAA                GCCG TCAA CGGC                 TTTATGCGTGAAATA  64 143
HAP49_RS01745  391575 ..  391594 - -11.4  -5.86976   CCAGAAAAGAAAAAA            GCCCCGCT TTGC AGCGAGGC             CTTATGAATAGTGGT 100 37
HAP49_RS01735  388191 ..  388205 -  -4.2  -2.81888   TGGGAAATCGAACGA               CCCGTG AGA CACAAG               CAAAACCCAAGTTGG  45 158
HAP49_RS01730 NONE
HAP49_RS01725  385260 ..  385270 -    -4   -4.1552   TATTTGCTTAATAAA                 CTAA AGC TTAG                 AAGAGAGTATTTAGA  63 281
HAP49_RS01690 NONE
HAP49_RS01680  375742 ..  375763 - -13.7  -3.07935   AGTGTATGTAGTCAA           GCCCGCCAC GACT ATGGCGGGC            TTTTTCTTCGTTTTG  81 56
HAP49_RS01620  365141 ..  365163 -   -12  -4.20769   ACACCCTAAGATAAA           TCCCCTTGGC TAG GGCAAGGGGA           TCCTGAGAGTGAGAT  95 74
HAP49_RS01560  348235 ..  348251 - -13.7  -5.58209   GCAAAGGTAAAAAAA              GGGGTGC TGA GCACCCC              TTTGTCGTTGGGTTA 100 46
HAP49_RS01540  339677 ..  339697 - -10.3   -3.1462   AACCGATTAAAACGA            GCCGGGCAC CGT GCGCCCGGA            AACCGATCTCAGTGC  71 34
HAP49_RS01535  336508 ..  336534 -  -8.7  -2.91276   GCCCGCCTGAGAAAG        TGTGGGCGGGAG GATG CTCCCGCCCG-A         GTGGCAGGACTTCAG  63 37
         acs  330649 ..  330704 - -15.5   -2.7035   GGTATTGAGAGAGTA CGCCGCGCCAGGGCCGCTCA-ACGG CGCGTTAT CCGAATGAGCGGCC-TGAAGCGGCG TAAATTATGACGGCA  86 30
HAP49_RS01515 NONE
        actP  328541 ..  328557 - -13.7   -5.2696   GTAAAACGCAAAAAA              GCGCAGC TAC GCTGCGC              GGTTTTCCCCCTCCA 100 125
        purH  321079 ..  321100 - -11.5   -2.5001   AGAAGCTCCACGAAT           GGCGTGCGC CGGA GCGCACGCG            GCAAAAGGAATTAAT  70 36
        purD  319734 ..  319752 - -13.8  -5.28778   ACCAGCTATAAAAAA             GGCCCCGC GCT GCGGAGCC             TCTGGTCATGATCAT 100 52
HAP49_RS01440  314681 ..  314700 -  -2.8  -4.25056   GATTCGATGAACAAA            TCAG-GCGC TAG GCACTCCGA            CAAGATGCCCCCCAG  59 74
        thiC NONE
        thiE NONE
HAP49_RS01425 NONE
        thiS NONE
HAP49_RS01415 NONE
        thiH  308551 ..  308585 -  -7.9  -4.77173   GTCTCACAAAATAAA    CCGCCTGCT-CTTGTCC GTA AG-CAGGGAGCAGGCGG    CAAAAAGATCCGCGG  85 471
HAP49_RS01405  307325 ..  307335 -  -2.4  -3.40622   TACGGGTAAAAGACA                 CCGG CAT CGGG                 TTTAACGTCGATAAT  47 212
HAP49_RS01315  289791 ..  289809 -  -3.8  -4.30793   CCAGAGAATAAACAA             GCTGCATA TTA TAGACAGC             TTCGTTTTTGGCGTA  64 159
        coaA  288738 ..  288755 -  -9.1  -4.03183   AGTGAGAAAAGACAA             GGGGACA GTAA CGTCCCC              TGAATCGATCGGTAG  77 43
        fadB NONE
        fadA  271907 ..  271925 -  -9.5  -5.28176   TTCAGGCATAAAAAA             CCCGCCC CTGAC AGGCGGG             AAGAACGGCAACTAA 100 98
        rfaH  268009 ..  268024 - -11.8  -5.11063   ATGAGCCAACAAAAA              GGCGCC TGAG GGCGCC               TTTTGCATTACATCT 100 33
HAP49_RS01160  255919 ..  255968 -  -9.3  -3.53012   GCGGTTGGCCGGAAA CCCG-GCAGTCGCTG-GCCAACA TGGTAT TGGCGGCGCAGCGCCTGCGCGAG CAGGCGTGATGGCGT  70 121
        metR  252626 ..  252636 -  -3.2  -3.53012   TGGGTGGCGCCGAAA                 CAGC TCG GCTA                 AACGGGAGGGCGACA  49 43
HAP49_RS01140  250864 ..  250900 -    -5  -4.07568   GGGGCTTTGCTAAAA   CCG-CGCGCAGCGTGCT GACC AACCCGCTGATCGTCGG    CATTTTGTCCGGCAC  63 421
        panM NONE
HAP49_RS01070  236989 ..  237009 -  -4.6   -4.1822   GGCCAGCGGAAGAAA           GCGGC-GGG TGTT CCGTGCCGC            GCGCGTATCAAGGTG  63 33
HAP49_RS01065  234916 ..  234931 - -11.8  -5.26918   AGATTCGATAAAAAA              GCCCGG CAAG CCGGGC               TTTTTAGTGCCTGAA 100 49
        rsmD  229697 ..  229707 -  -3.2  -2.55351   GCGGCCCAGATTAAT                 CAAC ATG GTCG                 GTTTTCTCTTGCGAA  40 10
HAP49_RS01035  229363 ..  229399 -  -4.9  -4.55118   CAACCCGATAGAAAA    GGGCGCGCAGGGCACGT TGA ACATGCAGGGCACGCGC    TTCGTCTCGTTCACC  74 56
HAP49_RS01025  228252 ..  228273 - -15.9  -4.24342   GGCTTGATGAAGAAA           CGGGTTCGG CGCG CCGAACCCG            CGGTAGGTCTCTACA 100 36
HAP49_RS01010  223307 ..  223328 - -18.7  -3.60151   TCCCCCAAATGACAA           CGGGCGCGG TATG CCGCGCCCG            TGTTTGTTTCAGGGC 100 41
HAP49_RS01000  222137 ..  222152 -    -4  -2.88243   CCCAGAATAACACGA              CT-CAGC CCG GCTGCAG              GCCGCCGCTGCGCGC  45 11
HAP49_RS00995  221633 ..  221645 -  -2.7  -2.53876   TCGTATCGCAACCTA                TTCCA GGT TGAAA                TGCAAGGCAGATGTT  40 42
        dcrB  220991 ..  221008 - -14.1  -3.89215   TGGCATAAAGCGAAA             GGGCCGG CAAG CCGGCCC              TTTGTGGGATTACTG  93 35
        glpT  215120 ..  215134 - -12.8   -4.7373   GCAGGGTAGTAAAAA               GGCCGC AGG GCGGCC               TTTAAATCATGCAAA 100 54
        glpQ  213977 ..  213994 - -14.1  -4.13206   ACCATTAAATAATAA             GGGCGCC TCGC GGCGCCC              TTGGCATTACTTGTG 100 32
        rhtB  211308 ..  211323 -  -3.2  -3.65351   TGACCGGCAGTGAAA              TGCCCA AGGC CGAGCA               GCGATGCCCGGCCTT  52 46
HAP49_RS00930  207195 ..  207225 - -10.5  -3.14878   GTGGGGAACGTAAGA      TGCGGTGAGTGTAC TGAA GT-CGCTCACCGCA       CACAATCATCAGCCG  71 34
        rarD  206254 ..  206288 - -13.7  -3.68222   CTTCAAGCGCAAGAA    CTG-GCTGTAACCCGGC GGC GCCGGGCT-CAGCGCAG    CTTGCGCTGGGTATA  90 17
HAP49_RS00915  204037 ..  204079 -  -5.5  -3.57792   TGACCTATGCCGAAA CGCGCCGTCTGTACGGCAAA GAGG TTTACCAT-CGGCCGTCGCG CTTTATCGGCGAACT  57 340
        cyaY  197823 ..  197838 -  -2.5  -3.63515   TGCCATCTCCAACAA              CAAGC TGCACG GCCTG               TCTATCAAGGTGGAA  49 461
        hemC NONE
        hemD NONE
        hemX NONE
        hemY  191302 ..  191321 - -12.1  -5.75342   CCCGGGCAAAAAAAA            GCGCGGC ATCGGA GCCGCGC             TTTTCTCACTTGGGC 100 47
        rhlB NONE
         ppx  169956 ..  169972 - -15.1  -4.96773   GGAATTAAAAAGAAA              GGGCGCG ATT CGCGCCC              TGGTCATGTCAACGT 100 34
HAP49_RS00740  167145 ..  167167 -  -7.7  -4.82901   GCTGGCGCAGAAAAA           CGATCAGCT GAGCA AGCTGTTCG           CCACCTACGCCCGCA  88 391
        bcsE NONE
        bcsF NONE
        bcsG  147853 ..  147867 - -12.8  -5.82388   AAAGCCCAAAAAAAA               CGCGCC GGC GGCGCG               CTTTAGGTTGATGAG 100 48
HAP49_RS00605  131050 ..  131083 -  -7.4  -2.71144   TACCGGTTTCAACCA     GCAGGTGACG-CGCC ATGCG GACGACGTCAACCGC     GGTCTGAGTGTGTTT  52 413
HAP49_RS00585  125230 ..  125257 -   -14  -3.10091   ACGGTTAAAACGACA        GCGTGCGGCGGG GTTC CCCGCCGCGCTC         ACTCAAAGCCGAGCA  86 24
HAP49_RS00575  122557 ..  122580 - -12.4  -5.75478   AAGCACAGAAAAAAA          TAACGCCGGC TTGA GCCGGCGTTG           TCGGCGATCGTTACC 100 36
HAP49_RS00535 NONE
HAP49_RS00530  114490 ..  114501 -  -7.2  -4.65895   CCGTTGACGTAAAAA                CCGC TTAC GCGG                 CCTTTTTATTTCTGA  82 18
HAP49_RS00510  110484 ..  110499 -    -6  -3.30214   AATTTAGGAGAGGAA              GCGGCC GGTT GGCAGC               GACATTTGCCACTGG  55 80
HAP49_RS00505  108997 ..  109010 -  -5.9  -3.29511   CTTACTCTGGCAGAA               GGCCA AAAA CGGCC                ATCATGATGACAACA  55 52
HAP49_RS00500 NONE
HAP49_RS00495  107158 ..  107171 -  -5.9  -3.14564   TCAGCTGTTCATCAA               CGGCA ACTT CGCCG                ATACTTACTACATCT  51 313
HAP49_RS00485  104968 ..  104992 - -17.1  -5.25803   AAGCCGCATAAAAAA          CGCCGGTCGGG AAA CCGGACCGGCG          TTTTATCGTCGCGTT 100 40
HAP49_RS00475  102920 ..  102937 -    -4  -3.03124   GTTCAGCGCCGAAGA             GGCGCC GCTGTG GGCGCG              CATCGAACCGCTGTT  45 382
        sodA   91982 ..   92000 - -12.4  -5.47218   TTTCAGGCAAAAAAA             TACCCGCC GGC GGCGGGCA             TCTTCATCAACGGGA 100 46
HAP49_RS00425   89935 ..   89958 - -13.2  -2.59797   TTGCCACAAAGATAG          GGCGAGGAAC GGAT ATTCCTCGCC           TGATGGCGTCAGAAG  78 34
        yiiM NONE
HAP49_RS00410   87347 ..   87359 -  -9.1  -3.06183   GCCACCGTGATCCAA                CAGGG CAA CCCTG                ACTTGATCGCGCAGC  60 302
HAP49_RS00395   84844 ..   84870 - -10.9  -3.15544   GGCGAGGCGGATGAA        GCGCTGATCGCC ATGC AGCG-TCAGCGC         TATCAGCAGATGGTG  67 127
HAP49_RS00355 NONE
HAP49_RS00350   72492 ..   72523 -    -5  -5.08824   CGGGGACGCAAAAAA      GTG-GGTGACGCAGG GAG CCCGCATCGCCGCGC      TACCTATGACGCGCG  83 180
HAP49_RS00345   71686 ..   71698 -  -6.2  -2.85378   AAGGAGACTACCATA                CCCG ATGTG CGGG                CGGGAATGTTGAAGG  51 95
HAP49_RS00340   70497 ..   70510 -  -5.3  -3.60296   TACCGGTACGTTAAA               TGGAA CCGG TTCCA                GCGAAAAGCGGCAGA  56 124
HAP49_RS00335 NONE
HAP49_RS00330   68641 ..   68657 -  -2.1  -3.80733   GGCATGCCAGAAGAA              GGGGCAG ATG CTCTCCC              GACGCGTCCCGGTTG  50 86
HAP49_RS00325   67268 ..   67284 - -11.5  -3.53811   TCCAGCTGGGCCAAA              GGGGGCA TGG CGCCCCC              CCGGTTGGGTTAACA  79 60
        ghrB   66228 ..   66265 - -16.3  -2.50016   CCGCAGCAGGAAGAG   CAACACGGCCGGTTATC CGCA GACCACCGGCCGCGCTG    AGTTATTTCCGCAAC  91 28
HAP49_RS00310   63799 ..   63833 -   -13  -3.86194   AATGCGGCCGACAAA     TCGACCAATGGGCAAA AGC TTTGCTCATTAGCCGA     TTGTCAGCATATTAC  87 47
HAP49_RS00305   62435 ..   62451 - -15.1  -5.53288   TGTAATCCAAAAAAA              GGCGCCG TAG CGGCGCC              CTGATGGATTGCGCT 100 40
HAP49_RS00285   58517 ..   58548 -  -9.4  -2.66272   GGGGACGGAAAGCGA      GCTGCC-GGCGCC GCCGCTT GGCGTCAGGCAGC      GGCGGGTAACCTTTA  56 469
HAP49_RS00270 NONE
HAP49_RS00265   55273 ..   55292 - -10.6    -4.386   CAACGCCTGAGAAAA            CGGGGCGC AGCG GCGCCCCT             TTATACTTTCGCCAA  89 26
        rpmH   47414 ..   47436 -    -4  -2.74605   CCCTGGGAAAAGCGA           GCTTAACCAC TCA GCGGGTTAGC           TTTATTACTTAGAAA  44 30
        rnpA NONE
        yidD NONE
        yidC   45139 ..   45156 - -12.7  -4.75308   ATTAAGATGCAAAAA             GGCGGTC TAAT GACCGCC              TTTGGTGTGACTGCA 100 72
        mnmE   43694 ..   43721 - -14.2  -5.27938   AGCGGGAAAGAAAAA        CGGCCGGAACAA GGGC TTATCCCGGCCG         TGAAGGCCTCTGGCA 100 46
HAP49_RS00210   42716 ..   42733 -  -2.7  -2.64062   TAGATTAAGACTAAG             TTGAGGA TTTA TCATCAA              AAAACACTATGCGTT  40 84
HAP49_RS00205   41886 ..   41898 -  -3.3  -3.23274   GTCTTTACAATTTAA                TCCAG TAA CTGGT                GCGGTAAAGATCGCG  46 60
HAP49_RS00200   41156 ..   41167 -  -4.4  -3.12069   TTAATTTCAATAAAT                TGAC GGAC GTCA                 TGTCCTGTTGCGGCG  48 63
HAP49_RS00195   40049 ..   40068 -   -15  -3.71873   CCATTGACAGCCAAA            GGGCCGAC GGCG GTCGGCCC             TGAATCCCTAGACGC  95 33
HAP49_RS00185 NONE
        yieH   37333 ..   37347 -    -7  -3.61398   CTGGTGGCGCAACAA               GCCGCC GTT GCCGGC               CAGTTAATCGGCCGT  62 29
HAP49_RS00060   13231 ..   13254 -  -6.6  -3.21218   ATCGTGCATTACGAA          CTCACCGCCG CCAG CGGCATCGAG           CAGGCAGTGCGCTTT  53 347
         kup    8409 ..    8431 - -19.2  -4.91429   AAAGCGCAAACAAAA           GGGGCTCAGC CAT GCTGAGCCCC           TGTCAGGCGGATTAG 100 37
        rbsD NONE
        rbsA NONE
        rbsC NONE
        rbsB    4425 ..    4442 -  -5.5  -3.59979   GCGCGCCATCGTAAA             CGCC-CCG TCC CGATGGCG             CTGGTATGACTTACT  56 36
        rbsK NONE
        rbsR    2463 ..    2475 -  -6.9  -3.05715   AAGGCGGCCAGTTAA                CGGCG GCC CACCG                AAGCGCGTTCCACCA   0 9
